Citrus Sinensis ID: 004972

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-
Protein Sequence
MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSAPVSSSSTSRARL
Secondary Structure (PSIPRED)
cccccEEEEEEccEEEEEEEcccccccccHHHHHHHHHHHHHHHcccccEEEEEEcccccEEEccccHHHHcccccccccccccccHHHHHHHHHcccccEEEEEcccccHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHccccccHHHHHHcccccEEccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccccccccccccccEEEEEcccccHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccccccccccccEEEEEEcccHHHHHHHHHHHHHHccccEEEEcccccccHHHHHHHccccccEEEEccccccccccEEEEEccccccHHHHHHHHHHHHHccccEEEEccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccccccccccEEEEccccccccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEccccccccccHHHHHHHHcHHHHHHHHHHHHHHHcccccccHHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEccccEEEEEEccccccHccHHHHHHHHHHHHHHHcccccEEEEEEccccEEEEcccHHHHccccccccHHHHHHccHHHHHHHHHcccccEEEEEcEEEEcHHHHHHHHccEEEEEcccEEEccHHHHcccccccHHHHHccHHHHHHHHHccccccHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEccHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccHHHHccccEEEEcccccHHHHHHHHHHHHHHcccccEEEEccccccHHHHHcccccHHHEEEEEcccccccccEEEEEEcccccHHHHHHHHHHHHHcccEEEEEEccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccccccccccEEEEEcccccccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHcHccEEEEEccccccccccHHHHHHHccHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccccccccHHHHHHcc
Coil and Loop (DISEMBL)
maaprvtmevgnDGVAIITlinppvnalaIPIVAGLkdkfeeatsrddVKAIVLTgnggrfsggfdiNVFQkvhgagdvslmpDVSVELVVNLIEDCKKPIVAAVEGLALggglelamgchariaapktqlglpeltlgvipgtqrlprlVGLSKAIEMMLLSKsitseegwkLGLIDAVVTSEELLKVSRLWALDIAARRKpwirslhrtdklgsLSEAREVLKLARLQAkktapnmpqhqACLDVIEegivhggysGVLKEAKVFKELVMLDTSRGLVHVFFAQratskvpnvtdiglkprgvRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGvldysefkdVDMVIEAVIESVPLKQKIFSELekacpphcilatntstidlnivgektssqdriigahffspahvmpLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVgnctgfavnraffpysQSARLLVSLGVDvfridsairsfglpigpfqlldlagygvaaatskefdkafpdrsfqsPLVDLLLKsgrngkangkglytyekgskpkpdpsvlpiIEECRRlsnimpggkpisVTEKEIVEMILFPVVNESCRVLEEGIVVrasdlddasvlgmsfpsyrggiVFWADAVGANYVYTSLKKWSQLygnffkpsrfleeratkgiplsapvsssstsrarl
Flexible Loop (DISEMBL)
maaprvtmevgnDGVAIITLINPPVNALAIPIVAGLKDKFeeatsrddvKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGTQRLPRLVGLSKAIEMMLLSksitseegwKLGLIDAVVTSEELLKVSRLWALdiaarrkpwirslhrtdklgslseAREVLKLARLQakktapnmpQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFaqratskvpnvtdiglkprgVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIeanvrglvtrgkltqdkaNNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLlksgrngkangkglytyekgskpkpdpsvLPIIEECRrlsnimpggkPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERAtkgiplsapvsssstsrarl
Low Complexity Region (SEG)
MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIvaaveglalggglelaMGCHARIAAPKTQLGLPELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTvgkiikkvpvvvgNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIplsapvsssstsrarl
Disordered region (IsUnstruct)
*********VGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSL****EVLKLAR************HQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFP***FQSPLVDLLL****************************LPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFL************************
Disordered Region (DISOPRED)
***PRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG********DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAA*********************REVLKLA*********NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRAT*************RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANV*****************LKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEECRRLS*********SVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGI****************
Disordered Region (DISEMBL)
********EVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIP***************
Disordered Region (DISPRO)
**APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSAP*S*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSAPVSSSSTSRARL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	721	2.2.26 [Sep-21-2011]
Q9ZPI6	721	Peroxisomal fatty acid be	yes	no	0.987	0.987	0.744	0.0
Q8W1L6	726	Peroxisomal fatty acid be	yes	no	0.997	0.990	0.695	0.0
Q39659	725	Glyoxysomal fatty acid be	N/A	no	0.983	0.977	0.591	0.0
O49809	725	Glyoxysomal fatty acid be	N/A	no	0.988	0.983	0.588	0.0
Q9ZPI5	725	Peroxisomal fatty acid be	no	no	0.984	0.979	0.587	0.0
Q6NYL3	718	Peroxisomal bifunctional	yes	no	0.934	0.938	0.360	1e-106
Q08426	723	Peroxisomal bifunctional	yes	no	0.930	0.928	0.335	1e-103
Q5R5M8	723	Peroxisomal bifunctional	yes	no	0.930	0.928	0.337	1e-102
A8A2L0	714	Fatty acid oxidation comp	yes	no	0.938	0.948	0.329	4e-99
A4WCW6	715	Fatty acid oxidation comp	yes	no	0.938	0.946	0.322	9e-96

>sp|Q9ZPI6|AIM1_ARATH Peroxisomal fatty acid beta-oxidation multifunctional protein AIM1 OS=Arabidopsis thaliana GN=AIM1 PE=1 SV=1

 Score = 1088 bits (2814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/719 (74%), Positives = 629/719 (87%), Gaps = 7/719 (0%)

Query: 6   VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF 65
           VTMEVGNDGVA+IT+ NPPVN+LA PI++GLK+KF +A  R+DVKAIVL GN GRFSGGF
Sbjct: 7   VTMEVGNDGVAVITISNPPVNSLASPIISGLKEKFRDANQRNDVKAIVLIGNNGRFSGGF 66

Query: 66  DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIA 125
           DINVFQ+VH  GD+SLMP+VSVELV NL+ED +KP+VAAVEGLALGGGLELAM CHAR+A
Sbjct: 67  DINVFQQVHKTGDLSLMPEVSVELVCNLMEDSRKPVVAAVEGLALGGGLELAMACHARVA 126

Query: 126 APKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 182
           APK QLGLPELTLGVIPG   TQRLPRLVGL+KA +M+LLSKSI+SEEG KLGLIDA+V 
Sbjct: 127 APKAQLGLPELTLGVIPGFGGTQRLPRLVGLAKATDMILLSKSISSEEGHKLGLIDALVP 186

Query: 183 SEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ 242
             ++L  SR WALDIA  RKP+++SLHRTDK+GSLSEAR +LK +R  AKK APNMPQH 
Sbjct: 187 PGDVLSTSRKWALDIAEGRKPFLQSLHRTDKIGSLSEARAILKNSRQLAKKIAPNMPQHH 246

Query: 243 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKP 302
           AC++VIEEGI+HGGYSGVLKEA+VFK+LV+ DT++GLVHVFFAQRATSKVPNVTD+GLKP
Sbjct: 247 ACIEVIEEGIIHGGYSGVLKEAEVFKQLVLSDTAKGLVHVFFAQRATSKVPNVTDVGLKP 306

Query: 303 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT 362
           R ++KVAVIGGGLMGSGIATA +L+NI VVLKE+NSE+L+KGIK++EAN++ LV+RGKLT
Sbjct: 307 RPIKKVAVIGGGLMGSGIATALLLSNIRVVLKEINSEFLMKGIKSVEANMKSLVSRGKLT 366

Query: 363 QDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 422
           QDKA  AL + KGVLDY+EF DVDMVIEAVIE++ LKQ IF E+EK C PHCILA+NTST
Sbjct: 367 QDKAGKALSLFKGVLDYTEFNDVDMVIEAVIENIQLKQNIFKEIEKVCSPHCILASNTST 426

Query: 423 IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVV 482
           IDL+++GEKT+S+DRI+GAHFFSPAH+MPLLEIVR++ TSAQVILDLM VGK IKKVPVV
Sbjct: 427 IDLDVIGEKTNSKDRIVGAHFFSPAHLMPLLEIVRSKNTSAQVILDLMAVGKAIKKVPVV 486

Query: 483 VGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAA 542
           VGNC GFAVNR FFPYSQ+A +L +LGVD+FRIDS I SFGLP+GPFQL DLAG+G+  A
Sbjct: 487 VGNCIGFAVNRTFFPYSQAAHMLANLGVDLFRIDSVITSFGLPLGPFQLGDLAGHGIGLA 546

Query: 543 TSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEECRR 602
               + K + DR F+SP+ +LLLKSGRNGK NG+G Y YEKGSKPKPDPSVL I+E+ R+
Sbjct: 547 VGPIYAKVYGDRMFRSPMTELLLKSGRNGKINGRGYYIYEKGSKPKPDPSVLSIVEKSRK 606

Query: 603 LSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRG 662
           L+NIMPGGKPISVT+KEIVEMILFPVVNE+CRVL+EG+V+RASDLD ASVLGMSFPSYRG
Sbjct: 607 LTNIMPGGKPISVTDKEIVEMILFPVVNEACRVLDEGVVIRASDLDIASVLGMSFPSYRG 666

Query: 663 GIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSAPVSSSSTSRARL 721
           GIVFWAD VG  Y+Y  LKK S+ YG+FFKPSR+LEERA  G+ L    S S +SR++L
Sbjct: 667 GIVFWADTVGPKYIYERLKKLSETYGSFFKPSRYLEERAMNGMLL----SESKSSRSKL 721

Involved in peroxisomal fatty acid beta-oxidation. Required for wound-induced jasmonate biosynthesis. Possesses enoyl-CoA hydratase activity against short chain substrates (C4-C6) and 3-hydroxyacyl-CoA dehydrogenase activity against chains of variable sizes (C6-C16).
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 5

>sp|Q8W1L6|MFP_ORYSJ Peroxisomal fatty acid beta-oxidation multifunctional protein OS=Oryza sativa subsp. japonica GN=MFP PE=1 SV=2

 Score = 1032 bits (2668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/723 (69%), Positives = 608/723 (84%), Gaps = 4/723 (0%)

Query: 3   APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFS 62
           A RVTMEVG DGVA++T+ NPPVNAL   I+ GLK+K+ EA  RDDVKAIVLTG GG+F 
Sbjct: 4   AIRVTMEVGADGVAVVTICNPPVNALHPIIIQGLKEKYAEAMDRDDVKAIVLTGAGGKFC 63

Query: 63  GGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHA 122
           GGFDINVF +VH  G+VSLMPDVSVELV NL+E  KKP VAA++GLALGGGLEL MGCHA
Sbjct: 64  GGFDINVFTEVHKTGNVSLMPDVSVELVSNLMEAGKKPSVAAIQGLALGGGLELTMGCHA 123

Query: 123 RIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDA 179
           RI+ P+ QLGLPELTLG+IPG   TQRLPRLVGL KAIEMML SK IT++EG + GL+DA
Sbjct: 124 RISTPEAQLGLPELTLGIIPGFGGTQRLPRLVGLPKAIEMMLQSKFITAKEGKEGGLVDA 183

Query: 180 VVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 239
           + + +EL+K+SRLWAL+IA  RKPWIRSL RTD+LGSLSEAR VL  AR QAKK A N+P
Sbjct: 184 LCSPDELIKMSRLWALEIANYRKPWIRSLARTDRLGSLSEARSVLNSARQQAKKVAANLP 243

Query: 240 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIG 299
           QHQACLDV+EEG++ GG++GVLKEAKVFKELV+  TS+ LVH FFAQR T+KVP VTD+ 
Sbjct: 244 QHQACLDVMEEGVLCGGHAGVLKEAKVFKELVLSPTSKALVHAFFAQRLTTKVPGVTDVQ 303

Query: 300 LKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRG 359
           LKPR +RKVAVIGGGLMGSGIATA +++N  VVLKEVN ++L +G K I AN+ GLV RG
Sbjct: 304 LKPRKIRKVAVIGGGLMGSGIATALLVSNTSVVLKEVNPQFLQRGQKMIAANLEGLVKRG 363

Query: 360 KLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATN 419
            LT+DK N A+ +LKG LDYS+FKDVDMVIEAVIE +PLKQ IFS+LEK CPPHCILATN
Sbjct: 364 SLTKDKMNKAMSLLKGALDYSDFKDVDMVIEAVIEKIPLKQSIFSDLEKVCPPHCILATN 423

Query: 420 TSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKV 479
           TSTIDLN+VGEKT+SQDRIIGAHFFSPAH+MPLLEIVRTE+TS Q ILDL+TVGK+IKKV
Sbjct: 424 TSTIDLNVVGEKTNSQDRIIGAHFFSPAHIMPLLEIVRTEKTSPQAILDLITVGKMIKKV 483

Query: 480 PVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGV 539
           PVVVGNCTGFAVNR FFPY+Q + LLVS+G+DVFRID  I SFG+P+GPFQL DLAGYGV
Sbjct: 484 PVVVGNCTGFAVNRTFFPYTQGSHLLVSIGIDVFRIDRVISSFGMPMGPFQLQDLAGYGV 543

Query: 540 AAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEE 599
           A A    +  AF  R+  S LVDL++++GR GK+NGKG Y YEKG KPKPDPSV  +I+E
Sbjct: 544 ALAVKDIYAAAFGTRNLDSNLVDLMVQNGRQGKSNGKGYYLYEKGGKPKPDPSVQVVIDE 603

Query: 600 CRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPS 659
            RR +  MPGGKP+++++++I+EMI FPVVNE+CRV++E +V+RASDLD AS+LGM FP 
Sbjct: 604 YRRCAKTMPGGKPVTLSDQDILEMIFFPVVNEACRVMDENVVIRASDLDIASILGMGFPK 663

Query: 660 YRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSAP-VSSSSTSR 718
           +RGG+VFWAD +GA Y+++ L KW+++YG+FFKPS +LE+RA + +PLSAP  +  ++SR
Sbjct: 664 FRGGLVFWADTIGAPYIHSKLSKWTEIYGDFFKPSSYLEDRAKRSLPLSAPNATQQASSR 723

Query: 719 ARL 721
           +R+
Sbjct: 724 SRM 726

Multifunctional enzyme involved in fatty acid beta-oxidation. Also binds to RNA and microtubules. Possible role in subcellular mRNA localization and RNA-cytoskeleton interactions.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q39659|MFPA_CUCSA Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a OS=Cucumis sativus PE=1 SV=1

 Score =  887 bits (2293), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/713 (59%), Positives = 548/713 (76%), Gaps = 4/713 (0%)

Query: 2   AAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF 61
           A  R  MEVG DGVAIIT+INPPVN+L+  ++  L+D +E+A  RDDVKAIV+TG  G+F
Sbjct: 5   AKGRTVMEVGTDGVAIITIINPPVNSLSFDVLFSLRDSYEQALRRDDVKAIVVTGAKGKF 64

Query: 62  SGGFDINVFQKVHGA-GDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           SGGFDI  F  + G  G+   + ++S+E++ ++ E  +KP VAA++GLALGGGLE+AM C
Sbjct: 65  SGGFDITAFGVLQGGKGEQPNVRNISIEMITDIFEAARKPAVAAIDGLALGGGLEVAMAC 124

Query: 121 HARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 177
           HARI+ P  QLGLPEL LG+IPG   TQRLPRLVGLSKA+EMML SK I  +E   LGL+
Sbjct: 125 HARISTPTAQLGLPELQLGIIPGFGGTQRLPRLVGLSKALEMMLTSKPIKGQEAHSLGLV 184

Query: 178 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 237
           DA+V  EEL+  +R WAL+I  RR+PW+ SLHRTDKL SL+EAR++  LAR QAKK  PN
Sbjct: 185 DAIVPPEELINTARRWALEILERRRPWVHSLHRTDKLESLAEARKIFNLARAQAKKQYPN 244

Query: 238 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 297
           +    AC+D +E G+V G  +G+ KEA+ F+ L+  DT + L+H+FFAQR+T+KVP VTD
Sbjct: 245 LKHTIACIDAVETGVVSGPRAGLWKEAEEFQGLLHSDTCKSLIHIFFAQRSTTKVPGVTD 304

Query: 298 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 357
           +GL PR ++KVA++GGGLMGSGIATA IL+N +VVLKEVN ++L  GI  + AN++  V 
Sbjct: 305 LGLVPRQIKKVAIVGGGLMGSGIATALILSNYHVVLKEVNDKFLQAGIDRVRANLQSRVK 364

Query: 358 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 417
           +G +T +K   ++ +LKGVL+Y  FKDVDMVIEAVIE+V LKQ+IFS+LEK CPPHC+LA
Sbjct: 365 KGNMTNEKFEKSISLLKGVLNYESFKDVDMVIEAVIENVSLKQQIFSDLEKYCPPHCMLA 424

Query: 418 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 477
           TNTSTIDL ++GE+  S+DRIIGAHFFSPAH+MPLLEIVRT+ T+AQVI+DL+ VGK IK
Sbjct: 425 TNTSTIDLELIGERIKSRDRIIGAHFFSPAHIMPLLEIVRTKHTAAQVIVDLLDVGKNIK 484

Query: 478 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 537
           K PVVVGNCTGFAVNR FFPYSQ+A LL   GVD ++ID AI  FG+P+GPF+L DL G+
Sbjct: 485 KTPVVVGNCTGFAVNRMFFPYSQAAILLAEHGVDPYQIDRAISKFGMPMGPFRLCDLVGF 544

Query: 538 GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPII 597
           GVAAAT+ +F +AFP+R+++S L+ L+ +    G++  KG Y Y+K  K  P+P +   I
Sbjct: 545 GVAAATASQFVQAFPERTYKSMLIPLMQEDKNAGESTRKGFYVYDKNRKAGPNPELKKYI 604

Query: 598 EECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSF 657
           E+ R  S +    K   + EK+IVEMI FPVVNE+CRVL EGI V+A+DLD A V+GM F
Sbjct: 605 EKARNSSGVSVDPKLTKLPEKDIVEMIFFPVVNEACRVLAEGIAVKAADLDIAGVMGMGF 664

Query: 658 PSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSAP 710
           PSYRGG++FWAD++G+NY+Y+ L++WS+ YG FFKP  +L ERA +G  LSAP
Sbjct: 665 PSYRGGLMFWADSLGSNYIYSRLEEWSKQYGGFFKPCGYLAERAVQGATLSAP 717

Cucumis sativus (taxid: 3659)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|O49809|MFPA_BRANA Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a OS=Brassica napus PE=2 SV=2

 Score =  852 bits (2201), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/720 (58%), Positives = 547/720 (75%), Gaps = 7/720 (0%)

Query: 6   VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF 65
            T+EVG DGVA+ITLINPPVN+L+  ++  LK  +EEA SR+DVKAIV+TG  G+FSGGF
Sbjct: 9   TTIEVGADGVAVITLINPPVNSLSFDVLYSLKSNYEEALSRNDVKAIVVTGAKGKFSGGF 68

Query: 66  DINVFQKVH-GAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARI 124
           DI+ F ++  G      +  +S++++ +L+E  KKP VAA++GLALGGGLEL+M CHARI
Sbjct: 69  DISGFGEIQKGTMKEPKVGYISIDILTDLLEAAKKPSVAAIDGLALGGGLELSMACHARI 128

Query: 125 AAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVV 181
           +AP  QLGLPEL LGVIPG   TQRLPRLVGL+KA+EM+L SK + +EEG  LGLIDAVV
Sbjct: 129 SAPGAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGLIDAVV 188

Query: 182 TSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 241
              ELL  +R WALDIA RRKPW+ S+ +TDKL  L EARE+LK A+ Q ++ APNM   
Sbjct: 189 PPAELLNAARRWALDIAERRKPWVSSVLKTDKLPPLGEAREILKFAKDQTRRQAPNMKHP 248

Query: 242 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLK 301
             CL+ +E GIV G  +G+ KEA+V  E++ LDT++GL+HVFF+QR T+KVP VTD GL 
Sbjct: 249 LMCLEAVEVGIVSGSRAGLEKEAQVGSEVINLDTTKGLIHVFFSQRGTTKVPGVTDRGLV 308

Query: 302 PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL 361
           PR + KVA+IGGGLMGSGIATA IL+N  V+LKEVN ++L  GI  ++AN++  V +GK+
Sbjct: 309 PRKINKVAIIGGGLMGSGIATALILSNYSVILKEVNEKFLEAGIGRVKANLQSRVKKGKM 368

Query: 362 TQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 421
           +++K    + +LKG LDY  F+DVDMVIEAVIE++ LKQ+IF++LEK CP HCILA+NTS
Sbjct: 369 SKEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTS 428

Query: 422 TIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPV 481
           TIDLN +GE+T SQDRIIGAHFFSPAHVMPLLEIVRT  TSAQVI+DL+ VGK I+K PV
Sbjct: 429 TIDLNKIGERTKSQDRIIGAHFFSPAHVMPLLEIVRTNHTSAQVIVDLLDVGKKIRKTPV 488

Query: 482 VVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAA 541
           VVGNCTGFAVNR FFPY+Q+A  LV  G D + ID A+  FG+P+GPF+L DL G+GVA 
Sbjct: 489 VVGNCTGFAVNRMFFPYTQAAMFLVEHGTDPYLIDKAVSKFGMPMGPFRLCDLVGFGVAI 548

Query: 542 ATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEECR 601
           AT+ +F + FP+R+++S ++ L+ +  R G+A  KG Y Y+   K KPDP +   I++ R
Sbjct: 549 ATATQFIENFPERTYKSMIIPLMQEDKRAGEATRKGFYLYDDRRKAKPDPEIKNYIDKAR 608

Query: 602 RLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYR 661
            +S   P  K   ++EKEI+EM  FPVVNE+CRV  EGI V+A+DLD A + GM FP YR
Sbjct: 609 SVSGAKPDPKLEKLSEKEIIEMTFFPVVNEACRVFAEGIAVKAADLDIAGIFGMGFPPYR 668

Query: 662 GGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSAPVSSSSTSRARL 721
           GGI+FWAD++G+ Y+Y+ L++WS+ YG FFKP  FL ER +KG PLSAP+     SR+RL
Sbjct: 669 GGIMFWADSIGSKYIYSKLEEWSKAYGEFFKPCAFLAERGSKGAPLSAPLEQ---SRSRL 725

Brassica napus (taxid: 3708)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q9ZPI5|MFP2_ARATH Peroxisomal fatty acid beta-oxidation multifunctional protein MFP2 OS=Arabidopsis thaliana GN=MFP2 PE=1 SV=1

 Score =  843 bits (2179), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/718 (58%), Positives = 544/718 (75%), Gaps = 8/718 (1%)

Query: 5   RVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
           +  MEVG DGVA+ITLINPPVN+L+  ++  LK  +EEA SR+DVKAIV+TG  GRFSGG
Sbjct: 8   KTVMEVGGDGVAVITLINPPVNSLSFDVLYNLKSNYEEALSRNDVKAIVITGAKGRFSGG 67

Query: 65  FDINVFQKVHGAGDVSLMPD---VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
           FDI+ F ++   G+V   P    +S++++ +L+E  +KP VAA++GLALGGGLELAM CH
Sbjct: 68  FDISGFGEMQ-KGNVK-EPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACH 125

Query: 122 ARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 178
           ARI+AP  QLGLPEL LGVIPG   TQRLPRLVGL+KA+EM+L SK + +EEG  LGLID
Sbjct: 126 ARISAPAAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGLID 185

Query: 179 AVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 238
           AVV   EL+  +R WALDI  RRKPW+ S+ +TDKL  L EARE+L  A+ Q  K APNM
Sbjct: 186 AVVPPAELVTTARRWALDIVGRRKPWVSSVSKTDKLPPLGEAREILTFAKAQTLKRAPNM 245

Query: 239 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDI 298
                CLD IE GIV G  +G+ KEA+V  ++V LDT++GL+HVFF+QR T+KVP VTD 
Sbjct: 246 KHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKGLIHVFFSQRGTAKVPGVTDR 305

Query: 299 GLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTR 358
           GL PR ++KVA+IGGGLMGSGIATA IL+N  V+LKEVN ++L  GI  ++AN++  V +
Sbjct: 306 GLVPRKIKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRK 365

Query: 359 GKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 418
           G ++Q+K    + +LKG LDY  F+DVDMVIEAVIE++ LKQ+IF++LEK CP HCILA+
Sbjct: 366 GSMSQEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILAS 425

Query: 419 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKK 478
           NTSTIDLN +GE+T SQDRI+GAHFFSPAH+MPLLEIVRT  TSAQVI+DL+ VGK IKK
Sbjct: 426 NTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKIKK 485

Query: 479 VPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYG 538
            PVVVGNCTGFAVNR FFPY+Q+A  LV  G D + ID AI  FG+P+GPF+L DL G+G
Sbjct: 486 TPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRAISKFGMPMGPFRLCDLVGFG 545

Query: 539 VAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIE 598
           VA AT+ +F + F +R+++S ++ L+ +  R G+A  KG Y Y+   K KPDP +   IE
Sbjct: 546 VAIATATQFIENFSERTYKSMIIPLMQEDKRAGEATRKGFYLYDDKRKAKPDPELKKYIE 605

Query: 599 ECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFP 658
           + R +S +    K  +++EK+I+EM  FPVVNE+CRV  EGI V+A+DLD A ++GM FP
Sbjct: 606 KARSISGVKLDPKLANLSEKDIIEMTFFPVVNEACRVFAEGIAVKAADLDIAGIMGMGFP 665

Query: 659 SYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSAPVSSSST 716
            YRGGI+FWAD++G+ Y+Y+ L +WS+ YG FFKP  FL ER +KG+ LSAPV  +S+
Sbjct: 666 PYRGGIMFWADSIGSKYIYSRLDEWSKAYGEFFKPCAFLAERGSKGVLLSAPVKQASS 723

Involved in peroxisomal fatty acid beta-oxidation during seed germination. Possesses enoyl-CoA hydratase activity against long chain substrates (C14-C18) and 3-hydroxyacyl-CoA dehydrogenase activity against chains of variable sizes (C6-C18).

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q6NYL3|ECHP_DANRE Peroxisomal bifunctional enzyme OS=Danio rerio GN=ehhadh PE=2 SV=1

 Score =  388 bits (996), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 260/722 (36%), Positives = 388/722 (53%), Gaps = 48/722 (6%)

Query: 9   EVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDIN 68
           E+    VA+ITL NPPVNAL+  +   +    E A S   V A+V+ G  GRF GG DI 
Sbjct: 5   ELVKRSVALITLTNPPVNALSSAVRHAISKTMERALSDPKVTAVVICGENGRFCGGADIR 64

Query: 69  VFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
            F     AG +   P V +   ++ IE  +KP+VAA+EG+ALGGG ELA+ CH RIA  K
Sbjct: 65  EF-----AGPLRGPPLVPL---LDAIEAGEKPVVAAIEGVALGGGFELALVCHYRIAHYK 116

Query: 129 TQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 185
            +LGLPE+TLG++P   GTQRLPRL+G+  A+E++   + ++++E  KLG++D V T + 
Sbjct: 117 ARLGLPEVTLGILPAAGGTQRLPRLIGIPAALELITTGRHVSAQEALKLGMVDQV-TEQN 175

Query: 186 LLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEA--REVLKLARLQAKKTAPNMPQHQA 243
             +V+  +AL      KP   S  R   L +        + + A +Q +K A  +    A
Sbjct: 176 TCEVALEFALKAVG--KPL--SSRRLSMLTTPCPPGLDGIFEAATMQVQKKARGVMAPLA 231

Query: 244 CLDVIEEGIVHGGYS-GVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK--VPNVTDIG- 299
           C+  +    +   YS G+ +E ++   L     ++ L + FFAQR   K  +P+      
Sbjct: 232 CVQAVRAATLP--YSEGIKREGELMATLFSSGQAQALQYSFFAQRTAEKWTLPSGAQWNN 289

Query: 300 LKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRG 359
            KPR ++  AVIG G MG GI  +  L  + + +  V SE  L  ++T    V G++ R 
Sbjct: 290 SKPREIQSAAVIGLGTMGRGIVVS--LARVGISVIAVESEKKL--LETGRQMVIGMLER- 344

Query: 360 KLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATN 419
              +   + +L +LK  L   + KDVD+VIEAV E + LK++IF EL + C P  +L +N
Sbjct: 345 DAKRRGVSASLNLLKFSLSLQDLKDVDLVIEAVFEDMALKKQIFRELSRVCRPATLLCSN 404

Query: 420 TSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKV 479
           TS +D++ + + T     + G HFFSPAHVM LLE+V   R+S + I   M++GK + KV
Sbjct: 405 TSGLDVDALADVTDRPQLVAGMHFFSPAHVMKLLEVVCGPRSSKEAIATAMSLGKRMGKV 464

Query: 480 PVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGV 539
            V VGNC GF  NR   PY + A  L+  G    +ID A+  FG  +G F++ DLAG  V
Sbjct: 465 SVAVGNCPGFVGNRMLMPYLEQATFLLEEGATPQQIDKALEDFGFAMGVFRMSDLAGLDV 524

Query: 540 AAATSKE-------FDKAFPDRSFQ----SPLVDLLLKSGRNGKANGKGLYTYEK--GSK 586
                KE        D   P R  Q     P+ D++ + GR G+  G+G Y Y+K   + 
Sbjct: 525 GWRVRKESGLTGPDVDPKDPPRRRQGRKYCPIPDMVCQQGRFGQKTGRGWYMYDKPGDTN 584

Query: 587 PKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASD 646
            KPDP +  ++E  R    I    +P  +T++EI+E  LF + NE  R+L++ I  +  D
Sbjct: 585 AKPDPLIQNLLETYRSRYGI----QPRKITDQEIIERCLFALANEGFRILKDKIAGQPED 640

Query: 647 LDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN--FFKPSRFLEERATKG 704
           +D   + G  FP +RGG +F+A  VG   V   L+ +     +    +PS  L++   +G
Sbjct: 641 IDVIYLFGYGFPRHRGGPMFYASMVGLERVLERLEYYHHALPDVPHLEPSPLLKKLVARG 700

Query: 705 IP 706
            P
Sbjct: 701 SP 702

Danio rerio (taxid: 7955)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q08426|ECHP_HUMAN Peroxisomal bifunctional enzyme OS=Homo sapiens GN=EHHADH PE=1 SV=3

 Score =  377 bits (967), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 243/724 (33%), Positives = 388/724 (53%), Gaps = 53/724 (7%)

Query: 12  NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           ++ +A+I L NPPVNA++  ++  +K+  ++A     +KAIV+ G  G+FS G DI  F 
Sbjct: 8   HNALALIRLRNPPVNAISTTLLRDIKEGLQKAVIDHTIKAIVICGAEGKFSAGADIRGFS 67

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
                G       +++  VV+ I+  +KP+VAA++G+A GGGLELA+GCH RIA  + Q+
Sbjct: 68  APRTFG-------LTLGHVVDEIQRNEKPVVAAIQGMAFGGGLELALGCHYRIAHAEAQV 120

Query: 132 GLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS---EE 185
           GLPE+TLG++PG   TQ LPRL G+  A++++   + I ++E  KLG++D VV S   EE
Sbjct: 121 GLPEVTLGLLPGARGTQLLPRLTGVPAALDLITSGRRILADEALKLGILDKVVNSDPVEE 180

Query: 186 LLKVS-RLWALDIAARR---KPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 241
            ++ + R+    + +RR   KP I+SL   D +   SEA        L+ ++  P     
Sbjct: 181 AIRFAQRVSDQPLESRRLCNKP-IQSLPNMDSI--FSEAL-------LKMRRQHPGCLAQ 230

Query: 242 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLK 301
           +AC+  ++  + +    G+ KE ++F  L+    +R L + FFA+R  +K    +    K
Sbjct: 231 EACVRAVQAAVQYPYEVGIKKEEELFLYLLQSGQARALQYAFFAERKANKWSTPSGASWK 290

Query: 302 ---PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTR 358
               R V  V V+G G MG GI  +     I V+  + +   L    K I + +    ++
Sbjct: 291 TASARPVSSVGVVGLGTMGRGIVISFARARIPVIAVDSDKNQLATANKMITSVLEKEASK 350

Query: 359 GKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 418
            + +    +     L   +   E   VD+VIEAV E + LK+++F+EL   C P   L T
Sbjct: 351 MQQSGHPWSGPKPRLTSSV--KELGGVDLVIEAVFEEMSLKKQVFAELSAVCKPEAFLCT 408

Query: 419 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKK 478
           NTS +D++ +   T     +IG HFFSPAHVM LLE++ ++ +S   I  +M + K IKK
Sbjct: 409 NTSALDVDEIASSTDRPHLVIGTHFFSPAHVMKLLEVIPSQYSSPTTIATVMNLSKKIKK 468

Query: 479 VPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYG 538
           + VVVGNC GF  NR   PY   A  L+  G     +D  +  FG  +GPF++ DLAG  
Sbjct: 469 IGVVVGNCFGFVGNRMLNPYYNQAYFLLEEGSKPEEVDQVLEEFGFKMGPFRVSDLAGLD 528

Query: 539 VAAATSKEFDKAFP------------DRSFQSPLVDLLLKSGRNGKANGKGLYTYEK--G 584
           V   + K      P            +R +  P+ D+L + GR G+  GKG Y Y+K  G
Sbjct: 529 VGWKSRKGQGLTGPTLLPGTPARKRGNRRY-CPIPDVLCELGRFGQKTGKGWYQYDKPLG 587

Query: 585 SKPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRA 644
              KPDP +   +   R+  +I    +P ++++ EI+E  L+ ++NE+ R+L EGI    
Sbjct: 588 RIHKPDPWLSKFLSRYRKTHHI----EPRTISQDEILERCLYSLINEAFRILGEGIAASP 643

Query: 645 SDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNF--FKPSRFLEERAT 702
             +D   + G  +P ++GG +F+A  VG   V   L+K+ +   +    +PS +L++ A+
Sbjct: 644 EHIDVVYLHGYGWPRHKGGPMFYASTVGLPTVLEKLQKYYRQNPDIPQLEPSDYLKKLAS 703

Query: 703 KGIP 706
           +G P
Sbjct: 704 QGNP 707

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q5R5M8|ECHP_PONAB Peroxisomal bifunctional enzyme OS=Pongo abelii GN=EHHADH PE=2 SV=1

 Score =  372 bits (956), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 244/724 (33%), Positives = 387/724 (53%), Gaps = 53/724 (7%)

Query: 12  NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           ++ +A+I L NPPVNA++  ++  +K+  ++A     +KAIV+ G  G+FS G DI+ F 
Sbjct: 8   HNALALIRLRNPPVNAISTALLRDIKEGLQKAVIDHTIKAIVICGAEGKFSAGADIHGFS 67

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
                G        ++  VV+ I+  +KP+VAA++G+A GGGLELA+GCH RIA  + Q+
Sbjct: 68  APRTFG-------FTLGHVVDEIQRNEKPVVAAIQGMAFGGGLELALGCHYRIAHSEAQV 120

Query: 132 GLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS---EE 185
           GLPE+TLG++PG   TQ LPRL+G+  A++++   + I ++E  KLG++D VV S   EE
Sbjct: 121 GLPEVTLGLLPGARGTQLLPRLIGVPAALDLITSGRHILADEALKLGILDKVVNSDPVEE 180

Query: 186 LLKVS-RLWALDIAARR---KPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 241
            ++ + R+    + +RR   KP I+SL   D +   SEA  +LK+ R       P     
Sbjct: 181 AIRFAQRVSDQPLESRRLCNKP-IQSLPNMDTI--FSEA--LLKMRRQH-----PGCLAQ 230

Query: 242 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLK 301
           +AC+  ++  + +    GV KE ++F  L     +R L + F A+R  +K    +    K
Sbjct: 231 EACVRAVQAAVQYPYEVGVKKEEELFLYLFQSGQARALQYAFLAERKANKWSTPSGASWK 290

Query: 302 ---PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTR 358
               R V  V V+G G MG GI  +     I V+  + +   L    K I + +    ++
Sbjct: 291 TASARPVSSVGVVGLGTMGRGIVISFARARIPVIAVDSDKNQLATANKMITSVLEKEASK 350

Query: 359 GKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 418
            + +    +     L   +   E   VD+VIEAV E + LK+++F+EL   C P   L T
Sbjct: 351 MQQSGHPWSGPKPRLTSSM--KELGGVDLVIEAVFEEMSLKKQVFAELSAICKPEAFLCT 408

Query: 419 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKK 478
           NTS +D++ +   T     +IG HFFSPAHVM LLE++ ++ +S   I  +M + K IKK
Sbjct: 409 NTSALDVDEIASSTDRPHLVIGTHFFSPAHVMKLLEVIPSQYSSPTTIATVMNLSKKIKK 468

Query: 479 VPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYG 538
           + VVVGNC GF  NR   PY   A  L+  G     +D  +  FG  +GPF++ DLAG  
Sbjct: 469 IGVVVGNCFGFVGNRMLNPYYNQAYFLLEEGSKPEEVDQVLEEFGFKMGPFRVSDLAGLD 528

Query: 539 VAAATSKEFDKAFP------------DRSFQSPLVDLLLKSGRNGKANGKGLYTYEK--G 584
           V   + K      P            +R +  P+ D+L + GR G+  GKG Y Y+K  G
Sbjct: 529 VGWKSRKGQGLTGPTLPPGTPARKRGNRRY-CPIPDVLCELGRFGQKTGKGWYQYDKPLG 587

Query: 585 SKPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRA 644
              K DP +   + + R   +I    +P ++++ EI+E  L+ ++NE+ R+L EGI    
Sbjct: 588 RIHKADPWLSKFLSQYRETHHI----EPRTISQDEILERCLYSLINEAFRILGEGIAASP 643

Query: 645 SDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNF--FKPSRFLEERAT 702
             +D   + G  +P ++GG +F+A  VG   V   L+K+ +   +    +PS +L++ A+
Sbjct: 644 EHIDVVYLHGYGWPRHKGGPMFYASTVGLPTVLEKLQKYYRQNPDIPQLEPSDYLKKLAS 703

Query: 703 KGIP 706
           +G P
Sbjct: 704 QGNP 707

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|A8A2L0|FADJ_ECOHS Fatty acid oxidation complex subunit alpha OS=Escherichia coli O9:H4 (strain HS) GN=fadJ PE=3 SV=1

 Score =  363 bits (931), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 236/716 (32%), Positives = 372/716 (51%), Gaps = 39/716 (5%)

Query: 7   TMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSG 63
           T+ V  D +AIIT+  P   +N L     + ++   ++     +++ +V ++     F  
Sbjct: 8   TLNVRLDNIAIITIDVPDEKMNTLKAEFASQVRAIIKQLRENKELRGVVFISAKPDNFIA 67

Query: 64  GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHAR 123
           G DIN+      A +   +     +L+   I     P++AA+ G  LGGGLELA+ CH R
Sbjct: 68  GADINMIGNCKTAQEAEALARQGQQLMAE-IHALPIPVIAAIHGACLGGGLELALACHGR 126

Query: 124 IAA--PKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 178
           +    PKT LGLPE+ LG++PG   TQRLPRL+G+S A+EM+L  K + +++  KLGL+D
Sbjct: 127 VCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVD 186

Query: 179 AVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKL--GSLSEAREVLKLARLQAKKTAP 236
            VV    LL+     A+++A + +P  R L   +++  G L  A     + +    KT  
Sbjct: 187 DVVPHSILLEA----AVELAKKDRPSSRPLPVRERILAGPLGRALLFKMVGKKTEHKTQG 242

Query: 237 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVT 296
           N P  +  L+V+E G+  G  SG   EA+ F EL M   S+ L  +FFA     K P   
Sbjct: 243 NYPATERILEVVETGLAQGTSSGYDAEARAFGELAMTPQSQALRSIFFASTDVKKDPGSD 302

Query: 297 DIGLKPRGVRKVAVIGGGLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGL 355
                P  +  V ++GGGLMG+GIA        + V +K++N + +   +K     + G 
Sbjct: 303 ---APPAPLNSVGILGGGLMGAGIAYVTACKAGLPVRIKDINPQGINHALKYSWDQLEGK 359

Query: 356 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCI 415
           V R  L   + +  L ++ G  DY  F   D++IEAV E++ LKQ++ +E+E+ C  H I
Sbjct: 360 VRRRHLKASERDKQLALISGTTDYRGFAHRDLIIEAVFENLELKQQMVAEVEQNCAAHTI 419

Query: 416 LATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKI 475
            A+NTS++ +  +    +  +++IG HFFSP   MPL+EI+    TSAQ I   + + K 
Sbjct: 420 FASNTSSLPIGDIAAHAARPEQVIGLHFFSPVEKMPLVEIIPHAGTSAQTIATTVKLAKK 479

Query: 476 IKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLA 535
             K P+VV +  GF VNR   PY   A  +++ G  V  ID+A+  FG P+GP QLLD  
Sbjct: 480 QGKTPIVVRDKAGFYVNRILAPYINEAIRMLTEGERVEHIDAALVKFGFPVGPIQLLDEV 539

Query: 536 GYGVAAATSKEFDKAFPDRSFQSP--LVDLLLKSGRNGKANGKGLYTY-EKGSKPKP--D 590
           G           + A+ +R F +P  +V  +L   R G+ NG+G Y Y +KG K K   D
Sbjct: 540 GIDTGTKIIPVLEAAYGER-FSAPANVVSSILNDDRKGRKNGRGFYLYGQKGRKSKKQVD 598

Query: 591 PSVLPII--EECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLD 648
           P++ P+I  +   RLS              ++ E  +  ++NE+ R ++E ++    D D
Sbjct: 599 PAIYPLIGAQGQGRLS------------APQVAERCVMLMLNEAVRCVDEQVIRSVRDGD 646

Query: 649 DASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKG 704
             +V G+ FP + GG   + D++GA  V   +++ +  YG+ F P   L E   +G
Sbjct: 647 IGAVFGIGFPPFLGGPFRYIDSLGAGEVVAIMQRLATQYGSRFTPCERLVEMGARG 702

Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities.

Escherichia coli O9:H4 (strain HS) (taxid: 331112)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|A4WCW6|FADJ_ENT38 Fatty acid oxidation complex subunit alpha OS=Enterobacter sp. (strain 638) GN=fadJ PE=3 SV=1

 Score =  351 bits (901), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 229/710 (32%), Positives = 369/710 (51%), Gaps = 33/710 (4%)

Query: 7   TMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSG 63
           T+ V  D +A++T+  P   +N L       ++   ++     +++ ++ ++     F  
Sbjct: 8   TLNVRLDNIAVVTIDVPGEKMNTLKAEFGVQVRSILKQVRDNKNIRGLIFISAKSDNFIA 67

Query: 64  GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHAR 123
           G DIN+  +   A +   +     +++   I     P++AA+ G  LGGGLELA+ CH+R
Sbjct: 68  GADINMIARAKSAQEAEELARQGQQIMAE-IHGLSIPVIAAIHGACLGGGLELALACHSR 126

Query: 124 IAA--PKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 178
           +     KT LGLPE+ LG++PG   TQRLPRLVG+S A+EM+L  K +   +  K+GL+D
Sbjct: 127 VCTDDAKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALEMILTGKQLRPRQALKVGLVD 186

Query: 179 AVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKL--GSLSEAREVLKLARLQAKKTAP 236
            VV    LL      A+++A + +   R L   +++  G L  A    ++ +   +KT  
Sbjct: 187 EVVPHSILLTA----AVELAQKERQASRHLPVRERILAGPLGRALLFNRVGKKTEQKTKG 242

Query: 237 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVT 296
           N P  +  LDVIE G+  G  SG   EAK F EL M   S+ L  +FFA     K P  +
Sbjct: 243 NYPATKRILDVIETGLSQGSSSGYAAEAKAFGELAMTPQSQALRSIFFASTEVKKDPG-S 301

Query: 297 DIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLV 356
           ++   P     V   G    G    TA     + V +K++N++ +   ++     +   V
Sbjct: 302 EVAPGPLNAIGVLGGGLMGGGISFVTAS-KGKLPVRIKDINAKGINHALQYSWQLLDQKV 360

Query: 357 TRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCIL 416
            R  +   + + AL ++ G +D+S FK  D+VIEAV E + LKQ++ +++E+ C PH I 
Sbjct: 361 KRRHIKASERDRALALISGTIDFSGFKHRDVVIEAVFEDLQLKQQMVADVEQYCAPHTIF 420

Query: 417 ATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKII 476
           A+NTS++ +  +    +  +++IG HFFSP   MPL+E++  E TSAQ +  ++ + K  
Sbjct: 421 ASNTSSLPIGDIAANAARPEQVIGLHFFSPVEKMPLVEVIPHESTSAQTVATVVKLAKRQ 480

Query: 477 KKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAG 536
            K P+VV +  GF VNR   PY   A  L++ G  V  +D A+  FG P+GP QLLD  G
Sbjct: 481 GKTPIVVADKAGFYVNRILAPYINEAMRLLTEGEKVENVDDALVKFGFPVGPIQLLDEVG 540

Query: 537 YGVAAATSKEFDKAFPDRSFQSP--LVDLLLKSGRNGKANGKGLYTYE---KGSKPKPDP 591
                      + A+ +R F  P  +V  +L   R G+ NG+G Y Y    + SK + DP
Sbjct: 541 IDTGTKIIPVLEAAYGER-FSPPANVVSAILNDDRKGRKNGRGFYLYAAKGRKSKKQVDP 599

Query: 592 SVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDAS 651
           SV  +I       N    GK   +T ++  E  +  ++NE+ R  +E ++  A D D  +
Sbjct: 600 SVYGLI-------NASGQGK---LTAQQCAERCVMMMLNEAARCFDEKVIKNARDGDIGA 649

Query: 652 VLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERA 701
           V G+ FP + GG   + D++GA  V  +L++ + LYG+ F P   L++ A
Sbjct: 650 VFGIGFPPFLGGPFRYMDSLGAGEVVATLQRLASLYGSRFTPCETLKQMA 699

Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities.

Enterobacter sp. (strain 638) (taxid: 399742)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	721
224142159	726	predicted protein [Populus trichocarpa]	0.980	0.973	0.833	0.0
225445200	724	PREDICTED: peroxisomal fatty acid beta-o	1.0	0.995	0.791	0.0
255546439	724	3-hydroxyacyl-CoA dehyrogenase, putative	1.0	0.995	0.799	0.0
315419009	721	MFP [Gossypium hirsutum]	0.994	0.994	0.806	0.0
406365505	724	cinnamoyl-CoA hydratase-dehydrogenase [P	0.977	0.973	0.809	0.0
356520511	724	PREDICTED: peroxisomal fatty acid beta-o	1.0	0.995	0.788	0.0
357500631	722	Peroxisomal fatty acid beta-oxidation mu	0.997	0.995	0.788	0.0
449443155	724	PREDICTED: peroxisomal fatty acid beta-o	1.0	0.995	0.751	0.0
356531273	724	PREDICTED: peroxisomal fatty acid beta-o	1.0	0.995	0.780	0.0
449515444	719	PREDICTED: peroxisomal fatty acid beta-o	0.993	0.995	0.745	0.0

>gi|224142159|ref|XP_002324426.1| predicted protein [Populus trichocarpa] gi|222865860|gb|EEF02991.1| predicted protein [Populus trichocarpa]

 Score = 1201 bits (3108), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 592/710 (83%), Positives = 652/710 (91%), Gaps = 3/710 (0%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           MA P VTMEVGNDGVA++TLINPPVNALAIPI+AGLK+KF+EAT R+DVKA+VLTG GGR
Sbjct: 1   MAKPHVTMEVGNDGVAVVTLINPPVNALAIPIIAGLKEKFDEATRRNDVKALVLTGKGGR 60

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           FSGGFDINVFQKVH  GD+SLMPDVSVELVVN IEDCKKP+VAAVEGLALGGGLELAMGC
Sbjct: 61  FSGGFDINVFQKVHATGDISLMPDVSVELVVNTIEDCKKPVVAAVEGLALGGGLELAMGC 120

Query: 121 HARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 177
           HARIAAPKTQLGLPELTLGVIPG   TQRLPRL+GLSKAIE+MLLSK I SEEG KLGLI
Sbjct: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLLGLSKAIEIMLLSKPIMSEEGKKLGLI 180

Query: 178 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 237
           DA+V S+ELLKVSR WALDI+ RRKPW+RSLHRTDK+GSLSEAREVLK AR QAKK APN
Sbjct: 181 DAIVPSQELLKVSRQWALDISERRKPWLRSLHRTDKIGSLSEAREVLKAARQQAKKIAPN 240

Query: 238 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 297
           +PQHQA LDV+EEGI+HGGY+GVLKEAKVFKELV+ +TS+GLVHVFFAQR TSK+P VTD
Sbjct: 241 VPQHQALLDVMEEGIIHGGYNGVLKEAKVFKELVLTETSKGLVHVFFAQRMTSKIPKVTD 300

Query: 298 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 357
           +GLKPR ++KVAVIGGGLMGSGIATA I++NI+VVLKE+NSEYL KG KTIEANVR LVT
Sbjct: 301 VGLKPRHIKKVAVIGGGLMGSGIATALIVSNIHVVLKEINSEYLQKGTKTIEANVRSLVT 360

Query: 358 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 417
           RGKLT+DKA+ AL MLKG LDYS+FKDVDMVIEAVIESVPLKQKIFSE+EK CPPHCILA
Sbjct: 361 RGKLTRDKADKALSMLKGALDYSDFKDVDMVIEAVIESVPLKQKIFSEIEKICPPHCILA 420

Query: 418 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 477
           TNTSTIDLN+VGEKTSSQDRIIGAHFFSPAH+MPLLEIVRTE+TSAQ ILDLMTVGK IK
Sbjct: 421 TNTSTIDLNLVGEKTSSQDRIIGAHFFSPAHIMPLLEIVRTEKTSAQAILDLMTVGKTIK 480

Query: 478 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 537
           KVPVVVGNCTGFAVNRAFFPY+QSA +LV LGVDVFRID  I SFGLP+GP+QL DL+GY
Sbjct: 481 KVPVVVGNCTGFAVNRAFFPYTQSALILVHLGVDVFRIDKLISSFGLPMGPYQLQDLSGY 540

Query: 538 GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPII 597
           GVA A  KEF  AFPDR+FQSPL+ LL+KSGRNGK NGKG Y YEKGSKP+PDPSVLPII
Sbjct: 541 GVALAVEKEFANAFPDRTFQSPLIHLLVKSGRNGKTNGKGYYIYEKGSKPRPDPSVLPII 600

Query: 598 EECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSF 657
           EE RRL+NIMP GKPI++T+KEIVEM+LFPVVNE+CRVL+EG+VVRASDLD ASVLGMSF
Sbjct: 601 EESRRLANIMPNGKPINITDKEIVEMVLFPVVNEACRVLDEGVVVRASDLDTASVLGMSF 660

Query: 658 PSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPL 707
           PSYRGGIVFWAD VG  +VY SLKKWSQ +G+F+KPS+FLEERAT GIPL
Sbjct: 661 PSYRGGIVFWADLVGPKHVYDSLKKWSQRFGDFYKPSKFLEERATGGIPL 710

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445200|ref|XP_002284283.1| PREDICTED: peroxisomal fatty acid beta-oxidation multifunctional protein AIM1 [Vitis vinifera] gi|297738804|emb|CBI28049.3| unnamed protein product [Vitis vinifera]

 Score = 1181 bits (3054), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 573/724 (79%), Positives = 648/724 (89%), Gaps = 3/724 (0%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           M+   VTMEVGNDGVA+IT+ NPPVNALA+ I+AGLK+K+ EA  R+DVKAIV+TG GGR
Sbjct: 1   MSKAEVTMEVGNDGVAVITMSNPPVNALALAIIAGLKEKYAEAMRRNDVKAIVVTGKGGR 60

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           FSGGFDINVFQKVH   D+S +PD S++L+VN +ED KKP VAAVEGLALGGGLE+AM C
Sbjct: 61  FSGGFDINVFQKVHKTADISHLPDASIDLLVNTVEDAKKPSVAAVEGLALGGGLEVAMAC 120

Query: 121 HARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 177
           HARIAAPKTQLGLPEL+LGV+PG   TQRLPRLVGLSKAIEMM LSKSI+SEEG+KLGL+
Sbjct: 121 HARIAAPKTQLGLPELSLGVMPGFGGTQRLPRLVGLSKAIEMMRLSKSISSEEGYKLGLV 180

Query: 178 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 237
           DA+V+SEELLKVSR WALDI  +RKPW+RSLH+T+KLGS+SEA ++LK++R QA+KT P+
Sbjct: 181 DAIVSSEELLKVSRRWALDIVDKRKPWVRSLHQTEKLGSVSEALDILKISRQQARKTVPH 240

Query: 238 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 297
           +PQHQACLDVIEEGIVHGGYSG+LKE KVF +LV+ DT++GL+HVFFAQRATSKVPNVTD
Sbjct: 241 LPQHQACLDVIEEGIVHGGYSGLLKETKVFNKLVLSDTAKGLIHVFFAQRATSKVPNVTD 300

Query: 298 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 357
           IGLKPR V+KVAVIGGGLMGSGIATA I +NIYVVLKEVNSEYLLKGIKTIEANVRGLVT
Sbjct: 301 IGLKPRNVKKVAVIGGGLMGSGIATALITSNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360

Query: 358 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 417
           +GKLTQDKA  AL MLKGVLDYSEFKD+DMVIEAVIE++ LKQKIFSE+EK C PHCILA
Sbjct: 361 KGKLTQDKARKALSMLKGVLDYSEFKDIDMVIEAVIENISLKQKIFSEIEKICSPHCILA 420

Query: 418 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 477
           TNTSTIDLN+VGEKTSSQDRIIGAHFFSPAHVMPLLE+VRTE+TSAQVILDLMTVGK IK
Sbjct: 421 TNTSTIDLNLVGEKTSSQDRIIGAHFFSPAHVMPLLEVVRTEKTSAQVILDLMTVGKAIK 480

Query: 478 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 537
           K+PVVVG+CTGFAVNR FFPY+Q A  LV+LGVD FRID  I +FGLP+GPFQL DL+GY
Sbjct: 481 KIPVVVGSCTGFAVNRTFFPYAQGAHFLVNLGVDPFRIDWVISNFGLPMGPFQLQDLSGY 540

Query: 538 GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPII 597
           GVA A  KEF  AF  R+F+SPLV+LLLK+GRNGK NGKG Y YEKGSKP+PDPSVLPII
Sbjct: 541 GVAVAVGKEFATAFQGRTFESPLVNLLLKNGRNGKQNGKGYYIYEKGSKPRPDPSVLPII 600

Query: 598 EECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSF 657
           EE RRL+NIMPGGKPISV  +EI+EMILFPVVNE+CRVL+EG+VVRASDLD  SVLGMSF
Sbjct: 601 EESRRLANIMPGGKPISVANQEILEMILFPVVNEACRVLDEGVVVRASDLDITSVLGMSF 660

Query: 658 PSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSAPVSSSSTS 717
           PSYRGGIVFWAD VG  Y+YT LKKWS +YG FFKPS +LE+RATKGIPLSAP S+S  S
Sbjct: 661 PSYRGGIVFWADEVGPYYIYTCLKKWSAMYGTFFKPSSYLEQRATKGIPLSAPASASPAS 720

Query: 718 RARL 721
            +RL
Sbjct: 721 NSRL 724

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546439|ref|XP_002514279.1| 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis] gi|223546735|gb|EEF48233.1| 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]

 Score = 1178 bits (3047), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 579/724 (79%), Positives = 648/724 (89%), Gaps = 3/724 (0%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           MA P VTMEVGNDGVA+I++ NPPVNALA+PI+ GLK+KF EA  R DV+AIVLTG  GR
Sbjct: 1   MAKPHVTMEVGNDGVAVISMSNPPVNALAVPIIMGLKEKFTEAARRKDVQAIVLTGKNGR 60

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           FSGGFDI+V QKVH  GD S++PDVSV+LVVN IEDCKKP+VAAVEGLALGGGLELAMGC
Sbjct: 61  FSGGFDISVMQKVHQTGDASILPDVSVDLVVNAIEDCKKPVVAAVEGLALGGGLELAMGC 120

Query: 121 HARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 177
           HARI APKTQLGLPEL+LG+IPG   TQRLPRLVGL KAI+MML SK I SEEG KLGL+
Sbjct: 121 HARIVAPKTQLGLPELSLGIIPGFGGTQRLPRLVGLPKAIQMMLTSKPIMSEEGKKLGLV 180

Query: 178 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 237
           D +V+S+ELLKVSR WALDI  RRKPW+RSLH TDKLGSLSEA E+LK AR QAKKTAPN
Sbjct: 181 DVIVSSQELLKVSRQWALDIKERRKPWMRSLHMTDKLGSLSEALELLKAARQQAKKTAPN 240

Query: 238 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 297
           MPQHQACLDVIE+G+VHGGYSGVLKEAKVFKELV+ DT++ L+HVFFAQR TSKVPNV+D
Sbjct: 241 MPQHQACLDVIEDGVVHGGYSGVLKEAKVFKELVISDTAKSLIHVFFAQRTTSKVPNVSD 300

Query: 298 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 357
           IGLKPR ++KVAVIGGGLMGSGI TA I + IYVVLKE+NSEYLLKGIK +EANVRGLVT
Sbjct: 301 IGLKPRQIKKVAVIGGGLMGSGIITALITSGIYVVLKEINSEYLLKGIKMVEANVRGLVT 360

Query: 358 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 417
           RGKL+ DKA+ AL MLKGVLDYS+F+DVDMVIEAVIES+PLKQKIFSE+EKACPPHCILA
Sbjct: 361 RGKLSPDKADKALSMLKGVLDYSDFRDVDMVIEAVIESIPLKQKIFSEIEKACPPHCILA 420

Query: 418 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 477
           TNTSTIDLN+VG+KTS+QD IIGAHFFSPAH+MPLLEIVRT++TS Q ILDLMTVGK IK
Sbjct: 421 TNTSTIDLNLVGKKTSAQDCIIGAHFFSPAHIMPLLEIVRTDKTSPQAILDLMTVGKSIK 480

Query: 478 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 537
           KV VVVGNCTGFAVNR FFPY+Q A LLV+LGVDVFRID  I +FGLP+GP QL DLAGY
Sbjct: 481 KVSVVVGNCTGFAVNRTFFPYAQGAHLLVNLGVDVFRIDRVICNFGLPMGPLQLQDLAGY 540

Query: 538 GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPII 597
           GVA A  KEF  AFPDR+F+SPLVDLL+KSGRNGK NGKG Y YEKGSKPKPDPSV+PII
Sbjct: 541 GVAVAVGKEFATAFPDRTFKSPLVDLLIKSGRNGKNNGKGYYIYEKGSKPKPDPSVIPII 600

Query: 598 EECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSF 657
           +E +RL+NIMP GKPIS++++EIVEMI FP+VNE+CRVLEEG+VVRASDLD ASVLGMSF
Sbjct: 601 QESQRLTNIMPNGKPISISDQEIVEMIFFPIVNEACRVLEEGVVVRASDLDIASVLGMSF 660

Query: 658 PSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSAPVSSSSTS 717
           PSYRGGIVFWAD VG  ++YTSLKKWS LYGNF+KPSRFLEERA KG+PLSAPVSSS  S
Sbjct: 661 PSYRGGIVFWADTVGPKHIYTSLKKWSLLYGNFYKPSRFLEERALKGMPLSAPVSSSPGS 720

Query: 718 RARL 721
           R+R+
Sbjct: 721 RSRM 724

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|315419009|gb|ADU15551.1| MFP [Gossypium hirsutum]

 Score = 1174 bits (3037), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 585/725 (80%), Positives = 654/725 (90%), Gaps = 8/725 (1%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           M+  +VTMEVGNDGVA+IT+ NPPVNALAIPI+ GLK+KF EAT RDDVKAIVLTG GGR
Sbjct: 1   MSQSKVTMEVGNDGVAVITISNPPVNALAIPIIDGLKEKFAEATRRDDVKAIVLTGKGGR 60

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           FSGGFDINVF KVHG GDVS+MPDVSV+LV N +EDCKKPIVAAVEGLALGGGLE AMGC
Sbjct: 61  FSGGFDINVFTKVHGTGDVSIMPDVSVDLVTNAVEDCKKPIVAAVEGLALGGGLEFAMGC 120

Query: 121 HARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 177
           HARIAAP+TQLGLPEL+LGVIPG   TQRLPRLVGLSKAIEMML SK I SEEG KLGLI
Sbjct: 121 HARIAAPRTQLGLPELSLGVIPGFGGTQRLPRLVGLSKAIEMMLSSKPIMSEEGKKLGLI 180

Query: 178 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 237
           DA+V S+ELLKVS  WALD+A RRKPW+RSLHRTDK+GSLSEAREVL++ARLQAKKTAPN
Sbjct: 181 DALVPSKELLKVSCAWALDMAERRKPWLRSLHRTDKIGSLSEAREVLRMARLQAKKTAPN 240

Query: 238 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 297
           +PQHQ CLDVIEEGIVHGGYSGVLKEAKVFKE+V+ DTSRGLVHVF AQRATSKVPNVTD
Sbjct: 241 LPQHQVCLDVIEEGIVHGGYSGVLKEAKVFKEIVLSDTSRGLVHVFLAQRATSKVPNVTD 300

Query: 298 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 357
           +GLKPR V+KVA+IGGGLMGSGIATA I+NNI+VVLKEVNSEYLLKGIKT+EANVRGL  
Sbjct: 301 VGLKPRQVKKVAIIGGGLMGSGIATALIVNNIFVVLKEVNSEYLLKGIKTVEANVRGLAN 360

Query: 358 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 417
           RGK+T+DKA  AL MLKGVLDYSEFKDVDMVIEAV+E+V LKQKIFSE+EKACPPHCILA
Sbjct: 361 RGKMTKDKAEKALSMLKGVLDYSEFKDVDMVIEAVVENVALKQKIFSEIEKACPPHCILA 420

Query: 418 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 477
           TNTSTIDLN++GEK +SQDR++GAHFFSPAH+MPLLE VRT++ S Q+ILDLMTVGK+IK
Sbjct: 421 TNTSTIDLNLIGEKMNSQDRLVGAHFFSPAHLMPLLETVRTQKASPQIILDLMTVGKVIK 480

Query: 478 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIRSFGLPIGPFQLLDLAG 536
           KVPVVVGNCTGFAVNR FFPY+Q   LLVSLGV D +RID  I +FG P+GPFQL DLAG
Sbjct: 481 KVPVVVGNCTGFAVNRTFFPYTQGPHLLVSLGVDDAYRIDRVICNFGFPLGPFQLQDLAG 540

Query: 537 YGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPI 596
           YGVA A  +E+ KAF DR F+SPL++LL K GRNGK NGKG Y YEKGSKPKPDPSVL I
Sbjct: 541 YGVAFAVGQEYAKAFSDRIFKSPLLELLAKDGRNGKNNGKGYYIYEKGSKPKPDPSVLSI 600

Query: 597 IEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMS 656
           IEE RRL+NIMPGGKPISVT++E++EMILFPVVNE+CRVL+EG+VVRASDLD ASVLGMS
Sbjct: 601 IEESRRLTNIMPGGKPISVTDREVLEMILFPVVNEACRVLDEGVVVRASDLDVASVLGMS 660

Query: 657 FPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSAPVSSSST 716
           FPSYRGGIVFWAD VGAN+VY +LKKWS   GN +KPS+FLEERA KGIPLSAP +SS++
Sbjct: 661 FPSYRGGIVFWADMVGANHVYRNLKKWS---GN-YKPSKFLEERAMKGIPLSAPATSSAS 716

Query: 717 SRARL 721
           +++RL
Sbjct: 717 TKSRL 721

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|406365505|gb|AFS41246.1| cinnamoyl-CoA hydratase-dehydrogenase [Petunia x hybrida]

 Score = 1162 bits (3007), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 573/708 (80%), Positives = 635/708 (89%), Gaps = 3/708 (0%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           MA  +VTMEVG DGVA+IT+ NPPVNALAIPI+  LK+K+ EAT R+DVKAIVLTGNGGR
Sbjct: 1   MAQVKVTMEVGTDGVAVITIFNPPVNALAIPIINALKEKWTEATIRNDVKAIVLTGNGGR 60

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           FSGGFDINVFQKVHG GD+S MPDVSV+LVVN +EDCKKP VAA+EGLALGGGLELAMGC
Sbjct: 61  FSGGFDINVFQKVHGTGDISQMPDVSVDLVVNTMEDCKKPAVAAIEGLALGGGLELAMGC 120

Query: 121 HARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 177
           HARIAAP+ QLGLPEL+LGV+PG   TQRLPRL+GLSKA+EMM+ SK I SEEG KLGLI
Sbjct: 121 HARIAAPRAQLGLPELSLGVMPGFGGTQRLPRLIGLSKAVEMMMTSKPIMSEEGKKLGLI 180

Query: 178 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 237
           DA+V S ELLKVSR WALDIA RRKPW+RSLH+TDK+GSLSEAREVLK+AR Q K+TA N
Sbjct: 181 DAIVPSSELLKVSRQWALDIAERRKPWMRSLHKTDKIGSLSEAREVLKVARQQVKQTAKN 240

Query: 238 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 297
           MPQH AC+DVIEEGI+HGGY+GVLKEAKVFK+LV+ +TS+GLVHVFFAQRATSKVPNVTD
Sbjct: 241 MPQHVACIDVIEEGIIHGGYAGVLKEAKVFKDLVLSETSKGLVHVFFAQRATSKVPNVTD 300

Query: 298 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 357
           IGLKPR V+KVAVIGGGLMGSGIATA  L+N +VVLKE+NSEYL KG+K IEANVRGLV 
Sbjct: 301 IGLKPRTVKKVAVIGGGLMGSGIATALALSNTFVVLKEINSEYLQKGMKAIEANVRGLVA 360

Query: 358 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 417
           R KL QDKA+ AL M+KG LDYS+FKDVDMVIEAVIESVPLKQKIFSE+EK CPPHCILA
Sbjct: 361 RKKLPQDKADKALSMVKGALDYSDFKDVDMVIEAVIESVPLKQKIFSEIEKVCPPHCILA 420

Query: 418 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 477
           +NTSTIDLNI+GE T S+DRIIGAHFFSPAH+MPLLEIVRTE+TS Q ILDLM VGK IK
Sbjct: 421 SNTSTIDLNIIGENTRSKDRIIGAHFFSPAHIMPLLEIVRTEKTSTQAILDLMAVGKAIK 480

Query: 478 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 537
           KVPVVVGNCTGFAVNR FFPYSQ A +LV+LGVD +RID+ I SFGLP+GP QL DL GY
Sbjct: 481 KVPVVVGNCTGFAVNRTFFPYSQGAHILVNLGVDAYRIDAQITSFGLPMGPLQLQDLTGY 540

Query: 538 GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPII 597
           GVA A  KEF  AF DR+F+SPL+DLL+KSGRNGK NGKG Y YEKGSKP+PD SVLPII
Sbjct: 541 GVAVAVGKEFGSAFSDRTFKSPLIDLLIKSGRNGKNNGKGFYIYEKGSKPRPDLSVLPII 600

Query: 598 EECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSF 657
           EE RRL+NIMPGGKPISVT++EIVEMILFPVVNE+CRVL+EGIVVRASDLD ASVLGMSF
Sbjct: 601 EESRRLTNIMPGGKPISVTDQEIVEMILFPVVNEACRVLDEGIVVRASDLDVASVLGMSF 660

Query: 658 PSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGI 705
           PSYRGGIVFWAD VGA ++Y SL KWS+LYGNFFKPSRFLEERATKGI
Sbjct: 661 PSYRGGIVFWADTVGAGHIYKSLTKWSELYGNFFKPSRFLEERATKGI 708

Source: Petunia x hybrida

Species: Petunia x hybrida

Genus: Petunia

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520511|ref|XP_003528905.1| PREDICTED: peroxisomal fatty acid beta-oxidation multifunctional protein AIM1-like [Glycine max]

 Score = 1152 bits (2979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 571/724 (78%), Positives = 643/724 (88%), Gaps = 3/724 (0%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           MA P+V  EVG DGVA+IT+ NPPVNALAIPI+ GLK++F+EA  R+DVKAIVLTG GGR
Sbjct: 1   MALPKVDFEVGTDGVAVITMCNPPVNALAIPIIMGLKNRFDEAARRNDVKAIVLTGKGGR 60

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           FSGGFDI+V QKVH  GD S +PDVSVELVVN IED KKP+VAAVEGLALGGGLELAMGC
Sbjct: 61  FSGGFDISVMQKVHQTGDSSHLPDVSVELVVNSIEDSKKPVVAAVEGLALGGGLELAMGC 120

Query: 121 HARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 177
           HAR+AAP+ QLGLPELTLG+IPG   TQRLPRL+GLSKA+EMML SK ITSEEG K GLI
Sbjct: 121 HARVAAPRAQLGLPELTLGIIPGFGGTQRLPRLIGLSKAVEMMLTSKPITSEEGRKFGLI 180

Query: 178 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 237
           DA+V+SEELLK SRLWAL+I  RRKPWIRSLHRTDK+GSLSEAR VLK AR Q KKTAP+
Sbjct: 181 DAIVSSEELLKASRLWALEIGERRKPWIRSLHRTDKIGSLSEARAVLKTARQQVKKTAPH 240

Query: 238 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 297
           +PQ QAC+DVIE GIVHGGYSGVLKEA+VFK+LV+ DTS+GL++VFFAQRA SKVP VTD
Sbjct: 241 LPQQQACVDVIEHGIVHGGYSGVLKEAEVFKQLVISDTSKGLINVFFAQRAISKVPGVTD 300

Query: 298 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 357
           IGLKPR V+K AVIGGGLMGSGIATA IL NI V+LKE+NSE+LLKGIKTIEANV GLV 
Sbjct: 301 IGLKPRNVKKAAVIGGGLMGSGIATALILGNIRVILKEINSEFLLKGIKTIEANVNGLVR 360

Query: 358 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 417
           RGKLT+ KA+ AL +LKGVLDYSEFKDVD+VIEAVIE++ LKQ IF +LEK CPPHCILA
Sbjct: 361 RGKLTKQKADAALSLLKGVLDYSEFKDVDLVIEAVIENISLKQTIFGDLEKICPPHCILA 420

Query: 418 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 477
           +NTSTIDL++VG+ TSSQDRI GAHFFSPAH+MPLLEI+RT++TSAQVI+DL+TVGKIIK
Sbjct: 421 SNTSTIDLDVVGKTTSSQDRIAGAHFFSPAHIMPLLEIIRTDKTSAQVIVDLITVGKIIK 480

Query: 478 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 537
           K PVVVGNCTGFAVN+ FFPYSQ A LLV+LGVDVFRID  I +FG PIGPFQL DLAGY
Sbjct: 481 KAPVVVGNCTGFAVNKTFFPYSQGAHLLVNLGVDVFRIDRLICNFGFPIGPFQLQDLAGY 540

Query: 538 GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPII 597
           GVA ATSK F  AF DR F+SPL+DLL+KSGRNGK NGKG Y YEKG KPKPDPS+LPII
Sbjct: 541 GVAVATSKVFADAFSDRIFKSPLLDLLIKSGRNGKNNGKGYYIYEKGGKPKPDPSILPII 600

Query: 598 EECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSF 657
           EE RRL NIMP GKPIS+T++EIVEMILFPVVNE+CRVLE+G+V+RASDLD ASVLGMSF
Sbjct: 601 EESRRLCNIMPNGKPISITDQEIVEMILFPVVNEACRVLEDGVVIRASDLDIASVLGMSF 660

Query: 658 PSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSAPVSSSSTS 717
           P+YRGGIVFWAD VGAN+++TSLKKW+QLYGNF+KPSR+LEERA KGIPLSAP SS+  S
Sbjct: 661 PNYRGGIVFWADLVGANHIFTSLKKWAQLYGNFYKPSRYLEERALKGIPLSAPASSTPKS 720

Query: 718 RARL 721
            ARL
Sbjct: 721 MARL 724

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357500631|ref|XP_003620604.1| Peroxisomal fatty acid beta-oxidation multifunctional protein [Medicago truncatula] gi|355495619|gb|AES76822.1| Peroxisomal fatty acid beta-oxidation multifunctional protein [Medicago truncatula]

 Score = 1148 bits (2970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 571/724 (78%), Positives = 641/724 (88%), Gaps = 5/724 (0%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           MA+ +V  EVGNDGVA+IT+ NPPVNALAIPI+ GLK+KFEEA  R+DVKAIVLTG GGR
Sbjct: 1   MASVKVDFEVGNDGVAVITMCNPPVNALAIPIIRGLKNKFEEAARRNDVKAIVLTGKGGR 60

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           FSGGFDI+V QKVH  GD++L+PDVSVELVVN IED KKP+VAAVEGLALGGGLELAMGC
Sbjct: 61  FSGGFDISVMQKVHQTGDITLVPDVSVELVVNSIEDSKKPVVAAVEGLALGGGLELAMGC 120

Query: 121 HARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 177
           HAR+AAPK QLGLPELTLG+IPG   TQRLPRLVG SKA+EMML SK IT+EEG KLGLI
Sbjct: 121 HARVAAPKAQLGLPELTLGIIPGFGGTQRLPRLVGTSKAVEMMLTSKPITAEEGQKLGLI 180

Query: 178 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 237
           DA+V+  ELLK+SR WAL+IA +R+PWIRSLH TDKLGS  +AREVL+ AR   KKTAP+
Sbjct: 181 DAIVSPAELLKLSRQWALEIAEQRRPWIRSLHITDKLGS--DAREVLRTARQHVKKTAPH 238

Query: 238 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 297
           +PQ QAC+DVIE GI+HGGYSGVL+EA+VFK+LV+ +T++GL+HVFFAQR  SK+P VTD
Sbjct: 239 LPQQQACIDVIEHGILHGGYSGVLREAEVFKKLVLSETAKGLIHVFFAQRTISKIPGVTD 298

Query: 298 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 357
           IGLKPR VRK AVIGGGLMGSGIATA IL NI V+LKEVNSEYL KGIKTIEANVRGLVT
Sbjct: 299 IGLKPRNVRKAAVIGGGLMGSGIATALILGNIRVILKEVNSEYLQKGIKTIEANVRGLVT 358

Query: 358 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 417
           R KLTQ KA  AL +LKGVLDY+EFKDVDMVIEAVIE V LKQ IFS+LEK CPPHCILA
Sbjct: 359 RKKLTQQKAEGALSLLKGVLDYAEFKDVDMVIEAVIEKVSLKQDIFSDLEKICPPHCILA 418

Query: 418 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 477
           +NTSTIDLNI+GEK SSQDR+IGAHFFSPAH+MPLLEIVRT +TSAQVILDL+TVGKIIK
Sbjct: 419 SNTSTIDLNIIGEKISSQDRVIGAHFFSPAHIMPLLEIVRTNKTSAQVILDLVTVGKIIK 478

Query: 478 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 537
           K PVVVGNCTGFAVNR FFPY+Q A  L +LGVDVFRID  I +FGLP+GPFQL DL+GY
Sbjct: 479 KSPVVVGNCTGFAVNRTFFPYAQGAHFLANLGVDVFRIDRLISNFGLPMGPFQLQDLSGY 538

Query: 538 GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPII 597
           GVA A  KEF  +F  R+F +PL+DLL+KSGRNGK NGKG Y YEKGSKPKPDPSVLPI+
Sbjct: 539 GVAVAVGKEFAGSFAGRTFPTPLLDLLIKSGRNGKNNGKGYYIYEKGSKPKPDPSVLPIV 598

Query: 598 EECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSF 657
           EE RRLSNIMP GKPIS+T++EIVEMILFPVVNE+CRVLEEGIV+RASDLD ASVLGMSF
Sbjct: 599 EESRRLSNIMPNGKPISITDQEIVEMILFPVVNEACRVLEEGIVIRASDLDIASVLGMSF 658

Query: 658 PSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSAPVSSSSTS 717
           PSYRGGIVFWAD VGA ++Y+SLKKWSQLYGNF+KPSR+LEERATKGIPLSAP SS+ TS
Sbjct: 659 PSYRGGIVFWADLVGAKHIYSSLKKWSQLYGNFYKPSRYLEERATKGIPLSAPASSNPTS 718

Query: 718 RARL 721
           +ARL
Sbjct: 719 KARL 722

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443155|ref|XP_004139346.1| PREDICTED: peroxisomal fatty acid beta-oxidation multifunctional protein AIM1-like [Cucumis sativus]

 Score = 1137 bits (2942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/724 (75%), Positives = 629/724 (86%), Gaps = 3/724 (0%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           MA P VTMEVGNDGVA+IT+ NPPVNALA  +   LK KFEEA  R+DVKA+VLTG GGR
Sbjct: 1   MAEPSVTMEVGNDGVALITMSNPPVNALARSMFPALKSKFEEAMRRNDVKAVVLTGKGGR 60

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           FSGGFDINVF+ +H  GD SL+PDVSV++ VN +ED KKPIVAA+EGLALGGGLE+A+  
Sbjct: 61  FSGGFDINVFEMIHKTGDTSLLPDVSVDIAVNTMEDAKKPIVAAIEGLALGGGLEMALAS 120

Query: 121 HARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 177
           HARIA PK QLGLPEL+LGVIPG   TQRLPRL+GL KAIEMMLLSK+ITSEEG KLGLI
Sbjct: 121 HARIAVPKVQLGLPELSLGVIPGFGGTQRLPRLIGLPKAIEMMLLSKTITSEEGEKLGLI 180

Query: 178 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 237
           DAVV+  EL+KV+R WALDIA RRKPWIR+LHRTD++GSL+EAR VLK AR QAKK APN
Sbjct: 181 DAVVSPNELMKVARKWALDIAERRKPWIRTLHRTDRIGSLAEARSVLKSAREQAKKIAPN 240

Query: 238 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 297
            PQ  AC+DVIE+GI+HGGYSGVLKE KVF+ELV  DT++GLVHVFF+QR  SKVPNVTD
Sbjct: 241 TPQQLACIDVIEDGIIHGGYSGVLKEDKVFRELVATDTAKGLVHVFFSQRLISKVPNVTD 300

Query: 298 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 357
            GLKPR V+KVA+IGGGLMGSGIATA IL+NI+VV+KE+N EYL KGIKTIEAN+RGLV 
Sbjct: 301 RGLKPRNVKKVAIIGGGLMGSGIATAFILSNIHVVVKEINPEYLQKGIKTIEANLRGLVV 360

Query: 358 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 417
           +GKLTQDKAN AL +LKG LDYS+FKDVDMVIEA +E+VPLKQKIFSE+EK CP HCILA
Sbjct: 361 KGKLTQDKANKALLILKGSLDYSDFKDVDMVIEAAVENVPLKQKIFSEIEKICPAHCILA 420

Query: 418 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 477
           TNTSTIDLN+VGEKT S DRIIGAHFFSPAHVMPLLEIVRTE+TS QVILDLMTVGKIIK
Sbjct: 421 TNTSTIDLNLVGEKTRSMDRIIGAHFFSPAHVMPLLEIVRTEKTSPQVILDLMTVGKIIK 480

Query: 478 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 537
           KVPVVVGNCTGFAVNR FFPY Q+A+LLV LGVD+FRID  I +FGLP+GPFQL DL+GY
Sbjct: 481 KVPVVVGNCTGFAVNRTFFPYVQAAQLLVHLGVDLFRIDRVITNFGLPLGPFQLQDLSGY 540

Query: 538 GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPII 597
           GVA A  KEF  +FPDR   SPLVDL+ K+GR+GK NGKG Y YEKGS+PKPDPS+ PI+
Sbjct: 541 GVATAVGKEFSASFPDRVLFSPLVDLMRKNGRDGKNNGKGYYIYEKGSRPKPDPSIAPIL 600

Query: 598 EECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSF 657
           EE RR++N+MP GKPI++++++I+EM+LFPVVNE CRV+EEGIVVR SDL+ A+VLGMSF
Sbjct: 601 EETRRIANLMPSGKPIAISDQQILEMVLFPVVNEGCRVVEEGIVVRPSDLNVATVLGMSF 660

Query: 658 PSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSAPVSSSSTS 717
           PSYRGG++FW D VG  +VY SLKKWS+ YG+FFKPS++LEERA KGIPLS  +S ++ S
Sbjct: 661 PSYRGGLLFWGDLVGPKHVYASLKKWSEQYGDFFKPSKYLEERAAKGIPLSEAISENAAS 720

Query: 718 RARL 721
           R++L
Sbjct: 721 RSKL 724

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531273|ref|XP_003534202.1| PREDICTED: peroxisomal fatty acid beta-oxidation multifunctional protein AIM1-like [Glycine max]

 Score = 1135 bits (2936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 565/724 (78%), Positives = 642/724 (88%), Gaps = 3/724 (0%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           MA P+V  EVG DGVA+IT+ NPPVNALAIPI+ GLK++F+EA  R+DVKAIVLTG GGR
Sbjct: 1   MALPKVDFEVGADGVAVITMCNPPVNALAIPIIMGLKNRFDEAARRNDVKAIVLTGKGGR 60

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           FSGGFDI+V QKVH  GD S +PDVSVELVVN IED KKP+VAAV GLALGGGLELAMGC
Sbjct: 61  FSGGFDISVMQKVHRTGDSSHLPDVSVELVVNSIEDSKKPVVAAVAGLALGGGLELAMGC 120

Query: 121 HARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 177
           HAR+AAP+ QLGLPELTLG+IPG   TQRLPRL+GLSKA+EMML SK ITSEEG KLGLI
Sbjct: 121 HARVAAPRAQLGLPELTLGIIPGFGGTQRLPRLIGLSKAVEMMLTSKPITSEEGRKLGLI 180

Query: 178 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 237
           DA+V+SEELL  SRLWAL+I  R KPW+RSLHRTDK+GSLSEAREVL+ AR Q KKT P+
Sbjct: 181 DAIVSSEELLNASRLWALEIGERCKPWVRSLHRTDKIGSLSEAREVLRTARQQVKKTVPH 240

Query: 238 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 297
           +PQ  AC+DVIE GIVHGGYSGVLKEA+VFK+LV+ DT++GL++VFF+QRA SKVP VTD
Sbjct: 241 LPQQLACVDVIEHGIVHGGYSGVLKEAEVFKQLVVSDTAKGLINVFFSQRAISKVPGVTD 300

Query: 298 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 357
           IGLKPR V+K AVIGGGLMGSGIATA IL NI+V+LKE+N E+LLKGIKTIEANV GLV 
Sbjct: 301 IGLKPRNVKKAAVIGGGLMGSGIATALILGNIHVILKEINPEFLLKGIKTIEANVNGLVR 360

Query: 358 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 417
           RGKLT+ KA+ AL +L+GVLDYSEFKDVD+VIEAVIE++ LKQ IFS+LEK CPPHCILA
Sbjct: 361 RGKLTKQKADAALSLLRGVLDYSEFKDVDLVIEAVIENISLKQTIFSDLEKICPPHCILA 420

Query: 418 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 477
           +NTSTIDL++VG+ TSSQ+RI GAHFFSPAH+MPLLEI+RT++TSAQVILDL+TVGKIIK
Sbjct: 421 SNTSTIDLDVVGKTTSSQNRIAGAHFFSPAHIMPLLEIIRTDKTSAQVILDLITVGKIIK 480

Query: 478 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 537
           K PVVVGNCTGFAVN+ FFPYSQ A LLV+LGVDVFRID+ IR+FG PIGPFQL DLAGY
Sbjct: 481 KTPVVVGNCTGFAVNKTFFPYSQGAHLLVNLGVDVFRIDTLIRNFGFPIGPFQLQDLAGY 540

Query: 538 GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPII 597
           GVA ATSK F  AF DR F+SPL+DLL+KSGRNGK NGKG Y YEK  KPKPDPS+LPII
Sbjct: 541 GVAVATSKVFADAFSDRIFKSPLLDLLIKSGRNGKNNGKGYYIYEKAGKPKPDPSILPII 600

Query: 598 EECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSF 657
           EE RRL NIMP GKPISVT++EIVEMILFPVVNE+CRVLE+G+V+RASDLD ASVLGMSF
Sbjct: 601 EESRRLCNIMPNGKPISVTDQEIVEMILFPVVNEACRVLEDGVVIRASDLDIASVLGMSF 660

Query: 658 PSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSAPVSSSSTS 717
           P+YRGGIVFWAD VGAN++YTSLKKW+QLYGNF+KPSR+LEERA KGIPLSAP SS+  S
Sbjct: 661 PNYRGGIVFWADLVGANHIYTSLKKWAQLYGNFYKPSRYLEERALKGIPLSAPASSTPKS 720

Query: 718 RARL 721
            ARL
Sbjct: 721 MARL 724

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449515444|ref|XP_004164759.1| PREDICTED: peroxisomal fatty acid beta-oxidation multifunctional protein AIM1-like [Cucumis sativus]

 Score = 1123 bits (2904), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 540/724 (74%), Positives = 624/724 (86%), Gaps = 8/724 (1%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           MA P VTMEVGNDGVA+IT+ NPPVNALA  +   LK KFEEA  R+DVKA+VLTG GGR
Sbjct: 1   MAEPSVTMEVGNDGVALITMSNPPVNALARSMFPALKSKFEEAMRRNDVKAVVLTGKGGR 60

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           FSGGFDINVF+ +H  GD SL+PDVSV++ VN +ED KKPIVAA+EGLALGGGLE+A+  
Sbjct: 61  FSGGFDINVFEMIHKTGDTSLLPDVSVDIAVNTMEDAKKPIVAAIEGLALGGGLEMALAS 120

Query: 121 HARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 177
           HARIA PK QLGLPEL+LGVIPG   TQRLPRL+GL KAIEMMLLSK+ITSEEG KLGLI
Sbjct: 121 HARIAVPKVQLGLPELSLGVIPGFGGTQRLPRLIGLPKAIEMMLLSKTITSEEGEKLGLI 180

Query: 178 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 237
           DAVV+  EL+KV+R WALDIA RRKPWIR+LHRTD++GSL+EAR VLK AR QAKK APN
Sbjct: 181 DAVVSPNELMKVARKWALDIAERRKPWIRTLHRTDRIGSLAEARSVLKSAREQAKKIAPN 240

Query: 238 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 297
            PQ  AC+DVIE+GI+HGGYSGVLKE KVF+ELV  DT++GLVHVFF       VPNVTD
Sbjct: 241 TPQQLACIDVIEDGIIHGGYSGVLKEDKVFRELVATDTAKGLVHVFFPS-----VPNVTD 295

Query: 298 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 357
            GLKPR V+KVA+IGGGLMGSGIATA IL+NI+VV+KE+N EYL KGIKTIEAN+RGLV 
Sbjct: 296 RGLKPRNVKKVAIIGGGLMGSGIATAFILSNIHVVVKEINPEYLQKGIKTIEANLRGLVV 355

Query: 358 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 417
           +GKLTQDKAN AL +LKG LDYS+FKDVDMVIEA +E+VPLKQKIFSE+EK CP HCILA
Sbjct: 356 KGKLTQDKANKALLILKGSLDYSDFKDVDMVIEAAVENVPLKQKIFSEIEKICPAHCILA 415

Query: 418 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 477
           TNTSTIDLN+VGEKT S DRIIGAHFFSPAHVMPLLEIVRTE+TS QVILDLMTVGKIIK
Sbjct: 416 TNTSTIDLNLVGEKTRSMDRIIGAHFFSPAHVMPLLEIVRTEKTSPQVILDLMTVGKIIK 475

Query: 478 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 537
           KVPVVVGNCTGFAVNR FFPY Q+A+LLV LGVD+FRID  I +FGLP+GPFQL DL+GY
Sbjct: 476 KVPVVVGNCTGFAVNRTFFPYVQAAQLLVHLGVDLFRIDRVITNFGLPLGPFQLQDLSGY 535

Query: 538 GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPII 597
           GVA A  KEF  +FPDR   SPLVDL+ K+GR+GK NGKG Y YEKGS+PKPDPS+ PI+
Sbjct: 536 GVATAVGKEFSASFPDRVLFSPLVDLMRKNGRDGKNNGKGYYIYEKGSRPKPDPSIAPIL 595

Query: 598 EECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSF 657
           EE RR++N+MP GKPI++++++I+EM+LFPVVNE CRV+EEGIVVR SDL+ A+VLGMSF
Sbjct: 596 EETRRIANLMPSGKPIAISDQQILEMVLFPVVNEGCRVVEEGIVVRPSDLNVATVLGMSF 655

Query: 658 PSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSAPVSSSSTS 717
           PSYRGG++FW D VG  +VY SLKKWS+ YG+FFKPS++LEERA KGIPLS  +S ++ S
Sbjct: 656 PSYRGGLLFWGDLVGPKHVYASLKKWSEQYGDFFKPSKYLEERAAKGIPLSEAISENAAS 715

Query: 718 RARL 721
           R++L
Sbjct: 716 RSKL 719

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	721
TAIR|locus:2119891	721	AIM1 "ABNORMAL INFLORESCENCE M	0.970	0.970	0.712	3.5e-272
UNIPROTKB|Q8W1L6	726	MFP "Peroxisomal fatty acid be	0.975	0.968	0.665	1.2e-253
UNIPROTKB|Q39659	725	Q39659 "Glyoxysomal fatty acid	0.975	0.969	0.557	1.4e-213
UNIPROTKB|O49809	725	O49809 "Glyoxysomal fatty acid	0.968	0.962	0.558	8.3e-209
TAIR|locus:2077542	725	MFP2 "multifunctional protein	0.969	0.964	0.553	1.2e-207
TIGR_CMR|SPO_0772	698	SPO_0772 "enoyl-CoA hydratase/	0.925	0.955	0.330	9.3e-91
ZFIN|ZDB-GENE-040426-2581	718	ehhadh "enoyl-Coenzyme A, hydr	0.932	0.935	0.330	5.3e-88
ZFIN|ZDB-GENE-031222-5	761	hadhaa "hydroxyacyl-Coenzyme A	0.782	0.741	0.306	2.4e-85
UNIPROTKB|P77399	714	fadJ "FadJ monomer" [Escherich	0.941	0.950	0.305	1.7e-84
UNIPROTKB|P40939	763	HADHA "Trifunctional enzyme su	0.762	0.720	0.3	2.8e-84

TAIR|locus:2119891 AIM1 "ABNORMAL INFLORESCENCE MERISTEM" [Arabidopsis thaliana (taxid:3702)]

 Score = 2617 (926.3 bits), Expect = 3.5e-272, P = 3.5e-272
 Identities = 501/703 (71%), Positives = 592/703 (84%)

Query:     6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF 65
             VTMEVGNDGVA+IT+ NPPVN+LA PI++GLK+KF +A  R+DVKAIVL GN GRFSGGF
Sbjct:     7 VTMEVGNDGVAVITISNPPVNSLASPIISGLKEKFRDANQRNDVKAIVLIGNNGRFSGGF 66

Query:    66 DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIA 125
             DINVFQ+VH  GD+SLMP+VSVELV NL+ED +KP+                M CHAR+A
Sbjct:    67 DINVFQQVHKTGDLSLMPEVSVELVCNLMEDSRKPVVAAVEGLALGGGLELAMACHARVA 126

Query:   126 APKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 182
             APK QLGLPELTLGVIPG   TQRLPRLVGL+KA +M+LLSKSI+SEEG KLGLIDA+V 
Sbjct:   127 APKAQLGLPELTLGVIPGFGGTQRLPRLVGLAKATDMILLSKSISSEEGHKLGLIDALVP 186

Query:   183 SEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ 242
               ++L  SR WALDIA  RKP+++SLHRTDK+GSLSEAR +LK +R  AKK APNMPQH 
Sbjct:   187 PGDVLSTSRKWALDIAEGRKPFLQSLHRTDKIGSLSEARAILKNSRQLAKKIAPNMPQHH 246

Query:   243 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKP 302
             AC++VIEEGI+HGGYSGVLKEA+VFK+LV+ DT++GLVHVFFAQRATSKVPNVTD+GLKP
Sbjct:   247 ACIEVIEEGIIHGGYSGVLKEAEVFKQLVLSDTAKGLVHVFFAQRATSKVPNVTDVGLKP 306

Query:   303 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT 362
             R ++KVAVIGGGLMGSGIATA +L+NI VVLKE+NSE+L+KGIK++EAN++ LV+RGKLT
Sbjct:   307 RPIKKVAVIGGGLMGSGIATALLLSNIRVVLKEINSEFLMKGIKSVEANMKSLVSRGKLT 366

Query:   363 QDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 422
             QDKA  AL + KGVLDY+EF DVDMVIEAVIE++ LKQ IF E+EK C PHCILA+NTST
Sbjct:   367 QDKAGKALSLFKGVLDYTEFNDVDMVIEAVIENIQLKQNIFKEIEKVCSPHCILASNTST 426

Query:   423 IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXX 482
             IDL+++GEKT+S+DRI+GAHFFSPAH+MPLLEIVR++ TSAQVILDLM            
Sbjct:   427 IDLDVIGEKTNSKDRIVGAHFFSPAHLMPLLEIVRSKNTSAQVILDLMAVGKAIKKVPVV 486

Query:   483 XXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAA 542
               NC GFAVNR FFPYSQ+A +L +LGVD+FRIDS I SFGLP+GPFQL DLAG+G+  A
Sbjct:   487 VGNCIGFAVNRTFFPYSQAAHMLANLGVDLFRIDSVITSFGLPLGPFQLGDLAGHGIGLA 546

Query:   543 TSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEECRR 602
                 + K + DR F+SP+ +LLLKSGRNGK NG+G Y YEKGSKPKPDPSVL I+E+ R+
Sbjct:   547 VGPIYAKVYGDRMFRSPMTELLLKSGRNGKINGRGYYIYEKGSKPKPDPSVLSIVEKSRK 606

Query:   603 LSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRG 662
             L+NIMPGGKPISVT+KEIVEMILFPVVNE+CRVL+EG+V+RASDLD ASVLGMSFPSYRG
Sbjct:   607 LTNIMPGGKPISVTDKEIVEMILFPVVNEACRVLDEGVVIRASDLDIASVLGMSFPSYRG 666

Query:   663 GIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGI 705
             GIVFWAD VG  Y+Y  LKK S+ YG+FFKPSR+LEERA  G+
Sbjct:   667 GIVFWADTVGPKYIYERLKKLSETYGSFFKPSRYLEERAMNGM 709

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IMP;IDA

GO:0006635 "fatty acid beta-oxidation" evidence=ISS

GO:0007275 "multicellular organismal development" evidence=IMP

GO:0009845 "seed germination" evidence=IMP

GO:0009908 "flower development" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=IMP

GO:0005777 "peroxisome" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

UNIPROTKB|Q8W1L6 MFP "Peroxisomal fatty acid beta-oxidation multifunctional protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 2442 (864.7 bits), Expect = 1.2e-253, P = 1.2e-253
 Identities = 470/706 (66%), Positives = 567/706 (80%)

Query:     3 APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFS 62
             A RVTMEVG DGVA++T+ NPPVNAL   I+ GLK+K+ EA  RDDVKAIVLTG GG+F 
Sbjct:     4 AIRVTMEVGADGVAVVTICNPPVNALHPIIIQGLKEKYAEAMDRDDVKAIVLTGAGGKFC 63

Query:    63 GGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHA 122
             GGFDINVF +VH  G+VSLMPDVSVELV NL+E  KKP                 MGCHA
Sbjct:    64 GGFDINVFTEVHKTGNVSLMPDVSVELVSNLMEAGKKPSVAAIQGLALGGGLELTMGCHA 123

Query:   123 RIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDA 179
             RI+ P+ QLGLPELTLG+IPG   TQRLPRLVGL KAIEMML SK IT++EG + GL+DA
Sbjct:   124 RISTPEAQLGLPELTLGIIPGFGGTQRLPRLVGLPKAIEMMLQSKFITAKEGKEGGLVDA 183

Query:   180 VVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 239
             + + +EL+K+SRLWAL+IA  RKPWIRSL RTD+LGSLSEAR VL  AR QAKK A N+P
Sbjct:   184 LCSPDELIKMSRLWALEIANYRKPWIRSLARTDRLGSLSEARSVLNSARQQAKKVAANLP 243

Query:   240 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIG 299
             QHQACLDV+EEG++ GG++GVLKEAKVFKELV+  TS+ LVH FFAQR T+KVP VTD+ 
Sbjct:   244 QHQACLDVMEEGVLCGGHAGVLKEAKVFKELVLSPTSKALVHAFFAQRLTTKVPGVTDVQ 303

Query:   300 LKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRG 359
             LKPR +RKVAVIGGGLMGSGIATA +++N  VVLKEVN ++L +G K I AN+ GLV RG
Sbjct:   304 LKPRKIRKVAVIGGGLMGSGIATALLVSNTSVVLKEVNPQFLQRGQKMIAANLEGLVKRG 363

Query:   360 KLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATN 419
              LT+DK N A+ +LKG LDYS+FKDVDMVIEAVIE +PLKQ IFS+LEK CPPHCILATN
Sbjct:   364 SLTKDKMNKAMSLLKGALDYSDFKDVDMVIEAVIEKIPLKQSIFSDLEKVCPPHCILATN 423

Query:   420 TSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXX 479
             TSTIDLN+VGEKT+SQDRIIGAHFFSPAH+MPLLEIVRTE+TS Q ILDL+T        
Sbjct:   424 TSTIDLNVVGEKTNSQDRIIGAHFFSPAHIMPLLEIVRTEKTSPQAILDLITVGKMIKKV 483

Query:   480 XXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGV 539
                  NCTGFAVNR FFPY+Q + LLVS+G+DVFRID  I SFG+P+GPFQL DLAGYGV
Sbjct:   484 PVVVGNCTGFAVNRTFFPYTQGSHLLVSIGIDVFRIDRVISSFGMPMGPFQLQDLAGYGV 543

Query:   540 AAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEE 599
             A A    +  AF  R+  S LVDL++++GR GK+NGKG Y YEKG KPKPDPSV  +I+E
Sbjct:   544 ALAVKDIYAAAFGTRNLDSNLVDLMVQNGRQGKSNGKGYYLYEKGGKPKPDPSVQVVIDE 603

Query:   600 CRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPS 659
              RR +  MPGGKP+++++++I+EMI FPVVNE+CRV++E +V+RASDLD AS+LGM FP 
Sbjct:   604 YRRCAKTMPGGKPVTLSDQDILEMIFFPVVNEACRVMDENVVIRASDLDIASILGMGFPK 663

Query:   660 YRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGI 705
             +RGG+VFWAD +GA Y+++ L KW+++YG+FFKPS +LE+RA + +
Sbjct:   664 FRGGLVFWADTIGAPYIHSKLSKWTEIYGDFFKPSSYLEDRAKRSL 709

GO:0003729 "mRNA binding" evidence=IDA

GO:0004165 "dodecenoyl-CoA delta-isomerase activity" evidence=ISS

GO:0004300 "enoyl-CoA hydratase activity" evidence=IDA

GO:0005777 "peroxisome" evidence=NAS

GO:0006635 "fatty acid beta-oxidation" evidence=IDA

GO:0008017 "microtubule binding" evidence=IDA

GO:0008692 "3-hydroxybutyryl-CoA epimerase activity" evidence=ISS

GO:0018812 "3-hydroxyacyl-CoA dehydratase activity" evidence=IDA

UNIPROTKB|Q39659 Q39659 "Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a" [Cucumis sativus (taxid:3659)]

 Score = 2064 (731.6 bits), Expect = 1.4e-213, P = 1.4e-213
 Identities = 394/707 (55%), Positives = 517/707 (73%)

Query:     2 AAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF 61
             A  R  MEVG DGVAIIT+INPPVN+L+  ++  L+D +E+A  RDDVKAIV+TG  G+F
Sbjct:     5 AKGRTVMEVGTDGVAIITIINPPVNSLSFDVLFSLRDSYEQALRRDDVKAIVVTGAKGKF 64

Query:    62 SGGFDINVFQKVHGA-GDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGC 120
             SGGFDI  F  + G  G+   + ++S+E++ ++ E  +KP                 M C
Sbjct:    65 SGGFDITAFGVLQGGKGEQPNVRNISIEMITDIFEAARKPAVAAIDGLALGGGLEVAMAC 124

Query:   121 HARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 177
             HARI+ P  QLGLPEL LG+IPG   TQRLPRLVGLSKA+EMML SK I  +E   LGL+
Sbjct:   125 HARISTPTAQLGLPELQLGIIPGFGGTQRLPRLVGLSKALEMMLTSKPIKGQEAHSLGLV 184

Query:   178 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 237
             DA+V  EEL+  +R WAL+I  RR+PW+ SLHRTDKL SL+EAR++  LAR QAKK  PN
Sbjct:   185 DAIVPPEELINTARRWALEILERRRPWVHSLHRTDKLESLAEARKIFNLARAQAKKQYPN 244

Query:   238 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 297
             +    AC+D +E G+V G  +G+ KEA+ F+ L+  DT + L+H+FFAQR+T+KVP VTD
Sbjct:   245 LKHTIACIDAVETGVVSGPRAGLWKEAEEFQGLLHSDTCKSLIHIFFAQRSTTKVPGVTD 304

Query:   298 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 357
             +GL PR ++KVA++GGGLMGSGIATA IL+N +VVLKEVN ++L  GI  + AN++  V 
Sbjct:   305 LGLVPRQIKKVAIVGGGLMGSGIATALILSNYHVVLKEVNDKFLQAGIDRVRANLQSRVK 364

Query:   358 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 417
             +G +T +K   ++ +LKGVL+Y  FKDVDMVIEAVIE+V LKQ+IFS+LEK CPPHC+LA
Sbjct:   365 KGNMTNEKFEKSISLLKGVLNYESFKDVDMVIEAVIENVSLKQQIFSDLEKYCPPHCMLA 424

Query:   418 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXX 477
             TNTSTIDL ++GE+  S+DRIIGAHFFSPAH+MPLLEIVRT+ T+AQVI+DL+       
Sbjct:   425 TNTSTIDLELIGERIKSRDRIIGAHFFSPAHIMPLLEIVRTKHTAAQVIVDLLDVGKNIK 484

Query:   478 XXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGY 537
                    NCTGFAVNR FFPYSQ+A LL   GVD ++ID AI  FG+P+GPF+L DL G+
Sbjct:   485 KTPVVVGNCTGFAVNRMFFPYSQAAILLAEHGVDPYQIDRAISKFGMPMGPFRLCDLVGF 544

Query:   538 GVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPII 597
             GVAAAT+ +F +AFP+R+++S L+ L+ +    G++  KG Y Y+K  K  P+P +   I
Sbjct:   545 GVAAATASQFVQAFPERTYKSMLIPLMQEDKNAGESTRKGFYVYDKNRKAGPNPELKKYI 604

Query:   598 EECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSF 657
             E+ R  S +    K   + EK+IVEMI FPVVNE+CRVL EGI V+A+DLD A V+GM F
Sbjct:   605 EKARNSSGVSVDPKLTKLPEKDIVEMIFFPVVNEACRVLAEGIAVKAADLDIAGVMGMGF 664

Query:   658 PSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKG 704
             PSYRGG++FWAD++G+NY+Y+ L++WS+ YG FFKP  +L ERA +G
Sbjct:   665 PSYRGGLMFWADSLGSNYIYSRLEEWSKQYGGFFKPCGYLAERAVQG 711

GO:0004165 "dodecenoyl-CoA delta-isomerase activity" evidence=IDA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IDA

GO:0006635 "fatty acid beta-oxidation" evidence=IDA

GO:0008692 "3-hydroxybutyryl-CoA epimerase activity" evidence=IDA

GO:0009514 "glyoxysome" evidence=NAS

GO:0018812 "3-hydroxyacyl-CoA dehydratase activity" evidence=IDA

UNIPROTKB|O49809 O49809 "Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a" [Brassica napus (taxid:3708)]

 Score = 2019 (715.8 bits), Expect = 8.3e-209, P = 8.3e-209
 Identities = 392/702 (55%), Positives = 509/702 (72%)

Query:     7 TMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFD 66
             T+EVG DGVA+ITLINPPVN+L+  ++  LK  +EEA SR+DVKAIV+TG  G+FSGGFD
Sbjct:    10 TIEVGADGVAVITLINPPVNSLSFDVLYSLKSNYEEALSRNDVKAIVVTGAKGKFSGGFD 69

Query:    67 INVFQKVH-GAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIA 125
             I+ F ++  G      +  +S++++ +L+E  KKP                 M CHARI+
Sbjct:    70 ISGFGEIQKGTMKEPKVGYISIDILTDLLEAAKKPSVAAIDGLALGGGLELSMACHARIS 129

Query:   126 APKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 182
             AP  QLGLPEL LGVIPG   TQRLPRLVGL+KA+EM+L SK + +EEG  LGLIDAVV 
Sbjct:   130 APGAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGLIDAVVP 189

Query:   183 SEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ 242
               ELL  +R WALDIA RRKPW+ S+ +TDKL  L EARE+LK A+ Q ++ APNM    
Sbjct:   190 PAELLNAARRWALDIAERRKPWVSSVLKTDKLPPLGEAREILKFAKDQTRRQAPNMKHPL 249

Query:   243 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKP 302
              CL+ +E GIV G  +G+ KEA+V  E++ LDT++GL+HVFF+QR T+KVP VTD GL P
Sbjct:   250 MCLEAVEVGIVSGSRAGLEKEAQVGSEVINLDTTKGLIHVFFSQRGTTKVPGVTDRGLVP 309

Query:   303 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT 362
             R + KVA+IGGGLMGSGIATA IL+N  V+LKEVN ++L  GI  ++AN++  V +GK++
Sbjct:   310 RKINKVAIIGGGLMGSGIATALILSNYSVILKEVNEKFLEAGIGRVKANLQSRVKKGKMS 369

Query:   363 QDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 422
             ++K    + +LKG LDY  F+DVDMVIEAVIE++ LKQ+IF++LEK CP HCILA+NTST
Sbjct:   370 KEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTST 429

Query:   423 IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXX 482
             IDLN +GE+T SQDRIIGAHFFSPAHVMPLLEIVRT  TSAQVI+DL+            
Sbjct:   430 IDLNKIGERTKSQDRIIGAHFFSPAHVMPLLEIVRTNHTSAQVIVDLLDVGKKIRKTPVV 489

Query:   483 XXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAA 542
               NCTGFAVNR FFPY+Q+A  LV  G D + ID A+  FG+P+GPF+L DL G+GVA A
Sbjct:   490 VGNCTGFAVNRMFFPYTQAAMFLVEHGTDPYLIDKAVSKFGMPMGPFRLCDLVGFGVAIA 549

Query:   543 TSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEECRR 602
             T+ +F + FP+R+++S ++ L+ +  R G+A  KG Y Y+   K KPDP +   I++ R 
Sbjct:   550 TATQFIENFPERTYKSMIIPLMQEDKRAGEATRKGFYLYDDRRKAKPDPEIKNYIDKARS 609

Query:   603 LSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRG 662
             +S   P  K   ++EKEI+EM  FPVVNE+CRV  EGI V+A+DLD A + GM FP YRG
Sbjct:   610 VSGAKPDPKLEKLSEKEIIEMTFFPVVNEACRVFAEGIAVKAADLDIAGIFGMGFPPYRG 669

Query:   663 GIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKG 704
             GI+FWAD++G+ Y+Y+ L++WS+ YG FFKP  FL ER +KG
Sbjct:   670 GIMFWADSIGSKYIYSKLEEWSKAYGEFFKPCAFLAERGSKG 711

GO:0004165 "dodecenoyl-CoA delta-isomerase activity" evidence=ISS

GO:0004300 "enoyl-CoA hydratase activity" evidence=ISS

GO:0006635 "fatty acid beta-oxidation" evidence=ISS

GO:0008692 "3-hydroxybutyryl-CoA epimerase activity" evidence=ISS

GO:0018812 "3-hydroxyacyl-CoA dehydratase activity" evidence=ISS

TAIR|locus:2077542 MFP2 "multifunctional protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 2008 (711.9 bits), Expect = 1.2e-207, P = 1.2e-207
 Identities = 391/707 (55%), Positives = 509/707 (71%)

Query:     5 RVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
             +  MEVG DGVA+ITLINPPVN+L+  ++  LK  +EEA SR+DVKAIV+TG  GRFSGG
Sbjct:     8 KTVMEVGGDGVAVITLINPPVNSLSFDVLYNLKSNYEEALSRNDVKAIVITGAKGRFSGG 67

Query:    65 FDINVFQKVHGAGDVSLMPD---VSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCH 121
             FDI+ F ++   G+V   P    +S++++ +L+E  +KP                 M CH
Sbjct:    68 FDISGFGEMQ-KGNVK-EPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACH 125

Query:   122 ARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 178
             ARI+AP  QLGLPEL LGVIPG   TQRLPRLVGL+KA+EM+L SK + +EEG  LGLID
Sbjct:   126 ARISAPAAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGLID 185

Query:   179 AVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 238
             AVV   EL+  +R WALDI  RRKPW+ S+ +TDKL  L EARE+L  A+ Q  K APNM
Sbjct:   186 AVVPPAELVTTARRWALDIVGRRKPWVSSVSKTDKLPPLGEAREILTFAKAQTLKRAPNM 245

Query:   239 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDI 298
                  CLD IE GIV G  +G+ KEA+V  ++V LDT++GL+HVFF+QR T+KVP VTD 
Sbjct:   246 KHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKGLIHVFFSQRGTAKVPGVTDR 305

Query:   299 GLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTR 358
             GL PR ++KVA+IGGGLMGSGIATA IL+N  V+LKEVN ++L  GI  ++AN++  V +
Sbjct:   306 GLVPRKIKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRK 365

Query:   359 GKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 418
             G ++Q+K    + +LKG LDY  F+DVDMVIEAVIE++ LKQ+IF++LEK CP HCILA+
Sbjct:   366 GSMSQEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILAS 425

Query:   419 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 478
             NTSTIDLN +GE+T SQDRI+GAHFFSPAH+MPLLEIVRT  TSAQVI+DL+        
Sbjct:   426 NTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKIKK 485

Query:   479 XXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYG 538
                   NCTGFAVNR FFPY+Q+A  LV  G D + ID AI  FG+P+GPF+L DL G+G
Sbjct:   486 TPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRAISKFGMPMGPFRLCDLVGFG 545

Query:   539 VAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIE 598
             VA AT+ +F + F +R+++S ++ L+ +  R G+A  KG Y Y+   K KPDP +   IE
Sbjct:   546 VAIATATQFIENFSERTYKSMIIPLMQEDKRAGEATRKGFYLYDDKRKAKPDPELKKYIE 605

Query:   599 ECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFP 658
             + R +S +    K  +++EK+I+EM  FPVVNE+CRV  EGI V+A+DLD A ++GM FP
Sbjct:   606 KARSISGVKLDPKLANLSEKDIIEMTFFPVVNEACRVFAEGIAVKAADLDIAGIMGMGFP 665

Query:   659 SYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGI 705
              YRGGI+FWAD++G+ Y+Y+ L +WS+ YG FFKP  FL ER +KG+
Sbjct:   666 PYRGGIMFWADSIGSKYIYSRLDEWSKAYGEFFKPCAFLAERGSKGV 712

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA;IDA;IMP

GO:0005737 "cytoplasm" evidence=ISM

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IMP

GO:0005777 "peroxisome" evidence=IDA;TAS

GO:0006635 "fatty acid beta-oxidation" evidence=IEP;RCA

GO:0005730 "nucleolus" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0016508 "long-chain-enoyl-CoA hydratase activity" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0007031 "peroxisome organization" evidence=RCA

GO:0009062 "fatty acid catabolic process" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

TIGR_CMR|SPO_0772 SPO_0772 "enoyl-CoA hydratase/isomerase/3-hydroxyacyl-CoA dehydrogenase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 905 (323.6 bits), Expect = 9.3e-91, P = 9.3e-91
 Identities = 231/698 (33%), Positives = 350/698 (50%)

Query:    15 VAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVH 74
             + I+   NPPVNAL   +  GL    + A + +  + +++ G G  F  G DI  F    
Sbjct:    13 IVILAADNPPVNALGHAVRQGLAVGLDRAEA-EGARGVLIYGTGRTFFAGADIREF---- 67

Query:    75 GAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLP 134
               G     P +  EL  N IE     +                +  H RIA P+ ++GLP
Sbjct:    68 --GKPPKEPHLP-ELC-NRIEASPLLVVSALHGTALGGGLEVALATHYRIAVPQAKVGLP 123

Query:   135 ELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL-LKVS 190
             E+ LG++PG   TQRLPR+ G+  A++M+   + + ++E  +LG+ID V   E   + +S
Sbjct:   124 EVHLGILPGAGGTQRLPRVAGVEAALDMITTGRHVRADEALRLGVIDRVAEGEPREIGLS 183

Query:   191 RLWAL-DIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIE 249
              L  L D  A R+P +  +     +   +    VL+  R Q            AC     
Sbjct:   184 YLRELLDEGAPRRP-VGEMPAPAPVDFDAIYAAVLRKGRGQLSPATAVRAVQAACE---A 239

Query:   250 EGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVA 309
             E       +G+ +E ++F EL+  D   GL+H FFA RA  K+P +   G+ PR +  + 
Sbjct:   240 ESFA----AGLKRERELFMELMNSDQREGLIHAFFADRAVGKLPELE--GVAPRPLAAIG 293

Query:   310 VIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANN- 368
             VIGGG MG+GIATA +L+ + V + E+  E        IE N+ G + RGKLT  + +N 
Sbjct:   294 VIGGGTMGAGIATAALLSGLSVTMLEMTPEAAEAAKGRIEGNLSGALKRGKLTAQQFDNL 353

Query:   369 ALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV 428
               K L   +DY    D D+VIEAV E + +K+++F++L+  C P  +LA+NTS +D+N +
Sbjct:   354 TTKALTLAIDYDALADADLVIEAVFEDMEVKKQVFTKLDAVCKPGAVLASNTSYLDINQI 413

Query:   429 GEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTG 488
                TS    ++G HFFSPAHVM LLE+V  ++T+  V                    C G
Sbjct:   414 AAVTSRPQDVLGLHFFSPAHVMKLLEVVIADQTAPDVAATGFALGKRLGKVSVRAGVCDG 473

Query:   489 FAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSK-EF 547
             F  NR    Y   A  ++  G   ++ID A+  FG  +GPF + DLAG  +  A  K + 
Sbjct:   474 FIGNRILSVYRTCADHMILDGASPYQIDEALEEFGFAMGPFAVADLAGLDIGWAVRKRKR 533

Query:   548 DKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPK-PDPSVLPIIEECRRLSNI 606
              +    R+  S   D L ++G  G+  GKG Y Y  G+K + P+P VLP+IE  R    I
Sbjct:   534 AEGLDPRARDSAYADKLCEAGHFGQKTGKGYYDYAAGAKARVPNPEVLPLIEAERAQQGI 593

Query:   607 MPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVF 666
              P     + ++ EIV   +  +VNE+ +V+ EGI  R  D+D   + G  FP YRGG + 
Sbjct:   594 TPR----AFSKDEIVRRYMAAMVNEAAKVVGEGIARRPLDVDVTLLYGYGFPRYRGGPLK 649

Query:   667 WADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKG 704
             WAD  G   +   +K+W+     F++P+  LE+   +G
Sbjct:   650 WADMQGLPELLADIKRWAAEDAYFWQPAPLLEQLVAEG 687

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=ISS

GO:0004300 "enoyl-CoA hydratase activity" evidence=ISS

GO:0009062 "fatty acid catabolic process" evidence=ISS

ZFIN|ZDB-GENE-040426-2581 ehhadh "enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase" [Danio rerio (taxid:7955)]

 Score = 879 (314.5 bits), Expect = 5.3e-88, P = 5.3e-88
 Identities = 238/720 (33%), Positives = 363/720 (50%)

Query:     9 EVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDIN 68
             E+    VA+ITL NPPVNAL+  +   +    E A S   V A+V+ G  GRF GG DI 
Sbjct:     5 ELVKRSVALITLTNPPVNALSSAVRHAISKTMERALSDPKVTAVVICGENGRFCGGADIR 64

Query:    69 VFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPK 128
              F     AG +   P V +   ++ IE  +KP+                + CH RIA  K
Sbjct:    65 EF-----AGPLRGPPLVPL---LDAIEAGEKPVVAAIEGVALGGGFELALVCHYRIAHYK 116

Query:   129 TQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 185
              +LGLPE+TLG++P   GTQRLPRL+G+  A+E++   + ++++E  KLG++D V T + 
Sbjct:   117 ARLGLPEVTLGILPAAGGTQRLPRLIGIPAALELITTGRHVSAQEALKLGMVDQV-TEQN 175

Query:   186 LLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAR--EVLKLARLQAKKTAPNMPQHQA 243
               +V+  +AL      KP   S  R   L +        + + A +Q +K A  +    A
Sbjct:   176 TCEVALEFALKAVG--KPL--SSRRLSMLTTPCPPGLDGIFEAATMQVQKKARGVMAPLA 231

Query:   244 CLDVIEEGIVHGGYS-GVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK--VPNVTDIG- 299
             C+  +    +   YS G+ +E ++   L     ++ L + FFAQR   K  +P+      
Sbjct:   232 CVQAVRAATLP--YSEGIKREGELMATLFSSGQAQALQYSFFAQRTAEKWTLPSGAQWNN 289

Query:   300 LKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRG 359
              KPR ++  AVIG G MG GI  +  L  + + +  V SE  L  ++T    V G++ R 
Sbjct:   290 SKPREIQSAAVIGLGTMGRGIVVS--LARVGISVIAVESEKKL--LETGRQMVIGMLERD 345

Query:   360 KLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATN 419
                +   + +L +LK  L   + KDVD+VIEAV E + LK++IF EL + C P  +L +N
Sbjct:   346 AKRRG-VSASLNLLKFSLSLQDLKDVDLVIEAVFEDMALKKQIFRELSRVCRPATLLCSN 404

Query:   420 TSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXX 479
             TS +D++ + + T     + G HFFSPAHVM LLE+V   R+S + I   M+        
Sbjct:   405 TSGLDVDALADVTDRPQLVAGMHFFSPAHVMKLLEVVCGPRSSKEAIATAMSLGKRMGKV 464

Query:   480 XXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGV 539
                  NC GF  NR   PY + A  L+  G    +ID A+  FG  +G F++ DLAG  V
Sbjct:   465 SVAVGNCPGFVGNRMLMPYLEQATFLLEEGATPQQIDKALEDFGFAMGVFRMSDLAGLDV 524

Query:   540 -------AAATSKEFDKAFPDRSFQS----PLVDLLLKSGRNGKANGKGLYTYEK--GSK 586
                    +  T  + D   P R  Q     P+ D++ + GR G+  G+G Y Y+K   + 
Sbjct:   525 GWRVRKESGLTGPDVDPKDPPRRRQGRKYCPIPDMVCQQGRFGQKTGRGWYMYDKPGDTN 584

Query:   587 PKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASD 646
              KPDP +  ++E  R    I P      +T++EI+E  LF + NE  R+L++ I  +  D
Sbjct:   585 AKPDPLIQNLLETYRSRYGIQPR----KITDQEIIERCLFALANEGFRILKDKIAGQPED 640

Query:   647 LDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNF--FKPSRFLEERATKG 704
             +D   + G  FP +RGG +F+A  VG   V   L+ +     +    +PS  L++   +G
Sbjct:   641 IDVIYLFGYGFPRHRGGPMFYASMVGLERVLERLEYYHHALPDVPHLEPSPLLKKLVARG 700

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

ZFIN|ZDB-GENE-031222-5 hadhaa "hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase, alpha subunit a" [Danio rerio (taxid:7955)]

 Score = 662 (238.1 bits), Expect = 2.4e-85, Sum P(2) = 2.4e-85
 Identities = 184/600 (30%), Positives = 292/600 (48%)

Query:   124 IAAPKTQLGLPELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVV-- 181
             +  P+  LGL    L    GTQRLP++VGL  A +MML  ++I +++  K+GL+  +V  
Sbjct:   167 LGTPEVMLGL----LPGAGGTQRLPKMVGLPAAFDMMLTGRNIRADKAKKMGLVHQLVDP 222

Query:   182 -----------TSEELLKVSRLWALDIAARRKPWIRS---LHRT-DKLGSLSEARE-VLK 225
                        T E L +V+  +A  +AA++    +    + +  D +  LS  R+ + K
Sbjct:   223 LGPGLKSPEERTIEYLEEVAVDFAKGLAAKKVTLEKKKGLMQKVQDFVMGLSLVRQQIYK 282

Query:   226 LARLQAKKTAPNM-PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFF 284
                 +  K +  + P     ++ I+ GI  G  +G L EA+ F +L M   SR L+ ++ 
Sbjct:   283 TVHGKVMKQSKGLYPAPLKIIECIQTGIEKGNAAGYLAEAQNFGQLAMSSESRALIGLYH 342

Query:   285 AQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG 344
              Q A  K       G   R V+ +A++G GLMG+GIA   I   +  +LK+   E L +G
Sbjct:   343 GQVACKK----NHFGKPEREVKNLAILGAGLMGAGIAQVTIDKGVATILKDTTLEGLARG 398

Query:   345 IKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFS 404
              + +   +     +  LT  + +  +  L G LDY  F+  DMVIEAV E + +K K+  
Sbjct:   399 EQQVYKGLNDKTKKKSLTTFERDGIMSKLSGQLDYHGFEKADMVIEAVFEDLAIKHKVLK 458

Query:   405 ELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQ 464
             E+E   PPHCI ATNTS + +  +   +   +++IG H+FSP   M LLEI+ T++TS  
Sbjct:   459 EVEAVIPPHCIFATNTSALPIKDIAAASKRPEKVIGMHYFSPVDKMQLLEIITTDKTSKD 518

Query:   465 VILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGL 524
                  +              +  GF   R   P    A  ++  GV   ++DS    FG 
Sbjct:   519 TTASAVAIGLKQGKLIVVVGDGPGFYTTRCLAPMLAEAVRILQEGVGPKKLDSLTTGFGF 578

Query:   525 PIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLL---LKSGRNGKANGKGLYTY 581
             P+G   L D  G  VAA  +++  KAF  R F    VD L   ++ G  G+ +GKG Y Y
Sbjct:   579 PVGLATLADEVGIDVAAHVAEDLGKAFGAR-FGGGNVDFLKTMVQKGFKGRKSGKGCYVY 637

Query:   582 EKGSKPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIV 641
               G+K K +  V    EE   L +      P   ++++I   ++   VNE+   L+EGI+
Sbjct:   638 --GAKSK-EKKVNSEAEEI--LKSFKLTAPPAVSSDEDIQYRLVSRFVNEAVLCLQEGIL 692

Query:   642 VRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERA 701
                   D  +V G+ FP   GG   + D+ GA+ +   +K++ ++YGN F P + L + A
Sbjct:   693 ADPIQGDIGAVFGLGFPPCLGGPFRFVDSYGADKLIQKMKRFEEVYGNQFSPCQLLLDHA 752

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=IEA

GO:0009617 "response to bacterium" evidence=IDA

UNIPROTKB|P77399 fadJ "FadJ monomer" [Escherichia coli K-12 (taxid:83333)]

 Score = 846 (302.9 bits), Expect = 1.7e-84, P = 1.7e-84
 Identities = 218/714 (30%), Positives = 352/714 (49%)

Query:     7 TMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSG 63
             T+ V  D +A+IT+  P   +N L     + ++   ++     +++ +V ++     F  
Sbjct:     8 TLNVRLDNIAVITIDVPGEKMNTLKAEFASQVRAIIKQLRENKELRGVVFVSAKPDNFIA 67

Query:    64 GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHAR 123
             G DIN+      A +   +     +L+   I      +                + CH R
Sbjct:    68 GADINMIGNCKTAQEAEALARQGQQLMAE-IHALPIQVIAAIHGACLGGGLELALACHGR 126

Query:   124 IAA--PKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 178
             +    PKT LGLPE+ LG++PG   TQRLPRL+G+S A+EM+L  K + +++  KLGL+D
Sbjct:   127 VCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVD 186

Query:   179 AVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKL--GSLSEAREVLKLARLQAKKTAP 236
              VV    LL+     A+++A + +P  R L   +++  G L  A     + +    KT  
Sbjct:   187 DVVPHSILLEA----AVELAKKERPSSRPLPVRERILAGPLGRALLFKMVGKKTEHKTQG 242

Query:   237 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVT 296
             N P  +  L+V+E G+  G  SG   EA+ F EL M   S+ L  +FFA     K P  +
Sbjct:   243 NYPATERILEVVETGLAQGTSSGYDAEARAFGELAMTPQSQALRSIFFASTDVKKDPG-S 301

Query:   297 DIGLKPRGVRKVAVIGGGLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGL 355
             D    P  +  V ++GGGLMG GIA        I V +K++N + +   +K     + G 
Sbjct:   302 DA--PPAPLNSVGILGGGLMGGGIAYVTACKAGIPVRIKDINPQGINHALKYSWDQLEGK 359

Query:   356 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCI 415
             V R  L   + +  L ++ G  DY  F   D++IEAV E++ LKQ++ +E+E+ C  H I
Sbjct:   360 VRRRHLKASERDKQLALISGTTDYRGFAHRDLIIEAVFENLELKQQMVAEVEQNCAAHTI 419

Query:   416 LATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXX 475
              A+NTS++ +  +    +  +++IG HFFSP   MPL+EI+    TSAQ I   +     
Sbjct:   420 FASNTSSLPIGDIAAHATRPEQVIGLHFFSPVEKMPLVEIIPHAGTSAQTIATTVKLAKK 479

Query:   476 XXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLA 535
                      +  GF VNR   PY   A  +++ G  V  ID+A+  FG P+GP QLLD  
Sbjct:   480 QGKTPIVVRDKAGFYVNRILAPYINEAIRMLTQGERVEHIDAALVKFGFPVGPIQLLDEV 539

Query:   536 GYGVAAATSKEFDKAFPDRSFQSP--LVDLLLKSGRNGKANGKGLYTY-EKGSKPKP--D 590
             G           + A+ +R F +P  +V  +L   R G+ NG+G Y Y +KG K K   D
Sbjct:   540 GIDTGTKIIPVLEAAYGER-FSAPANVVSSILNDDRKGRKNGRGFYLYGQKGRKSKKQVD 598

Query:   591 PSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDA 650
             P++ P+I            G+   ++  ++ E  +  ++NE+ R ++E ++    D D  
Sbjct:   599 PAIYPLI-------GTQGQGR---ISAPQVAERCVMLMLNEAVRCVDEQVIRSVRDGDIG 648

Query:   651 SVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKG 704
             +V G+ FP + GG   + D++GA  V   +++ +  YG+ F P   L E   +G
Sbjct:   649 AVFGIGFPPFLGGPFRYIDSLGAGEVVAIMQRLATQYGSRFTPCERLVEMGARG 702

GO:0051287 "NAD binding" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016042 "lipid catabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IEA

GO:0008692 "3-hydroxybutyryl-CoA epimerase activity" evidence=IEA

UNIPROTKB|P40939 HADHA "Trifunctional enzyme subunit alpha, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 653 (234.9 bits), Expect = 2.8e-84, Sum P(2) = 2.8e-84
 Identities = 174/580 (30%), Positives = 285/580 (49%)

Query:   143 GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVV-------------TSEELLKV 189
             GTQRLP++VG+  A++MML  +SI ++   K+GL+D +V             T E L +V
Sbjct:   184 GTQRLPKMVGVPAALDMMLTGRSIRADRAKKMGLVDQLVEPLGPGLKPPEERTIEYLEEV 243

Query:   190 SRLWALDIAARRKPWIRSLHRTDKLGSLSEA-----REVLKLARLQAKKTAPNM-PQHQA 243
             +  +A  +A ++    R     +KL + +       ++V K    + +K    + P    
Sbjct:   244 AITFAKGLADKKISPKRDKGLVEKLTAYAMTIPFVRQQVYKKVEEKVRKQTKGLYPAPLK 303

Query:   244 CLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPR 303
              +DV++ GI  G  +G L E++ F ELVM   S+ L+ ++  Q    K       G   +
Sbjct:   304 IIDVVKTGIEQGSDAGYLCESQKFGELVMTKESKALMGLYHGQVLCKK----NKFGAPQK 359

Query:   304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQ 363
              V+ +A++G GLMG+GIA   +   +  +LK+     L +G + +   +   V +  LT 
Sbjct:   360 DVKHLAILGAGLMGAGIAQVSVDKGLKTILKDATLTALDRGQQQVFKGLNDKVKKKALTS 419

Query:   364 DKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI 423
              + ++    L G LDY  F+  DMVIEAV E + LK ++  E+E   P HCI A+NTS +
Sbjct:   420 FERDSIFSNLTGQLDYQGFEKADMVIEAVFEDLSLKHRVLKEVEAVIPDHCIFASNTSAL 479

Query:   424 DLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXX 483
              ++ +   +   +++IG H+FSP   M LLEI+ TE+TS       +             
Sbjct:   480 PISEIAAVSKRPEKVIGMHYFSPVDKMQLLEIITTEKTSKDTSASAVAVGLKQGKVIIVV 539

Query:   484 XNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAAT 543
              +  GF   R   P       ++  GVD  ++DS   SFG P+G   L+D  G  VA   
Sbjct:   540 KDGPGFYTTRCLAPMMSEVIRILQEGVDPKKLDSLTTSFGFPVGAATLVDEVGVDVAKHV 599

Query:   544 SKEFDKAFPDR-SFQSP-LVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEECR 601
             +++  K F +R    +P L+  ++  G  G+ +GKG Y Y++G K K   S +  I    
Sbjct:   600 AEDLGKVFGERFGGGNPELLTQMVSKGFLGRKSGKGFYIYQEGVKRKDLNSDMDSILASL 659

Query:   602 RLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYR 661
             +L    P    +S ++++I   ++   VNE+   L+EGI+   ++ D  +V G+ FP   
Sbjct:   660 KL----PPKSEVS-SDEDIQFRLVTRFVNEAVMCLQEGILATPAEGDIGAVFGLGFPPCL 714

Query:   662 GGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERA 701
             GG   + D  GA  +   LKK+   YG  F P + L + A
Sbjct:   715 GGPFRFVDLYGAQKIVDRLKKYEAAYGKQFTPCQLLADHA 754

GO:0004300 "enoyl-CoA hydratase activity" evidence=IEA

GO:0016509 "long-chain-3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=IEA

GO:0016508 "long-chain-enoyl-CoA hydratase activity" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0032868 "response to insulin stimulus" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=IEA;TAS

GO:0003985 "acetyl-CoA C-acetyltransferase activity" evidence=TAS

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0006644 "phospholipid metabolic process" evidence=TAS

GO:0035965 "cardiolipin acyl-chain remodeling" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0046474 "glycerophospholipid biosynthetic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0042645 "mitochondrial nucleoid" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B1X9L4	FADJ_ECODH	1, ., 1, ., 1, ., 3, 5	0.3197	0.9431	0.9523	yes	no
B2TWV4	FADJ_SHIB3	1, ., 1, ., 1, ., 3, 5	0.3244	0.9403	0.9495	yes	no
Q32DJ4	FADJ_SHIDS	1, ., 1, ., 1, ., 3, 5	0.3230	0.9403	0.9495	yes	no
A4WCW6	FADJ_ENT38	1, ., 1, ., 1, ., 3, 5	0.3225	0.9389	0.9468	yes	no
B5RCL3	FADJ_SALG2	1, ., 1, ., 1, ., 3, 5	0.3220	0.9306	0.9384	yes	no
B5XVW2	FADJ_KLEP3	1, ., 1, ., 1, ., 3, 5	0.3300	0.9389	0.9481	yes	no
Q3YZM2	FADJ_SHISS	1, ., 1, ., 1, ., 3, 5	0.3230	0.9403	0.9495	yes	no
Q9DBM2	ECHP_MOUSE	1, ., 1, ., 1, ., 3, 5	0.3267	0.9306	0.9345	yes	no
O49809	MFPA_BRANA	1, ., 1, ., 1, ., 3, 5	0.5888	0.9889	0.9834	N/A	no
B5R3R9	FADJ_SALEP	1, ., 1, ., 1, ., 3, 5	0.3220	0.9306	0.9384	yes	no
B5EZR9	FADJ_SALA4	1, ., 1, ., 1, ., 3, 5	0.3220	0.9306	0.9384	yes	no
B7MY16	FADJ_ECO81	1, ., 1, ., 1, ., 3, 5	0.3230	0.9403	0.9495	yes	no
Q39659	MFPA_CUCSA	1, ., 1, ., 1, ., 3, 5	0.5918	0.9833	0.9779	N/A	no
Q83QQ0	FADJ_SHIFL	1, ., 1, ., 1, ., 3, 5	0.3230	0.9403	0.9495	yes	no
Q1R972	FADJ_ECOUT	1, ., 1, ., 1, ., 3, 5	0.3230	0.9403	0.9495	yes	no
B5BBA1	FADJ_SALPK	1, ., 1, ., 1, ., 3, 5	0.3220	0.9306	0.9384	yes	no
A1ADI8	FADJ_ECOK1	1, ., 1, ., 1, ., 3, 5	0.3230	0.9403	0.9495	yes	no
Q31YB7	FADJ_SHIBS	1, ., 1, ., 1, ., 3, 5	0.3216	0.9403	0.9495	yes	no
Q9ZPI6	AIM1_ARATH	1, ., 1, ., 1, ., 3, 5	0.7440	0.9875	0.9875	yes	no
Q8FFG4	FADJ_ECOL6	1, ., 1, ., 1, ., 3, 5	0.3272	0.9403	0.9495	yes	no
B5FPN1	FADJ_SALDC	1, ., 1, ., 1, ., 3, 5	0.3220	0.9306	0.9384	yes	no
B7M6M2	FADJ_ECO8A	1, ., 1, ., 1, ., 3, 5	0.3216	0.9403	0.9495	yes	no
A8A2L0	FADJ_ECOHS	1, ., 1, ., 1, ., 3, 5	0.3296	0.9389	0.9481	yes	no
Q6NYL3	ECHP_DANRE	1, ., 1, ., 1, ., 3, 5	0.3601	0.9348	0.9387	yes	no
Q5PCX6	FADJ_SALPA	1, ., 1, ., 1, ., 3, 5	0.3220	0.9306	0.9384	yes	no
P07896	ECHP_RAT	1, ., 1, ., 1, ., 3, 5	0.3375	0.9264	0.9252	yes	no
B6I6Q4	FADJ_ECOSE	1, ., 1, ., 1, ., 3, 5	0.3244	0.9403	0.9495	yes	no
B5YXY4	FADJ_ECO5E	1, ., 1, ., 1, ., 3, 5	0.3244	0.9403	0.9495	yes	no
C4ZVN2	FADJ_ECOBW	1, ., 1, ., 1, ., 3, 5	0.3197	0.9431	0.9523	yes	no
B1LME7	FADJ_ECOSM	1, ., 1, ., 1, ., 3, 5	0.3198	0.9459	0.9551	yes	no
B7NP24	FADJ_ECO7I	1, ., 1, ., 1, ., 3, 5	0.3216	0.9403	0.9495	yes	no
Q5R5M8	ECHP_PONAB	1, ., 1, ., 1, ., 3, 5	0.3370	0.9306	0.9280	yes	no
B7UFZ8	FADJ_ECO27	1, ., 1, ., 1, ., 3, 5	0.3230	0.9403	0.9495	yes	no
B7LLD0	FADJ_ESCF3	1, ., 1, ., 1, ., 3, 5	0.3361	0.9417	0.9509	yes	no
B4TCA8	FADJ_SALHS	1, ., 1, ., 1, ., 3, 5	0.3220	0.9306	0.9384	yes	no
Q0T2E6	FADJ_SHIF8	1, ., 1, ., 1, ., 3, 5	0.3230	0.9403	0.9495	yes	no
B1IXA5	FADJ_ECOLC	1, ., 1, ., 1, ., 3, 5	0.3216	0.9403	0.9495	yes	no
B4SZR0	FADJ_SALNS	1, ., 1, ., 1, ., 3, 5	0.3233	0.9223	0.9300	yes	no
B7N5V2	FADJ_ECOLU	1, ., 1, ., 1, ., 3, 5	0.3211	0.9431	0.9523	yes	no
Q08426	ECHP_HUMAN	1, ., 1, ., 1, ., 3, 5	0.3356	0.9306	0.9280	yes	no
Q0TFA6	FADJ_ECOL5	1, ., 1, ., 1, ., 3, 5	0.3239	0.9320	0.9411	yes	no
Q8W1L6	MFP_ORYSJ	1, ., 1, ., 1, ., 3, 5	0.6957	0.9972	0.9903	yes	no
P55100	ECHP_CAVPO	1, ., 1, ., 1, ., 3, 5	0.3351	0.9292	0.9228	yes	no
B7MGV7	FADJ_ECO45	1, ., 1, ., 1, ., 3, 5	0.3230	0.9403	0.9495	yes	no
B7LBJ5	FADJ_ECO55	1, ., 1, ., 1, ., 3, 5	0.3202	0.9403	0.9495	yes	no
A6TC19	FADJ_KLEP7	1, ., 1, ., 1, ., 3, 5	0.3277	0.9403	0.9495	yes	no
A7ZPF8	FADJ_ECO24	1, ., 1, ., 1, ., 3, 5	0.3244	0.9403	0.9495	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.983
3rd Layer	5.1.2.3	0.979
3rd Layer	1.1.1.35	0.979
4th Layer	4.2.1.17	0.979
3rd Layer	5.3.3.8	0.979
3rd Layer	4.2.1	0.983
3rd Layer	5.1.2	0.983
3rd Layer	5.3.3	0.983

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_XVIII0682	SubName- Full=Putative uncharacterized protein; (727 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_Genewise1_v1.C_LG_XVI3692	acyl-CoA oxidase (EC-1.3.3.6) (437 aa)						•	•		0.907
	estExt_Genewise1_v1.C_LG_VI1706	acyl-CoA oxidase (EC-1.3.3.6) (436 aa)						•	•		0.906
	estExt_fgenesh4_pm.C_290034	acyl-CoA oxidase (EC-1.3.3.6) (664 aa)						•	•		0.905
	grail3.0096010101	acyl-CoA oxidase (EC-1.3.3.6) (639 aa)						•	•		0.903
	fgenesh4_pg.C_LG_XIX000851	acyl-CoA oxidase (EC-1.3.3.6) (680 aa)						•	•		0.902
	estExt_fgenesh4_pm.C_LG_VII0199	acyl-CoA oxidase (EC-1.3.3.6) (689 aa)						•	•		0.901
	estExt_fgenesh4_pm.C_LG_V0077	acyl-CoA oxidase (EC-1.3.3.6) (691 aa)						•	•		0.901
	fgenesh4_pg.C_scaffold_3547000001	annotation not avaliable (326 aa)						•			0.899
	eugene3.07970004	Predicted protein (395 aa)	•					•	•		0.482
	fgenesh4_pg.C_scaffold_17829000001	Predicted protein (327 aa)	•					•	•		0.467

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	721
PRK11154	708	PRK11154, fadJ, multifunctional fatty acid oxidati	1e-159
TIGR02440	699	TIGR02440, FadJ, fatty oxidation complex, alpha su	1e-130
PRK11730	715	PRK11730, fadB, multifunctional fatty acid oxidati	1e-121
TIGR02441	737	TIGR02441, fa_ox_alpha_mit, fatty acid oxidation c	1e-120
TIGR02437	714	TIGR02437, FadB, fatty oxidation complex, alpha su	1e-117
COG1250	307	COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Li	2e-85
pfam02737	180	pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenas	9e-64
PRK05808	282	PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydroge	2e-59
PRK07658	257	PRK07658, PRK07658, enoyl-CoA hydratase; Provision	4e-59
cd06558	195	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme	5e-56
PLN02545	295	PLN02545, PLN02545, 3-hydroxybutyryl-CoA dehydroge	7e-55
TIGR02279	503	TIGR02279, PaaC-3OHAcCoADH, 3-hydroxyacyl-CoA dehy	9e-53
PRK08268	507	PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogena	2e-49
COG1024	257	COG1024, CaiD, Enoyl-CoA hydratase/carnithine race	6e-48
pfam00378	245	pfam00378, ECH, Enoyl-CoA hydratase/isomerase fami	3e-47
PRK09260	288	PRK09260, PRK09260, 3-hydroxybutyryl-CoA dehydroge	2e-46
PRK07819	286	PRK07819, PRK07819, 3-hydroxybutyryl-CoA dehydroge	2e-45
PRK06035	291	PRK06035, PRK06035, 3-hydroxyacyl-CoA dehydrogenas	2e-43
PRK06688	259	PRK06688, PRK06688, enoyl-CoA hydratase; Provision	6e-42
PRK06130	311	PRK06130, PRK06130, 3-hydroxybutyryl-CoA dehydroge	1e-40
PRK07530	292	PRK07530, PRK07530, 3-hydroxybutyryl-CoA dehydroge	3e-40
PRK07657	260	PRK07657, PRK07657, enoyl-CoA hydratase; Provision	2e-36
PRK08138	261	PRK08138, PRK08138, enoyl-CoA hydratase; Provision	1e-35
PRK05809	260	PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydrata	3e-34
PRK06495	257	PRK06495, PRK06495, enoyl-CoA hydratase; Provision	4e-32
PRK08293	287	PRK08293, PRK08293, 3-hydroxybutyryl-CoA dehydroge	1e-31
PRK06494	259	PRK06494, PRK06494, enoyl-CoA hydratase; Provision	4e-31
PRK05862	257	PRK05862, PRK05862, enoyl-CoA hydratase; Provision	7e-31
PRK09674	255	PRK09674, PRK09674, enoyl-CoA hydratase-isomerase;	6e-30
PRK05980	260	PRK05980, PRK05980, enoyl-CoA hydratase; Provision	9e-30
PRK09076	258	PRK09076, PRK09076, enoyl-CoA hydratase; Provision	3e-28
PRK06127	269	PRK06127, PRK06127, enoyl-CoA hydratase; Provision	5e-28
PRK08258	277	PRK08258, PRK08258, enoyl-CoA hydratase; Provision	7e-27
PRK06144	262	PRK06144, PRK06144, enoyl-CoA hydratase; Provision	1e-25
PRK06190	258	PRK06190, PRK06190, enoyl-CoA hydratase; Provision	5e-25
PRK05995	262	PRK05995, PRK05995, enoyl-CoA hydratase; Provision	3e-24
PRK08150	255	PRK08150, PRK08150, enoyl-CoA hydratase; Provision	9e-24
PRK08260	296	PRK08260, PRK08260, enoyl-CoA hydratase; Provision	2e-23
PLN02888	265	PLN02888, PLN02888, enoyl-CoA hydratase	2e-23
PRK06210	272	PRK06210, PRK06210, enoyl-CoA hydratase; Provision	3e-23
PRK08252	254	PRK08252, PRK08252, enoyl-CoA hydratase; Provision	4e-23
PRK09245	266	PRK09245, PRK09245, enoyl-CoA hydratase; Provision	1e-22
PRK06142	272	PRK06142, PRK06142, enoyl-CoA hydratase; Provision	2e-22
TIGR01929	259	TIGR01929, menB, naphthoate synthase (dihydroxynap	2e-22
PRK05864	276	PRK05864, PRK05864, enoyl-CoA hydratase; Provision	2e-22
PRK03580	261	PRK03580, PRK03580, carnitinyl-CoA dehydratase; Pr	3e-22
PRK06143	256	PRK06143, PRK06143, enoyl-CoA hydratase; Provision	4e-22
PLN02600	251	PLN02600, PLN02600, enoyl-CoA hydratase	8e-22
PRK08259	254	PRK08259, PRK08259, enoyl-CoA hydratase; Provision	1e-21
pfam00725	97	pfam00725, 3HCDH, 3-hydroxyacyl-CoA dehydrogenase,	1e-21
PRK05981	266	PRK05981, PRK05981, enoyl-CoA hydratase; Provision	3e-21
PRK07938	249	PRK07938, PRK07938, enoyl-CoA hydratase; Provision	2e-20
PRK08269	314	PRK08269, PRK08269, 3-hydroxybutyryl-CoA dehydroge	4e-20
PRK05869	222	PRK05869, PRK05869, enoyl-CoA hydratase; Validated	1e-19
COG0447	282	COG0447, MenB, Dihydroxynaphthoic acid synthase [C	1e-19
PRK07799	263	PRK07799, PRK07799, enoyl-CoA hydratase; Provision	1e-19
PRK07509	262	PRK07509, PRK07509, enoyl-CoA hydratase; Provision	2e-19
PRK07511	260	PRK07511, PRK07511, enoyl-CoA hydratase; Provision	4e-18
PRK05870	249	PRK05870, PRK05870, enoyl-CoA hydratase; Provision	6e-18
TIGR02280	256	TIGR02280, PaaB1, phenylacetate degradation probab	7e-18
PLN02664	275	PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-d	9e-18
PRK08290	288	PRK08290, PRK08290, enoyl-CoA hydratase; Provision	4e-17
PRK07110	249	PRK07110, PRK07110, polyketide biosynthesis enoyl-	1e-16
PRK07396	273	PRK07396, PRK07396, dihydroxynaphthoic acid synthe	2e-16
PLN02921	327	PLN02921, PLN02921, naphthoate synthase	2e-16
PRK07531	495	PRK07531, PRK07531, bifunctional 3-hydroxyacyl-CoA	5e-16
TIGR03210	256	TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hyd	7e-16
PRK07327	268	PRK07327, PRK07327, enoyl-CoA hydratase; Provision	8e-16
PRK06129	308	PRK06129, PRK06129, 3-hydroxyacyl-CoA dehydrogenas	2e-15
TIGR03189	251	TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecar	4e-15
PRK07468	262	PRK07468, PRK07468, enoyl-CoA hydratase; Provision	4e-15
PRK06213	229	PRK06213, PRK06213, enoyl-CoA hydratase; Provision	5e-15
PRK06023	251	PRK06023, PRK06023, enoyl-CoA hydratase; Provision	6e-15
PRK07854	243	PRK07854, PRK07854, enoyl-CoA hydratase; Provision	6e-15
PRK08140	262	PRK08140, PRK08140, enoyl-CoA hydratase; Provision	7e-15
PRK08139	266	PRK08139, PRK08139, enoyl-CoA hydratase; Validated	2e-14
PRK07659	260	PRK07659, PRK07659, enoyl-CoA hydratase; Provision	8e-14
PRK08272	302	PRK08272, PRK08272, enoyl-CoA hydratase; Provision	8e-14
PRK06563	255	PRK06563, PRK06563, enoyl-CoA hydratase; Provision	1e-13
PRK11423	261	PRK11423, PRK11423, methylmalonyl-CoA decarboxylas	2e-13
PRK07260	255	PRK07260, PRK07260, enoyl-CoA hydratase; Provision	8e-13
PRK07827	260	PRK07827, PRK07827, enoyl-CoA hydratase; Provision	1e-12
PRK07112	255	PRK07112, PRK07112, polyketide biosynthesis enoyl-	3e-12
PRK09120	275	PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydrata	1e-11
PRK08788	287	PRK08788, PRK08788, enoyl-CoA hydratase; Validated	2e-11
PRK06072	248	PRK06072, PRK06072, enoyl-CoA hydratase; Provision	3e-11
PRK05617	342	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrol	5e-11
PRK08321	302	PRK08321, PRK08321, naphthoate synthase; Validated	2e-09
PRK07066	321	PRK07066, PRK07066, 3-hydroxybutyryl-CoA dehydroge	3e-09
PLN02874	379	PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrol	2e-08
PLN03214	278	PLN03214, PLN03214, probable enoyl-CoA hydratase/i	4e-08
TIGR03200	360	TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-car	3e-07
PLN02988	381	PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrol	1e-06
PLN02851	407	PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrol	3e-06
PLN02267	239	PLN02267, PLN02267, enoyl-CoA hydratase/isomerase	3e-06
PRK12478	298	PRK12478, PRK12478, enoyl-CoA hydratase; Provision	5e-06
PRK05674	265	PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydr	2e-05
pfam00725	97	pfam00725, 3HCDH, 3-hydroxyacyl-CoA dehydrogenase,	2e-04
TIGR03222	546	TIGR03222, benzo_boxC, benzoyl-CoA-dihydrodiol lya	7e-04
PRK08184	550	PRK08184, PRK08184, benzoyl-CoA-dihydrodiol lyase;	0.001
PRK08268	507	PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogena	0.004

>gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score =  476 bits (1228), Expect = e-159
 Identities = 252/725 (34%), Positives = 372/725 (51%), Gaps = 40/725 (5%)

Query: 1   MAAPRV-TMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIVLT-G 56
           M      T+ V  D +A+IT+  P   +N L       ++   ++     ++K +V   G
Sbjct: 1   MEMASAFTLNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISG 60

Query: 57  NGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLEL 116
               F  G DIN+      A +   +     + +   IE    P+VAA+ G  LGGGLEL
Sbjct: 61  KPDNFIAGADINMLAACKTAQEAEALARQGQQ-LFAEIEALPIPVVAAIHGACLGGGLEL 119

Query: 117 AMGCHARIAA--PKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEG 171
           A+ CH R+    PKT LGLPE+ LG++PG   TQRLPRL+G+S A++M+L  K + +++ 
Sbjct: 120 ALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQA 179

Query: 172 WKLGLIDAVVTSEELLKVSRLWALD--IAARRKPWIRSLHRTDKLGSLSEAREVL-KLAR 228
            KLGL+D VV    LL+V+   A     A R  P    L   + LG     R +L K AR
Sbjct: 180 LKLGLVDDVVPHSILLEVAVELAKKGKPARRPLPVRERLLEGNPLG-----RALLFKQAR 234

Query: 229 LQA-KKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQR 287
            +   KT  N P  +  LDV+  G+  G  SG   EA+ F EL M   S  L  +FFA  
Sbjct: 235 KKTLAKTQGNYPAPERILDVVRTGLEKGMSSGYEAEARAFGELAMTPESAALRSIFFATT 294

Query: 288 ATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIK 346
              K         KPR V KV V+GGGLMG GIA        + V +K++N + +   +K
Sbjct: 295 EMKKDTGS---DAKPRPVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALK 351

Query: 347 TIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSEL 406
                +   V R  L   + +  + ++ G  DY  FK  D+VIEAV E + LKQ++ +E+
Sbjct: 352 YSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRGFKHADVVIEAVFEDLALKQQMVAEV 411

Query: 407 EKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVI 466
           E+ C PH I A+NTS++ +  +    +  +++IG H+FSP   MPL+E++   +TSA+ I
Sbjct: 412 EQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETI 471

Query: 467 LDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPY-SQSARLLVSLGVDVFRIDSAIRSFGLP 525
              + + K   K P+VV +  GF VNR   PY +++ARLL+  G  +  ID+A+  FG P
Sbjct: 472 ATTVALAKKQGKTPIVVRDGAGFYVNRILAPYINEAARLLLE-GEPIEHIDAALVKFGFP 530

Query: 526 IGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSP-LVDLLLKSGRNGKANGKGLYTYEKG 584
           +GP  LLD  G  V        + A  +R F +P   D LL   R G+ NG+G Y Y + 
Sbjct: 531 VGPITLLDEVGIDVGTKIIPILEAALGER-FSAPAAFDKLLNDDRKGRKNGRGFYLYGQK 589

Query: 585 SKPK---PDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIV 641
            K      D SV P++        I P  +   ++  EI E  +  ++NE+ R L+EGI+
Sbjct: 590 GKKSKKQVDESVYPLL-------GITPQSR---LSANEIAERCVMLMLNEAVRCLDEGII 639

Query: 642 VRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERA 701
             A D D  +V G+ FP + GG   + D++GA  V   L++ +  YG+ F P   L E A
Sbjct: 640 RSARDGDIGAVFGIGFPPFLGGPFRYMDSLGAGEVVAILERLAAQYGDRFTPCERLVEMA 699

Query: 702 TKGIP 706
            +G  
Sbjct: 700 ERGES 704

Length = 708

>gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ

 Score =  402 bits (1034), Expect = e-130
 Identities = 242/715 (33%), Positives = 364/715 (50%), Gaps = 39/715 (5%)

Query: 7   TMEVGNDGVAIITL--INPPVNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNGGRFSG 63
           T+ V  DG+AI+T+      +N L       + +   +      ++ +VL +G    F  
Sbjct: 3   TLTVREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIA 62

Query: 64  GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHAR 123
           G DI++      AG+   +      L    +E    P+VAA+ G  LGGGLELA+ CH+R
Sbjct: 63  GADISMLAACQTAGEAKALAQQGQVLF-AELEALPIPVVAAIHGACLGGGLELALACHSR 121

Query: 124 IAA--PKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 178
           + +   KT LGLPE+ LG++PG   TQRLPRL+G+S A++M+L  K + +++  KLGL+D
Sbjct: 122 VCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVD 181

Query: 179 AVVTSEELLKVSRLWALD--IAARRKPWIRSLHRTDKLGSLSEAREVL--KLARLQAKKT 234
            VV    LL  +   AL      +       L     LG     R +L  + A+  AKKT
Sbjct: 182 DVVPQSILLDTAVEMALKGKPIRKPLSLQERLLEGTPLG-----RALLFDQAAKKTAKKT 236

Query: 235 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPN 294
             N P  +  LDV+ +G+  G   G+  EA+ F ELVM   S  L  +FFA     K   
Sbjct: 237 QGNYPAAERILDVVRQGLAQGMQKGLDAEARAFGELVMTPESAALRSIFFATTEMKKETG 296

Query: 295 VTDIGLKPRGVRKVAVIGGGLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVR 353
                  P  ++KV ++GGGLMG GIA+       I V +K++N + +   +K     + 
Sbjct: 297 SDAT---PAKIKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLD 353

Query: 354 GLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPH 413
             V R  +T  + +N + ++ G  DY  FKDVD+VIEAV E + LK ++  ++E+ C  H
Sbjct: 354 KGVKRRHMTPAERDNQMALITGTTDYRGFKDVDIVIEAVFEDLALKHQMVKDIEQECAAH 413

Query: 414 CILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVG 473
            I A+NTS++ +  +    S  + +IG H+FSP   MPL+E++    TS Q I   + + 
Sbjct: 414 TIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATTVALA 473

Query: 474 KIIKKVPVVVGNCTGFAVNRAFFPY-SQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLL 532
           K   K P+VV +  GF VNR   PY +++ARLL+  G  V  ID A+  FG P+GP  LL
Sbjct: 474 KKQGKTPIVVADKAGFYVNRILAPYMNEAARLLLE-GEPVEHIDKALVKFGFPVGPITLL 532

Query: 533 DLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKP-DP 591
           D  G  V A  S   +    +R     + D LL   R G+ NGKG Y Y   +K K  D 
Sbjct: 533 DEVGIDVGAKISPILEAELGERFKAPAVFDKLLSDDRKGRKNGKGFYLYGAATKKKAVDE 592

Query: 592 SVLPIIEECRRLSNIMPGGKPIS--VTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDD 649
           SV  ++        I PG    +  V E+ ++ M+     NE+ R L+EG++    D D 
Sbjct: 593 SVYGLL-------GIKPGVDKEASAVAERCVMLML-----NEAVRCLDEGVIRSPRDGDI 640

Query: 650 ASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKG 704
            ++ G+ FP + GG   + D +GA+ V   L++    YG+ F P + L   A + 
Sbjct: 641 GAIFGIGFPPFLGGPFRYIDTLGADNVVKILERLQTQYGDRFTPCQRLVAMAAEK 695

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog model [Fatty acid and phospholipid metabolism, Degradation]. Length = 699

>gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score =  378 bits (972), Expect = e-121
 Identities = 236/719 (32%), Positives = 367/719 (51%), Gaps = 50/719 (6%)

Query: 13  DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           DG+A +    P  VN L    +A L +  +   ++ D+K ++LT     F  G DI  F 
Sbjct: 15  DGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFL 74

Query: 72  KVHGAGDVSLMPDVS-VELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
            +  A +  L   +     + N +ED   P VAA+ G ALGGG E  +    R+A+P  +
Sbjct: 75  SLFAAPEEELSQWLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDAR 134

Query: 131 LGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 187
           +GLPE  LG++PG   T RLPRL+G   A+E +   K + +E+  K+G +DAVV  E+L 
Sbjct: 135 IGLPETKLGIMPGFGGTVRLPRLIGADNALEWIAAGKDVRAEDALKVGAVDAVVAPEKLQ 194

Query: 188 K--VSRLWA-----LDIAARRKPWIRSLHRTDKLGSLS----EAREVLKLAR-LQAKKTA 235
           +  ++ L       LD  ARR+P         KL  L     EA      A+ + A+K  
Sbjct: 195 EAALALLKQAIAGKLDWKARRQP---------KLEPLKLSKIEAMMSFTTAKGMVAQKAG 245

Query: 236 PNMPQHQACLDVIEEGIVHGGYSGVLK-EAKVFKELVMLDTSRGLVHVFFAQRATSKVPN 294
            + P     +  IE     G     L+ EAK F +L   + +R LV +F   +       
Sbjct: 246 KHYPAPMTAVKTIEAAAGLG-RDEALELEAKGFVKLAKTNVARALVGIFLNDQYVKGKAK 304

Query: 295 VTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRG 354
                 KP  V++ AV+G G+MG GIA       + V++K++N + L  G+      +  
Sbjct: 305 KLAKDAKP--VKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNK 362

Query: 355 LVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHC 414
            V RGK+   K    L  ++  LDY+ F+ VD+V+EAV+E+  +K  + +E+E+      
Sbjct: 363 QVERGKIDGAKMAGVLSSIRPTLDYAGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDT 422

Query: 415 ILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGK 474
           ILA+NTSTI ++++ +     +   G HFF+P H MPL+E++R E+TS + I  ++    
Sbjct: 423 ILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVVAYAS 482

Query: 475 IIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLD 533
            + K P+VV +C GF VNR  FPY      L+  G D  +ID  + + FG P+GP  LLD
Sbjct: 483 KMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGADFRQIDKVMEKQFGWPMGPAYLLD 542

Query: 534 LAGYGVAAATSKEFDKAFPDR---SFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKP- 589
           + G   A        + FPDR    ++   +D+L ++ R G+ NGKG Y YE+  K KP 
Sbjct: 543 VVGIDTAHHAQAVMAEGFPDRMKKDYRDA-IDVLFEAKRFGQKNGKGFYRYEEDKKGKPK 601

Query: 590 ---DPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASD 646
              DP+V  ++        ++   +    +++EI+  ++ P++NE  R LEEGIV   ++
Sbjct: 602 KEVDPAVYELLAP------VVQPKR--EFSDEEIIARMMIPMINEVVRCLEEGIVASPAE 653

Query: 647 LDDASVLGMSFPSYRGGIVFWADAVG-ANYVYTSLKKWSQLYGNFFKPSRFLEERATKG 704
            D A V G+ FP +RGG   + D +G ANYV  +  K++ L G  ++    L E A  G
Sbjct: 654 ADMALVYGLGFPPFRGGAFRYLDTLGVANYVALA-DKYAHL-GPLYQVPEGLREMAANG 710

Length = 715

>gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha subunit, mitochondrial

 Score =  375 bits (964), Expect = e-120
 Identities = 243/731 (33%), Positives = 362/731 (49%), Gaps = 41/731 (5%)

Query: 1   MAAPRVTMEVGND-GVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNG 58
           MA      EV  D  V  I   N  VN L+  + A  K+   E  + + +K+ VL +G  
Sbjct: 10  MARTHRHYEVKGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKP 69

Query: 59  GRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAM 118
           G F  G DI +      A +V+ +     E+    IE  +KPIVAA+ G  LGGGLELA+
Sbjct: 70  GSFVAGADIQMIAACKTAQEVTQLSQEGQEMFER-IEKSQKPIVAAISGSCLGGGLELAL 128

Query: 119 GCHARIAAP--KTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWK 173
            CH RIA    KT LGLPE+ LG++PG   TQRLP+L G+  A++MML  K I ++   K
Sbjct: 129 ACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGVPAALDMMLTGKKIRADRAKK 188

Query: 174 LGLIDAVV-------------TSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEA 220
           +G++D +V             T E L +V+  +A  +A  +    R      K+      
Sbjct: 189 MGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANGKLSINRDKGLVHKITQYVMT 248

Query: 221 -----REVLKLARLQAKK-TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLD 274
                ++V K A  +  K T    P     LDV+  G   G  +G   E+K F EL M  
Sbjct: 249 NPFVRQQVYKTAEDKVMKQTKGLYPAPLKILDVVRTGYDQGPDAGYEAESKAFGELSMTF 308

Query: 275 TSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLK 334
            S+ L+ +F  Q    K       G   R V+ +AV+G GLMG+GIA   +   +  VLK
Sbjct: 309 ESKALIGLFHGQTDCKK----NKFGKPQRPVKTLAVLGAGLMGAGIAQVSVDKGLKTVLK 364

Query: 335 EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIE 394
           +     L +G + +   +   V R K+T  + ++ L  L   LDYS FK+ DMVIEAV E
Sbjct: 365 DATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYSGFKNADMVIEAVFE 424

Query: 395 SVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE 454
            + LK K+  E+E   PPHCI+A+NTS + +  +   +S  +++IG H+FSP   M LLE
Sbjct: 425 DLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLLE 484

Query: 455 IVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFR 514
           I+  + TS   +   + VG    KV +VV +  GF   R   P       L+  GVD  +
Sbjct: 485 IITHDGTSKDTLASAVAVGLKQGKVVIVVKDGPGFYTTRCLGPMLAEVIRLLQEGVDPKK 544

Query: 515 IDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR-SFQSP-LVDLLLKSGRNGK 572
           +D     FG P+G   L D  G  VA   +++  KAF +R    S  L+  L+K+G  G+
Sbjct: 545 LDKLTTKFGFPVGAATLADEVGVDVAEHVAEDLGKAFGERFGGGSAELLSELVKAGFLGR 604

Query: 573 ANGKGLYTYEKGSKPKPD--PSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVN 630
            +GKG++ Y++G K           I+ + +     +P    +S  E   + ++    VN
Sbjct: 605 KSGKGIFIYQEGKKGSKKVNSDADEILAQYK-----LPPKAEVSSPEDIQIRLVS-RFVN 658

Query: 631 ESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNF 690
           E+   LEEGI+   S+ D  +V G+ FP + GG   + D  GA+ +   ++K++  YG  
Sbjct: 659 EAVLCLEEGILASPSEGDIGAVFGLGFPPFLGGPFRFVDLYGADKLVDKMEKYAAAYGVQ 718

Query: 691 FKPSRFLEERA 701
           F P + L + A
Sbjct: 719 FTPCQLLLDHA 729

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human , pig , and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). Length = 737

>gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB

 Score =  369 bits (948), Expect = e-117
 Identities = 227/725 (31%), Positives = 357/725 (49%), Gaps = 38/725 (5%)

Query: 3   APRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF 61
              + +    DG+A +    P  VN      +A L    +   ++  +K ++LT     F
Sbjct: 5   GKTIQVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAF 64

Query: 62  SGGFDINVFQKVHGAGDVSLMPDVS-VELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
             G DI  F  +    D  L+  +     + N +ED   P VAA+ G+ALGGG E  +  
Sbjct: 65  IVGADITEFLGLFALPDAELIQWLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLAT 124

Query: 121 HARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 177
             RIA    ++GLPE  LG++PG   T RLPR++G   A+E +   K   +E+  K+G +
Sbjct: 125 DFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALEWIASGKENRAEDALKVGAV 184

Query: 178 DAVVTSEEL-------LKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLAR-L 229
           DAVVT+++L       LK +    LD  A+R+P +  L    KL  + EA      A+ +
Sbjct: 185 DAVVTADKLGAAALQLLKDAINGKLDWKAKRQPKLEPL----KLSKI-EAMMSFTTAKGM 239

Query: 230 QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRAT 289
            A+   P+ P     +  IE+    G    +  EAK F +L     ++ L+ +F   +  
Sbjct: 240 VAQVAGPHYPAPMTAVKTIEKAARFGRDKALEIEAKGFVKLAKTSEAKALIGLFLNDQYV 299

Query: 290 SKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIE 349
                  D   K   V++ AV+G G+MG GIA         +V+K++N   L  G+    
Sbjct: 300 KGKAKKADKIAK--DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAA 357

Query: 350 ANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKA 409
             +   V RG++T  K    L  +   L Y+ F +VD+V+EAV+E+  +K  + +E+E+ 
Sbjct: 358 KLLNKQVERGRITPAKMAGVLNGITPTLSYAGFDNVDIVVEAVVENPKVKAAVLAEVEQH 417

Query: 410 CPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDL 469
                ILA+NTSTI ++++ +     +   G HFF+P H MPL+E++R E++S + I  +
Sbjct: 418 VREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIATV 477

Query: 470 MTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGP 528
           +     + K P+VV +C GF VNR  FPY      L+  G D  RID  + + FG P+GP
Sbjct: 478 VAYASKMGKTPIVVNDCPGFFVNRVLFPYFGGFSKLLRDGADFVRIDKVMEKQFGWPMGP 537

Query: 529 FQLLDLAGYGVAAATSKEFDKAFPDRSFQS--PLVDLLLKSGRNGKANGKGLYTYEKGSK 586
             LLD+ G            + FPDR  +     +D L ++ R G+ NGKG Y YE   K
Sbjct: 538 AYLLDVVGIDTGHHAQAVMAEGFPDRMGKDGRDAIDALFEAKRLGQKNGKGFYAYEADKK 597

Query: 587 PKP----DPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVV 642
            KP    D SVL +++            +     ++EI+  ++ P++NE+ R LEEGIV 
Sbjct: 598 GKPKKLVDSSVLELLKPV--------VYEQRDFDDEEIIARMMIPMINETVRCLEEGIVA 649

Query: 643 RASDLDDASVLGMSFPSYRGGIVFWADAVG-ANYVYTSLKKWSQLYGNFFKPSRFLEERA 701
            A++ D   V G+ FP +RGG   + D++G AN+V  +L       G  ++ +  L E A
Sbjct: 650 TAAEADMGLVYGLGFPPFRGGAFRYLDSIGVANFV--ALADQYAELGALYQVTAKLREMA 707

Query: 702 TKGIP 706
             G  
Sbjct: 708 KNGQS 712

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399 [Fatty acid and phospholipid metabolism, Degradation]. Length = 714

>gnl|CDD|224170 COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

 Score =  271 bits (696), Expect = 2e-85
 Identities = 118/298 (39%), Positives = 177/298 (59%), Gaps = 5/298 (1%)

Query: 305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 364
           ++KVAVIG G+MG+GIA    L    VVLK+++ E L + +  IE N+  LV +GKLT++
Sbjct: 3   IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEE 62

Query: 365 KANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 424
           +A+ AL  +    D +  KD D+VIEAV+E + LK+++F+ELE    P  ILA+NTS++ 
Sbjct: 63  EADAALARITPTTDLAALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLS 122

Query: 425 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 484
           +  + E     +R IG HFF+P  +MPL+E++R E+TS + +  ++   K I K PVVV 
Sbjct: 123 ITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGKTPVVVK 182

Query: 485 NCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLPIGPFQLLDLAGYGVAAA 542
           +  GF VNR        A  L+  GV     ID+A+R   GLP+GPF+L DL G  V   
Sbjct: 183 DVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQGLGLPMGPFELADLIGLDVMLH 242

Query: 543 TSKEFDKAFPDRSF--QSPLVDLLLKSGRNGKANGKGLYTYE-KGSKPKPDPSVLPII 597
             K  ++   D  +    PL+  L+++GR G+ +GKG Y Y  +  KP P+ +   +I
Sbjct: 243 IMKVLNETLGDDPYYRPPPLLRKLVEAGRLGRKSGKGFYDYRGEAIKPLPNEAARCLI 300

Length = 307

>gnl|CDD|202367 pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain

 Score =  209 bits (535), Expect = 9e-64
 Identities = 72/180 (40%), Positives = 113/180 (62%)

Query: 307 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKA 366
           KVAVIG G MG+GIA       + VVL +++ E L K    IE ++  LV +G++T++ A
Sbjct: 1   KVAVIGAGTMGAGIAQVFARAGLEVVLVDISEEALEKARARIEKSLARLVEKGRITEEDA 60

Query: 367 NNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 426
           +  L  +    D ++  D D+VIEAV E++ LK+++F+EL+   PP  ILA+NTS++ + 
Sbjct: 61  DAVLARISFTTDLADAVDADLVIEAVPENLDLKRELFAELDAIAPPDAILASNTSSLSIT 120

Query: 427 IVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNC 486
            +   T   +R IG HFF+P  +MPL+E+VR E+TS + +  ++ + K I K PVVV + 
Sbjct: 121 ELAAATKRPERFIGLHFFNPPPLMPLVEVVRGEKTSPETVATVVALAKKIGKTPVVVKDV 180

This family also includes lambda crystallin. Length = 180

>gnl|CDD|180269 PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  201 bits (514), Expect = 2e-59
 Identities = 101/282 (35%), Positives = 154/282 (54%), Gaps = 5/282 (1%)

Query: 304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQ 363
           G++K+ VIG G MG+GIA    +    VV+ +++   + +G+ TI  ++  LV +GK+T+
Sbjct: 2   GIQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTE 61

Query: 364 DKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI 423
                AL  + G  D  + KD D+VIEA  E++ LK+KIF++L++   P  ILATNTS++
Sbjct: 62  ADKEAALARITGTTDLDDLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSL 121

Query: 424 DLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV 483
            +  +   T   D++IG HFF+P  VM L+EI+R   TS      +  + K I K PV V
Sbjct: 122 SITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRGLATSDATHEAVEALAKKIGKTPVEV 181

Query: 484 GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIRSFGL--PIGPFQLLDLAGYGVA 540
            N  GF VNR   P    A  +++ GV     ID  ++  G   PIGP  L DL G    
Sbjct: 182 KNAPGFVVNRILIPMINEAIFVLAEGVATAEDIDEGMK-LGCNHPIGPLALADLIGLDTC 240

Query: 541 AATSKEFDKAFPDRSFQ-SPLVDLLLKSGRNGKANGKGLYTY 581
            A  +   + F D  ++  PL+  ++ +G  G+  G+G Y Y
Sbjct: 241 LAIMEVLYEGFGDSKYRPCPLLRKMVAAGWLGRKTGRGFYDY 282

Length = 282

>gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional

 Score =  199 bits (509), Expect = 4e-59
 Identities = 93/226 (41%), Positives = 127/226 (56%), Gaps = 10/226 (4%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           M    V +E   D VA+ITL +PP NAL+  ++  L +  ++    D+V+ +V+ G G  
Sbjct: 1   MKFLSVRVE---DHVAVITLNHPPANALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRF 57

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           FS G DI  F  V  A   + +  +  ++    +E   KP++AA+ G ALGGGLELAM C
Sbjct: 58  FSAGADIKEFTSVTEAEQATELAQLG-QVTFERVEKFSKPVIAAIHGAALGGGLELAMSC 116

Query: 121 HARIAAPKTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 177
           H R A    +LGLPEL LG+IP   GTQRLPR VG +KA+EMML S+ IT  E  K GL+
Sbjct: 117 HIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEMMLTSEPITGAEALKWGLV 176

Query: 178 DAVVTSEELLKVSRLWALDIAARRKPWIRS---LHRTDKLGSLSEA 220
           + V   E LL  ++  A  IA +     R+   L +T K  S  E 
Sbjct: 177 NGVFPEETLLDDAKKLAKKIAGKSPATTRAVLELLQTTKSSSYYEG 222

Length = 257

>gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

 Score =  189 bits (482), Expect = 5e-56
 Identities = 79/190 (41%), Positives = 115/190 (60%), Gaps = 4/190 (2%)

Query: 12  NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
           + GVA ITL  P   NAL++ ++  L    +EA +  DV+ +VLTG G  F  G D+   
Sbjct: 6   DGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKEL 65

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
             +  AG+ +      ++ ++  +    KP++AAV G ALGGGLELA+ C  RIAA   +
Sbjct: 66  AALSDAGEEARAFIRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAK 125

Query: 131 LGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 187
            GLPE+ LG++P   GTQRLPRLVG ++A E++L  + I++EE  +LGL+D VV  EELL
Sbjct: 126 FGLPEVKLGLVPGGGGTQRLPRLVGPARARELLLTGRRISAEEALELGLVDEVVPDEELL 185

Query: 188 KVSRLWALDI 197
             +   A  +
Sbjct: 186 AAALELARRL 195

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. Length = 195

>gnl|CDD|215300 PLN02545, PLN02545, 3-hydroxybutyryl-CoA dehydrogenase

 Score =  189 bits (483), Expect = 7e-55
 Identities = 92/288 (31%), Positives = 153/288 (53%), Gaps = 3/288 (1%)

Query: 305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 364
           ++KV V+G G MGSGIA       + V L + +   L +G+ +I +++  LV +GK++Q+
Sbjct: 4   IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQE 63

Query: 365 KANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 424
           +A+  L  ++   +  E +D D +IEA++ES  LK+K+FSEL++ C P  ILA+NTS+I 
Sbjct: 64  EADATLGRIRCTTNLEELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSIS 123

Query: 425 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 484
           +  +   T    ++IG HF +P  +M L+EI+R   TS +V      + +   K  V   
Sbjct: 124 ITRLASATQRPQQVIGMHFMNPPPIMKLVEIIRGADTSDEVFDATKALAERFGKTVVCSQ 183

Query: 485 NCTGFAVNRAFFPYSQSARLLVSLGVDVFR-IDSAIR-SFGLPIGPFQLLDLAGYGVAAA 542
           +  GF VNR   P    A   +  GV     ID+ ++     P+GP  L D  G     +
Sbjct: 184 DYPGFIVNRILMPMINEAFYALYTGVASKEDIDTGMKLGTNHPMGPLHLADFIGLDTCLS 243

Query: 543 TSKEFDKAFPDRSFQ-SPLVDLLLKSGRNGKANGKGLYTYEKGSKPKP 589
             K   +   D  ++  PL+   + +GR G+ +G+G+Y Y+   +  P
Sbjct: 244 IMKVLHEGLGDSKYRPCPLLVQYVDAGRLGRKSGRGVYHYDGKKRGDP 291

Length = 295

>gnl|CDD|188207 TIGR02279, PaaC-3OHAcCoADH, 3-hydroxyacyl-CoA dehydrogenase PaaC

 Score =  190 bits (483), Expect = 9e-53
 Identities = 107/290 (36%), Positives = 161/290 (55%), Gaps = 5/290 (1%)

Query: 305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 364
           V  VAVIG G MG+GIA         V+L ++ +E L + I  IEA +  LVT+GKLT +
Sbjct: 5   VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAE 64

Query: 365 KANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 424
           +    LK L  V D     D  +VIEA++E++ +K+ +F++LE+ CP   I+A+NTS++ 
Sbjct: 65  ECERTLKRLIPVTDLHALADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLS 124

Query: 425 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 484
           +  +    +  +R+ G HFF+PA VM L+E+V    T+A+V   L        K PV   
Sbjct: 125 ITAIAAGLARPERVAGLHFFNPAPVMALVEVVSGLATAAEVAEQLYETALAWGKQPVHCH 184

Query: 485 NCTGFAVNRAFFP-YSQSARLLVSLGVDVFRIDSAIR-SFGLPIGPFQLLDLAGYGVA-A 541
           +  GF VNR   P Y+++ R L         +D+A+R   G P+GPF+L DL G+ V  A
Sbjct: 185 STPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALRDGAGFPMGPFELTDLIGHDVNFA 244

Query: 542 ATSKEFDKAFPDRSFQ-SPLVDLLLKSGRNGKANGKGLYTY-EKGSKPKP 589
            T   F+  + DR F  S +   L+ +GR G+ +G G+Y Y E+     P
Sbjct: 245 VTCSVFNAFWQDRRFLPSLVQQELVIAGRLGRKSGLGVYDYREEAEAVVP 294

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. Length = 503

>gnl|CDD|236211 PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogenase; Validated

 Score =  180 bits (459), Expect = 2e-49
 Identities = 103/311 (33%), Positives = 161/311 (51%), Gaps = 4/311 (1%)

Query: 305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 364
           +  VAVIG G MG+GIA         V+L +  +         I A +  LV +GKLT +
Sbjct: 7   IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAE 66

Query: 365 KANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 424
           +A+ AL  L+ V   ++  D D+V+EA++E + +KQ +F++LE    P CILATNTS++ 
Sbjct: 67  QADAALARLRPVEALADLADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLS 126

Query: 425 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 484
           +  +       +R+ G HFF+P  +M L+E+V    T   V   L  + +   K PV   
Sbjct: 127 ITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLATDPAVADALYALARAWGKTPVRAK 186

Query: 485 NCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLPIGPFQLLDLAGYGVA-A 541
           +  GF VNRA  PY   A  ++  GV D   ID+ +R + G  +GPF+L+DL G  V  A
Sbjct: 187 DTPGFIVNRAARPYYTEALRVLEEGVADPATIDAILREAAGFRMGPFELMDLIGLDVNHA 246

Query: 542 ATSKEFDKAFPDRSFQ-SPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEEC 600
                + + + +  F+ S +   L+ +GR G+ +G+G Y Y  G+K  P  +  P     
Sbjct: 247 VMESVYRQFYQEPRFRPSLIQQELVAAGRLGRKSGQGFYRYADGAKQPPAEAAPPAALPP 306

Query: 601 RRLSNIMPGGK 611
             +S  + G  
Sbjct: 307 VWVSADVEGDL 317

Length = 507

>gnl|CDD|223955 COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

 Score =  169 bits (430), Expect = 6e-48
 Identities = 87/230 (37%), Positives = 127/230 (55%), Gaps = 8/230 (3%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           DG+A+ITL  P   NAL + ++  L +  +EA +  DV+ +VLTG G  FS G D+    
Sbjct: 13  DGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELL 72

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
                     +     + ++  + D  KP++AAV G ALGGGLELA+ C  RIAA   + 
Sbjct: 73  SPEDGNAAENLMQPGQD-LLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKF 131

Query: 132 GLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT-SEELL 187
           GLPE+ LG++PG   TQRLPRL+G  +A E++L  + I++ E  +LGL+D VV  +EELL
Sbjct: 132 GLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLTGEPISAAEALELGLVDEVVPDAEELL 191

Query: 188 KVSRLWALDIAARRK--PWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 235
           + +   A  +AA        + L R      L+EA E   LA  +   + 
Sbjct: 192 ERALELARRLAAPPLALAATKRLVRAALEADLAEALEAEALAFARLFSSE 241

Length = 257

>gnl|CDD|201191 pfam00378, ECH, Enoyl-CoA hydratase/isomerase family

 Score =  167 bits (425), Expect = 3e-47
 Identities = 82/192 (42%), Positives = 112/192 (58%), Gaps = 6/192 (3%)

Query: 12  NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
             GVA+I L  P  VNAL+  ++  L    E+      VKAIVLTG  G FS G DI   
Sbjct: 5   EAGVAVIKLDRPEAVNALSAELLTELIQALEKLEQDPSVKAIVLTGGPGAFSAGADIKEM 64

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
                A           + + + +ED  KP++AAV G ALGGGLELA+ C  RIAA   +
Sbjct: 65  AAEPLAQQAQFSL--EAQDLWSRLEDLPKPVIAAVNGYALGGGLELALACDYRIAADNAK 122

Query: 131 LGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 187
            GLPE+ LG+IP   GTQRLPR++G+S A+EM+L  + I ++E  K+GL+D VV  E+L+
Sbjct: 123 FGLPEVKLGIIPGAGGTQRLPRIIGVSAALEMLLTGRRIRAQEALKMGLVDKVVPEEQLV 182

Query: 188 KVSRLWALDIAA 199
           + +   A  +A 
Sbjct: 183 EEAIELAQRLAD 194

This family contains a diverse set of enzymes including: Enoyl-CoA hydratase. Napthoate synthase. Carnitate racemase. 3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA delta-isomerase. Length = 245

>gnl|CDD|236434 PRK09260, PRK09260, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  166 bits (422), Expect = 2e-46
 Identities = 91/283 (32%), Positives = 136/283 (48%), Gaps = 3/283 (1%)

Query: 305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 364
           + K+ V+G G+MG GIA    ++     L ++  E L    + I +     V RGKLT+ 
Sbjct: 1   IEKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEA 60

Query: 365 KANNALKMLKGVLDYSE-FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI 423
               AL  L   LD      D D+VIEAV E + LK+ +F   +   P  C +ATNTST+
Sbjct: 61  ARQAALARLSYSLDLKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTM 120

Query: 424 DLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV 483
               +   T   +R+I  HFF+P H M L+E++R   TS + +     V + + K  VVV
Sbjct: 121 SPTEIASFTKRPERVIAMHFFNPVHKMKLVELIRGLETSDETVQVAKEVAEQMGKETVVV 180

Query: 484 GNCTGFAVNRAFFPYSQSARLLVSLGVDVFR-IDSAIR-SFGLPIGPFQLLDLAGYGVAA 541
               GF  +R        A  ++  GV     ID AIR     P+GP +L DL G     
Sbjct: 181 NEFPGFVTSRISALVGNEAFYMLQEGVATAEDIDKAIRLGLNFPMGPLELGDLVGLDTRL 240

Query: 542 ATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKG 584
              K   +   ++   +PL++  +K+GR G+  G+G+Y Y   
Sbjct: 241 NNLKYLHETLGEKYRPAPLLEKYVKAGRLGRKTGRGVYDYTNR 283

Length = 288

>gnl|CDD|181133 PRK07819, PRK07819, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  163 bits (415), Expect = 2e-45
 Identities = 96/284 (33%), Positives = 150/284 (52%), Gaps = 7/284 (2%)

Query: 304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQ 363
            +++V V+G G MG+GIA       + V++ E   E    G   IE ++   V+RGKLT+
Sbjct: 4   AIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTE 63

Query: 364 DKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACP-PHCILATNTST 422
            + + AL  L+   D  +F D  +VIEAV+E   +K +IF+EL+K    P  +LA+NTS+
Sbjct: 64  RERDAALARLRFTTDLGDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSS 123

Query: 423 IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMT-VGKIIKKVPV 481
           I +  +   T    R++G HFF+P  V+PL+E+V T  TS   +         ++ K  V
Sbjct: 124 IPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLVTSEATVARAEEFASDVLGKQVV 183

Query: 482 VVGNCTGFAVNRAFFPYSQSA-RLLVSLGVDVFRIDSAIRSFGL--PIGPFQLLDLAGYG 538
              + +GF VN    PY  SA R++ S       ID A+   G   P+GP +L DL G  
Sbjct: 184 RAQDRSGFVVNALLVPYLLSAIRMVESGFATAEDIDKAMV-LGCAHPMGPLRLSDLVGLD 242

Query: 539 VAAATSKEFDKAFPDRSFQSP-LVDLLLKSGRNGKANGKGLYTY 581
              A +    + F +  +  P L+  ++++G  GK +G+G YTY
Sbjct: 243 TVKAIADSMYEEFKEPLYAPPPLLLRMVEAGLLGKKSGRGFYTY 286

Length = 286

>gnl|CDD|180361 PRK06035, PRK06035, 3-hydroxyacyl-CoA dehydrogenase; Validated

 Score =  158 bits (400), Expect = 2e-43
 Identities = 79/237 (33%), Positives = 131/237 (55%), Gaps = 5/237 (2%)

Query: 305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEAN---VRGLVTRGKL 361
           ++ + V+G G+MG GIA         V + +V+ E L   ++ IE+    +R LV +GK+
Sbjct: 3   IKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKM 62

Query: 362 TQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 421
           ++D+A   +  ++    Y    D D ++EAV E + LK+K+F+ELE+   P  I+A+NTS
Sbjct: 63  SEDEAKAIMARIRTSTSYESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTS 122

Query: 422 TIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPV 481
            I +  +      +DR IG H+F+PA VM L+E+VR   TS +     + + K I K+P+
Sbjct: 123 GIMIAEIATALERKDRFIGMHWFNPAPVMKLIEVVRAALTSEETFNTTVELSKKIGKIPI 182

Query: 482 VVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFR-IDSAIR-SFGLPIGPFQLLDLAG 536
            V +  GF   R    +   A     +G+   + ID   + +FG P+GPF+L+D+ G
Sbjct: 183 EVADVPGFFTTRFIEGWLLEAIRSFEIGIATIKDIDEMCKLAFGFPMGPFELMDIIG 239

Length = 291

>gnl|CDD|235852 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional

 Score =  153 bits (388), Expect = 6e-42
 Identities = 71/191 (37%), Positives = 100/191 (52%), Gaps = 7/191 (3%)

Query: 13  DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           DGV  IT+  P   NAL   +   L D  E A +   V+ +VLTG G  FS G DI  F 
Sbjct: 13  DGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFP 72

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
           K        L P   V   +  I    KP+VAAV G A+G G+ LA+ C    A+   + 
Sbjct: 73  KAPPKPPDELAP---VNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKF 129

Query: 132 GLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 188
            LP   LG+ P   G+  LPRL+G ++A EM+LL + +++EE  ++GL++ VV + EL  
Sbjct: 130 SLPFAKLGLCPDAGGSALLPRLIGRARAAEMLLLGEPLSAEEALRIGLVNRVVPAAELDA 189

Query: 189 VSRLWALDIAA 199
            +   A  +AA
Sbjct: 190 EADAQAAKLAA 200

Length = 259

>gnl|CDD|235707 PRK06130, PRK06130, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  151 bits (382), Expect = 1e-40
 Identities = 89/284 (31%), Positives = 144/284 (50%), Gaps = 10/284 (3%)

Query: 305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 364
           ++ +A+IG G MGSGIA       + VVL +V    L +    IE    G V        
Sbjct: 4   IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERA-LG-VYAPLGIAS 61

Query: 365 KANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 424
                ++M  G+         D+VIEAV E + LK+ +F+ L+  C P  I ATNTS + 
Sbjct: 62  AGMGRIRMEAGLAA--AVSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLP 119

Query: 425 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 484
           +  + +  +  +R +G HFF+PA V+PL+E+VR ++TS Q +   M + + I K PV+V 
Sbjct: 120 ITAIAQAVTRPERFVGTHFFTPADVIPLVEVVRGDKTSPQTVATTMALLRSIGKRPVLVK 179

Query: 485 -NCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLPI---GPFQLLDLAGYG 538
            +  GF  NR     ++ A  L+  GV     ID  ++ S G+ +   GP +  D+ G  
Sbjct: 180 KDIPGFIANRIQHALAREAISLLEKGVASAEDIDEVVKWSLGIRLALTGPLEQRDMNGLD 239

Query: 539 VAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYE 582
           V  A +    +   +R+  SPL++  +++G  G  +G+G Y + 
Sbjct: 240 VHLAVASYLYQDLENRTTPSPLLEEKVEAGELGAKSGQGFYAWP 283

Length = 311

>gnl|CDD|181018 PRK07530, PRK07530, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  149 bits (378), Expect = 3e-40
 Identities = 95/292 (32%), Positives = 144/292 (49%), Gaps = 12/292 (4%)

Query: 305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 364
           ++KV VIG G MG+GIA    L    V+L +V+++ L  G+ TI  N+   V +GK++++
Sbjct: 4   IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEE 63

Query: 365 KANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACP---PHCILATNTS 421
               AL  +    D  +  D D+VIEA  E   +K+KIF++L   CP   P  ILATNTS
Sbjct: 64  ARAAALARISTATDLEDLADCDLVIEAATEDETVKRKIFAQL---CPVLKPEAILATNTS 120

Query: 422 TIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPV 481
           +I +  +   T   +R IG HF +P  VM L+E++R   T              + K   
Sbjct: 121 SISITRLASATDRPERFIGIHFMNPVPVMKLVELIRGIATDEATFEAAKEFVTKLGKTIT 180

Query: 482 VVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIRSFGL--PIGPFQLLDLAGYG 538
           V  +   F VNR   P    A   +  GV  V  ID+A++  G   P+GP +L D  G  
Sbjct: 181 VAEDFPAFIVNRILLPMINEAIYTLYEGVGSVEAIDTAMK-LGANHPMGPLELADFIGLD 239

Query: 539 VAAATSKEFDKAFPDRSFQS-PLVDLLLKSGRNGKANGKGLYTYEKGSKPKP 589
              +  +       D  ++  PL+   +++G  G+  G+G Y Y +G  P P
Sbjct: 240 TCLSIMQVLHDGLADSKYRPCPLLVKYVEAGWLGRKTGRGFYDY-RGEVPVP 290

Length = 292

>gnl|CDD|181069 PRK07657, PRK07657, enoyl-CoA hydratase; Provisional

 Score =  137 bits (347), Expect = 2e-36
 Identities = 71/206 (34%), Positives = 117/206 (56%), Gaps = 23/206 (11%)

Query: 6   VTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSG 63
           ++++     V  ITL  P   NAL++ ++  L++   +     +V+ ++LTG G + F  
Sbjct: 5   ISVDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCA 64

Query: 64  GFDI------NVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELA 117
           G D+      N  Q  H    VSL     +   + ++E   +P++AA+ G+ALGGGLELA
Sbjct: 65  GADLKERAGMNEEQVRHA---VSL-----IRTTMEMVEQLPQPVIAAINGIALGGGLELA 116

Query: 118 MGCHARIAAPKTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 174
           + C  RIAA    LGL E TL +IP   GTQRLPRL+G+ +A E++   + I+++E  ++
Sbjct: 117 LACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEI 176

Query: 175 GLIDAVVTSEELLKVSRLWALDIAAR 200
           GL++ VV +  L +     A++IA +
Sbjct: 177 GLVEFVVPAHLLEEK----AIEIAEK 198

Length = 260

>gnl|CDD|236162 PRK08138, PRK08138, enoyl-CoA hydratase; Provisional

 Score =  135 bits (341), Expect = 1e-35
 Identities = 76/204 (37%), Positives = 103/204 (50%), Gaps = 12/204 (5%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
            A   V +E   DGVA++ L  P   NAL + +   L + F E +   D++AIVLTG   
Sbjct: 4   TATDVVLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEK 63

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            F+ G DI  F    GA ++ L      E     I  C KP++AAV G ALGGG ELAM 
Sbjct: 64  VFAAGADIKEFATA-GAIEMYLR---HTERYWEAIAQCPKPVIAAVNGYALGGGCELAMH 119

Query: 120 CHARIAAPKTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 176
               +A      G PE+ +G++P   GTQRL R VG  KA+ M L    + + E   +GL
Sbjct: 120 ADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRMALTGCMVPAPEALAIGL 179

Query: 177 IDAVVTSEELLKVSRLWALDIAAR 200
           +  VV  E+ L      AL++A  
Sbjct: 180 VSEVVEDEQTLPR----ALELARE 199

Length = 261

>gnl|CDD|180270 PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydratase; Validated

 Score =  131 bits (331), Expect = 3e-34
 Identities = 78/214 (36%), Positives = 117/214 (54%), Gaps = 33/214 (15%)

Query: 8   MEVGN------DGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           ME+ N        +A++T IN P  +NAL    +  L    ++  + D+V A++LTG G 
Sbjct: 1   MELKNVILEKEGHIAVVT-INRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGE 59

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVE----------LVVNLIEDCKKPIVAAVEGLA 109
           +    F       V GA D+S M D++ E           V   +E+  KP++AA+ G A
Sbjct: 60  K---AF-------VAGA-DISEMKDLNEEEGRKFGLLGNKVFRKLENLDKPVIAAINGFA 108

Query: 110 LGGGLELAMGCHARIAAPKTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSI 166
           LGGG EL+M C  RIA+ K + G PE+ LG+ P   GTQRL R+VG  KA E++     I
Sbjct: 109 LGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKAKELIYTGDMI 168

Query: 167 TSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR 200
            +EE  ++GL++ VV  E+L++ ++  A  IAA 
Sbjct: 169 NAEEALRIGLVNKVVEPEKLMEEAKALANKIAAN 202

Length = 260

>gnl|CDD|168580 PRK06495, PRK06495, enoyl-CoA hydratase; Provisional

 Score =  125 bits (315), Expect = 4e-32
 Identities = 70/189 (37%), Positives = 103/189 (54%), Gaps = 2/189 (1%)

Query: 13  DGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQK 72
           D VA++TL NPPVNAL+  +   L   F+E + R DV+ +VLTG G  F  G D+     
Sbjct: 12  DHVAVVTLDNPPVNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPD 71

Query: 73  VH-GAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
           V  G GD+      + E   + I +C KP++AAV G ALG GL L   C   +A+     
Sbjct: 72  VIKGPGDLRAHNRRTRE-CFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVF 130

Query: 132 GLPELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSR 191
           GLPE+ +G+  G +   RL G S    MML    + + E ++ G+I+A +  EEL+  + 
Sbjct: 131 GLPEIDVGLAGGGKHAMRLFGHSLTRRMMLTGYRVPAAELYRRGVIEACLPPEELMPEAM 190

Query: 192 LWALDIAAR 200
             A +IA++
Sbjct: 191 EIAREIASK 199

Length = 257

>gnl|CDD|181359 PRK08293, PRK08293, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  124 bits (314), Expect = 1e-31
 Identities = 84/286 (29%), Positives = 130/286 (45%), Gaps = 11/286 (3%)

Query: 305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQ- 363
           ++ V V G G++GS IA     +   V + +++ E L K  + I       V   + T+ 
Sbjct: 3   IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKE 62

Query: 364 DKANNALKMLKGVLDYSE-FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 422
             A  AL  +    D +E  KD D+VIEAV E   +K   + EL K  P   I ATN+ST
Sbjct: 63  APAEAALNRITLTTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST 122

Query: 423 IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVV 482
           +  +   E T   ++ +  HF +        EI+    T  +V   ++   K I  VP+V
Sbjct: 123 LLPSQFAEATGRPEKFLALHFANEIWKNNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIV 182

Query: 483 VGN-CTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLPIGPFQLLDLAGYGV 539
           +     G+ +N    P+  +A  L + GV D   ID     + G P+GPF +LD+ G   
Sbjct: 183 LKKEQPGYILNSLLVPFLSAALALWAKGVADPETIDKTWMIATGAPMGPFGILDIVGLDT 242

Query: 540 AAATSKEFDKAFPDRSFQSPLVDLLLK----SGRNGKANGKGLYTY 581
           A   +  + +A  D + +      LLK     G+ G A G+G Y Y
Sbjct: 243 AYNITSNWAEATDDENAKK--AAALLKEYIDKGKLGVATGEGFYNY 286

Length = 287

>gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional

 Score =  122 bits (308), Expect = 4e-31
 Identities = 75/206 (36%), Positives = 108/206 (52%), Gaps = 15/206 (7%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           MA P  T+E     V I+TL  P V NAL +     L++ F++  +  +    ++TG G 
Sbjct: 1   MALPFSTVE-RKGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGD 59

Query: 60  R-FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE--DCKKPIVAAVEGLALGGGLEL 116
           + FS G D+    K   AG     P+        L    D  KPI+AAV G+A+GGG EL
Sbjct: 60  KAFSAGNDL----KEQAAGGKRGWPESGF---GGLTSRFDLDKPIIAAVNGVAMGGGFEL 112

Query: 117 AMGCHARIAAPKTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWK 173
           A+ C   +AA      LPE  +G+     G  RLPR +GL +A+ M+L  + +T+ EG +
Sbjct: 113 ALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKRAMGMILTGRRVTAREGLE 172

Query: 174 LGLIDAVVTSEELLKVSRLWALDIAA 199
           LG ++ VV + ELL  +  WA DI A
Sbjct: 173 LGFVNEVVPAGELLAAAERWADDILA 198

Length = 259

>gnl|CDD|180295 PRK05862, PRK05862, enoyl-CoA hydratase; Provisional

 Score =  121 bits (305), Expect = 7e-31
 Identities = 69/197 (35%), Positives = 104/197 (52%), Gaps = 12/197 (6%)

Query: 13  DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
             V +ITL  P  +NAL   ++  L        + + + AIV+TG+   F+ G DI    
Sbjct: 12  GRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMA 71

Query: 72  KVHGAGDVSLMPDVSVELVVNL--IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKT 129
                 D+S M     + + N   +   +KP++AAV G ALGGG ELAM C   IAA   
Sbjct: 72  ------DLSFMDVYKGDYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTA 125

Query: 130 QLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 186
           + G PE+ LGV+P   G+QRL R VG +KA+++ L  + + + E  + GL+  VV +++L
Sbjct: 126 KFGQPEIKLGVLPGMGGSQRLTRAVGKAKAMDLCLTGRMMDAAEAERAGLVSRVVPADKL 185

Query: 187 LKVSRLWALDIAARRKP 203
           L  +   A  IA+   P
Sbjct: 186 LDEALAAATTIASFSLP 202

Length = 257

>gnl|CDD|182026 PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; Provisional

 Score =  118 bits (298), Expect = 6e-30
 Identities = 69/192 (35%), Positives = 104/192 (54%), Gaps = 12/192 (6%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
             V ++TL  P   NAL   ++  L ++ E A +   +   V+TGN   F+ G D+N   
Sbjct: 10  QRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMA 69

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
           +   A     + D   +L    ++   KP++AAV G ALG G ELA+ C   IA    + 
Sbjct: 70  EKDLAA---TLNDPRPQLWQR-LQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARF 125

Query: 132 GLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 188
           GLPE+TLG++P   GTQRL R VG S A +M+L  +SIT+++  + GL+  V   E  L 
Sbjct: 126 GLPEITLGIMPGAGGTQRLIRSVGKSLASQMVLTGESITAQQAQQAGLVSEVFPPE--LT 183

Query: 189 VSRLWALDIAAR 200
           + R  AL +A++
Sbjct: 184 LER--ALQLASK 193

Length = 255

>gnl|CDD|180335 PRK05980, PRK05980, enoyl-CoA hydratase; Provisional

 Score =  118 bits (297), Expect = 9e-30
 Identities = 73/199 (36%), Positives = 110/199 (55%), Gaps = 17/199 (8%)

Query: 13  DGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
           DG+A++TL  P  +NAL   ++  L  + +     + V+A++LTG G R FS G DI+ F
Sbjct: 11  DGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEF 70

Query: 71  QKVHGAGDVSLMPDVSVELVV-------NLIEDCKKPIVAAVEGLALGGGLELAMGCHAR 123
                +  V+   DV++   V         +E   KP++AAV GLA GGG E+    H  
Sbjct: 71  -----SASVAAGADVALRDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLA 125

Query: 124 IAAPKTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 180
           IA+ +     PE+ LG+ P   GTQRLPRL G  +A+E++L   + ++E   ++GL++AV
Sbjct: 126 IASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRALELLLTGDAFSAERALEIGLVNAV 185

Query: 181 VTSEELLKVSRLWALDIAA 199
           V  EELL  +R  A  I  
Sbjct: 186 VPHEELLPAARALARRIIR 204

Length = 260

>gnl|CDD|236373 PRK09076, PRK09076, enoyl-CoA hydratase; Provisional

 Score =  113 bits (286), Expect = 3e-28
 Identities = 70/196 (35%), Positives = 103/196 (52%), Gaps = 22/196 (11%)

Query: 15  VAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF-SGGFDINVFQKV 73
           VAI+TL NPP N      +  LK    E  +  DV A+V+TG+G +F S G D+N+F   
Sbjct: 13  VAILTLNNPPANTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLF--- 69

Query: 74  HGAGDVSLMPDVSVELVVNLIE------DCKKPIVAAVEGLALGGGLELAMGCHARIAAP 127
              GD      V+ E+     E        +   +AA+ G A+GGGLE A+ C  RIA  
Sbjct: 70  -ADGD----KAVAREMARRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEE 124

Query: 128 KTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 184
           + Q+ LPE ++G++P   GTQ LP LVG   A  M+L  + + +    ++GL++ VV   
Sbjct: 125 QAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMILCGERVDAATALRIGLVEEVVEKG 184

Query: 185 ELLKVSRLWALDIAAR 200
           E    +R  AL +A +
Sbjct: 185 E----AREAALALAQK 196

Length = 258

>gnl|CDD|235705 PRK06127, PRK06127, enoyl-CoA hydratase; Provisional

 Score =  113 bits (285), Expect = 5e-28
 Identities = 60/220 (27%), Positives = 102/220 (46%), Gaps = 13/220 (5%)

Query: 13  DGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
            G+  IT  NP   NA+++ +   L      A   D ++ +VLTG G + F  G DI+ F
Sbjct: 19  GGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQF 78

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
           ++     +     + +VE     + D  KP +A + G  +GGG+ +A+ C  RIAA  ++
Sbjct: 79  EESRSDAEAVAAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSR 138

Query: 131 LGLPELTLGV---IPGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 187
            G+P   LG+     G + L  LVG S A ++   ++   + E  ++GL+  V  +++L 
Sbjct: 139 FGIPAARLGLGYGYDGVKNLVDLVGPSAAKDLFYTARRFDAAEALRIGLVHRVTAADDLE 198

Query: 188 KVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLA 227
                +A  IA      +R+  R           E+LK  
Sbjct: 199 TALADYAATIAGNAPLTLRAAKRA--------IAELLKDE 230

Length = 269

>gnl|CDD|181329 PRK08258, PRK08258, enoyl-CoA hydratase; Provisional

 Score =  110 bits (277), Expect = 7e-27
 Identities = 73/205 (35%), Positives = 102/205 (49%), Gaps = 29/205 (14%)

Query: 13  DGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           DGVA ITL  P   N L     A L+D F E    DDVKA+VLTG GG F  G D     
Sbjct: 25  DGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGD----- 79

Query: 72  KVHGA-GDVSLMPDVSVEL---------VVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
            VH   G ++ M     EL         +V  +  C +PI+AAV+G+  G G  LAM   
Sbjct: 80  -VHEIIGPLTKMD--MPELLAFTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASD 136

Query: 122 ARIAAPK-------TQLGLPELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 174
            R+  P        T++GL    +G       LPR++G  +A E++   +S+++EEG + 
Sbjct: 137 LRLGTPSAKTAFLFTRVGLAGADMG---ACALLPRIIGQGRASELLYTGRSMSAEEGERW 193

Query: 175 GLIDAVVTSEELLKVSRLWALDIAA 199
           G  + +V  EELL  ++  A  +AA
Sbjct: 194 GFFNRLVEPEELLAEAQALARRLAA 218

Length = 277

>gnl|CDD|180424 PRK06144, PRK06144, enoyl-CoA hydratase; Provisional

 Score =  106 bits (267), Expect = 1e-25
 Identities = 56/192 (29%), Positives = 94/192 (48%), Gaps = 8/192 (4%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
            +   + +EV   G+A IT   P   NA+   +  GL +  E   +   ++A+VL G G 
Sbjct: 5   TSTDELLLEV-RGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGD 63

Query: 60  R-FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAM 118
           + F  G DI  F+    A D ++  +  ++ V+  +E  + P +AA+ G  +GGG  +A 
Sbjct: 64  KAFVAGTDIAQFRAFSTAED-AVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAA 122

Query: 119 GCHARIAAPKTQLGLP-ELTLG--VIPGT-QRLPRLVGLSKAIEMMLLSKSITSEEGWKL 174
            C  RIA P  + G P   TLG  +      RL  L+G ++  +M+  ++ + +EE    
Sbjct: 123 ACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAARVKDMLFTARLLEAEEALAA 182

Query: 175 GLIDAVVTSEEL 186
           GL++ VV    L
Sbjct: 183 GLVNEVVEDAAL 194

Length = 262

>gnl|CDD|235733 PRK06190, PRK06190, enoyl-CoA hydratase; Provisional

 Score =  104 bits (262), Expect = 5e-25
 Identities = 62/201 (30%), Positives = 96/201 (47%), Gaps = 10/201 (4%)

Query: 13  DGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
           D V  +TL N P   NAL+  +   L     EA + DDV  +VLTG    F  G D+   
Sbjct: 12  DRVRTLTL-NRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDL--- 67

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
            K  G    +     ++          +KP++ A+ G A+ GGLELA+ C   IA+ + +
Sbjct: 68  -KELGGDGSAYGAQDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERAR 126

Query: 131 LGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 187
                  +G++PG   + RLP+ VG+ +A  M L    + + +  + GL+  VV  +ELL
Sbjct: 127 FADTHARVGILPGWGLSVRLPQKVGIGRARRMSLTGDFLDAADALRAGLVTEVVPHDELL 186

Query: 188 KVSRLWALDIAARRKPWIRSL 208
             +R  A  IA      +R+L
Sbjct: 187 PRARRLAASIAGNNPAAVRAL 207

Length = 258

>gnl|CDD|235664 PRK05995, PRK05995, enoyl-CoA hydratase; Provisional

 Score =  102 bits (256), Expect = 3e-24
 Identities = 63/187 (33%), Positives = 90/187 (48%), Gaps = 9/187 (4%)

Query: 7   TMEVGNDG-VAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
           T+E+   G VA +TL  P V NA    ++A L   F    + D V+A+VL G G  F  G
Sbjct: 5   TLEIEQRGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAG 64

Query: 65  FDINVFQKVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHA 122
            D+N  +K+ G  D     D +  L  ++  I  C KP++A V G A  GG+ L   C  
Sbjct: 65  ADLNWMKKMAGYSDDENRAD-ARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDI 123

Query: 123 RIAAPKTQLGLPELTLGVIPGTQRLP---RLVGLSKAIEMMLLSKSITSEEGWKLGLIDA 179
            +AA      L E+ LG+IP     P   R +G   A    L ++   + E  +LGL+  
Sbjct: 124 AVAADHAVFCLSEVRLGLIP-ATISPYVIRAMGERAARRYFLTAERFDAAEALRLGLVHE 182

Query: 180 VVTSEEL 186
           VV +E L
Sbjct: 183 VVPAEAL 189

Length = 262

>gnl|CDD|181254 PRK08150, PRK08150, enoyl-CoA hydratase; Provisional

 Score =  100 bits (252), Expect = 9e-24
 Identities = 65/194 (33%), Positives = 102/194 (52%), Gaps = 14/194 (7%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
           + GVA I L  P   NAL   ++A L+  F      + V+A+VL G G  F  G D++  
Sbjct: 9   DGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSEL 66

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
           ++   AG+  +        V + I+  + P++AA+ G  +GGGLELA   H R+A   T 
Sbjct: 67  RE-RDAGEG-MHHSRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTY 124

Query: 131 LGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVV-TSEEL 186
             LPE   G+  G   + R+PRL+G+++  +MML  +   ++EG +LGL   +V   E L
Sbjct: 125 FALPEGQRGIFVGGGGSVRVPRLIGVARMTDMMLTGRVYDAQEGERLGLAQYLVPAGEAL 184

Query: 187 LKVSRLWALDIAAR 200
            K     A+++A R
Sbjct: 185 DK-----AMELARR 193

Length = 255

>gnl|CDD|236206 PRK08260, PRK08260, enoyl-CoA hydratase; Provisional

 Score =  101 bits (253), Expect = 2e-23
 Identities = 69/213 (32%), Positives = 103/213 (48%), Gaps = 23/213 (10%)

Query: 12  NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDI--- 67
            DG+A ITL  P  +NA  + +   L + F+ A + D V+A+++TG G  F  G D+   
Sbjct: 11  ADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAG 70

Query: 68  -NVF----QKVHGAGDVSLMPDVSVELV------VNL-IEDCKKPIVAAVEGLALGGG-- 113
            N F     +     D     D S + V      V L I D  KP++AAV G A+G G  
Sbjct: 71  GNTFDLDAPRTPVEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGAT 130

Query: 114 LELAMGCHARIAAPKTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEE 170
           + LAM    R+A+   + G      G++P    +  LPRLVGL  A+E +   +   ++E
Sbjct: 131 MTLAM--DIRLASTAARFGFVFGRRGIVPEAASSWFLPRLVGLQTALEWVYSGRVFDAQE 188

Query: 171 GWKLGLIDAVVTSEELLKVSRLWALDIAARRKP 203
               GL+ +V   +ELL  +R  A +IA    P
Sbjct: 189 ALDGGLVRSVHPPDELLPAARALAREIADNTSP 221

Length = 296

>gnl|CDD|215480 PLN02888, PLN02888, enoyl-CoA hydratase

 Score =  100 bits (250), Expect = 2e-23
 Identities = 66/190 (34%), Positives = 102/190 (53%), Gaps = 11/190 (5%)

Query: 14  GVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           G+A IT IN P  +NAL  P++  L   F+     D VK I+LTG+G  F  G D+   +
Sbjct: 19  GIATIT-INRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAE 77

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
           +V   GDV    DV  + V  + E C+KPI+ A+ G A+  G E+A+ C   +A+   + 
Sbjct: 78  EVF-KGDVK---DVETDPVAQM-ERCRKPIIGAINGFAITAGFEIALACDILVASRGAKF 132

Query: 132 GLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 188
                  G+ P    +Q+L R++G ++A E+ L +  +T+E   + GL++ VV   ELLK
Sbjct: 133 IDTHAKFGIFPSWGLSQKLSRIIGANRAREVSLTAMPLTAETAERWGLVNHVVEESELLK 192

Query: 189 VSRLWALDIA 198
            +R  A  I 
Sbjct: 193 KAREVAEAII 202

Length = 265

>gnl|CDD|180472 PRK06210, PRK06210, enoyl-CoA hydratase; Provisional

 Score = 99.8 bits (249), Expect = 3e-23
 Identities = 69/217 (31%), Positives = 105/217 (48%), Gaps = 16/217 (7%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           MA   V  EV + GVA+ITL  P  +NA    + A +    + A +   V+ IVLTG G 
Sbjct: 2   MAYDAVLYEVADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGR 61

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIED----------CKKPIVAAVEGLA 109
            F  G D+   Q +    D     DV    V N   D           +KP++AA+ G  
Sbjct: 62  GFCAGADMGELQTI-DPSDGRRDTDVR-PFVGNRRPDYQTRYHFLTALRKPVIAAINGAC 119

Query: 110 LGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSI 166
            G GL  A+ C  R AA   +        G+I     +  LPRLVG + A++++L +++ 
Sbjct: 120 AGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILPRLVGHANALDLLLSARTF 179

Query: 167 TSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKP 203
            +EE  +LGL++ VV  +EL++ +  +A D+A    P
Sbjct: 180 YAEEALRLGLVNRVVPPDELMERTLAYAEDLARNVSP 216

Length = 272

>gnl|CDD|181325 PRK08252, PRK08252, enoyl-CoA hydratase; Provisional

 Score = 98.9 bits (247), Expect = 4e-23
 Identities = 66/203 (32%), Positives = 98/203 (48%), Gaps = 13/203 (6%)

Query: 2   AAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
            +  V +E     V IIT+  P   NA+   +  GL    +E  +  D+   +LTG GG 
Sbjct: 1   MSDEVLVER-RGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGT 59

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE-DCKKPIVAAVEGLALGGGLELAMG 119
           F  G D+  F      G+    P +       L E   +KP++AAVEG AL GG ELA+ 
Sbjct: 60  FCAGMDLKAF----ARGE---RPSIPGRGFGGLTERPPRKPLIAAVEGYALAGGFELALA 112

Query: 120 CHARIAAPKTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 176
           C   +AA   + GLPE+  G++    G  RLPR +    A+E+ L    +T+E   +LGL
Sbjct: 113 CDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELALTGDMLTAERAHELGL 172

Query: 177 IDAVVTSEELLKVSRLWALDIAA 199
           ++ +    + L  +   A  IAA
Sbjct: 173 VNRLTEPGQALDAALELAERIAA 195

Length = 254

>gnl|CDD|181723 PRK09245, PRK09245, enoyl-CoA hydratase; Provisional

 Score = 97.7 bits (244), Expect = 1e-22
 Identities = 58/197 (29%), Positives = 97/197 (49%), Gaps = 12/197 (6%)

Query: 14  GVAIITLINPPV-NALAIP-IVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
            +  +T+  P   NAL+    V  L        +   V+A++LTG G  FS G ++   +
Sbjct: 12  HIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMR 71

Query: 72  KVHGAGDVSLMPDV------SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIA 125
              GA   S   D+       ++ +   + + + P++AAV G A+G G +LA  C  RIA
Sbjct: 72  ARVGAFGGSPA-DIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIA 130

Query: 126 APKTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 182
           +   +     + LG+IP   G   LPR++G+++A EM     +I +    + GL+  VV 
Sbjct: 131 SETARFAESFVKLGLIPGDGGAWLLPRIIGMARAAEMAFTGDAIDAATALEWGLVSRVVP 190

Query: 183 SEELLKVSRLWALDIAA 199
           +++LL  +R  A  IAA
Sbjct: 191 ADQLLPAARALAERIAA 207

Length = 266

>gnl|CDD|235714 PRK06142, PRK06142, enoyl-CoA hydratase; Provisional

 Score = 97.4 bits (243), Expect = 2e-22
 Identities = 66/208 (31%), Positives = 112/208 (53%), Gaps = 15/208 (7%)

Query: 6   VTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
            T+E+  D VA +TL  P   NA+     + L + F    +  +V+A+VL+G+G  FS G
Sbjct: 8   FTVEL-ADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYG 66

Query: 65  FDI----NVFQKVH---GAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLE 115
            D+     VF ++     A   + +    + L   +N + DC+KP++AAV+G  +GGG++
Sbjct: 67  IDLPAMAGVFGQLGKDGLARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVD 126

Query: 116 LAMGCHARIAAPKTQLGLPELTLGVIP--GT-QRLPRLVGLSKAIEMMLLSKSITSEEGW 172
           L   C  R A+   +  + E+ LG++   G+ QRLPR++G     E+ L  + I + E  
Sbjct: 127 LISACDMRYASADAKFSVREVDLGMVADVGSLQRLPRIIGDGHLRELALTGRDIDAAEAE 186

Query: 173 KLGLIDAVV-TSEELLKVSRLWALDIAA 199
           K+GL++ V   ++ LL  +   A +IAA
Sbjct: 187 KIGLVNRVYDDADALLAAAHATAREIAA 214

Length = 272

>gnl|CDD|200143 TIGR01929, menB, naphthoate synthase (dihydroxynaphthoic acid synthetase)

 Score = 96.8 bits (241), Expect = 2e-22
 Identities = 66/213 (30%), Positives = 99/213 (46%), Gaps = 12/213 (5%)

Query: 6   VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSG 63
           +  E   DG+A IT+  P V NA     V  +    ++A    D+  ++LTG G + F  
Sbjct: 4   IRYEKSTDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCS 63

Query: 64  GFDINVFQKVHGAG---DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           G D    QKV G     D S +  ++V  V   I  C KP++A V G A+GGG  L M C
Sbjct: 64  GGD----QKVRGDYGYIDDSGVHRLNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHMMC 119

Query: 121 HARIAAPKTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 177
              IAA   + G     +G      G+  + R+VG  KA E+  L +   +++   +GL+
Sbjct: 120 DLTIAAENARFGQTGPKVGSFDGGYGSSYMARIVGQKKAREIWFLCRQYDAKQALDMGLV 179

Query: 178 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHR 210
           + VV   +L K +  W  +I  +    IR L  
Sbjct: 180 NTVVPLADLEKETVRWCREILQKSPMAIRMLKA 212

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 259

>gnl|CDD|168278 PRK05864, PRK05864, enoyl-CoA hydratase; Provisional

 Score = 97.2 bits (242), Expect = 2e-22
 Identities = 69/220 (31%), Positives = 108/220 (49%), Gaps = 34/220 (15%)

Query: 14  GVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQK 72
            +A+ITL  P  +N++A  ++  LK+   E +  + V+ +VLTG G  FS G D     K
Sbjct: 19  EIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGAD----HK 74

Query: 73  VHGAGDVSLMPDV-----------SVELVVNLIEDCKK---PIVAAVEGLALGGGLELAM 118
             G      +P V           S+EL+ ++I   ++   P++AAV G A+GGGL LA+
Sbjct: 75  SAGV-----VPHVEGLTRPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLAL 129

Query: 119 GCHARIAAPKTQL-------GLPELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSEEG 171
               R+A+            GL    LG+   +  LPR +G S+A E+ML  + + +EE 
Sbjct: 130 AADIRVASSSAYFRAAGINNGLTASELGL---SYLLPRAIGSSRAFEIMLTGRDVDAEEA 186

Query: 172 WKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRT 211
            ++GL+   V  E+LL      A  +A   +P I    RT
Sbjct: 187 ERIGLVSRQVPDEQLLDTCYAIAARMAGFSRPGIELTKRT 226

Length = 276

>gnl|CDD|179599 PRK03580, PRK03580, carnitinyl-CoA dehydratase; Provisional

 Score = 96.3 bits (240), Expect = 3e-22
 Identities = 58/196 (29%), Positives = 92/196 (46%), Gaps = 15/196 (7%)

Query: 12  NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
           N  +  ITL  P  NA+       + + F       +++  ++TG G + FS G+D+   
Sbjct: 10  NGSILEITLDRPKANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDL--- 66

Query: 71  QKVHGAGDVSLMP--DVSVELVVNLIE--DCKKPIVAAVEGLALGGGLELAMGCHARIAA 126
            K    G+    P  D        L E  D  KP++AAV G A GGG ELA+     + A
Sbjct: 67  -KAAAEGE---APDADFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCA 122

Query: 127 PKTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 183
                 LPE  LG++P   G  RLP+ +  + A EM++  + + +EE  + G+++ VV  
Sbjct: 123 DNASFALPEAKLGIVPDSGGVLRLPKRLPPAIANEMVMTGRRMDAEEALRWGIVNRVVPQ 182

Query: 184 EELLKVSRLWALDIAA 199
            EL+  +R  A  +  
Sbjct: 183 AELMDRARELAQQLVN 198

Length = 261

>gnl|CDD|180423 PRK06143, PRK06143, enoyl-CoA hydratase; Provisional

 Score = 95.9 bits (239), Expect = 4e-22
 Identities = 59/185 (31%), Positives = 88/185 (47%), Gaps = 20/185 (10%)

Query: 13  DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
            GVA +T+ N   +N L  P++  L        +  DV+ +VL G G + F GG DI   
Sbjct: 15  RGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEM 74

Query: 71  QKVHGAGDVSLMPDVSVELVVNL------IEDCKKPIVAAVEGLALGGGLELAMGCHARI 124
                    +L    +   +  L      +     P++A + G  LGGGLELA  C  RI
Sbjct: 75  --------ATLDQASAEAFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRI 126

Query: 125 AAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVV 181
           AA   Q G+PE+ +G IP       LPRL+G ++   ++L  ++I + +    GL+D VV
Sbjct: 127 AAHDAQFGMPEVRVG-IPSVIHAALLPRLIGWARTRWLLLTGETIDAAQALAWGLVDRVV 185

Query: 182 TSEEL 186
              EL
Sbjct: 186 PLAEL 190

Length = 256

>gnl|CDD|178210 PLN02600, PLN02600, enoyl-CoA hydratase

 Score = 94.9 bits (236), Expect = 8e-22
 Identities = 63/192 (32%), Positives = 100/192 (52%), Gaps = 11/192 (5%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-GGRFSGGFDINV 69
           + G+  + L  P   NA+   ++ GL+  FE+  +    + ++L  +  G F  G D+  
Sbjct: 2   DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKE 61

Query: 70  FQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKT 129
            ++     +V    + S+    + +E    P +A VEG ALGGGLELA+ C  RI   + 
Sbjct: 62  -RRKMSPSEVQKFVN-SLRSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEA 119

Query: 130 QLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 186
             GLPE  L +IP   GTQRLPRLVG S+A E++   + I + E   +GL++  V + E 
Sbjct: 120 VFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIGAREAASMGLVNYCVPAGE- 178

Query: 187 LKVSRLWALDIA 198
              +   AL++A
Sbjct: 179 ---AYEKALELA 187

Length = 251

>gnl|CDD|236205 PRK08259, PRK08259, enoyl-CoA hydratase; Provisional

 Score = 94.6 bits (236), Expect = 1e-21
 Identities = 64/198 (32%), Positives = 97/198 (48%), Gaps = 20/198 (10%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
           N  V  + L  P V NA+  P  A L D F    + D     VL G GG F  G D+   
Sbjct: 10  NGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAV 69

Query: 71  Q-----KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIA 125
                 ++H +GD  + P     + ++      KP++AAV G A+ GGLELA+ C  R+A
Sbjct: 70  GTGRGNRLHPSGDGPMGPS---RMRLS------KPVIAAVSGYAVAGGLELALWCDLRVA 120

Query: 126 APKTQLGLPELTLGVIP----GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVV 181
                 G+     GV P    GT RLPRL+G S+A++++L  + + ++E   +GL + VV
Sbjct: 121 EEDAVFGVFCRRWGV-PLIDGGTVRLPRLIGHSRAMDLILTGRPVDADEALAIGLANRVV 179

Query: 182 TSEELLKVSRLWALDIAA 199
              +    +   A ++AA
Sbjct: 180 PKGQARAAAEELAAELAA 197

Length = 254

>gnl|CDD|216084 pfam00725, 3HCDH, 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain

 Score = 89.6 bits (223), Expect = 1e-21
 Identities = 41/97 (42%), Positives = 56/97 (57%), Gaps = 3/97 (3%)

Query: 488 GFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLPIGPFQLLDLAGYGVAAATSK 545
           GF VNR   P    A  LV  GV     ID+A+R   GLP+GPF+L DL G  V     +
Sbjct: 1   GFVVNRLLAPLLNEAIRLVEEGVATPEDIDAAMRLGLGLPMGPFELSDLVGLDVGYHILE 60

Query: 546 EFDKAFPDRSFQ-SPLVDLLLKSGRNGKANGKGLYTY 581
              + F DR+++ SPL++ L+++GR G+  GKG Y Y
Sbjct: 61  VLAEEFGDRAYRPSPLLEKLVEAGRLGRKTGKGFYKY 97

This family also includes lambda crystallin. Some proteins include two copies of this domain. Length = 97

>gnl|CDD|235661 PRK05981, PRK05981, enoyl-CoA hydratase; Provisional

 Score = 94.0 bits (234), Expect = 3e-21
 Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 14/210 (6%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEE-ATSRDDVKAIVLTGNG 58
           M   +VT++  + GVAI+TL +P V NA++I ++ GL +  +     + +V+ +VLTG G
Sbjct: 1   MQFKKVTLDF-DGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAG 59

Query: 59  GRFSGGFDINVFQKVHGAGDVSLMPDVSVEL------VVNLIEDCKKPIVAAVEGLALGG 112
             F  G   N+  +  G  +     D    L       +  + +   PIV AV G A G 
Sbjct: 60  RGFCTG--ANLQGRGSGGRESDSGGDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGV 117

Query: 113 GLELAMGCHARIAAPKTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSE 169
           G+  A+     + A           +G++P    T  LPRLVG ++A+E+ LL + + +E
Sbjct: 118 GMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLVGKARAMELSLLGEKLPAE 177

Query: 170 EGWKLGLIDAVVTSEELLKVSRLWALDIAA 199
              + GL++ VV   EL+  +   A ++A 
Sbjct: 178 TALQWGLVNRVVDDAELMAEAMKLAHELAN 207

Length = 266

>gnl|CDD|181174 PRK07938, PRK07938, enoyl-CoA hydratase; Provisional

 Score = 91.2 bits (227), Expect = 2e-20
 Identities = 58/209 (27%), Positives = 88/209 (42%), Gaps = 17/209 (8%)

Query: 6   VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF 65
           +T      G+A +T+  PPVNAL       L D    A +  D + +VL   G  F+ G 
Sbjct: 3   ITSTTPEPGIAEVTVDYPPVNALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGV 62

Query: 66  DINVFQKVHGAGDVSLMPDVSVELVVN--------LIEDCKKPIVAAVEGLALGGGLELA 117
           DI   Q           P  +  +  N         + +C  P++AAV G  LGGG+ L 
Sbjct: 63  DIKELQAT---------PGFTALIDANRGCFAAFRAVYECAVPVIAAVHGFCLGGGIGLV 113

Query: 118 MGCHARIAAPKTQLGLPELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 177
                 +A+     GLPE+  G +     L RLV       +   + +IT+ E    G +
Sbjct: 114 GNADVIVASDDATFGLPEVDRGALGAATHLQRLVPQHLMRALFFTAATITAAELHHFGSV 173

Query: 178 DAVVTSEELLKVSRLWALDIAARRKPWIR 206
           + VV  ++L + +   A  IAA+    IR
Sbjct: 174 EEVVPRDQLDEAALEVARKIAAKDTRVIR 202

Length = 249

>gnl|CDD|181340 PRK08269, PRK08269, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score = 91.7 bits (228), Expect = 4e-20
 Identities = 80/284 (28%), Positives = 126/284 (44%), Gaps = 20/284 (7%)

Query: 316 MGSGIATAHILNNIYVVLKEVN-------SEYLLKGIKTIEANVRGLVTRGKLTQDKANN 368
           MG GIA A       V L +              +    IE  +  LV  G++   +A+ 
Sbjct: 1   MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADA 60

Query: 369 ALKMLKGVLDYSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 424
            L  +  V+      D     D+V EAV E +  K++    L +      I+A+ TST  
Sbjct: 61  VLARIA-VVARDGAADALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFL 119

Query: 425 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 484
           +  +    +  +R + AH+ +PA++MPL+E+  ++ T   V+  L  + + I KVPVV G
Sbjct: 120 VTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSDATDPAVVDRLAALLERIGKVPVVCG 179

Query: 485 NCTGFAVNR-AFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLP---IGPFQLLDLAGYG 538
              G+ V R      +++AR +V  GV     ID AIR  FGL    +G  + +D  G  
Sbjct: 180 PSPGYIVPRIQALAMNEAAR-MVEEGVASAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCD 238

Query: 539 VAAATSKEFDKAF-PDRSFQSPLVDLLLKSGRNGKANGKGLYTY 581
           +    S+       PDR     +V   ++ GR+G   G G Y Y
Sbjct: 239 ILYYASRYLAGEIGPDRFAPPAIVVRNMEEGRDGLRTGAGFYDY 282

Length = 314

>gnl|CDD|235632 PRK05869, PRK05869, enoyl-CoA hydratase; Validated

 Score = 88.0 bits (218), Expect = 1e-19
 Identities = 59/189 (31%), Positives = 91/189 (48%), Gaps = 9/189 (4%)

Query: 11  GNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
            + G+A + L  PP NAL   +   +     E   RDDV A++L G    FS G D+   
Sbjct: 14  QDAGLATLLLSRPPTNALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPEL 73

Query: 71  QKVHG--AGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
           + +    A   + +   +V+ V  +     KP VAA+ G ALG GL LA+    R++   
Sbjct: 74  RTLSAQEADTAARVRQQAVDAVAAI----PKPTVAAITGYALGAGLTLALAADWRVSGDN 129

Query: 129 TQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 185
            + G  E+  G+ P   G  RL R  G S+A E++   +   +EE   LGLID +V  ++
Sbjct: 130 VKFGATEILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFDAEEALALGLIDEMVAPDD 189

Query: 186 LLKVSRLWA 194
           +   +  WA
Sbjct: 190 VYDAAAAWA 198

Length = 222

>gnl|CDD|223524 COG0447, MenB, Dihydroxynaphthoic acid synthase [Coenzyme metabolism]

 Score = 89.4 bits (222), Expect = 1e-19
 Identities = 72/214 (33%), Positives = 102/214 (47%), Gaps = 15/214 (7%)

Query: 6   VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG---RF 61
           +T E   DG+A IT+  P V NA     V  + D F +A    +V  I+LTGNG     F
Sbjct: 20  ITYEKSVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAF 79

Query: 62  SGGFDINVFQKVHGAG----DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELA 117
             G D    QKV G      D   +P ++V  +  LI    KP++A V G A+GGG  L 
Sbjct: 80  CSGGD----QKVRGDSGGYVDDDGIPRLNVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLH 135

Query: 118 MGCHARIAAPKTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 174
           + C   IAA     G     +G      G+  L R+VG  KA E+  L +   +EE   +
Sbjct: 136 VVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAEEALDM 195

Query: 175 GLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 208
           GL++ VV   +L K +  WA ++ A+    +R L
Sbjct: 196 GLVNTVVPHADLEKETVQWAREMLAKSPTALRML 229

Length = 282

>gnl|CDD|181122 PRK07799, PRK07799, enoyl-CoA hydratase; Provisional

 Score = 89.0 bits (221), Expect = 1e-19
 Identities = 57/211 (27%), Positives = 96/211 (45%), Gaps = 26/211 (12%)

Query: 3   APRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF 61
            P   +E       I+T+  P   NAL+  ++  + D ++   +  D+++ +LTG GG F
Sbjct: 4   GPHALVE-QRGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAF 62

Query: 62  SGGFDINVFQKVH-------GAGDVSLMPDVSVELVVNLIED--CKKPIVAAVEGLALGG 112
             G D+    K         G+ D S +          L++     KP++AAVEG A+ G
Sbjct: 63  CAGMDLKAATKKPPGDSFKDGSYDPSRID--------ALLKGRRLTKPLIAAVEGPAIAG 114

Query: 113 GLELAMGCHARIAAPKTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSE 169
           G E+  G   R+A    + G+ E    + P      RL R +  + A +++L  + IT+ 
Sbjct: 115 GTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTVACDLLLTGRHITAA 174

Query: 170 EGWKLGLIDAVVTSEELLKVSRLWALDIAAR 200
           E  ++GLI  VV   + L      AL++A  
Sbjct: 175 EAKEIGLIGHVVPDGQALDK----ALELAEL 201

Length = 263

>gnl|CDD|181008 PRK07509, PRK07509, enoyl-CoA hydratase; Provisional

 Score = 88.0 bits (219), Expect = 2e-19
 Identities = 57/196 (29%), Positives = 94/196 (47%), Gaps = 28/196 (14%)

Query: 4   PRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFS 62
            RV++ +  DG+A + L  P  +NAL   +   L    +       ++A++L+G GG F 
Sbjct: 3   DRVSVTI-EDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFC 61

Query: 63  GGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE--------------DCKKPIVAAVEGL 108
            G D+           V+  P  +V+L+   +                   P++AA+EG+
Sbjct: 62  AGLDV---------KSVASSPGNAVKLLFKRLPGNANLAQRVSLGWRRLPVPVIAALEGV 112

Query: 109 ALGGGLELAMGCHARIAAPKTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKS 165
             GGGL++A+G   RIAAP T+L + E   G++P   GT  L  LV    A E+   ++ 
Sbjct: 113 CFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVRKDVARELTYTARV 172

Query: 166 ITSEEGWKLGLIDAVV 181
            ++EE  +LGL+  V 
Sbjct: 173 FSAEEALELGLVTHVS 188

Length = 262

>gnl|CDD|181009 PRK07511, PRK07511, enoyl-CoA hydratase; Provisional

 Score = 84.3 bits (209), Expect = 4e-18
 Identities = 58/210 (27%), Positives = 98/210 (46%), Gaps = 17/210 (8%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           M+A  ++   G     ++TL NP   NAL   + A   +    A     ++A+VLTG GG
Sbjct: 1   MSAELLSRREG--STLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGG 58

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDV---SVELVVNLIE---DCKKPIVAAVEGLALGGG 113
            F  G ++N         + +  P V   S++ + + I       KP++AAVEG A G G
Sbjct: 59  FFCAGGNLNRL-----LENRAKPPSVQAASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAG 113

Query: 114 LELAMGCHARIAAPKTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEE 170
             LA+ C   +AA   +  +  + +G+ P   G+  L R +    A E++L  K I++E 
Sbjct: 114 FSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLATELLLEGKPISAER 173

Query: 171 GWKLGLIDAVVTSEELLKVSRLWALDIAAR 200
              LG+++ +    + L  +   A  +AA 
Sbjct: 174 LHALGVVNRLAEPGQALAEALALADQLAAG 203

Length = 260

>gnl|CDD|180298 PRK05870, PRK05870, enoyl-CoA hydratase; Provisional

 Score = 83.6 bits (207), Expect = 6e-18
 Identities = 65/229 (28%), Positives = 97/229 (42%), Gaps = 13/229 (5%)

Query: 3   APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF 61
              V ++V +DGVA+IT+ +P   NA+   + A L+     A +  DV A+V+TG G  F
Sbjct: 2   MDPVLLDV-DDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAF 60

Query: 62  SGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
             G D+       G      +  +    +   +  C  P +AAV G A+G GL LA+   
Sbjct: 61  CAGADLTALGAAPGRPAEDGLRRIYDGFLA--VASCPLPTIAAVNGAAVGAGLNLALAAD 118

Query: 122 ARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 178
            RIA PK         LG+ PG   T  L R VG   A   +L      +E   + GL  
Sbjct: 119 VRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVARAALLFGMRFDAEAAVRHGLAL 178

Query: 179 AVVTSEELLKVSRLWALDIAARRKPWIR----SLHRTDKLGSLSEAREV 223
            V   ++ +  +   A   AA  +  +     S+  T  L   + A E 
Sbjct: 179 MVA--DDPVAAALELAAGPAAAPRELVLATKASMRATASLAQHAAAVEF 225

Length = 249

>gnl|CDD|131333 TIGR02280, PaaB1, phenylacetate degradation probable enoyl-CoA hydratase paaB

 Score = 83.7 bits (207), Expect = 7e-18
 Identities = 57/185 (30%), Positives = 89/185 (48%), Gaps = 16/185 (8%)

Query: 13  DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
            GVA +TL  P  +N+    +   L++  E    RDD +A++LTG G  F  G D++   
Sbjct: 7   AGVARLTLNRPDKLNSFTAEMHLELREALERV-ERDDARALMLTGAGRGFCAGQDLSERN 65

Query: 72  KVHGAGDVSLMPDV--SVEL----VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIA 125
              G       PD+  ++E     +V  +     P+V AV G+A G G  LA+ C   +A
Sbjct: 66  PTPGG-----APDLGRTIETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLA 120

Query: 126 APKTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 182
           A   +       +G+IP   GT  LPRLVG ++A+ + +L + + +      GLI  VV 
Sbjct: 121 AESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLAMLGEKLDARTAASWGLIWQVVD 180

Query: 183 SEELL 187
              L+
Sbjct: 181 DAALM 185

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). Length = 256

>gnl|CDD|178269 PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

 Score = 83.8 bits (207), Expect = 9e-18
 Identities = 55/195 (28%), Positives = 89/195 (45%), Gaps = 15/195 (7%)

Query: 21  INPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKV----- 73
           +N P   NAL++                 +V  I+L+G G  F  G D+     +     
Sbjct: 23  LNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSS 82

Query: 74  ---HGAGDVSLMPDV-SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKT 129
               G     L   +  ++  +  IE C+KP++AA+ G  +GGG+++   C  R  +   
Sbjct: 83  SGDRGRSGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDA 142

Query: 130 QLGLPELTLGVIP--GT-QRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS-EE 185
              + E+ L +    GT QRLP +VG   A+E+ L  +  +  E  +LGL+  V  S E+
Sbjct: 143 FFSVKEVDLAITADLGTLQRLPSIVGYGNAMELALTGRRFSGSEAKELGLVSRVFGSKED 202

Query: 186 LLKVSRLWALDIAAR 200
           L +  RL A  IAA+
Sbjct: 203 LDEGVRLIAEGIAAK 217

Length = 275

>gnl|CDD|236220 PRK08290, PRK08290, enoyl-CoA hydratase; Provisional

 Score = 81.9 bits (203), Expect = 4e-17
 Identities = 64/226 (28%), Positives = 91/226 (40%), Gaps = 31/226 (13%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           M    V  EV    +A ITL  P   NA    ++  L   F  A + D V+ IVL G G 
Sbjct: 1   MEYEYVRYEV-AGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGK 59

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL-----------------------IED 96
            FS G D+          D    PD    L  +                          D
Sbjct: 60  HFSAGHDLGSGTPGR---DRDPGPDQHPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRD 116

Query: 97  CKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGTQRL--PRLVGLS 154
             KP +A V+G  + GGL LA  C   +A+       P + +G IPG +    P  +G  
Sbjct: 117 LPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMG-IPGVEYFAHPWELGPR 175

Query: 155 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR 200
           KA E++     +T++E  +LG+++ VV  +EL   +   A  IAA 
Sbjct: 176 KAKELLFTGDRLTADEAHRLGMVNRVVPRDELEAETLELARRIAAM 221

Length = 288

>gnl|CDD|235936 PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase; Validated

 Score = 80.0 bits (198), Expect = 1e-16
 Identities = 51/210 (24%), Positives = 91/210 (43%), Gaps = 17/210 (8%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG 58
           M    V +    +G+A +T+    V  NA +  +   L + F+        K ++LTG  
Sbjct: 1   MMMKVVELREVEEGIAQVTM-QDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYP 59

Query: 59  GRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAM 118
             F+ G        +   G  +     +   + +L  +C  P++AA++G A+GGGL L +
Sbjct: 60  NYFATGGTQEGLLSLQ-TGKGT----FTEANLYSLALNCPIPVIAAMQGHAIGGGLVLGL 114

Query: 119 GCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLG 175
                + + ++      +  G  PG   T  LP  +GL+   EM+L ++     E  K G
Sbjct: 115 YADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALGQEMLLTARYYRGAELKKRG 174

Query: 176 LIDAVVTSEELLKVSRLWALDIAAR--RKP 203
           +   V+   E+L+     AL++A     KP
Sbjct: 175 VPFPVLPRAEVLEK----ALELARSLAEKP 200

Length = 249

>gnl|CDD|180958 PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated

 Score = 79.6 bits (197), Expect = 2e-16
 Identities = 66/193 (34%), Positives = 95/193 (49%), Gaps = 12/193 (6%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
           DG+A IT+  P V NA     V  + D F +A   D++  I+LTG G + F  G D    
Sbjct: 21  DGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGD---- 76

Query: 71  QKVHGAG---DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAP 127
           QKV G G   D   +P ++V  +  LI  C KP++A V G A+GGG  L + C   IAA 
Sbjct: 77  QKVRGYGGYVDDDGVPRLNVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAAD 136

Query: 128 KTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 184
               G     +G      G   L R+VG  KA E+  L +   ++E   +GL++ VV   
Sbjct: 137 NAIFGQTGPKVGSFDGGYGASYLARIVGQKKAREIWFLCRQYDAQEALDMGLVNTVVPLA 196

Query: 185 ELLKVSRLWALDI 197
           +L K +  W  ++
Sbjct: 197 DLEKETVRWCREM 209

Length = 273

>gnl|CDD|178509 PLN02921, PLN02921, naphthoate synthase

 Score = 80.6 bits (199), Expect = 2e-16
 Identities = 62/186 (33%), Positives = 86/186 (46%), Gaps = 6/186 (3%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
           +G+A IT+  P   NA     V  L+  F +A     V  I+LTG G + F  G D  V 
Sbjct: 75  EGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVR 134

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
            K  G         ++V  +   I    KP++A V G A+GGG  L M C   IAA    
Sbjct: 135 GK-DGYVGPDDAGRLNVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAV 193

Query: 131 LGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 187
            G     +G      G+  + RLVG  KA EM  L++  T+ E  K+GL++ VV  +EL 
Sbjct: 194 FGQTGPKVGSFDAGYGSSIMARLVGQKKAREMWFLARFYTASEALKMGLVNTVVPLDELE 253

Query: 188 KVSRLW 193
             +  W
Sbjct: 254 GETVKW 259

Length = 327

>gnl|CDD|236044 PRK07531, PRK07531, bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

 Score = 81.3 bits (201), Expect = 5e-16
 Identities = 65/251 (25%), Positives = 110/251 (43%), Gaps = 33/251 (13%)

Query: 304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQ 363
            + K A IGGG++G G A   +L  I V + + + E     I  + AN            
Sbjct: 3   MIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERI-IGEVLAN------------ 49

Query: 364 DKANNALKMLKGV-------LDYSE-----FKDVDMVIEAVIESVPLKQKIFSELEKACP 411
             A  A  ML          L +           D + E+V E + LK+++ +E++ A  
Sbjct: 50  --AERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWIQESVPERLDLKRRVLAEIDAAAR 107

Query: 412 PHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMT 471
           P  ++ ++TS    + + E  +  +R+  AH ++P +++PL+E+V   +TS + I     
Sbjct: 108 PDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTSPETIRRAKE 167

Query: 472 VGKIIKKVPVVVGN-CTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGL---P 525
           + + I   PV +      F  +R      + A  LV  G+     ID  IR SFGL    
Sbjct: 168 ILREIGMKPVHIAKEIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRWAQ 227

Query: 526 IGPFQLLDLAG 536
           +G F+   +AG
Sbjct: 228 MGLFETYRIAG 238

Length = 495

>gnl|CDD|132254 TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hydrolase

 Score = 77.7 bits (191), Expect = 7e-16
 Identities = 63/199 (31%), Positives = 94/199 (47%), Gaps = 20/199 (10%)

Query: 13  DGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINV 69
           +G+A I  IN P  +NA        L    ++A     +  IVL G G + F  G D   
Sbjct: 10  NGIAWIM-INRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGD--- 65

Query: 70  FQKVH-----GAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARI 124
            Q  H     G G + L     +E + + I D  KP++A V+G A+GGG  L   C   I
Sbjct: 66  -QSTHDGGYDGRGTIGL----PMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTI 120

Query: 125 AAPKTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVV 181
           A+ K Q G     +G +    GT  L R+VG  KA E+  L +  T++E   +GL++AVV
Sbjct: 121 ASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKAREIWYLCRRYTAQEALAMGLVNAVV 180

Query: 182 TSEELLKVSRLWALDIAAR 200
             ++L    + W  +I  +
Sbjct: 181 PHDQLDAEVQKWCDEIVEK 199

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen. Length = 256

>gnl|CDD|235991 PRK07327, PRK07327, enoyl-CoA hydratase; Provisional

 Score = 77.8 bits (192), Expect = 8e-16
 Identities = 64/204 (31%), Positives = 99/204 (48%), Gaps = 14/204 (6%)

Query: 4   PRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFS 62
           P +  +    GV  I L  P   NA    +   L D + +     DV+ +++ G G  FS
Sbjct: 11  PALRFDRPPPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFS 70

Query: 63  GGFDINVFQKVHGAGDVSLMPDVSVE---LVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            G D+ + +++  A D  +   V  E   LV N+I +C KPIV+A+ G A+G GL  A+ 
Sbjct: 71  AGGDLALVEEM--ADDFEVRARVWREARDLVYNVI-NCDKPIVSAIHGPAVGAGLVAALL 127

Query: 120 CHARIAAPKTQLGLPELTLGVIPGTQRL---PRLVGLSKAIEMMLLSKSITSEEGWKLGL 176
               IAA   ++      LGV  G       P L G++KA   +LL + ++ EE  ++GL
Sbjct: 128 ADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAKAKYYLLLCEPVSGEEAERIGL 187

Query: 177 IDAVVTSEELLKVSRLWALDIAAR 200
           +   V  +ELL      AL++A R
Sbjct: 188 VSLAVDDDELLPK----ALEVAER 207

Length = 268

>gnl|CDD|235706 PRK06129, PRK06129, 3-hydroxyacyl-CoA dehydrogenase; Validated

 Score = 77.4 bits (191), Expect = 2e-15
 Identities = 70/249 (28%), Positives = 115/249 (46%), Gaps = 20/249 (8%)

Query: 306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDK 365
             VA+IG GL+G   A         V L + +          I   +  L     L  + 
Sbjct: 3   GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEA 62

Query: 366 ANNALKMLKGVLDYSE-FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 424
            +  L  ++     ++   D D V E+  E++ LK+ +F+EL+   PPH ILA++TS + 
Sbjct: 63  PDAVLARIRVTDSLADAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALL 122

Query: 425 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 484
            +   E  + ++R + AH  +P +++P++E+V    T+   +     + +   + PV + 
Sbjct: 123 ASAFTEHLAGRERCLVAHPINPPYLIPVVEVVPAPWTAPATLARAEALYRAAGQSPVRLR 182

Query: 485 -NCTGFAVNRAFFPYSQSARL-----LVSLGV-DVFRIDSAIRSFGLP-----IGPFQLL 532
               GF +NR      Q A L     LV+ GV  V  ID+ IR  GL      +GPF+ +
Sbjct: 183 REIDGFVLNRL-----QGALLREAFRLVADGVASVDDIDAVIRD-GLGLRWSFMGPFETI 236

Query: 533 DL-AGYGVA 540
           DL A  GVA
Sbjct: 237 DLNAPGGVA 245

Length = 308

>gnl|CDD|132233 TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecarbonyl-CoA hydratase

 Score = 75.4 bits (185), Expect = 4e-15
 Identities = 64/232 (27%), Positives = 97/232 (41%), Gaps = 22/232 (9%)

Query: 20  LINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79
           L  P  N +   ++A L     E      ++A++L   G  FS            GA   
Sbjct: 16  LARPKANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFS-----------FGASVA 64

Query: 80  SLMPDVSVELVVNL------IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGL 133
             MPD    ++ +L      + D   PI+ AV G  LGGGLE+A   +   AAP  +LG 
Sbjct: 65  EHMPDQCAAMLASLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQ 124

Query: 134 PELTLGVI--PGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSR 191
           PE+ LGV     +  LP  +G   A +++   +SI   EG ++GL +AV    E   +  
Sbjct: 125 PEIVLGVFAPAASCLLPERMGRVAAEDLLYSGRSIDGAEGARIGLANAVAEDPENAAL-A 183

Query: 192 LWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQA 243
            +    A      +R   R  +LG     +   K+A ++A      M  H A
Sbjct: 184 WFDEHPAKLSASSLRFAVRAARLGMNERVKA--KIAEVEALYLEELMATHDA 233

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation. Length = 251

>gnl|CDD|180987 PRK07468, PRK07468, enoyl-CoA hydratase; Provisional

 Score = 75.5 bits (186), Expect = 4e-15
 Identities = 57/195 (29%), Positives = 92/195 (47%), Gaps = 24/195 (12%)

Query: 7   TMEVGND--GVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
           T+ +  D  GVA +TL  P   NAL+  ++A L        +   V+ +VLTG G  F  
Sbjct: 5   TIRIAVDARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCA 64

Query: 64  GFDINVFQ---------KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGL 114
           G D+   +         ++  A  +++M        +  + D  KP++  ++G A GGG+
Sbjct: 65  GGDLGWMRAQMTADRATRIEEARRLAMM--------LKALNDLPKPLIGRIQGQAFGGGV 116

Query: 115 ELAMGCHARIAAPKTQLGLPELTLGVIPGTQRLPRLV---GLSKAIEMMLLSKSITSEEG 171
            L   C   IA    + GL E  LG+IP T   P +V   G + A  + + ++   +EE 
Sbjct: 117 GLISVCDVAIAVSGARFGLTETRLGLIPATIS-PYVVARMGEANARRVFMSARLFDAEEA 175

Query: 172 WKLGLIDAVVTSEEL 186
            +LGL+  VV +E L
Sbjct: 176 VRLGLLSRVVPAERL 190

Length = 262

>gnl|CDD|235744 PRK06213, PRK06213, enoyl-CoA hydratase; Provisional

 Score = 74.6 bits (184), Expect = 5e-15
 Identities = 56/184 (30%), Positives = 83/184 (45%), Gaps = 17/184 (9%)

Query: 12  NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
            DGVA ITL +  VNAL+  ++  L    ++A   DD   +V+TG  G FSGGFD+ V  
Sbjct: 10  EDGVATITLDDGKVNALSPAMIDALNAALDQA--EDDRAVVVITGQPGIFSGGFDLKVMT 67

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQ 130
              GA     +      L   L+    KP++ A  G A+  G  L +    RI      +
Sbjct: 68  S--GAQAAIALLTAGSTLARRLLSH-PKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFK 124

Query: 131 LGLPELTLG-VIP------GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 183
           +GL E+ +G  +P         RL       +A+   + ++    EE    G +D VV  
Sbjct: 125 IGLNEVAIGMTMPHAAIELARDRLTP-SAFQRAV---INAEMFDPEEAVAAGFLDEVVPP 180

Query: 184 EELL 187
           E+LL
Sbjct: 181 EQLL 184

Length = 229

>gnl|CDD|168351 PRK06023, PRK06023, enoyl-CoA hydratase; Provisional

 Score = 74.8 bits (184), Expect = 6e-15
 Identities = 55/191 (28%), Positives = 97/191 (50%), Gaps = 7/191 (3%)

Query: 14  GVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQK 72
           GV +I    P   NA+   + A +    + A + D ++A V  G  G FS G D+  F  
Sbjct: 15  GVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLA 74

Query: 73  VHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLG 132
               G  S   ++ ++ ++ L E  +KPIV+ V+GLA+G G  + + C    A+P++   
Sbjct: 75  A-AMGGTSFGSEI-LDFLIALAE-AEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFR 131

Query: 133 LPELTLGVIP--GTQRL-PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKV 189
            P + L ++P  G+  L PRL+G  +A  ++ L +  ++E   + GLI  +V  E +   
Sbjct: 132 TPFVDLALVPEAGSSLLAPRLMGHQRAFALLALGEGFSAEAAQEAGLIWKIVDEEAVEAE 191

Query: 190 SRLWALDIAAR 200
           +   A ++AA+
Sbjct: 192 TLKAAEELAAK 202

Length = 251

>gnl|CDD|236115 PRK07854, PRK07854, enoyl-CoA hydratase; Provisional

 Score = 74.7 bits (184), Expect = 6e-15
 Identities = 62/196 (31%), Positives = 96/196 (48%), Gaps = 17/196 (8%)

Query: 9   EVGNDG-VAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFD 66
            V  DG V  I L  P   NAL   +   L++   +A   +  +AIVLTG G  F  G D
Sbjct: 3   GVTRDGQVLTIELQRPERRNALNAELCEELREAVRKAVD-ESARAIVLTGQGTVFCAGAD 61

Query: 67  INVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA 126
           ++      G       PD  +E++   I+    P++AA+ G A+G GL+LAM C  R+ A
Sbjct: 62  LS------GDVYADDFPDALIEMLHA-IDAAPVPVIAAINGPAIGAGLQLAMACDLRVVA 114

Query: 127 PKTQLGLPELTLG--VIPGT-QRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 183
           P+     P    G  +   T +RL  LVG  +A  M+L ++ +T+E+    G+ + + T 
Sbjct: 115 PEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAMLLGAEKLTAEQALATGMANRIGT- 173

Query: 184 EELLKVSRLWALDIAA 199
              L  ++ WA +IA 
Sbjct: 174 ---LADAQAWAAEIAG 186

Length = 243

>gnl|CDD|236163 PRK08140, PRK08140, enoyl-CoA hydratase; Provisional

 Score = 75.0 bits (185), Expect = 7e-15
 Identities = 61/210 (29%), Positives = 102/210 (48%), Gaps = 18/210 (8%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG 58
           M    + + +   GVA +TL N P  +N+    +   L++  ++    D  +A++LTG G
Sbjct: 1   MMYETILLAI-EAGVATLTL-NRPDKLNSFTREMHRELREALDQV-EDDGARALLLTGAG 57

Query: 59  GRFSGGFDINVFQKVHGAGDVSLMPD--VSVEL----VVNLIEDCKKPIVAAVEGLALGG 112
             F  G D+       G      MPD   S+E     +V  +     P++AAV G+A G 
Sbjct: 58  RGFCAGQDLADRDVTPGGA----MPDLGESIETFYNPLVRRLRALPLPVIAAVNGVAAGA 113

Query: 113 GLELAMGCHARIAAPKTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSE 169
           G  LA+ C   +AA         + +G++P   GT  LPRLVG+++A+ + LL + +++E
Sbjct: 114 GANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARALGLALLGEKLSAE 173

Query: 170 EGWKLGLIDAVVTSEELLKVSRLWALDIAA 199
           +  + GLI  VV    L   ++  A  +A 
Sbjct: 174 QAEQWGLIWRVVDDAALADEAQQLAAHLAT 203

Length = 262

>gnl|CDD|181249 PRK08139, PRK08139, enoyl-CoA hydratase; Validated

 Score = 73.4 bits (181), Expect = 2e-14
 Identities = 57/204 (27%), Positives = 92/204 (45%), Gaps = 7/204 (3%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
             AP +  E   DGVA +TL  P   NAL+  ++A L+   +   +   V+ +VL   G 
Sbjct: 8   TEAPLLLRED-RDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGK 66

Query: 60  RFSGGFDINVFQKVHGAGDVS-LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAM 118
            F  G D+   +   G      L    S   V+  I    +P++A V G+A   G +L  
Sbjct: 67  AFCAGHDLKEMRAARGLAYFRALFARCSR--VMQAIVALPQPVIARVHGIATAAGCQLVA 124

Query: 119 GCHARIAAPKTQLGLPELTLGVIPGTQR--LPRLVGLSKAIEMMLLSKSITSEEGWKLGL 176
            C   +AA   +  +P + +G+   T    L R V   +A+EM+L  + I +    + GL
Sbjct: 125 SCDLAVAADTARFAVPGVNIGLFCSTPMVALSRNVPRKQAMEMLLTGEFIDAATAREWGL 184

Query: 177 IDAVVTSEELLKVSRLWALDIAAR 200
           ++ VV ++ L       A  IAA+
Sbjct: 185 VNRVVPADALDAAVARLAAVIAAK 208

Length = 266

>gnl|CDD|236073 PRK07659, PRK07659, enoyl-CoA hydratase; Provisional

 Score = 72.0 bits (177), Expect = 8e-14
 Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 6/177 (3%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
              VA I L  P   NAL  P++  L    +E  +      +VL GNG  FS G DI + 
Sbjct: 13  EGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMM 71

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
              +       + +   E+VV L     K  ++A+ G A G GL +A+     IA    +
Sbjct: 72  LSSNDESKFDGVMNTISEIVVTLY-TMPKLTISAIHGPAAGLGLSIALTADYVIADISAK 130

Query: 131 LGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 184
           L +  + +G+IP   G   L + VG +KA +++   K +++ E   LGLID V+  +
Sbjct: 131 LAMNFIGIGLIPDGGGHFFLQKRVGENKAKQIIWEGKKLSATEALDLGLIDEVIGGD 187

Length = 260

>gnl|CDD|236213 PRK08272, PRK08272, enoyl-CoA hydratase; Provisional

 Score = 72.4 bits (178), Expect = 8e-14
 Identities = 51/205 (24%), Positives = 81/205 (39%), Gaps = 25/205 (12%)

Query: 6   VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
           +T EV    +A ITL  P   NA+       L+   E A     V  I+++G G  F  G
Sbjct: 12  MTYEV-TGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAG 70

Query: 65  FDINVFQKVHGAGDVSLMPDVSVELVVNLIED-----------------------CKKPI 101
           +D++ + +   +G          + V +L +D                         KP 
Sbjct: 71  YDLSAYAEGSSSGGGGGAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPT 130

Query: 102 VAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGTQRLPRLVGLSKAIEMML 161
           VA V G  + GG ++A+ C   IAA   ++G P   +  +P T      +G  +A  ++ 
Sbjct: 131 VAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPTRVWGVPATGMWAYRLGPQRAKRLLF 190

Query: 162 LSKSITSEEGWKLGLIDAVVTSEEL 186
               IT  +  + GL    V  EEL
Sbjct: 191 TGDCITGAQAAEWGLAVEAVPPEEL 215

Length = 302

>gnl|CDD|180625 PRK06563, PRK06563, enoyl-CoA hydratase; Provisional

 Score = 71.1 bits (175), Expect = 1e-13
 Identities = 54/200 (27%), Positives = 89/200 (44%), Gaps = 12/200 (6%)

Query: 6   VTMEVGNDG-VAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
           V+ E    G V +I L  P   NA    ++  L     E  + D+++  VL  +G  F+ 
Sbjct: 1   VSRER--RGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTA 58

Query: 64  GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHAR 123
           G D+        AG     P+  ++    +     KP+V AV+G  L  G+EL +     
Sbjct: 59  GLDLADVAPKLAAG-GFPFPEGGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIV 117

Query: 124 IAAPKTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 180
           +AA  T+    E+  G++P    T R P+  G   A+  +L      ++E  +LGL+  V
Sbjct: 118 VAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLLTGDEFDAQEALRLGLVQEV 177

Query: 181 VTSEELLKVSRLWALDIAAR 200
           V   E L+     A+++A R
Sbjct: 178 VPPGEQLER----AIELAER 193

Length = 255

>gnl|CDD|236908 PRK11423, PRK11423, methylmalonyl-CoA decarboxylase; Provisional

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 52/193 (26%), Positives = 87/193 (45%), Gaps = 10/193 (5%)

Query: 13  DGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR--FSGGFDINV 69
           + +A IT  NP   NAL+  ++  L     +  +R +++ ++L    G   +S G DI+ 
Sbjct: 12  NKIATITFNNPAKRNALSKVLIDDLMQALSDL-NRPEIRVVILRAPSGSKVWSAGHDIH- 69

Query: 70  FQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKT 129
             ++   G   L  D  +  ++ +I+   KP++A VEG   GG  EL M C   IAA  +
Sbjct: 70  --ELPSGGRDPLSYDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTS 127

Query: 130 QLGLPELTLGV---IPGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 186
              +    LGV   + G        G     EM   +  IT++    +G+++ VV  EEL
Sbjct: 128 TFAMTPANLGVPYNLSGILNFTNDAGFHIVKEMFFTASPITAQRALAVGILNHVVEVEEL 187

Query: 187 LKVSRLWALDIAA 199
              +   A  I+ 
Sbjct: 188 EDFTLQMAHHISE 200

Length = 261

>gnl|CDD|180910 PRK07260, PRK07260, enoyl-CoA hydratase; Provisional

 Score = 68.6 bits (168), Expect = 8e-13
 Identities = 49/186 (26%), Positives = 88/186 (47%), Gaps = 8/186 (4%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           D +A +TL  P V N   IP+   + +    A     V+ +++  NG  FS G D+   +
Sbjct: 10  DDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMK 69

Query: 72  KVHGAGDVSLMPDVSVELVVNL---IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
           +     DV  +  +  ELV  +   I+   KP++  V+G   G    +A+     IA+ K
Sbjct: 70  RAVDEDDVQSLVKI-AELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTK 128

Query: 129 TQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 185
           T+     + +G+ P   G   L R +GL++A  + +  +++T+E+  + G +  V  SE+
Sbjct: 129 TKFIQAFVGVGLAPDAGGLFLLTRAIGLNRATHLAMTGEALTAEKALEYGFVYRVAESEK 188

Query: 186 LLKVSR 191
           L K   
Sbjct: 189 LEKTCE 194

Length = 255

>gnl|CDD|236109 PRK07827, PRK07827, enoyl-CoA hydratase; Provisional

 Score = 68.2 bits (167), Expect = 1e-12
 Identities = 51/157 (32%), Positives = 72/157 (45%), Gaps = 10/157 (6%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
                V   V + GVA +TL +P   NAL+  +VA L D    A +   V+A+VLT  GG
Sbjct: 3   PVDTLVRYAV-DGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGG 61

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL---IEDCKKPIVAAVEGLALGGGLEL 116
            F  G D++  +   G GD           +  L   I +  KP++AA++G    GG  L
Sbjct: 62  TFCAGADLS--EAGGGGGDPYDAAVARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGL 119

Query: 117 AMGCHARIAAPKTQLGLPELTLGVIPGT---QRLPRL 150
              C   +A P++   L E  +GV P       LPRL
Sbjct: 120 VGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRL 156

Length = 260

>gnl|CDD|235938 PRK07112, PRK07112, polyketide biosynthesis enoyl-CoA hydratase; Validated

 Score = 67.0 bits (164), Expect = 3e-12
 Identities = 58/229 (25%), Positives = 91/229 (39%), Gaps = 24/229 (10%)

Query: 7   TMEVGNDG-VAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
           T+ V   G V  + L  P   N +   ++A   D  +          +VL G    F  G
Sbjct: 5   TIRVRQQGDVCFLQLHRPEAQNTINDRLIAECMDVLDRC--EHAATIVVLEGLPEVFCFG 62

Query: 65  FDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCK---KPIVAAVEGLALGGGLELAMGCH 121
            D   F  +    D      +  E + +L           +A V G    GG+       
Sbjct: 63  AD---FSAIAEKPDAGRADLIDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASD 119

Query: 122 ARIAAPKTQLGLPELTLGVIPGTQRLP---RLVGLSKAIEMMLLSKSITSEEGWKLGLID 178
             IA       L EL  G+IP    LP   R +G  KA  M L+++ +T+++ +  GL+D
Sbjct: 120 IVIADETAPFSLSELLFGLIPACV-LPFLIRRIGTQKAHYMTLMTQPVTAQQAFSWGLVD 178

Query: 179 AVVT-SEELLK--VSRLWALDIAA--RRKPWIRSLHRTDKLGSLSEARE 222
           A    S+ LL+  + RL  L+ AA  R K +  +L       +++ AR 
Sbjct: 179 AYGANSDTLLRKHLLRLRCLNKAAVARYKSYASTL-----DDTVAAARP 222

Length = 255

>gnl|CDD|236383 PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydratase/lyase; Validated

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 52/197 (26%), Positives = 89/197 (45%), Gaps = 27/197 (13%)

Query: 6   VTMEVGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
           V +EV  DG+A +TL N P   NA++  +   + D  +     DD   +VLTG G  +S 
Sbjct: 10  VKVEV-EDGIAWVTL-NRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSA 67

Query: 64  GFDIN-VFQKVHGAGDVSLMPDVSVELVVNLIEDC----------KKPIVAAVEGLALGG 112
           G D+   F++     ++         L   +  +           +KP +A V G   GG
Sbjct: 68  GMDLKEYFRETDAQPEI---------LQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGG 118

Query: 113 GLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSE 169
           G    + C   IAA + Q GL E+  G+ PG   ++ +   VG   A+  ++  ++ T  
Sbjct: 119 GFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRDALYYIMTGETFTGR 178

Query: 170 EGWKLGLIDAVVTSEEL 186
           +  ++GL++  V   +L
Sbjct: 179 KAAEMGLVNESVPLAQL 195

Length = 275

>gnl|CDD|236338 PRK08788, PRK08788, enoyl-CoA hydratase; Validated

 Score = 65.3 bits (160), Expect = 2e-11
 Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 3/83 (3%)

Query: 102 VAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGT---QRLPRLVGLSKAIE 158
           +A V+G ALGGG E A+  H  IA    ++G PE+   + PG      L R VG   A E
Sbjct: 125 IALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLARRVGPKLAEE 184

Query: 159 MMLLSKSITSEEGWKLGLIDAVV 181
           ++L  K  T+EE   +GL+D +V
Sbjct: 185 LILSGKLYTAEELHDMGLVDVLV 207

Length = 287

>gnl|CDD|168377 PRK06072, PRK06072, enoyl-CoA hydratase; Provisional

 Score = 63.6 bits (155), Expect = 3e-11
 Identities = 38/169 (22%), Positives = 78/169 (46%), Gaps = 10/169 (5%)

Query: 13  DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           +G AI+T+  P  +NAL + +      K ++  +   ++ +++TG G  F  G D++ F 
Sbjct: 8   EGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEF- 66

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
               A D ++    +   ++  I    K  ++A+ G+  G  + +A+    + A+   + 
Sbjct: 67  ----APDFAIDLRETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKF 122

Query: 132 GLPELTLGVIPGTQR---LPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 177
                 LG+   T     L +L G  +  E+++L    T+EE  + GL+
Sbjct: 123 VTAFQRLGLASDTGVAYFLLKLTG-QRFYEILVLGGEFTAEEAERWGLL 170

Length = 248

>gnl|CDD|235533 PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional

 Score = 64.5 bits (158), Expect = 5e-11
 Identities = 47/147 (31%), Positives = 72/147 (48%), Gaps = 9/147 (6%)

Query: 14  GVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
           GV +ITL N P  +NAL++ ++  +    +     D V A+V+ G G R F  G DI   
Sbjct: 12  GVGVITL-NRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRAL 70

Query: 71  QKVHGAGDVSLMPDV-SVELVVN-LIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
            +   AGD          E  +N LI    KP +A ++G+ +GGG+ ++     RI   +
Sbjct: 71  YEAARAGDPLAADRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTER 130

Query: 129 TQLGLPELTLGVIP---GTQRLPRLVG 152
           T++ +PE  +G  P   GT  L R  G
Sbjct: 131 TKMAMPETGIGFFPDVGGTYFLSRAPG 157

Length = 342

>gnl|CDD|181386 PRK08321, PRK08321, naphthoate synthase; Validated

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 66/226 (29%), Positives = 91/226 (40%), Gaps = 39/226 (17%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG------GR-FSGG 64
            G   I    P V NA     V  L    + A    DV  ++LTGNG      G  F  G
Sbjct: 33  QGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSG 92

Query: 65  FDINVFQKVHG-------AGDVSLMPDVS-------VELVVNLIEDCKKPIVAAVEGLAL 110
            D    Q++ G        GD +   D +       +E V  LI    K ++A V G A 
Sbjct: 93  GD----QRIRGRDGYQYAEGDEADTVDPARAGRLHILE-VQRLIRFMPKVVIAVVPGWAA 147

Query: 111 GGG--------LELAMGCHARIAAPKTQLGLPELTLGVIPGTQRLPRLVGLSKAIEMMLL 162
           GGG        L LA   HAR    +T   +     G   G+  L R VG   A E+  L
Sbjct: 148 GGGHSLHVVCDLTLASREHARFK--QTDADVGSFDGGY--GSAYLARQVGQKFAREIFFL 203

Query: 163 SKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 208
            ++ ++EE   +G ++AVV   EL   +  WA +I  +    +R L
Sbjct: 204 GRTYSAEEAHDMGAVNAVVPHAELETEALEWAREINGKSPTAMRML 249

Length = 302

>gnl|CDD|168796 PRK07066, PRK07066, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score = 59.1 bits (143), Expect = 3e-09
 Identities = 63/242 (26%), Positives = 106/242 (43%), Gaps = 17/242 (7%)

Query: 305 VRKVAVIGGGLMGSGI---ATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL 361
           ++  A IG G++GSG    A AH L+ +           L   +    AN    + R  L
Sbjct: 7   IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANV----ANAWPALERQGL 62

Query: 362 TQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 421
               +   L+ +  +       D D + E+  E   LK ++   + +A  P  I+A++TS
Sbjct: 63  APGASPARLRFVATIEAC--VADADFIQESAPEREALKLELHERISRAAKPDAIIASSTS 120

Query: 422 TIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPV 481
            +       + +  +R +  H F+P +++PL+E++  ERT+ + +   M + + +   P+
Sbjct: 121 GLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERTAPEAVDAAMGIYRALGMRPL 180

Query: 482 -VVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIRSFGLPI-----GPFQLLDL 534
            V     GF  +R      + A  LV+ GV     ID AIR FG  I     G F    L
Sbjct: 181 HVRKEVPGFIADRLLEALWREALHLVNEGVATTGEIDDAIR-FGAGIRWSFMGTFLTYTL 239

Query: 535 AG 536
           AG
Sbjct: 240 AG 241

Length = 321

>gnl|CDD|178462 PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score = 56.7 bits (137), Expect = 2e-08
 Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 13/134 (9%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
             V +ITL  P   N +++ +V+ L +  E+    D V+ I++ G G  FS G D+ +F 
Sbjct: 19  GRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFY 78

Query: 72  KVHGAGDVSLMPDVSVELVVNL------IEDCKKPIVAAVEGLALGGGLELAMGCHARIA 125
                 D     D  +E+V  +      I   KK  VA V GL +GGG  L +    R+ 
Sbjct: 79  D-GRESD-----DSCLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVV 132

Query: 126 APKTQLGLPELTLG 139
             KT    PE ++G
Sbjct: 133 TEKTVFATPEASVG 146

Length = 379

>gnl|CDD|215635 PLN03214, PLN03214, probable enoyl-CoA hydratase/isomerase; Provisional

 Score = 54.9 bits (132), Expect = 4e-08
 Identities = 47/204 (23%), Positives = 86/204 (42%), Gaps = 28/204 (13%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
            A P V ++    G+A++ L   PVN++ + +   L D      +   V+ +V      R
Sbjct: 8   GATPGVRVDRRPGGIAVVWLAKEPVNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRR 67

Query: 61  --FSGGFDINVFQKVHGAGDVSLMPDVSVE-----------LVVNLIEDCKKPIVAAVEG 107
             F+ G DI    +++        P  S              +V L+   +   V A+ G
Sbjct: 68  DVFTAGNDIA---ELYA-------PKTSAARYAEFWLTQTTFLVRLLRS-RLATVCAIRG 116

Query: 108 LALGGGLELAMGCHARIAAPKTQLGLPELTLGV-IP---GTQRLPRLVGLSKAIEMMLLS 163
               GG  +++ C  R+   +  +GL E+ LG+ +P       + R++    A  ++L  
Sbjct: 117 ACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVIDRKVAESLLLRG 176

Query: 164 KSITSEEGWKLGLIDAVVTSEELL 187
           + +   E  +LGLID VV +  L+
Sbjct: 177 RLVRPAEAKQLGLIDEVVPAAALM 200

Length = 278

>gnl|CDD|132244 TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

 Score = 52.6 bits (126), Expect = 3e-07
 Identities = 56/214 (26%), Positives = 91/214 (42%), Gaps = 27/214 (12%)

Query: 16  AIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVFQKV 73
           A I L NP   N+    +V  +   F  A+S  DV A+V T  G + F  G +   + + 
Sbjct: 39  AWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEY 98

Query: 74  HGAGD-------VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA 126
           + AG+       + L  D+     V+ I  C KP++  V G+ +GGG E+ M     IA 
Sbjct: 99  Y-AGNPQEYRQYMRLFNDM-----VSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQ 152

Query: 127 PKTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 183
                G      G  P    T  LP ++G  +A+    L +  ++ +  +LG+I  VV +
Sbjct: 153 DLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWSAHKAKRLGIIMDVVPA 212

Query: 184 EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSL 217
              LKV   +         P + +    D+ G +
Sbjct: 213 ---LKVDGKFV------ANPLVVTDRYLDEFGRI 237

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 360

>gnl|CDD|178568 PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrolase

 Score = 50.9 bits (121), Expect = 1e-06
 Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 9/161 (5%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           MA+    +      V I+TL  P  +NAL+  +++ L   F        VK ++L G+G 
Sbjct: 5   MASQSQVLVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGR 64

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDV-SVELVVN-LIEDCKKPIVAAVEGLALGGGLELA 117
            F  G D+    +    G+  L  +  S E ++N ++    K  V+ + G+ +GGG  ++
Sbjct: 65  AFCAGGDVAAVVRDIEQGNWRLGANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVS 124

Query: 118 MGCHARIAAPKTQLGLPELTLGVIPGT------QRLPRLVG 152
           +    RIA   T   +PE  LG+ P         RLP   G
Sbjct: 125 VHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFG 165

Length = 381

>gnl|CDD|178443 PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score = 50.0 bits (119), Expect = 3e-06
 Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 10/143 (6%)

Query: 20  LINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG 77
           ++N P  +NAL IP+VA LK  +E      D+  +++ G+G  F  G D+     +   G
Sbjct: 56  ILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEG 115

Query: 78  DVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPE 135
           +V         L   V L     KP VA ++G+ +G G  +++    R+   KT    PE
Sbjct: 116 NVEECKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPE 175

Query: 136 LTLGVIPGT------QRLPRLVG 152
           + +G  P         RLP  +G
Sbjct: 176 VQMGFHPDAGASYYLSRLPGYLG 198

Length = 407

>gnl|CDD|215151 PLN02267, PLN02267, enoyl-CoA hydratase/isomerase family protein

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 17/146 (11%)

Query: 51  AIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLAL 110
            ++ T  G  FS GFD+   Q    A     +    +  +V  +     P +AAV G A 
Sbjct: 47  VLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMVAKLRPLVADLISLPMPTIAAVTGHAS 106

Query: 111 GGGLELAMGCHARIAAPKTQ--LGLPELTLG-VIPGTQRLPRLVGLSKAI--------EM 159
             G  LA+  H  +   K +  L + E+ +G  +P        + L +A         ++
Sbjct: 107 AAGFILAL-SHDYVLMRKDRGVLYMSEVDIGLPLP-----DYFMALLRAKIGSPAARRDV 160

Query: 160 MLLSKSITSEEGWKLGLIDAVVTSEE 185
           +L +  +T+EE  ++G++D+   S E
Sbjct: 161 LLRAAKLTAEEAVEMGIVDSAHDSAE 186

Length = 239

>gnl|CDD|183548 PRK12478, PRK12478, enoyl-CoA hydratase; Provisional

 Score = 48.8 bits (116), Expect = 5e-06
 Identities = 57/200 (28%), Positives = 79/200 (39%), Gaps = 38/200 (19%)

Query: 13  DGVAIITLINPP-VNALAIPIVAGLKDKFEEA---TSRD-DVKAIVLTGNGGRFSGGFDI 67
             VA ITL  P  +N     IV  + D+ E A     RD D+K IVL G G  FSGG+D 
Sbjct: 13  GPVATITLNRPEQLNT----IVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDF 68

Query: 68  NVFQKVHGAG----DVSLMPD-----------VSVELV-----VNLIEDCKKPIVAAVEG 107
                  G G      ++M D           V+            I    KP++A V G
Sbjct: 69  -------GGGFQHWGEAMMTDGRWDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHG 121

Query: 108 LALGGGLELAMGCHARIAAPKTQLGLPELTL-GVIPGTQRLPRLVGLSKAIEMMLLSKSI 166
             +GG  + A+     IA+    +G P   + G       L RL  L+K     L  + +
Sbjct: 122 WCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYLTGMWLYRL-SLAKVKWHSLTGRPL 180

Query: 167 TSEEGWKLGLIDAVVTSEEL 186
           T  +  +  LI+  V  E L
Sbjct: 181 TGVQAAEAELINEAVPFERL 200

Length = 298

>gnl|CDD|168168 PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 60/227 (26%), Positives = 93/227 (40%), Gaps = 33/227 (14%)

Query: 7   TMEVGND--GVAIITLINPPVN-ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
           T+E+  D  G A + L     N A    ++  L    ++  S   ++ ++L G G  FS 
Sbjct: 6   TIELIRDPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSA 65

Query: 64  GFDINVFQKVHGAGDVSLMPDVS--VELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
           G D+   Q+       + + D     EL+ NL    K P +A V+G A GG L L   C 
Sbjct: 66  GADLAWMQQSADLDYNTNLDDARELAELMYNLYR-LKIPTLAVVQGAAFGGALGLISCCD 124

Query: 122 ARIAAPKTQLGLPELTLGVIPGT----------QRLPRLVGLS-------KAIEMMLLSK 164
             I A   Q  L E+ +G+ P            +R  R   L+       +A E+ LL++
Sbjct: 125 MAIGADDAQFCLSEVRIGLAPAVISPFVVKAIGERAARRYALTAERFDGRRARELGLLAE 184

Query: 165 SITSEE------GWKLGLI----DAVVTSEELLKVSRLWALDIAARR 201
           S  + E       W   L+     A+  S++LL+      L  A RR
Sbjct: 185 SYPAAELEAQVEAWIANLLLNSPQALRASKDLLREVGDGELSPALRR 231

Length = 265

>gnl|CDD|216084 pfam00725, 3HCDH, 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 5/86 (5%)

Query: 620 IVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTS 679
           +V  +L P++NE+ R++EEG V    D+D A  LG+  P    G    +D VG +  Y  
Sbjct: 3   VVNRLLAPLLNEAIRLVEEG-VATPEDIDAAMRLGLGLPM---GPFELSDLVGLDVGYHI 58

Query: 680 LKKWSQLYGN-FFKPSRFLEERATKG 704
           L+  ++ +G+  ++PS  LE+    G
Sbjct: 59  LEVLAEEFGDRAYRPSPLLEKLVEAG 84

This family also includes lambda crystallin. Some proteins include two copies of this domain. Length = 97

>gnl|CDD|213787 TIGR03222, benzo_boxC, benzoyl-CoA-dihydrodiol lyase

 Score = 42.5 bits (100), Expect = 7e-04
 Identities = 38/124 (30%), Positives = 55/124 (44%), Gaps = 18/124 (14%)

Query: 92  NLIEDCKK----PIVAAVEGLALGGGLELAMGCHARIAAP--KTQLGLPELT-LGVIPGT 144
           N IED  +      +AAV G   GGG ELA+ C   +      + + LPE+  LGV+PGT
Sbjct: 109 NGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLPGT 168

Query: 145 QRLPRLVGLSKAIEMMLLSKSITSEEG--------WKLGLIDAVVTSEELLKVSRLWALD 196
             L R+    + +         T EEG        W+  L+D VV   +        A +
Sbjct: 169 GGLTRVTDKRR-VRRDHADIFCTIEEGVRGKRAKEWR--LVDEVVKPSQFDAAIAERAAE 225

Query: 197 IAAR 200
           +AA+
Sbjct: 226 LAAQ 229

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH. Length = 546

>gnl|CDD|181274 PRK08184, PRK08184, benzoyl-CoA-dihydrodiol lyase; Provisional

 Score = 41.5 bits (98), Expect = 0.001
 Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 102 VAAVEGLALGGGLELAMGCHARIAAP--KTQLGLPELT-LGVIPGTQRLPRLV 151
           +AAV G   GGG ELA+ C   +      + + LPE+  LGV+PGT  L R+ 
Sbjct: 127 IAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVLPGTGGLTRVT 179

Length = 550

>gnl|CDD|236211 PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogenase; Validated

 Score = 39.8 bits (94), Expect = 0.004
 Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 13/94 (13%)

Query: 620 IVEMILFPVVNESCRVLEEGIVVRAS--DLDDASVLGMSFPSYRGGIVFWADAVGANYVY 677
            V MI    VNE+  + ++GI   AS  D+D A  LG+++P    G + W D +GA  + 
Sbjct: 422 TVAMI----VNEAADIAQQGI---ASPADIDLAMRLGLNYPL---GPLAWGDRLGAARIL 471

Query: 678 TSLKKWSQLYGN-FFKPSRFLEERATKGIPLSAP 710
             L+    LYG+  ++PS +L  RA  G+ L + 
Sbjct: 472 RVLENLQALYGDPRYRPSPWLRRRAALGLSLRSE 505

Length = 507

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	721
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	100.0
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	100.0
PRK11730	715	fadB multifunctional fatty acid oxidation complex	100.0
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	100.0
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	100.0
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	100.0
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	100.0
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	100.0
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	100.0
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
KOG1683	380	consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA	100.0
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	100.0
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	100.0
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
KOG1680	290	consensus Enoyl-CoA hydratase [Lipid transport and	100.0
PRK06495	257	enoyl-CoA hydratase; Provisional	100.0
PRK08139	266	enoyl-CoA hydratase; Validated	100.0
PRK05862	257	enoyl-CoA hydratase; Provisional	100.0
PRK07658	257	enoyl-CoA hydratase; Provisional	100.0
PRK05980	260	enoyl-CoA hydratase; Provisional	100.0
PRK06143	256	enoyl-CoA hydratase; Provisional	100.0
PRK07938	249	enoyl-CoA hydratase; Provisional	100.0
PRK05995	262	enoyl-CoA hydratase; Provisional	100.0
PRK06142	272	enoyl-CoA hydratase; Provisional	100.0
PRK09076	258	enoyl-CoA hydratase; Provisional	100.0
PRK08150	255	enoyl-CoA hydratase; Provisional	100.0
PRK05809	260	3-hydroxybutyryl-CoA dehydratase; Validated	100.0
PRK08140	262	enoyl-CoA hydratase; Provisional	100.0
PRK05674	265	gamma-carboxygeranoyl-CoA hydratase; Validated	100.0
PRK09674	255	enoyl-CoA hydratase-isomerase; Provisional	100.0
PRK06563	255	enoyl-CoA hydratase; Provisional	100.0
PRK08138	261	enoyl-CoA hydratase; Provisional	100.0
PRK05981	266	enoyl-CoA hydratase; Provisional	100.0
PRK07657	260	enoyl-CoA hydratase; Provisional	100.0
PRK09245	266	enoyl-CoA hydratase; Provisional	100.0
PLN02888	265	enoyl-CoA hydratase	100.0
PRK07468	262	enoyl-CoA hydratase; Provisional	100.0
PLN02600	251	enoyl-CoA hydratase	100.0
PRK03580	261	carnitinyl-CoA dehydratase; Provisional	100.0
TIGR02280	256	PaaB1 phenylacetate degradation probable enoyl-CoA	100.0
PRK07799	263	enoyl-CoA hydratase; Provisional	100.0
PRK06210	272	enoyl-CoA hydratase; Provisional	100.0
PRK06494	259	enoyl-CoA hydratase; Provisional	100.0
PRK07511	260	enoyl-CoA hydratase; Provisional	100.0
PRK08258	277	enoyl-CoA hydratase; Provisional	100.0
PRK06127	269	enoyl-CoA hydratase; Provisional	100.0
PRK09120	275	p-hydroxycinnamoyl CoA hydratase/lyase; Validated	100.0
PRK08252	254	enoyl-CoA hydratase; Provisional	100.0
PLN03214	278	probable enoyl-CoA hydratase/isomerase; Provisiona	100.0
PRK06688	259	enoyl-CoA hydratase; Provisional	100.0
PLN02664	275	enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA	100.0
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
TIGR01929	259	menB naphthoate synthase (dihydroxynaphthoic acid	100.0
TIGR03210	256	badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb	100.0
PRK07260	255	enoyl-CoA hydratase; Provisional	100.0
PRK07659	260	enoyl-CoA hydratase; Provisional	100.0
PRK11423	261	methylmalonyl-CoA decarboxylase; Provisional	100.0
PRK12478	298	enoyl-CoA hydratase; Provisional	100.0
PRK08260	296	enoyl-CoA hydratase; Provisional	100.0
PRK07396	273	dihydroxynaphthoic acid synthetase; Validated	100.0
PRK08259	254	enoyl-CoA hydratase; Provisional	100.0
PRK06144	262	enoyl-CoA hydratase; Provisional	100.0
PRK06023	251	enoyl-CoA hydratase; Provisional	100.0
TIGR03189	251	dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy	100.0
PRK05864	276	enoyl-CoA hydratase; Provisional	100.0
PRK05870	249	enoyl-CoA hydratase; Provisional	100.0
PRK07327	268	enoyl-CoA hydratase; Provisional	100.0
PRK06190	258	enoyl-CoA hydratase; Provisional	100.0
PRK07112	255	polyketide biosynthesis enoyl-CoA hydratase; Valid	100.0
PLN02921	327	naphthoate synthase	100.0
PRK07509	262	enoyl-CoA hydratase; Provisional	100.0
COG1024	257	CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi	100.0
PRK06072	248	enoyl-CoA hydratase; Provisional	100.0
PF00378	245	ECH: Enoyl-CoA hydratase/isomerase family; InterPr	100.0
PRK07854	243	enoyl-CoA hydratase; Provisional	100.0
PRK07827	260	enoyl-CoA hydratase; Provisional	100.0
PRK07110	249	polyketide biosynthesis enoyl-CoA hydratase; Valid	100.0
PRK05617	342	3-hydroxyisobutyryl-CoA hydrolase; Provisional	100.0
PRK08321	302	naphthoate synthase; Validated	100.0
PLN02874	379	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	100.0
PRK08290	288	enoyl-CoA hydratase; Provisional	100.0
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	100.0
KOG1679	291	consensus Enoyl-CoA hydratase [Lipid transport and	100.0
PRK05869	222	enoyl-CoA hydratase; Validated	100.0
PLN02157	401	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PRK08272	302	enoyl-CoA hydratase; Provisional	100.0
PLN02988	381	3-hydroxyisobutyryl-CoA hydrolase	100.0
PRK08788	287	enoyl-CoA hydratase; Validated	100.0
PRK06213	229	enoyl-CoA hydratase; Provisional	100.0
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	100.0
PLN02851	407	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
TIGR03200	360	dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy	100.0
PLN02267	239	enoyl-CoA hydratase/isomerase family protein	100.0
KOG1681	292	consensus Enoyl-CoA isomerase [Lipid transport and	100.0
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	100.0
COG0447	282	MenB Dihydroxynaphthoic acid synthase [Coenzyme me	100.0
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	100.0
KOG0016	266	consensus Enoyl-CoA hydratase/isomerase [Lipid tra	100.0
KOG1682	287	consensus Enoyl-CoA isomerase [Lipid transport and	100.0
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	100.0
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	100.0
KOG2305	313	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	100.0
cd06558	195	crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy	100.0
KOG1684	401	consensus Enoyl-CoA hydratase [Lipid transport and	99.97
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	99.94
PF00725	97	3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal	99.91
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	99.86
PF00725	97	3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal	99.79
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	99.75
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	99.74
cd07014	177	S49_SppA Signal peptide peptidase A. Signal peptid	99.73
cd07020	187	Clp_protease_NfeD_1 Nodulation formation efficienc	99.7
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	99.69
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.69
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	99.69
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.67
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.67
PRK07417	279	arogenate dehydrogenase; Reviewed	99.65
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	99.64
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	99.63
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.61
PLN02688	266	pyrroline-5-carboxylate reductase	99.6
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.6
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	99.58
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	99.58
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.57
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	99.54
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	99.53
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	99.53
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	99.53
cd07019	211	S49_SppA_1 Signal peptide peptidase A (SppA), a se	99.52
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.52
KOG0409	327	consensus Predicted dehydrogenase [General functio	99.51
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	99.51
PRK08507	275	prephenate dehydrogenase; Validated	99.5
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	99.5
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	99.5
PRK06545	359	prephenate dehydrogenase; Validated	99.49
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	99.49
PRK15059	292	tartronate semialdehyde reductase; Provisional	99.45
PRK08655	437	prephenate dehydrogenase; Provisional	99.45
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	99.45
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	99.45
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	99.45
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	99.44
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	99.44
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	99.42
PRK11730	715	fadB multifunctional fatty acid oxidation complex	99.41
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	99.41
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	99.41
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	99.41
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	99.4
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	99.4
PLN02256	304	arogenate dehydrogenase	99.39
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	99.39
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	99.39
cd00394	161	Clp_protease_like Caseinolytic protease (ClpP) is	99.39
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	99.38
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	99.37
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	99.37
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	99.36
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	99.36
cd07022	214	S49_Sppa_36K_type Signal peptide peptidase A (SppA	99.34
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	99.32
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	99.32
PRK07680	273	late competence protein ComER; Validated	99.31
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	99.31
PRK08818	370	prephenate dehydrogenase; Provisional	99.31
cd07023	208	S49_Sppa_N_C Signal peptide peptidase A (SppA), a	99.31
PLN02858	1378	fructose-bisphosphate aldolase	99.31
PRK05479	330	ketol-acid reductoisomerase; Provisional	99.29
PLN02353	473	probable UDP-glucose 6-dehydrogenase	99.27
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	99.27
cd07016	160	S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-	99.27
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	99.26
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	99.26
TIGR00706	207	SppA_dom signal peptide peptidase SppA, 36K type.	99.26
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	99.24
PLN02858	1378	fructose-bisphosphate aldolase	99.24
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	99.22
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	99.22
PTZ00431	260	pyrroline carboxylate reductase; Provisional	99.2
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	99.18
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	99.17
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.15
PLN02712	667	arogenate dehydrogenase	99.13
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	99.12
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.11
cd07018	222	S49_SppA_67K_type Signal peptide peptidase A (SppA	99.09
PTZ00082	321	L-lactate dehydrogenase; Provisional	99.07
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	99.06
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	99.04
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	99.03
PLN02712	667	arogenate dehydrogenase	99.02
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	99.01
PRK06223	307	malate dehydrogenase; Reviewed	99.0
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.98
PTZ00117	319	malate dehydrogenase; Provisional	98.98
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	98.97
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	98.95
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.94
cd07021	178	Clp_protease_NfeD_like Nodulation formation effici	98.94
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	98.92
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	98.91
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	98.83
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	98.83
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.82
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	98.8
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	98.79
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	98.77
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	98.73
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	98.72
PRK06444	197	prephenate dehydrogenase; Provisional	98.69
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	98.64
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	98.62
cd07015	172	Clp_protease_NfeD Nodulation formation efficiency	98.59
TIGR00112	245	proC pyrroline-5-carboxylate reductase. This enzym	98.5
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	98.46
PRK12480	330	D-lactate dehydrogenase; Provisional	98.46
KOG1683	380	consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA	98.44
COG4007	340	Predicted dehydrogenase related to H2-forming N5,N	98.37
cd07013	162	S14_ClpP Caseinolytic protease (ClpP) is an ATP-de	98.35
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	98.35
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	98.33
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	98.32
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	98.32
PRK10949	618	protease 4; Provisional	98.32
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	98.28
KOG2666	481	consensus UDP-glucose/GDP-mannose dehydrogenase [C	98.26
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	98.26
PRK15076	431	alpha-galactosidase; Provisional	98.26
PRK13243	333	glyoxylate reductase; Reviewed	98.24
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	98.2
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	98.18
PLN02602	350	lactate dehydrogenase	98.18
PRK13403	335	ketol-acid reductoisomerase; Provisional	98.16
PRK06436	303	glycerate dehydrogenase; Provisional	98.15
PRK07574	385	formate dehydrogenase; Provisional	98.14
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	98.14
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	98.14
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	98.13
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	98.12
PLN03139	386	formate dehydrogenase; Provisional	98.12
cd07017	171	S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-	98.06
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	98.05
PRK08605	332	D-lactate dehydrogenase; Validated	98.04
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	98.03
PRK00277	200	clpP ATP-dependent Clp protease proteolytic subuni	98.03
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	98.02
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	98.0
PRK12553	207	ATP-dependent Clp protease proteolytic subunit; Re	98.0
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	97.98
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	97.95
KOG3124	267	consensus Pyrroline-5-carboxylate reductase [Amino	97.95
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	97.93
PRK11778	330	putative inner membrane peptidase; Provisional	97.88
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	97.88
PF00574	182	CLP_protease: Clp protease; InterPro: IPR001907 In	97.85
PRK05442	326	malate dehydrogenase; Provisional	97.82
PRK14512	197	ATP-dependent Clp protease proteolytic subunit; Pr	97.82
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	97.81
CHL00028	200	clpP ATP-dependent Clp protease proteolytic subuni	97.8
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	97.79
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	97.79
PRK05225	487	ketol-acid reductoisomerase; Validated	97.77
PLN00112	444	malate dehydrogenase (NADP); Provisional	97.76
PLN02928	347	oxidoreductase family protein	97.75
COG0616	317	SppA Periplasmic serine proteases (ClpP class) [Po	97.71
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	97.67
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	97.66
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	97.66
TIGR00493	191	clpP ATP-dependent Clp protease, proteolytic subun	97.64
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	97.64
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.6
PLN00106	323	malate dehydrogenase	97.59
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	97.58
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	97.57
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	97.56
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	97.56
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	97.56
TIGR00745	293	apbA_panE 2-dehydropantoate 2-reductase. This mode	97.53
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	97.53
PRK14514	221	ATP-dependent Clp protease proteolytic subunit; Pr	97.51
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	97.5
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	97.49
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	97.47
PRK06932	314	glycerate dehydrogenase; Provisional	97.47
PRK13304	265	L-aspartate dehydrogenase; Reviewed	97.47
PRK12319	256	acetyl-CoA carboxylase subunit alpha; Provisional	97.45
PRK06487	317	glycerate dehydrogenase; Provisional	97.45
KOG1495	332	consensus Lactate dehydrogenase [Energy production	97.43
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	97.43
PRK14513	201	ATP-dependent Clp protease proteolytic subunit; Pr	97.42
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	97.42
PRK12551	196	ATP-dependent Clp protease proteolytic subunit; Re	97.42
PLN03230	431	acetyl-coenzyme A carboxylase carboxyl transferase	97.38
PRK08306	296	dipicolinate synthase subunit A; Reviewed	97.36
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	97.34
PTZ00325	321	malate dehydrogenase; Provisional	97.34
KOG2653	487	consensus 6-phosphogluconate dehydrogenase [Carboh	97.33
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	97.32
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	97.31
PF01343	154	Peptidase_S49: Peptidase family S49 peptidase clas	97.31
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	97.3
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	97.29
CHL00174	296	accD acetyl-CoA carboxylase beta subunit; Reviewed	97.28
PRK04148	134	hypothetical protein; Provisional	97.27
PRK06141	314	ornithine cyclodeaminase; Validated	97.24
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	97.23
PRK05654	292	acetyl-CoA carboxylase subunit beta; Validated	97.23
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	97.21
PF01972	285	SDH_sah: Serine dehydrogenase proteinase; InterPro	97.2
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.2
PLN02306	386	hydroxypyruvate reductase	97.19
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.15
TIGR03133	274	malonate_beta malonate decarboxylase, beta subunit	97.12
CHL00198	322	accA acetyl-CoA carboxylase carboxyltransferase al	97.12
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	97.11
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	97.08
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	97.06
TIGR00515	285	accD acetyl-CoA carboxylase, carboxyl transferase,	97.05
PRK05724	319	acetyl-CoA carboxylase carboxyltransferase subunit	97.03
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.98
TIGR00513	316	accA acetyl-CoA carboxylase, carboxyl transferase,	96.97
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	96.96
COG4091	438	Predicted homoserine dehydrogenase [Amino acid tra	96.96
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.96
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	96.93
COG0740	200	ClpP Protease subunit of ATP-dependent Clp proteas	96.92
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	96.91
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.91
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	96.9
PRK11861	673	bifunctional prephenate dehydrogenase/3-phosphoshi	96.87
PRK05086	312	malate dehydrogenase; Provisional	96.87
PRK07189	301	malonate decarboxylase subunit beta; Reviewed	96.85
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	96.84
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	96.83
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	96.81
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	96.81
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	96.78
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	96.77
COG1486	442	CelF Alpha-galactosidases/6-phospho-beta-glucosida	96.73
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	96.73
PRK12552	222	ATP-dependent Clp protease-like protein; Reviewed	96.72
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	96.71
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	96.7
PRK08618	325	ornithine cyclodeaminase; Validated	96.69
PTZ00075	476	Adenosylhomocysteinase; Provisional	96.69
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	96.67
PRK07340	304	ornithine cyclodeaminase; Validated	96.64
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	96.62
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	96.62
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	96.6
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	96.57
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	96.54
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	96.51
PRK10949	618	protease 4; Provisional	96.49
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	96.43
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	96.43
COG1030	436	NfeD Membrane-bound serine protease (ClpP class) [	96.41
PLN02494	477	adenosylhomocysteinase	96.4
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	96.38
COG2910	211	Putative NADH-flavin reductase [General function p	96.38
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	96.37
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	96.31
PRK08291	330	ectoine utilization protein EutC; Validated	96.31
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	96.25
TIGR03134	238	malonate_gamma malonate decarboxylase, gamma subun	96.23
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	96.23
PRK00961	342	H(2)-dependent methylenetetrahydromethanopterin de	96.19
PRK06407	301	ornithine cyclodeaminase; Provisional	96.14
PRK00048	257	dihydrodipicolinate reductase; Provisional	96.11
PRK06046	326	alanine dehydrogenase; Validated	96.09
TIGR01723	340	hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr	96.05
PLN00203	519	glutamyl-tRNA reductase	96.03
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	96.02
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.99
PRK06823	315	ornithine cyclodeaminase; Validated	95.98
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	95.95
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	95.95
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	95.92
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	95.92
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	95.9
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	95.87
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	95.87
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	95.81
PRK13303	265	L-aspartate dehydrogenase; Provisional	95.8
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	95.7
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	95.68
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.66
PRK07589	346	ornithine cyclodeaminase; Validated	95.61
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	95.6
PRK13940	414	glutamyl-tRNA reductase; Provisional	95.6
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	95.57
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	95.54
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	95.44
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	95.4
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	95.4
PRK02318	381	mannitol-1-phosphate 5-dehydrogenase; Provisional	95.38
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	95.33
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	95.24
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	95.22
TIGR00036	266	dapB dihydrodipicolinate reductase.	95.17
PRK03659	601	glutathione-regulated potassium-efflux system prot	95.15
PRK09496	453	trkA potassium transporter peripheral membrane com	95.07
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.03
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	95.03
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	95.03
PRK10669	558	putative cation:proton antiport protein; Provision	95.03
PRK06199	379	ornithine cyclodeaminase; Validated	95.02
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	95.0
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	94.91
PRK09496	453	trkA potassium transporter peripheral membrane com	94.84
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	94.84
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	94.83
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.8
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	94.78
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	94.78
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	94.75
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	94.68
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	94.65
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	94.6
PRK06153	393	hypothetical protein; Provisional	94.57
PRK06719	157	precorrin-2 dehydrogenase; Validated	94.5
KOG2305	313	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	94.46
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	94.4
PRK03562	621	glutathione-regulated potassium-efflux system prot	94.25
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	94.17
COG0777	294	AccD Acetyl-CoA carboxylase beta subunit [Lipid me	94.17
PLN03075	296	nicotianamine synthase; Provisional	94.16
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	94.14
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.0
PRK05562	223	precorrin-2 dehydrogenase; Provisional	93.95
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	93.87
COG0673	342	MviM Predicted dehydrogenases and related proteins	93.86
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	93.85
PRK12548	289	shikimate 5-dehydrogenase; Provisional	93.84
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	93.81
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	93.76
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	93.65
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.63
PRK08300	302	acetaldehyde dehydrogenase; Validated	93.6
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.57
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.55
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	93.54
PRK15116	268	sulfur acceptor protein CsdL; Provisional	93.54
KOG1494	345	consensus NAD-dependent malate dehydrogenase [Ener	93.52
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	93.35
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	93.33
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	93.31
COG4799	526	Acetyl-CoA carboxylase, carboxyltransferase compon	93.31
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	93.3
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	93.29
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	93.29
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	93.24
PRK08223	287	hypothetical protein; Validated	93.22
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	93.22
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	93.2
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	93.16
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.04
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	92.99
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	92.96
cd05295	452	MDH_like Malate dehydrogenase-like. These MDH-like	92.96
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	92.94
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	92.93
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	92.91
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.85
PRK08328	231	hypothetical protein; Provisional	92.84
COG2344	211	AT-rich DNA-binding protein [General function pred	92.84
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	92.78
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.65
PRK05868	372	hypothetical protein; Validated	92.6
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	92.54
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	92.53
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	92.5
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	92.49
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	92.44
CHL00194	317	ycf39 Ycf39; Provisional	92.4
PRK07236	386	hypothetical protein; Provisional	92.38
KOG2018	430	consensus Predicted dinucleotide-utilizing enzyme	92.35
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.33
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	92.28
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	92.25
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	92.01
COG4074	343	Mth H2-forming N5,N10-methylenetetrahydromethanopt	92.0
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	91.97
PRK07877	722	hypothetical protein; Provisional	91.91
PLN00016	378	RNA-binding protein; Provisional	91.82
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	91.78
COG0300	265	DltE Short-chain dehydrogenases of various substra	91.74
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	91.71
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	91.69
PRK12829	264	short chain dehydrogenase; Provisional	91.68
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	91.68

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=100.00  E-value=9.7e-131  Score=1139.36  Aligned_cols=696  Identities=34%  Similarity=0.541  Sum_probs=618.8

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEE-EEEeCCCCCcCCCCchhhhhccCCC
Q 004972            1 MAAPRVTMEVGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAI-VLTGNGGRFSGGFDINVFQKVHGAG   77 (721)
Q Consensus         1 m~~~~v~~~~~~~~v~~i~l~~p~--~Nal~~~~~~~l~~~l~~~~~~~~v~~v-Vltg~g~~F~aG~Dl~~~~~~~~~~   77 (721)
                      |+++++.+++ +++|++||||||+  .|+||.+|+.+|.+++++++.|+++|++ |+||.|++||+|+|++++.......
T Consensus        10 ~~~~~~~~~~-~~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~~~   88 (737)
T TIGR02441        10 MARTHRHYEV-KGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACKTAQ   88 (737)
T ss_pred             CCCCeEEEEE-ECCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccCChH
Confidence            6678899998 7999999999995  6999999999999999999999999975 5699999999999999986421111


Q ss_pred             cccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCC--ceEeCcccccCcccc---ccccccccC
Q 004972           78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELTLGVIPG---TQRLPRLVG  152 (721)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~--a~~~~pe~~~Gl~P~---~~~l~r~~G  152 (721)
                      ....+....++++ ..+.++||||||+|||+|+|||++|+|+||||||+++  ++|++||+++|++|+   +++|||++|
T Consensus        89 ~~~~~~~~~~~l~-~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG  167 (737)
T TIGR02441        89 EVTQLSQEGQEMF-ERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTG  167 (737)
T ss_pred             HHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhC
Confidence            1222223344566 6799999999999999999999999999999999987  589999999999998   899999999


Q ss_pred             HHHHHHHHHcCCCcCHHHHHHcCCccEEcCC-------------chHHHHHHHHHHHHHhcCchhhhhhhccCCCCCc--
Q 004972          153 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTS-------------EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSL--  217 (721)
Q Consensus       153 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~--  217 (721)
                      ..+|++|+++|++++|+||+++||||+|||+             +++.+.|.++++.++..+....+......+....  
T Consensus       168 ~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~~~~~~~~~~~~~~~~~~~~~~  247 (737)
T TIGR02441       168 VPAALDMMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANGKLSINRDKGLVHKITQYVM  247 (737)
T ss_pred             HHHHHHHHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHhhcccCCccccccccCccchhhc
Confidence            9999999999999999999999999999986             5588888888888765432211100000011000  


Q ss_pred             ---HHHHHHHHHHHHH-HHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCC
Q 004972          218 ---SEAREVLKLARLQ-AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  293 (721)
Q Consensus       218 ---~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~  293 (721)
                         ......+..++++ .++++++||||.+++++++.+...+++++++.|.+.|.+++.|++++++++.|+.+|..+|.+
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~g~~~Ap~~~l~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~al~~~f~~~~~~~~~~  327 (737)
T TIGR02441       248 TNPFVRQQVYKTAEDKVMKQTKGLYPAPLKILDVVRTGYDQGPDAGYEAESKAFGELSMTFESKALIGLFHGQTDCKKNK  327 (737)
T ss_pred             ccchhHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCC
Confidence               1122344445554 457888899999999999999999999999999999999999999999999999999998765


Q ss_pred             CCCCCCCCCCCceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCc
Q 004972          294 NVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKML  373 (721)
Q Consensus       294 ~~~~~~~~~~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i  373 (721)
                      .    ...+++++||+|||+|+||++||..++.+|++|+++|++++.++++.+++++.++..+++|.+++.+.+..+++|
T Consensus       328 ~----~~~~~~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i  403 (737)
T TIGR02441       328 F----GKPQRPVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNL  403 (737)
T ss_pred             C----CCCCCcccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCe
Confidence            3    124468999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeccCccccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCee
Q 004972          374 KGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLL  453 (721)
Q Consensus       374 ~~~~~~~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lv  453 (721)
                      +++++++.+++||+|||||||++++|+++|+++++++++++||+||||+++++++++.+.+|+||+|+|||||++.+++|
T Consensus       404 ~~~~~~~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~Lv  483 (737)
T TIGR02441       404 TPTLDYSGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLL  483 (737)
T ss_pred             EEeCCHHHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCceE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHH
Q 004972          454 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLD  533 (721)
Q Consensus       454 Eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~gfi~nRl~~~~~~Ea~~l~~~Gv~~~~ID~a~~~~G~p~Gpf~~~D  533 (721)
                      ||++++.|++++++.+..|++.+||.||+++|+||||+||++.+|++||++|+++|+++++||+++.++|||+|||+++|
T Consensus       484 Evv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGFi~NRi~~~~~~ea~~lv~eGv~~~~ID~a~~~~G~p~GP~~l~D  563 (737)
T TIGR02441       484 EIITHDGTSKDTLASAVAVGLKQGKVVIVVKDGPGFYTTRCLGPMLAEVIRLLQEGVDPKKLDKLTTKFGFPVGAATLAD  563 (737)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHCCCeEEEECCcCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhchHHHHHHHHHHHHhCCCCCC--CcHHHHHHHHcCCCCcccCccccccCCCC--CCCCCCCchhHHHHHhhhccCCCC
Q 004972          534 LAGYGVAAATSKEFDKAFPDRSF--QSPLVDLLLKSGRNGKANGKGLYTYEKGS--KPKPDPSVLPIIEECRRLSNIMPG  609 (721)
Q Consensus       534 ~~Gld~~~~~~~~l~~~~~~~~~--~~~~l~~~v~~G~~G~k~g~GfY~y~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  609 (721)
                      .+|||+++++.+.+++.+++++.  |++++++|+++|++|+|+|+|||+|++++  ++..++.+..++.....    .|.
T Consensus       564 ~vGld~~~~v~~~l~~~~~~~~~~~~~~~l~~~v~~G~~G~k~G~GfY~y~~~~~~~~~~~~~v~~~~~~~~k----~p~  639 (737)
T TIGR02441       564 EVGVDVAEHVAEDLGKAFGERFGGGSAELLSELVKAGFLGRKSGKGIFIYQEGKKGSKKVNSDADEILAQYKL----PPK  639 (737)
T ss_pred             HhhHHHHHHHHHHHHHhcCcccccccCHHHHHHHHCCCCcccCCCeeEEcCCCCCCcCCCCHHHHHHHHHhcc----Ccc
Confidence            99999999999999999887653  68999999999999999999999998654  45677777776644321    111


Q ss_pred             CCCcccChHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCC
Q 004972          610 GKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN  689 (721)
Q Consensus       610 ~~~~~~~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~  689 (721)
                        ....++++|.||++++++|||++||+|||+.+++|||.+|++|+|||+|+||||+|+|.+|++.+++.++.+++.+|+
T Consensus       640 --~~~~~~g~I~~Rll~~~~nEA~rlLeEGV~a~~~DID~a~~~G~GfP~~~gGP~~~aD~~Gld~v~~~~~~l~~~~g~  717 (737)
T TIGR02441       640 --AEVSSPEDIQIRLVSRFVNEAVLCLEEGILASPSEGDIGAVFGLGFPPFLGGPFRFVDLYGADKLVDKMEKYAAAYGV  717 (737)
T ss_pred             --cccCChHHHHHHHHHHHHHHHHHHhhcCccCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHHhCC
Confidence              013578999999999999999999999997799999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHc-CCCCc
Q 004972          690 FFKPSRFLEERATK-GIPLS  708 (721)
Q Consensus       690 ~~~p~~~l~~~~~~-g~~f~  708 (721)
                      +|+|+++|++|+++ |++||
T Consensus       718 ~~~p~~lL~~~~~~~g~~f~  737 (737)
T TIGR02441       718 QFTPCQLLLDHAKSPGKKFY  737 (737)
T ss_pred             CcCCCHHHHHHHHhcCCCCC
Confidence            99999999999999 99997

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=100.00  E-value=3.6e-129  Score=1124.44  Aligned_cols=694  Identities=31%  Similarity=0.518  Sum_probs=615.3

Q ss_pred             CCCC--cEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCC
Q 004972            1 MAAP--RVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG   77 (721)
Q Consensus         1 m~~~--~v~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~   77 (721)
                      |++.  +++++..+++|++|||||| +.|++|.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++.......
T Consensus         1 ~~~~~~~i~~~~~~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~   80 (714)
T TIGR02437         1 MIYQGKTIQVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALP   80 (714)
T ss_pred             CCcccceEEEEEccCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCC
Confidence            5554  5778754689999999999 689999999999999999999999999999999999999999999986421111


Q ss_pred             --cccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccC
Q 004972           78 --DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVG  152 (721)
Q Consensus        78 --~~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G  152 (721)
                        ....+....++++ +.|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|+   +++|+|++|
T Consensus        81 ~~~~~~~~~~~~~~~-~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG  159 (714)
T TIGR02437        81 DAELIQWLLFANSIF-NKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIG  159 (714)
T ss_pred             HHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhC
Confidence              1112222344556 6799999999999999999999999999999999999999999999999997   899999999


Q ss_pred             HHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCC----cHHHHHHHHHHH
Q 004972          153 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGS----LSEAREVLKLAR  228 (721)
Q Consensus       153 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~  228 (721)
                      ..+|++|++||++++|++|+++||||+++|++++.+++.++++++....+.+....  ..+...    .......+..++
T Consensus       160 ~~~A~~llltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  237 (714)
T TIGR02437       160 ADNALEWIASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKDAINGKLDWKAKR--QPKLEPLKLSKIEAMMSFTTAK  237 (714)
T ss_pred             HHHHHHHHHcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHHHHHHhhcCCcccccC--CCCcccccccchHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999988665432221110  011111    111111233344


Q ss_pred             H-HHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCcee
Q 004972          229 L-QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRK  307 (721)
Q Consensus       229 ~-~~~~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~~~~~~~~~~~~~~k  307 (721)
                      . ..+++.++||||..++++++.+...+++++++.|.+.|.+++.|+++++++++|+.+|..++.+..  ....+++++|
T Consensus       238 ~~~~~~~~~~~pap~~~~~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~~l~~~ff~~r~~~~~~~~--~~~~~~~i~~  315 (714)
T TIGR02437       238 GMVAQVAGPHYPAPMTAVKTIEKAARFGRDKALEIEAKGFVKLAKTSEAKALIGLFLNDQYVKGKAKK--ADKIAKDVKQ  315 (714)
T ss_pred             HHHHHhhcCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhHhhcCCCCC--CCCCccccce
Confidence            4 455788999999999999999999999999999999999999999999999999999999876521  1234578999


Q ss_pred             EEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCCCE
Q 004972          308 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDM  387 (721)
Q Consensus       308 I~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDl  387 (721)
                      |+|||+|+||++||..++.+|++|+++|++++.++++.+++++.++..+++|.+++.+.+..+++|+++++++.+++||+
T Consensus       316 v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDl  395 (714)
T TIGR02437       316 AAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGFDNVDI  395 (714)
T ss_pred             EEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988999999


Q ss_pred             EEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCCCHHHHH
Q 004972          388 VIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVIL  467 (721)
Q Consensus       388 VIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t~~e~~~  467 (721)
                      |||||||++++|+++|+++++++++++||+||||+++++++++.+.+|+||+|+|||||++.+++||||+++.|++++++
T Consensus       396 ViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~g~~Ts~~~~~  475 (714)
T TIGR02437       396 VVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIA  475 (714)
T ss_pred             EEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEeecCCCCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHH-HhcCCCccHHHHHHhhchHHHHHHHHH
Q 004972          468 DLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKE  546 (721)
Q Consensus       468 ~~~~l~~~lG~~~v~v~d~~gfi~nRl~~~~~~Ea~~l~~~Gv~~~~ID~a~-~~~G~p~Gpf~~~D~~Gld~~~~~~~~  546 (721)
                      .+..|++.+||.||+++|.||||+||++.+|++||++|+++|++|++||+++ .++|||||||+++|.+|||+.+++.+.
T Consensus       476 ~~~~~~~~lgk~pv~v~d~pGfi~NRl~~~~~~ea~~l~~eG~~~~~ID~a~~~~~G~p~GPf~l~D~~Gld~~~~i~~~  555 (714)
T TIGR02437       476 TVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFGGFSKLLRDGADFVRIDKVMEKQFGWPMGPAYLLDVVGIDTGHHAQAV  555 (714)
T ss_pred             HHHHHHHHcCCEEEEeCCcccchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhcCCCccCHHHHHHhhhHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999 789999999999999999999999999


Q ss_pred             HHHhCCCCCC--CcHHHHHHHHcCCCCcccCccccccCCCC----CCCCCCCchhHHHHHhhhccCCCCCCCcccChHHH
Q 004972          547 FDKAFPDRSF--QSPLVDLLLKSGRNGKANGKGLYTYEKGS----KPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEI  620 (721)
Q Consensus       547 l~~~~~~~~~--~~~~l~~~v~~G~~G~k~g~GfY~y~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  620 (721)
                      +...+++++.  +++++++|+++|++|+|+|+|||+|+++.    +...|+++..++...+.        ....++.++|
T Consensus       556 ~~~~~~~~~~~~~~~~l~~~v~~G~lG~K~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~i  627 (714)
T TIGR02437       556 MAEGFPDRMGKDGRDAIDALFEAKRLGQKNGKGFYAYEADKKGKPKKLVDSSVLELLKPVVY--------EQRDFDDEEI  627 (714)
T ss_pred             HHHhcCcccccchhHHHHHHHHCCCCcccCCCEEEecccCcCccccCCCCHHHHHHHHHhhc--------ccCCCCHHHH
Confidence            9998887642  56899999999999999999999996431    34566666655543321        1124678899


Q ss_pred             HHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCCCCCCCHHHHHH
Q 004972          621 VEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEER  700 (721)
Q Consensus       621 ~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~  700 (721)
                      .||++++++|||++||+|||+.+++|||.++++|+|||+|+||||+|+|.+|++.+++.++.+. .++++|+|+++|++|
T Consensus       628 ~~Rll~~~~nEa~~ll~eGiva~~~dID~~~~~G~Gfp~~~gGP~~~~D~~Gl~~~~~~~~~~~-~~g~~~~p~~~l~~~  706 (714)
T TIGR02437       628 IARMMIPMINETVRCLEEGIVATAAEADMGLVYGLGFPPFRGGAFRYLDSIGVANFVALADQYA-ELGALYQVTAKLREM  706 (714)
T ss_pred             HHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHHHHHHHHH-HhCCCCCCCHHHHHH
Confidence            9999999999999999999777999999999999999999999999999999999999999665 789999999999999


Q ss_pred             HHcCCCCc
Q 004972          701 ATKGIPLS  708 (721)
Q Consensus       701 ~~~g~~f~  708 (721)
                      +++|++||
T Consensus       707 ~~~g~~f~  714 (714)
T TIGR02437       707 AKNGQSFY  714 (714)
T ss_pred             HHcCCCCC
Confidence            99999997

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=2.5e-127  Score=1112.49  Aligned_cols=695  Identities=32%  Similarity=0.541  Sum_probs=614.2

Q ss_pred             CCCC--cEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCC
Q 004972            1 MAAP--RVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG   77 (721)
Q Consensus         1 m~~~--~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~   77 (721)
                      |++.  ++.++..+++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.......
T Consensus         1 ~~~~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~   80 (715)
T PRK11730          1 MIYQGKTLQVDWLEDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAP   80 (715)
T ss_pred             CCcccceEEEEEcCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCC
Confidence            6554  57777436889999999995 79999999999999999999999999999999999999999999885421111


Q ss_pred             --cccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccC
Q 004972           78 --DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVG  152 (721)
Q Consensus        78 --~~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G  152 (721)
                        ....+.....+++ ..+.++||||||+|||+|+|||++|+|+||+||++++++|++||+++|++|+   +++|+|++|
T Consensus        81 ~~~~~~~~~~~~~~~-~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG  159 (715)
T PRK11730         81 EEELSQWLHFANSIF-NRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIG  159 (715)
T ss_pred             HHHHHHHHHHHHHHH-HHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcC
Confidence              1112222334455 6689999999999999999999999999999999999999999999999997   899999999


Q ss_pred             HHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCc----HHHHHHHHHHH
Q 004972          153 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSL----SEAREVLKLAR  228 (721)
Q Consensus       153 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  228 (721)
                      ..+|++|++||++++|+||+++||||+|||++++++++.++|++++..+..+...  +....++.    .+....++..+
T Consensus       160 ~~~A~~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~--~~~~~~p~a~~~~~~~~~~~~~k  237 (715)
T PRK11730        160 ADNALEWIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAIAGKLDWKAR--RQPKLEPLKLSKIEAMMSFTTAK  237 (715)
T ss_pred             HHHHHHHHHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHHHHHHhhcCCccccc--cCcccccccccchhHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999764222111  11111110    11122233333


Q ss_pred             HH-HHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCcee
Q 004972          229 LQ-AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRK  307 (721)
Q Consensus       229 ~~-~~~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~~~~~~~~~~~~~~k  307 (721)
                      +. .|+++++|||+..++++++.+...+++++++.|.+.|..++.|+|+++++++|+++|..++.+...  ...+++++|
T Consensus       238 ~~~~~~~~~~~pa~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~d~~egi~aF~~~~~~~~~~~~~--~~~~~~i~~  315 (715)
T PRK11730        238 GMVAQKAGKHYPAPMTAVKTIEAAAGLGRDEALELEAKGFVKLAKTNVARALVGIFLNDQYVKGKAKKL--AKDAKPVKQ  315 (715)
T ss_pred             HHHHHhhccCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCCC--CCCccccce
Confidence            32 367889999999999999999999999999999999999999999999999999999998765221  124467999


Q ss_pred             EEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCCCE
Q 004972          308 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDM  387 (721)
Q Consensus       308 I~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDl  387 (721)
                      |+|||+|+||.+||..++.+|++|+++|++++.++++.+++++.+++.+++|.+++.+.+..+++|+++++++.+++||+
T Consensus       316 v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDl  395 (715)
T PRK11730        316 AAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGFERVDV  395 (715)
T ss_pred             EEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988999999


Q ss_pred             EEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCCCHHHHH
Q 004972          388 VIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVIL  467 (721)
Q Consensus       388 VIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t~~e~~~  467 (721)
                      |||||||++++|+++|+++++++++++||+||||+++++++++.+.+|+||+|+|||||++.+++||||+++.|++++++
T Consensus       396 ViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~  475 (715)
T PRK11730        396 VVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIA  475 (715)
T ss_pred             EEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHH-HhcCCCccHHHHHHhhchHHHHHHHHH
Q 004972          468 DLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKE  546 (721)
Q Consensus       468 ~~~~l~~~lG~~~v~v~d~~gfi~nRl~~~~~~Ea~~l~~~Gv~~~~ID~a~-~~~G~p~Gpf~~~D~~Gld~~~~~~~~  546 (721)
                      .+..|++.+||.||+++|.||||+||++.++++|+++++++|+++++||+++ .++|||+|||+++|.+|||+++++.+.
T Consensus       476 ~~~~~~~~lgk~pv~v~d~pGfv~nRi~~~~~~ea~~lv~~Ga~~e~ID~a~~~~~G~~~GP~~~~D~~Gld~~~~~~~~  555 (715)
T PRK11730        476 TVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGADFRQIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAV  555 (715)
T ss_pred             HHHHHHHHhCCceEEecCcCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhCCCccCHHHHHHhhchHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999 789999999999999999999999999


Q ss_pred             HHHhCCCCCC--CcHHHHHHHHcCCCCcccCccccccCCCC----CCCCCCCchhHHHHHhhhccCCCCCCCcccChHHH
Q 004972          547 FDKAFPDRSF--QSPLVDLLLKSGRNGKANGKGLYTYEKGS----KPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEI  620 (721)
Q Consensus       547 l~~~~~~~~~--~~~~l~~~v~~G~~G~k~g~GfY~y~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  620 (721)
                      ++..++++..  +++++++|+++|++|+|+|+|||+|+++.    +...|+.+..++.....        ....+++++|
T Consensus       556 ~~~~~~~~~~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~i  627 (715)
T PRK11730        556 MAEGFPDRMKKDYRDAIDVLFEAKRFGQKNGKGFYRYEEDKKGKPKKEVDPAVYELLAPVVQ--------PKREFSDEEI  627 (715)
T ss_pred             HHHhcCCccccchhHHHHHHHHCCCCccccCCEeEecccCCCcccccCCCHHHHHHHHHhcc--------ccCCCCHHHH
Confidence            9998887643  56899999999999999999999997432    23455555555543221        1124678999


Q ss_pred             HHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCCCCCCCHHHHHH
Q 004972          621 VEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEER  700 (721)
Q Consensus       621 ~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~  700 (721)
                      .||++.+++|||++|++|||+.+|+|||.+|++|+|||+|++|||+++|.+|+|.+++.++.+. +++++|+|+++|++|
T Consensus       628 ~nRll~~~~~Ea~~ll~eGvva~~~dID~a~~~g~G~p~~~gGPf~~~D~~Gld~~~~~~~~~~-~~~~~~~p~~~L~~~  706 (715)
T PRK11730        628 IARMMIPMINEVVRCLEEGIVASPAEADMALVYGLGFPPFRGGAFRYLDTLGVANYVALADKYA-HLGPLYQVPEGLREM  706 (715)
T ss_pred             HHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHhCCCCCCCcCCHHHHHHHhCHHHHHHHHHHHH-HcCCCCCCCHHHHHH
Confidence            9999999999999999999866999999999999999999999999999999999999999875 588999999999999


Q ss_pred             HHcCCCCcC
Q 004972          701 ATKGIPLSA  709 (721)
Q Consensus       701 ~~~g~~f~~  709 (721)
                      +++|++||.
T Consensus       707 v~~~~~f~~  715 (715)
T PRK11730        707 AANGESYYP  715 (715)
T ss_pred             HHcCCCCCC
Confidence            999999973

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=100.00  E-value=3.1e-127  Score=1109.16  Aligned_cols=687  Identities=34%  Similarity=0.571  Sum_probs=605.3

Q ss_pred             EEEEEecCcEEEEEeCCC-C-CCCCCHHHHHHHHHHHHHHhcCCCceEEEE-EeCCCCCcCCCCchhhhhccCCCccccc
Q 004972            6 VTMEVGNDGVAIITLINP-P-VNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNGGRFSGGFDINVFQKVHGAGDVSLM   82 (721)
Q Consensus         6 v~~~~~~~~v~~i~l~~p-~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl-tg~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (721)
                      ++++..+++|++|||||| . .|++|.+|+++|.+++++++.|+++|+||| +|.|++||+|+|++++...........+
T Consensus         2 ~~~~~~~~~Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~   81 (699)
T TIGR02440         2 FTLTVREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKAL   81 (699)
T ss_pred             eEEEEcCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHH
Confidence            344554789999999999 3 699999999999999999999999999997 6788999999999998542111111122


Q ss_pred             chHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCC--ceEeCcccccCcccc---ccccccccCHHHHH
Q 004972           83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELTLGVIPG---TQRLPRLVGLSKAI  157 (721)
Q Consensus        83 ~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~--a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~  157 (721)
                      ....+.++ ..+.++||||||+|||+|+|||++|+|+||||||+++  ++|++||+++|++|+   +++|+|++|..+|+
T Consensus        82 ~~~~~~~~-~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~  160 (699)
T TIGR02440        82 AQQGQVLF-AELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTAL  160 (699)
T ss_pred             HHHHHHHH-HHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHH
Confidence            22334555 6699999999999999999999999999999999976  799999999999997   89999999999999


Q ss_pred             HHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHH-HHHHhCC
Q 004972          158 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARL-QAKKTAP  236 (721)
Q Consensus       158 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  236 (721)
                      +|+++|++++|+||+++||||+|+|++++++++.++|++. ..++... .........+.......+..+.+ ..+++++
T Consensus       161 ~llltG~~~~a~eA~~~GLV~~vv~~~~l~~~a~~~A~~~-~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~k~~~~~~~~  238 (699)
T TIGR02440       161 DMILTGKQLRAKQALKLGLVDDVVPQSILLDTAVEMALKG-KPIRKPL-SLQERLLEGTPLGRALLFDQAAKKTAKKTQG  238 (699)
T ss_pred             HHHHcCCcCCHHHHHhCCCCcEecChhHHHHHHHHHHHhC-CCCCCCc-cchhhhcccCchhHHHHHHHHHHHHHHhccc
Confidence            9999999999999999999999999999999999999741 0000000 00000000000111112222333 3457888


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCceeEEEEcCCCC
Q 004972          237 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLM  316 (721)
Q Consensus       237 ~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~~~~~~~~~~~~~~kI~VIG~G~m  316 (721)
                      +|||+..+|++++.+...+++++++.|.+.|..++.|+|+++++++|+.++..++.++. .  ..+.+++||+|||+|.|
T Consensus       239 ~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~~f~~~~~~~~~~~~-~--~~~~~i~~v~ViGaG~m  315 (699)
T TIGR02440       239 NYPAAERILDVVRQGLAQGMQKGLDAEARAFGELVMTPESAALRSIFFATTEMKKETGS-D--ATPAKIKKVGILGGGLM  315 (699)
T ss_pred             CChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCC-C--CCcccccEEEEECCcHH
Confidence            99999999999999999999999999999999999999999999999999999876552 2  23467899999999999


Q ss_pred             cHHHHHHHH-HCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCCCEEEEcccCC
Q 004972          317 GSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIES  395 (721)
Q Consensus       317 G~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVIeavpe~  395 (721)
                      |++||..++ ++|++|+++|++++.++++..++.+.+++.++++.+++.+.+..+.+|+++++++.+++||+|||||||+
T Consensus       316 G~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~adlViEav~E~  395 (699)
T TIGR02440       316 GGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRGFKDVDIVIEAVFED  395 (699)
T ss_pred             HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHHhccCCEEEEecccc
Confidence            999999998 5899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCCCHHHHHHHHHHHHH
Q 004972          396 VPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKI  475 (721)
Q Consensus       396 ~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t~~e~~~~~~~l~~~  475 (721)
                      +++|+++|+++++++++++||+||||+++++++++.+.+|+||+|+|||||++.+++|||++++.|++++++.+..|++.
T Consensus       396 l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~~T~~~~~~~~~~~~~~  475 (699)
T TIGR02440       396 LALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATTVALAKK  475 (699)
T ss_pred             HHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHHhhchHHHHHHHHHHHHhCCCCC
Q 004972          476 IKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRS  555 (721)
Q Consensus       476 lG~~~v~v~d~~gfi~nRl~~~~~~Ea~~l~~~Gv~~~~ID~a~~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~  555 (721)
                      +||.||+++|.|||++||++.++++||++++++|+++++||++++++|||+|||+++|.+|+|+++++++.+++.+++++
T Consensus       476 ~gk~pv~v~d~pGfi~nRl~~~~~~Ea~~l~~~G~~~~dID~a~~~~G~p~GPf~l~D~vGld~~~~i~~~l~~~~~~~~  555 (699)
T TIGR02440       476 QGKTPIVVADKAGFYVNRILAPYMNEAARLLLEGEPVEHIDKALVKFGFPVGPITLLDEVGIDVGAKISPILEAELGERF  555 (699)
T ss_pred             cCCeEEEEccccchHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCCCcCHHHHHHHhchHHHHHHHHHHHHhcCCCC
Confidence            99999999999999999999999999999999999999999999889999999999999999999999999999999987


Q ss_pred             CCcHHHHHHHHcCCCCcccCccccccCCCC-CCCCCCCchhHHHHHhhhccCCCCCCCcccChHHHHHHHHHHHHHHHHH
Q 004972          556 FQSPLVDLLLKSGRNGKANGKGLYTYEKGS-KPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCR  634 (721)
Q Consensus       556 ~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~ea~~  634 (721)
                      .|++++++|+++|++|+|||+|||+|++++ ++..++.+..++.       ..+   ...++++++.||++++++|||++
T Consensus       556 ~~~~~l~~~v~~G~lG~ksg~GfY~y~~~~~~~~~~~~~~~~~~-------~~~---~~~~~~g~v~~Rll~~~~~Ea~~  625 (699)
T TIGR02440       556 KAPAVFDKLLSDDRKGRKNGKGFYLYGAATKKKAVDESVYGLLG-------IKP---GVDKEASAVAERCVMLMLNEAVR  625 (699)
T ss_pred             CCcHHHHHHHHCCCCcccCCcEEEeCCCCCCcCCCCHHHHHHhC-------cCC---CCCCCHHHHHHHHHHHHHHHHHH
Confidence            789999999999999999999999997643 3455555544431       111   12477899999999999999999


Q ss_pred             HhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHcCCCCc
Q 004972          635 VLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLS  708 (721)
Q Consensus       635 ~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~f~  708 (721)
                      |++|||+.+|+|||.+|++|+|||+|++|||+++|.+|++.+++.++.+++.+|++|+|+++|++|+++|++||
T Consensus       626 ll~eGvva~~~dID~~~~~g~G~p~~~~Gpf~~~D~~Gld~~~~~~~~l~~~~g~~~~p~~~L~~~~~~~~~f~  699 (699)
T TIGR02440       626 CLDEGVIRSPRDGDIGAIFGIGFPPFLGGPFRYIDTLGADNVVKILERLQTQYGDRFTPCQRLVAMAAEKQSFY  699 (699)
T ss_pred             HHHCCCcCCHHHHHHHHHhcCCCCCCcCCHHHHHHHhCHHHHHHHHHHHHHHcCCCcCCCHHHHHHHHcCCCcC
Confidence            99999966999999999999999999999999999999999999999999999999999999999999999997

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=1e-126  Score=1107.84  Aligned_cols=688  Identities=35%  Similarity=0.573  Sum_probs=609.1

Q ss_pred             CcEEEEEecCcEEEEEeCCC--CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcCCCCchhhhhccCCCccc
Q 004972            4 PRVTMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVS   80 (721)
Q Consensus         4 ~~v~~~~~~~~v~~i~l~~p--~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~   80 (721)
                      .+++++.++++|++||||||  +.|++|.+|+++|.+++++++.|+++|+|||+|.+ ++||+|+|++++..........
T Consensus         5 ~~~~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~   84 (708)
T PRK11154          5 SAFTLNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAE   84 (708)
T ss_pred             ceEEEEEcCCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHH
Confidence            35777775689999999999  57999999999999999999999999999999864 7999999999885422111111


Q ss_pred             ccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCC--ceEeCcccccCcccc---ccccccccCHHH
Q 004972           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELTLGVIPG---TQRLPRLVGLSK  155 (721)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~--a~~~~pe~~~Gl~P~---~~~l~r~~G~~~  155 (721)
                      .+....++++ ++|.++||||||+|||+|+|||++|+++|||||++++  ++|++||+++|++|+   +++|+|++|..+
T Consensus        85 ~~~~~~~~~~-~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~~  163 (708)
T PRK11154         85 ALARQGQQLF-AEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVST  163 (708)
T ss_pred             HHHHHHHHHH-HHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCHHH
Confidence            2223334455 6799999999999999999999999999999999986  589999999999997   899999999999


Q ss_pred             HHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCC--CcHHHHHHHHHHHHH-HH
Q 004972          156 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLG--SLSEAREVLKLARLQ-AK  232 (721)
Q Consensus       156 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~  232 (721)
                      |++|+++|++++|+||+++||||+++|++++.+++.++|+++....+ ...   ...++.  +.......+..++.+ .+
T Consensus       164 A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~A~~~~~~~~-~~~---~~~~~~~~~p~~~~~~~~~~~~~~~~  239 (708)
T PRK11154        164 ALDMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKKGKPARR-PLP---VRERLLEGNPLGRALLFKQARKKTLA  239 (708)
T ss_pred             HHHHHHhCCcCCHHHHHHCCCCcEecChHHHHHHHHHHHHhcCCccC-cCC---chhhhcccCchhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999988421110 000   000000  011112233334443 45


Q ss_pred             HhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCceeEEEEc
Q 004972          233 KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIG  312 (721)
Q Consensus       233 ~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~~~~~~~~~~~~~~kI~VIG  312 (721)
                      +++++|||+..+|++++.+...+++++++.|.+.|..++.|+|+++++++|+.++..++.+.. .  ..+++++||+|||
T Consensus       240 ~~~g~~~A~~~~k~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~aF~~~~~~~~~~~~-~--~~~~~i~~v~ViG  316 (708)
T PRK11154        240 KTQGNYPAPERILDVVRTGLEKGMSSGYEAEARAFGELAMTPESAALRSIFFATTEMKKDTGS-D--AKPRPVNKVGVLG  316 (708)
T ss_pred             hcccCChHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCC-C--CCCCcccEEEEEC
Confidence            788899999999999999999999999999999999999999999999999999998876542 2  2346799999999


Q ss_pred             CCCCcHHHHHHHH-HCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCCCEEEEc
Q 004972          313 GGLMGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEA  391 (721)
Q Consensus       313 ~G~mG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVIea  391 (721)
                      +|.||++||..++ .+|++|+++|++++.++++..++++.+++++++|.+++.+.+..+++|+++++++++++||+||||
T Consensus       317 aG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEa  396 (708)
T PRK11154        317 GGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRGFKHADVVIEA  396 (708)
T ss_pred             CchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHHhccCCEEeec
Confidence            9999999999999 889999999999999999999999999999999999999999999999999999889999999999


Q ss_pred             ccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCCCHHHHHHHHH
Q 004972          392 VIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMT  471 (721)
Q Consensus       392 vpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t~~e~~~~~~~  471 (721)
                      |||++++|+++|+++++++++++||+||||+++++++++.+.+|+||+|+|||||++.+++|||++++.|++++++.+..
T Consensus       397 v~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~  476 (708)
T PRK11154        397 VFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVA  476 (708)
T ss_pred             ccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEECCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHHhhchHHHHHHHHHHHHhC
Q 004972          472 VGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAF  551 (721)
Q Consensus       472 l~~~lG~~~v~v~d~~gfi~nRl~~~~~~Ea~~l~~~Gv~~~~ID~a~~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~  551 (721)
                      |++.+||.|++++|.||||+||++.+++||+++++++|+++++||.++.++|||+|||+++|.+|+|++.++++.+++.+
T Consensus       477 ~~~~~gk~pv~v~d~pGfi~nRl~~~~~~EA~~lv~eGv~~~dID~a~~~~G~p~GPf~~~D~~Gld~~~~i~~~l~~~~  556 (708)
T PRK11154        477 LAKKQGKTPIVVRDGAGFYVNRILAPYINEAARLLLEGEPIEHIDAALVKFGFPVGPITLLDEVGIDVGTKIIPILEAAL  556 (708)
T ss_pred             HHHHcCCceEEEeccCcHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCHHHHHHHhhhHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999988999999999999999999999999999999


Q ss_pred             CCCCCCcHHHHHHHHcCCCCcccCccccccCCCCC---CCCCCCchhHHHHHhhhccCCCCCCCcccChHHHHHHHHHHH
Q 004972          552 PDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSK---PKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPV  628 (721)
Q Consensus       552 ~~~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~  628 (721)
                      ++++.|++++++|+++|++|+|+|+|||+|+++++   +..++.+...+.       ..+   ...+++++|.||+++++
T Consensus       557 ~~~~~~~~~l~~~v~~g~~G~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~-------~~~---~~~~~~g~i~~Rll~~~  626 (708)
T PRK11154        557 GERFSAPAAFDKLLNDDRKGRKNGRGFYLYGQKGKKSKKQVDESVYPLLG-------ITP---QSRLSANEIAERCVMLM  626 (708)
T ss_pred             CCCCCCCHHHHHHHHCCCCcccCCceEEECCCCcccccccCCHHHHHHhc-------cCC---CCCCCHHHHHHHHHHHH
Confidence            88777889999999999999999999999975322   344544443331       111   12588999999999999


Q ss_pred             HHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHcCCCCc
Q 004972          629 VNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLS  708 (721)
Q Consensus       629 ~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~f~  708 (721)
                      +|||++|++|||+.+++|||.+|++|+|||+|+||||+++|.+|++.+++.++.+++.++++|+|+++|++|+++|++||
T Consensus       627 ~nEa~~ll~eGvva~~~dID~~~~~G~G~p~~~gGp~~~~D~~Gld~~~~~~~~l~~~~~~~~~p~~~l~~~~~~~~~f~  706 (708)
T PRK11154        627 LNEAVRCLDEGIIRSARDGDIGAVFGIGFPPFLGGPFRYMDSLGAGEVVAILERLAAQYGDRFTPCERLVEMAERGESFY  706 (708)
T ss_pred             HHHHHHHHHCCCcCCHHHHHHHHHhcCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHhcCCccCCCHHHHHHHHcCCCCC
Confidence            99999999999966999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             C
Q 004972          709 A  709 (721)
Q Consensus       709 ~  709 (721)
                      .
T Consensus       707 ~  707 (708)
T PRK11154        707 P  707 (708)
T ss_pred             C
Confidence            4

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=100.00  E-value=1.2e-74  Score=644.04  Aligned_cols=402  Identities=32%  Similarity=0.513  Sum_probs=358.8

Q ss_pred             CceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972          304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  383 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  383 (721)
                      +++||+|||+|.||++||..++++|++|++||++++.++++.+++++.++.++++|.+++++.+..+++++.++++++++
T Consensus         4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l~   83 (503)
T TIGR02279         4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHALA   83 (503)
T ss_pred             CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHhC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999998889


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCCCH
Q 004972          384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA  463 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t~~  463 (721)
                      +||+|||||||+.++|+.+|++++.++++++||+||||+++++++++.+.+|+|++|+|||+|++.++++|+++++.|++
T Consensus        84 ~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~~LvEvv~g~~Ts~  163 (503)
T TIGR02279        84 DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVMALVEVVSGLATAA  163 (503)
T ss_pred             CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccCceEEEeCCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCCccHHHHHHhhchHHHH
Q 004972          464 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA  541 (721)
Q Consensus       464 e~~~~~~~l~~~lG~~~v~v~d~~gfi~nRl~~~~~~Ea~~l~~~G-v~~~~ID~a~-~~~G~p~Gpf~~~D~~Gld~~~  541 (721)
                      ++++++.++++.+||.|++++|.|||++||++.++++||++++++| ++|++||+++ .++|||||||+++|++|||+++
T Consensus       164 e~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrl~~~~~~EA~~l~e~g~a~~~~ID~al~~~~G~~mGPf~l~D~~Gldv~~  243 (503)
T TIGR02279       164 EVAEQLYETALAWGKQPVHCHSTPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALRDGAGFPMGPFELTDLIGHDVNF  243 (503)
T ss_pred             HHHHHHHHHHHHcCCeeeEeCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhhhHHHH
Confidence            9999999999999999999999999999999999999999999997 5999999999 7899999999999999999999


Q ss_pred             HHHHHHHHhC-CCCCC-CcHHHHHHHHcCCCCcccCccccccCCCCCCCCC-----------------------------
Q 004972          542 ATSKEFDKAF-PDRSF-QSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPD-----------------------------  590 (721)
Q Consensus       542 ~~~~~l~~~~-~~~~~-~~~~l~~~v~~G~~G~k~g~GfY~y~~~~~~~~~-----------------------------  590 (721)
                      ++.+++++.+ +++.+ |++++++|+++|++|+|||+|||+|+++......                             
T Consensus       244 ~v~~~~~~~~~~~~~~~p~~~~~~~v~~G~lG~KtG~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (503)
T TIGR02279       244 AVTCSVFNAFWQDRRFLPSLVQQELVIAGRLGRKSGLGVYDYREEAEAVVPLEAVSDSFSPRVTVVGDIGAAAPLLARLE  323 (503)
T ss_pred             HHHHHHHHHhcCCCCCCCcHHHHHHHHCCCCccccCCEeeeCCCCCCCCCCccccccccccceeecccccchhhHHHHHH
Confidence            9999998874 55444 7899999999999999999999999764321111                             


Q ss_pred             -----------------------------------------CCchhHHHHHhhhcc--CCCCC-----------------
Q 004972          591 -----------------------------------------PSVLPIIEECRRLSN--IMPGG-----------------  610 (721)
Q Consensus       591 -----------------------------------------~~~~~~~~~~~~~~~--~~~~~-----------------  610 (721)
                                                               +.+..++...+....  +.+..                 
T Consensus       324 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~vEv~~~~~Ts~e~~~~a~~~~~~~  403 (503)
T TIGR02279       324 AAGIKVEKKSGRGVTQIGDALLALTDGRTAQARAIELARPNLVLFDLVLDYSTGKRIAIAAAAVNPDSATRKAIYYLQQA  403 (503)
T ss_pred             hccccccccccccccccchhhhhhccccchhhhhhhcCCCCchHHHHHhhhcccCeEEEeCCCCCCHHHHHHHHHHHHHc
Confidence                                                     000000000000000  01110                 


Q ss_pred             --CCccc--ChHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHh
Q 004972          611 --KPISV--TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQL  686 (721)
Q Consensus       611 --~~~~~--~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~  686 (721)
                        .+..+  ++++|+||++++++|||++++++||+ +++|||.+|++|+|||.   |||+++|.+|+|.++++++.+++.
T Consensus       404 Gk~pi~v~D~pGfi~nRil~~~~nEA~~ll~eGva-s~~dID~a~~~g~G~P~---GP~~~~D~~Gld~~~~~l~~l~~~  479 (503)
T TIGR02279       404 GKKVLQIADYPGLLILRTVAMLANEAADAVLQGVA-SAQDIDTAMRLGVNYPY---GPLAWAAQLGWQRILRVLENLQHH  479 (503)
T ss_pred             CCeEEEeCCcccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhCCCCCc---CHHHHHHHhCHHHHHHHHHHHHHH
Confidence              00112  35899999999999999999999999 99999999999999999   999999999999999999999999


Q ss_pred             hC-CCCCCCHHHHHHHHcCCCCcC
Q 004972          687 YG-NFFKPSRFLEERATKGIPLSA  709 (721)
Q Consensus       687 ~~-~~~~p~~~l~~~~~~g~~f~~  709 (721)
                      ++ ++|+|+++|++|+++|.+|.+
T Consensus       480 ~~~~~~~p~~~L~~~v~~g~~~~~  503 (503)
T TIGR02279       480 YGEERYRPSSLLRRRALLGSGYED  503 (503)
T ss_pred             cCCCcCCcCHHHHHHHHcCCCcCC
Confidence            98 499999999999999999853

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=100.00  E-value=2.7e-73  Score=635.60  Aligned_cols=404  Identities=32%  Similarity=0.550  Sum_probs=361.7

Q ss_pred             CCCceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccc
Q 004972          302 PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  381 (721)
Q Consensus       302 ~~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  381 (721)
                      .++++||+|||+|.||.+||..++++|++|++||++++.++++.+++++.+++++++|.++.++.+..+++++++++++.
T Consensus         4 ~~~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~   83 (507)
T PRK08268          4 LPSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD   83 (507)
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH
Confidence            34689999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCC
Q 004972          382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT  461 (721)
Q Consensus       382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t  461 (721)
                      +++||+|||||||+.++|+.+|++++..+++++||+||||++++++++..+.+|+|++|+|||+|++.++++|+++++.|
T Consensus        84 ~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~~~p~r~~G~hff~Pa~v~~LvEvv~g~~T  163 (507)
T PRK08268         84 LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLAT  163 (507)
T ss_pred             hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEeecCCcccCeeEEEeCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCCccHHHHHHhhchHH
Q 004972          462 SAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLPIGPFQLLDLAGYGV  539 (721)
Q Consensus       462 ~~e~~~~~~~l~~~lG~~~v~v~d~~gfi~nRl~~~~~~Ea~~l~~~G-v~~~~ID~a~-~~~G~p~Gpf~~~D~~Gld~  539 (721)
                      ++++++++.++++.+||.|++++|.|||++||++.++++|+++++++| +++++||+++ .++|||||||+++|.+|+|+
T Consensus       164 s~~~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrll~~~~~Ea~~l~~~g~~~~~~iD~al~~~~G~~mGPf~l~D~~Gldv  243 (507)
T PRK08268        164 DPAVADALYALARAWGKTPVRAKDTPGFIVNRAARPYYTEALRVLEEGVADPATIDAILREAAGFRMGPFELMDLIGLDV  243 (507)
T ss_pred             CHHHHHHHHHHHHHcCCceEEecCCCChHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhchHH
Confidence            999999999999999999999999999999999999999999999997 5999999999 78999999999999999999


Q ss_pred             HHHHHHHHHHhC-CC-CCCCcHHHHHHHHcCCCCcccCccccccCCCCC-CCCCCCc--------------------hhH
Q 004972          540 AAATSKEFDKAF-PD-RSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSK-PKPDPSV--------------------LPI  596 (721)
Q Consensus       540 ~~~~~~~l~~~~-~~-~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~~-~~~~~~~--------------------~~~  596 (721)
                      .+++.+.+...+ ++ ++.+++++++|+++|++|+|+|+|||+|+++++ +.++++.                    ..+
T Consensus       244 ~~~v~~~~~~~~~~~~~~~~~~~~~~lv~~g~lG~ksG~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (507)
T PRK08268        244 NHAVMESVYRQFYQEPRFRPSLIQQELVAAGRLGRKSGQGFYRYADGAKQPPAEAAPPAALPPVWVSADVEGDLAALARL  323 (507)
T ss_pred             HHHHHHHHHHHhcCCCcCCccHHHHHHHHCCCCccccCCeeeECCCCCCCCCCCccccccCccccccccccchhHHHHHH
Confidence            999999988764 44 444789999999999999999999999975432 2222221                    111


Q ss_pred             HHH----------------------------Hhhhcc-----------CCC--CCCCccc--------------------
Q 004972          597 IEE----------------------------CRRLSN-----------IMP--GGKPISV--------------------  615 (721)
Q Consensus       597 ~~~----------------------------~~~~~~-----------~~~--~~~~~~~--------------------  615 (721)
                      +..                            ......           +.|  ..+..++                    
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~Ts~e~~~~~~~~~~~  403 (507)
T PRK08268        324 LERLGATIETGEGPSADGLVLLAPTGGDTTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPATSPAARDAAHALFQQ  403 (507)
T ss_pred             HHhhccccccccccccccceEeeccCcchHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence            100                            000000           000  0011112                    


Q ss_pred             ----------ChHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHH
Q 004972          616 ----------TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQ  685 (721)
Q Consensus       616 ----------~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~  685 (721)
                                ++++|.||++++++|||++|++|||+ +++|||.+|++|+|||+   |||+++|.+|++.++++++.+++
T Consensus       404 ~gk~pi~v~d~~Gfi~nRll~~~~nEa~~ll~eGva-s~~dID~a~~~g~G~p~---GP~~~~D~~Gld~~~~~~~~l~~  479 (507)
T PRK08268        404 DGKAVSVIRDSPGFVAQRTVAMIVNEAADIAQQGIA-SPADIDLAMRLGLNYPL---GPLAWGDRLGAARILRVLENLQA  479 (507)
T ss_pred             cCCeeEEeCCCccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhcCCCCc---CHHHHHHHhCHHHHHHHHHHHHH
Confidence                      68999999999999999999999998 99999999999999999   99999999999999999999999


Q ss_pred             hhCC-CCCCCHHHHHHHHcCCCCcC
Q 004972          686 LYGN-FFKPSRFLEERATKGIPLSA  709 (721)
Q Consensus       686 ~~~~-~~~p~~~l~~~~~~g~~f~~  709 (721)
                      .+|+ +|+|+++|++|+++|+.||.
T Consensus       480 ~~g~~~~~p~~ll~~~v~~G~~~~~  504 (507)
T PRK08268        480 LYGDPRYRPSPWLRRRAALGLSLRS  504 (507)
T ss_pred             HhCCCcCCcCHHHHHHHHcCCCcCC
Confidence            9995 99999999999999999976

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=100.00  E-value=2.1e-65  Score=525.61  Aligned_cols=280  Identities=40%  Similarity=0.682  Sum_probs=270.9

Q ss_pred             CceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972          304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  383 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  383 (721)
                      .++||+|||+|.||++||..++..|++|+++|++++.++++...+++.+++++++|++++.+.+..+++|+.++++.+++
T Consensus         2 ~i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l~   81 (307)
T COG1250           2 EIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAALK   81 (307)
T ss_pred             CccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhHhc
Confidence            57899999999999999999999889999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCCCH
Q 004972          384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA  463 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t~~  463 (721)
                      +||+|||+|+||+++|+++|++++.++++++||+||||+++++++++.+.+|+||+|+|||||++.|++|||+++..|++
T Consensus        82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfNP~~~m~LVEvI~g~~T~~  161 (307)
T COG1250          82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSD  161 (307)
T ss_pred             cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEeccCCCCcceeEEEecCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHH
Q 004972          464 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA  541 (721)
Q Consensus       464 e~~~~~~~l~~~lG~~~v~v~d~~gfi~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~G~p~Gpf~~~D~~Gld~~~  541 (721)
                      ++++++.+|.+.+||.|++++|.||||+||++.++++||++++++|+ +|++||+++ .++|||||||+++|++|+|+.+
T Consensus       162 e~~~~~~~~~~~igK~~vv~~D~pGFi~NRil~~~~~eA~~l~~eGva~~e~ID~~~~~~~G~pmGpf~l~D~~GlD~~~  241 (307)
T COG1250         162 ETVERVVEFAKKIGKTPVVVKDVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQGLGLPMGPFELADLIGLDVML  241 (307)
T ss_pred             HHHHHHHHHHHHcCCCCEeecCCCceehHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCCccHHHHHHHHhHHHHH
Confidence            99999999999999999888999999999999999999999999995 999999999 7899999999999999999999


Q ss_pred             HHHHHHHHhCCCC-CC-CcHHHHHHHHcCCCCcccCccccccCC
Q 004972          542 ATSKEFDKAFPDR-SF-QSPLVDLLLKSGRNGKANGKGLYTYEK  583 (721)
Q Consensus       542 ~~~~~l~~~~~~~-~~-~~~~l~~~v~~G~~G~k~g~GfY~y~~  583 (721)
                      ++++.+++.++++ .+ |++++++|++.|++|+|||+|||+|++
T Consensus       242 ~i~~~~~~~~~~~~~~~~~~~~~~~v~~g~lG~Ksg~GfY~y~~  285 (307)
T COG1250         242 HIMKVLNETLGDDPYYRPPPLLRKLVEAGRLGRKSGKGFYDYRG  285 (307)
T ss_pred             HHHHHHHHhcCCCccccccHHHHHHHhcccccccCCCcceeccc
Confidence            9999999888843 34 789999999999999999999999975

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=100.00  E-value=4.7e-63  Score=466.23  Aligned_cols=280  Identities=33%  Similarity=0.589  Sum_probs=265.5

Q ss_pred             CCceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHH-----HHHhhcCceecc
Q 004972          303 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDK-----ANNALKMLKGVL  377 (721)
Q Consensus       303 ~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~i~~~~  377 (721)
                      ..++.|+|||+|.||++||+..+..|++|+++|.+++.+.++.+.|.+.+.+..+++..+...     .+..+++|..++
T Consensus         9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~t   88 (298)
T KOG2304|consen    9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTST   88 (298)
T ss_pred             ccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcC
Confidence            357889999999999999999999999999999999999999999999999998888776444     366778999999


Q ss_pred             Cc-cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEe
Q 004972          378 DY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV  456 (721)
Q Consensus       378 ~~-~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv  456 (721)
                      +. +.++++|+||||+.|+.++|+.+|++|+..+++++|++||||++.+++++..+.+|.||.|+|||||+.+|++||||
T Consensus        89 nv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~~~~~~srf~GlHFfNPvPvMKLvEVi  168 (298)
T KOG2304|consen   89 NVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIASATQRPSRFAGLHFFNPVPVMKLVEVI  168 (298)
T ss_pred             CHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHhhccChhhhceeeccCCchhHHHhhhh
Confidence            98 66899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHh
Q 004972          457 RTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDL  534 (721)
Q Consensus       457 ~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~gfi~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~G~p~Gpf~~~D~  534 (721)
                      .++.|++++++.+..|.+.+||++|-++|.||||+||++.+|++||+++++.|. +.+|||.+| .|.|+|||||+++|.
T Consensus       169 r~~~TS~eTf~~l~~f~k~~gKttVackDtpGFIVNRlLiPyl~ea~r~yerGdAskeDIDtaMklGagyPMGPfEL~Dy  248 (298)
T KOG2304|consen  169 RTDDTSDETFNALVDFGKAVGKTTVACKDTPGFIVNRLLIPYLMEAIRMYERGDASKEDIDTAMKLGAGYPMGPFELADY  248 (298)
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCceeecCCCchhhhHHHHHHHHHHHHHHHhcCCcHhhHHHHHhccCCCCCChHHHHHH
Confidence            999999999999999999999999999999999999999999999999999997 999999999 999999999999999


Q ss_pred             hchHHHHHHHHHHHHhCCCC-CC-CcHHHHHHHHcCCCCcccCccccccC
Q 004972          535 AGYGVAAATSKEFDKAFPDR-SF-QSPLVDLLLKSGRNGKANGKGLYTYE  582 (721)
Q Consensus       535 ~Gld~~~~~~~~l~~~~~~~-~~-~~~~l~~~v~~G~~G~k~g~GfY~y~  582 (721)
                      +|||++..+++.+++.+++. .| |+|++.++|++|++|+|+|.|||+|.
T Consensus       249 vGLDt~kfvmdgwhe~~pe~~~f~psPll~klVaegklGrKtg~GfY~Yk  298 (298)
T KOG2304|consen  249 VGLDTCKFVMDGWHEGYPEDSLFAPSPLLDKLVAEGKLGRKTGEGFYKYK  298 (298)
T ss_pred             hhHHHHHHHHHHHHhcCCcccccCCChHHHHHHhccccccccCccceecC
Confidence            99999999999999998653 33 99999999999999999999999993

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=2.1e-59  Score=489.48  Aligned_cols=280  Identities=34%  Similarity=0.549  Sum_probs=270.5

Q ss_pred             CCCceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccc
Q 004972          302 PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  381 (721)
Q Consensus       302 ~~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  381 (721)
                      .++++||+|||+|.||.+||..++.+|++|++||++++.++++.+++++.+++++++|.+++.+.+..+++++++++++.
T Consensus         2 ~~~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~   81 (286)
T PRK07819          2 SDAIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD   81 (286)
T ss_pred             CCCccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhC-CCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCC
Q 004972          382 FKDVDMVIEAVIESVPLKQKIFSELEKAC-PPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTER  460 (721)
Q Consensus       382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~-~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~  460 (721)
                      +++||+|||||||+.++|+++|+++++.+ ++++||+||||++++++++..+.+|+|++|+|||+|++.++++||+++..
T Consensus        82 ~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvElv~~~~  161 (286)
T PRK07819         82 FADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLV  161 (286)
T ss_pred             hCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEEeCCCC
Confidence            99999999999999999999999999999 89999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHH-HcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhch
Q 004972          461 TSAQVILDLMTVGK-IIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGY  537 (721)
Q Consensus       461 t~~e~~~~~~~l~~-~lG~~~v~v~d~~gfi~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~G~p~Gpf~~~D~~Gl  537 (721)
                      |++++++++.+|+. .+||.|++++|.|||++||++.+++||+++|+++|+ +|+|||+++ .++|||+|||+++|.+|+
T Consensus       162 T~~~~~~~~~~~~~~~lgk~pv~v~d~pGfi~nRi~~~~~~Ea~~ll~eGv~~~~dID~~~~~g~G~p~Gpf~~~D~~Gl  241 (286)
T PRK07819        162 TSEATVARAEEFASDVLGKQVVRAQDRSGFVVNALLVPYLLSAIRMVESGFATAEDIDKAMVLGCAHPMGPLRLSDLVGL  241 (286)
T ss_pred             CCHHHHHHHHHHHHHhCCCCceEecCCCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhcc
Confidence            99999999999988 599999999999999999999999999999999997 999999999 899999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCC-CCcHHHHHHHHcCCCCcccCcccccc
Q 004972          538 GVAAATSKEFDKAFPDRS-FQSPLVDLLLKSGRNGKANGKGLYTY  581 (721)
Q Consensus       538 d~~~~~~~~l~~~~~~~~-~~~~~l~~~v~~G~~G~k~g~GfY~y  581 (721)
                      |++.++++.+++.+++++ .|++++++|+++|++|+|+|+|||+|
T Consensus       242 d~~~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~k~g~GfY~y  286 (286)
T PRK07819        242 DTVKAIADSMYEEFKEPLYAPPPLLLRMVEAGLLGKKSGRGFYTY  286 (286)
T ss_pred             HHHHHHHHHHHHHcCCCCCCCCHHHHHHHHCCCCcccCCCEeccC
Confidence            999999999999998755 48899999999999999999999998

>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=100.00  E-value=4.2e-61  Score=488.35  Aligned_cols=378  Identities=38%  Similarity=0.630  Sum_probs=348.1

Q ss_pred             CcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCCCEEEEcccCC
Q 004972          316 MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIES  395 (721)
Q Consensus       316 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVIeavpe~  395 (721)
                      ||++||..+..+|++|+++|.+...++++...+...+...+.+++++..+.......+..+.|++.+++||+|||+|.||
T Consensus         1 MG~gia~~~~~~~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~~~~~dmvieav~ed   80 (380)
T KOG1683|consen    1 MGAGIAIVFILAGIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTGFANADMVIEAVFED   80 (380)
T ss_pred             CcchHHHHHHHcCCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhcccccccccccccceeccchhhh
Confidence            89999999999999999999999999999999999999999999999988888888999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCCCHHHHHHHHHHHHH
Q 004972          396 VPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKI  475 (721)
Q Consensus       396 ~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t~~e~~~~~~~l~~~  475 (721)
                      +++|++++.+|++++++++|+.+|||+++++++++.+..|++++|+|||+|.+.++++||+.+.+|+.+++..+......
T Consensus        81 l~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~~~tS~~~iA~Ain~~~~  160 (380)
T KOG1683|consen   81 LELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILALYTSKLTIATAINGGSP  160 (380)
T ss_pred             HHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHhcCCCchHHHHHHhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHc-CCCHHHHHHHHHhcCCCccHHHHHHhhchHHHHHHHHHHHHhCCCC
Q 004972          476 IKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSL-GVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR  554 (721)
Q Consensus       476 lG~~~v~v~d~~gfi~nRl~~~~~~Ea~~l~~~-Gv~~~~ID~a~~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~  554 (721)
                      .|+.|++|++++||.+||++.+|.+++.++..+ |++|.++|+....||||+||+++.|..|+|+..++...+...++++
T Consensus       161 ~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d~~gfdv~eal~~gl~~~~~~r  240 (380)
T KOG1683|consen  161 AGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGERALADGVGFDVAEALAVGLGDEIGPR  240 (380)
T ss_pred             cCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhhccCccHHHHHhhccchhccch
Confidence            999999999999999999999999999999988 9999999999999999999999999999998887776665554443


Q ss_pred             CCCcHHHHHHHHcCCCCcccCccccccCCCCCCCCCC-CchhHHHHHhhhccCCCCCCCcccChHHHHHHHHHHHHHHHH
Q 004972          555 SFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDP-SVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESC  633 (721)
Q Consensus       555 ~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~ea~  633 (721)
                           +.++|++.|+.|+|||+|||.|+++.++..++ +..+.+...+      ........+++++++|++++.+|||+
T Consensus       241 -----~~eel~~~~~~g~kT~kg~y~y~~~l~k~~~~~~~~~~~r~l~------~~~~~r~~~~ed~v~~~~~p~VnEal  309 (380)
T KOG1683|consen  241 -----IEEELLEKGRAGIKTGKGIYPYARGLTKKMKRDEMEALLRRLS------LTPNPRVADDEDFVEFLLSPFVNEAL  309 (380)
T ss_pred             -----hHHHHHHHHhhhhhccCcccccccccccCCChhhHHHHHHHhc------cCCCcccCCHHHHHHHHhhHHHHHHH
Confidence                 78999999999999999999998875544444 3333333322      11223457899999999999999999


Q ss_pred             HHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHcCCCCcC
Q 004972          634 RVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSA  709 (721)
Q Consensus       634 ~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~f~~  709 (721)
                      +|++|||..+++++|.+.++|+|||+++||||.|+|..|++++++.|+.|+.     |+||.+|++++++|+-||.
T Consensus       310 ~~l~EGi~~~~~~~Di~~v~G~gfp~~~GGp~~~~d~~G~~ki~~~l~~~~~-----f~P~~~l~~~a~~~~~~~~  380 (380)
T KOG1683|consen  310 RCLLEGLKASPSDGDIASVFGLGFPPFRGGPMRFVDLYGADKIVSRLQKWSS-----FEPCQLLKDHAKSGKKFYN  380 (380)
T ss_pred             HHHHHHHhcCccccceeeeeccCCCCcCCCceeeeeccChHHHHHHHHHHhc-----CCHHHHHHHHHhhhccccC
Confidence            9999999999999999999999999999999999999999999999999975     9999999999999999984

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=2.5e-55  Score=461.49  Aligned_cols=279  Identities=29%  Similarity=0.444  Sum_probs=264.8

Q ss_pred             CceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHH-HHHhhcCceeccCcc-c
Q 004972          304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDK-ANNALKMLKGVLDYS-E  381 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~i~~~~~~~-~  381 (721)
                      +++||+|||+|.||++||..++.+|++|++||++++.++++.+.+++.++...+.+.++..+ .+....+++.+++++ .
T Consensus         2 ~~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a   81 (287)
T PRK08293          2 DIKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEA   81 (287)
T ss_pred             CccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHH
Confidence            46899999999999999999999999999999999999999998888888888888888776 666778999999984 6


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCC
Q 004972          382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT  461 (721)
Q Consensus       382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t  461 (721)
                      +++||+||+|+||+.+.|+++++++.+.+++++||++|+|+++++++++.+.+|+||+|+|||+|++.++++||++++.|
T Consensus        82 ~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~~p~~~~~lvevv~~~~t  161 (287)
T PRK08293         82 VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFANEIWKNNTAEIMGHPGT  161 (287)
T ss_pred             hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCCCCCCcCCeEEEeCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCeeEEE-cCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchH
Q 004972          462 SAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYG  538 (721)
Q Consensus       462 ~~e~~~~~~~l~~~lG~~~v~v-~d~~gfi~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~G~p~Gpf~~~D~~Gld  538 (721)
                      ++++++.+.++++.+|+.|+++ +|.|||++||++.++++||++++++|+ +|+|||+++ .++|+|+|||+++|.+|||
T Consensus       162 ~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~~~~~~ea~~l~~~g~a~~~~iD~a~~~~~g~~~Gp~~~~D~~Gld  241 (287)
T PRK08293        162 DPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLVPFLSAALALWAKGVADPETIDKTWMIATGAPMGPFGILDIVGLD  241 (287)
T ss_pred             CHHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCcCHHHHHHHhchH
Confidence            9999999999999999999999 699999999999999999999999997 999999999 8999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCC--CcHHHHHHHHcCCCCcccCccccccC
Q 004972          539 VAAATSKEFDKAFPDRSF--QSPLVDLLLKSGRNGKANGKGLYTYE  582 (721)
Q Consensus       539 ~~~~~~~~l~~~~~~~~~--~~~~l~~~v~~G~~G~k~g~GfY~y~  582 (721)
                      ++.++++++++.++++++  |++++++|+++|++|+|+|+|||+|+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~  287 (287)
T PRK08293        242 TAYNITSNWAEATDDENAKKAAALLKEYIDKGKLGVATGEGFYNYP  287 (287)
T ss_pred             HHHHHHHHHHHHhCCcccccchHHHHHHHHCCCCcccCCCccccCc
Confidence            999999999999988753  88999999999999999999999994

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=3.1e-54  Score=453.65  Aligned_cols=281  Identities=32%  Similarity=0.512  Sum_probs=267.5

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  383 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  383 (721)
                      ++||+|||+|.||.+||..++++|++|++||++++.++.+.+++...+...++.+.++..+.+....+++.++++ +.++
T Consensus         1 ~~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   80 (288)
T PRK09260          1 IEKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVA   80 (288)
T ss_pred             CcEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhc
Confidence            468999999999999999999999999999999999999988888888888888999988888888899988888 6789


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCCCH
Q 004972          384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA  463 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t~~  463 (721)
                      +||+||+|+|++.++|+.+++++.+.+++++++++|+|+++++++++.+.++.+++|+||++|++.++++|+++++.|++
T Consensus        81 ~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~~Pv~~~~Lve~v~g~~t~~  160 (288)
T PRK09260         81 DADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFFNPVHKMKLVELIRGLETSD  160 (288)
T ss_pred             CCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEEEeCCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHH
Q 004972          464 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA  541 (721)
Q Consensus       464 e~~~~~~~l~~~lG~~~v~v~d~~gfi~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~G~p~Gpf~~~D~~Gld~~~  541 (721)
                      ++++++.++++.+|+.|++++|.|||++||++.++++||++++++|+ ++++||.++ .++|||+|||+++|.+|+|++.
T Consensus       161 ~~~~~~~~~l~~lg~~~v~v~d~~Gf~~nRl~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~p~Gp~~~~D~~Gl~~~~  240 (288)
T PRK09260        161 ETVQVAKEVAEQMGKETVVVNEFPGFVTSRISALVGNEAFYMLQEGVATAEDIDKAIRLGLNFPMGPLELGDLVGLDTRL  240 (288)
T ss_pred             HHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhHHHHH
Confidence            99999999999999999999999999999999999999999999997 999999999 7999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCcHHHHHHHHcCCCCcccCccccccCCCC
Q 004972          542 ATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGS  585 (721)
Q Consensus       542 ~~~~~l~~~~~~~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~  585 (721)
                      ++++.+++.+++++.|++++.+|+++|++|+|+|+|||+|++++
T Consensus       241 ~~~~~l~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~~  284 (288)
T PRK09260        241 NNLKYLHETLGEKYRPAPLLEKYVKAGRLGRKTGRGVYDYTNRE  284 (288)
T ss_pred             HHHHHHHHHhCCCCCCCHHHHHHHHCCCCccccCCEEEECCCCC
Confidence            99999999988877799999999999999999999999997643

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=100.00  E-value=3.1e-54  Score=454.38  Aligned_cols=278  Identities=31%  Similarity=0.549  Sum_probs=263.4

Q ss_pred             CceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHH---HHHhhhhcCCCCHHHHHHhhcCceeccCcc
Q 004972          304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEA---NVRGLVTRGKLTQDKANNALKMLKGVLDYS  380 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  380 (721)
                      +++||+|||+|.||++||..++++|++|++||++++.++.+.+++++   .+...++.+.++..+.+....++..+++++
T Consensus         2 ~i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~   81 (291)
T PRK06035          2 DIKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYE   81 (291)
T ss_pred             CCcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCHH
Confidence            47899999999999999999999999999999999999988777765   366677888888888888888898888887


Q ss_pred             ccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCC
Q 004972          381 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTER  460 (721)
Q Consensus       381 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~  460 (721)
                      .+++||+||+|+|++.++|+++++++.+.+++++||+||||+++++++++.+.+++|++|+|||+|++.++++|+++++.
T Consensus        82 ~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~~vEv~~g~~  161 (291)
T PRK06035         82 SLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWFNPAPVMKLIEVVRAAL  161 (291)
T ss_pred             HhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCccEEEeCCCC
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchH
Q 004972          461 TSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYG  538 (721)
Q Consensus       461 t~~e~~~~~~~l~~~lG~~~v~v~d~~gfi~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~G~p~Gpf~~~D~~Gld  538 (721)
                      |++++++.+.++++.+|+.|++++|.|||++||++.++++||++++++|+ +++|||+++ .++|+|+|||+++|.+|||
T Consensus       162 T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~~~~ea~~~~~~g~a~~~~iD~~~~~~~g~~~Gp~~~~D~~Gl~  241 (291)
T PRK06035        162 TSEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEGWLLEAIRSFEIGIATIKDIDEMCKLAFGFPMGPFELMDIIGID  241 (291)
T ss_pred             CCHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhcCCCccCHHHHHHHhhHH
Confidence            99999999999999999999999999999999999999999999999997 999999999 8999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCC-CcHHHHHHHHcCCCCccc-----Ccccccc
Q 004972          539 VAAATSKEFDKAFPDRSF-QSPLVDLLLKSGRNGKAN-----GKGLYTY  581 (721)
Q Consensus       539 ~~~~~~~~l~~~~~~~~~-~~~~l~~~v~~G~~G~k~-----g~GfY~y  581 (721)
                      ++.++++.+++.++++++ |++++++|+++|++|+|+     |+|||+|
T Consensus       242 ~~~~~~~~l~~~~~~~~~~~~~~l~~~v~~g~~G~k~~~~~~g~Gfy~y  290 (291)
T PRK06035        242 TVYHIAEYLYEETGDPQFIPPNSLKQMVLNGYVGDKKVKYGSKGGWFDY  290 (291)
T ss_pred             HHHHHHHHHHHHcCCCcCCccHHHHHHHHCCCCcCCCCCCCCCceeeec
Confidence            999999999999988665 889999999999999999     9999998

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=4.2e-54  Score=451.46  Aligned_cols=278  Identities=36%  Similarity=0.617  Sum_probs=267.0

Q ss_pred             CceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972          304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  383 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  383 (721)
                      .|+||+|||+|.||.+||..++++|++|+++|++++.++++..++++.++...+.|.++..+......+++.+++++.++
T Consensus         2 ~~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~   81 (282)
T PRK05808          2 GIQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDLK   81 (282)
T ss_pred             CccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhc
Confidence            46799999999999999999999999999999999999999999999999999999999888888888999898987799


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCCCH
Q 004972          384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA  463 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t~~  463 (721)
                      +||+||+|+||+.++|+++++++.++++++++|+|+||+++++++++.+.++.|++|+||++|++.++++|+++++.|++
T Consensus        82 ~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~~~~vev~~g~~t~~  161 (282)
T PRK05808         82 DADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRGLATSD  161 (282)
T ss_pred             cCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCcccCccEEEeCCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHH
Q 004972          464 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA  541 (721)
Q Consensus       464 e~~~~~~~l~~~lG~~~v~v~d~~gfi~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~G~p~Gpf~~~D~~Gld~~~  541 (721)
                      ++++.+.++++.+|+.|++++|.|||++||++.+++||+++++++|+ +|+|||.++ .++|||+|||+++|.+|+|.+.
T Consensus       162 e~~~~~~~l~~~lGk~pv~~~d~~g~i~~Ri~~~~~~ea~~~~~~gv~~~~diD~~~~~g~g~p~Gp~~~~D~~Gl~~~~  241 (282)
T PRK05808        162 ATHEAVEALAKKIGKTPVEVKNAPGFVVNRILIPMINEAIFVLAEGVATAEDIDEGMKLGCNHPIGPLALADLIGLDTCL  241 (282)
T ss_pred             HHHHHHHHHHHHcCCeeEEecCccChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhhHHHH
Confidence            99999999999999999999999999999999999999999999997 999999999 8999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCC-CcHHHHHHHHcCCCCcccCcccccc
Q 004972          542 ATSKEFDKAFPDRSF-QSPLVDLLLKSGRNGKANGKGLYTY  581 (721)
Q Consensus       542 ~~~~~l~~~~~~~~~-~~~~l~~~v~~G~~G~k~g~GfY~y  581 (721)
                      ++++.+++.++++.+ |++++++|+++|++|+|+|+|||+|
T Consensus       242 ~~~~~l~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y  282 (282)
T PRK05808        242 AIMEVLYEGFGDSKYRPCPLLRKMVAAGWLGRKTGRGFYDY  282 (282)
T ss_pred             HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCcccCC
Confidence            999999999887554 8899999999999999999999998

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=100.00  E-value=1.2e-53  Score=451.07  Aligned_cols=282  Identities=32%  Similarity=0.577  Sum_probs=269.8

Q ss_pred             CceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972          304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  383 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  383 (721)
                      +++||+|||+|.||.+||..++++|++|++||++++.++.+.+++++.++.+++.|.++.++.+..++++.++++.+.++
T Consensus         3 ~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   82 (295)
T PLN02545          3 EIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELR   82 (295)
T ss_pred             CcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhC
Confidence            47899999999999999999999999999999999999999999999999999999999988888888888888888899


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCCCH
Q 004972          384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA  463 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t~~  463 (721)
                      +||+|||||||++++|+.+++++.+.+++++||+||||+++++++++.+.++.+++|+||++|++.++++|+++++.|++
T Consensus        83 ~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~lveiv~g~~t~~  162 (295)
T PLN02545         83 DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKLVEIIRGADTSD  162 (295)
T ss_pred             CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCceEEEeCCCCCCH
Confidence            99999999999999999999999999999999999999999999999998899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHH
Q 004972          464 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA  541 (721)
Q Consensus       464 e~~~~~~~l~~~lG~~~v~v~d~~gfi~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~G~p~Gpf~~~D~~Gld~~~  541 (721)
                      ++++.+.++++.+|+.+++++|.|||++||++.++++|+++++++|+ ++++||.++ .++|||+|||+++|.+|+|++.
T Consensus       163 e~~~~~~~ll~~lG~~~~~~~d~~g~i~nri~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~~~Gp~~~~D~~Gl~~~~  242 (295)
T PLN02545        163 EVFDATKALAERFGKTVVCSQDYPGFIVNRILMPMINEAFYALYTGVASKEDIDTGMKLGTNHPMGPLHLADFIGLDTCL  242 (295)
T ss_pred             HHHHHHHHHHHHcCCeeEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCCCHHHHHHHhchHHHH
Confidence            99999999999999999999999999999999999999999999997 999999999 8999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCC-CcHHHHHHHHcCCCCcccCccccccCCCC
Q 004972          542 ATSKEFDKAFPDRSF-QSPLVDLLLKSGRNGKANGKGLYTYEKGS  585 (721)
Q Consensus       542 ~~~~~l~~~~~~~~~-~~~~l~~~v~~G~~G~k~g~GfY~y~~~~  585 (721)
                      ++++.+++.+++++| |++++++|+++|++|+|+|+|||+|++++
T Consensus       243 ~~~~~l~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~~  287 (295)
T PLN02545        243 SIMKVLHEGLGDSKYRPCPLLVQYVDAGRLGRKSGRGVYHYDGKK  287 (295)
T ss_pred             HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCcccCCCeeeECCCCC
Confidence            999999999887554 88999999999999999999999997654

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=2.7e-53  Score=447.70  Aligned_cols=281  Identities=32%  Similarity=0.524  Sum_probs=267.4

Q ss_pred             CceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972          304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  383 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  383 (721)
                      +++||+|||+|.||.+||..++++|++|++||++++.++++.+++.+.+...++.|.++..+.+..+.+++++++++.++
T Consensus         3 ~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   82 (292)
T PRK07530          3 AIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLEDLA   82 (292)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHHhc
Confidence            47899999999999999999999999999999999999999888888888888889998888777888899999888899


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCCCH
Q 004972          384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA  463 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t~~  463 (721)
                      +||+||+||||+.++|+.+++++.+.++++++|+||||+++++++++.+.+++|++|+||++|++.++++|++++..|++
T Consensus        83 ~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~~~~~~~r~~g~h~~~p~~~~~~vei~~g~~t~~  162 (292)
T PRK07530         83 DCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLASATDRPERFIGIHFMNPVPVMKLVELIRGIATDE  162 (292)
T ss_pred             CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEeeccCCcccCceEEEeCCCCCCH
Confidence            99999999999999999999999999999999999999999999999988899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHH
Q 004972          464 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAA  541 (721)
Q Consensus       464 e~~~~~~~l~~~lG~~~v~v~d~~gfi~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~G~p~Gpf~~~D~~Gld~~~  541 (721)
                      ++++.+.++++.+|+.|++++|.|||++||++.++++|+++++++|+ ++++||+++ .++|||+|||+++|.+|+|++.
T Consensus       163 ~~~~~~~~~~~~~gk~~v~~~d~pg~i~nRl~~~~~~ea~~~~~~g~~~~~~iD~~~~~g~g~~~GP~~~~D~~Gl~~~~  242 (292)
T PRK07530        163 ATFEAAKEFVTKLGKTITVAEDFPAFIVNRILLPMINEAIYTLYEGVGSVEAIDTAMKLGANHPMGPLELADFIGLDTCL  242 (292)
T ss_pred             HHHHHHHHHHHHcCCeEEEecCcCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhhHHHH
Confidence            99999999999999999999999999999999999999999999998 999999999 7999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCC-CcHHHHHHHHcCCCCcccCccccccCCC
Q 004972          542 ATSKEFDKAFPDRSF-QSPLVDLLLKSGRNGKANGKGLYTYEKG  584 (721)
Q Consensus       542 ~~~~~l~~~~~~~~~-~~~~l~~~v~~G~~G~k~g~GfY~y~~~  584 (721)
                      ++++.+++.++++.+ |++++.+|+++|++|+|+|+|||+|+++
T Consensus       243 ~~~~~~~~~~~~~~~~p~~~l~~~v~~g~~G~k~g~Gfy~y~~~  286 (292)
T PRK07530        243 SIMQVLHDGLADSKYRPCPLLVKYVEAGWLGRKTGRGFYDYRGE  286 (292)
T ss_pred             HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCEeeeCCCC
Confidence            999999999887554 8899999999999999999999999654

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=9.5e-52  Score=435.80  Aligned_cols=268  Identities=28%  Similarity=0.411  Sum_probs=255.2

Q ss_pred             CcHHHHHHHHHCCCceEEEeCCHH-------HHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccC--c-cccCCC
Q 004972          316 MGSGIATAHILNNIYVVLKEVNSE-------YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD--Y-SEFKDV  385 (721)
Q Consensus       316 mG~~iA~~la~~G~~V~l~d~~~~-------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~-~~l~~a  385 (721)
                      ||++||..++.+|++|+++|++++       .++++.+++.+.++.++++|.+++++.+..+++|+++++  . +++++|
T Consensus         1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a   80 (314)
T PRK08269          1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA   80 (314)
T ss_pred             CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence            899999999999999999999995       467788999999999999999999999999999998865  3 568999


Q ss_pred             CEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCCCHHH
Q 004972          386 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQV  465 (721)
Q Consensus       386 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t~~e~  465 (721)
                      |+|||||||+.++|+.+|+++.+.+++++||+||||+++++++++.+.+|+|++|+|||+||+.+++|||++++.|++++
T Consensus        81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~~t~~e~  160 (314)
T PRK08269         81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSDATDPAV  160 (314)
T ss_pred             CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCCCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCC---ccHHHHHHhhchHHH
Q 004972          466 ILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLP---IGPFQLLDLAGYGVA  540 (721)
Q Consensus       466 ~~~~~~l~~~lG~~~v~v~d~~gfi~nRl~~~~~~Ea~~l~~~G-v~~~~ID~a~-~~~G~p---~Gpf~~~D~~Gld~~  540 (721)
                      ++++.++++.+|+.|++++|.|||++||++.++++|++.++++| +++++||.++ .++|+|   +|||+++|.+|+|++
T Consensus       161 ~~~~~~ll~~lGk~~v~v~d~~Gfi~nri~~~~l~EAl~l~e~g~~~~e~iD~a~~~g~G~~~~~~Gpf~~~D~~Gld~~  240 (314)
T PRK08269        161 VDRLAALLERIGKVPVVCGPSPGYIVPRIQALAMNEAARMVEEGVASAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCDIL  240 (314)
T ss_pred             HHHHHHHHHHcCCcEEEecCCCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHHHhhhHHHH
Confidence            99999999999999999999999999999999999999999997 5999999999 799999   699999999999999


Q ss_pred             HHHHHHHHHhCCC-CCCCcHHHHHHHHcCCCCcccCccccccCC
Q 004972          541 AATSKEFDKAFPD-RSFQSPLVDLLLKSGRNGKANGKGLYTYEK  583 (721)
Q Consensus       541 ~~~~~~l~~~~~~-~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~  583 (721)
                      +++++.+++.+++ ++.|++++++|+++|++|+|+|+|||+|++
T Consensus       241 ~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~ksG~GfY~y~~  284 (314)
T PRK08269        241 YYASRYLAGEIGPDRFAPPAIVVRNMEEGRDGLRTGAGFYDYAG  284 (314)
T ss_pred             HHHHHHHHHHhCCCCCCCCHHHHHHHHCCCCcccCCCcceeCCC
Confidence            9999999998888 555899999999999999999999999964

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=9.1e-52  Score=433.49  Aligned_cols=277  Identities=24%  Similarity=0.325  Sum_probs=248.5

Q ss_pred             CCceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cc
Q 004972          303 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  381 (721)
Q Consensus       303 ~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  381 (721)
                      ++++||+|||+|.||++||..++.+|++|++||++++.++++.+++.+.++.+.+.+ ++..   ...++++.++++ +.
T Consensus         5 ~~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~-~~~~---~~~~~i~~~~~l~~a   80 (321)
T PRK07066          5 TDIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQG-LAPG---ASPARLRFVATIEAC   80 (321)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcC-CChh---hHHhhceecCCHHHH
Confidence            457899999999999999999999999999999999999999888888888888877 3332   334688888888 56


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCC
Q 004972          382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT  461 (721)
Q Consensus       382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t  461 (721)
                      +++||+|||||||++++|+++|+++.+++++++||+||||+++++++++.+.+|+||+|+||||||+.+|+|||++++.|
T Consensus        81 v~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLVEVv~g~~T  160 (321)
T PRK07066         81 VADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERT  160 (321)
T ss_pred             hcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCeeEEE-cCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCC---ccHHHHHHhh
Q 004972          462 SAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLP---IGPFQLLDLA  535 (721)
Q Consensus       462 ~~e~~~~~~~l~~~lG~~~v~v-~d~~gfi~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~G~p---~Gpf~~~D~~  535 (721)
                      ++++++.+..|++.+||.||++ +|.||||+||++.++++||++++++|+ |++|||+++ .++|+|   +|||+++|++
T Consensus       161 ~~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~NRl~~a~~~EA~~lv~eGvas~edID~a~~~g~g~r~~~~Gpf~~~Dl~  240 (321)
T PRK07066        161 APEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLLEALWREALHLVNEGVATTGEIDDAIRFGAGIRWSFMGTFLTYTLA  240 (321)
T ss_pred             CHHHHHHHHHHHHHcCCEeEecCCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHhhhc
Confidence            9999999999999999999999 799999999999999999999999997 999999999 799998   8999999999


Q ss_pred             chHH-HHHHHHHHHHhCCCC---CCCcHHHHHHHH------cCCCCcccCccccccCC
Q 004972          536 GYGV-AAATSKEFDKAFPDR---SFQSPLVDLLLK------SGRNGKANGKGLYTYEK  583 (721)
Q Consensus       536 Gld~-~~~~~~~l~~~~~~~---~~~~~~l~~~v~------~G~~G~k~g~GfY~y~~  583 (721)
                      |+|. +.+.++.+.+.+.+.   ..+|++..+|++      ++.+|.++..++|.|.+
T Consensus       241 Gld~g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd  298 (321)
T PRK07066        241 GGDAGMRHFMQQFGPALELPWTKLVAPELTDALIDRVVEGTAEQQGPRSIKALERYRD  298 (321)
T ss_pred             ChHHHHHHHHHHhhhhhhHHHHhcCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            9998 455556665554321   124556666766      68999999999999964

>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=100.00  E-value=1.2e-48  Score=382.09  Aligned_cols=241  Identities=32%  Similarity=0.514  Sum_probs=218.1

Q ss_pred             cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHH
Q 004972           12 NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV   90 (721)
Q Consensus        12 ~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~   90 (721)
                      +++|+.||||||+ +|+++..++.+|.+++..+++|+++.++||||.|+.||+|+||+++......+-..   ..+.+.+
T Consensus        44 d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~---~~~~~~~  120 (290)
T KOG1680|consen   44 DNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSD---GIFLRVW  120 (290)
T ss_pred             CCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhcccccccc---ccccchh
Confidence            7889999999996 69999999999999999999999999999999999999999999997643222111   1122333


Q ss_pred             HHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHHHHHcCCCcC
Q 004972           91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSIT  167 (721)
Q Consensus        91 ~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~l~ltg~~~~  167 (721)
                       ..+.+.+||+||+|||+|+|||+||++.||+|||+++|+|++|+.++|++|+   |+||+|.+|..+|+++++||++++
T Consensus       121 -~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~~ltg~~~~  199 (290)
T KOG1680|consen  121 -DLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEMILTGRRLG  199 (290)
T ss_pred             -hhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChHHHHHHHHhcCccc
Confidence             4455899999999999999999999999999999999999999999999997   999999999999999999999999


Q ss_pred             HHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 004972          168 SEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDV  247 (721)
Q Consensus       168 a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  247 (721)
                      |+||+++|||++|||.++++.+|.+|+++|++.|+..+                                    .+.|+.
T Consensus       200 AqeA~~~GlVn~Vvp~~~~l~eAv~l~~~Ia~~~~~~v------------------------------------~~~K~s  243 (290)
T KOG1680|consen  200 AQEAKKIGLVNKVVPSGDALGEAVKLAEQIAKNSPLVV------------------------------------RADKES  243 (290)
T ss_pred             HHHHHhCCceeEeecchhHHHHHHHHHHHHHhCCHHHH------------------------------------HHHHHH
Confidence            99999999999999999999999999999999987432                                    356788


Q ss_pred             HHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004972          248 IEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  292 (721)
Q Consensus       248 i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  292 (721)
                      ++.+.++++.+++..|...|...+.++|.+|+|.+|.+||++++.
T Consensus       244 vn~~~e~~l~e~l~~e~~~~~s~~~~~d~~Eg~~~f~~kr~~~~~  288 (290)
T KOG1680|consen  244 VNAAYETTLFEGLELERDLFGSTFATEDRLEGMTAFAEKRKPKFS  288 (290)
T ss_pred             HHHHhhccHHHHHHhhhhhhhhhhhhHHHHHHHHHhcccCCcccc
Confidence            999999999999999999999999999999999999999998864

>PRK06495 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.1e-47  Score=396.13  Aligned_cols=253  Identities=31%  Similarity=0.457  Sum_probs=224.9

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCC-Ccc
Q 004972            1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA-GDV   79 (721)
Q Consensus         1 m~~~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~-~~~   79 (721)
                      |+++.+.+++ +++|++||||||+.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++...... ...
T Consensus         1 ~~~~~i~~~~-~~~v~~itlnrp~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~   79 (257)
T PRK06495          1 MMMSQLKLEV-SDHVAVVTLDNPPVNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDL   79 (257)
T ss_pred             CCcceEEEEe-eCCEEEEEECCCccccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhH
Confidence            8889999998 78999999999988999999999999999999999999999999999999999999987542111 111


Q ss_pred             cccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCccccccccccccCHHHHHHH
Q 004972           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGTQRLPRLVGLSKAIEM  159 (721)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~~~~l~r~~G~~~a~~l  159 (721)
                      ........+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+++++.++++++|..+|++|
T Consensus        80 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~~~l~~~~g~~~a~~l  158 (257)
T PRK06495         80 RAHNRRTRECF-HAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLAGGGKHAMRLFGHSLTRRM  158 (257)
T ss_pred             HHHHHHHHHHH-HHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCccccHHHHHHHhCHHHHHHH
Confidence            11122234455 66889999999999999999999999999999999999999999999998668889999999999999


Q ss_pred             HHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCCh
Q 004972          160 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP  239 (721)
Q Consensus       160 ~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (721)
                      +++|++++|+||+++||||++||++++++++.++++++++.+|..+                                  
T Consensus       159 ll~g~~~~a~eA~~~GLv~~vv~~~~~~~~a~~~a~~l~~~~~~a~----------------------------------  204 (257)
T PRK06495        159 MLTGYRVPAAELYRRGVIEACLPPEELMPEAMEIAREIASKSPLAT----------------------------------  204 (257)
T ss_pred             HHcCCeeCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHH----------------------------------
Confidence            9999999999999999999999999999999999999999887532                                  


Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          240 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       240 A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                        ..+|+.++.....++.++++.|.+.+..++.|+|+++++++|++||++++
T Consensus       205 --~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~af~~kr~p~~  254 (257)
T PRK06495        205 --RLAKDALNTIENMSLRDGYRYEQDITAKLAKTEDAKEAQRAFLEKRPPVF  254 (257)
T ss_pred             --HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhccCCCCC
Confidence              34567777777788999999999999999999999999999999998875

>PRK08139 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=1.4e-47  Score=396.98  Aligned_cols=253  Identities=23%  Similarity=0.337  Sum_probs=223.7

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcc
Q 004972            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (721)
Q Consensus         1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   79 (721)
                      |..+.+.++. +++|++||||||+ .|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++.........
T Consensus         8 ~~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   86 (266)
T PRK08139          8 TEAPLLLRED-RDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYF   86 (266)
T ss_pred             ccCCceEEEe-eCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcccchhHH
Confidence            3467888998 7999999999995 6999999999999999999999999999999999999999999987542211111


Q ss_pred             cccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc--ccccccccCHHHHH
Q 004972           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG--TQRLPRLVGLSKAI  157 (721)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~--~~~l~r~~G~~~a~  157 (721)
                      ..+.....+++ ..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|+  +.+|+|++|..+|+
T Consensus        87 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~l~r~vG~~~A~  165 (266)
T PRK08139         87 RALFARCSRVM-QAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTPMVALSRNVPRKQAM  165 (266)
T ss_pred             HHHHHHHHHHH-HHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCccHHHHHHHhCHHHHH
Confidence            11222233455 6689999999999999999999999999999999999999999999999997  67899999999999


Q ss_pred             HHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCC
Q 004972          158 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN  237 (721)
Q Consensus       158 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (721)
                      +|+++|++++|+||+++||||+|+|++++++++.++++++++.+|..                                 
T Consensus       166 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a---------------------------------  212 (266)
T PRK08139        166 EMLLTGEFIDAATAREWGLVNRVVPADALDAAVARLAAVIAAKSPAA---------------------------------  212 (266)
T ss_pred             HHHHcCCccCHHHHHHcCCccEeeChhHHHHHHHHHHHHHHhCCHHH---------------------------------
Confidence            99999999999999999999999999999999999999999988643                                 


Q ss_pred             ChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          238 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       238 ~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                         ...+|++++.....++.++++.|.+.+..++.++|+++++++|++||++++
T Consensus       213 ---~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~  263 (266)
T PRK08139        213 ---VRIGKEAFYRQAEMPLADAYAYAGDVMAENMMAEDAEEGIDAFLEKRPPEW  263 (266)
T ss_pred             ---HHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence               235677888888888999999999999999999999999999999988775

>PRK05862 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.6e-47  Score=395.38  Aligned_cols=250  Identities=30%  Similarity=0.454  Sum_probs=224.1

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcc
Q 004972            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (721)
Q Consensus         1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   79 (721)
                      |+++.+.+++ +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.....   .
T Consensus         1 ~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~---~   76 (257)
T PRK05862          1 MAYETILVET-RGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSF---M   76 (257)
T ss_pred             CCCceEEEEe-eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccch---h
Confidence            7888899998 7899999999996 699999999999999999999999999999999999999999998754211   1


Q ss_pred             cccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHH
Q 004972           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKA  156 (721)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a  156 (721)
                      ..+.......+ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|+|++|..+|
T Consensus        77 ~~~~~~~~~~~-~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a  155 (257)
T PRK05862         77 DVYKGDYITNW-EKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKA  155 (257)
T ss_pred             HHHHHHHHHHH-HHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHH
Confidence            11112223444 5689999999999999999999999999999999999999999999999997   7899999999999


Q ss_pred             HHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004972          157 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  236 (721)
Q Consensus       157 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (721)
                      ++|+++|++++|+||+++||||+|+|++++++++.++++++++.++.                                 
T Consensus       156 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~---------------------------------  202 (257)
T PRK05862        156 MDLCLTGRMMDAAEAERAGLVSRVVPADKLLDEALAAATTIASFSLP---------------------------------  202 (257)
T ss_pred             HHHHHhCCccCHHHHHHcCCCCEeeCHhHHHHHHHHHHHHHHhCCHH---------------------------------
Confidence            99999999999999999999999999999999999999999988764                                 


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          237 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       237 ~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                         ++..+|++++.....++.++++.|.+.+..++.|+|+++++++|++||++.+
T Consensus       203 ---a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~e~i~af~~kr~p~~  254 (257)
T PRK05862        203 ---AVMMAKEAVNRAYETTLAEGLLFERRLFHSLFATEDQKEGMAAFVEKRKPVF  254 (257)
T ss_pred             ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCCC
Confidence               3345677888887888999999999999999999999999999999998764

>PRK07658 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.3e-47  Score=396.41  Aligned_cols=249  Identities=40%  Similarity=0.649  Sum_probs=222.0

Q ss_pred             cEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccch
Q 004972            5 RVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD   84 (721)
Q Consensus         5 ~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   84 (721)
                      ++.+++ +++|++||||||+.|++|.+|+++|.+++++++.|+++++|||||.|++||+|+|++++...........+..
T Consensus         3 ~i~~~~-~~~v~~itl~rp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   81 (257)
T PRK07658          3 FLSVRV-EDHVAVITLNHPPANALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQ   81 (257)
T ss_pred             eEEEEe-eCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHHHHHH
Confidence            688888 7899999999998899999999999999999999999999999999999999999998854321111111222


Q ss_pred             HHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHHHHH
Q 004972           85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMML  161 (721)
Q Consensus        85 ~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~l~l  161 (721)
                      ..+.++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|+|++|..+|++|++
T Consensus        82 ~~~~~~-~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l  160 (257)
T PRK07658         82 LGQVTF-ERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEMML  160 (257)
T ss_pred             HHHHHH-HHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHHHHHH
Confidence            334555 6789999999999999999999999999999999999999999999999997   789999999999999999


Q ss_pred             cCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChhH
Q 004972          162 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH  241 (721)
Q Consensus       162 tg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~  241 (721)
                      +|++++|+||+++||||+|||++++++++.++++++++.+|.                                    ++
T Consensus       161 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~------------------------------------a~  204 (257)
T PRK07658        161 TSEPITGAEALKWGLVNGVFPEETLLDDAKKLAKKIAGKSPA------------------------------------TT  204 (257)
T ss_pred             cCCCcCHHHHHHcCCcCeecChhHHHHHHHHHHHHHHhCCHH------------------------------------HH
Confidence            999999999999999999999999999999999999998764                                    23


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          242 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       242 ~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                      ..+|++++.+...+++++++.|.+.+..++.|+|+++++++|++||++++
T Consensus       205 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~  254 (257)
T PRK07658        205 RAVLELLQTTKSSSYYEGVKREAKIFGEVFTSEDAKEGVQAFLEKRKPSF  254 (257)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence            35677888777788999999999999999999999999999999988775

>PRK05980 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.3e-47  Score=395.10  Aligned_cols=251  Identities=32%  Similarity=0.522  Sum_probs=221.5

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcCCCCchhhhhccCCC-
Q 004972            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAG-   77 (721)
Q Consensus         1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~-   77 (721)
                      |+ +.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++....... 
T Consensus         1 m~-~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~   78 (260)
T PRK05980          1 MT-DTVLIEI-RDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGA   78 (260)
T ss_pred             CC-ceEEEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccc
Confidence            66 4688888 7899999999995 7999999999999999999999999999999998 6999999999875421111 


Q ss_pred             --cccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccC
Q 004972           78 --DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVG  152 (721)
Q Consensus        78 --~~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G  152 (721)
                        ....+.....+++ ..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|+   +++|+|++|
T Consensus        79 ~~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG  157 (260)
T PRK05980         79 DVALRDFVRRGQAMT-ARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAG  157 (260)
T ss_pred             hhhHHHHHHHHHHHH-HHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcC
Confidence              1112222233455 5688999999999999999999999999999999999999999999999997   889999999


Q ss_pred             HHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHH
Q 004972          153 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK  232 (721)
Q Consensus       153 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (721)
                      ..+|++|+++|++++|+||+++||||+|||++++++++.++++++++.+|.+                            
T Consensus       158 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a----------------------------  209 (260)
T PRK05980        158 RKRALELLLTGDAFSAERALEIGLVNAVVPHEELLPAARALARRIIRHSPVA----------------------------  209 (260)
T ss_pred             HHHHHHHHHcCCccCHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHhCCHHH----------------------------
Confidence            9999999999999999999999999999999999999999999999987643                            


Q ss_pred             HhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhc
Q 004972          233 KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS  290 (721)
Q Consensus       233 ~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~  290 (721)
                              ...+|++++.....+++++++.|.+.+..++.++|+++++.+|++||+++
T Consensus       210 --------~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~  259 (260)
T PRK05980        210 --------VAAILTAVTRGLNLSIAEGLLIESEQFARMAGSADLREGLAAWIERRRPA  259 (260)
T ss_pred             --------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCC
Confidence                    33557778887778899999999999999999999999999999999875

>PRK06143 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.7e-47  Score=392.52  Aligned_cols=250  Identities=25%  Similarity=0.390  Sum_probs=220.7

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcCCCCchhhhhccCCCc
Q 004972            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD   78 (721)
Q Consensus         1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~   78 (721)
                      |+..++.++..+++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.| ++||+|+|++++..... ..
T Consensus         3 ~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~-~~   81 (256)
T PRK06143          3 MLNAHAGVTRDDRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQ-AS   81 (256)
T ss_pred             cccccceeeecCCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcCh-hh
Confidence            778889999757889999999995 6999999999999999999999999999999998 69999999998754221 11


Q ss_pred             ccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc--ccccccccCHHHH
Q 004972           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG--TQRLPRLVGLSKA  156 (721)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~--~~~l~r~~G~~~a  156 (721)
                      ...+....+.++ +.+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|+.|+  +++|++++|..+|
T Consensus        82 ~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~p~~~~~~~l~~~iG~~~a  160 (256)
T PRK06143         82 AEAFISRLRDLC-DAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGIPSVIHAALLPRLIGWART  160 (256)
T ss_pred             HHHHHHHHHHHH-HHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCCCCccHHHHHHHhcCHHHH
Confidence            112223334555 6688999999999999999999999999999999999999999999998333  7899999999999


Q ss_pred             HHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004972          157 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  236 (721)
Q Consensus       157 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (721)
                      ++|+++|++++|+||+++||||+|||++++.+++.++++++++.+|..                                
T Consensus       161 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a--------------------------------  208 (256)
T PRK06143        161 RWLLLTGETIDAAQALAWGLVDRVVPLAELDAAVERLAASLAGCGPQA--------------------------------  208 (256)
T ss_pred             HHHHHcCCcCCHHHHHHCCCcCeecCHHHHHHHHHHHHHHHHcCCHHH--------------------------------
Confidence            999999999999999999999999999999999999999999988643                                


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhh
Q 004972          237 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA  288 (721)
Q Consensus       237 ~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~  288 (721)
                          ...+|+.++.....+++++++.|.+.+..++.|+|+++++++|++||+
T Consensus       209 ----~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~  256 (256)
T PRK06143        209 ----LRQQKRLLREWEDMPLDVAIDDSVAEFGAAFLTGEPQRHMAAFLNRKR  256 (256)
T ss_pred             ----HHHHHHHHHHHccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhcC
Confidence                234567777777788999999999999999999999999999999975

>PRK07938 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2e-47  Score=391.81  Aligned_cols=247  Identities=26%  Similarity=0.336  Sum_probs=216.4

Q ss_pred             EEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchH
Q 004972            6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV   85 (721)
Q Consensus         6 v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   85 (721)
                      ++.+..+++|++||||||+.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++...............
T Consensus         3 ~~~~~~~~~v~~itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~   82 (249)
T PRK07938          3 ITSTTPEPGIAEVTVDYPPVNALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRG   82 (249)
T ss_pred             eeecccCCCEEEEEECCCCcccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHHH
Confidence            45544478899999999988999999999999999999999999999999999999999999987542111111111122


Q ss_pred             HHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCccccccccccccCHHHHHHHHHcCCC
Q 004972           86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGTQRLPRLVGLSKAIEMMLLSKS  165 (721)
Q Consensus        86 ~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~~~~l~r~~G~~~a~~l~ltg~~  165 (721)
                      ...++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++.+|++++|..++++|+++|++
T Consensus        83 ~~~~~-~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~g~~~~l~~~vg~~~a~~l~ltg~~  161 (249)
T PRK07938         83 CFAAF-RAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGALGAATHLQRLVPQHLMRALFFTAAT  161 (249)
T ss_pred             HHHHH-HHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCchhHHHHHHhcCHHHHHHHHHhCCc
Confidence            33455 66899999999999999999999999999999999999999999999998778899999999999999999999


Q ss_pred             cCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 004972          166 ITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACL  245 (721)
Q Consensus       166 ~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  245 (721)
                      ++|+||+++||||+|||++++++++.++++++++.+|..+                                    ..+|
T Consensus       162 ~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~------------------------------------~~~K  205 (249)
T PRK07938        162 ITAAELHHFGSVEEVVPRDQLDEAALEVARKIAAKDTRVI------------------------------------RAAK  205 (249)
T ss_pred             CCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHhCCHHHH------------------------------------HHHH
Confidence            9999999999999999999999999999999999876432                                    3456


Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhh
Q 004972          246 DVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRAT  289 (721)
Q Consensus       246 ~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~  289 (721)
                      +.++.....+++++++.|.+.+..++.++|+++++++|++||+|
T Consensus       206 ~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p  249 (249)
T PRK07938        206 EALNGIDPQDVERSYRWEQGFTFELNLAGVSDEHRDAFVEKRKA  249 (249)
T ss_pred             HHHHhhccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHhcCCC
Confidence            77777777788999999999999999999999999999999874

>PRK05995 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.1e-47  Score=392.34  Aligned_cols=253  Identities=26%  Similarity=0.368  Sum_probs=222.4

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcc
Q 004972            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (721)
Q Consensus         1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   79 (721)
                      |+++.+.++. +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.........
T Consensus         1 ~~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   79 (262)
T PRK05995          1 MMYETLEIEQ-RGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDD   79 (262)
T ss_pred             CCCceEEEEe-eCCEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCch
Confidence            8889999998 7899999999995 6999999999999999999999999999999999999999999987542111101


Q ss_pred             ccc--chHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc--ccccccccCHHH
Q 004972           80 SLM--PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG--TQRLPRLVGLSK  155 (721)
Q Consensus        80 ~~~--~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~--~~~l~r~~G~~~  155 (721)
                      ...  ......++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+  ..++++++|..+
T Consensus        80 ~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~l~~~vg~~~  158 (262)
T PRK05995         80 ENRADARRLADML-RAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISPYVIRAMGERA  158 (262)
T ss_pred             hhhhHHHHHHHHH-HHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHHHHHHHhCHHH
Confidence            111  12234455 6689999999999999999999999999999999999999999999999998  567999999999


Q ss_pred             HHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004972          156 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  235 (721)
Q Consensus       156 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (721)
                      |++|+++|++++|+||+++||||+|||++++.+++.++++++++.+|..                               
T Consensus       159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a-------------------------------  207 (262)
T PRK05995        159 ARRYFLTAERFDAAEALRLGLVHEVVPAEALDAKVDELLAALVANSPQA-------------------------------  207 (262)
T ss_pred             HHHHHHcCCccCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCCHHH-------------------------------
Confidence            9999999999999999999999999999999999999999999987643                               


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          236 PNMPQHQACLDVIEEGIVHGGYSG-VLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       236 ~~~~A~~~~~~~i~~~~~~~~~~~-l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                           ...+|++++.....++.+. ++.|...+..++.|+|+++++++|++||++++
T Consensus       208 -----~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~~kr~p~~  259 (262)
T PRK05995        208 -----VRAGKRLVRDVAGRPIDAALIADTASRIALIRATEEAREGVAAFLEKRKPAW  259 (262)
T ss_pred             -----HHHHHHHHHhhhcCChhhHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence                 2345677777777788888 88999999999999999999999999998774

>PRK06142 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.1e-47  Score=396.49  Aligned_cols=253  Identities=27%  Similarity=0.403  Sum_probs=222.0

Q ss_pred             CC-CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCC--
Q 004972            1 MA-APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA--   76 (721)
Q Consensus         1 m~-~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~--   76 (721)
                      |+ ++.+.+++ +++|++||||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++......  
T Consensus         2 ~~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~   80 (272)
T PRK06142          2 MTTYESFTVEL-ADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLG   80 (272)
T ss_pred             CCCcceEEEEe-cCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhccccc
Confidence            55 57899998 8999999999994 7999999999999999999999999999999999999999999988542110  


Q ss_pred             -----Ccccc---cchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---cc
Q 004972           77 -----GDVSL---MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQ  145 (721)
Q Consensus        77 -----~~~~~---~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~  145 (721)
                           .....   .....++++ +.+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   ++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~  159 (272)
T PRK06142         81 KDGLARPRTDLRREILRLQAAI-NAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQ  159 (272)
T ss_pred             ccccccchHHHHHHHHHHHHHH-HHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHH
Confidence                 00011   112234455 5688999999999999999999999999999999999999999999999997   78


Q ss_pred             ccccccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCC-chHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHH
Q 004972          146 RLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVL  224 (721)
Q Consensus       146 ~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (721)
                      +|++++|..+|++|+++|++++|+||+++||||+|||+ +++++++.++++++++.+|..                    
T Consensus       160 ~l~~~~G~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~ia~~~~~a--------------------  219 (272)
T PRK06142        160 RLPRIIGDGHLRELALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHATAREIAAKSPLA--------------------  219 (272)
T ss_pred             HHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHHHHHHHHHhCCHHH--------------------
Confidence            99999999999999999999999999999999999985 889999999999999987643                    


Q ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          225 KLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       225 ~~~~~~~~~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                                      ...+|+.++.....++.++++.|...+..++.|+|+++++.+|++||++++
T Consensus       220 ----------------~~~~K~~l~~~~~~~l~~~~~~~~~~~~~~~~~~d~~egv~af~~kr~p~~  270 (272)
T PRK06142        220 ----------------VRGTKEVLDYMRDHRVADGLRYVATWNAAMLPSKDLTEAIAAHMEKRPPEF  270 (272)
T ss_pred             ----------------HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhcCCCCCC
Confidence                            234567777777788999999999999999999999999999999998764

>PRK09076 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4e-47  Score=392.32  Aligned_cols=248  Identities=31%  Similarity=0.470  Sum_probs=220.4

Q ss_pred             cEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcCCCCchhhhhccCCCcccccc
Q 004972            5 RVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVSLMP   83 (721)
Q Consensus         5 ~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~~~   83 (721)
                      .+.+++ +++|++||||||+.|++|.+|+.+|.++++.+++|+++++|||||.| ++||+|+|++++..... .....+.
T Consensus         4 ~v~~~~-~~~v~~itlnrp~~Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~-~~~~~~~   81 (258)
T PRK09076          4 ELDLEI-DGHVAILTLNNPPANTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDK-AVAREMA   81 (258)
T ss_pred             EEEEEE-ECCEEEEEECCCCcCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcCh-hhHHHHH
Confidence            488888 78999999999988999999999999999999999999999999998 68999999998754211 1111122


Q ss_pred             hHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHHHH
Q 004972           84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMM  160 (721)
Q Consensus        84 ~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~l~  160 (721)
                      ..+..++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|++++|..+|++|+
T Consensus        82 ~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~  160 (258)
T PRK09076         82 RRFGEAF-EALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMI  160 (258)
T ss_pred             HHHHHHH-HHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHHHHHHH
Confidence            2334455 6689999999999999999999999999999999999999999999999997   88999999999999999


Q ss_pred             HcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChh
Q 004972          161 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQ  240 (721)
Q Consensus       161 ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A  240 (721)
                      ++|++++|+||+++||||+|||++++++++.++++++++.+|..+                                   
T Consensus       161 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~-----------------------------------  205 (258)
T PRK09076        161 LCGERVDAATALRIGLVEEVVEKGEAREAALALAQKVANQSPSAV-----------------------------------  205 (258)
T ss_pred             HcCCcCCHHHHHHCCCCceecCchhHHHHHHHHHHHHHhCCHHHH-----------------------------------
Confidence            999999999999999999999999999999999999999887532                                   


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          241 HQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       241 ~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                       ..+|++++.....++.+.++.|.+.+..++.++|+++++++|++||++++
T Consensus       206 -~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~  255 (258)
T PRK09076        206 -AACKTLIQAARNGPRAAALALERELFVDLFDTEDQREGVNAFLEKRAPQW  255 (258)
T ss_pred             -HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence             34567777777778999999999999999999999999999999988775

>PRK08150 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.3e-47  Score=390.14  Aligned_cols=249  Identities=29%  Similarity=0.443  Sum_probs=219.7

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCccccc
Q 004972            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM   82 (721)
Q Consensus         4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (721)
                      +.|.+++ +++|++||||||+ .|++|.+|+.+|.+++++++  +++|+|||||.|++||+|+|++++..... ......
T Consensus         2 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~~~-~~~~~~   77 (255)
T PRK08150          2 SLVSYEL-DGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRERDA-GEGMHH   77 (255)
T ss_pred             ceEEEEe-eCCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhccc-hhHHHH
Confidence            4688888 7899999999995 79999999999999999997  78999999999999999999999854221 111112


Q ss_pred             chHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHHH
Q 004972           83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEM  159 (721)
Q Consensus        83 ~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~l  159 (721)
                      .....+++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|+|++|..+|++|
T Consensus        78 ~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l  156 (255)
T PRK08150         78 SRRWHRVF-DKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTDM  156 (255)
T ss_pred             HHHHHHHH-HHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHH
Confidence            22334555 6689999999999999999999999999999999999999999999999997   8899999999999999


Q ss_pred             HHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCCh
Q 004972          160 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP  239 (721)
Q Consensus       160 ~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (721)
                      +++|++++|+||+++||||+|||++++.+++.++++++++.+|..                                   
T Consensus       157 ~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a-----------------------------------  201 (255)
T PRK08150        157 MLTGRVYDAQEGERLGLAQYLVPAGEALDKAMELARRIAQNAPLT-----------------------------------  201 (255)
T ss_pred             HHcCCcCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCCHHH-----------------------------------
Confidence            999999999999999999999999999999999999999988643                                   


Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCC
Q 004972          240 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  293 (721)
Q Consensus       240 A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~  293 (721)
                       ...+|+.++.....++++++..|.+.+..++.|+|+++++.+|++||+++.++
T Consensus       202 -~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~~kr~p~~~~  254 (255)
T PRK08150        202 -NFAVLNALPRIADMSADDGLFVESLMAAVAQSAPEAKERLRAFLEKKAAKVKP  254 (255)
T ss_pred             -HHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCCC
Confidence             23456778777778899999999999999999999999999999999887643

>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated

Probab=100.00  E-value=4.9e-47  Score=392.59  Aligned_cols=252  Identities=32%  Similarity=0.518  Sum_probs=225.6

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcCCCCchhhhhccCCCc
Q 004972            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD   78 (721)
Q Consensus         1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~   78 (721)
                      |+++.+.+++ +++|++||||||+ .|++|.+|+.+|.+++++++.|+++++|||||.| ++||+|+|++++..... ..
T Consensus         1 ~~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~-~~   78 (260)
T PRK05809          1 MELKNVILEK-EGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNE-EE   78 (260)
T ss_pred             CCcceEEEEE-eCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccCh-HH
Confidence            8899999999 7899999999996 6999999999999999999999999999999999 89999999999854221 11


Q ss_pred             ccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHH
Q 004972           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSK  155 (721)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~  155 (721)
                      ...+......++ +.+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|+   +++|++++|..+
T Consensus        79 ~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~  157 (260)
T PRK05809         79 GRKFGLLGNKVF-RKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGK  157 (260)
T ss_pred             HHHHHHHHHHHH-HHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHH
Confidence            111222334455 6789999999999999999999999999999999999999999999999997   789999999999


Q ss_pred             HHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004972          156 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  235 (721)
Q Consensus       156 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (721)
                      |++|+++|++++|+||+++||||+|+|++++++++.++++++++.+|..                               
T Consensus       158 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a-------------------------------  206 (260)
T PRK05809        158 AKELIYTGDMINAEEALRIGLVNKVVEPEKLMEEAKALANKIAANAPIA-------------------------------  206 (260)
T ss_pred             HHHHHHhCCCCCHHHHHHcCCCCcccChHHHHHHHHHHHHHHHhCCHHH-------------------------------
Confidence            9999999999999999999999999999999999999999999987642                               


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          236 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       236 ~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                           ...+|+.++.+...++.++++.|.+.+..++.|+|+++++++|++||++++
T Consensus       207 -----~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~~  257 (260)
T PRK05809        207 -----VKLCKDAINRGMQVDIDTAVAIEAEDFGECFSTEDQTEGMTAFVEKREKNF  257 (260)
T ss_pred             -----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence                 335677888888888999999999999999999999999999999998764

>PRK08140 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.7e-47  Score=392.01  Aligned_cols=252  Identities=25%  Similarity=0.365  Sum_probs=222.4

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCC--
Q 004972            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG--   77 (721)
Q Consensus         1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~--   77 (721)
                      |+++.+.++. +++|++||||||+ .|++|.+|+.+|.+++++++ |+++++|||||.|++||+|+|++++.......  
T Consensus         1 ~~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~   78 (262)
T PRK08140          1 MMYETILLAI-EAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMP   78 (262)
T ss_pred             CCCceEEEEe-ECCEEEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccch
Confidence            8888899999 7899999999995 79999999999999999999 99999999999999999999999875321111  


Q ss_pred             cc-cccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCH
Q 004972           78 DV-SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGL  153 (721)
Q Consensus        78 ~~-~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~  153 (721)
                      .. ..+......++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|++++|.
T Consensus        79 ~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~  157 (262)
T PRK08140         79 DLGESIETFYNPLV-RRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGM  157 (262)
T ss_pred             hhHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCH
Confidence            00 01111223344 6688999999999999999999999999999999999999999999999997   7899999999


Q ss_pred             HHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHH
Q 004972          154 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK  233 (721)
Q Consensus       154 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (721)
                      .+|++|+++|++++|+||+++||||+|||++++++++.++++++++.+|..                             
T Consensus       158 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a-----------------------------  208 (262)
T PRK08140        158 ARALGLALLGEKLSAEQAEQWGLIWRVVDDAALADEAQQLAAHLATQPTRG-----------------------------  208 (262)
T ss_pred             HHHHHHHHcCCCcCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCCHHH-----------------------------
Confidence            999999999999999999999999999999999999999999999987642                             


Q ss_pred             hCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          234 TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       234 ~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                             ...+|+.++.....++.++++.|.+.+..++.|+|+++++.+|++||++.+
T Consensus       209 -------~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~~  259 (262)
T PRK08140        209 -------LALIKQAMNASATNTLDAQLDLERDLQREAGRSADYAEGVSAFLEKRAPRF  259 (262)
T ss_pred             -------HHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence                   235577788777788999999999999999999999999999999998764

>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated

Probab=100.00  E-value=8.1e-47  Score=390.97  Aligned_cols=255  Identities=20%  Similarity=0.273  Sum_probs=219.7

Q ss_pred             CC-CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCc
Q 004972            1 MA-APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD   78 (721)
Q Consensus         1 m~-~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~   78 (721)
                      |+ ++++.++.++++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++........
T Consensus         1 ~~~~~~l~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~   80 (265)
T PRK05674          1 MSDFQTIELIRDPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDY   80 (265)
T ss_pred             CCCcceEEEEEcCCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccc
Confidence            55 8899999844789999999995 699999999999999999999999999999999999999999998754211110


Q ss_pred             ccc--cchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc--ccccccccCHH
Q 004972           79 VSL--MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG--TQRLPRLVGLS  154 (721)
Q Consensus        79 ~~~--~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~--~~~l~r~~G~~  154 (721)
                      ...  .......++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+  ..++++++|..
T Consensus        81 ~~~~~~~~~~~~~~-~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~~l~~~vG~~  159 (265)
T PRK05674         81 NTNLDDARELAELM-YNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISPFVVKAIGER  159 (265)
T ss_pred             hhhhHHHHHHHHHH-HHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHHHHHHHhCHH
Confidence            011  111233455 6688999999999999999999999999999999999999999999999997  55699999999


Q ss_pred             HHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004972          155 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  234 (721)
Q Consensus       155 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (721)
                      +|++|++||++++|+||+++||||+|||++++.+++.++++++++.+|..+                             
T Consensus       160 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~-----------------------------  210 (265)
T PRK05674        160 AARRYALTAERFDGRRARELGLLAESYPAAELEAQVEAWIANLLLNSPQAL-----------------------------  210 (265)
T ss_pred             HHHHHHHhCcccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHhcCHHHH-----------------------------
Confidence            999999999999999999999999999999999999999999999887432                             


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004972          235 APNMPQHQACLDVIEEGIVHGGYSGVLK-EAKVFKELVMLDTSRGLVHVFFAQRATSKV  292 (721)
Q Consensus       235 ~~~~~A~~~~~~~i~~~~~~~~~~~l~~-E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  292 (721)
                             ..+|+.++.....++.+++.. |.+.+..++.|+|+++++++|++||++.+.
T Consensus       211 -------~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~e~~~af~~kr~p~~~  262 (265)
T PRK05674        211 -------RASKDLLREVGDGELSPALRRYCENAIARIRVSAEGQEGLRAFLEKRTPAWQ  262 (265)
T ss_pred             -------HHHHHHHHHhhccChhHHHHHHHHHHHHHHhcCHHHHHHHHHHHccCCCCCC
Confidence                   345677777777788888765 556788899999999999999999987753

>PRK09674 enoyl-CoA hydratase-isomerase; Provisional

Probab=100.00  E-value=1.4e-46  Score=387.54  Aligned_cols=248  Identities=30%  Similarity=0.442  Sum_probs=221.0

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcc
Q 004972            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (721)
Q Consensus         1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   79 (721)
                      ||  .+.+++ +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.....   .
T Consensus         1 ~~--~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~---~   74 (255)
T PRK09674          1 MS--ELLVSR-QQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDL---A   74 (255)
T ss_pred             Cc--eEEEEe-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccch---h
Confidence            55  478888 7899999999996 699999999999999999999999999999999999999999998754211   1


Q ss_pred             cccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHH
Q 004972           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKA  156 (721)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a  156 (721)
                      ..+......++ +.+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|+|++|..++
T Consensus        75 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a  153 (255)
T PRK09674         75 ATLNDPRPQLW-QRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLA  153 (255)
T ss_pred             hhHHHHHHHHH-HHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHH
Confidence            11112233455 6689999999999999999999999999999999999999999999999997   7899999999999


Q ss_pred             HHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004972          157 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  236 (721)
Q Consensus       157 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (721)
                      ++|+++|++++|+||+++||||+|||++++++++.++++++++.+|..                                
T Consensus       154 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a--------------------------------  201 (255)
T PRK09674        154 SQMVLTGESITAQQAQQAGLVSEVFPPELTLERALQLASKIARHSPLA--------------------------------  201 (255)
T ss_pred             HHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHhCCHHH--------------------------------
Confidence            999999999999999999999999999999999999999999988643                                


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          237 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       237 ~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                          ...+|+.++.....++.++++.|.+.+..++.++++++++++|++||++++
T Consensus       202 ----~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~i~af~~kr~p~~  252 (255)
T PRK09674        202 ----LRAAKQALRQSQEVDLQAGLAQERQLFTLLAATEDRHEGISAFLEKRTPDF  252 (255)
T ss_pred             ----HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCC
Confidence                335577788877888999999999999999999999999999999988764

>PRK06563 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.2e-46  Score=388.41  Aligned_cols=248  Identities=25%  Similarity=0.348  Sum_probs=216.5

Q ss_pred             EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccch
Q 004972            6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD   84 (721)
Q Consensus         6 v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   84 (721)
                      |.++. +++|++||||||+ .|++|.+|+++|.++++++++|+++|+|||||.|++||+|+|++++....... ...+..
T Consensus         1 ~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~-~~~~~~   78 (255)
T PRK06563          1 VSRER-RGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAG-GFPFPE   78 (255)
T ss_pred             CeEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccc-hhhhhh
Confidence            35677 6899999999995 79999999999999999999999999999999999999999999985421111 111111


Q ss_pred             HHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHHHHH
Q 004972           85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMML  161 (721)
Q Consensus        85 ~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~l~l  161 (721)
                      ...+.+...+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|+   +++|++++|..+|++|++
T Consensus        79 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l  158 (255)
T PRK06563         79 GGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLL  158 (255)
T ss_pred             hhhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHHHH
Confidence            12233323478999999999999999999999999999999999999999999999996   789999999999999999


Q ss_pred             cCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChhH
Q 004972          162 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH  241 (721)
Q Consensus       162 tg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~  241 (721)
                      ||++++|+||+++||||+|+|++++.+++.++++++++.+|.++                                    
T Consensus       159 tg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~------------------------------------  202 (255)
T PRK06563        159 TGDEFDAQEALRLGLVQEVVPPGEQLERAIELAERIARAAPLGV------------------------------------  202 (255)
T ss_pred             cCCCcCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHhcCHHHH------------------------------------
Confidence            99999999999999999999999999999999999998876432                                    


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          242 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       242 ~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                      ..+|++++.....++.++++.|...+..++.++|+++++++|++||++..
T Consensus       203 ~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~  252 (255)
T PRK06563        203 QATLASARAAVREGEAAAAAQLPPELRPLFTSEDAKEGVQAFLERRPARF  252 (255)
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence            34567777777788999999999999999999999999999999998764

>PRK08138 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.6e-46  Score=386.87  Aligned_cols=248  Identities=32%  Similarity=0.459  Sum_probs=220.8

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCccccc
Q 004972            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM   82 (721)
Q Consensus         4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (721)
                      +++.++.++++|++||||||+ .|++|.+|+.+|.++++.+++|+++|+|||||.|++||+|+|++++.....   ...+
T Consensus         7 ~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~---~~~~   83 (261)
T PRK08138          7 DVVLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGA---IEMY   83 (261)
T ss_pred             CCEEEEEccCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccch---hHHH
Confidence            567888756889999999996 699999999999999999999999999999999999999999998764211   1112


Q ss_pred             chHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHHH
Q 004972           83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEM  159 (721)
Q Consensus        83 ~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~l  159 (721)
                      ....++++ +.+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|+   +++|+|++|..++++|
T Consensus        84 ~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l  162 (261)
T PRK08138         84 LRHTERYW-EAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRM  162 (261)
T ss_pred             HHHHHHHH-HHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHHHHHH
Confidence            22334455 6688999999999999999999999999999999999999999999999997   7899999999999999


Q ss_pred             HHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCCh
Q 004972          160 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP  239 (721)
Q Consensus       160 ~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (721)
                      +++|++++|+||+++||||+|||++++.+++.++++++++.++.                                    
T Consensus       163 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~------------------------------------  206 (261)
T PRK08138        163 ALTGCMVPAPEALAIGLVSEVVEDEQTLPRALELAREIARMPPL------------------------------------  206 (261)
T ss_pred             HHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHHhCCHH------------------------------------
Confidence            99999999999999999999999999999999999999987753                                    


Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          240 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       240 A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                      ++..+|++++.....++.++++.|.+.+..++.|+|+++++++|++||++++
T Consensus       207 a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~af~~kr~~~~  258 (261)
T PRK08138        207 ALAQIKEVVLAGADAPLDAALALERKAFQLLFDSEDQKEGMDAFLEKRKPAY  258 (261)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence            2335677888877888999999999999999999999999999999998764

>PRK05981 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.8e-46  Score=389.66  Aligned_cols=253  Identities=24%  Similarity=0.326  Sum_probs=223.1

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCC-CceEEEEEeCCCCCcCCCCchhhhhccCCC-
Q 004972            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRD-DVKAIVLTGNGGRFSGGFDINVFQKVHGAG-   77 (721)
Q Consensus         1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~-~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~-   77 (721)
                      |+++.+.+++ +++|++||||||+ .|++|.+|+++|.++++.++.|+ ++++|||||.|++||+|+|++++....... 
T Consensus         1 ~~~~~v~~~~-~~~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~   79 (266)
T PRK05981          1 MQFKKVTLDF-DGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESD   79 (266)
T ss_pred             CCcceEEEEe-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhccccccc
Confidence            8899999999 7899999999995 69999999999999999999876 499999999999999999999975422111 


Q ss_pred             ---c-ccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccc
Q 004972           78 ---D-VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRL  150 (721)
Q Consensus        78 ---~-~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~  150 (721)
                         . ...+....+.++ +.+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+   +++++++
T Consensus        80 ~~~~~~~~~~~~~~~~~-~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~  158 (266)
T PRK05981         80 SGGDAGAALETAYHPFL-RRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRL  158 (266)
T ss_pred             ccchhHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHH
Confidence               0 011112234455 6789999999999999999999999999999999999999999999999997   7899999


Q ss_pred             cCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHH
Q 004972          151 VGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQ  230 (721)
Q Consensus       151 ~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (721)
                      +|..+|++|+++|++++|+||+++||||+|+|++++++++.++++++++.++..                          
T Consensus       159 vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a--------------------------  212 (266)
T PRK05981        159 VGKARAMELSLLGEKLPAETALQWGLVNRVVDDAELMAEAMKLAHELANGPTVA--------------------------  212 (266)
T ss_pred             hHHHHHHHHHHhCCCcCHHHHHHcCCceEeeCHhHHHHHHHHHHHHHHcCCHHH--------------------------
Confidence            999999999999999999999999999999999999999999999999877532                          


Q ss_pred             HHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          231 AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       231 ~~~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                                ...+|++++.....++.++++.|...+..++.|+|+++++.+|++||++++
T Consensus       213 ----------~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~~  263 (266)
T PRK05981        213 ----------LGLIRKLYWDSPENDFEEQLNLEREAQRIAGKTEDFKEGVGAFLQKRPAQF  263 (266)
T ss_pred             ----------HHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence                      234567777777788999999999999999999999999999999998775

>PRK07657 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.9e-46  Score=388.00  Aligned_cols=252  Identities=29%  Similarity=0.473  Sum_probs=222.8

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCC-CCcCCCCchhhhhccCCCc
Q 004972            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG-RFSGGFDINVFQKVHGAGD   78 (721)
Q Consensus         1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~-~F~aG~Dl~~~~~~~~~~~   78 (721)
                      |+ ++|.+++.+++|++||||||+ .|++|.+|+.+|.+++++++.|+++++|||||.|+ +||+|+|++++..... ..
T Consensus         1 ~~-~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~-~~   78 (260)
T PRK07657          1 ML-QNISVDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNE-EQ   78 (260)
T ss_pred             CC-ceEEEEEccCCEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCCh-hh
Confidence            77 578888646899999999996 79999999999999999999999999999999994 9999999998754211 11


Q ss_pred             ccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHH
Q 004972           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSK  155 (721)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~  155 (721)
                      ...+......++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|++++|..+
T Consensus        79 ~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~  157 (260)
T PRK07657         79 VRHAVSLIRTTM-EMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGR  157 (260)
T ss_pred             HHHHHHHHHHHH-HHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHHH
Confidence            112222334555 6689999999999999999999999999999999999999999999999997   789999999999


Q ss_pred             HHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004972          156 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  235 (721)
Q Consensus       156 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (721)
                      |++|+++|++++|+||+++||||+|+|++++++++.++++++++.++.+                               
T Consensus       158 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a-------------------------------  206 (260)
T PRK07657        158 AKELIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAIEIAEKIASNGPIA-------------------------------  206 (260)
T ss_pred             HHHHHHhCCCCCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCCHHH-------------------------------
Confidence            9999999999999999999999999999999999999999999987643                               


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          236 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       236 ~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                           ...+|+.++.....++.++++.|.+.+..++.|+|+++++++|+++|++++
T Consensus       207 -----~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~~r~~~~  257 (260)
T PRK07657        207 -----VRQAKEAISNGIQVDLHTGLQIEKQAYEGTIPTKDRLEGLQAFKEKRKPMY  257 (260)
T ss_pred             -----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCCC
Confidence                 335577788777788999999999999999999999999999999998774

>PRK09245 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.3e-46  Score=388.88  Aligned_cols=252  Identities=26%  Similarity=0.344  Sum_probs=220.7

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCH-HHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCC-
Q 004972            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAI-PIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG-   77 (721)
Q Consensus         1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~-~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~-   77 (721)
                      || +.+.+++ +++|++||||||+ .|++|. +|+++|.+++++++.|+++|+|||+|.|++||+|+|++++....... 
T Consensus         1 m~-~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~   78 (266)
T PRK09245          1 MT-DFLLVER-DGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFG   78 (266)
T ss_pred             CC-CceEEEE-ECCEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhcccccc
Confidence            66 4588888 7899999999995 699995 99999999999999999999999999999999999999985421110 


Q ss_pred             -cc----cccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---cccccc
Q 004972           78 -DV----SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPR  149 (721)
Q Consensus        78 -~~----~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r  149 (721)
                       ..    ..+......++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   ++++++
T Consensus        79 ~~~~~~~~~~~~~~~~~~-~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~  157 (266)
T PRK09245         79 GSPADIRQGYRHGIQRIP-LALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPR  157 (266)
T ss_pred             ccchhHHHHHHHHHHHHH-HHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHH
Confidence             00    01111123444 5688999999999999999999999999999999999999999999999997   889999


Q ss_pred             ccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHH
Q 004972          150 LVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARL  229 (721)
Q Consensus       150 ~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (721)
                      ++|..+|++|+++|++++|+||+++||||+|+|++++++++.++++++++.||.++                        
T Consensus       158 ~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~------------------------  213 (266)
T PRK09245        158 IIGMARAAEMAFTGDAIDAATALEWGLVSRVVPADQLLPAARALAERIAANPPHAL------------------------  213 (266)
T ss_pred             HhhHHHHHHHHHcCCCcCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHH------------------------
Confidence            99999999999999999999999999999999999999999999999999887532                        


Q ss_pred             HHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          230 QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       230 ~~~~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                                  ..+|++++.....++++.+..|.+.+..++.|+|+++++++|++||++.+
T Consensus       214 ------------~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~  263 (266)
T PRK09245        214 ------------RLTKRLLREGQHASLDTLLELSAAYQALAHHTADHREAVDAFLEKRPPVF  263 (266)
T ss_pred             ------------HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHHcCCCCCC
Confidence                        34567777777788899999999999999999999999999999998764

>PLN02888 enoyl-CoA hydratase

Probab=100.00  E-value=4.3e-46  Score=385.25  Aligned_cols=250  Identities=28%  Similarity=0.458  Sum_probs=220.3

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccc
Q 004972            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL   81 (721)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   81 (721)
                      .+.+.++..+++|++||||||+ .|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++.+.....    
T Consensus         8 ~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~----   83 (265)
T PLN02888          8 ENLILVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKGD----   83 (265)
T ss_pred             CCeEEEEeccCCEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccch----
Confidence            4567787546889999999995 79999999999999999999999999999999999999999999875321111    


Q ss_pred             cchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHH
Q 004972           82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIE  158 (721)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~  158 (721)
                      ......+.+ ..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|+   +++|++++|..+|++
T Consensus        84 ~~~~~~~~~-~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~  162 (265)
T PLN02888         84 VKDVETDPV-AQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANRARE  162 (265)
T ss_pred             hhHHHHHHH-HHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHHHHHH
Confidence            111223455 5688999999999999999999999999999999999999999999999997   789999999999999


Q ss_pred             HHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCC
Q 004972          159 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM  238 (721)
Q Consensus       159 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (721)
                      |+++|++++|+||+++||||+|||++++.+++.++++++++.+|..                                  
T Consensus       163 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a----------------------------------  208 (265)
T PLN02888        163 VSLTAMPLTAETAERWGLVNHVVEESELLKKAREVAEAIIKNNQGM----------------------------------  208 (265)
T ss_pred             HHHhCCccCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCCHHH----------------------------------
Confidence            9999999999999999999999999999999999999999988643                                  


Q ss_pred             hhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHhhhhcCCC
Q 004972          239 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELV--MLDTSRGLVHVFFAQRATSKVP  293 (721)
Q Consensus       239 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~--~s~~~~~~i~aF~~~r~~~~~~  293 (721)
                        ...+|++++.....++++++..|.+.+..++  .++|+++++++|++||+++|.|
T Consensus       209 --~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~e~~~af~ekr~~~~~~  263 (265)
T PLN02888        209 --VLRYKSVINDGLKLDLGHALQLEKERAHDYYNGMTKEQFQKMQEFIAGRSSKKPS  263 (265)
T ss_pred             --HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCCC
Confidence              3355778887778889999999999888886  5999999999999999998865

>PRK07468 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.3e-46  Score=386.39  Aligned_cols=253  Identities=23%  Similarity=0.330  Sum_probs=218.0

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcc
Q 004972            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (721)
Q Consensus         1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   79 (721)
                      |+++.+.+++++++|++||||||+ .|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++.........
T Consensus         1 ~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~   80 (262)
T PRK07468          1 MMFETIRIAVDARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRA   80 (262)
T ss_pred             CCcceEEEEEcCCcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchh
Confidence            677888998843689999999995 7999999999999999999999999999999999999999999987532111100


Q ss_pred             c--ccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHH
Q 004972           80 S--LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLS  154 (721)
Q Consensus        80 ~--~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~  154 (721)
                      .  ........++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   ++ +.+++|..
T Consensus        81 ~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~-~~~~vG~~  158 (262)
T PRK07468         81 TRIEEARRLAMML-KALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPY-VVARMGEA  158 (262)
T ss_pred             hHHHHHHHHHHHH-HHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhh-HHhhccHH
Confidence            0  1112233445 6789999999999999999999999999999999999999999999999997   54 55669999


Q ss_pred             HHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004972          155 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  234 (721)
Q Consensus       155 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (721)
                      ++++|+++|++++|+||+++||||+|+|++++.+++.++++++++.+|..+                             
T Consensus       159 ~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~-----------------------------  209 (262)
T PRK07468        159 NARRVFMSARLFDAEEAVRLGLLSRVVPAERLDAAVEAEVTPYLSCAPGAV-----------------------------  209 (262)
T ss_pred             HHHHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCHHHH-----------------------------
Confidence            999999999999999999999999999999999999999999999876432                             


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          235 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       235 ~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                             ..+|++++.......+++++.|...+..++.|+|+++++++|++||++++
T Consensus       210 -------~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~~  259 (262)
T PRK07468        210 -------AAAKALVRALGAPIDEAVIDATIEALADTWETEEAREGIAAFFDKRAPAW  259 (262)
T ss_pred             -------HHHHHHHHhhhccChHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCC
Confidence                   34566776665556788899999999999999999999999999998775

>PLN02600 enoyl-CoA hydratase

Probab=100.00  E-value=2.1e-46  Score=385.00  Aligned_cols=242  Identities=29%  Similarity=0.456  Sum_probs=215.1

Q ss_pred             cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC-CCCCcCCCCchhhhhccCCCcccccchHHHHH
Q 004972           12 NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-GGRFSGGFDINVFQKVHGAGDVSLMPDVSVEL   89 (721)
Q Consensus        12 ~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~   89 (721)
                      +++|++||||||+ .|+||.+|+++|.+++++++.|+++|+|||||. |++||+|+|++++..... .....+......+
T Consensus         2 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~-~~~~~~~~~~~~~   80 (251)
T PLN02600          2 DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSP-SEVQKFVNSLRST   80 (251)
T ss_pred             CCcEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccCh-HHHHHHHHHHHHH
Confidence            5789999999995 699999999999999999999999999999998 589999999998754211 1111222333445


Q ss_pred             HHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHHHHHcCCCc
Q 004972           90 VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSI  166 (721)
Q Consensus        90 ~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~l~ltg~~~  166 (721)
                      + ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|++++|..++++|++||+++
T Consensus        81 ~-~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~  159 (251)
T PLN02600         81 F-SSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRI  159 (251)
T ss_pred             H-HHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCcc
Confidence            5 5688999999999999999999999999999999999999999999999997   78999999999999999999999


Q ss_pred             CHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChhHHHHHH
Q 004972          167 TSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLD  246 (721)
Q Consensus       167 ~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  246 (721)
                      +|+||+++||||+|||++++++++.++++++++.+|..                                    ...+|+
T Consensus       160 ~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~~p~a------------------------------------~~~~K~  203 (251)
T PLN02600        160 GAREAASMGLVNYCVPAGEAYEKALELAQEINQKGPLA------------------------------------IKMAKK  203 (251)
T ss_pred             CHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhCCHHH------------------------------------HHHHHH
Confidence            99999999999999999999999999999999988643                                    235577


Q ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          247 VIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       247 ~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                      +++.....++.++++.|.+.+..++.++|+++++++|++||++.+
T Consensus       204 ~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~~  248 (251)
T PLN02600        204 AINEGSEVDMASGLEIEEECYEQVLKTKDRLEGLAAFAEKRKPVY  248 (251)
T ss_pred             HHHHHccCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCC
Confidence            888777788999999999999999999999999999999998764

>PRK03580 carnitinyl-CoA dehydratase; Provisional

Probab=100.00  E-value=3.3e-46  Score=386.11  Aligned_cols=250  Identities=23%  Similarity=0.334  Sum_probs=218.3

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcCCCCchhhhhccCCCcc
Q 004972            1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDV   79 (721)
Q Consensus         1 m~~~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~   79 (721)
                      ||. .+.+++ +++|++||||||+.|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++.......  
T Consensus         1 ~~~-~i~~~~-~~~v~~itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~--   76 (261)
T PRK03580          1 MSE-SLHTTR-NGSILEITLDRPKANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPD--   76 (261)
T ss_pred             CCc-eEEEEE-ECCEEEEEECCccccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcch--
Confidence            663 588888 78999999999988999999999999999999999999999999998 6999999999875422111  


Q ss_pred             cccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHH
Q 004972           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKA  156 (721)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a  156 (721)
                      ..+.......+ +.+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|+   +++|++++|..++
T Consensus        77 ~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a  155 (261)
T PRK03580         77 ADFGPGGFAGL-TEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIA  155 (261)
T ss_pred             hhhhhhhhHHH-HHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHHH
Confidence            11111122344 5688999999999999999999999999999999999999999999999997   7799999999999


Q ss_pred             HHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004972          157 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  236 (721)
Q Consensus       157 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (721)
                      ++++++|++++|+||+++||||+|+|++++.+++.++++++++.+|..+                               
T Consensus       156 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~-------------------------------  204 (261)
T PRK03580        156 NEMVMTGRRMDAEEALRWGIVNRVVPQAELMDRARELAQQLVNSAPLAI-------------------------------  204 (261)
T ss_pred             HHHHHhCCccCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhCCHHHH-------------------------------
Confidence            9999999999999999999999999999999999999999999886432                               


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHH----HHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          237 NMPQHQACLDVIEEGIVHGGYSGVLKEAK----VFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       237 ~~~A~~~~~~~i~~~~~~~~~~~l~~E~~----~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                           ..+|+.++.....+++++++.|..    .+..++.|+|+++++++|++||++++
T Consensus       205 -----~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~d~~e~~~af~ekr~~~~  258 (261)
T PRK03580        205 -----AALKEIYRETSEMPVEEAYRYIRSGVLKHYPSVLHSEDALEGPRAFAEKRDPVW  258 (261)
T ss_pred             -----HHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHhcCccHHHHHHHHhcCCCCCC
Confidence                 345677777777888899888874    78889999999999999999998764

>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB

Probab=100.00  E-value=2.5e-46  Score=386.14  Aligned_cols=247  Identities=26%  Similarity=0.368  Sum_probs=216.7

Q ss_pred             EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCC-Ccc-ccc
Q 004972            6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA-GDV-SLM   82 (721)
Q Consensus         6 v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~-~~~-~~~   82 (721)
                      +.+++ +++|++||||||+ .|++|.+|+.+|.++++++++|+ +++|||||.|++||+|+|++++...... ... ..+
T Consensus         1 ~~~e~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   78 (256)
T TIGR02280         1 ILSAL-EAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTI   78 (256)
T ss_pred             CeEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccccchhHHHHH
Confidence            35677 7899999999995 79999999999999999999988 9999999999999999999998542111 100 111


Q ss_pred             chHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHHH
Q 004972           83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEM  159 (721)
Q Consensus        83 ~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~l  159 (721)
                      ......++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|++++|..+|++|
T Consensus        79 ~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l  157 (256)
T TIGR02280        79 ETFYNPLV-RRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGL  157 (256)
T ss_pred             HHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHH
Confidence            11123344 6688999999999999999999999999999999999999999999999996   7899999999999999


Q ss_pred             HHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCCh
Q 004972          160 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP  239 (721)
Q Consensus       160 ~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (721)
                      +++|++++|+||+++||||+|+|++++++++.++++++++.+|..                                   
T Consensus       158 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~-----------------------------------  202 (256)
T TIGR02280       158 AMLGEKLDARTAASWGLIWQVVDDAALMDEAQALAVHLAAQPTRG-----------------------------------  202 (256)
T ss_pred             HHcCCCCCHHHHHHcCCcceeeChHHHHHHHHHHHHHHHhCCHHH-----------------------------------
Confidence            999999999999999999999999999999999999999988642                                   


Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          240 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       240 A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                       ...+|+.++.....++.++++.|.+.+..++.|+|+++++++|++||++++
T Consensus       203 -~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~  253 (256)
T TIGR02280       203 -LALTKRAIQAAATNSLDTQLDLERDLQRELGRSADYAEGVTAFLDKRNPQF  253 (256)
T ss_pred             -HHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHcCCCCCC
Confidence             235577888777788999999999999999999999999999999998775

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).

>PRK07799 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.1e-46  Score=386.12  Aligned_cols=250  Identities=25%  Similarity=0.345  Sum_probs=218.9

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccc
Q 004972            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL   81 (721)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   81 (721)
                      ++.+.+++ +++|++||||||+ .|++|.+|+++|.+++++++.|+++++|||||.|++||+|+|++++...........
T Consensus         4 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   82 (263)
T PRK07799          4 GPHALVEQ-RGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKD   82 (263)
T ss_pred             CceEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhh
Confidence            46788888 7899999999995 699999999999999999999999999999999999999999999864321111110


Q ss_pred             --c-chHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHH
Q 004972           82 --M-PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSK  155 (721)
Q Consensus        82 --~-~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~  155 (721)
                        + .... ..+ ..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|+|++|..+
T Consensus        83 ~~~~~~~~-~~~-~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~  160 (263)
T PRK07799         83 GSYDPSRI-DAL-LKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTV  160 (263)
T ss_pred             hhhhhhHH-HHH-HHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHH
Confidence              0 0111 123 2367899999999999999999999999999999999999999999999997   789999999999


Q ss_pred             HHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004972          156 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  235 (721)
Q Consensus       156 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (721)
                      |++|+++|++++|+||+++||||+|||++++++++.++++++++.+|.+                               
T Consensus       161 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~~~a-------------------------------  209 (263)
T PRK07799        161 ACDLLLTGRHITAAEAKEIGLIGHVVPDGQALDKALELAELINANGPLA-------------------------------  209 (263)
T ss_pred             HHHHHHcCCCCCHHHHHHcCCccEecCcchHHHHHHHHHHHHHhcChHH-------------------------------
Confidence            9999999999999999999999999999999999999999999987643                               


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          236 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       236 ~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                           ...+|+.++.....++.++++.|.+.+..++.++++++++++|++||++++
T Consensus       210 -----~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~~  260 (263)
T PRK07799        210 -----VQAILRTIRETEGMHENEAFKIDTKIGIPVFLSEDAKEGPRAFAEKRAPNF  260 (263)
T ss_pred             -----HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCCC
Confidence                 235577888777888999999999999999999999999999999988764

>PRK06210 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.9e-46  Score=388.45  Aligned_cols=253  Identities=27%  Similarity=0.369  Sum_probs=222.4

Q ss_pred             CCCCcEEEEEecC-cEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCc
Q 004972            1 MAAPRVTMEVGND-GVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD   78 (721)
Q Consensus         1 m~~~~v~~~~~~~-~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~   78 (721)
                      |.++.+.+++ ++ +|++||||||+ .|++|.+|+++|.++++.++.|+++++|||||.|++||+|+|++++........
T Consensus         2 ~~~~~i~~~~-~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~   80 (272)
T PRK06210          2 MAYDAVLYEV-ADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDG   80 (272)
T ss_pred             CCcceEEEEE-CCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCcccc
Confidence            7889999999 67 99999999995 799999999999999999999999999999999999999999998754221110


Q ss_pred             c-----cccch----HHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccc
Q 004972           79 V-----SLMPD----VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQR  146 (721)
Q Consensus        79 ~-----~~~~~----~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~  146 (721)
                      .     ..+..    ..++.+ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~  159 (272)
T PRK06210         81 RRDTDVRPFVGNRRPDYQTRY-HFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWI  159 (272)
T ss_pred             cccccchhhhhhhhhhHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhh
Confidence            0     00100    123344 5688999999999999999999999999999999999999999999999997   789


Q ss_pred             cccccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhc-CchhhhhhhccCCCCCcHHHHHHHH
Q 004972          147 LPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR-RKPWIRSLHRTDKLGSLSEAREVLK  225 (721)
Q Consensus       147 l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~  225 (721)
                      |+|++|..++++|+++|++++|+||+++||||+|+|++++++++.++++++++. +|.+                     
T Consensus       160 l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~p~a---------------------  218 (272)
T PRK06210        160 LPRLVGHANALDLLLSARTFYAEEALRLGLVNRVVPPDELMERTLAYAEDLARNVSPAS---------------------  218 (272)
T ss_pred             hHhhhCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCCHHH---------------------
Confidence            999999999999999999999999999999999999999999999999999985 5532                     


Q ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          226 LARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       226 ~~~~~~~~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                                     ...+|++++.....++.++++.|...+..++.++++++++++|++||++.+
T Consensus       219 ---------------~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~  269 (272)
T PRK06210        219 ---------------MAVIKRQLYEDAFQTLAEATARANREMHESLQRPDFIEGVASFLEKRPPRF  269 (272)
T ss_pred             ---------------HHHHHHHHHhcccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCC
Confidence                           335577888877788999999999999999999999999999999998765

>PRK06494 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.7e-46  Score=385.30  Aligned_cols=249  Identities=30%  Similarity=0.414  Sum_probs=218.8

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcCCCCchhhhhccCCCc
Q 004972            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD   78 (721)
Q Consensus         1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~   78 (721)
                      |+++.+.+++ +++|++||||||+ .|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++....... 
T Consensus         1 ~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~-   78 (259)
T PRK06494          1 MALPFSTVER-KGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRG-   78 (259)
T ss_pred             CCCceeEEEe-ECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcch-
Confidence            8889999998 7899999999996 6999999999999999999999999999999998 6999999999875422111 


Q ss_pred             ccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHH
Q 004972           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSK  155 (721)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~  155 (721)
                        .....+..+. . +.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|++++|..+
T Consensus        79 --~~~~~~~~~~-~-~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~  154 (259)
T PRK06494         79 --WPESGFGGLT-S-RFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKR  154 (259)
T ss_pred             --hhhHHHHHHH-H-HhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHH
Confidence              0011122222 3 45899999999999999999999999999999999999999999999997   789999999999


Q ss_pred             HHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004972          156 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  235 (721)
Q Consensus       156 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (721)
                      |++|+++|++++|+||+++||||+|||++++++++.++++++++.+|..                               
T Consensus       155 a~~lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a-------------------------------  203 (259)
T PRK06494        155 AMGMILTGRRVTAREGLELGFVNEVVPAGELLAAAERWADDILACSPLS-------------------------------  203 (259)
T ss_pred             HHHHHHcCCcCCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhcCHHH-------------------------------
Confidence            9999999999999999999999999999999999999999999988643                               


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHH--HHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          236 PNMPQHQACLDVIEEGIVHGGYSGVLKE--AKVFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       236 ~~~~A~~~~~~~i~~~~~~~~~~~l~~E--~~~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                           ...+|+.++.....+++++++.|  ...+..++.++|+++++.+|++||++++
T Consensus       204 -----~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~eg~~af~~kr~p~~  256 (259)
T PRK06494        204 -----IRASKQAVYRGLEVSLEEAITAQRDYPAVEARRASQDYIEGPKAFAEKRPPRW  256 (259)
T ss_pred             -----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCCC
Confidence                 23456778877778899999999  5678899999999999999999987764

>PRK07511 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.6e-46  Score=385.33  Aligned_cols=252  Identities=23%  Similarity=0.297  Sum_probs=222.2

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCC--C
Q 004972            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA--G   77 (721)
Q Consensus         1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~--~   77 (721)
                      || ..+.+++ +++|++||||||+ .|++|.+|+.+|.+++++++.|+++|+|||+|.|+.||+|+|++++......  .
T Consensus         1 ~~-~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~   78 (260)
T PRK07511          1 MS-AELLSRR-EGSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPS   78 (260)
T ss_pred             CC-CeeEEEe-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccch
Confidence            77 3578888 7899999999995 7999999999999999999999999999999999999999999988542111  1


Q ss_pred             cccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHH
Q 004972           78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLS  154 (721)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~  154 (721)
                      ....+......++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|++++|..
T Consensus        79 ~~~~~~~~~~~~~-~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~  157 (260)
T PRK07511         79 VQAASIDGLHDWI-RAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQ  157 (260)
T ss_pred             hHHHHHHHHHHHH-HHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHH
Confidence            1112223334555 6688999999999999999999999999999999999999999999999997   78999999999


Q ss_pred             HHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004972          155 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  234 (721)
Q Consensus       155 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (721)
                      ++++|+++|++++|+||+++||||+|||++++.+++.++++++++.+|..                              
T Consensus       158 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~~------------------------------  207 (260)
T PRK07511        158 LATELLLEGKPISAERLHALGVVNRLAEPGQALAEALALADQLAAGSPNA------------------------------  207 (260)
T ss_pred             HHHHHHHhCCCCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCCHHH------------------------------
Confidence            99999999999999999999999999999999999999999999887542                              


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          235 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       235 ~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                            ...+|+.++.+...++.+++..|.+.+..++.|+|+++++++|+++|++++
T Consensus       208 ------~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~~f~~~r~~~~  258 (260)
T PRK07511        208 ------LARIKSLIADAPEATLAAQLEAERDHFVASLHHADALEGIAAFLEKRAPDY  258 (260)
T ss_pred             ------HHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhccCCCCC
Confidence                  234567788777888999999999999999999999999999999998764

>PRK08258 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.4e-46  Score=388.32  Aligned_cols=249  Identities=30%  Similarity=0.423  Sum_probs=220.1

Q ss_pred             cEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCC-C--ccc
Q 004972            5 RVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA-G--DVS   80 (721)
Q Consensus         5 ~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~-~--~~~   80 (721)
                      ++.++. +++|++||||||+ .|++|.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++...... .  ...
T Consensus        18 ~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~   96 (277)
T PRK08258         18 HFLWEV-DDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELL   96 (277)
T ss_pred             ceEEEE-ECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHH
Confidence            678888 7899999999994 7999999999999999999999999999999999999999999987432111 1  111


Q ss_pred             ccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCccc-c---ccccccccCHHHH
Q 004972           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIP-G---TQRLPRLVGLSKA  156 (721)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P-~---~~~l~r~~G~~~a  156 (721)
                      .+.....+++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++| +   +++|++++|..+|
T Consensus        97 ~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a  175 (277)
T PRK08258         97 AFTRMTGDLV-KAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRA  175 (277)
T ss_pred             HHHHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHHH
Confidence            1222233455 678999999999999999999999999999999999999999999999995 3   8899999999999


Q ss_pred             HHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004972          157 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  236 (721)
Q Consensus       157 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (721)
                      ++|+++|++++|+||+++||||+|+|++++++++.++++++++.+|..+                               
T Consensus       176 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~-------------------------------  224 (277)
T PRK08258        176 SELLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQALARRLAAGPTFAH-------------------------------  224 (277)
T ss_pred             HHHHHcCCCCCHHHHHHcCCCcEecCHHHHHHHHHHHHHHHHhCCHHHH-------------------------------
Confidence            9999999999999999999999999999999999999999999886432                               


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          237 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       237 ~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                           ..+|++++.....+++++++.|.+.+..++.|+|+++++++|++||++++
T Consensus       225 -----~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~  274 (277)
T PRK08258        225 -----GMTKTMLHQEWDMGLEEAIEAEAQAQAICMQTEDFRRAYEAFVAKRKPVF  274 (277)
T ss_pred             -----HHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence                 34577788777888999999999999999999999999999999998875

>PRK06127 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.7e-46  Score=386.43  Aligned_cols=251  Identities=24%  Similarity=0.387  Sum_probs=221.2

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcCCCCchhhhhccCCC-cc
Q 004972            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAG-DV   79 (721)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~-~~   79 (721)
                      .+.|.+++ +++|++||||||+ .|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++....... ..
T Consensus        10 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~   88 (269)
T PRK06127         10 TGKLLAEK-TGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAV   88 (269)
T ss_pred             CCceEEEE-ECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHH
Confidence            46788998 7899999999995 7999999999999999999999999999999998 7999999999875421111 11


Q ss_pred             cccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHH
Q 004972           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKA  156 (721)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a  156 (721)
                      ..+......++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|++++|..+|
T Consensus        89 ~~~~~~~~~~~-~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a  167 (269)
T PRK06127         89 AAYEQAVEAAQ-AALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAA  167 (269)
T ss_pred             HHHHHHHHHHH-HHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCHHHH
Confidence            12222233445 6689999999999999999999999999999999999999999999999987   7899999999999


Q ss_pred             HHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004972          157 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  236 (721)
Q Consensus       157 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (721)
                      ++|+++|++++|+||+++||||+|||++++++++.++|++++..+|..                                
T Consensus       168 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a--------------------------------  215 (269)
T PRK06127        168 KDLFYTARRFDAAEALRIGLVHRVTAADDLETALADYAATIAGNAPLT--------------------------------  215 (269)
T ss_pred             HHHHHcCCCCCHHHHHHcCCCCEeeCHHHHHHHHHHHHHHHHhCCHHH--------------------------------
Confidence            999999999999999999999999999999999999999999987642                                


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          237 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       237 ~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                          ...+|++++.....++++.++.|...+..++.|+|+++++.+|++||++.+
T Consensus       216 ----~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~~  266 (269)
T PRK06127        216 ----LRAAKRAIAELLKDEPERDMAACQALVAACFDSEDYREGRAAFMEKRKPVF  266 (269)
T ss_pred             ----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCC
Confidence                234567777777788999999999999999999999999999999998765

>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated

Probab=100.00  E-value=5.4e-46  Score=386.63  Aligned_cols=248  Identities=22%  Similarity=0.316  Sum_probs=215.4

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCC-c--
Q 004972            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG-D--   78 (721)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~-~--   78 (721)
                      |+++.+++ +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++....... .  
T Consensus         7 ~~~i~~~~-~~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   85 (275)
T PRK09120          7 WDTVKVEV-EDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEIL   85 (275)
T ss_pred             cccEEEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHH
Confidence            35688998 7899999999995 79999999999999999999999999999999999999999999875321111 0  


Q ss_pred             ccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHH
Q 004972           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSK  155 (721)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~  155 (721)
                      ..........++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|++++|..+
T Consensus        86 ~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~  164 (275)
T PRK09120         86 QERIRREAYGWW-RRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRD  164 (275)
T ss_pred             HHHHHHHHHHHH-HHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCHHH
Confidence            111111223445 6688999999999999999999999999999999999999999999999997   789999999999


Q ss_pred             HHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004972          156 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  235 (721)
Q Consensus       156 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (721)
                      |++|+++|++++|+||+++||||+|||++++++++.+++++|++.+|..                               
T Consensus       165 a~~llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a-------------------------------  213 (275)
T PRK09120        165 ALYYIMTGETFTGRKAAEMGLVNESVPLAQLRARTRELAAKLLEKNPVV-------------------------------  213 (275)
T ss_pred             HHHHHhcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHH-------------------------------
Confidence            9999999999999999999999999999999999999999999988643                               


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHH--HHHHHhCCH-HHHHHHHHHHHhhh
Q 004972          236 PNMPQHQACLDVIEEGIVHGGYSGVLKEAK--VFKELVMLD-TSRGLVHVFFAQRA  288 (721)
Q Consensus       236 ~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~--~~~~~~~s~-~~~~~i~aF~~~r~  288 (721)
                           ...+|++++.....++.+.++.|.+  .+..++.++ |+++++++|++||.
T Consensus       214 -----~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~d~~eg~~afl~kr~  264 (275)
T PRK09120        214 -----LRAAKDGFKRVRELTWDQAEDYLYAKLEQANSLDPEGGREEGLKQFLDDKS  264 (275)
T ss_pred             -----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhccc
Confidence                 2355778888778888898888764  456678998 89999999999988

>PRK08252 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.5e-46  Score=382.36  Aligned_cols=247  Identities=28%  Similarity=0.398  Sum_probs=216.9

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcc
Q 004972            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (721)
Q Consensus         1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   79 (721)
                      |+ +.+.+++ +++|++||||||+ .|++|.+|+++|.+++++++.|+++++|||||.|++||+|+|++++.......  
T Consensus         1 ~~-~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~--   76 (254)
T PRK08252          1 MS-DEVLVER-RGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGERPS--   76 (254)
T ss_pred             CC-ceEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccchh--
Confidence            55 4688888 7899999999996 69999999999999999999999999999999999999999999986421111  


Q ss_pred             cccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHH
Q 004972           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKA  156 (721)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a  156 (721)
                       ........++   ...+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|++++|..+|
T Consensus        77 -~~~~~~~~~~---~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a  152 (254)
T PRK08252         77 -IPGRGFGGLT---ERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIA  152 (254)
T ss_pred             -hhHHHHHHHH---HhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHH
Confidence             1111111222   24799999999999999999999999999999999999999999999997   8899999999999


Q ss_pred             HHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004972          157 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  236 (721)
Q Consensus       157 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (721)
                      ++|+++|++++|+||+++||||+|||++++++++.++++++++.+|.+                                
T Consensus       153 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a--------------------------------  200 (254)
T PRK08252        153 MELALTGDMLTAERAHELGLVNRLTEPGQALDAALELAERIAANGPLA--------------------------------  200 (254)
T ss_pred             HHHHHcCCccCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhCCHHH--------------------------------
Confidence            999999999999999999999999999999999999999999987643                                


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          237 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       237 ~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                          ...+|++++.....++.+.++.|...+..++.++|+++++.+|++||++++
T Consensus       201 ----~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~  251 (254)
T PRK08252        201 ----VAASKRIVVESGDWSEDEMFARQRELIAPVFTSADAKEGATAFAEKRAPVW  251 (254)
T ss_pred             ----HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence                234567777777778899999999999999999999999999999987764

>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional

Probab=100.00  E-value=5.7e-46  Score=386.37  Aligned_cols=254  Identities=19%  Similarity=0.253  Sum_probs=220.8

Q ss_pred             CCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC--CCCcCCCCchhhhhccCCCc-c
Q 004972            3 APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG--GRFSGGFDINVFQKVHGAGD-V   79 (721)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g--~~F~aG~Dl~~~~~~~~~~~-~   79 (721)
                      .+.+.+++.+++|++||||||+.|++|.+|+.+|.++++++++|+++|+|||||.|  ++||+|+|++++........ .
T Consensus        10 ~~~i~~~~~~~~Va~itlnr~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~   89 (278)
T PLN03214         10 TPGVRVDRRPGGIAVVWLAKEPVNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARY   89 (278)
T ss_pred             CCceEEEEcCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHH
Confidence            35688887448899999999988999999999999999999999999999999987  69999999998753211110 1


Q ss_pred             cccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCc-ccc---ccccccccCHHH
Q 004972           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGV-IPG---TQRLPRLVGLSK  155 (721)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl-~P~---~~~l~r~~G~~~  155 (721)
                      ..+......++ ..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|+ +|+   ++++++++|..+
T Consensus        90 ~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G~~~  168 (278)
T PLN03214         90 AEFWLTQTTFL-VRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVIDRKV  168 (278)
T ss_pred             HHHHHHHHHHH-HHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhcCHHH
Confidence            11111123344 5689999999999999999999999999999999999999999999999 586   789999999999


Q ss_pred             HHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004972          156 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  235 (721)
Q Consensus       156 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (721)
                      |++|+++|++++|+||+++||||+|||.+++++++.+++++++..++..+                              
T Consensus       169 a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~------------------------------  218 (278)
T PLN03214        169 AESLLLRGRLVRPAEAKQLGLIDEVVPAAALMEAAASAMERALKLPSAAR------------------------------  218 (278)
T ss_pred             HHHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHcCCHHHH------------------------------
Confidence            99999999999999999999999999999999999999999999876432                              


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCC
Q 004972          236 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  293 (721)
Q Consensus       236 ~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~  293 (721)
                            ..+|++++.....+++++++.|.+.+..++.|+|+++++++|++|.+.||.+
T Consensus       219 ------~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~aflek~~~~~~~  270 (278)
T PLN03214        219 ------AATKALLREEFSAAWEAYYEEEAKGGWKMLSEPSIIKALGGVMERLSSGKEK  270 (278)
T ss_pred             ------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccc
Confidence                  3456777777777889999999999999999999999999999999988865

>PRK06688 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=8e-46  Score=383.73  Aligned_cols=251  Identities=31%  Similarity=0.428  Sum_probs=223.1

Q ss_pred             CC-CCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCc
Q 004972            1 MA-APRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD   78 (721)
Q Consensus         1 m~-~~~v~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~   78 (721)
                      |+ .+.+.+++ +++|++|+|||| +.|++|.+|+++|.++++++++|+++++|||||.|++||+|+|++++....... 
T Consensus         1 ~~~~~~i~~~~-~~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~-   78 (259)
T PRK06688          1 MTMVTDLLVEL-EDGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKP-   78 (259)
T ss_pred             CCCCCceEEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcch-
Confidence            44 35688888 789999999999 579999999999999999999999999999999999999999999986532211 


Q ss_pred             ccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHH
Q 004972           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSK  155 (721)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~  155 (721)
                       ..+....++++ +.+.++|||+||+|||+|+|||++|+++|||||++++++|++||+++|++|+   ++++++++|..+
T Consensus        79 -~~~~~~~~~~~-~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~  156 (259)
T PRK06688         79 -PDELAPVNRFL-RAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRAR  156 (259)
T ss_pred             -HHHHHHHHHHH-HHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHH
Confidence             12233445566 6689999999999999999999999999999999999999999999999997   789999999999


Q ss_pred             HHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004972          156 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  235 (721)
Q Consensus       156 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (721)
                      |++|+++|++++|+||+++||||+++|++++++++.++++++++.++..                               
T Consensus       157 a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~i~~~~~~a-------------------------------  205 (259)
T PRK06688        157 AAEMLLLGEPLSAEEALRIGLVNRVVPAAELDAEADAQAAKLAAGPASA-------------------------------  205 (259)
T ss_pred             HHHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHH-------------------------------
Confidence            9999999999999999999999999999999999999999999887542                               


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          236 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       236 ~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                           ...+|+.++.....++++++..|.+.+..++.++++++++++|++||++++
T Consensus       206 -----~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~af~~~~~p~~  256 (259)
T PRK06688        206 -----LRYTKRAINAATLTELEEALAREAAGFGRLLRTPDFREGATAFIEKRKPDF  256 (259)
T ss_pred             -----HHHHHHHHHhhhhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence                 234567777777788999999999999999999999999999999987764

>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

Probab=100.00  E-value=5.9e-46  Score=386.91  Aligned_cols=243  Identities=25%  Similarity=0.407  Sum_probs=213.5

Q ss_pred             cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCC---c-------cc
Q 004972           12 NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG---D-------VS   80 (721)
Q Consensus        12 ~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~---~-------~~   80 (721)
                      +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.......   .       ..
T Consensus        15 ~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~   94 (275)
T PLN02664         15 NSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRSGERLR   94 (275)
T ss_pred             CCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccchhhHHHHH
Confidence            6889999999995 69999999999999999999999999999999999999999999885421100   0       00


Q ss_pred             ccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHH
Q 004972           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAI  157 (721)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~  157 (721)
                      .+....++++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|++++|..+|+
T Consensus        95 ~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~  173 (275)
T PLN02664         95 RKIKFLQDAI-TAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVGYGNAM  173 (275)
T ss_pred             HHHHHHHHHH-HHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHhCHHHHH
Confidence            1111223445 5688999999999999999999999999999999999999999999999997   78999999999999


Q ss_pred             HHHHcCCCcCHHHHHHcCCccEEcCC-chHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004972          158 EMMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  236 (721)
Q Consensus       158 ~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (721)
                      +|++||++++|+||+++||||+|||+ +++.+++.+++++|++.+|..+                               
T Consensus       174 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~~~~a~~ia~~~p~a~-------------------------------  222 (275)
T PLN02664        174 ELALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVRLIAEGIAAKSPLAV-------------------------------  222 (275)
T ss_pred             HHHHhCCCCCHHHHHHcCCCceeeCChhHHHHHHHHHHHHHHhCCHHHH-------------------------------
Confidence            99999999999999999999999985 8899999999999999887432                               


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          237 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       237 ~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                           ..+|++++.....++.++++.|...+..++.|+|+++++++|++||++.+
T Consensus       223 -----~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~~  272 (275)
T PLN02664        223 -----TGTKAVLLRSRELSVEQGLDYVATWNSAMLVSDDLNEAVSAQIQKRKPVF  272 (275)
T ss_pred             -----HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCCC
Confidence                 34567777777788999999999999999999999999999999998775

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=6.3e-45  Score=387.79  Aligned_cols=276  Identities=31%  Similarity=0.527  Sum_probs=246.6

Q ss_pred             CceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc
Q 004972          304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  382 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  382 (721)
                      +++||+|||+|.||++||..|+++|++|++||++++.++.+.+.+.+........+.     ....+++++.++++ +.+
T Consensus         3 ~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~   77 (311)
T PRK06130          3 PIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGI-----ASAGMGRIRMEAGLAAAV   77 (311)
T ss_pred             CccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhccc-----HHHHhhceEEeCCHHHHh
Confidence            478999999999999999999999999999999999988877655443332222111     01233567777777 458


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCCC
Q 004972          383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS  462 (721)
Q Consensus       383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t~  462 (721)
                      ++||+||+|||++.+.++.+++++.+.++++++|+|+||+++++++++.+..+.+|+++||++|++.++++|+++++.|+
T Consensus        78 ~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~~~~~~ig~h~~~p~~~~~l~~i~~g~~t~  157 (311)
T PRK06130         78 SGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHFFTPADVIPLVEVVRGDKTS  157 (311)
T ss_pred             ccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEccCCCCccCceEEEeCCCCCC
Confidence            99999999999999999999999999999999999999999999999988888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCeeEEEc-CCCchhhhhhhhHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCC---ccHHHHHHhhc
Q 004972          463 AQVILDLMTVGKIIKKVPVVVG-NCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLP---IGPFQLLDLAG  536 (721)
Q Consensus       463 ~e~~~~~~~l~~~lG~~~v~v~-d~~gfi~nRl~~~~~~Ea~~l~~~G-v~~~~ID~a~-~~~G~p---~Gpf~~~D~~G  536 (721)
                      +++++.+.++++.+|+.+++++ +.|||++||++.++++||+.++++| +++++||.++ .++|||   +|||+++|.+|
T Consensus       158 ~~~~~~v~~l~~~~G~~~v~~~~d~~G~i~nr~~~~~~~Ea~~l~~~g~~~~~~id~~~~~~~g~~~~~~Gp~~~~D~~G  237 (311)
T PRK06130        158 PQTVATTMALLRSIGKRPVLVKKDIPGFIANRIQHALAREAISLLEKGVASAEDIDEVVKWSLGIRLALTGPLEQRDMNG  237 (311)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCccCCCHHHHhhhhc
Confidence            9999999999999999999995 8899999999999999999999996 5999999999 899998   69999999999


Q ss_pred             hHHHHHHHHHHHHhCCCCCCCcHHHHHHHHcCCCCcccCccccccCCC
Q 004972          537 YGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKG  584 (721)
Q Consensus       537 ld~~~~~~~~l~~~~~~~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~  584 (721)
                      +|++.++++.+++.+++++.|++++++|+++|++|+|+|+|||+|+++
T Consensus       238 l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~g~~G~~~g~gfy~y~~~  285 (311)
T PRK06130        238 LDVHLAVASYLYQDLENRTTPSPLLEEKVEAGELGAKSGQGFYAWPPE  285 (311)
T ss_pred             cchHHHHHHHHHHhcCCcCCCCHHHHHHHHcCCccccCCCcCccCCCC
Confidence            999999999999999887779999999999999999999999999754

>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase)

Probab=100.00  E-value=8.9e-46  Score=382.21  Aligned_cols=250  Identities=25%  Similarity=0.365  Sum_probs=210.7

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcCCCCchhhhhccCCCcccc
Q 004972            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVSL   81 (721)
Q Consensus         4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~   81 (721)
                      +.+.+++++++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++...........
T Consensus         2 ~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~   81 (259)
T TIGR01929         2 TDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGV   81 (259)
T ss_pred             ceEEEEEcCCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhH
Confidence            457777635789999999995 6999999999999999999999999999999999 79999999998743211110000


Q ss_pred             cchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHH
Q 004972           82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIE  158 (721)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~  158 (721)
                      .......++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|++++|+.+|++
T Consensus        82 ~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~~  160 (259)
T TIGR01929        82 HRLNVLDVQ-RQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKARE  160 (259)
T ss_pred             HHHHHHHHH-HHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHHHH
Confidence            001122344 6688999999999999999999999999999999999999999999999986   889999999999999


Q ss_pred             HHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCC
Q 004972          159 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM  238 (721)
Q Consensus       159 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (721)
                      |+++|++++|+||+++||||+|||++++++++.++++++++.+|..++                                
T Consensus       161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------------------------------  208 (259)
T TIGR01929       161 IWFLCRQYDAEQALDMGLVNTVVPLADLEKETVRWCREILQKSPMAIR--------------------------------  208 (259)
T ss_pred             HHHhCCccCHHHHHHcCCcccccCHHHHHHHHHHHHHHHHhCCHHHHH--------------------------------
Confidence            999999999999999999999999999999999999999998875332                                


Q ss_pred             hhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          239 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       239 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                          .+|++++..... ....++.|.+.+..++.|+|+++++++|++||++++
T Consensus       209 ----~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~~  256 (259)
T TIGR01929       209 ----MLKAALNADCDG-QAGLQELAGNATMLFYMTEEGQEGRNAFLEKRQPDF  256 (259)
T ss_pred             ----HHHHHHHhhhcc-chHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCC
Confidence                345555554332 345566778889999999999999999999998775

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.

>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase

Probab=100.00  E-value=1.5e-45  Score=379.82  Aligned_cols=249  Identities=27%  Similarity=0.323  Sum_probs=209.2

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcCCCCchhhhhccCCCccc
Q 004972            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVS   80 (721)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~   80 (721)
                      |+++.+++ +++|++||||||+ .|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++..... . ..
T Consensus         1 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~-~-~~   77 (256)
T TIGR03210         1 YEDILYEK-RNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYD-G-RG   77 (256)
T ss_pred             CCceEEEe-eCCEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhcccc-c-hh
Confidence            45788898 7899999999995 7999999999999999999999999999999998 69999999998743111 1 11


Q ss_pred             ccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHH
Q 004972           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAI  157 (721)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~  157 (721)
                      .+......++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|++++|..+|+
T Consensus        78 ~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~  156 (256)
T TIGR03210        78 TIGLPMEELH-SAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKAR  156 (256)
T ss_pred             HHHHHHHHHH-HHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHHH
Confidence            1112233455 6689999999999999999999999999999999999999999999999854   88999999999999


Q ss_pred             HHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCC
Q 004972          158 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN  237 (721)
Q Consensus       158 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (721)
                      +|+++|++++|+||+++||||+|+|++++++++.++++++++.+|..+                                
T Consensus       157 ~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~--------------------------------  204 (256)
T TIGR03210       157 EIWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQKWCDEIVEKSPTAI--------------------------------  204 (256)
T ss_pred             HHHHhCCCcCHHHHHHcCCceeeeCHHHHHHHHHHHHHHHHhCCHHHH--------------------------------
Confidence            999999999999999999999999999999999999999999887533                                


Q ss_pred             ChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004972          238 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  292 (721)
Q Consensus       238 ~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  292 (721)
                          ..+|++++......... ...|...+..++.|+|+++++.+|++||++++.
T Consensus       205 ----~~~K~~l~~~~~~~~~~-~~~~~~~~~~~~~~~d~~e~~~af~~kr~p~~~  254 (256)
T TIGR03210       205 ----AIAKRSFNMDTAHQRGI-AGMGMYALKLYYDTAESREGVKAFQEKRKPEFR  254 (256)
T ss_pred             ----HHHHHHHHHhhcccchH-HHHHHHHHHHHccChhHHHHHHHHhccCCCCCC
Confidence                23455565543322111 123556788899999999999999999987753

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.

>PRK07260 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.1e-45  Score=379.12  Aligned_cols=248  Identities=22%  Similarity=0.315  Sum_probs=219.5

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccc
Q 004972            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL   81 (721)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   81 (721)
                      ++++.+++ +++|++||||||+ .|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++...........
T Consensus         1 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   79 (255)
T PRK07260          1 FEHIIYEV-EDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQS   79 (255)
T ss_pred             CCceEEEE-ECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhh
Confidence            35688888 7899999999996 699999999999999999999999999999999999999999999864221111111


Q ss_pred             ---cchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHH
Q 004972           82 ---MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSK  155 (721)
Q Consensus        82 ---~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~  155 (721)
                         +....++++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++++|++|..+
T Consensus        80 ~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~  158 (255)
T PRK07260         80 LVKIAELVNEIS-FAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNR  158 (255)
T ss_pred             HHHHHHHHHHHH-HHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHH
Confidence               122334455 5689999999999999999999999999999999999999999999999997   789999999999


Q ss_pred             HHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004972          156 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  235 (721)
Q Consensus       156 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (721)
                      +++|+++|++++|+||+++||||+++|++++.+++.++++++++.+|..                               
T Consensus       159 a~~l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a-------------------------------  207 (255)
T PRK07260        159 ATHLAMTGEALTAEKALEYGFVYRVAESEKLEKTCEQLLKKLRRGSSNS-------------------------------  207 (255)
T ss_pred             HHHHHHhCCccCHHHHHHcCCcceecCHhHHHHHHHHHHHHHHcCCHHH-------------------------------
Confidence            9999999999999999999999999999999999999999999987643                               


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhh
Q 004972          236 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA  288 (721)
Q Consensus       236 ~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~  288 (721)
                           ...+|+.++.....++++.+..|...+..++.|+|+++++++|++||+
T Consensus       208 -----~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~  255 (255)
T PRK07260        208 -----YAAIKSLVWESFFKGWEDYAKLELALQESLAFKEDFKEGVRAFSERRR  255 (255)
T ss_pred             -----HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Confidence                 235577788877888999999999999999999999999999999885

>PRK07659 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.3e-45  Score=381.54  Aligned_cols=248  Identities=22%  Similarity=0.273  Sum_probs=218.6

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCccccc
Q 004972            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM   82 (721)
Q Consensus         4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (721)
                      +++.+++ +++|++||||||+ .|++|.+|+.+|.++++++ .|+++++|||||.|++||+|+|++++...........+
T Consensus         6 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   83 (260)
T PRK07659          6 ESVVVKY-EGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDGV   83 (260)
T ss_pred             ceEEEEe-eCCEEEEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCCCCcccccCHHHHhhccCchhHHHH
Confidence            4588888 7899999999995 6999999999999999999 58899999999999999999999998642211111222


Q ss_pred             chHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHHH
Q 004972           83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEM  159 (721)
Q Consensus        83 ~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~l  159 (721)
                      .....+++ ..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|++++|..+|++|
T Consensus        84 ~~~~~~~~-~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~~l  162 (260)
T PRK07659         84 MNTISEIV-VTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQI  162 (260)
T ss_pred             HHHHHHHH-HHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHHHHH
Confidence            23334555 5688999999999999999999999999999999999999999999999996   7899999999999999


Q ss_pred             HHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCCh
Q 004972          160 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP  239 (721)
Q Consensus       160 ~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (721)
                      +++|++++|+||+++||||+|| ++++.+++.++++++++.++..                                   
T Consensus       163 ~ltg~~~~a~eA~~~Glv~~vv-~~~~~~~a~~~a~~l~~~~~~a-----------------------------------  206 (260)
T PRK07659        163 IWEGKKLSATEALDLGLIDEVI-GGDFQTAAKQKISEWLQKPLKA-----------------------------------  206 (260)
T ss_pred             HHhCCccCHHHHHHcCChHHHh-hhHHHHHHHHHHHHHHhCCHHH-----------------------------------
Confidence            9999999999999999999999 7889999999999999987642                                   


Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          240 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       240 A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                       ...+|++++.....++++.++.|.+.+..++.|+|+++++.+|++||+++.
T Consensus       207 -~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~  257 (260)
T PRK07659        207 -MIETKQIYCELNRSQLEQVLQLEKRAQYAMRQTADHKEGIRAFLEKRLPVF  257 (260)
T ss_pred             -HHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCCC
Confidence             235567787777788999999999999999999999999999999998764

>PRK11423 methylmalonyl-CoA decarboxylase; Provisional

Probab=100.00  E-value=1.4e-45  Score=380.87  Aligned_cols=250  Identities=21%  Similarity=0.289  Sum_probs=217.0

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC--CCCCcCCCCchhhhhccCCC
Q 004972            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN--GGRFSGGFDINVFQKVHGAG   77 (721)
Q Consensus         1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~--g~~F~aG~Dl~~~~~~~~~~   77 (721)
                      ||++.+.+++ +++|++||||||+ .|++|.+|+.+|.+++++++.|+ +++|||||.  |++||+|+|++++..... .
T Consensus         1 ~~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~-~   77 (261)
T PRK11423          1 MSMQYVNVVT-INKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGR-D   77 (261)
T ss_pred             CCccceEEEe-ECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhccc-c
Confidence            9999999999 7999999999995 79999999999999999999887 999999986  379999999998753211 1


Q ss_pred             cccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHH
Q 004972           78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLS  154 (721)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~  154 (721)
                       ...+.....+++ +.+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   ++++++++|..
T Consensus        78 -~~~~~~~~~~l~-~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~  155 (261)
T PRK11423         78 -PLSYDDPLRQIL-RMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFH  155 (261)
T ss_pred             -HHHHHHHHHHHH-HHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHH
Confidence             112223334555 6689999999999999999999999999999999999999999999999886   88999999999


Q ss_pred             HHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004972          155 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  234 (721)
Q Consensus       155 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (721)
                      +|++|+++|++++|+||+++||||+|||++++++.+.++++++++.+|..+                             
T Consensus       156 ~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l~~~~~~a~-----------------------------  206 (261)
T PRK11423        156 IVKEMFFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAI-----------------------------  206 (261)
T ss_pred             HHHHHHHcCCCcCHHHHHHcCCcCcccCHHHHHHHHHHHHHHHHhcCHHHH-----------------------------
Confidence            999999999999999999999999999999999999999999999886532                             


Q ss_pred             CCCChhHHHHHHHHHHhhc-CCH-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          235 APNMPQHQACLDVIEEGIV-HGG-YSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       235 ~~~~~A~~~~~~~i~~~~~-~~~-~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                             ..+|++++.... .+. ...++.|.+.+..++.|+|+++++.+|++||++++
T Consensus       207 -------~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~eg~~af~~kr~p~~  258 (261)
T PRK11423        207 -------AVIKEQLRVLGEAHPMNPDEFERIQGLRRAVYDSEDYQEGMNAFLEKRKPVF  258 (261)
T ss_pred             -------HHHHHHHHhhcccCCcchHHHHHHHHHHHHHhCChhHHHHHHHHhccCCCCC
Confidence                   244566664432 233 57888899999999999999999999999998775

>PRK12478 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.8e-45  Score=384.63  Aligned_cols=252  Identities=22%  Similarity=0.208  Sum_probs=214.6

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchh-hhh---cc-
Q 004972            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINV-FQK---VH-   74 (721)
Q Consensus         1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~-~~~---~~-   74 (721)
                      |+++.+.++. +++|++||||||+ .|+||.+|+.+|.+++++++.|+++|+|||||.|++||+|+|+++ +..   .. 
T Consensus         2 ~~~~~v~~~~-~~~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~   80 (298)
T PRK12478          2 PDFQTLLYTT-AGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMM   80 (298)
T ss_pred             CCceEEEEec-cCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhcc
Confidence            7788899998 7999999999995 699999999999999999999999999999999999999999986 321   00 


Q ss_pred             CCC---ccccc---c-hH--HHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCccccc-Ccccc-
Q 004972           75 GAG---DVSLM---P-DV--SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTL-GVIPG-  143 (721)
Q Consensus        75 ~~~---~~~~~---~-~~--~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~-Gl~P~-  143 (721)
                      ...   ....+   . ..  ....+ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++ |++|+ 
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~~~  159 (298)
T PRK12478         81 TDGRWDPGKDFAMVTARETGPTQKF-MAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYLTG  159 (298)
T ss_pred             cccccCchhhhhhhhhhhcchHHHH-HHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCchh
Confidence            000   00111   0 00  11234 45889999999999999999999999999999999999999999997 98876 


Q ss_pred             ccccccccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHH
Q 004972          144 TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREV  223 (721)
Q Consensus       144 ~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  223 (721)
                      ++  .+++|..+|++|++||++++|+||+++||||+|||++++++++.++|++|+..+|..+                  
T Consensus       160 ~~--~~~vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~a~------------------  219 (298)
T PRK12478        160 MW--LYRLSLAKVKWHSLTGRPLTGVQAAEAELINEAVPFERLEARVAEVATELARIPLSQL------------------  219 (298)
T ss_pred             HH--HHHhhHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHH------------------
Confidence            43  3569999999999999999999999999999999999999999999999999876432                  


Q ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHhCCHHHH--------HHHHHHHHhhhhcCC
Q 004972          224 LKLARLQAKKTAPNMPQHQACLDVIEEGIV-HGGYSGVLKEAKVFKELVMLDTSR--------GLVHVFFAQRATSKV  292 (721)
Q Consensus       224 ~~~~~~~~~~~~~~~~A~~~~~~~i~~~~~-~~~~~~l~~E~~~~~~~~~s~~~~--------~~i~aF~~~r~~~~~  292 (721)
                                        ..+|++++.... .+++++++.|.+.+..++.|+|++        +++.+|++||++...
T Consensus       220 ------------------~~~K~~l~~~~~~~~l~~~~~~e~~~~~~~~~s~d~~e~~~~~~~egv~Af~ekR~p~f~  279 (298)
T PRK12478        220 ------------------QAQKLIVNQAYENMGLASTQTLGGILDGLMRNTPDALEFIRTAETQGVRAAVERRDGPFG  279 (298)
T ss_pred             ------------------HHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhcCCccc
Confidence                              345677777666 468999999999999999999997        599999999998754

>PRK08260 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.4e-45  Score=385.01  Aligned_cols=255  Identities=25%  Similarity=0.340  Sum_probs=215.5

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccC-C--
Q 004972            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG-A--   76 (721)
Q Consensus         1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~-~--   76 (721)
                      |+++.+.+++ +++|++||||||+ .|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++..... .  
T Consensus         1 ~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   79 (296)
T PRK08260          1 MTYETIRYDV-ADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAP   79 (296)
T ss_pred             CCcceEEEee-eCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhccccccc
Confidence            7788899999 7899999999995 699999999999999999999999999999999999999999998753100 0  


Q ss_pred             ---------Cc----ccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc
Q 004972           77 ---------GD----VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG  143 (721)
Q Consensus        77 ---------~~----~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~  143 (721)
                               ..    ...+......++ ..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~  158 (296)
T PRK08260         80 RTPVEADEEDRADPSDDGVRDGGGRVT-LRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPE  158 (296)
T ss_pred             ccccccccccccchhHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCC
Confidence                     00    001111123345 6688999999999999999999999999999999999999999999999997


Q ss_pred             ---ccccccccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhc-CchhhhhhhccCCCCCcHH
Q 004972          144 ---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR-RKPWIRSLHRTDKLGSLSE  219 (721)
Q Consensus       144 ---~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~-~~~~~~~~~~~~~~~~~~~  219 (721)
                         +++|++++|..+|++|+++|++++|+||+++||||+|||++++++++.++++++++. ++..               
T Consensus       159 ~g~~~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~i~~~~~~~a---------------  223 (296)
T PRK08260        159 AASSWFLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPPDELLPAARALAREIADNTSPVS---------------  223 (296)
T ss_pred             cchhhhHHHhhCHHHHHHHHHcCCccCHHHHHHCCCceeecCHHHHHHHHHHHHHHHHhcCChHH---------------
Confidence               789999999999999999999999999999999999999999999999999999985 5432               


Q ss_pred             HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhhcCC-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCC
Q 004972          220 AREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHG-GYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  293 (721)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~i~~~~~~~-~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~  293 (721)
                                           +..+|++++.....+ ..+....|...+..++.|+|+++++.+|++||++.+.+
T Consensus       224 ---------------------~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~f~~  277 (296)
T PRK08260        224 ---------------------VALTRQMMWRMAGADHPMEAHRVDSRAIYSRGRSGDGKEGVSSFLEKRPAVFPG  277 (296)
T ss_pred             ---------------------HHHHHHHHHhcccCCCcHHHHHHHHHHHHHHccChhHHHHHHHHhcCCCCCCCC
Confidence                                 234566666653221 22344668888999999999999999999999987654

>PRK07396 dihydroxynaphthoic acid synthetase; Validated

Probab=100.00  E-value=4.4e-45  Score=379.65  Aligned_cols=250  Identities=26%  Similarity=0.368  Sum_probs=212.3

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcCCCCchhhhhccCCCccc
Q 004972            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVS   80 (721)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~   80 (721)
                      ++.+.++. +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....... ..
T Consensus        12 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~-~~   89 (273)
T PRK07396         12 YEDILYKS-ADGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVD-DD   89 (273)
T ss_pred             CcceEEEe-cCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccc-hh
Confidence            45788888 7899999999995 6999999999999999999999999999999998 5999999999874321111 00


Q ss_pred             ccch-HHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHH
Q 004972           81 LMPD-VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKA  156 (721)
Q Consensus        81 ~~~~-~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a  156 (721)
                      .... ....++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +.+|++++|..+|
T Consensus        90 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~a  168 (273)
T PRK07396         90 GVPRLNVLDLQ-RLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKKA  168 (273)
T ss_pred             hhhhhHHHHHH-HHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHHHH
Confidence            0111 122344 5688999999999999999999999999999999999999999999999986   7889999999999


Q ss_pred             HHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004972          157 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  236 (721)
Q Consensus       157 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (721)
                      ++|+++|++++|+||+++||||+|||++++++++.++|+++++.+|..+                               
T Consensus       169 ~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~-------------------------------  217 (273)
T PRK07396        169 REIWFLCRQYDAQEALDMGLVNTVVPLADLEKETVRWCREMLQNSPMAL-------------------------------  217 (273)
T ss_pred             HHHHHhCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCCHHHH-------------------------------
Confidence            9999999999999999999999999999999999999999999887533                               


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004972          237 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  292 (721)
Q Consensus       237 ~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  292 (721)
                           ..+|++++.... ..+...+.|.+.+..++.|+|+++++.+|++||++.+.
T Consensus       218 -----~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~~~  267 (273)
T PRK07396        218 -----RCLKAALNADCD-GQAGLQELAGNATMLFYMTEEAQEGRNAFNEKRQPDFS  267 (273)
T ss_pred             -----HHHHHHHHhhhc-cHHHHHHHHHHHHHHHhcChhHHHHHHHHhCCCCCCCC
Confidence                 234555555433 34445567888899999999999999999999987754

>PRK08259 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.4e-45  Score=375.62  Aligned_cols=245  Identities=27%  Similarity=0.326  Sum_probs=212.8

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcc
Q 004972            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (721)
Q Consensus         1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   79 (721)
                      |+ +.+.+++ +++|++||||||+ .|++|.+|+.+|.++++.+++|+++++|||||.|++||+|+|++++..... ...
T Consensus         1 ~~-~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~-~~~   77 (254)
T PRK08259          1 MS-MSVRVER-NGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRG-NRL   77 (254)
T ss_pred             CC-ceEEEEE-ECCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccc-hhh
Confidence            66 4588888 7899999999996 699999999999999999999999999999999999999999998754211 111


Q ss_pred             cccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHH
Q 004972           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKA  156 (721)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a  156 (721)
                      ..  ......+ ..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|+   +++|++++|..+|
T Consensus        78 ~~--~~~~~~~-~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a  154 (254)
T PRK08259         78 HP--SGDGPMG-PSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRA  154 (254)
T ss_pred             hh--hhcchhh-hHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHH
Confidence            10  0011112 1234799999999999999999999999999999999999999999999986   8899999999999


Q ss_pred             HHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004972          157 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  236 (721)
Q Consensus       157 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (721)
                      ++|+++|++++|+||+++||||+|||++++++++.++|+++++.+|..+                               
T Consensus       155 ~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~-------------------------------  203 (254)
T PRK08259        155 MDLILTGRPVDADEALAIGLANRVVPKGQARAAAEELAAELAAFPQTCL-------------------------------  203 (254)
T ss_pred             HHHHHcCCccCHHHHHHcCCCCEeeChhHHHHHHHHHHHHHHhCCHHHH-------------------------------
Confidence            9999999999999999999999999999999999999999999886432                               


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhh
Q 004972          237 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA  288 (721)
Q Consensus       237 ~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~  288 (721)
                           ..+|++++.....+++++++.|...+..++. +|+++++.+|++|+.
T Consensus       204 -----~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~-~d~~egi~af~~~~~  249 (254)
T PRK08259        204 -----RADRLSALEQWGLPEEAALANEFAHGLAVLA-AEALEGAARFAAGAG  249 (254)
T ss_pred             -----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh-hHHHHHHHHHHhhhc
Confidence                 3456778777778899999999998888887 999999999998876

>PRK06144 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.8e-45  Score=379.15  Aligned_cols=247  Identities=26%  Similarity=0.411  Sum_probs=211.1

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcCCCCchhhhhccCCCccc
Q 004972            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVS   80 (721)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~   80 (721)
                      .+.+.+++ +++|++||||||+ .|++|.+|+++|.+++++++.|+++++|||||.| ++||+|+|++++..........
T Consensus         7 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~   85 (262)
T PRK06144          7 TDELLLEV-RGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAV   85 (262)
T ss_pred             CCceEEEe-eCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHH
Confidence            45788998 7899999999995 6999999999999999999999999999999998 6999999999875432111111


Q ss_pred             ccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccc-cCcccc---ccccccccCHHHH
Q 004972           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT-LGVIPG---TQRLPRLVGLSKA  156 (721)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~-~Gl~P~---~~~l~r~~G~~~a  156 (721)
                      .+......++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||++ +|++|+   +++|++++|..+|
T Consensus        86 ~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~~a  164 (262)
T PRK06144         86 AYERRIDRVL-GALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAARV  164 (262)
T ss_pred             HHHHHHHHHH-HHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCHHHH
Confidence            1222334455 5688999999999999999999999999999999999999999997 999997   7899999999999


Q ss_pred             HHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004972          157 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  236 (721)
Q Consensus       157 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (721)
                      ++++++|++++|+||+++||||+|+|++++++++.++++++++.+|..++                              
T Consensus       165 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~~a~~------------------------------  214 (262)
T PRK06144        165 KDMLFTARLLEAEEALAAGLVNEVVEDAALDARADALAELLAAHAPLTLR------------------------------  214 (262)
T ss_pred             HHHHHcCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence            99999999999999999999999999999999999999999998864332                              


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          237 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       237 ~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                            .+|+.++.....    .++.+.+.+..++.++|+++++.+|++||++.+
T Consensus       215 ------~~K~~l~~~~~~----~l~~~~~~~~~~~~~~~~~e~~~af~~kr~p~~  259 (262)
T PRK06144        215 ------ATKEALRRLRRE----GLPDGDDLIRMCYMSEDFREGVEAFLEKRPPKW  259 (262)
T ss_pred             ------HHHHHHHHhhhc----CHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCC
Confidence                  345555554333    345566788899999999999999999998764

>PRK06023 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.8e-45  Score=375.26  Aligned_cols=244  Identities=25%  Similarity=0.403  Sum_probs=212.8

Q ss_pred             CCCCcEEEEEecC---cEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCC
Q 004972            1 MAAPRVTMEVGND---GVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA   76 (721)
Q Consensus         1 m~~~~v~~~~~~~---~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~   76 (721)
                      |+ +.+.+++ ++   +|++||||||+ .|++|.+|+++|.++++.+++|+++++|||||.|++||+|+|++++......
T Consensus         1 m~-~~i~~~~-~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~   78 (251)
T PRK06023          1 MT-DHILVER-PGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMG   78 (251)
T ss_pred             CC-ceEEEEe-ecCcCcEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhcccc
Confidence            66 4688888 44   59999999995 7999999999999999999999999999999999999999999987542111


Q ss_pred             CcccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCH
Q 004972           77 GDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGL  153 (721)
Q Consensus        77 ~~~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~  153 (721)
                      .  ..+.....+++ ..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|+   ++++++++|.
T Consensus        79 ~--~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~  155 (251)
T PRK06023         79 G--TSFGSEILDFL-IALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGH  155 (251)
T ss_pred             c--hhhHHHHHHHH-HHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhH
Confidence            1  11222334555 6689999999999999999999999999999999999999999999999997   7899999999


Q ss_pred             HHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHH
Q 004972          154 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK  233 (721)
Q Consensus       154 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (721)
                      .+|++++++|++++|+||+++||||+|||++++.+++.++++++++.+|..+                            
T Consensus       156 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~----------------------------  207 (251)
T PRK06023        156 QRAFALLALGEGFSAEAAQEAGLIWKIVDEEAVEAETLKAAEELAAKPPQAL----------------------------  207 (251)
T ss_pred             HHHHHHHHhCCCCCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCCHHHH----------------------------
Confidence            9999999999999999999999999999999999999999999999886432                            


Q ss_pred             hCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 004972          234 TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQ  286 (721)
Q Consensus       234 ~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~  286 (721)
                              ..+|++++... .++.+.++.|.+.+..++.++|+++++++|++|
T Consensus       208 --------~~~K~~l~~~~-~~l~~~~~~e~~~~~~~~~~~~~~e~~~af~e~  251 (251)
T PRK06023        208 --------QIARDLMRGPR-EDILARIDEEAKHFAARLKSAEARAAFEAFMRR  251 (251)
T ss_pred             --------HHHHHHHHhch-hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcC
Confidence                    24456666543 467888999999999999999999999999974

>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase

Probab=100.00  E-value=4.8e-45  Score=374.37  Aligned_cols=242  Identities=26%  Similarity=0.366  Sum_probs=208.5

Q ss_pred             EEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchH
Q 004972            6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV   85 (721)
Q Consensus         6 v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   85 (721)
                      |.+++ +++|++||||||+.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++...    ....+...
T Consensus         3 v~~~~-~~~v~~itlnrp~~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~----~~~~~~~~   77 (251)
T TIGR03189         3 VWLER-DGKLLRLRLARPKANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPD----QCAAMLAS   77 (251)
T ss_pred             EEEEe-eCCEEEEEeCCCCcCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCch----hHHHHHHH
Confidence            67788 78899999999988999999999999999999999999999999999999999999986321    11111222


Q ss_pred             HHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc--ccccccccCHHHHHHHHHcC
Q 004972           86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG--TQRLPRLVGLSKAIEMMLLS  163 (721)
Q Consensus        86 ~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~--~~~l~r~~G~~~a~~l~ltg  163 (721)
                      ..+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+  +++|++++|..+|++|++||
T Consensus        78 ~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~~~~~l~~~vg~~~a~~l~ltg  156 (251)
T TIGR03189        78 LHKLV-IAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAPAASCLLPERMGRVAAEDLLYSG  156 (251)
T ss_pred             HHHHH-HHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhCHHHHHHHHHcC
Confidence            33455 6688999999999999999999999999999999999999999999999986  78999999999999999999


Q ss_pred             CCcCHHHHHHcCCccEEcCCchHHHHHHHH-HHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChhHH
Q 004972          164 KSITSEEGWKLGLIDAVVTSEELLKVSRLW-ALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ  242 (721)
Q Consensus       164 ~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~-a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  242 (721)
                      ++++|+||+++||||+|+|+.+  +++.++ ++++++.+|.++                                    .
T Consensus       157 ~~~~a~eA~~~Glv~~v~~~~~--~~a~~~~a~~la~~~p~a~------------------------------------~  198 (251)
T TIGR03189       157 RSIDGAEGARIGLANAVAEDPE--NAALAWFDEHPAKLSASSL------------------------------------R  198 (251)
T ss_pred             CCCCHHHHHHCCCcceecCcHH--HHHHHHHHHHHHhCCHHHH------------------------------------H
Confidence            9999999999999999997543  466666 688998886432                                    3


Q ss_pred             HHHHHHHHhhcCCHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          243 ACLDVIEEGIVHGGYSGVL-KEAKVFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       243 ~~~~~i~~~~~~~~~~~l~-~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                      .+|++++.....++++++. .|.+.+..++.|+|+++++++|++||++.+
T Consensus       199 ~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~  248 (251)
T TIGR03189       199 FAVRAARLGMNERVKAKIAEVEALYLEELMATHDAVEGLNAFLEKRPALW  248 (251)
T ss_pred             HHHHHHHhhhcccHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhcCCCCC
Confidence            4567777777777777764 788889999999999999999999998875

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.

>PRK05864 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.9e-45  Score=379.64  Aligned_cols=251  Identities=25%  Similarity=0.343  Sum_probs=211.7

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCC---cc
Q 004972            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG---DV   79 (721)
Q Consensus         4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~---~~   79 (721)
                      +.+.++..+++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.......   ..
T Consensus         9 ~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~   88 (276)
T PRK05864          9 SLVLVDHPRPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLTRP   88 (276)
T ss_pred             CceEEeeecCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccccccch
Confidence            457777635789999999995 69999999999999999999999999999999999999999999874321100   00


Q ss_pred             c---ccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCccc-c---ccccccccC
Q 004972           80 S---LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIP-G---TQRLPRLVG  152 (721)
Q Consensus        80 ~---~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P-~---~~~l~r~~G  152 (721)
                      .   ......++++ ..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++| +   +++|++++|
T Consensus        89 ~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG  167 (276)
T PRK05864         89 TYALRSMELLDDVI-LALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAIG  167 (276)
T ss_pred             hHHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhhhC
Confidence            0   1112233445 568899999999999999999999999999999999999999999999997 4   789999999


Q ss_pred             HHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHH
Q 004972          153 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK  232 (721)
Q Consensus       153 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (721)
                      ..+|++|+++|++++|+||+++||||+|+|++++++++.++|++|++.+|..+                           
T Consensus       168 ~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~---------------------------  220 (276)
T PRK05864        168 SSRAFEIMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCYAIAARMAGFSRPGI---------------------------  220 (276)
T ss_pred             HHHHHHHHHcCCccCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCCHHHH---------------------------
Confidence            99999999999999999999999999999999999999999999999886432                           


Q ss_pred             HhCCCChhHHHHHHHHHHhhcC-CHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHhhhhcC
Q 004972          233 KTAPNMPQHQACLDVIEEGIVH-GGYSGVLKEAKVFK-ELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       233 ~~~~~~~A~~~~~~~i~~~~~~-~~~~~l~~E~~~~~-~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                               ..+|++++..... ++++++..|...+. .++.|+|+++++.+|++||++.+
T Consensus       221 ---------~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~d~~e~~~af~~kr~p~~  272 (276)
T PRK05864        221 ---------ELTKRTLWSGLDAASLEAHMQAEGLGQLFVRLLTANFEEAVAARAEKRPPVF  272 (276)
T ss_pred             ---------HHHHHHHHhhcccCCHHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCCC
Confidence                     3456677665554 67888887875432 35789999999999999998764

>PRK05870 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.3e-45  Score=375.18  Aligned_cols=244  Identities=27%  Similarity=0.306  Sum_probs=214.8

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcc
Q 004972            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (721)
Q Consensus         1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   79 (721)
                      |+ +.+.+++ +++|++||||||+ .|++|.+|+++|.++++.+++|+++++|||||.|++||+|+|++++....... .
T Consensus         1 m~-~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~-~   77 (249)
T PRK05870          1 MM-DPVLLDV-DDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRP-A   77 (249)
T ss_pred             CC-ccEEEEc-cCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccccc-h
Confidence            55 3478888 7899999999995 79999999999999999999999999999999999999999999986532211 1


Q ss_pred             cccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHH
Q 004972           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKA  156 (721)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a  156 (721)
                      ........+.+ ..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|+   +++|++++|..+|
T Consensus        78 ~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a  156 (249)
T PRK05870         78 EDGLRRIYDGF-LAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVA  156 (249)
T ss_pred             HHHHHHHHHHH-HHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHHHH
Confidence            11122233445 5588999999999999999999999999999999999999999999999997   7899999999999


Q ss_pred             HHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004972          157 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  236 (721)
Q Consensus       157 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (721)
                      ++|++||++++|+||+++||||+|+  +++++++.++++++++.+|..                                
T Consensus       157 ~~l~ltg~~~~a~eA~~~Glv~~vv--~~l~~~a~~~a~~la~~~~~a--------------------------------  202 (249)
T PRK05870        157 RAALLFGMRFDAEAAVRHGLALMVA--DDPVAAALELAAGPAAAPREL--------------------------------  202 (249)
T ss_pred             HHHHHhCCccCHHHHHHcCCHHHHH--hhHHHHHHHHHHHHHhCCHHH--------------------------------
Confidence            9999999999999999999999999  689999999999999988643                                


Q ss_pred             CChhHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 004972          237 NMPQHQACLDVIEEGIV-HGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQ  286 (721)
Q Consensus       237 ~~~A~~~~~~~i~~~~~-~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~  286 (721)
                          ...+|+.++.... .+++++++.|.+.+..++.|+|+++++++|+++
T Consensus       203 ----~~~~K~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~~  249 (249)
T PRK05870        203 ----VLATKASMRATASLAQHAAAVEFELGPQAASVQSPEFAARLAAAQRR  249 (249)
T ss_pred             ----HHHHHHHHHhccccCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcC
Confidence                3355777887776 789999999999999999999999999999874

>PRK07327 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.2e-45  Score=377.84  Aligned_cols=248  Identities=25%  Similarity=0.303  Sum_probs=207.2

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCc-cc
Q 004972            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD-VS   80 (721)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~-~~   80 (721)
                      ++.+.++.++++|++||||||+ .|++|.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++........ ..
T Consensus        10 ~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   89 (268)
T PRK07327         10 YPALRFDRPPPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRA   89 (268)
T ss_pred             CCeEEEEecCCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHHH
Confidence            5678888744789999999996 699999999999999999999999999999999999999999998754221111 11


Q ss_pred             ccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHH
Q 004972           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAI  157 (721)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~  157 (721)
                      ........++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|++++|..+|+
T Consensus        90 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~  168 (268)
T PRK07327         90 RVWREARDLV-YNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAKAK  168 (268)
T ss_pred             HHHHHHHHHH-HHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCHHHHH
Confidence            1122223445 5688999999999999999999999999999999999999999999999997   88999999999999


Q ss_pred             HHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCC
Q 004972          158 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN  237 (721)
Q Consensus       158 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (721)
                      +|++||++++|+||+++||||+|+|++++++++.++|+++++.+|..++                               
T Consensus       169 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-------------------------------  217 (268)
T PRK07327        169 YYLLLCEPVSGEEAERIGLVSLAVDDDELLPKALEVAERLAAGSQTAIR-------------------------------  217 (268)
T ss_pred             HHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHcCCHHHHH-------------------------------
Confidence            9999999999999999999999999999999999999999998865332                               


Q ss_pred             ChhHHHHHHHHHHhh---cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          238 MPQHQACLDVIEEGI---VHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       238 ~~A~~~~~~~i~~~~---~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                           .+|++++...   ..+++..+..|.    .++.|+|+++++.+|++||++.+
T Consensus       218 -----~~K~~l~~~~~~~~~~~~~~~~~~~----~~~~~~d~~eg~~af~ekr~p~~  265 (268)
T PRK07327        218 -----WTKYALNNWLRMAGPTFDTSLALEF----MGFSGPDVREGLASLREKRAPDF  265 (268)
T ss_pred             -----HHHHHHHHhhhhhhhhHHHHHHHHH----HHccChhHHHHHHHHHhcCCCCC
Confidence                 3344554331   123444444443    47889999999999999998775

>PRK06190 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.7e-44  Score=371.23  Aligned_cols=247  Identities=28%  Similarity=0.403  Sum_probs=219.6

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcc
Q 004972            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (721)
Q Consensus         1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   79 (721)
                      |+++.+.+++ +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.......  
T Consensus         1 ~~~~~v~~~~-~~~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~--   77 (258)
T PRK06190          1 MTEPILLVET-HDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAY--   77 (258)
T ss_pred             CCCceEEEEe-eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchh--
Confidence            8999999999 8999999999995 79999999999999999999999999999999999999999999986421111  


Q ss_pred             cccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHH
Q 004972           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKA  156 (721)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a  156 (721)
                      .. ....++++ ..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++++|++|..+|
T Consensus        78 ~~-~~~~~~~~-~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a  155 (258)
T PRK06190         78 GA-QDALPNPS-PAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRA  155 (258)
T ss_pred             hH-HHHHHHHH-HHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHH
Confidence            11 12234555 6799999999999999999999999999999999999999999999999997   7899999999999


Q ss_pred             HHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004972          157 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  236 (721)
Q Consensus       157 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (721)
                      ++|++||++++|+||+++||||+++|++++++++.++++++++.+|..+                               
T Consensus       156 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~-------------------------------  204 (258)
T PRK06190        156 RRMSLTGDFLDAADALRAGLVTEVVPHDELLPRARRLAASIAGNNPAAV-------------------------------  204 (258)
T ss_pred             HHHHHhCCccCHHHHHHcCCCeEecCHhHHHHHHHHHHHHHHcCCHHHH-------------------------------
Confidence            9999999999999999999999999999999999999999999886433                               


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHhhh
Q 004972          237 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVML---DTSRGLVHVFFAQRA  288 (721)
Q Consensus       237 ~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s---~~~~~~i~aF~~~r~  288 (721)
                           ..+|++++.....+++++++.|...+..++.|   +..++...+|.++-+
T Consensus       205 -----~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~~~~~~~~~~~~~~~  254 (258)
T PRK06190        205 -----RALKASYDDGAAAQTGDALALEAEAARAHNRSVSPDGIAARREAVMARGR  254 (258)
T ss_pred             -----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhhh
Confidence                 35577888888888999999999999999999   677777778877654

>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=100.00  E-value=3e-44  Score=369.91  Aligned_cols=248  Identities=18%  Similarity=0.219  Sum_probs=211.7

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcc
Q 004972            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (721)
Q Consensus         1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   79 (721)
                      |+++.+.+++ +++|++||||||+ .|++|.+|+++|.+++++++  +++++|||||.|++||+|+|++++.........
T Consensus         1 ~~~~~i~~~~-~~~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~   77 (255)
T PRK07112          1 MDYQTIRVRQ-QGDVCFLQLHRPEAQNTINDRLIAECMDVLDRCE--HAATIVVLEGLPEVFCFGADFSAIAEKPDAGRA   77 (255)
T ss_pred             CCCceEEEEe-eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhh--cCceEEEEEcCCCCcccCcCHHHHhhccccchh
Confidence            7888999999 7899999999995 69999999999999999998  469999999999999999999998642221111


Q ss_pred             c-ccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc--ccccccccCHHHH
Q 004972           80 S-LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG--TQRLPRLVGLSKA  156 (721)
Q Consensus        80 ~-~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~--~~~l~r~~G~~~a  156 (721)
                      . .......+++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+  +.+|++++|..++
T Consensus        78 ~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~l~~~vg~~~a  156 (255)
T PRK07112         78 DLIDAEPLYDLW-HRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACVLPFLIRRIGTQKA  156 (255)
T ss_pred             hhhhHHHHHHHH-HHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchhhHHHHHHhCHHHH
Confidence            1 1112233455 6688999999999999999999999999999999999999999999999997  6789999999999


Q ss_pred             HHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004972          157 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  236 (721)
Q Consensus       157 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (721)
                      ++|+++|++++|+||+++||||+|||+++.  .+.++++++++.+|.++                               
T Consensus       157 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~--~~~~~a~~l~~~~p~a~-------------------------------  203 (255)
T PRK07112        157 HYMTLMTQPVTAQQAFSWGLVDAYGANSDT--LLRKHLLRLRCLNKAAV-------------------------------  203 (255)
T ss_pred             HHHHHhCCcccHHHHHHcCCCceecCcHHH--HHHHHHHHHHhCCHHHH-------------------------------
Confidence            999999999999999999999999987653  57889999998876432                               


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          237 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       237 ~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                           ..+|++++.. ...+.++++.|.+.+..++.|+|+++++.+|++||++.+
T Consensus       204 -----~~~K~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~  252 (255)
T PRK07112        204 -----ARYKSYASTL-DDTVAAARPAALAANIEMFADPENLRKIARYVETGKFPW  252 (255)
T ss_pred             -----HHHHHHHHHh-hhhHHHHHHHHHHHHHHHHcChHHHHHHHHHHcCCCCCC
Confidence                 2345566543 345788999999999999999999999999999988764

>PLN02921 naphthoate synthase

Probab=100.00  E-value=3.8e-44  Score=378.41  Aligned_cols=251  Identities=26%  Similarity=0.312  Sum_probs=210.7

Q ss_pred             CCcEEEEEe-cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcCCCCchhhhhccCCCcc
Q 004972            3 APRVTMEVG-NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDV   79 (721)
Q Consensus         3 ~~~v~~~~~-~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~   79 (721)
                      ++.+.++++ +++|++||||||+ .|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++....... .
T Consensus        64 ~~~i~~~~~~~~~Va~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~-~  142 (327)
T PLN02921         64 FTDIIYEKAVGEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVG-P  142 (327)
T ss_pred             CceEEEEEecCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccc-h
Confidence            456788874 4889999999995 6999999999999999999999999999999999 7999999999875321110 0


Q ss_pred             cccch-HHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHH
Q 004972           80 SLMPD-VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSK  155 (721)
Q Consensus        80 ~~~~~-~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~  155 (721)
                      ..... ...+++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+   +++|+|++|..+
T Consensus       143 ~~~~~~~~~~l~-~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~~~  221 (327)
T PLN02921        143 DDAGRLNVLDLQ-IQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQKK  221 (327)
T ss_pred             hHHHHHHHHHHH-HHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCHHH
Confidence            01111 112334 5688999999999999999999999999999999999999999999999985   788999999999


Q ss_pred             HHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004972          156 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  235 (721)
Q Consensus       156 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (721)
                      |++|+++|++++|+||+++||||+|||++++++++.+++++|++.+|..+                              
T Consensus       222 A~ellltG~~~~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~al------------------------------  271 (327)
T PLN02921        222 AREMWFLARFYTASEALKMGLVNTVVPLDELEGETVKWCREILRNSPTAI------------------------------  271 (327)
T ss_pred             HHHHHHcCCcCCHHHHHHCCCceEEeCHHHHHHHHHHHHHHHHccCHHHH------------------------------
Confidence            99999999999999999999999999999999999999999999887533                              


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004972          236 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  292 (721)
Q Consensus       236 ~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  292 (721)
                            ..+|++++..... .......|...+..++.|+|+++++.+|++||++...
T Consensus       272 ------~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~egi~Af~ekr~p~f~  321 (327)
T PLN02921        272 ------RVLKSALNAADDG-HAGLQELGGNATLLFYGSEEGNEGRTAYLEGRAPDFS  321 (327)
T ss_pred             ------HHHHHHHHHhhcc-hhHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCC
Confidence                  2445666655432 3333444568888999999999999999999988753

>PRK07509 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.1e-44  Score=372.33  Aligned_cols=247  Identities=27%  Similarity=0.419  Sum_probs=215.5

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCccccc
Q 004972            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM   82 (721)
Q Consensus         4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (721)
                      +.+.+++ +++|++||||||+ .|++|.+|+++|.++++.++.|+++++|||||.|++||+|+|++++....... ....
T Consensus         3 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~-~~~~   80 (262)
T PRK07509          3 DRVSVTI-EDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGNA-VKLL   80 (262)
T ss_pred             ceEEEEe-eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccchh-hhhH
Confidence            5788999 7999999999994 79999999999999999999999999999999999999999999886432111 1111


Q ss_pred             c-------hHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccC
Q 004972           83 P-------DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVG  152 (721)
Q Consensus        83 ~-------~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G  152 (721)
                      .       ....+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   ++++++++|
T Consensus        81 ~~~~~~~~~~~~~~~-~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g  159 (262)
T PRK07509         81 FKRLPGNANLAQRVS-LGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVR  159 (262)
T ss_pred             hhhhHHHHHHHHHHH-HHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHhC
Confidence            1       1122333 5578999999999999999999999999999999999999999999999997   789999999


Q ss_pred             HHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHH
Q 004972          153 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK  232 (721)
Q Consensus       153 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (721)
                      ..++++|+++|++++|+||+++||||+|++  ++.+++.++++++++.+|..                            
T Consensus       160 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~--~~~~~a~~~a~~l~~~~~~~----------------------------  209 (262)
T PRK07509        160 KDVARELTYTARVFSAEEALELGLVTHVSD--DPLAAALALAREIAQRSPDA----------------------------  209 (262)
T ss_pred             HHHHHHHHHcCCCcCHHHHHHcCChhhhhc--hHHHHHHHHHHHHHhCCHHH----------------------------
Confidence            999999999999999999999999999995  37889999999999987643                            


Q ss_pred             HhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          233 KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       233 ~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                              ...+|+.++.....++.+++..|.+.+..++.++|+++++.+|++||++.+
T Consensus       210 --------~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~~  260 (262)
T PRK07509        210 --------IAAAKRLINRSWTASVRALLARESVEQIRLLLGKNQKIAVKAQMKKRAPKF  260 (262)
T ss_pred             --------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence                    234567777777788899999999999999999999999999999988753

>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

Probab=100.00  E-value=4.1e-44  Score=370.11  Aligned_cols=249  Identities=36%  Similarity=0.571  Sum_probs=215.2

Q ss_pred             CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCccc
Q 004972            2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS   80 (721)
Q Consensus         2 ~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~   80 (721)
                      .++.+.++. .++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++..........
T Consensus         3 ~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~   81 (257)
T COG1024           3 TYETILVER-EDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAE   81 (257)
T ss_pred             CCCeeEEEe-eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHHH
Confidence            356788888 6779999999996 69999999999999999999999999999999999999999999987511111111


Q ss_pred             ccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHH
Q 004972           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAI  157 (721)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~  157 (721)
                      ......+.++ ..+.++||||||+|||+|+|||++|+|+||+|||+++++|++||+++|++||   +++++|++|..+|.
T Consensus        82 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a~  160 (257)
T COG1024          82 NLMQPGQDLL-RALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAK  160 (257)
T ss_pred             HHHhHHHHHH-HHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHHH
Confidence            2222333456 6799999999999999999999999999999999999999999999999995   99999999999999


Q ss_pred             HHHHcCCCcCHHHHHHcCCccEEcCC-chHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004972          158 EMMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  236 (721)
Q Consensus       158 ~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (721)
                      +|++||+.++|+||+++||||+++++ +++++.+.+++++++. +|.                                 
T Consensus       161 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~a~-~~~---------------------------------  206 (257)
T COG1024         161 ELLLTGEPISAAEALELGLVDEVVPDAEELLERALELARRLAA-PPL---------------------------------  206 (257)
T ss_pred             HHHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHHHHHHHcc-CHH---------------------------------
Confidence            99999999999999999999999985 7999999999999987 332                                 


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhc
Q 004972          237 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS  290 (721)
Q Consensus       237 ~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~  290 (721)
                         +...+|+.++.....++++.+..|...+...+.++|++|++++|++ |++.
T Consensus       207 ---a~~~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~eg~~a~~~-r~p~  256 (257)
T COG1024         207 ---ALAATKRLVRAALEADLAEALEAEALAFARLFSSEDFREGVRAFLE-RKPV  256 (257)
T ss_pred             ---HHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhcChhHHHHHHHHHc-cCCC
Confidence               2234566777776666889999999999999999999999999999 5543

>PRK06072 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7.2e-44  Score=365.61  Aligned_cols=240  Identities=19%  Similarity=0.252  Sum_probs=210.7

Q ss_pred             EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccch
Q 004972            6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD   84 (721)
Q Consensus         6 v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   84 (721)
                      |.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|+.||+|+|++++....    ...+..
T Consensus         2 i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~----~~~~~~   76 (248)
T PRK06072          2 IKVES-REGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDF----AIDLRE   76 (248)
T ss_pred             eEEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhh----HHHHHH
Confidence            56777 7899999999995 79999999999999999999999999999999999999999999875321    111222


Q ss_pred             HHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHHHHH
Q 004972           85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMML  161 (721)
Q Consensus        85 ~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~l~l  161 (721)
                      .+..++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   ++++++++|. +++++++
T Consensus        77 ~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~-~a~~lll  154 (248)
T PRK06072         77 TFYPII-REIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQ-RFYEILV  154 (248)
T ss_pred             HHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhH-HHHHHHH
Confidence            334555 6688999999999999999999999999999999999999999999999997   7899999996 8999999


Q ss_pred             cCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChhH
Q 004972          162 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH  241 (721)
Q Consensus       162 tg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~  241 (721)
                      +|++++|+||+++||||++   +++++++.++|+++++.+|..                                    .
T Consensus       155 ~g~~~~a~eA~~~Glv~~~---~~~~~~a~~~a~~la~~~~~a------------------------------------~  195 (248)
T PRK06072        155 LGGEFTAEEAERWGLLKIS---EDPLSDAEEMANRISNGPFQS------------------------------------Y  195 (248)
T ss_pred             hCCccCHHHHHHCCCcccc---chHHHHHHHHHHHHHhCCHHH------------------------------------H
Confidence            9999999999999999953   467899999999999887643                                    2


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          242 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       242 ~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                      ..+|++++.....++++.++.|.+.+..++.|+|+++++.+|++||++.+
T Consensus       196 ~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~  245 (248)
T PRK06072        196 IAAKRMINLVLYNDLEEFLEYESAIQGYLGKTEDFKEGISSFKEKREPKF  245 (248)
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHHHHHHhCChhHHHHHHHHhcCCCCCC
Confidence            34567777777778899999999999999999999999999999998775

>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix

Probab=100.00  E-value=2.2e-44  Score=370.25  Aligned_cols=241  Identities=34%  Similarity=0.544  Sum_probs=218.1

Q ss_pred             EEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchH
Q 004972            7 TMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV   85 (721)
Q Consensus         7 ~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   85 (721)
                      .+++ +++|++|+|||| +.|++|.+++++|.++++.++.|+++++||++|.+++||+|.|++++... .......+...
T Consensus         1 ~~~~-~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~-~~~~~~~~~~~   78 (245)
T PF00378_consen    1 KYEI-EDGVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNS-DEEEAREFFRR   78 (245)
T ss_dssp             EEEE-ETTEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHH-HHHHHHHHHHH
T ss_pred             CEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhcc-ccccccccchh
Confidence            3677 799999999999 78999999999999999999999999999999999999999999998775 22223344455


Q ss_pred             HHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHHHHHc
Q 004972           86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLL  162 (721)
Q Consensus        86 ~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~l~lt  162 (721)
                      ...++ ..+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|+   +.+|+|++|..+|++++++
T Consensus        79 ~~~l~-~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l~  157 (245)
T PF00378_consen   79 FQELL-SRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLLT  157 (245)
T ss_dssp             HHHHH-HHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccc-ccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeecccccccccc
Confidence            66666 6799999999999999999999999999999999999999999999999996   8899999999999999999


Q ss_pred             CCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChhHH
Q 004972          163 SKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ  242 (721)
Q Consensus       163 g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  242 (721)
                      |++++|+||+++||||+|+|++++.+++.+++++++..++..+                                    .
T Consensus       158 g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~------------------------------------~  201 (245)
T PF00378_consen  158 GEPISAEEALELGLVDEVVPDEELDEEALELAKRLAAKPPSAL------------------------------------R  201 (245)
T ss_dssp             TCEEEHHHHHHTTSSSEEESGGGHHHHHHHHHHHHHTSCHHHH------------------------------------H
T ss_pred             cccchhHHHHhhcceeEEcCchhhhHHHHHHHHHHhcCCHHHH------------------------------------H
Confidence            9999999999999999999999999999999999999876432                                    3


Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 004972          243 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQ  286 (721)
Q Consensus       243 ~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~  286 (721)
                      .+|+.++........+.++.|.+.+..++.++|+++++++|+||
T Consensus       202 ~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~f~eK  245 (245)
T PF00378_consen  202 ATKKALNRALEQSLEEALEFEQDLFAECFKSEDFQEGIAAFLEK  245 (245)
T ss_dssp             HHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCc
Confidence            55777888778888999999999999999999999999999987

Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....

>PRK07854 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.2e-43  Score=362.71  Aligned_cols=235  Identities=26%  Similarity=0.400  Sum_probs=204.5

Q ss_pred             EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccch
Q 004972            6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD   84 (721)
Q Consensus         6 v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   84 (721)
                      +.+++ +++|++||||||+ .|++|.+|+.+|.+++++++.+ ++++|||||.|++||+|+|+++...      ...+..
T Consensus         2 ~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~~~------~~~~~~   73 (243)
T PRK07854          2 IGVTR-DGQVLTIELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGDVY------ADDFPD   73 (243)
T ss_pred             ceEEE-eCCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECCCCceecccCCccchh------HHHHHH
Confidence            56777 7899999999995 6999999999999999999864 9999999999999999999985311      111222


Q ss_pred             HHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHHHHH
Q 004972           85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMML  161 (721)
Q Consensus        85 ~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~l~l  161 (721)
                      ...+++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|++++|..+|++|++
T Consensus        74 ~~~~~~-~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~l  152 (243)
T PRK07854         74 ALIEML-HAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAMLL  152 (243)
T ss_pred             HHHHHH-HHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHHH
Confidence            334555 6688999999999999999999999999999999999999999999999997   789999999999999999


Q ss_pred             cCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChhH
Q 004972          162 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH  241 (721)
Q Consensus       162 tg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~  241 (721)
                      ||++++|+||+++||||+|++   +. ++.++++++++.+|..+                                    
T Consensus       153 tg~~~~a~eA~~~Glv~~v~~---~~-~a~~~a~~l~~~~~~a~------------------------------------  192 (243)
T PRK07854        153 GAEKLTAEQALATGMANRIGT---LA-DAQAWAAEIAGLAPLAL------------------------------------  192 (243)
T ss_pred             cCCCcCHHHHHHCCCcccccC---HH-HHHHHHHHHHhCCHHHH------------------------------------
Confidence            999999999999999999975   22 88999999999876432                                    


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          242 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       242 ~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                      ..+|+.++..  .+++++++.|.+.+..++.|+|+++++.+|++||++.+
T Consensus       193 ~~~K~~l~~~--~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~  240 (243)
T PRK07854        193 QHAKRVLNDD--GAIEEAWPAHKELFDKAWASQDAIEAQVARIEKRPPKF  240 (243)
T ss_pred             HHHHHHHHcc--CCHHHHHHHHHHHHHHHhcCchHHHHHHHHhCCCCCCC
Confidence            3456666654  56889999999999999999999999999999998764

>PRK07827 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.6e-43  Score=366.07  Aligned_cols=247  Identities=25%  Similarity=0.347  Sum_probs=213.7

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhcc-CCCc-cc
Q 004972            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVH-GAGD-VS   80 (721)
Q Consensus         4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~-~~~~-~~   80 (721)
                      +.+.++. +++|++|+||||+ .|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++.... .... ..
T Consensus         6 ~~i~~~~-~~~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   84 (260)
T PRK07827          6 TLVRYAV-DGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGGDPYDAAV   84 (260)
T ss_pred             cceEEEe-eCCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhcccCchhHHH
Confidence            4577888 7899999999995 79999999999999999999999999999999999999999999875421 1111 11


Q ss_pred             ccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHH
Q 004972           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAI  157 (721)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~  157 (721)
                      .+.....+++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   ++++++++ ..+++
T Consensus        85 ~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~-~~~a~  162 (260)
T PRK07827         85 ARAREMTALL-RAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLS-PRAAA  162 (260)
T ss_pred             HHHHHHHHHH-HHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhh-HHHHH
Confidence            1222334455 6688999999999999999999999999999999999999999999999998   77888875 56899


Q ss_pred             HHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCC
Q 004972          158 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN  237 (721)
Q Consensus       158 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (721)
                      +|+++|++++|+||+++||||++++  ++.+++.++++++++.++..                                 
T Consensus       163 ~l~l~g~~~~a~eA~~~Glv~~v~~--~l~~~a~~~a~~la~~~~~a---------------------------------  207 (260)
T PRK07827        163 RYYLTGEKFGAAEAARIGLVTAAAD--DVDAAVAALLADLRRGSPQG---------------------------------  207 (260)
T ss_pred             HHHHhCCccCHHHHHHcCCcccchH--HHHHHHHHHHHHHHhCCHHH---------------------------------
Confidence            9999999999999999999999974  59999999999999987642                                 


Q ss_pred             ChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          238 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       238 ~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                         ...+|++++......+++.++.|...+..++.++++++++++|++||++++
T Consensus       208 ---~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~kr~p~~  258 (260)
T PRK07827        208 ---LAESKALTTAAVLAGFDRDAEELTEESARLFVSDEAREGMTAFLQKRPPRW  258 (260)
T ss_pred             ---HHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence               335677888877888899999999999999999999999999999987653

>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=100.00  E-value=2.7e-43  Score=361.61  Aligned_cols=242  Identities=21%  Similarity=0.270  Sum_probs=216.2

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcc
Q 004972            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (721)
Q Consensus         1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   79 (721)
                      |.++.+.+++ +++|++|+||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++.......  
T Consensus         2 ~~~~~~~~~~-~~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~--   78 (249)
T PRK07110          2 MMKVVELREV-EEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGK--   78 (249)
T ss_pred             CCCceEEEEe-eCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchh--
Confidence            5678888898 7899999999995 69999999999999999999999999999999999999999999876432211  


Q ss_pred             cccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHH
Q 004972           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKA  156 (721)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a  156 (721)
                      ..+. . .+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   ++++++++|..+|
T Consensus        79 ~~~~-~-~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a  155 (249)
T PRK07110         79 GTFT-E-ANLY-SLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALG  155 (249)
T ss_pred             hhHh-h-HHHH-HHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHH
Confidence            1111 1 3455 6689999999999999999999999999999999999999999999999997   7899999999999


Q ss_pred             HHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004972          157 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  236 (721)
Q Consensus       157 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (721)
                      ++|++||++++|+||+++||||+|+|++++++++.++++++++.++.+                                
T Consensus       156 ~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a--------------------------------  203 (249)
T PRK07110        156 QEMLLTARYYRGAELKKRGVPFPVLPRAEVLEKALELARSLAEKPRHS--------------------------------  203 (249)
T ss_pred             HHHHHcCCccCHHHHHHcCCCeEEeChHHHHHHHHHHHHHHHhCCHHH--------------------------------
Confidence            999999999999999999999999999999999999999999987643                                


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004972          237 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFF  284 (721)
Q Consensus       237 ~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~  284 (721)
                          ...+|+.++.....++.++++.|.+.+..++.|+|+++++....
T Consensus       204 ----~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~~~~  247 (249)
T PRK07110        204 ----LVLLKDHLVADRRRRLPEVIEQEVAMHEKTFHQPEVKRRIESLY  247 (249)
T ss_pred             ----HHHHHHHHHHhhhccHHHHHHHHHHHHHHHhCCHhHHHHHHHhc
Confidence                23567788888888999999999999999999999999998653

>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional

Probab=100.00  E-value=1.3e-43  Score=378.36  Aligned_cols=283  Identities=23%  Similarity=0.328  Sum_probs=216.1

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcCCCCchhhhhccCCCccc-
Q 004972            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVS-   80 (721)
Q Consensus         4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~-   80 (721)
                      +.+.+++ +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.......... 
T Consensus         3 ~~v~~~~-~~~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~   81 (342)
T PRK05617          3 DEVLAEV-EGGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLA   81 (342)
T ss_pred             ceEEEEE-ECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchh
Confidence            5688888 7899999999995 6999999999999999999999999999999999 8999999999875422111000 


Q ss_pred             --ccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHH
Q 004972           81 --LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSK  155 (721)
Q Consensus        81 --~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~  155 (721)
                        .+.....+++ ..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|+|++| .+
T Consensus        82 ~~~~~~~~~~~~-~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g-~~  159 (342)
T PRK05617         82 ADRFFREEYRLN-ALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPG-AL  159 (342)
T ss_pred             HHHHHHHHHHHH-HHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhccc-HH
Confidence              1112223444 6688999999999999999999999999999999999999999999999997   889999987 78


Q ss_pred             HHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHH------------HHHhcC---c--------hhhhhhhccC
Q 004972          156 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWAL------------DIAARR---K--------PWIRSLHRTD  212 (721)
Q Consensus       156 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~------------~~a~~~---~--------~~~~~~~~~~  212 (721)
                      |++|++||++++|+||+++||||+|+|++++.+...++++            .+.+.+   |        ..+.+.+.. 
T Consensus       160 a~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-  238 (342)
T PRK05617        160 GTYLALTGARISAADALYAGLADHFVPSADLPALLDALISLRWDSGADVVDAALAAFATPAPASELAAQRAWIDECFAG-  238 (342)
T ss_pred             HHHHHHcCCCCCHHHHHHcCCcceecCHHHHHHHHHHHHhcCCccchhHHHHHHHHhccCCCcchhHHHHHHHHHHhCC-
Confidence            9999999999999999999999999999988776433221            111111   0        001111100 


Q ss_pred             CCCCcHHHHHHHH-----HHHHHHHHh-CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-H
Q 004972          213 KLGSLSEAREVLK-----LARLQAKKT-APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFF-A  285 (721)
Q Consensus       213 ~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~-~  285 (721)
                        .+.......++     .+.+..++. ...-.|+..+|++++.+...+++++++.|.+.+..++.++|+++++++|+ +
T Consensus       239 --~~~~~~~~~l~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~egv~afl~e  316 (342)
T PRK05617        239 --DTVEDIIAALEADGGEFAAKTADTLRSRSPTSLKVTLEQLRRARGLTLEECLRRELRLALAMLRSPDFVEGVRAVLID  316 (342)
T ss_pred             --CCHHHHHHHHHhccHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCchhhccceEEEc
Confidence              01111111111     122222221 12233778889999998888999999999999999999999999999997 7


Q ss_pred             h-hhhcCC
Q 004972          286 Q-RATSKV  292 (721)
Q Consensus       286 ~-r~~~~~  292 (721)
                      | |++++.
T Consensus       317 k~r~p~~~  324 (342)
T PRK05617        317 KDRNPKWS  324 (342)
T ss_pred             CCCCCCCC
Confidence            6 666653

>PRK08321 naphthoate synthase; Validated

Probab=100.00  E-value=7.9e-43  Score=367.14  Aligned_cols=249  Identities=24%  Similarity=0.307  Sum_probs=207.7

Q ss_pred             cEEEEEe-cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-------CCCcCCCCchhhhhcc-
Q 004972            5 RVTMEVG-NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-------GRFSGGFDINVFQKVH-   74 (721)
Q Consensus         5 ~v~~~~~-~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g-------~~F~aG~Dl~~~~~~~-   74 (721)
                      +++++++ +++|++||||||+ .|++|.+|+.+|.++++.++.|+++++|||||.|       ++||+|+|++++.... 
T Consensus        24 ~i~~~~~~~~~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~  103 (302)
T PRK08321         24 DITYHRAVDQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGY  103 (302)
T ss_pred             eEEEEEecCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccc
Confidence            4677663 4789999999996 6999999999999999999999999999999988       5899999999763210 


Q ss_pred             ---CCC--cc-c--ccchH-HHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEee-CCceEeCcccccCcccc-
Q 004972           75 ---GAG--DV-S--LMPDV-SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA-PKTQLGLPELTLGVIPG-  143 (721)
Q Consensus        75 ---~~~--~~-~--~~~~~-~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~-~~a~~~~pe~~~Gl~P~-  143 (721)
                         ...  .. .  ..... ..+++ +.+..+||||||+|||+|+|||++|+++||+||++ ++++|++||+++|++|+ 
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~  182 (302)
T PRK08321        104 QYAEGDEADTVDPARAGRLHILEVQ-RLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDGG  182 (302)
T ss_pred             cccccccccchhhhHHHHHHHHHHH-HHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCCc
Confidence               000  00 0  00011 11233 56889999999999999999999999999999999 69999999999999986 


Q ss_pred             --ccccccccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHH
Q 004972          144 --TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAR  221 (721)
Q Consensus       144 --~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~  221 (721)
                        +++|+|++|..+|++|++||++++|+||+++||||++||++++++++.+++++|++.++..+                
T Consensus       183 ~~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~----------------  246 (302)
T PRK08321        183 YGSAYLARQVGQKFAREIFFLGRTYSAEEAHDMGAVNAVVPHAELETEALEWAREINGKSPTAM----------------  246 (302)
T ss_pred             hHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCceEeeCHHHHHHHHHHHHHHHHhCCHHHH----------------
Confidence              78899999999999999999999999999999999999999999999999999999886533                


Q ss_pred             HHHHHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          222 EVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                                          ..+|++++..... ..+....|.+.+..++.++|+++++.+|++||++.+
T Consensus       247 --------------------~~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~~~d~~egi~af~ekr~p~~  295 (302)
T PRK08321        247 --------------------RMLKYAFNLTDDG-LVGQQLFAGEATRLAYMTDEAQEGRDAFLEKRDPDW  295 (302)
T ss_pred             --------------------HHHHHHHHhhhcc-cHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCC
Confidence                                2445666554443 344455688999999999999999999999998775

>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=1.1e-42  Score=375.45  Aligned_cols=285  Identities=24%  Similarity=0.292  Sum_probs=213.9

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCc-cc
Q 004972            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD-VS   80 (721)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~-~~   80 (721)
                      ++.+.++. +++|++||||||+ .|++|.+|+.+|.++++.++.|++||+|||||.|++||+|+|++++........ ..
T Consensus        10 ~~~v~~~~-~~~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~   88 (379)
T PLN02874         10 EEVVLGEE-KGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESDDSCL   88 (379)
T ss_pred             CCceEEEE-ECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccchHHH
Confidence            45688888 7899999999996 699999999999999999999999999999999999999999999854221111 00


Q ss_pred             ccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHH
Q 004972           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAI  157 (721)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~  157 (721)
                      ........++ ..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|+|++|. .++
T Consensus        89 ~~~~~~~~l~-~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g~-~a~  166 (379)
T PLN02874         89 EVVYRMYWLC-YHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGH-LGE  166 (379)
T ss_pred             HHHHHHHHHH-HHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhHH-HHH
Confidence            1111111233 5688999999999999999999999999999999999999999999999997   8899999985 899


Q ss_pred             HHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHH----------HHHHhc-Cc-------------hhhhhhhccCC
Q 004972          158 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWA----------LDIAAR-RK-------------PWIRSLHRTDK  213 (721)
Q Consensus       158 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a----------~~~a~~-~~-------------~~~~~~~~~~~  213 (721)
                      +|++||++++|+||+++||||+|||++++.+.+.++.          +.+.+. ..             ..+...+.   
T Consensus       167 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~---  243 (379)
T PLN02874        167 YLALTGARLNGKEMVACGLATHFVPSEKLPELEKRLLNLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINECFS---  243 (379)
T ss_pred             HHHHcCCcccHHHHHHcCCccEEeCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHhC---
Confidence            9999999999999999999999999988876322221          000000 00             00000000   


Q ss_pred             CCCcHHHHHHHH---------HHHHHHHHhCCCCh-hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHHH
Q 004972          214 LGSLSEAREVLK---------LARLQAKKTAPNMP-QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVM---LDTSRGLV  280 (721)
Q Consensus       214 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~-A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~---s~~~~~~i  280 (721)
                      ..+..+....+.         .+.+..++....-| |...+|++++.+...+++++++.|.+....++.   ++|++||+
T Consensus       244 ~~~~~eii~al~~~~~~~~~~~A~~~a~~l~~~sP~al~~tk~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~D~~EGv  323 (379)
T PLN02874        244 KDTVEEIIKAFESEASKTGNEWIKETLKGLRRSSPTGLKITLRSIREGRKQSLAECLKKEFRLTMNILRSTVSDDVYEGI  323 (379)
T ss_pred             CCCHHHHHHHHhhcccccccHHHHHHHHHHHhcChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCcCcchhhcc
Confidence            001111111111         01122222222333 778889999999888999999999988888888   99999999


Q ss_pred             HHHH-Hh-hhhcCCC
Q 004972          281 HVFF-AQ-RATSKVP  293 (721)
Q Consensus       281 ~aF~-~~-r~~~~~~  293 (721)
                      ++|+ +| |+|++.+
T Consensus       324 ~AflidK~r~P~w~~  338 (379)
T PLN02874        324 RALVIDKDNAPKWNP  338 (379)
T ss_pred             ceEEEcCCCCCCCCC
Confidence            9997 78 7776644

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=100.00  E-value=4e-42  Score=383.69  Aligned_cols=252  Identities=15%  Similarity=0.139  Sum_probs=217.1

Q ss_pred             CCcEEEEEe-cCcEEEEEeCCCC-C-------------CCCCHHHHHHHHHHHHHHhc-CCCceEEEEEeCCC-CCcCCC
Q 004972            3 APRVTMEVG-NDGVAIITLINPP-V-------------NALAIPIVAGLKDKFEEATS-RDDVKAIVLTGNGG-RFSGGF   65 (721)
Q Consensus         3 ~~~v~~~~~-~~~v~~i~l~~p~-~-------------Nal~~~~~~~l~~~l~~~~~-~~~v~~vVltg~g~-~F~aG~   65 (721)
                      +++|.++.+ +++|++||||||+ .             |+||.+|+.+|.+++++++. |+++|+|||||.|+ .||+|+
T Consensus       259 ~~~~~v~~~~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~  338 (550)
T PRK08184        259 YRHVDVEIDRAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAA  338 (550)
T ss_pred             eEEEEEEEEccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCC
Confidence            455666554 5789999999995 5             79999999999999999986 79999999999994 999999


Q ss_pred             CchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEEC-Ccccccc-hHhhhhcCEEEee-------CCceEeCccc
Q 004972           66 DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE-GLALGGG-LELAMGCHARIAA-------PKTQLGLPEL  136 (721)
Q Consensus        66 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav~-G~a~GgG-~~lalacD~ria~-------~~a~~~~pe~  136 (721)
                      |++.+.. .............+..+ ..|.++||||||+|| |+|+||| ++|+|+||+||++       ++++|++||+
T Consensus       339 Dl~~~~~-~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~pe~  416 (550)
T PRK08184        339 DATLLAH-KDHWLVRETRGYLRRTL-KRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITLSAL  416 (550)
T ss_pred             Chhhhcc-cchHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEECccc
Confidence            9874321 11100111122333455 668999999999997 9999999 9999999999999       9999999999


Q ss_pred             ccCcccc---ccccccc-cCHHHHHHH--HHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhc
Q 004972          137 TLGVIPG---TQRLPRL-VGLSKAIEM--MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHR  210 (721)
Q Consensus       137 ~~Gl~P~---~~~l~r~-~G~~~a~~l--~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~  210 (721)
                      ++|++|+   +++|+|+ +|..+|+++  ++||++++|+||+++||||+|||++++++++.++++++++.||.+      
T Consensus       417 ~~Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia~~~p~a------  490 (550)
T PRK08184        417 NFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDDIDWEDEVRIALEERASLSPDA------  490 (550)
T ss_pred             cccCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHHHHHcCCcccccChHHHHHHHHHHHHHHHhCCHHH------
Confidence            9999997   8999998 799999997  589999999999999999999999999999999999999998753      


Q ss_pred             cCCCCCcHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHH-HHHHHHHHHHHhCCHHHHH---HHHHHHHh
Q 004972          211 TDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSG-VLKEAKVFKELVMLDTSRG---LVHVFFAQ  286 (721)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~i~~~~~~~~~~~-l~~E~~~~~~~~~s~~~~~---~i~aF~~~  286 (721)
                                                    ...+|++++.+...+++++ +..|.+.|..+++|+|++|   ++++|++|
T Consensus       491 ------------------------------~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ek  540 (550)
T PRK08184        491 ------------------------------LTGMEANLRFAGPETMETRIFGRLTAWQNWIFQRPNAVGEKGALKVYGTG  540 (550)
T ss_pred             ------------------------------HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCcccccchHHHHhccC
Confidence                                          3356788888889999999 9999999999999999999   99999999


Q ss_pred             hhhcCC
Q 004972          287 RATSKV  292 (721)
Q Consensus       287 r~~~~~  292 (721)
                      |++...
T Consensus       541 r~~~f~  546 (550)
T PRK08184        541 QKAQFD  546 (550)
T ss_pred             CCCCCC
Confidence            998753

>PRK08290 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1e-41  Score=356.20  Aligned_cols=237  Identities=25%  Similarity=0.293  Sum_probs=202.5

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCC---
Q 004972            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA---   76 (721)
Q Consensus         1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~---   76 (721)
                      |+++.+.++. +++|++||||||+ .|++|.+|+++|.+++++++.|+++++|||||.|++||+|+|++++......   
T Consensus         1 ~~~~~v~~~~-~~~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~   79 (288)
T PRK08290          1 MEYEYVRYEV-AGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPG   79 (288)
T ss_pred             CCCceEEEEe-eCCEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCccccccccccccc
Confidence            8999999999 7899999999996 6999999999999999999999999999999999999999999987421110   


Q ss_pred             --------------Cccc-cc---chHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCccccc
Q 004972           77 --------------GDVS-LM---PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTL  138 (721)
Q Consensus        77 --------------~~~~-~~---~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~  138 (721)
                                    .... .+   ...+.+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~l  158 (288)
T PRK08290         80 PDQHPTLWWDGATKPGVEQRYAREWEVYLGMC-RRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRM  158 (288)
T ss_pred             cccccccccccccccchhhHHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCccccc
Confidence                          0000 01   01122334 56889999999999999999999999999999999999999999999


Q ss_pred             Ccccc-ccccccccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCc
Q 004972          139 GVIPG-TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSL  217 (721)
Q Consensus       139 Gl~P~-~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~  217 (721)
                      |+.+. ++++++++|..++++|++||++++|+||+++||||+|||++++++++.++++++++.++..+            
T Consensus       159 Gl~~~~~~~l~~~iG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~------------  226 (288)
T PRK08290        159 GIPGVEYFAHPWELGPRKAKELLFTGDRLTADEAHRLGMVNRVVPRDELEAETLELARRIAAMPPFGL------------  226 (288)
T ss_pred             CcCcchHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHhCCHHHH------------
Confidence            98433 67789999999999999999999999999999999999999999999999999999886432            


Q ss_pred             HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHh-CCHH
Q 004972          218 SEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVH-GGYSGVLKEAKVFKELV-MLDT  275 (721)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~i~~~~~~-~~~~~l~~E~~~~~~~~-~s~~  275 (721)
                                              ..+|+.++..... ++++++..|...+...+ ++++
T Consensus       227 ------------------------~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (288)
T PRK08290        227 ------------------------RLTKRAVNQTLDAQGFRAALDAVFDLHQLGHAHNAE  262 (288)
T ss_pred             ------------------------HHHHHHHHHHHhhccHHHHHHHHHHHHHHccccchh
Confidence                                    3456677776665 68999999999999888 6776

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=100.00  E-value=5e-42  Score=381.34  Aligned_cols=251  Identities=16%  Similarity=0.128  Sum_probs=216.4

Q ss_pred             CCcEEEEEe-cCcEEEEEeCCCC-C-------------CCCCHHHHHHHHHHHHHHh-cCCCceEEEEEeCCCC-CcCCC
Q 004972            3 APRVTMEVG-NDGVAIITLINPP-V-------------NALAIPIVAGLKDKFEEAT-SRDDVKAIVLTGNGGR-FSGGF   65 (721)
Q Consensus         3 ~~~v~~~~~-~~~v~~i~l~~p~-~-------------Nal~~~~~~~l~~~l~~~~-~~~~v~~vVltg~g~~-F~aG~   65 (721)
                      +.+|.+..+ +++|++||||||+ .             |+|+.+|+.+|.+++..++ +|+++|+|||||.|+. ||+|+
T Consensus       255 ~~~~~v~~~~~~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~  334 (546)
T TIGR03222       255 YPTVDVAIDRAARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAA  334 (546)
T ss_pred             eeeEEEEEeccCCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCc
Confidence            344555443 6889999999994 7             9999999999999999998 4599999999999987 99999


Q ss_pred             CchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEE-CCcccccc-hHhhhhcCEEEe-------eCCceEeCccc
Q 004972           66 DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV-EGLALGGG-LELAMGCHARIA-------APKTQLGLPEL  136 (721)
Q Consensus        66 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav-~G~a~GgG-~~lalacD~ria-------~~~a~~~~pe~  136 (721)
                      |++.+.. .............++++ ..|.++||||||+| ||+|+||| ++|+++||+||+       +++++|++||+
T Consensus       335 Dl~~~~~-~~~~~~~~~~~~~~~~~-~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~  412 (546)
T TIGR03222       335 DALLEAH-KDHWFVRETIGYLRRTL-ARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAITLSEL  412 (546)
T ss_pred             Ccccccc-ccchhHHHHHHHHHHHH-HHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCcc
Confidence            9984321 11111111112233455 66999999999999 89999999 999999999999       89999999999


Q ss_pred             ccCcccc---cccccccc-CHHHH--HHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhc
Q 004972          137 TLGVIPG---TQRLPRLV-GLSKA--IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHR  210 (721)
Q Consensus       137 ~~Gl~P~---~~~l~r~~-G~~~a--~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~  210 (721)
                      ++|++|+   +++|+|++ |..++  ++|++||++++|+||+++|||++|+|++++++++.++++++++.+|.++     
T Consensus       413 ~lGl~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~-----  487 (546)
T TIGR03222       413 NFGLYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDDIDWEDEIRIALEERASFSPDAL-----  487 (546)
T ss_pred             ccccCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCchHHHHHHHHHHHHHHhcCHHHH-----
Confidence            9999997   89999998 99999  5599999999999999999999999999999999999999999987533     


Q ss_pred             cCCCCCcHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHH-HHHHHHHHHHHhCCHHHHH---HHHHHHHh
Q 004972          211 TDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSG-VLKEAKVFKELVMLDTSRG---LVHVFFAQ  286 (721)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~i~~~~~~~~~~~-l~~E~~~~~~~~~s~~~~~---~i~aF~~~  286 (721)
                                                     ..+|++++.+...+++.+ +..|.+.|..++.|+|++|   ++++|++|
T Consensus       488 -------------------------------~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ek  536 (546)
T TIGR03222       488 -------------------------------TGLEANLRFAGPETMETRIFGRLTAWQNWIFNRPNAVGENGALKVYGSG  536 (546)
T ss_pred             -------------------------------HHHHHHHhhcCCcChhhhHHHHHHHHHHHHhcCCcccchhhHHHHHccC
Confidence                                           355778888888999999 9999999999999999999   99999999


Q ss_pred             hhhcC
Q 004972          287 RATSK  291 (721)
Q Consensus       287 r~~~~  291 (721)
                      |++..
T Consensus       537 r~p~f  541 (546)
T TIGR03222       537 KKAQF  541 (546)
T ss_pred             CCCCC
Confidence            99864

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=100.00  E-value=2.1e-42  Score=322.40  Aligned_cols=242  Identities=29%  Similarity=0.458  Sum_probs=217.0

Q ss_pred             cCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEe-CCCCCcCCCCchhhhhccCCCcccccchHHHHH
Q 004972           12 NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTG-NGGRFSGGFDINVFQKVHGAGDVSLMPDVSVEL   89 (721)
Q Consensus        12 ~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg-~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~   89 (721)
                      +.||.+|-+||| +.|+++..|+++|.++++++..|+.+|+|+|++ .++.||+|+||++-...+. .++..+......+
T Consensus        38 ~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~-~Ev~~fV~~lR~~  116 (291)
T KOG1679|consen   38 DEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSP-SEVTRFVNGLRGL  116 (291)
T ss_pred             CCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCH-HHHHHHHHHHHHH
Confidence            678999999999 689999999999999999999999999999975 5688999999999876543 2344444555566


Q ss_pred             HHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHHHHHcCCCc
Q 004972           90 VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSI  166 (721)
Q Consensus        90 ~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~l~ltg~~~  166 (721)
                      + ..|+++|.||||+|+|.++|||+||+|+||+|++++++++|++|.+++++||   |+||||.+|...|+||++|++.+
T Consensus       117 ~-~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg~alaKELIftarvl  195 (291)
T KOG1679|consen  117 F-NDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVGVALAKELIFTARVL  195 (291)
T ss_pred             H-HHHHhCCccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHhHHHHHhHhhhheec
Confidence            6 6699999999999999999999999999999999999999999999999998   99999999999999999999999


Q ss_pred             CHHHHHHcCCccEEcCCc----hHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChhHH
Q 004972          167 TSEEGWKLGLIDAVVTSE----ELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ  242 (721)
Q Consensus       167 ~a~eA~~~Glv~~vv~~~----~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  242 (721)
                      ++.||..+||||+||...    ...+.+.++|++|.-+.|.                                    |+.
T Consensus       196 ~g~eA~~lGlVnhvv~qneegdaa~~kal~lA~eilp~gPi------------------------------------avr  239 (291)
T KOG1679|consen  196 NGAEAAKLGLVNHVVEQNEEGDAAYQKALELAREILPQGPI------------------------------------AVR  239 (291)
T ss_pred             cchhHHhcchHHHHHhcCccccHHHHHHHHHHHHhccCCch------------------------------------hhh
Confidence            999999999999999764    6777788888888766553                                    344


Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          243 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       243 ~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                      .+|.+|+.+.+.++..++..|...+++...+.|--+++.+|.+||+|.-
T Consensus       240 ~aKlAIn~G~evdiasgl~iEe~CYaq~i~t~drLeglaaf~ekr~p~y  288 (291)
T KOG1679|consen  240 LAKLAINLGMEVDIASGLSIEEMCYAQIIPTKDRLEGLAAFKEKRKPEY  288 (291)
T ss_pred             HHHHHhccCceecccccccHHHHHHHhcCcHHHHHHHHHHHHhhcCCCc
Confidence            5678899999999999999999999999999999999999999999864

>PRK05869 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=2.9e-41  Score=339.70  Aligned_cols=199  Identities=30%  Similarity=0.473  Sum_probs=176.8

Q ss_pred             CcEEEEEe----cCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcc
Q 004972            4 PRVTMEVG----NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (721)
Q Consensus         4 ~~v~~~~~----~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   79 (721)
                      ++|.++..    +++|++||||||+.|++|.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++..... ...
T Consensus         3 ~~~~~~~~~~~~~~~i~~itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~-~~~   81 (222)
T PRK05869          3 EFVNVVVSDGSQDAGLATLLLSRPPTNALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSA-QEA   81 (222)
T ss_pred             cchhhhcccCcccCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccCh-hhH
Confidence            55666663    4889999999998899999999999999999999999999999999999999999999754321 111


Q ss_pred             cccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHH
Q 004972           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKA  156 (721)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a  156 (721)
                      ....+..++++ +++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +.++++++|..++
T Consensus        82 ~~~~~~~~~~~-~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a  160 (222)
T PRK05869         82 DTAARVRQQAV-DAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSRA  160 (222)
T ss_pred             HHHHHHHHHHH-HHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhCHHHH
Confidence            11222334556 6689999999999999999999999999999999999999999999999997   6889999999999


Q ss_pred             HHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchh
Q 004972          157 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPW  204 (721)
Q Consensus       157 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~  204 (721)
                      ++++++|++++|+||+++||||+|+|++++++++.++++++++.+|..
T Consensus       161 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a  208 (222)
T PRK05869        161 KELVFSGRFFDAEEALALGLIDEMVAPDDVYDAAAAWARRFLDGPPHA  208 (222)
T ss_pred             HHHHHcCCCcCHHHHHHCCCCCEeeCchHHHHHHHHHHHHHHcCCHHH
Confidence            999999999999999999999999999999999999999999988753

>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=7.2e-41  Score=359.99  Aligned_cols=245  Identities=21%  Similarity=0.325  Sum_probs=203.6

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCccccc
Q 004972            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM   82 (721)
Q Consensus         4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (721)
                      +.|.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++............
T Consensus        37 ~~V~~e~-~g~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~  115 (401)
T PLN02157         37 YQVLVEG-SGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAI  115 (401)
T ss_pred             CceEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHH
Confidence            4588888 7899999999995 6999999999999999999999999999999999999999999998643211111111


Q ss_pred             chHH---HHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHH
Q 004972           83 PDVS---VELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKA  156 (721)
Q Consensus        83 ~~~~---~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a  156 (721)
                      ...+   ..++ ..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|+|++|. .+
T Consensus       116 ~~~~~~~~~l~-~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~-~a  193 (401)
T PLN02157        116 REFFSSLYSFI-YLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGR-LG  193 (401)
T ss_pred             HHHHHHHHHHH-HHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhhH-HH
Confidence            1111   1233 5689999999999999999999999999999999999999999999999997   8999999995 89


Q ss_pred             HHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004972          157 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  236 (721)
Q Consensus       157 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (721)
                      ++|++||++++|+||+++||||++||++++ +++.+++.+++..+|..                                
T Consensus       194 ~~L~LTG~~i~A~eA~~~GLv~~vVp~~~l-~~~~~~~~~i~~~~p~a--------------------------------  240 (401)
T PLN02157        194 EYLGLTGLKLSGAEMLACGLATHYIRSEEI-PVMEEQLKKLLTDDPSV--------------------------------  240 (401)
T ss_pred             HHHHHcCCcCCHHHHHHcCCceEEeCHhHH-HHHHHHHHHHHcCCHHH--------------------------------
Confidence            999999999999999999999999999998 67779999988766432                                


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHH---HHhhhh
Q 004972          237 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVF---FAQRAT  289 (721)
Q Consensus       237 ~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF---~~~r~~  289 (721)
                          +..+|+.+... ..+...++..|...+..++.+++.++.+.+|   .+||++
T Consensus       241 ----v~~~k~~~~~~-~~~~~~~l~~~~~~i~~~f~~~d~~ei~~al~~~~~kr~~  291 (401)
T PLN02157        241 ----VESCLEKCAEV-AHPEKTGVIRRIDLLEKCFSHDTVEEIIDSLEIEAGRRKD  291 (401)
T ss_pred             ----HHHHHHHHhcc-cCCcchhHHHHHHHHHHHhcCCCHHHHHHHHHhhhcccch
Confidence                22344455443 2345567788899999999999999999999   554443

>PRK08272 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3e-40  Score=348.47  Aligned_cols=202  Identities=26%  Similarity=0.354  Sum_probs=175.9

Q ss_pred             CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCC---
Q 004972            2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG---   77 (721)
Q Consensus         2 ~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~---   77 (721)
                      ++++|.++. +++|++||||||+ .|++|.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++.......   
T Consensus         8 ~~~~v~~e~-~~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~   86 (302)
T PRK08272          8 NLKTMTYEV-TGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGG   86 (302)
T ss_pred             CCCeEEEEe-ECCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhcccccccc
Confidence            467899998 7899999999995 79999999999999999999999999999999999999999999985422110   


Q ss_pred             c----------------ccc-----cchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCccc
Q 004972           78 D----------------VSL-----MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPEL  136 (721)
Q Consensus        78 ~----------------~~~-----~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~  136 (721)
                      .                ...     ......+++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~  165 (302)
T PRK08272         87 GAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGF-MSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPT  165 (302)
T ss_pred             cccccccccccccccccccchhhHHHHHHHHHHH-HHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcch
Confidence            0                000     011223445 568899999999999999999999999999999999999999999


Q ss_pred             ccCccccccccccccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhh
Q 004972          137 TLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWI  205 (721)
Q Consensus       137 ~~Gl~P~~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~  205 (721)
                      ++|.+|++.++++++|.++|++|++||++++|+||+++||||+|||++++++++.++|++|++.+|..+
T Consensus       166 ~~gg~~~~~~~~~~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~la~~ia~~~~~a~  234 (302)
T PRK08272        166 RVWGVPATGMWAYRLGPQRAKRLLFTGDCITGAQAAEWGLAVEAVPPEELDERTERLVERIAAVPVNQL  234 (302)
T ss_pred             hcccCChHHHHHHHhhHHHHHHHHHcCCccCHHHHHHcCCCceecCHHHHHHHHHHHHHHHHcCCHHHH
Confidence            986667766788899999999999999999999999999999999999999999999999999887544

>PLN02988 3-hydroxyisobutyryl-CoA hydrolase

Probab=100.00  E-value=2.5e-39  Score=347.34  Aligned_cols=288  Identities=21%  Similarity=0.293  Sum_probs=221.4

Q ss_pred             CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCccc
Q 004972            2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS   80 (721)
Q Consensus         2 ~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~   80 (721)
                      +.+.|.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++..........
T Consensus         7 ~~~~v~~~~-~~~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~   85 (381)
T PLN02988          7 SQSQVLVEE-KSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWR   85 (381)
T ss_pred             cCCceEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchh
Confidence            456788888 7899999999996 69999999999999999999999999999999999999999999985321111100


Q ss_pred             ccchHH---HHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHH
Q 004972           81 LMPDVS---VELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLS  154 (721)
Q Consensus        81 ~~~~~~---~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~  154 (721)
                      .....+   ..+. ..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|+|++|. 
T Consensus        86 ~~~~~f~~~~~l~-~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~-  163 (381)
T PLN02988         86 LGANFFSDEYMLN-YVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGF-  163 (381)
T ss_pred             HHHHHHHHHHHHH-HHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHH-
Confidence            001111   1222 4688999999999999999999999999999999999999999999999997   8999999997 


Q ss_pred             HHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhcc---CC------------------
Q 004972          155 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRT---DK------------------  213 (721)
Q Consensus       155 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~---~~------------------  213 (721)
                      .+++|++||++++|++|+++||||++||++++.+.+.+++ +++..+|.......+.   ..                  
T Consensus       164 ~~~~l~LTG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~la-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f  242 (381)
T PLN02988        164 FGEYVGLTGARLDGAEMLACGLATHFVPSTRLTALEADLC-RIGSNDPTFASTILDAYTQHPRLKPQSAYHRLDVIDRCF  242 (381)
T ss_pred             HHHHHHHcCCCCCHHHHHHcCCceEecCHhHHHHHHHHHH-HhhccCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHh
Confidence            6899999999999999999999999999999999888888 6665544333221110   00                  


Q ss_pred             -CCCcHHHHHHHHH---------HHHHHHHhCCCCh-hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC---CHHHHHH
Q 004972          214 -LGSLSEAREVLKL---------ARLQAKKTAPNMP-QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVM---LDTSRGL  279 (721)
Q Consensus       214 -~~~~~~~~~~~~~---------~~~~~~~~~~~~~-A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~---s~~~~~~  279 (721)
                       ..++.+..+.+..         ++...+.....-| +...+.+.++++...++.+.++.|.+.-..++.   ++|+.||
T Consensus       243 ~~~~~~~i~~~L~~~~~~~~~~wa~~~~~~l~~~sP~sl~vt~~~~~~~~~~sl~e~~~~e~~~~~~~~~~~~~~DF~EG  322 (381)
T PLN02988        243 SRRTVEEIISALEREATQEADGWISATIQALKKASPASLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGEISKDFVEG  322 (381)
T ss_pred             CCCCHHHHHHHHHhhccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCchHHHh
Confidence             0011111111111         1111122222233 456778899999999999999999999999998   6999999


Q ss_pred             HHHHHH-h-hhhcCCC
Q 004972          280 VHVFFA-Q-RATSKVP  293 (721)
Q Consensus       280 i~aF~~-~-r~~~~~~  293 (721)
                      |+|-+= | ++|+|+|
T Consensus       323 VRA~LiDKd~~P~W~p  338 (381)
T PLN02988        323 CRAILVDKDKNPKWEP  338 (381)
T ss_pred             HHHHhcCCCCCCCCCC
Confidence            998876 3 3455444

>PRK08788 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=1.4e-39  Score=337.51  Aligned_cols=245  Identities=21%  Similarity=0.244  Sum_probs=194.4

Q ss_pred             CcEEEEEe-cCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhc-----CCCceEEEEEeC-CCCCcCCCCchhhhhccC
Q 004972            4 PRVTMEVG-NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATS-----RDDVKAIVLTGN-GGRFSGGFDINVFQKVHG   75 (721)
Q Consensus         4 ~~v~~~~~-~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~-----~~~v~~vVltg~-g~~F~aG~Dl~~~~~~~~   75 (721)
                      .++.++.+ +++|++|||| | +.|++|.+|+.+|.++++++++     |+++++|||||. |++||+|+|++++.....
T Consensus        15 ~~~~i~~e~~~~ia~itl~-p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~   93 (287)
T PRK08788         15 SQLRVYYEEERNVMWMYMR-AQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIR   93 (287)
T ss_pred             CceEEEEEccCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhcc
Confidence            34444443 6889999996 6 6899999999999999999998     899999999999 789999999998753211


Q ss_pred             CCcccccchHH---HHHHHHHHh---hCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccc
Q 004972           76 AGDVSLMPDVS---VELVVNLIE---DCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQR  146 (721)
Q Consensus        76 ~~~~~~~~~~~---~~~~~~~l~---~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~  146 (721)
                      ......+....   .+.+ ..+.   .+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++
T Consensus        94 ~~~~~~~~~~~~~~~~~~-~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~~  172 (287)
T PRK08788         94 AGDRDALLAYARACVDGV-HAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSF  172 (287)
T ss_pred             ccchHHHHHHHHHHHHHH-HHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHHH
Confidence            11111111111   1222 2233   799999999999999999999999999999999999999999999997   789


Q ss_pred             cccccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHH
Q 004972          147 LPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKL  226 (721)
Q Consensus       147 l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (721)
                      +++++|..+|++|++||+.++|+||+++||||+++|++++++++.+++++|+.. +...                     
T Consensus       173 l~~~vG~~~A~ellltG~~l~A~eA~~~GLV~~vv~~~el~~~a~~~a~~ia~~-~~~~---------------------  230 (287)
T PRK08788        173 LARRVGPKLAEELILSGKLYTAEELHDMGLVDVLVEDGQGEAAVRTFIRKSKRK-LNGW---------------------  230 (287)
T ss_pred             HHHHhhHHHHHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHhcC-ccHH---------------------
Confidence            999999999999999999999999999999999999999999999999999976 3211                     


Q ss_pred             HHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHH-HHHHHHHHHHhh
Q 004972          227 ARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDT-SRGLVHVFFAQR  287 (721)
Q Consensus       227 ~~~~~~~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~-~~~~i~aF~~~r  287 (721)
                                     ..+|+..+.....++++.++.|...+..++++.+ ..+-|..|....
T Consensus       231 ---------------~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (287)
T PRK08788        231 ---------------RAMLRARRRVNPLSLEELMDITEIWVDAALQLEEKDLRTMERLVRAQ  277 (287)
T ss_pred             ---------------HHHHHHHHhhccCCHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence                           1223333333446788889988887777666654 556677776543

>PRK06213 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.7e-40  Score=333.10  Aligned_cols=197  Identities=28%  Similarity=0.385  Sum_probs=173.5

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCccc
Q 004972            1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS   80 (721)
Q Consensus         1 m~~~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~   80 (721)
                      |+ +.+.++. +++|++||||||+.|++|.+|+.+|.++++.++  +++++||+||.|++||+|+|++++...  .....
T Consensus         1 ~~-~~i~~~~-~~~v~~itln~~~~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g~~F~~G~Dl~~~~~~--~~~~~   74 (229)
T PRK06213          1 MS-ELVSYTL-EDGVATITLDDGKVNALSPAMIDALNAALDQAE--DDRAVVVITGQPGIFSGGFDLKVMTSG--AQAAI   74 (229)
T ss_pred             Cc-ceEEEEe-cCCEEEEEeCCCCCCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCCCceEcCcCHHHHhcc--hHhHH
Confidence            54 4688888 789999999999889999999999999999998  567999999999999999999988542  11111


Q ss_pred             ccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCC-ceEeCcccccCcccc---ccccccccCHHHH
Q 004972           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPG---TQRLPRLVGLSKA  156 (721)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~-a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a  156 (721)
                      .+.....+++ +++.++||||||+|||+|+|||++|+++|||||++++ ++|++||+++|++|+   +.++++++|...+
T Consensus        75 ~~~~~~~~l~-~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~a  153 (229)
T PRK06213         75 ALLTAGSTLA-RRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSAF  153 (229)
T ss_pred             HHHHHHHHHH-HHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHHHH
Confidence            2223334555 6688999999999999999999999999999999999 999999999999754   6778899999999


Q ss_pred             HHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchh
Q 004972          157 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPW  204 (721)
Q Consensus       157 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~  204 (721)
                      ++|+++|++++|+||+++||||+|+|++++.+++.++++++++.++..
T Consensus       154 ~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a  201 (229)
T PRK06213        154 QRAVINAEMFDPEEAVAAGFLDEVVPPEQLLARAQAAARELAGLNMGA  201 (229)
T ss_pred             HHHHHcCcccCHHHHHHCCCceeccChHHHHHHHHHHHHHHhcCCHHH
Confidence            999999999999999999999999999999999999999999987653

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=100.00  E-value=2.8e-38  Score=335.36  Aligned_cols=263  Identities=25%  Similarity=0.347  Sum_probs=244.8

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  383 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  383 (721)
                      |++|+|||+|.||++||..|+++|++|++||++++.++.+..+++..+..+.+.|.++..+....+.++..++++ +.++
T Consensus         2 ~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~   81 (308)
T PRK06129          2 MGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA   81 (308)
T ss_pred             CcEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence            568999999999999999999999999999999999999999899889889999998877778888889988888 4679


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCCCH
Q 004972          384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA  463 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t~~  463 (721)
                      +||+||+|+|++.+.++.+++++.+.+++++++.|+||+++++++++.+.++.++++.||++|++.++++|++++..|++
T Consensus        82 ~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~~lveiv~~~~t~~  161 (308)
T PRK06129         82 DADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTEHLAGRERCLVAHPINPPYLIPVVEVVPAPWTAP  161 (308)
T ss_pred             CCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHHhcCCcccEEEEecCCCcccCceEEEeCCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCeeEEE-cCCCchhhhhhhhHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCC---ccHHHHHHhh--
Q 004972          464 QVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLP---IGPFQLLDLA--  535 (721)
Q Consensus       464 e~~~~~~~l~~~lG~~~v~v-~d~~gfi~nRl~~~~~~Ea~~l~~~G-v~~~~ID~a~-~~~G~p---~Gpf~~~D~~--  535 (721)
                      ++++.+++|++.+|++|+++ ++.+||++||++.++++||+.++++| +|+++||.++ .++|++   +|||.++|..  
T Consensus       162 ~~~~~~~~~~~~lG~~~v~v~~~~~G~i~nrl~~a~~~EA~~l~~~g~~~~~~id~~~~~~~g~~~~~~gp~~~~d~~~~  241 (308)
T PRK06129        162 ATLARAEALYRAAGQSPVRLRREIDGFVLNRLQGALLREAFRLVADGVASVDDIDAVIRDGLGLRWSFMGPFETIDLNAP  241 (308)
T ss_pred             HHHHHHHHHHHHcCCEEEEecCCCccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCccCcCHHHHHhcccc
Confidence            99999999999999999999 58999999999999999999999996 5999999999 889998   8999999987  


Q ss_pred             -chHHHHHHHHHHHHhCCCCCC-CcHHHHHHHHc
Q 004972          536 -GYGVAAATSKEFDKAFPDRSF-QSPLVDLLLKS  567 (721)
Q Consensus       536 -Gld~~~~~~~~l~~~~~~~~~-~~~~l~~~v~~  567 (721)
                       |++.+......++.++.+..+ |+|++++|+++
T Consensus       242 ~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~~  275 (308)
T PRK06129        242 GGVADYAQRYGPMYRRMAAERGQPVPWDGELVAR  275 (308)
T ss_pred             ccHHHHHHHHHHHHHhhccccCCCchhhHHHHHH
Confidence             899999999999988877555 88888888873

>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=1.4e-37  Score=334.06  Aligned_cols=278  Identities=22%  Similarity=0.256  Sum_probs=212.6

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCc---c
Q 004972            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD---V   79 (721)
Q Consensus         4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~---~   79 (721)
                      +.|.++. .+++++||||||+ .|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++........   .
T Consensus        42 ~~v~~e~-~~~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~  120 (407)
T PLN02851         42 DQVLVEG-RAKSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEEC  120 (407)
T ss_pred             CCeEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHHH
Confidence            4577888 7899999999996 699999999999999999999999999999999999999999999865321111   1


Q ss_pred             cccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHH
Q 004972           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKA  156 (721)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a  156 (721)
                      ..+......+. ..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|+|+.|. .+
T Consensus       121 ~~~f~~~~~l~-~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~-~g  198 (407)
T PLN02851        121 KLFFENLYKFV-YLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGY-LG  198 (407)
T ss_pred             HHHHHHHHHHH-HHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCH-HH
Confidence            11112222333 5678999999999999999999999999999999999999999999999997   8899999997 49


Q ss_pred             HHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhh----hcc------------------CCC
Q 004972          157 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL----HRT------------------DKL  214 (721)
Q Consensus       157 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~----~~~------------------~~~  214 (721)
                      .+|++||++++|++|+++||+|++||.+++ +.+.+.+.++...++..+...    ...                  =..
T Consensus       199 ~~L~LTG~~i~a~eA~~~GLa~~~v~~~~l-~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~F~~  277 (407)
T PLN02851        199 EYLALTGQKLNGVEMIACGLATHYCLNARL-PLIEERLGKLLTDDPAVIEDSLAQYGDLVYPDKSSVLHKIETIDKCFGH  277 (407)
T ss_pred             HHHHHhCCcCCHHHHHHCCCceeecCHhhH-HHHHHHHHhhccCCHHHHHHHHHHhccccCCCcccHHHHHHHHHHHhCC
Confidence            999999999999999999999999999887 556666655544332211110    000                  001


Q ss_pred             CCcHHHHHHHHH---------HHHHHHHhCCCCh-hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh---CCHHHHHHHH
Q 004972          215 GSLSEAREVLKL---------ARLQAKKTAPNMP-QHQACLDVIEEGIVHGGYSGVLKEAKVFKELV---MLDTSRGLVH  281 (721)
Q Consensus       215 ~~~~~~~~~~~~---------~~~~~~~~~~~~~-A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~---~s~~~~~~i~  281 (721)
                      .++.+....+..         +.+..+.....-| +...+.+.++++...++++.++.|.+.-..++   .++|+.|||+
T Consensus       278 ~sv~~I~~~L~~~~~~~~~~wa~~~~~~l~~~SP~Sl~vt~~~~~~~~~~sl~e~l~~E~~l~~~~~~~~~~~DF~EGVR  357 (407)
T PLN02851        278 DTVEEIIEALENEAASSYDEWCKKALKKIKEASPLSLKVTLQSIREGRFQTLDQCLAREYRISLCGVSKWVSGDFCEGVR  357 (407)
T ss_pred             CCHHHHHHHHHhcccccchHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCccchHHHHHH
Confidence            122222122111         1111122222233 56778889999999999999999999988887   4899999999


Q ss_pred             HHHH
Q 004972          282 VFFA  285 (721)
Q Consensus       282 aF~~  285 (721)
                      |-+=
T Consensus       358 A~LI  361 (407)
T PLN02851        358 ARLV  361 (407)
T ss_pred             HHhc
Confidence            8875

>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

Probab=100.00  E-value=1.1e-37  Score=324.63  Aligned_cols=188  Identities=25%  Similarity=0.356  Sum_probs=163.7

Q ss_pred             EEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcCCCCchhhhhccC--CCcccccchHHHHHH
Q 004972           15 VAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHG--AGDVSLMPDVSVELV   90 (721)
Q Consensus        15 v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~--~~~~~~~~~~~~~~~   90 (721)
                      +++||||||+ .|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++.....  ......+....++++
T Consensus        38 ~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~  117 (360)
T TIGR03200        38 NAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMV  117 (360)
T ss_pred             EEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHH
Confidence            4669999995 6999999999999999999999999999999999 69999999998865321  111111222233455


Q ss_pred             HHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHHHHHcCCCcC
Q 004972           91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSIT  167 (721)
Q Consensus        91 ~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~l~ltg~~~~  167 (721)
                       +.+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|++++|..+|++|+++|++++
T Consensus       118 -~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~s  196 (360)
T TIGR03200       118 -SAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWS  196 (360)
T ss_pred             -HHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCc
Confidence             6689999999999999999999999999999999999999999999999997   889999999999999999999999


Q ss_pred             HHHHHHcCCccEEcCCchH------------HHHHHHHHHHHHhcCch
Q 004972          168 SEEGWKLGLIDAVVTSEEL------------LKVSRLWALDIAARRKP  203 (721)
Q Consensus       168 a~eA~~~Glv~~vv~~~~l------------~~~a~~~a~~~a~~~~~  203 (721)
                      |+||+++||||+|||+.++            ++.+.++++.+...++.
T Consensus       197 A~EA~~~GLVd~VVp~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  244 (360)
T TIGR03200       197 AHKAKRLGIIMDVVPALKVDGKFVANPLVVTDRYLDEFGRIVHGEFKA  244 (360)
T ss_pred             HHHHHHcCChheecCchhcCcchhcCcccchHHHHHHHhHHhcCCCcc
Confidence            9999999999999999888            77788888777776543

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PLN02267 enoyl-CoA hydratase/isomerase family protein

Probab=100.00  E-value=7.7e-38  Score=318.46  Aligned_cols=195  Identities=25%  Similarity=0.345  Sum_probs=168.0

Q ss_pred             EEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCce-EEEEEeCCCCCcCCCCchhhhhccCCC-cccccc
Q 004972            6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVK-AIVLTGNGGRFSGGFDINVFQKVHGAG-DVSLMP   83 (721)
Q Consensus         6 v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~-~vVltg~g~~F~aG~Dl~~~~~~~~~~-~~~~~~   83 (721)
                      ++++. +++|++|+||||+.|++|.+|+++|.+++++++.|++++ +||++|.|++||+|+|++++....... ....+.
T Consensus         2 ~~~~~-~~~v~~i~Lnrp~~Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~   80 (239)
T PLN02267          2 CTLEK-RGNLFILTLTGDGEHRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMV   80 (239)
T ss_pred             ceeEe-cCCEEEEEeCCCCcCcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHH
Confidence            56777 789999999999889999999999999999999998875 777799999999999999875321111 111122


Q ss_pred             hHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEee-CCceEeCcccccCcc-cc--ccccccccCHHHH-HH
Q 004972           84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA-PKTQLGLPELTLGVI-PG--TQRLPRLVGLSKA-IE  158 (721)
Q Consensus        84 ~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~-~~a~~~~pe~~~Gl~-P~--~~~l~r~~G~~~a-~~  158 (721)
                      ..+..++ ..+.++||||||+|||+|+|||++|+++||+||++ ++++|++||+++|++ |+  +.++++++|..++ ++
T Consensus        81 ~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG~~~a~~~  159 (239)
T PLN02267         81 AKLRPLV-ADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSPAARRD  159 (239)
T ss_pred             HHHHHHH-HHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcChHHHHHH
Confidence            2334555 66899999999999999999999999999999998 568999999999996 76  7899999999999 69


Q ss_pred             HHHcCCCcCHHHHHHcCCccEEcCC-chHHHHHHHHHHHHHhcCc
Q 004972          159 MMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRK  202 (721)
Q Consensus       159 l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~~a~~~~  202 (721)
                      |+++|++++|+||+++||||+|+|+ +++++++.++|+++++.++
T Consensus       160 llltG~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~A~~ia~~~~  204 (239)
T PLN02267        160 VLLRAAKLTAEEAVEMGIVDSAHDSAEETVEAAVRLGEELAARKW  204 (239)
T ss_pred             HHHcCCcCCHHHHHHCCCcceecCCHHHHHHHHHHHHHHHhhccC
Confidence            9999999999999999999999985 6899999999999998754

>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]

Probab=100.00  E-value=3.6e-38  Score=297.12  Aligned_cols=251  Identities=24%  Similarity=0.338  Sum_probs=215.7

Q ss_pred             CCcEEEEE--ecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccC----
Q 004972            3 APRVTMEV--GNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG----   75 (721)
Q Consensus         3 ~~~v~~~~--~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~----   75 (721)
                      ++.+.+.+  ....|..+.|||| +.|++|..|+.|+.++++.+..||++|+|||+|+|++||+|+|+..+.....    
T Consensus        18 ~ksl~v~vk~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~~~~~~~~~~   97 (292)
T KOG1681|consen   18 YKSLEVSVKSAQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAGKHFCAGIDLNDMASDRILQPE   97 (292)
T ss_pred             cceeeeeecCCCCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCCcceecccCcchhhhhhccccc
Confidence            44444543  2566999999999 6899999999999999999999999999999999999999999877643211    


Q ss_pred             CCc-------ccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---cc
Q 004972           76 AGD-------VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQ  145 (721)
Q Consensus        76 ~~~-------~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~  145 (721)
                      ..+       ...++..++..+ ..|++||||+|++|||+|+|+|+.|..|||+|+++++|.|..-|+.+|+..+   .+
T Consensus        98 ~dd~aR~g~~lrr~Ik~~Q~~~-t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGTL~  176 (292)
T KOG1681|consen   98 GDDVARKGRSLRRIIKRYQDTF-TAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGTLN  176 (292)
T ss_pred             cchHhhhhHHHHHHHHHHHHHH-HHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhhHh
Confidence            111       223334455666 6799999999999999999999999999999999999999999999999987   79


Q ss_pred             ccccccC-HHHHHHHHHcCCCcCHHHHHHcCCccEEcC-CchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHH
Q 004972          146 RLPRLVG-LSKAIEMMLLSKSITSEEGWKLGLIDAVVT-SEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREV  223 (721)
Q Consensus       146 ~l~r~~G-~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~-~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  223 (721)
                      |||..+| ...++++.+|++.++|.||++.|||.+|+| .+++++.+..+|+.|+.++|.+.+                 
T Consensus       177 RlpkvVGn~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~~ll~~~l~mA~~Ia~KSpvaVq-----------------  239 (292)
T KOG1681|consen  177 RLPKVVGNQSLARELAFTARKFSADEALDSGLVSRVFPDKEELLNGALPMAELIASKSPVAVQ-----------------  239 (292)
T ss_pred             hhhHHhcchHHHHHHHhhhhhcchhhhhhcCcchhhcCCHHHHHhhhHHHHHHhccCCceeee-----------------
Confidence            9999999 999999999999999999999999999996 478999999999999999986432                 


Q ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhc
Q 004972          224 LKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS  290 (721)
Q Consensus       224 ~~~~~~~~~~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~  290 (721)
                                         .+|+.+..+.+++.++.|..-.-+-...+.|+|..+.+.+-++|+++.
T Consensus       240 -------------------gTK~~L~ysrehsv~~sLnyvatwNms~L~s~Dl~~av~a~m~k~k~~  287 (292)
T KOG1681|consen  240 -------------------GTKENLLYSREHSVEESLNYVATWNMSMLLSDDLVKAVMAQMEKLKTV  287 (292)
T ss_pred             -------------------chHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence                               456778888889999999888888888888999999999998876655

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=100.00  E-value=2e-36  Score=294.33  Aligned_cols=180  Identities=40%  Similarity=0.620  Sum_probs=161.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCCC
Q 004972          307 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD  386 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aD  386 (721)
                      ||+|||+|.||.+||..++.+|++|++||++++.++.+.+++++.++..++++.+++.+.+..+++++++++++.+.+||
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~~ad   80 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAVDAD   80 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGCTES
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHhhhh
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999998877999


Q ss_pred             EEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCCCHHHH
Q 004972          387 MVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVI  466 (721)
Q Consensus       387 lVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t~~e~~  466 (721)
                      +||||+||++++|+++|++|++++++++||+||||+++++++++.+.+|+||+|+|||+|++.+|+|||++++.|+++++
T Consensus        81 lViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~  160 (180)
T PF02737_consen   81 LVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLMPLVEVVPGPKTSPETV  160 (180)
T ss_dssp             EEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT--EEEEEE-TTS-HHHH
T ss_pred             eehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccCceEEEeCCCCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCeeEEEcCC
Q 004972          467 LDLMTVGKIIKKVPVVVGNC  486 (721)
Q Consensus       467 ~~~~~l~~~lG~~~v~v~d~  486 (721)
                      +.+..|++.+||.|++++|.
T Consensus       161 ~~~~~~~~~~gk~pv~v~D~  180 (180)
T PF02737_consen  161 DRVRALLRSLGKTPVVVKDT  180 (180)
T ss_dssp             HHHHHHHHHTT-EEEEEES-
T ss_pred             HHHHHHHHHCCCEEEEecCC
Confidence            99999999999999999873

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]

Probab=100.00  E-value=1.2e-36  Score=284.63  Aligned_cols=253  Identities=29%  Similarity=0.383  Sum_probs=199.9

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC--C-CCCcCCCCchhhhhccCCCc
Q 004972            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN--G-GRFSGGFDINVFQKVHGAGD   78 (721)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~--g-~~F~aG~Dl~~~~~~~~~~~   78 (721)
                      ++.|+++..-++|+.||+|||. +|++.+..+.||.+++..++.|++|.+|||||.  | .+||+|+|-+--.....-..
T Consensus        17 y~dI~Y~~~~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~   96 (282)
T COG0447          17 YEDITYEKSVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVD   96 (282)
T ss_pred             cceeEEeeccCceEEEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCccC
Confidence            4668888844899999999995 799999999999999999999999999999985  3 68999999875433110000


Q ss_pred             ccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHH
Q 004972           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSK  155 (721)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~  155 (721)
                      .....+...--+.+.|+.+||||||.|+|.++|||-.|-+.||+-||+++|+|+....++|-+-+   +..|.|.+|..+
T Consensus        97 d~~~~rLnvLdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~VGqKk  176 (282)
T COG0447          97 DDGIPRLNVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVGQKK  176 (282)
T ss_pred             CccCcccchhhHHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHhhhhh
Confidence            01111111111336789999999999999999999999999999999999999999999998876   899999999999


Q ss_pred             HHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004972          156 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  235 (721)
Q Consensus       156 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (721)
                      |+|+-+.++.++|+||+++|+||.|||.++|++++.+|++++.++||.+++-                            
T Consensus       177 ArEIwfLcR~Y~A~eal~MGlVN~Vvp~~~LE~e~v~W~~E~l~kSP~AlR~----------------------------  228 (282)
T COG0447         177 AREIWFLCRQYDAEEALDMGLVNTVVPHADLEKETVQWAREMLAKSPTALRM----------------------------  228 (282)
T ss_pred             hHHhhhhhhhccHHHHHhcCceeeeccHHHHHHHHHHHHHHHHhcChHHHHH----------------------------
Confidence            9999999999999999999999999999999999999999999999854331                            


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004972          236 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  292 (721)
Q Consensus       236 ~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  292 (721)
                              +|-+.+ ....++.-.-+....+-.-...++|++|+..||++||+|...
T Consensus       229 --------LK~Afn-ad~DGlaG~q~~ag~at~L~YmTdEa~EGr~AF~eKR~Pdf~  276 (282)
T COG0447         229 --------LKAAFN-ADCDGLAGLQELAGNATLLYYMTDEAQEGRDAFLEKRKPDFS  276 (282)
T ss_pred             --------HHHHhc-CCCchhhHHHHhcccceEEEEechhhhhhHHHHhhccCCChH
Confidence                    111111 111122111122223333456799999999999999998643

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=100.00  E-value=5.5e-35  Score=328.18  Aligned_cols=243  Identities=25%  Similarity=0.332  Sum_probs=207.7

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  383 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  383 (721)
                      ++||+|||+|+||++||..|+++|++|++||++++.++...+.++.......   .+... .....+++++++++ +.++
T Consensus         4 i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~---~l~~~-~~~~~g~i~~~~~~~ea~~   79 (495)
T PRK07531          4 IMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYA---MLTDA-PLPPEGRLTFCASLAEAVA   79 (495)
T ss_pred             cCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHh---hhccc-hhhhhhceEeeCCHHHHhc
Confidence            5789999999999999999999999999999999998765433222211111   11111 01123457778888 5789


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCCCH
Q 004972          384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA  463 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t~~  463 (721)
                      +||+||||+||+.++|+.+++++.+++++++||+|+||+++++++++.+..+.++++.|||||++.++++|+++++.|++
T Consensus        80 ~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lvevv~g~~t~~  159 (495)
T PRK07531         80 GADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTSP  159 (495)
T ss_pred             CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCceEEEcCCCCCCH
Confidence            99999999999999999999999999999999999999999999999998999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCeeEEE-cCCCchhhhhhhhHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCC---ccHHHHHHhhch
Q 004972          464 QVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLP---IGPFQLLDLAGY  537 (721)
Q Consensus       464 e~~~~~~~l~~~lG~~~v~v-~d~~gfi~nRl~~~~~~Ea~~l~~~G-v~~~~ID~a~-~~~G~p---~Gpf~~~D~~Gl  537 (721)
                      ++++.+.+|++.+|+.++++ ++.+||++||++.++++||+.++++| +|+++||+++ .++|++   +|||+++|+.|+
T Consensus       160 e~~~~~~~~~~~lG~~~v~~~k~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g~g~~~~~~Gpf~~~dl~g~  239 (495)
T PRK07531        160 ETIRRAKEILREIGMKPVHIAKEIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRWAQMGLFETYRIAGG  239 (495)
T ss_pred             HHHHHHHHHHHHcCCEEEeecCCCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccccchHHHHHhcCc
Confidence            99999999999999999999 69999999999999999999999996 6999999999 788875   799999999985


Q ss_pred             -HHHHHHHHHHHHhC
Q 004972          538 -GVAAATSKEFDKAF  551 (721)
Q Consensus       538 -d~~~~~~~~l~~~~  551 (721)
                       +.+.+.++++.+.+
T Consensus       240 ~~g~~~~~~~~~~~~  254 (495)
T PRK07531        240 EAGMRHFLAQFGPCL  254 (495)
T ss_pred             HHHHHHHHHHhchhh
Confidence             45566666665544

>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]

Probab=100.00  E-value=7.3e-35  Score=282.79  Aligned_cols=249  Identities=22%  Similarity=0.294  Sum_probs=218.9

Q ss_pred             CCCCcEEEEEecCcEEEEEeC-CCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCc
Q 004972            1 MAAPRVTMEVGNDGVAIITLI-NPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD   78 (721)
Q Consensus         1 m~~~~v~~~~~~~~v~~i~l~-~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~   78 (721)
                      |.++.+.++. .+++..|.+| ||+ .|+++.+++.++..++....+|+++..+|++|.|++||+|.|+..+......+ 
T Consensus         4 ~~~~~~vv~~-~~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d-   81 (266)
T KOG0016|consen    4 MRYREIVVTR-ENGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDD-   81 (266)
T ss_pred             ccccceEEEe-cCCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCCCc-
Confidence            4567788888 8999999999 995 69999999999999999999999999999999999999999999887643332 


Q ss_pred             ccccchHH----H--HHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---cccccc
Q 004972           79 VSLMPDVS----V--ELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPR  149 (721)
Q Consensus        79 ~~~~~~~~----~--~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r  149 (721)
                      ........    .  ..+.+.+.++|||+||.|||+|+|.|..+.-.||+++|+|+++|..|+.++|..|.   ++.+|+
T Consensus        82 ~~~~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~  161 (266)
T KOG0016|consen   82 ANEESDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPK  161 (266)
T ss_pred             ccccchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeehH
Confidence            11111111    1  12346788999999999999999999999999999999999999999999999997   899999


Q ss_pred             ccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHH
Q 004972          150 LVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARL  229 (721)
Q Consensus       150 ~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (721)
                      ++|...|.||++.|++++|+||.+.|||++++|.+++.+.+..-++++++.+|..++                       
T Consensus       162 imG~~~A~E~ll~~~kltA~Ea~~~glVskif~~~tf~~~v~~~ikq~s~l~p~sl~-----------------------  218 (266)
T KOG0016|consen  162 IMGSASANEMLLFGEKLTAQEACEKGLVSKIFPAETFNEEVLKKIKQYSKLSPESLL-----------------------  218 (266)
T ss_pred             hhchhhHHHHHHhCCcccHHHHHhcCchhhhcChHHHHHHHHHHHHHHhcCCHHHHH-----------------------
Confidence            999999999999999999999999999999999999999999999999998775332                       


Q ss_pred             HHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 004972          230 QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQR  287 (721)
Q Consensus       230 ~~~~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r  287 (721)
                                   .+|++++......+..+.+.|.......|.|+|+.+.+.+|+.+.
T Consensus       219 -------------~~K~L~rs~~k~~l~~an~~E~~~l~~~W~s~e~~~~~~~~~~~~  263 (266)
T KOG0016|consen  219 -------------GMKKLLRSNIKEELIKANEEECNVLLKQWVSAECLARFKQYLSKK  263 (266)
T ss_pred             -------------HHHHHHHHHHHHHHHHhhHHHHHHHHhhccChHHHHHHHHHhccc
Confidence                         346777777777889999999999999999999999999999764

>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]

Probab=100.00  E-value=1.4e-34  Score=267.77  Aligned_cols=246  Identities=23%  Similarity=0.334  Sum_probs=208.7

Q ss_pred             EEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHH
Q 004972            8 MEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVS   86 (721)
Q Consensus         8 ~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~   86 (721)
                      ++. +++|-.|+|++|+ +|.++.+|+.+|.+.+....++.++|+|||+..|+.||+|+||+|+......+.....+...
T Consensus        36 ~~~-~~gvR~i~l~npKk~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKELt~e~g~d~haevFqtc  114 (287)
T KOG1682|consen   36 VKE-HNGVREITLNNPKKLNTLSLAMMCALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKELTNEPGSDIHAEVFQTC  114 (287)
T ss_pred             ccc-ccceeeeeecCccccchhhHHHHHHHHHHHhhcccccceeEEEEecCCccccccccHHHhhcCccchHHHHHHHHH
Confidence            344 6899999999995 79999999999999999988888999999999999999999999997654333233333334


Q ss_pred             HHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc--ccccccccCHHHHHHHHHcCC
Q 004972           87 VELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG--TQRLPRLVGLSKAIEMMLLSK  164 (721)
Q Consensus        87 ~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~--~~~l~r~~G~~~a~~l~ltg~  164 (721)
                      .+.+ .-|+++|+|+||-|||.+..+||.|...||++|++++++|..|..++|++-.  -..+.|.+++..+++|++||+
T Consensus       115 ~dvm-n~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPGvAlaRavpRkva~~ML~Tg~  193 (287)
T KOG1682|consen  115 TDVM-NDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPGVALARAVPRKVAAYMLMTGL  193 (287)
T ss_pred             HHHH-HHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcchhHhhhcchhHHHHHHHhCC
Confidence            4556 4599999999999999999999999999999999999999999999999766  566889999999999999999


Q ss_pred             CcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 004972          165 SITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQAC  244 (721)
Q Consensus       165 ~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~  244 (721)
                      +++++||+..|||.+|||++++..++.+++..|-..+...+.                                    .-
T Consensus       194 Pi~~eeAl~sGlvskvVp~~el~~e~~~i~~~i~~~srav~s------------------------------------lg  237 (287)
T KOG1682|consen  194 PITGEEALISGLVSKVVPAEELDKEIEEITNAIKAKSRAVIS------------------------------------LG  237 (287)
T ss_pred             CCchHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhhhHHHHHH------------------------------------HH
Confidence            999999999999999999999999999999999887643221                                    11


Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          245 LDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       245 ~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                      |+-......++-.+++....+.+...++-.|++|+|.+|++||.+.+
T Consensus       238 k~f~y~q~~ms~~ea~~~~~~~m~~n~ql~d~kegiasf~~krp~~~  284 (287)
T KOG1682|consen  238 KEFYYKQLAMSQAEAFSAAQEKMCENFQLGDTKEGIASFFEKRPPNW  284 (287)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHhhcccccchHHHHHHHhccCCCCc
Confidence            22233334456677888888888899999999999999999998765

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=100.00  E-value=2.6e-34  Score=321.04  Aligned_cols=201  Identities=21%  Similarity=0.294  Sum_probs=172.8

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCC-----------CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEEeCC-CCCcCCCCc
Q 004972            1 MAAPRVTMEVGNDGVAIITLINP-----------PVNALAIPIVAGLKDKFEEAT-SRDDVKAIVLTGNG-GRFSGGFDI   67 (721)
Q Consensus         1 m~~~~v~~~~~~~~v~~i~l~~p-----------~~Nal~~~~~~~l~~~l~~~~-~~~~v~~vVltg~g-~~F~aG~Dl   67 (721)
                      |+++++.+++ +++|++||||||           +.|++|.+|+.+|.+++++++ +++++++|||||.+ ++||+|+|+
T Consensus        12 ~~~~~~~~e~-~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL   90 (550)
T PRK08184         12 SQYRHWKLSF-DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANI   90 (550)
T ss_pred             CCCceEEEEe-eCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCH
Confidence            6688999999 789999999954           569999999999999999999 78999999999974 899999999


Q ss_pred             hhhhhccCCCcccccch---HHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCC--ceEeCcccc-cCcc
Q 004972           68 NVFQKVHGAGDVSLMPD---VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELT-LGVI  141 (721)
Q Consensus        68 ~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~--a~~~~pe~~-~Gl~  141 (721)
                      +++....... ...+..   .....+.+.+.++||||||+|||+|+|||++|+++|||||++++  ++|++||++ +|++
T Consensus        91 ~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~  169 (550)
T PRK08184         91 FMLGGSSHAW-KVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVL  169 (550)
T ss_pred             HhHhccccch-hhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccC
Confidence            9875321111 001111   11122335677899999999999999999999999999999987  899999997 9999


Q ss_pred             cc---ccccc--cccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCch
Q 004972          142 PG---TQRLP--RLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKP  203 (721)
Q Consensus       142 P~---~~~l~--r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~  203 (721)
                      |+   +++++  +++|..+|++|+++|++++|+||+++||||+|||++++++++.++|++|++.+|.
T Consensus       170 P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~d~l~~~a~~~A~~ia~~~~~  236 (550)
T PRK08184        170 PGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKPSKFDAKVAERAAELAAASDR  236 (550)
T ss_pred             CCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCCCC
Confidence            97   77787  7899999999999999999999999999999999999999999999999998864

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=100.00  E-value=2.8e-34  Score=319.49  Aligned_cols=199  Identities=22%  Similarity=0.310  Sum_probs=170.1

Q ss_pred             CCcEEEEEecCcEEEEEeCCC-----------CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEEeC-CCCCcCCCCchh
Q 004972            3 APRVTMEVGNDGVAIITLINP-----------PVNALAIPIVAGLKDKFEEAT-SRDDVKAIVLTGN-GGRFSGGFDINV   69 (721)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p-----------~~Nal~~~~~~~l~~~l~~~~-~~~~v~~vVltg~-g~~F~aG~Dl~~   69 (721)
                      +++|.+++ +++|++||||||           +.|++|.+|+.+|.+++++++ .|+++|+|||||. |++||+|+|+++
T Consensus        10 ~~~v~~~~-~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~   88 (546)
T TIGR03222        10 YRHWKLTF-DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFM   88 (546)
T ss_pred             CceEEEEe-eCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHH
Confidence            46788998 789999999996           469999999999999999999 7899999999987 589999999998


Q ss_pred             hhhccCCCcccccchHHH---HHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCC--ceEeCcccc-cCcccc
Q 004972           70 FQKVHGAGDVSLMPDVSV---ELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELT-LGVIPG  143 (721)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~--a~~~~pe~~-~Gl~P~  143 (721)
                      +....... .........   ..+.+.+.++||||||+|||+|+|||++|+++||+||++++  ++|++||++ +|++|+
T Consensus        89 ~~~~~~~~-~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl~P~  167 (546)
T TIGR03222        89 LGLSTHAW-KVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLPG  167 (546)
T ss_pred             Hhccccch-hhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCcCCc
Confidence            75321111 011111111   12224577899999999999999999999999999999986  799999997 999997


Q ss_pred             ---ccccc--cccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCch
Q 004972          144 ---TQRLP--RLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKP  203 (721)
Q Consensus       144 ---~~~l~--r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~  203 (721)
                         +++++  +++|..+|++|+++|++++|+||+++||||+|||++++++++.++|+++++.+|.
T Consensus       168 ~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~p~  232 (546)
T TIGR03222       168 TGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAERAAELAAQSDR  232 (546)
T ss_pred             cchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeChHHHHHHHHHHHHHHHhCCCC
Confidence               67776  7999999999999999999999999999999999999999999999999998763

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=100.00  E-value=1.6e-34  Score=273.24  Aligned_cols=230  Identities=26%  Similarity=0.413  Sum_probs=213.0

Q ss_pred             CceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhh----cCCCCHHHHHHhhcCceeccCc
Q 004972          304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT----RGKLTQDKANNALKMLKGVLDY  379 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~i~~~~~~  379 (721)
                      .+.||+|+|.|.+|+++|..++..||+|.+||+.++++.-+.+.+++.+..+-+    +|.++.   ++.+..|+.++++
T Consensus         2 s~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa---~eqla~is~t~~l   78 (313)
T KOG2305|consen    2 SFGKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSA---DEQLALISGTTSL   78 (313)
T ss_pred             CccceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccH---HHHHHHHhCCccH
Confidence            367999999999999999999999999999999999999999998888887755    455654   4566788899998


Q ss_pred             -cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecC
Q 004972          380 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRT  458 (721)
Q Consensus       380 -~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~  458 (721)
                       +.+++|=.|-|||||++.+|++++++++..+.+.+|++|+||++.++...+.+.+.++++..||.|||+..|+||++|.
T Consensus        79 ~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~gL~~k~q~lvaHPvNPPyfiPLvElVPa  158 (313)
T KOG2305|consen   79 NELVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSAGLINKEQCLVAHPVNPPYFIPLVELVPA  158 (313)
T ss_pred             HHHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhhhhhhhhheeEecCCCCCcccchheeccC
Confidence             6789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCeeEEE-cCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCc---cHHHHH
Q 004972          459 ERTSAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPI---GPFQLL  532 (721)
Q Consensus       459 ~~t~~e~~~~~~~l~~~lG~~~v~v-~d~~gfi~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~G~p~---Gpf~~~  532 (721)
                      +-|+|+++++.+++++.+|..||.. ++.-||..||++++++||-.+++..|+ +..|+|.+| .|+|.+.   ||++.+
T Consensus       159 PwTsp~tVdrt~~lM~sigq~pV~l~rei~Gf~lnriq~Ailne~wrLvasGil~v~dvD~VmS~GLG~RYAflG~lET~  238 (313)
T KOG2305|consen  159 PWTSPDTVDRTRALMRSIGQEPVTLKREILGFALNRIQYAILNETWRLVASGILNVNDVDAVMSAGLGPRYAFLGPLETA  238 (313)
T ss_pred             CCCChhHHHHHHHHHHHhCCCCcccccccccceeccccHHHHHHHHHHHHccCcchhhHHHHHhcCCCcchhcccchhhh
Confidence            9999999999999999999999987 789999999999999999999999987 999999999 9999763   999998


Q ss_pred             Hhhc
Q 004972          533 DLAG  536 (721)
Q Consensus       533 D~~G  536 (721)
                      .+--
T Consensus       239 HLNA  242 (313)
T KOG2305|consen  239 HLNA  242 (313)
T ss_pred             hcCc
Confidence            8754

>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

Probab=100.00  E-value=3.4e-34  Score=284.54  Aligned_cols=189  Identities=44%  Similarity=0.701  Sum_probs=169.9

Q ss_pred             EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCc-ccccc
Q 004972            6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD-VSLMP   83 (721)
Q Consensus         6 v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~-~~~~~   83 (721)
                      +.+++ +++|++|+||+|+ .|++|.+|+++|.++++.++.|+++++|||||.++.||+|.|++++........ ...+.
T Consensus         1 i~~~~-~~~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~   79 (195)
T cd06558           1 VLVER-DGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFI   79 (195)
T ss_pred             CEEEE-ECCEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHH
Confidence            35677 6799999999997 799999999999999999999999999999999999999999999876433221 22344


Q ss_pred             hHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHHHH
Q 004972           84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMM  160 (721)
Q Consensus        84 ~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~l~  160 (721)
                      ....+++ +.+.++|||+||++||+|.|+|++++++|||||++++++|++||+++|++|+   +.++++++|...+.+++
T Consensus        80 ~~~~~~~-~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~  158 (195)
T cd06558          80 RELQELL-RALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELL  158 (195)
T ss_pred             HHHHHHH-HHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHH
Confidence            4455666 6688999999999999999999999999999999999999999999999976   89999999999999999


Q ss_pred             HcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHH
Q 004972          161 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALD  196 (721)
Q Consensus       161 ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~  196 (721)
                      ++|++++++||+++||||++++.+++.+++.+++++
T Consensus       159 l~g~~~~a~ea~~~Glv~~~~~~~~l~~~a~~~a~~  194 (195)
T cd06558         159 LTGRRISAEEALELGLVDEVVPDEELLAAALELARR  194 (195)
T ss_pred             HcCCccCHHHHHHcCCCCeecChhHHHHHHHHHHhh
Confidence            999999999999999999999999999999998875

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.

>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=99.97  E-value=3.1e-29  Score=252.90  Aligned_cols=288  Identities=23%  Similarity=0.308  Sum_probs=211.8

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC-CCCCcCCCCchhhhhccCCCcccc
Q 004972            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-GGRFSGGFDINVFQKVHGAGDVSL   81 (721)
Q Consensus         4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~   81 (721)
                      +.|.++. .+...+||||||+ .||+|.+|+..+.-.+..++.++.+++||+.|. +++||+|+|++.......+.+...
T Consensus        38 ~~VL~e~-~~~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~  116 (401)
T KOG1684|consen   38 DQVLVEG-KGCARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPE  116 (401)
T ss_pred             CceEEec-CCceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchH
Confidence            5688888 7889999999997 699999999999999999999999999999887 589999999986654332222111


Q ss_pred             cchHHHHH--HHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHH
Q 004972           82 MPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKA  156 (721)
Q Consensus        82 ~~~~~~~~--~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a  156 (721)
                      ....+.+.  +...|.++.||.||.+||.++|||+.|+...-||||++++.|++||+.+|++|+   +++++|+.| ...
T Consensus       117 ~~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlpg-~lg  195 (401)
T KOG1684|consen  117 VKKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLPG-YLG  195 (401)
T ss_pred             HHHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCccceeehhhCcc-HHH
Confidence            11222211  224688999999999999999999999999999999999999999999999998   899999999 889


Q ss_pred             HHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhh----hhc---------------cC---CC
Q 004972          157 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRS----LHR---------------TD---KL  214 (721)
Q Consensus       157 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~----~~~---------------~~---~~  214 (721)
                      .+|.+||+++++.+|+..||.++-||.+.+..--.++...+...+...+..    ...               -+   ..
T Consensus       196 ~YLgLTG~rl~GaD~~~~GlATHyv~S~~l~~Lee~L~~~l~~dp~~~I~~~l~~y~~~~~~~~~~~~~~~~~i~~~Fs~  275 (401)
T KOG1684|consen  196 LYLGLTGQRLSGADALRCGLATHYVPSEKLPSLEERLLKNLNDDPQSVINETLEKYASPAKDESFSLSLKLDVINKCFSA  275 (401)
T ss_pred             HhhhhccceecchHHHHhcchhhccchhhhhHHHHHHhhhcCCCcHHHHHHHHHHhcccCCCccccchhhHHHHHHhhcc
Confidence            999999999999999999999999998654322222221111111011110    000               00   01


Q ss_pred             CCcHHHHHHHH----------HHHHHHHHhCCCCh-hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004972          215 GSLSEAREVLK----------LARLQAKKTAPNMP-QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVF  283 (721)
Q Consensus       215 ~~~~~~~~~~~----------~~~~~~~~~~~~~~-A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF  283 (721)
                      .+..+..+.++          -+..+.|+...--| +...+.+.+.++...++++.+..|.+.-.+...+.|+.||++|-
T Consensus       276 ~tVeeIie~lk~~q~~~~~~ewak~tlk~L~k~SPtSLkvT~r~i~egs~~tl~~~l~~Eyr~s~~~~~~~DF~EGvRA~  355 (401)
T KOG1684|consen  276 NTVEEIIEALKNYQQSADGSEWAKETLKTLKKMSPTSLKVTLRQIREGSKQTLDQCLTMEYRLSLRMLMRGDFCEGVRAV  355 (401)
T ss_pred             ccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcCCchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchhhhhhhe
Confidence            12222222111          11112222223334 66778899999999999999999999999999999999999987


Q ss_pred             HH--hhhhcCCC
Q 004972          284 FA--QRATSKVP  293 (721)
Q Consensus       284 ~~--~r~~~~~~  293 (721)
                      +-  .++|+|.|
T Consensus       356 LIDKd~~PKW~p  367 (401)
T KOG1684|consen  356 LIDKDQNPKWDP  367 (401)
T ss_pred             eecCCcCCCCCC
Confidence            63  23344443

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=99.94  E-value=3.4e-26  Score=256.45  Aligned_cols=160  Identities=16%  Similarity=0.140  Sum_probs=147.8

Q ss_pred             CCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCch
Q 004972          410 CPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGF  489 (721)
Q Consensus       410 ~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~gf  489 (721)
                      +.+++++++..++.+.++.+....+|++++|+|||+|++.++++||+++..|++++++.+..|++.+||.|++++|.|||
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~Ts~e~~~~~~~~~~~~gk~pi~v~d~~Gf  417 (507)
T PRK08268        338 SADGLVLLAPTGGDTTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPATSPAARDAAHALFQQDGKAVSVIRDSPGF  417 (507)
T ss_pred             ccccceEeeccCcchHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEeCCCccH
Confidence            45677777777766667776666789999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHHHHHHHHHHhCCC-CCCCcHHHHHHHH
Q 004972          490 AVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPD-RSFQSPLVDLLLK  566 (721)
Q Consensus       490 i~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~-~~~~~~~l~~~v~  566 (721)
                      |+||++.+++|||++++++|+ +++|||.++ .++|||+|||+++|.+|+|.++++++.+++.+++ ++.|++++++|++
T Consensus       418 i~nRll~~~~nEa~~ll~eGvas~~dID~a~~~g~G~p~GP~~~~D~~Gld~~~~~~~~l~~~~g~~~~~p~~ll~~~v~  497 (507)
T PRK08268        418 VAQRTVAMIVNEAADIAQQGIASPADIDLAMRLGLNYPLGPLAWGDRLGAARILRVLENLQALYGDPRYRPSPWLRRRAA  497 (507)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhCHHHHHHHHHHHHHHhCCCcCCcCHHHHHHHH
Confidence            999999999999999999998 899999999 8999999999999999999999999999999987 4458999999999


Q ss_pred             cCC
Q 004972          567 SGR  569 (721)
Q Consensus       567 ~G~  569 (721)
                      +|.
T Consensus       498 ~G~  500 (507)
T PRK08268        498 LGL  500 (507)
T ss_pred             cCC
Confidence            875

>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1

Probab=99.91  E-value=1e-24  Score=190.68  Aligned_cols=94  Identities=40%  Similarity=0.689  Sum_probs=87.5

Q ss_pred             chhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHHHHHHHHHHhCCCCCC-CcHHHHHH
Q 004972          488 GFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSF-QSPLVDLL  564 (721)
Q Consensus       488 gfi~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~~-~~~~l~~~  564 (721)
                      |||+||++.++++||++++++|+ +|++||+++ .++|+|+|||+++|.+|+|++.++++.+.+.++++.+ |++++++|
T Consensus         1 GFi~nRl~~~~~~ea~~l~~egvas~~~ID~~~~~~~G~p~Gpf~l~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~m   80 (97)
T PF00725_consen    1 GFIVNRLLAALLNEAARLVEEGVASPEDIDRAMRYGLGFPMGPFELADLVGLDVVYHILEYLAAALGDRAFRPSPLLKEM   80 (97)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTHSSTHHHHHHHHHHHHHHHHHHHHHHHHCCGGGSS-HHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCccchHHHHhCchHHHHHHHHHHHhcCCCcCCchHHHHHH
Confidence            89999999999999999999995 999999999 7899999999999999999999999999999988855 79999999


Q ss_pred             HHcCCCCcccCcccccc
Q 004972          565 LKSGRNGKANGKGLYTY  581 (721)
Q Consensus       565 v~~G~~G~k~g~GfY~y  581 (721)
                      +++|++|+|+|+|||+|
T Consensus        81 v~~g~~G~k~g~Gfy~Y   97 (97)
T PF00725_consen   81 VEEGRLGRKSGKGFYDY   97 (97)
T ss_dssp             HHTT--BGGGTBSSSBE
T ss_pred             HHCCCCcCcCCCcceeC
Confidence            99999999999999998

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=99.86  E-value=2.5e-21  Score=216.60  Aligned_cols=119  Identities=16%  Similarity=0.175  Sum_probs=113.4

Q ss_pred             CeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccH
Q 004972          451 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGP  528 (721)
Q Consensus       451 ~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~gfi~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~G~p~Gp  528 (721)
                      +.+||+++..|++++++.+..|++.+||.|++++|.||||+||++.+++|||++++++|+ +++|||.++ .++|||+||
T Consensus       378 ~~vEv~~~~~Ts~e~~~~a~~~~~~~Gk~pi~v~D~pGfi~nRil~~~~nEA~~ll~eGvas~~dID~a~~~g~G~P~GP  457 (503)
T TIGR02279       378 KRIAIAAAAVNPDSATRKAIYYLQQAGKKVLQIADYPGLLILRTVAMLANEAADAVLQGVASAQDIDTAMRLGVNYPYGP  457 (503)
T ss_pred             CeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCcCH
Confidence            578999999999999999999999999999999999999999999999999999999998 899999999 899999999


Q ss_pred             HHHHHhhchHHHHHHHHHHHHhCCC-CCCCcHHHHHHHHcCC
Q 004972          529 FQLLDLAGYGVAAATSKEFDKAFPD-RSFQSPLVDLLLKSGR  569 (721)
Q Consensus       529 f~~~D~~Gld~~~~~~~~l~~~~~~-~~~~~~~l~~~v~~G~  569 (721)
                      |+++|.+|+|+++++++++++.+++ ++.|+++|++|+..|.
T Consensus       458 ~~~~D~~Gld~~~~~l~~l~~~~~~~~~~p~~~L~~~v~~g~  499 (503)
T TIGR02279       458 LAWAAQLGWQRILRVLENLQHHYGEERYRPSSLLRRRALLGS  499 (503)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHHcCCCcCCcCHHHHHHHHcCC
Confidence            9999999999999999999999986 4458999999999875

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1

Probab=99.79  E-value=2e-19  Score=157.16  Aligned_cols=89  Identities=34%  Similarity=0.518  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCCC-CCCCHH
Q 004972          618 KEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNF-FKPSRF  696 (721)
Q Consensus       618 ~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~-~~p~~~  696 (721)
                      ++|+||++.+++|||++++++|++ |++|||.+++.|+|||.   |||+++|.+|++++.++++.+.+.+++. +.|+++
T Consensus         1 GFi~nRl~~~~~~ea~~l~~egva-s~~~ID~~~~~~~G~p~---Gpf~l~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~   76 (97)
T PF00725_consen    1 GFIVNRLLAALLNEAARLVEEGVA-SPEDIDRAMRYGLGFPM---GPFELADLVGLDVVYHILEYLAAALGDRAFRPSPL   76 (97)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHTTSS-SHHHHHHHHHHHHTHSS---THHHHHHHHHHHHHHHHHHHHHHHHCCGGGSS-HH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHhCCCCC---ccchHHHHhCchHHHHHHHHHHHhcCCCcCCchHH
Confidence            468999999999999999999998 99999999999999997   9999999999999999999999999985 889999


Q ss_pred             HHHHH-------HcCCCCcCC
Q 004972          697 LEERA-------TKGIPLSAP  710 (721)
Q Consensus       697 l~~~~-------~~g~~f~~~  710 (721)
                      +++|+       |+|+|||+|
T Consensus        77 l~~mv~~g~~G~k~g~Gfy~Y   97 (97)
T PF00725_consen   77 LKEMVEEGRLGRKSGKGFYDY   97 (97)
T ss_dssp             HHHHHHTT--BGGGTBSSSBE
T ss_pred             HHHHHHCCCCcCcCCCcceeC
Confidence            99999       789999998

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=99.75  E-value=2.2e-18  Score=164.03  Aligned_cols=92  Identities=29%  Similarity=0.430  Sum_probs=88.2

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCC--CCCC
Q 004972          616 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN--FFKP  693 (721)
Q Consensus       616 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~--~~~p  693 (721)
                      ++++|+||+|.++++||+++++.|.+ +-+|||.+|.+|.|||+   |||+++|.+|+|+..-+|+-|.+.+++  .|.|
T Consensus       198 tpGFIVNRlLiPyl~ea~r~yerGdA-skeDIDtaMklGagyPM---GPfEL~DyvGLDt~kfvmdgwhe~~pe~~~f~p  273 (298)
T KOG2304|consen  198 TPGFIVNRLLIPYLMEAIRMYERGDA-SKEDIDTAMKLGAGYPM---GPFELADYVGLDTCKFVMDGWHEGYPEDSLFAP  273 (298)
T ss_pred             CCchhhhHHHHHHHHHHHHHHHhcCC-cHhhHHHHHhccCCCCC---ChHHHHHHhhHHHHHHHHHHHHhcCCcccccCC
Confidence            68999999999999999999999999 99999999999999999   999999999999999999999999954  8999


Q ss_pred             CHHHHHHH-------HcCCCCcCCC
Q 004972          694 SRFLEERA-------TKGIPLSAPV  711 (721)
Q Consensus       694 ~~~l~~~~-------~~g~~f~~~~  711 (721)
                      +|+|.+++       |+|+|||+|+
T Consensus       274 sPll~klVaegklGrKtg~GfY~Yk  298 (298)
T KOG2304|consen  274 SPLLDKLVAEGKLGRKTGEGFYKYK  298 (298)
T ss_pred             ChHHHHHHhccccccccCccceecC
Confidence            99999999       7899999994

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=99.74  E-value=1.2e-17  Score=170.88  Aligned_cols=189  Identities=19%  Similarity=0.181  Sum_probs=139.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  385 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  385 (721)
                      +||++||+|.||.+||.+|.++||+|++||+++++.....          ...|            .....+..+.+++|
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~----------~~~G------------a~~a~s~~eaa~~a   58 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELL----------AAAG------------ATVAASPAEAAAEA   58 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHH----------HHcC------------CcccCCHHHHHHhC
Confidence            4899999999999999999999999999999999843221          1222            11122333778999


Q ss_pred             CEEEEcccCChHHHHHHHH--HHHhhCCCCeEEEecCCCCCHH--HHhcccCCCCcEEEecCCCCCCCCCe-------eE
Q 004972          386 DMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFSPAHVMPL-------LE  454 (721)
Q Consensus       386 DlVIeavpe~~~~k~~v~~--~l~~~~~~~~ii~s~ts~~~i~--~l~~~~~~~~r~ig~h~~~p~~~~~l-------vE  454 (721)
                      |+||.|||.+.++...++.  .+.+.+++++++++++|.-+.+  ++++.+.    -.|.+|.+.|-.+..       +.
T Consensus        59 DvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~----~~G~~~lDAPVsGg~~~A~~GtLt  134 (286)
T COG2084          59 DVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALA----AKGLEFLDAPVSGGVPGAAAGTLT  134 (286)
T ss_pred             CEEEEecCCHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHH----hcCCcEEecCccCCchhhhhCceE
Confidence            9999999988888777774  5888889999998755543332  3343332    226777765543322       44


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCc-----hhhhhhhhHH----HHHHHHHHHc-CCCHHHHHHHH-HhcC
Q 004972          455 IVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG-----FAVNRAFFPY----SQSARLLVSL-GVDVFRIDSAI-RSFG  523 (721)
Q Consensus       455 iv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~g-----fi~nRl~~~~----~~Ea~~l~~~-Gv~~~~ID~a~-~~~G  523 (721)
                      |+.|.  +++.+++++++++.+|++++++++. |     -++|+++...    +.||+.+.+. |++++.+..++ .+.+
T Consensus       135 imvGG--~~~~f~r~~pvl~~~g~~i~~~G~~-G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~~  211 (286)
T COG2084         135 IMVGG--DAEAFERAKPVLEAMGKNIVHVGPV-GAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGAA  211 (286)
T ss_pred             EEeCC--CHHHHHHHHHHHHHhcCceEEECCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcccc
Confidence            44442  8999999999999999999999876 4     4678876544    4599999988 99999999999 5443

>cd07014 S49_SppA Signal peptide peptidase A

Probab=99.73  E-value=1.2e-17  Score=162.75  Aligned_cols=141  Identities=19%  Similarity=0.156  Sum_probs=116.8

Q ss_pred             HHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEECCccc
Q 004972           31 PIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLAL  110 (721)
Q Consensus        31 ~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~  110 (721)
                      -.+.+|.++++++++|+++++|||++    ||.|+|+....             ...+.+ +.+.+++||+||++||.|.
T Consensus        22 ~~~~~l~~~l~~a~~d~~v~~vvl~~----~~~gg~~~~~~-------------~~~~~i-~~~~~~~kpVia~v~G~a~   83 (177)
T cd07014          22 VSGDTTAAQIRDARLDPKVKAIVLRV----NSPGGSVTASE-------------VIRAEL-AAARAAGKPVVASGGGNAA   83 (177)
T ss_pred             cCHHHHHHHHHHHhcCCCceEEEEEe----eCCCcCHHHHH-------------HHHHHH-HHHHhCCCCEEEEECCchh
Confidence            35689999999999999999999997    68898876531             122345 5577899999999999999


Q ss_pred             ccchHhhhhcCEEEeeCCceEeCcccccCcccc-----------ccccccccC--HHHHHHHHHcCCCcCHHHHHHcCCc
Q 004972          111 GGGLELAMGCHARIAAPKTQLGLPELTLGVIPG-----------TQRLPRLVG--LSKAIEMMLLSKSITSEEGWKLGLI  177 (721)
Q Consensus       111 GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~-----------~~~l~r~~G--~~~a~~l~ltg~~~~a~eA~~~Glv  177 (721)
                      |+|+.|+++||+++++++++|+++.+..+..+.           ...+++..|  .....+++..|..++|++|++.|||
T Consensus        84 g~g~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLV  163 (177)
T cd07014          84 SGGYWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLV  163 (177)
T ss_pred             HHHHHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCc
Confidence            999999999999999999999999877664332           124444545  8889999999999999999999999


Q ss_pred             cEEcCCchHHHH
Q 004972          178 DAVVTSEELLKV  189 (721)
Q Consensus       178 ~~vv~~~~l~~~  189 (721)
                      |++.+.+++.+.
T Consensus       164 D~v~~~~e~~~~  175 (177)
T cd07014         164 DSLGSFDDAVAK  175 (177)
T ss_pred             ccCCCHHHHHHH
Confidence            999988877653

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p

>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.70  E-value=6.3e-17  Score=158.74  Aligned_cols=147  Identities=24%  Similarity=0.285  Sum_probs=116.0

Q ss_pred             EEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHh
Q 004972           16 AIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE   95 (721)
Q Consensus        16 ~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~   95 (721)
                      ++|.++..    ++......+.+.++.+++++ ++.|+|.=.    |.|+++..                ...++ +.|.
T Consensus         2 ~vv~i~g~----I~~~~~~~l~~~l~~a~~~~-~~~vvl~In----SpGG~v~~----------------~~~i~-~~l~   55 (187)
T cd07020           2 YVLEINGA----ITPATADYLERAIDQAEEGG-ADALIIELD----TPGGLLDS----------------TREIV-QAIL   55 (187)
T ss_pred             EEEEEeeE----EChHHHHHHHHHHHHHHhCC-CCEEEEEEE----CCCCCHHH----------------HHHHH-HHHH
Confidence            55666543    66777889999999998665 787887521    33444332                12344 5577


Q ss_pred             hCCCcEEEEEC---CcccccchHhhhhcCEEEeeCCceEeCcccccCcccc-----------------ccccccccCH--
Q 004972           96 DCKKPIVAAVE---GLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG-----------------TQRLPRLVGL--  153 (721)
Q Consensus        96 ~~~~p~Iaav~---G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~-----------------~~~l~r~~G~--  153 (721)
                      .+||||||+|+   |+|.|||+.++++||+++++++++|++++...+..+.                 ...+++..|.  
T Consensus        56 ~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~  135 (187)
T cd07020          56 ASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRGRNA  135 (187)
T ss_pred             hCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence            89999999999   9999999999999999999999999999998554332                 2367888887  


Q ss_pred             HHHHHHHHcCCCcCHHHHHHcCCccEEcCCc-hHHH
Q 004972          154 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSE-ELLK  188 (721)
Q Consensus       154 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~-~l~~  188 (721)
                      .++.+++++|+.++|+||+++||||++++++ +++.
T Consensus       136 ~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~~~~~~  171 (187)
T cd07020         136 EWAEKAVRESLSLTAEEALKLGVIDLIAADLNELLK  171 (187)
T ss_pred             HHHHHHHHcCCeecHHHHHHcCCcccccCCHHHHHH
Confidence            6899999999999999999999999999876 5554

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=99.69  E-value=1.3e-16  Score=168.37  Aligned_cols=187  Identities=18%  Similarity=0.233  Sum_probs=135.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCCC
Q 004972          307 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD  386 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aD  386 (721)
                      ||+|||+|.||.+||..|++.|++|++||+++++++.+.           +.|.            ...++..+.+++||
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~-----------~~g~------------~~~~~~~~~~~~aD   57 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELL-----------AAGA------------VTAETARQVTEQAD   57 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HCCC------------cccCCHHHHHhcCC
Confidence            599999999999999999999999999999998876642           1221            11122226678999


Q ss_pred             EEEEcccCChHHHHHHHH--HHHhhCCCCeEEEecCCCCCHH---HHhcccCCCCcEEEecCCCCCCC-------CCeeE
Q 004972          387 MVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHV-------MPLLE  454 (721)
Q Consensus       387 lVIeavpe~~~~k~~v~~--~l~~~~~~~~ii~s~ts~~~i~---~l~~~~~~~~r~ig~h~~~p~~~-------~~lvE  454 (721)
                      +||+|+|++..++..++.  .+...++++++|++.+ +..+.   ++.+.+...    |+||.++|..       ...++
T Consensus        58 ivi~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd~s-t~~~~~~~~l~~~l~~~----g~~~~~~pv~g~~~~a~~g~l~  132 (291)
T TIGR01505        58 VIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMS-SISPIESKRFAKAVKEK----GIDYLDAPVSGGEIGAIEGTLS  132 (291)
T ss_pred             EEEEecCCHHHHHHHHcCcchHhhcCCCCCEEEECC-CCCHHHHHHHHHHHHHc----CCCEEecCCCCCHHHHhcCCEE
Confidence            999999987776666553  3566778888887544 44443   444444322    4555443322       12245


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCCeeEEEcC-CCc---hhhhhhhhHH----HHHHHHHHHc-CCCHHHHHHHH-HhcC
Q 004972          455 IVRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTG---FAVNRAFFPY----SQSARLLVSL-GVDVFRIDSAI-RSFG  523 (721)
Q Consensus       455 iv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d-~~g---fi~nRl~~~~----~~Ea~~l~~~-Gv~~~~ID~a~-~~~G  523 (721)
                      ++.+  .++++++.++++++.+|+.++++++ .+|   +++|+++.+.    ++|++.+++. |++++++..++ .+.+
T Consensus       133 i~~g--g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~  209 (291)
T TIGR01505       133 IMVG--GDQAVFDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLA  209 (291)
T ss_pred             EEec--CCHHHHHHHHHHHHHhcCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcc
Confidence            5555  3689999999999999999999975 455   5889887765    7899999987 99999999999 4444

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.69  E-value=6.3e-17  Score=170.43  Aligned_cols=94  Identities=28%  Similarity=0.378  Sum_probs=89.6

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCCCCCCCH
Q 004972          616 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSR  695 (721)
Q Consensus       616 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~  695 (721)
                      .++++.||++++++|||++|+++|++ +++|||.++++|+|||+   |||+++|.+|++.++++++.+.+.++++|.|++
T Consensus       183 ~~Gf~~nRl~~~~~~ea~~~~~~gv~-~~~~iD~~~~~g~g~p~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~  258 (288)
T PRK09260        183 FPGFVTSRISALVGNEAFYMLQEGVA-TAEDIDKAIRLGLNFPM---GPLELGDLVGLDTRLNNLKYLHETLGEKYRPAP  258 (288)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhhHHHHHHHHHHHHHHhCCCCCCCH
Confidence            47899999999999999999999997 99999999999999998   999999999999999999999999999999999


Q ss_pred             HHHHHH-------HcCCCCcCCCCC
Q 004972          696 FLEERA-------TKGIPLSAPVSS  713 (721)
Q Consensus       696 ~l~~~~-------~~g~~f~~~~~~  713 (721)
                      +|.+|+       |+|+|||+|++.
T Consensus       259 ~l~~~~~~g~~G~k~g~Gfy~y~~~  283 (288)
T PRK09260        259 LLEKYVKAGRLGRKTGRGVYDYTNR  283 (288)
T ss_pred             HHHHHHHCCCCccccCCEEEECCCC
Confidence            999999       789999999664

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=99.69  E-value=6.7e-16  Score=163.48  Aligned_cols=189  Identities=17%  Similarity=0.211  Sum_probs=137.3

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  383 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  383 (721)
                      ++||+|||+|.||.++|..+++.|++|++||++++..+...           +.+             +..++++ +.++
T Consensus         2 ~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~-----------~~g-------------~~~~~~~~e~~~   57 (296)
T PRK11559          2 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVI-----------AAG-------------AETASTAKAVAE   57 (296)
T ss_pred             CceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HCC-------------CeecCCHHHHHh
Confidence            35899999999999999999999999999999998866532           111             2233444 4568


Q ss_pred             CCCEEEEcccCChHHHHHHH--HHHHhhCCCCeEEEecCCCCCHH--HHhcccCCCCcEEEecCCCCCCCC-------Ce
Q 004972          384 DVDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFSPAHVM-------PL  452 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~--~~l~~~~~~~~ii~s~ts~~~i~--~l~~~~~~~~r~ig~h~~~p~~~~-------~l  452 (721)
                      +||+||+|+|++..++..++  ..+.+.++++++|++.++..+..  ++.+.+...    |.||.++|..+       ..
T Consensus        58 ~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~----g~~~~d~pv~g~~~~a~~g~  133 (296)
T PRK11559         58 QCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAK----GIEMLDAPVSGGEPKAIDGT  133 (296)
T ss_pred             cCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHc----CCcEEEcCCCCCHHHHhhCc
Confidence            99999999998777665554  34677788899887544433322  444444322    56776655332       23


Q ss_pred             eEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC-CCchh---hhhhhhH----HHHHHHHHHHc-CCCHHHHHHHH-Hhc
Q 004972          453 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTGFA---VNRAFFP----YSQSARLLVSL-GVDVFRIDSAI-RSF  522 (721)
Q Consensus       453 vEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d-~~gfi---~nRl~~~----~~~Ea~~l~~~-Gv~~~~ID~a~-~~~  522 (721)
                      ++++.+.  +++.++.+.++++.+|+.++++++ .+|++   +|+++.+    .++|++.++++ |+++++++.++ .++
T Consensus       134 l~i~~gg--~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~  211 (296)
T PRK11559        134 LSVMVGG--DKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGL  211 (296)
T ss_pred             EEEEECC--CHHHHHHHHHHHHHhcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCc
Confidence            5566553  689999999999999999999975 45664   6776555    47899999987 89999999998 444


Q ss_pred             C
Q 004972          523 G  523 (721)
Q Consensus       523 G  523 (721)
                      +
T Consensus       212 ~  212 (296)
T PRK11559        212 A  212 (296)
T ss_pred             c
Confidence            3

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.67  E-value=1.5e-16  Score=166.63  Aligned_cols=91  Identities=24%  Similarity=0.376  Sum_probs=87.1

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCC-CCCCC
Q 004972          616 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPS  694 (721)
Q Consensus       616 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~  694 (721)
                      +++++.||++.+++|||++|+++|++ +++|||.++++|+|||+   |||+++|.+|++.++++++.+++.+++ +|.|+
T Consensus       188 ~pGfi~nRi~~~~~~Ea~~ll~eGv~-~~~dID~~~~~g~G~p~---Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~~~p~  263 (286)
T PRK07819        188 RSGFVVNALLVPYLLSAIRMVESGFA-TAEDIDKAMVLGCAHPM---GPLRLSDLVGLDTVKAIADSMYEEFKEPLYAPP  263 (286)
T ss_pred             CCChHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhccHHHHHHHHHHHHHcCCCCCCCC
Confidence            47899999999999999999999997 89999999999999998   999999999999999999999999886 88999


Q ss_pred             HHHHHHH-------HcCCCCcCC
Q 004972          695 RFLEERA-------TKGIPLSAP  710 (721)
Q Consensus       695 ~~l~~~~-------~~g~~f~~~  710 (721)
                      ++|++|+       |+|+|||+|
T Consensus       264 ~~l~~~v~~g~~G~k~g~GfY~y  286 (286)
T PRK07819        264 PLLLRMVEAGLLGKKSGRGFYTY  286 (286)
T ss_pred             HHHHHHHHCCCCcccCCCEeccC
Confidence            9999999       689999998

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.67  E-value=1.8e-16  Score=166.50  Aligned_cols=92  Identities=26%  Similarity=0.435  Sum_probs=87.6

Q ss_pred             cChHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCC-CCCC
Q 004972          615 VTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKP  693 (721)
Q Consensus       615 ~~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p  693 (721)
                      -++++|.||++++++|||++|+++|++ +|+|||.++++|+|||+   |||+++|.+|++.+.++++.+.+.+++ +|+|
T Consensus       183 d~~g~i~~Ri~~~~~~ea~~~~~~gv~-~~~diD~~~~~g~g~p~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~  258 (282)
T PRK05808        183 NAPGFVVNRILIPMINEAIFVLAEGVA-TAEDIDEGMKLGCNHPI---GPLALADLIGLDTCLAIMEVLYEGFGDSKYRP  258 (282)
T ss_pred             CccChHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhhhHHHHHHHHHHHHHcCCCcCCC
Confidence            467999999999999999999999998 89999999999999998   999999999999999999999999986 8899


Q ss_pred             CHHHHHHH-------HcCCCCcCC
Q 004972          694 SRFLEERA-------TKGIPLSAP  710 (721)
Q Consensus       694 ~~~l~~~~-------~~g~~f~~~  710 (721)
                      +++|++|+       |+|+|||+|
T Consensus       259 ~~~l~~~~~~g~~G~k~g~Gfy~y  282 (282)
T PRK05808        259 CPLLRKMVAAGWLGRKTGRGFYDY  282 (282)
T ss_pred             CHHHHHHHHCCCCccccCCcccCC
Confidence            99999999       679999998

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=99.65  E-value=7.2e-15  Score=153.96  Aligned_cols=154  Identities=20%  Similarity=0.217  Sum_probs=119.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCCC
Q 004972          307 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD  386 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aD  386 (721)
                      ||+|||+|.||+++|..|.++|++|++||++++.++.+.+           .|.++           ..+++.+.+++||
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~-----------~g~~~-----------~~~~~~~~~~~aD   59 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIE-----------RGLVD-----------EASTDLSLLKDCD   59 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------CCCcc-----------cccCCHhHhcCCC
Confidence            7999999999999999999999999999999988776532           22111           1233445678999


Q ss_pred             EEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCC------------CCCeeE
Q 004972          387 MVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAH------------VMPLLE  454 (721)
Q Consensus       387 lVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~------------~~~lvE  454 (721)
                      +||+|+|  .....++++++.+.++++++|++ +++.....+........+|++.||+.++.            .++.+-
T Consensus        60 lVilavp--~~~~~~~~~~l~~~l~~~~ii~d-~~Svk~~~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~  136 (279)
T PRK07417         60 LVILALP--IGLLLPPSEQLIPALPPEAIVTD-VGSVKAPIVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWV  136 (279)
T ss_pred             EEEEcCC--HHHHHHHHHHHHHhCCCCcEEEe-CcchHHHHHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEE
Confidence            9999999  56666788999999988888755 54555555554444455799999975442            344566


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004972          455 IVRTERTSAQVILDLMTVGKIIKKVPVVVGN  485 (721)
Q Consensus       455 iv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d  485 (721)
                      +++++.++++.++.+.++++.+|+.++++++
T Consensus       137 l~p~~~~~~~~~~~v~~l~~~lG~~~v~~~~  167 (279)
T PRK07417        137 LTPTENTDLNALAIVEELAVSLGSKIYTADP  167 (279)
T ss_pred             EccCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence            8889999999999999999999999998853

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=99.64  E-value=3.7e-16  Score=161.59  Aligned_cols=94  Identities=24%  Similarity=0.412  Sum_probs=88.5

Q ss_pred             cChHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhC--CCCC
Q 004972          615 VTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYG--NFFK  692 (721)
Q Consensus       615 ~~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~--~~~~  692 (721)
                      -++++|.||++.++++||++++.+|++ ++++||.+|.+|+|||+   |||+++|.+|+|..++.++.+.+.++  +.+.
T Consensus       183 D~pGFi~NRil~~~~~eA~~l~~eGva-~~e~ID~~~~~~~G~pm---Gpf~l~D~~GlD~~~~i~~~~~~~~~~~~~~~  258 (307)
T COG1250         183 DVPGFIVNRLLAALLNEAIRLLEEGVA-TPEEIDAAMRQGLGLPM---GPFELADLIGLDVMLHIMKVLNETLGDDPYYR  258 (307)
T ss_pred             CCCceehHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhccCCCc---cHHHHHHHHhHHHHHHHHHHHHHhcCCCcccc
Confidence            468999999999999999999999999 99999999999999998   99999999999999999999998888  3788


Q ss_pred             CCHHHHHHH-------HcCCCCcCCCC
Q 004972          693 PSRFLEERA-------TKGIPLSAPVS  712 (721)
Q Consensus       693 p~~~l~~~~-------~~g~~f~~~~~  712 (721)
                      |++++++|+       |+|+|||+|++
T Consensus       259 ~~~~~~~~v~~g~lG~Ksg~GfY~y~~  285 (307)
T COG1250         259 PPPLLRKLVEAGRLGRKSGKGFYDYRG  285 (307)
T ss_pred             ccHHHHHHHhcccccccCCCcceeccc
Confidence            999999999       78999999975

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=99.63  E-value=8.9e-16  Score=162.34  Aligned_cols=94  Identities=24%  Similarity=0.370  Sum_probs=88.2

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCC-CCCCC
Q 004972          616 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPS  694 (721)
Q Consensus       616 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~  694 (721)
                      +++++.||++.+++|||++|+++|++ +++|||.++++|+|||+   |||+++|.+|++.++++++.+++.+++ +|.|+
T Consensus       185 ~~g~i~nri~~~~~~ea~~~~~~gv~-~~~~iD~~~~~g~g~~~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~  260 (295)
T PLN02545        185 YPGFIVNRILMPMINEAFYALYTGVA-SKEDIDTGMKLGTNHPM---GPLHLADFIGLDTCLSIMKVLHEGLGDSKYRPC  260 (295)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhccCCCC---CHHHHHHHhchHHHHHHHHHHHHHcCCCcCCCC
Confidence            46899999999999999999999998 89999999999999998   999999999999999999999999886 89999


Q ss_pred             HHHHHHH-------HcCCCCcCCCCC
Q 004972          695 RFLEERA-------TKGIPLSAPVSS  713 (721)
Q Consensus       695 ~~l~~~~-------~~g~~f~~~~~~  713 (721)
                      ++|++|+       |+|+|||+|.+.
T Consensus       261 ~~l~~~~~~g~~G~k~g~Gfy~y~~~  286 (295)
T PLN02545        261 PLLVQYVDAGRLGRKSGRGVYHYDGK  286 (295)
T ss_pred             HHHHHHHHCCCCcccCCCeeeECCCC
Confidence            9999999       678999999553

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.61  E-value=2.1e-15  Score=158.78  Aligned_cols=92  Identities=17%  Similarity=0.284  Sum_probs=86.1

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCCCC--CC
Q 004972          616 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFF--KP  693 (721)
Q Consensus       616 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~--~p  693 (721)
                      .++++.||++.+++|||++++++|++ +++|||.++..|+|||.   |||+++|.+|+|.++.+++.+.+.+++.+  .|
T Consensus       187 ~pgfi~nRi~~~~~~ea~~l~~~g~a-~~~~iD~a~~~~~g~~~---Gp~~~~D~~Gld~~~~~~~~~~~~~~~~~~~~~  262 (287)
T PRK08293        187 QPGYILNSLLVPFLSAALALWAKGVA-DPETIDKTWMIATGAPM---GPFGILDIVGLDTAYNITSNWAEATDDENAKKA  262 (287)
T ss_pred             CCCHhHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhccCCCc---CHHHHHHHhchHHHHHHHHHHHHHhCCcccccc
Confidence            57899999999999999999999999 99999999999999998   99999999999999999999999888743  48


Q ss_pred             CHHHHHHH-------HcCCCCcCCC
Q 004972          694 SRFLEERA-------TKGIPLSAPV  711 (721)
Q Consensus       694 ~~~l~~~~-------~~g~~f~~~~  711 (721)
                      +++|++|+       |+|+|||+|+
T Consensus       263 ~~~l~~~v~~g~~G~k~g~Gfy~y~  287 (287)
T PRK08293        263 AALLKEYIDKGKLGVATGEGFYNYP  287 (287)
T ss_pred             hHHHHHHHHCCCCcccCCCccccCc
Confidence            89999999       7899999993

>PLN02688 pyrroline-5-carboxylate reductase

Probab=99.60  E-value=3.7e-14  Score=147.86  Aligned_cols=184  Identities=19%  Similarity=0.137  Sum_probs=138.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC----ceEEE-eCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI----YVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  379 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~----~V~l~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-  379 (721)
                      +||+|||+|.||.+|+..|.++|+    +|++| |+++++.+.+.           +.|             +...++. 
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~-----------~~g-------------~~~~~~~~   56 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQ-----------SLG-------------VKTAASNT   56 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHH-----------HcC-------------CEEeCChH
Confidence            479999999999999999999998    89999 99988765431           112             2333444 


Q ss_pred             cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEe-cC
Q 004972          380 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RT  458 (721)
Q Consensus       380 ~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv-~~  458 (721)
                      +.+++||+||+|++  ++...+++.++.+.++++++|+|.++++++.++....... ++++.+|..|......+.++ .+
T Consensus        57 e~~~~aDvVil~v~--~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~~~~~~-~vvr~mP~~~~~~~~~~~~l~~~  133 (266)
T PLN02688         57 EVVKSSDVIILAVK--PQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQEWAGGR-RVVRVMPNTPCLVGEAASVMSLG  133 (266)
T ss_pred             HHHhcCCEEEEEEC--cHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHHHcCCC-CEEEECCCcHHHHhCceEEEEeC
Confidence            55789999999996  6778888888888888888888888999999888776544 78889998888777666644 57


Q ss_pred             CCCCHHHHHHHHHHHHHcCCeeEEEcCC--------CchhhhhhhhHHHHHHHH--HHHcCCCHHHHHHHH
Q 004972          459 ERTSAQVILDLMTVGKIIKKVPVVVGNC--------TGFAVNRAFFPYSQSARL--LVSLGVDVFRIDSAI  519 (721)
Q Consensus       459 ~~t~~e~~~~~~~l~~~lG~~~v~v~d~--------~gfi~nRl~~~~~~Ea~~--l~~~Gv~~~~ID~a~  519 (721)
                      ..++++..+.++++++.+|. ++++.+.        .| -...+++ ++.|++.  ....|+++++.-+++
T Consensus       134 ~~~~~~~~~~v~~l~~~~G~-~~~~~e~~~d~~~~~~g-~g~a~~~-~~~~a~~ea~~~~Gl~~~~a~~~~  201 (266)
T PLN02688        134 PAATADDRDLVATLFGAVGK-IWVVDEKLLDAVTGLSG-SGPAYIF-LAIEALADGGVAAGLPRDVALSLA  201 (266)
T ss_pred             CCCCHHHHHHHHHHHHhCCC-EEEeCHHHcchhHhhhc-CHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHH
Confidence            77899999999999999999 7776441        11 1112222 2223222  334599999988887

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.60  E-value=2.5e-15  Score=158.63  Aligned_cols=94  Identities=23%  Similarity=0.323  Sum_probs=88.4

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCC-CCCCC
Q 004972          616 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPS  694 (721)
Q Consensus       616 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~  694 (721)
                      .++++.||++.+++|||+.++++|++ ++++||.++++|+|||.   |||+++|.+|++.+.++++.+.+.+++ +|+|+
T Consensus       185 ~pg~i~nRl~~~~~~ea~~~~~~g~~-~~~~iD~~~~~g~g~~~---GP~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~p~  260 (292)
T PRK07530        185 FPAFIVNRILLPMINEAIYTLYEGVG-SVEAIDTAMKLGANHPM---GPLELADFIGLDTCLSIMQVLHDGLADSKYRPC  260 (292)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhhhHHHHHHHHHHHHHcCCCcCCCC
Confidence            35899999999999999999999998 99999999999999997   999999999999999999999998876 89999


Q ss_pred             HHHHHHH-------HcCCCCcCCCCC
Q 004972          695 RFLEERA-------TKGIPLSAPVSS  713 (721)
Q Consensus       695 ~~l~~~~-------~~g~~f~~~~~~  713 (721)
                      ++|++|+       |+|+|||+|++.
T Consensus       261 ~~l~~~v~~g~~G~k~g~Gfy~y~~~  286 (292)
T PRK07530        261 PLLVKYVEAGWLGRKTGRGFYDYRGE  286 (292)
T ss_pred             HHHHHHHHCCCCccccCCEeeeCCCC
Confidence            9999999       899999999544

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=99.58  E-value=3.2e-15  Score=157.72  Aligned_cols=91  Identities=22%  Similarity=0.240  Sum_probs=86.8

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCC-CCCCC
Q 004972          616 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPS  694 (721)
Q Consensus       616 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~  694 (721)
                      .++++.||++.+++|||++++++|++ |++|||.+++.++|||.   |||+++|.+|+|.+.++++.+.+.+++ +|.|+
T Consensus       187 ~pgfv~nRl~~~~~~ea~~~~~~g~a-~~~~iD~~~~~~~g~~~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~  262 (291)
T PRK06035        187 VPGFFTTRFIEGWLLEAIRSFEIGIA-TIKDIDEMCKLAFGFPM---GPFELMDIIGIDTVYHIAEYLYEETGDPQFIPP  262 (291)
T ss_pred             CCCeeHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHhhcCCCcc---CHHHHHHHhhHHHHHHHHHHHHHHcCCCcCCcc
Confidence            57899999999999999999999999 99999999999999998   999999999999999999999999886 78999


Q ss_pred             HHHHHHH-------Hc-----CCCCcCC
Q 004972          695 RFLEERA-------TK-----GIPLSAP  710 (721)
Q Consensus       695 ~~l~~~~-------~~-----g~~f~~~  710 (721)
                      ++|++|+       |+     |+|||+|
T Consensus       263 ~~l~~~v~~g~~G~k~~~~~~g~Gfy~y  290 (291)
T PRK06035        263 NSLKQMVLNGYVGDKKVKYGSKGGWFDY  290 (291)
T ss_pred             HHHHHHHHCCCCcCCCCCCCCCceeeec
Confidence            9999999       67     8999998

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=99.58  E-value=5.4e-14  Score=152.82  Aligned_cols=171  Identities=19%  Similarity=0.207  Sum_probs=124.7

Q ss_pred             CceeEEEEc-CCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcccc
Q 004972          304 GVRKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  382 (721)
Q Consensus       304 ~~~kI~VIG-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l  382 (721)
                      .+++|+||| +|.||+++|..|.++|++|++||+++..  .                   .               .+.+
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~~--~-------------------~---------------~~~~  140 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDWD--R-------------------A---------------EDIL  140 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcch--h-------------------H---------------HHHH
Confidence            568999999 9999999999999999999999986310  0                   0               0235


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccCCCCcEEEecCCCCCCCCCeeE--EecC
Q 004972          383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE--IVRT  458 (721)
Q Consensus       383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvE--iv~~  458 (721)
                      ++||+||+|+|  ......+++++.+ +++++||++++|.  .++..+.....  .+|+|.||+.++....+..  ++..
T Consensus       141 ~~aDlVilavP--~~~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~--~~fvg~HPm~G~~~~~~~~~~vv~~  215 (374)
T PRK11199        141 ADAGMVIVSVP--IHLTEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS--GPVLGLHPMFGPDVGSLAKQVVVVC  215 (374)
T ss_pred             hcCCEEEEeCc--HHHHHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC--CCEEeeCCCCCCCCcccCCCEEEEc
Confidence            78999999999  4456788899988 8999999998885  34556655443  3699999998886654433  5556


Q ss_pred             CCCCHHHHHHHHHHHHHcCCeeEEEcC-CCchhhhhh--hhHH--HHHHHHHHHcCCCHHHH
Q 004972          459 ERTSAQVILDLMTVGKIIKKVPVVVGN-CTGFAVNRA--FFPY--SQSARLLVSLGVDVFRI  515 (721)
Q Consensus       459 ~~t~~e~~~~~~~l~~~lG~~~v~v~d-~~gfi~nRl--~~~~--~~Ea~~l~~~Gv~~~~I  515 (721)
                      +.++++.++.+.++++.+|..++.++. ....++-.+  +-.+  +.++..+.+.|.+++++
T Consensus       216 ~~~~~~~~~~~~~l~~~lG~~v~~~~~~~HD~~~a~vshLpH~~a~al~~~l~~~~~~~~~~  277 (374)
T PRK11199        216 DGRQPEAYQWLLEQIQVWGARLHRISAVEHDQNMAFIQALRHFATFAYGLHLAKENVDLEQL  277 (374)
T ss_pred             CCCCchHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence            678889999999999999999999853 233222222  1122  23455555566666554

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.57  E-value=5.8e-15  Score=156.25  Aligned_cols=95  Identities=23%  Similarity=0.295  Sum_probs=90.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCC-CCCCCH
Q 004972          617 EKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPSR  695 (721)
Q Consensus       617 ~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~~  695 (721)
                      ++++.||++.++++||+.|+++|++ ++++||.++..|+|||++..|||+++|.+|++.+++.++.+.+.+++ +|.|++
T Consensus       182 ~Gfi~nri~~~~l~EAl~l~e~g~~-~~e~iD~a~~~g~G~~~~~~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~~~p~~  260 (314)
T PRK08269        182 PGYIVPRIQALAMNEAARMVEEGVA-SAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCDILYYASRYLAGEIGPDRFAPPA  260 (314)
T ss_pred             CCcchHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCccCcCHHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCCH
Confidence            4789999999999999999999998 99999999999999999999999999999999999999999998887 999999


Q ss_pred             HHHHHH-------HcCCCCcCCCC
Q 004972          696 FLEERA-------TKGIPLSAPVS  712 (721)
Q Consensus       696 ~l~~~~-------~~g~~f~~~~~  712 (721)
                      +|++|+       |+|+|||+|++
T Consensus       261 ~l~~~v~~g~~G~ksG~GfY~y~~  284 (314)
T PRK08269        261 IVVRNMEEGRDGLRTGAGFYDYAG  284 (314)
T ss_pred             HHHHHHHCCCCcccCCCcceeCCC
Confidence            999999       78999999954

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=99.54  E-value=1.1e-13  Score=146.08  Aligned_cols=186  Identities=15%  Similarity=0.118  Sum_probs=124.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      +||+|||+|.||.+||..|+++|++|++||+++++++...+           .|             +..+++. +.+++
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~-----------~g-------------~~~~~s~~~~~~~   57 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVD-----------KG-------------ATPAASPAQAAAG   57 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------cC-------------CcccCCHHHHHhc
Confidence            58999999999999999999999999999999998765421           12             1223333 56789


Q ss_pred             CCEEEEcccCChHHHHHHHH--HHHhhCCCCeEEEecCCCCCHH---HHhcccC-CCCcEEEecCCCCC---CCCCeeEE
Q 004972          385 VDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN---IVGEKTS-SQDRIIGAHFFSPA---HVMPLLEI  455 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~--~l~~~~~~~~ii~s~ts~~~i~---~l~~~~~-~~~r~ig~h~~~p~---~~~~lvEi  455 (721)
                      ||+||+|+|++..+...+..  .+.+.+++++++++. |+..+.   ++.+.+. ..-+|+.......+   ..+.++-+
T Consensus        58 aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvid~-sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~  136 (296)
T PRK15461         58 AEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVIDM-STIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLL  136 (296)
T ss_pred             CCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEEEEC-CCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEE
Confidence            99999999977655544432  356667788887654 444443   3433332 22233322221111   12222223


Q ss_pred             ecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCC-c---hhhhhhh----hHHHHHHHHHHHc-CCCHHHHHHHH
Q 004972          456 VRTERTSAQVILDLMTVGKIIKKVPVVVGNCT-G---FAVNRAF----FPYSQSARLLVSL-GVDVFRIDSAI  519 (721)
Q Consensus       456 v~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~-g---fi~nRl~----~~~~~Ea~~l~~~-Gv~~~~ID~a~  519 (721)
                      +.+   +++++++++++++.+|+.++++++.. |   .++|.++    ...+.|++.+++. |++++.+-.++
T Consensus       137 ~gg---~~~~~~~~~p~l~~~g~~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l  206 (296)
T PRK15461        137 AGG---TAEQVERATPILMAMGNELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVM  206 (296)
T ss_pred             ECC---CHHHHHHHHHHHHHHcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            333   78999999999999999999998731 1   3445443    3345799999887 99999987777

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.53  E-value=3.6e-13  Score=140.44  Aligned_cols=188  Identities=17%  Similarity=0.170  Sum_probs=137.0

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCC---CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-c
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNN---IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  380 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G---~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  380 (721)
                      |+||+|||+|.||++++..+.++|   ++|.+||++++..+...+.+          +             +..+++. +
T Consensus         2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~----------g-------------~~~~~~~~~   58 (267)
T PRK11880          2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEY----------G-------------VRAATDNQE   58 (267)
T ss_pred             CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhc----------C-------------CeecCChHH
Confidence            468999999999999999999999   78999999998866542210          1             2223343 4


Q ss_pred             ccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeE-EecCC
Q 004972          381 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVRTE  459 (721)
Q Consensus       381 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvE-iv~~~  459 (721)
                      .+.+||+||+|+|  .....++++++.+.+  +++|+|.+++++...+...++...+++..||..|......+. ++++.
T Consensus        59 ~~~~advVil~v~--~~~~~~v~~~l~~~~--~~~vvs~~~gi~~~~l~~~~~~~~~iv~~~P~~p~~~~~~~~~i~~~~  134 (267)
T PRK11880         59 AAQEADVVVLAVK--PQVMEEVLSELKGQL--DKLVVSIAAGVTLARLERLLGADLPVVRAMPNTPALVGAGMTALTANA  134 (267)
T ss_pred             HHhcCCEEEEEcC--HHHHHHHHHHHHhhc--CCEEEEecCCCCHHHHHHhcCCCCcEEEecCCchHHHcCceEEEecCC
Confidence            5688999999998  777888888888776  467778888999988888776667899999998887776666 45777


Q ss_pred             CCCHHHHHHHHHHHHHcCCeeEEEcCC--Cchh-hh----hhhhHHHHHHHHHH-HcCCCHHHHHHHH
Q 004972          460 RTSAQVILDLMTVGKIIKKVPVVVGNC--TGFA-VN----RAFFPYSQSARLLV-SLGVDVFRIDSAI  519 (721)
Q Consensus       460 ~t~~e~~~~~~~l~~~lG~~~v~v~d~--~gfi-~n----Rl~~~~~~Ea~~l~-~~Gv~~~~ID~a~  519 (721)
                      .++++..+.++.+++.+|..+++..+.  .... ..    -+++.++....... +.|+++++..+++
T Consensus       135 ~~~~~~~~~v~~l~~~lG~~~~~~~e~~~d~~~a~~~~~pa~~~~~~~~~~~~~~~~Gl~~~~a~~~~  202 (267)
T PRK11880        135 LVSAEDRELVENLLSAFGKVVWVDDEKQMDAVTAVSGSGPAYVFLFIEALADAGVKLGLPREQARKLA  202 (267)
T ss_pred             CCCHHHHHHHHHHHHhCCeEEEECChHhcchHHHHhcChHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            789999999999999999755443221  1111 11    12223333333433 4599998877776

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.53  E-value=2.2e-13  Score=142.76  Aligned_cols=188  Identities=13%  Similarity=0.120  Sum_probs=136.0

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCC----CceEEEeCCHH-HHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNN----IYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  379 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G----~~V~l~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  379 (721)
                      .+||+|||+|.||.+|+..|.++|    ++|+++|++++ .++....           .           . .+..+++.
T Consensus         3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~-----------~-----------~-g~~~~~~~   59 (279)
T PRK07679          3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQ-----------K-----------Y-GVKGTHNK   59 (279)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHH-----------h-----------c-CceEeCCH
Confidence            468999999999999999999998    78999999764 4343211           0           0 12333444


Q ss_pred             -cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEe-c
Q 004972          380 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-R  457 (721)
Q Consensus       380 -~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv-~  457 (721)
                       +.+++||+||.|||  ++...+++.++.+.++++++|+|..++++++.+.+......++++.||+.|......+.++ +
T Consensus        60 ~e~~~~aDvVilav~--p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~t~~~~  137 (279)
T PRK07679         60 KELLTDANILFLAMK--PKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILKSATAISP  137 (279)
T ss_pred             HHHHhcCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHhcccEEEee
Confidence             55789999999999  7777788888988888888999988899999888877655679999998776665555555 6


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCeeEEEcCCCch--hh-----hhhhhHHHHHHHH--HHHcCCCHHHHHHHH
Q 004972          458 TERTSAQVILDLMTVGKIIKKVPVVVGNCTGF--AV-----NRAFFPYSQSARL--LVSLGVDVFRIDSAI  519 (721)
Q Consensus       458 ~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~gf--i~-----nRl~~~~~~Ea~~--l~~~Gv~~~~ID~a~  519 (721)
                      ++..+++..+.++++++.+|+..+ +.+.--.  ..     ... ..++.|++.  ....|+++++.-+++
T Consensus       138 ~~~~~~~~~~~v~~l~~~~G~~~~-v~e~~~~~~~a~~Gsgpa~-~~~~~eal~e~~~~~Gl~~~~a~~~~  206 (279)
T PRK07679        138 SKHATAEHIQTAKALFETIGLVSV-VEEEDMHAVTALSGSGPAY-IYYVVEAMEKAAKKIGLKEDVAKSLI  206 (279)
T ss_pred             CCCCCHHHHHHHHHHHHhCCcEEE-eCHHHhhhHHHhhcCHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            777889999999999999998554 3321100  00     111 233344443  345599999888887

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.53  E-value=4.8e-13  Score=139.01  Aligned_cols=182  Identities=15%  Similarity=0.172  Sum_probs=141.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC----ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-c
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  380 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  380 (721)
                      +||+|||+|+||.+|+..|.++|+    +|+++|+++++++.+.+.          .|             +..+++. +
T Consensus         3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~----------~g-------------~~~~~~~~e   59 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDK----------YG-------------ITITTNNNE   59 (272)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHh----------cC-------------cEEeCCcHH
Confidence            379999999999999999999885    699999999886654210          11             2233344 5


Q ss_pred             ccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEe-cCC
Q 004972          381 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RTE  459 (721)
Q Consensus       381 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv-~~~  459 (721)
                      .+++||+||.||+  ++...++++++.+.++++++|+|...++++.++.+.++.+.+++...|+.|...+..+..+ +++
T Consensus        60 ~~~~aDiIiLavk--P~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~t~~~~~~  137 (272)
T PRK12491         60 VANSADILILSIK--PDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCFNE  137 (272)
T ss_pred             HHhhCCEEEEEeC--hHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcCceEEEEeCC
Confidence            5789999999999  6888899999998888889999999999999999988766789999999999988888876 567


Q ss_pred             CCCHHHHHHHHHHHHHcCCeeEEEcC------------CCchhhhhhhhHHHHHHH--HHHHcCCCHHHHHHHH
Q 004972          460 RTSAQVILDLMTVGKIIKKVPVVVGN------------CTGFAVNRAFFPYSQSAR--LLVSLGVDVFRIDSAI  519 (721)
Q Consensus       460 ~t~~e~~~~~~~l~~~lG~~~v~v~d------------~~gfi~nRl~~~~~~Ea~--~l~~~Gv~~~~ID~a~  519 (721)
                      ..+++..+.+..+++.+|... ++.|            .|+|+      .++.|++  ..++.|++.++-....
T Consensus       138 ~~~~~~~~~v~~lf~~~G~~~-~~~E~~~d~~talsgsgPAf~------~~~~eal~~a~v~~Gl~~~~A~~l~  204 (272)
T PRK12491        138 MVTEKDIKEVLNIFNIFGQTE-VVNEKLMDVVTSISGSSPAYV------YMFIEAMADAAVLGGMPRKQAYKFA  204 (272)
T ss_pred             CCCHHHHHHHHHHHHcCCCEE-EEcHHHhhhHHHhccCcHHHH------HHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            788999999999999999974 4433            22222      2233433  2334577777766665

>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.52  E-value=7.4e-14  Score=139.75  Aligned_cols=156  Identities=18%  Similarity=0.180  Sum_probs=113.0

Q ss_pred             cEEEEEeCCC--C-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHH
Q 004972           14 GVAIITLINP--P-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV   90 (721)
Q Consensus        14 ~v~~i~l~~p--~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~   90 (721)
                      +|++|.++.+  + .+..+.-.+.+|.++++.+..|+++++|||+    .||+|+|+..+..             ..+.+
T Consensus         1 ~i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~----~~s~Gg~~~~~~~-------------~~~~l   63 (211)
T cd07019           1 SIGVVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLR----VNSPGGSVTASEV-------------IRAEL   63 (211)
T ss_pred             CEEEEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEE----EcCCCcCHHHHHH-------------HHHHH
Confidence            4777777665  2 2433455689999999999999999999998    6999999987532             12334


Q ss_pred             HHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCccc------------ccCcccccccc-----------
Q 004972           91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPEL------------TLGVIPGTQRL-----------  147 (721)
Q Consensus        91 ~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~------------~~Gl~P~~~~l-----------  147 (721)
                       +.+..++||+||+++|.|.|+|+.|+++||++++++++.|+.-.+            ++|+-+...+.           
T Consensus        64 -~~~~~~~kpVia~v~g~a~s~gy~la~~aD~i~a~~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~~~~  142 (211)
T cd07019          64 -AAARAAGKPVVVSAGGAAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRA  142 (211)
T ss_pred             -HHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEcCCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCCCCC
Confidence             457789999999999999999999999999999999999874321            22321110000           


Q ss_pred             --------------------------ccccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHH
Q 004972          148 --------------------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK  188 (721)
Q Consensus       148 --------------------------~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~  188 (721)
                                                .|.+.+. ..+-+..|..+++++|++.||||++...++...
T Consensus       143 ~s~e~r~~~~~~ld~~~~~f~~~Va~~R~~~~~-~l~~~~~~~~~~~~~A~~~GLvD~i~~~~~~~~  208 (211)
T cd07019         143 LPPEAQLGLQLSIENGYKRFITLVADARHSTPE-QIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVA  208 (211)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHH-HHHHhcCCcEEeHHHHHHcCCcccCCCHHHHHH
Confidence                                      0111111 223345788999999999999999987666544

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.52  E-value=3.5e-14  Score=151.42  Aligned_cols=97  Identities=22%  Similarity=0.194  Sum_probs=91.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCCCCCCCHH
Q 004972          617 EKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRF  696 (721)
Q Consensus       617 ~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~  696 (721)
                      ++++.||++.++++||+.++++|++ +++++|.++..|+|||++..|||+++|..|++.+.+++..+++.++++|.|+++
T Consensus       183 ~G~i~nr~~~~~~~Ea~~l~~~g~~-~~~~id~~~~~~~g~~~~~~Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~~  261 (311)
T PRK06130        183 PGFIANRIQHALAREAISLLEKGVA-SAEDIDEVVKWSLGIRLALTGPLEQRDMNGLDVHLAVASYLYQDLENRTTPSPL  261 (311)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhcCCCCccCCCHHHHhhhhccchHHHHHHHHHHhcCCcCCCCHH
Confidence            5789999999999999999999999 999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH-------HcCCCCcCCCCCC
Q 004972          697 LEERA-------TKGIPLSAPVSSS  714 (721)
Q Consensus       697 l~~~~-------~~g~~f~~~~~~~  714 (721)
                      |++|+       |+|+|||+|++..
T Consensus       262 l~~~~~~g~~G~~~g~gfy~y~~~~  286 (311)
T PRK06130        262 LEEKVEAGELGAKSGQGFYAWPPER  286 (311)
T ss_pred             HHHHHHcCCccccCCCcCccCCCCC
Confidence            99999       8899999996543

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=99.51  E-value=5.7e-13  Score=133.65  Aligned_cols=189  Identities=19%  Similarity=0.160  Sum_probs=130.4

Q ss_pred             CceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972          304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  383 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  383 (721)
                      ..++||+||+|.||++|+.+|.++||.|++|||+.++.+...           +.|.            -...+..|.++
T Consensus        34 s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~-----------~~Ga------------~v~~sPaeVae   90 (327)
T KOG0409|consen   34 SKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQ-----------EAGA------------RVANSPAEVAE   90 (327)
T ss_pred             ccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHH-----------Hhch------------hhhCCHHHHHh
Confidence            468999999999999999999999999999999999876642           3331            11123337789


Q ss_pred             CCCEEEEcccCChHHHHHHHHH--HHhhCCCCeEE-EecCCCCCH---HHHhcccCC-CCcEEEecCC---CCCCCCCee
Q 004972          384 DVDMVIEAVIESVPLKQKIFSE--LEKACPPHCIL-ATNTSTIDL---NIVGEKTSS-QDRIIGAHFF---SPAHVMPLL  453 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~~~--l~~~~~~~~ii-~s~ts~~~i---~~l~~~~~~-~~r~ig~h~~---~p~~~~~lv  453 (721)
                      +||+||.+||....++..++..  +...++++... ++ .|++.+   .++++.... ..+++-..--   .++.. ..+
T Consensus        91 ~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vD-mSTidp~~s~ei~~~i~~~~~~~vDAPVSGg~~~A~~-G~L  168 (327)
T KOG0409|consen   91 DSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVD-MSTIDPDTSLEIAKAISNKGGRFVDAPVSGGVKGAEE-GTL  168 (327)
T ss_pred             hcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEe-ccccCHHHHHHHHHHHHhCCCeEEeccccCCchhhhc-CeE
Confidence            9999999999888888777764  23333344333 33 333332   366665543 2233321110   11122 224


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCC----chhhhhhhhHH----HHHHHHHHHc-CCCHHHHHHHH
Q 004972          454 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCT----GFAVNRAFFPY----SQSARLLVSL-GVDVFRIDSAI  519 (721)
Q Consensus       454 Eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~----gfi~nRl~~~~----~~Ea~~l~~~-Gv~~~~ID~a~  519 (721)
                      .+..+  .+++.++++.++++.+||++++++...    .-+.|+++.+.    +.|++.+.+. |+|+..+-.++
T Consensus       169 timag--Gde~~~~~~~~~~~~mGk~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eil  241 (327)
T KOG0409|consen  169 TIMAG--GDEALFEAASPVFKLMGKNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEIL  241 (327)
T ss_pred             EEEec--CcHHHHHHHHHHHHHhcceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            44444  589999999999999999999997632    24677776543    3599999988 99999998888

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=99.51  E-value=4.1e-14  Score=165.73  Aligned_cols=92  Identities=24%  Similarity=0.280  Sum_probs=86.6

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCCCCCCCH
Q 004972          616 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSR  695 (721)
Q Consensus       616 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~  695 (721)
                      ++++|.||++.+++|||++++++|+  +++|||.+++ ++|||+   |||+++|.+|+|.++++++.+.+.++++|.|++
T Consensus       491 ~pGfi~nRl~~~~~~EA~~lv~eGv--~~~dID~a~~-~~G~p~---GPf~~~D~~Gld~~~~i~~~l~~~~~~~~~~~~  564 (708)
T PRK11154        491 GAGFYVNRILAPYINEAARLLLEGE--PIEHIDAALV-KFGFPV---GPITLLDEVGIDVGTKIIPILEAALGERFSAPA  564 (708)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHH-HcCCCC---CHHHHHHHhhhHHHHHHHHHHHHHcCCCCCCCH
Confidence            5799999999999999999999997  6999999998 899998   999999999999999999999999999999999


Q ss_pred             HHHHHH-------HcCCCCcCCCCC
Q 004972          696 FLEERA-------TKGIPLSAPVSS  713 (721)
Q Consensus       696 ~l~~~~-------~~g~~f~~~~~~  713 (721)
                      +|++|+       |+|+|||+|.+.
T Consensus       565 ~l~~~v~~g~~G~k~g~GfY~y~~~  589 (708)
T PRK11154        565 AFDKLLNDDRKGRKNGRGFYLYGQK  589 (708)
T ss_pred             HHHHHHHCCCCcccCCceEEECCCC
Confidence            999999       789999999643

>PRK08507 prephenate dehydrogenase; Validated

Probab=99.50  E-value=1.2e-12  Score=136.87  Aligned_cols=151  Identities=19%  Similarity=0.188  Sum_probs=110.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972          307 KVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  384 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  384 (721)
                      ||+|||+|.||+++|..|.++|+  +|++||++++.++.+.           +.|.            +...++.+.+.+
T Consensus         2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~-----------~~g~------------~~~~~~~~~~~~   58 (275)
T PRK08507          2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKAL-----------ELGL------------VDEIVSFEELKK   58 (275)
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH-----------HCCC------------CcccCCHHHHhc
Confidence            79999999999999999999996  7899999998866542           1221            111223333456


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccC--CCCcEEEecCCCC------CC------CC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTS--SQDRIIGAHFFSP------AH------VM  450 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~--~~~r~ig~h~~~p------~~------~~  450 (721)
                      ||+||.|+|  .....+++.++.+ ++++++|++.+|+..  .+.+.+.  .+.+|++.||+.+      ..      .+
T Consensus        59 aD~Vilavp--~~~~~~~~~~l~~-l~~~~iv~d~gs~k~--~i~~~~~~~~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g  133 (275)
T PRK08507         59 CDVIFLAIP--VDAIIEILPKLLD-IKENTTIIDLGSTKA--KIIESVPKHIRKNFIAAHPMAGTENSGPKAAIKGLYEG  133 (275)
T ss_pred             CCEEEEeCc--HHHHHHHHHHHhc-cCCCCEEEECccchH--HHHHHHHHhcCCCEEecCCcCcCchhhHHhccHHHhCC
Confidence            999999999  6667788888888 888988887555322  2222221  2357999999742      21      34


Q ss_pred             CeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004972          451 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN  485 (721)
Q Consensus       451 ~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d  485 (721)
                      ..+.+++.+.++++.++.+.++++.+|..++.+.+
T Consensus       134 ~~~il~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~  168 (275)
T PRK08507        134 KVVVLCDVEKSGEKHQERAKEIFSGLGMRIVYMDA  168 (275)
T ss_pred             CeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEeCH
Confidence            45667788888999999999999999999999853

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=99.50  E-value=3.6e-14  Score=136.30  Aligned_cols=148  Identities=16%  Similarity=0.133  Sum_probs=101.1

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  383 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  383 (721)
                      |+||+|||+|.||++||.+|+++|++|++||+++++.++..+           .             .....+++ +.++
T Consensus         1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~-----------~-------------g~~~~~s~~e~~~   56 (163)
T PF03446_consen    1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAE-----------A-------------GAEVADSPAEAAE   56 (163)
T ss_dssp             -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHH-----------T-------------TEEEESSHHHHHH
T ss_pred             CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHH-----------h-------------hhhhhhhhhhHhh
Confidence            579999999999999999999999999999999998777532           1             24455565 6678


Q ss_pred             CCCEEEEcccCChHHHHHHHHH--HHhhCCCCeEEEecCCCCCHH---HHhcccCCCCcEEEecCCCCC--------CCC
Q 004972          384 DVDMVIEAVIESVPLKQKIFSE--LEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPA--------HVM  450 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~~~--l~~~~~~~~ii~s~ts~~~i~---~l~~~~~~~~r~ig~h~~~p~--------~~~  450 (721)
                      +||+||.|+|.+.+ .++++.+  +.+.+++++++++.+ +..++   ++++.+...    |.||.+.|        ..+
T Consensus        57 ~~dvvi~~v~~~~~-v~~v~~~~~i~~~l~~g~iiid~s-T~~p~~~~~~~~~~~~~----g~~~vdapV~Gg~~~a~~g  130 (163)
T PF03446_consen   57 QADVVILCVPDDDA-VEAVLFGENILAGLRPGKIIIDMS-TISPETSRELAERLAAK----GVRYVDAPVSGGPPGAEEG  130 (163)
T ss_dssp             HBSEEEE-SSSHHH-HHHHHHCTTHGGGS-TTEEEEE-S-S--HHHHHHHHHHHHHT----TEEEEEEEEESHHHHHHHT
T ss_pred             cccceEeecccchh-hhhhhhhhHHhhccccceEEEecC-Ccchhhhhhhhhhhhhc----cceeeeeeeeccccccccc
Confidence            99999999995444 5566666  888889999888544 44443   444443221    34554333        223


Q ss_pred             CeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEE-cC
Q 004972          451 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV-GN  485 (721)
Q Consensus       451 ~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v-~d  485 (721)
                      .+.-++.|   +++++++++++++.++++++++ ++
T Consensus       131 ~l~~~~gG---~~~~~~~~~~~l~~~~~~v~~~~G~  163 (163)
T PF03446_consen  131 TLTIMVGG---DEEAFERVRPLLEAMGKNVYHYVGP  163 (163)
T ss_dssp             TEEEEEES----HHHHHHHHHHHHHHEEEEEEE-ES
T ss_pred             ceEEEccC---CHHHHHHHHHHHHHHhCCceeeeCc
Confidence            34445555   6899999999999999998854 64

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=99.50  E-value=5.2e-14  Score=164.42  Aligned_cols=92  Identities=25%  Similarity=0.289  Sum_probs=86.8

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCCCCCCCH
Q 004972          616 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSR  695 (721)
Q Consensus       616 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~  695 (721)
                      ++++|.||++.+++|||++++++|+  +++|||.++. ++|||+   |||+++|.+|+|.++++++.+.+.++++|.|++
T Consensus       486 ~pGfi~nRl~~~~~~Ea~~l~~~G~--~~~dID~a~~-~~G~p~---GPf~l~D~vGld~~~~i~~~l~~~~~~~~~~~~  559 (699)
T TIGR02440       486 KAGFYVNRILAPYMNEAARLLLEGE--PVEHIDKALV-KFGFPV---GPITLLDEVGIDVGAKISPILEAELGERFKAPA  559 (699)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHH-HcCCCc---CHHHHHHHhchHHHHHHHHHHHHhcCCCCCCcH
Confidence            5799999999999999999999995  8999999996 999998   999999999999999999999999999999999


Q ss_pred             HHHHHH-------HcCCCCcCCCCC
Q 004972          696 FLEERA-------TKGIPLSAPVSS  713 (721)
Q Consensus       696 ~l~~~~-------~~g~~f~~~~~~  713 (721)
                      +|++|+       |+|+|||+|.+.
T Consensus       560 ~l~~~v~~G~lG~ksg~GfY~y~~~  584 (699)
T TIGR02440       560 VFDKLLSDDRKGRKNGKGFYLYGAA  584 (699)
T ss_pred             HHHHHHHCCCCcccCCcEEEeCCCC
Confidence            999999       789999999643

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK06545 prephenate dehydrogenase; Validated

Probab=99.49  E-value=5.8e-13  Score=144.38  Aligned_cols=221  Identities=16%  Similarity=0.100  Sum_probs=142.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|+|||+|.||++||..|.++|++|.+|+++++..+....         ...+..+           ..++++ +.+++
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a---------~~~~~~~-----------~~~~~~~~~~~~   60 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARA---------LGFGVID-----------ELAADLQRAAAE   60 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHH---------hcCCCCc-----------ccccCHHHHhcC
Confidence            47999999999999999999999999999998876443211         1111111           112333 45789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHh-hCCCCeEEEecCCCC--CHHHHhcccCCCCcEEEecCCCCC------------CC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEK-ACPPHCILATNTSTI--DLNIVGEKTSSQDRIIGAHFFSPA------------HV  449 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~-~~~~~~ii~s~ts~~--~i~~l~~~~~~~~r~ig~h~~~p~------------~~  449 (721)
                      ||+||+|+|  ......+++++.+ .++++++|++.+|..  .+..+........+|++.||+...            ..
T Consensus        61 aDlVilavP--~~~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~  138 (359)
T PRK06545         61 ADLIVLAVP--VDATAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFE  138 (359)
T ss_pred             CCEEEEeCC--HHHHHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHC
Confidence            999999999  5677899999987 478888887655542  234444444556789999986433            12


Q ss_pred             CCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEE-cCCCchhhhhh--hhHHHHHHHHHHHcCCCHHHHHHHHHhcCCC-
Q 004972          450 MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRA--FFPYSQSARLLVSLGVDVFRIDSAIRSFGLP-  525 (721)
Q Consensus       450 ~~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v-~d~~gfi~nRl--~~~~~~Ea~~l~~~Gv~~~~ID~a~~~~G~p-  525 (721)
                      +...-+++++.++++.++.++++++.+|+.++++ .+.+..++..+  +-.++.+++ ....+.+..+.-.. .+-||. 
T Consensus       139 g~~~il~~~~~~~~~~~~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia~al-~~~~~~~~~~~~~l-a~~gfrd  216 (359)
T PRK06545        139 NAPWVLTPDDHTDPDAVAELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILASSL-AARLAGEHPLALRL-AAGGFRD  216 (359)
T ss_pred             CCcEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHHHHH-HHhhccCchHHHhh-hcccccC
Confidence            3335578888899999999999999999999988 34455555555  233445544 11223322222222 223332 


Q ss_pred             ------ccHHHHHHhhch--HHHHHHHHHHHHh
Q 004972          526 ------IGPFQLLDLAGY--GVAAATSKEFDKA  550 (721)
Q Consensus       526 ------~Gpf~~~D~~Gl--d~~~~~~~~l~~~  550 (721)
                            .-|-.|.|.+--  +.+...++.+...
T Consensus       217 ~tRia~~~p~~w~di~~~N~~~~~~~l~~~~~~  249 (359)
T PRK06545        217 ITRIASSDPGMWRDILESNAEALLDALDEWIED  249 (359)
T ss_pred             CccccCCCHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence                  267777777642  2233444444333

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=99.49  E-value=2.9e-13  Score=142.57  Aligned_cols=181  Identities=18%  Similarity=0.159  Sum_probs=126.8

Q ss_pred             EEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCCCCEE
Q 004972          310 VIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVDMV  388 (721)
Q Consensus       310 VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~aDlV  388 (721)
                      |||+|.||.+||..|+++|++|++||+++++++...           +.|             +..+++. +.+++||+|
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~g-------------~~~~~s~~~~~~~advV   56 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAV-----------AAG-------------AQAAASPAEAAEGADRV   56 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHH-----------HcC-------------CeecCCHHHHHhcCCEE
Confidence            689999999999999999999999999998876642           112             2233444 567899999


Q ss_pred             EEcccCChHHHHHHH---HHHHhhCCCCeEEEecCCCCCHH---HHhcccCCCCcEEEecCCCCCCC--------CCeeE
Q 004972          389 IEAVIESVPLKQKIF---SELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHV--------MPLLE  454 (721)
Q Consensus       389 Ieavpe~~~~k~~v~---~~l~~~~~~~~ii~s~ts~~~i~---~l~~~~~~~~r~ig~h~~~p~~~--------~~lvE  454 (721)
                      |.|||.+..+ +.++   .++.+.+++++++++.+ ++.+.   ++.+.+..    .|.+|.+.|..        +.+.-
T Consensus        57 il~vp~~~~~-~~v~~g~~~l~~~~~~g~~vid~s-t~~p~~~~~~~~~~~~----~g~~~vdaPv~Gg~~~a~~g~l~~  130 (288)
T TIGR01692        57 ITMLPAGQHV-ISVYSGDEGILPKVAKGSLLIDCS-TIDPDSARKLAELAAA----HGAVFMDAPVSGGVGGARAGTLTF  130 (288)
T ss_pred             EEeCCChHHH-HHHHcCcchHhhcCCCCCEEEECC-CCCHHHHHHHHHHHHH----cCCcEEECCCCCCHHHHhhCcEEE
Confidence            9999965544 4455   56777778888887544 55554   33333321    14455443322        22333


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCCeeEEEcC-CCch---hhhhhhhH----HHHHHHHHHHc-CCCHHHHHHHH-HhcC
Q 004972          455 IVRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTGF---AVNRAFFP----YSQSARLLVSL-GVDVFRIDSAI-RSFG  523 (721)
Q Consensus       455 iv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d-~~gf---i~nRl~~~----~~~Ea~~l~~~-Gv~~~~ID~a~-~~~G  523 (721)
                      ++.|   +++.+++++++++.+|+.++++++ ..|.   ++|+++..    .+.|++.+.+. |++++++..++ .+.|
T Consensus       131 ~~gg---~~~~~~~~~~~l~~~g~~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~  206 (288)
T TIGR01692       131 MVGG---VAEEFAAAEPVLGPMGRNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSG  206 (288)
T ss_pred             EECC---CHHHHHHHHHHHHHhcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCc
Confidence            3444   678999999999999999999987 3333   55555433    35799999988 99999999998 5554

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=99.45  E-value=1.2e-12  Score=137.78  Aligned_cols=182  Identities=18%  Similarity=0.173  Sum_probs=122.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCCC
Q 004972          307 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV  385 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~a  385 (721)
                      ||+|||+|.||.+||..|.++|++|++||+++. .+..           .+.|             ....++. +.+++|
T Consensus         2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~-----------~~~g-------------~~~~~s~~~~~~~a   56 (292)
T PRK15059          2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADEL-----------LSLG-------------AVSVETARQVTEAS   56 (292)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHH-----------HHcC-------------CeecCCHHHHHhcC
Confidence            799999999999999999999999999999874 2221           1122             1122233 557899


Q ss_pred             CEEEEcccCChHHHHHHHHH--HHhhCCCCeEEEecCCCCCHH---HHhcccC-CCCcEEEecCCCCC----CCCCeeEE
Q 004972          386 DMVIEAVIESVPLKQKIFSE--LEKACPPHCILATNTSTIDLN---IVGEKTS-SQDRIIGAHFFSPA----HVMPLLEI  455 (721)
Q Consensus       386 DlVIeavpe~~~~k~~v~~~--l~~~~~~~~ii~s~ts~~~i~---~l~~~~~-~~~r~ig~h~~~p~----~~~~lvEi  455 (721)
                      |+||.|||++..+...++..  +...+.+++++++. |+..+.   ++++.+. +..+|+. +|....    ..+.+.-+
T Consensus        57 dvVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd~-sT~~p~~~~~~~~~~~~~G~~~vd-aPVsGg~~~a~~g~l~~~  134 (292)
T PRK15059         57 DIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVDM-SSISPIETKRFARQVNELGGDYLD-APVSGGEIGAREGTLSIM  134 (292)
T ss_pred             CEEEEeCCChHHHHHHHcCCcchhccCCCCCEEEEC-CCCCHHHHHHHHHHHHHcCCCEEE-ecCCCCHHHHhcCcEEEE
Confidence            99999999776665555432  55556778887754 444443   3334332 3334555 333221    12222223


Q ss_pred             ecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCc-----hhhhhhhhH----HHHHHHHHHHc-CCCHHHHHHHH
Q 004972          456 VRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG-----FAVNRAFFP----YSQSARLLVSL-GVDVFRIDSAI  519 (721)
Q Consensus       456 v~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~g-----fi~nRl~~~----~~~Ea~~l~~~-Gv~~~~ID~a~  519 (721)
                      +.|   +++++++++++++.+|+.++++++. |     -++|.++..    .+.|++.+.+. |++++++-.++
T Consensus       135 ~gG---~~~~~~~~~p~l~~~g~~~~~~G~~-G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l  204 (292)
T PRK15059        135 VGG---DEAVFERVKPLFELLGKNITLVGGN-GDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQAL  204 (292)
T ss_pred             EcC---CHHHHHHHHHHHHHHcCCcEEeCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            333   7999999999999999999999873 4     244555433    35699999877 99999987777

>PRK08655 prephenate dehydrogenase; Provisional

Probab=99.45  E-value=2.4e-12  Score=142.62  Aligned_cols=154  Identities=18%  Similarity=0.164  Sum_probs=120.2

Q ss_pred             eeEEEEc-CCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972          306 RKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  383 (721)
Q Consensus       306 ~kI~VIG-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  383 (721)
                      +||+||| +|.||+++|..|.+.|++|++||++++.......          +.|             +..+++. +.+.
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~----------~~g-------------v~~~~~~~e~~~   57 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAK----------ELG-------------VEYANDNIDAAK   57 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHH----------HcC-------------CeeccCHHHHhc
Confidence            3799998 7999999999999999999999999876533211          111             2233444 5678


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccCCCCcEEEecCCC----CCCCCCeeEEec
Q 004972          384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFS----PAHVMPLLEIVR  457 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~~~~r~ig~h~~~----p~~~~~lvEiv~  457 (721)
                      +||+||.|+|  ......++.++.+.++++++|++.+|+  .+...+.+..+...+|++.||+.    |...+..+.+++
T Consensus        58 ~aDvVIlavp--~~~~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~~~~~g~~~il~p  135 (437)
T PRK08655         58 DADIVIISVP--INVTEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPMFGPRTPSLKGQVVILTP  135 (437)
T ss_pred             cCCEEEEecC--HHHHHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCCCCCCCcccCCCEEEEec
Confidence            9999999999  666678899999999999999887774  44455665555556899999764    334556677888


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004972          458 TERTSAQVILDLMTVGKIIKKVPVVVG  484 (721)
Q Consensus       458 ~~~t~~e~~~~~~~l~~~lG~~~v~v~  484 (721)
                      ++.++++.++.+.++++.+|..++.+.
T Consensus       136 ~~~~~~~~~~~v~~ll~~~G~~v~~~~  162 (437)
T PRK08655        136 TEKRSNPWFDKVKNFLEKEGARVIVTS  162 (437)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCEEEECC
Confidence            888899999999999999999999874

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=99.45  E-value=1.3e-12  Score=144.02  Aligned_cols=198  Identities=15%  Similarity=0.187  Sum_probs=128.8

Q ss_pred             CceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHH--------HHHHHHhhhhcCCCCHHHHHHhhcCcee
Q 004972          304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT--------IEANVRGLVTRGKLTQDKANNALKMLKG  375 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~i~~  375 (721)
                      .++||+|||+|+||.++|..|+++|++|++||+++++++.....        +...+.+.++            .+++.+
T Consensus         2 ~~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~------------~g~l~~   69 (415)
T PRK11064          2 SFETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVE------------GGYLRA   69 (415)
T ss_pred             CccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhh------------cCceee
Confidence            36799999999999999999999999999999999998764211        0001111111            234555


Q ss_pred             ccCccccCCCCEEEEcccCC--------hHHHHHHHHHHHhhCCCCeEEEecCCCCCHH---HHhcccCC--CC-cE--E
Q 004972          376 VLDYSEFKDVDMVIEAVIES--------VPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSS--QD-RI--I  439 (721)
Q Consensus       376 ~~~~~~l~~aDlVIeavpe~--------~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~---~l~~~~~~--~~-r~--i  439 (721)
                      +++   +++||+||.|||.+        ......+.+.+.++++++++|+..|+ .++.   ++...+..  +. .+  -
T Consensus        70 ~~~---~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~ST-v~pgtt~~~~~~l~~~~~~~~~~~~  145 (415)
T PRK11064         70 TTT---PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILEST-SPVGATEQMAEWLAEARPDLTFPQQ  145 (415)
T ss_pred             ecc---cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCC-CCCCHHHHHHHHHHHhccCCccccc
Confidence            554   35899999999964        36667778889999999988865333 3322   22221110  00 00  0


Q ss_pred             ---E--ecC-CCCCCCCC--ee-------EEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCC-----chhhhhh---hh
Q 004972          440 ---G--AHF-FSPAHVMP--LL-------EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCT-----GFAVNRA---FF  496 (721)
Q Consensus       440 ---g--~h~-~~p~~~~~--lv-------Eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~-----gfi~nRl---~~  496 (721)
                         +  .++ ++|-...+  .+       -++.|  .+++..+.+.++++.++..++++++..     .++.|-+   ..
T Consensus       146 ~g~~~~f~v~~~PE~~~~G~~~~~~~~~~~vvgG--~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~i  223 (415)
T PRK11064        146 AGEQADINIAYCPERVLPGQVMVELIKNDRVIGG--MTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNI  223 (415)
T ss_pred             ccCCCCeEEEECCCccCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHH
Confidence               0  011 23322111  11       24444  378999999999999998887776511     2333433   24


Q ss_pred             HHHHHHHHHHHc-CCCHHHHHHHH
Q 004972          497 PYSQSARLLVSL-GVDVFRIDSAI  519 (721)
Q Consensus       497 ~~~~Ea~~l~~~-Gv~~~~ID~a~  519 (721)
                      +++||+..+++. |+|+.++-+++
T Consensus       224 a~~nE~~~lae~~GiD~~~v~~~~  247 (415)
T PRK11064        224 AFANELSLICADQGINVWELIRLA  247 (415)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHh
Confidence            678999999988 99999998887

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=99.45  E-value=1.2e-12  Score=145.12  Aligned_cols=192  Identities=13%  Similarity=0.104  Sum_probs=132.3

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc-
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF-  382 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l-  382 (721)
                      |.+|+|||+|.||++||.+|+++|++|++||+++++++...+...       ..|.           .+..++++ +.+ 
T Consensus         1 ~~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~-------~~g~-----------~i~~~~s~~e~v~   62 (470)
T PTZ00142          1 MSDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAK-------EGNT-----------RVKGYHTLEELVN   62 (470)
T ss_pred             CCEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhh-------hcCC-----------cceecCCHHHHHh
Confidence            358999999999999999999999999999999999877543110       0110           13334454 223 


Q ss_pred             --CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCC--------CCe
Q 004972          383 --KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHV--------MPL  452 (721)
Q Consensus       383 --~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~--------~~l  452 (721)
                        +++|+||.+||. .+...+++.++.+.+.++.||++.+++.+...........+  -|+||...|-.        ++ 
T Consensus        63 ~l~~~d~Iil~v~~-~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~--~Gi~fldapVSGG~~gA~~G~-  138 (470)
T PTZ00142         63 SLKKPRKVILLIKA-GEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEE--KGILYLGMGVSGGEEGARYGP-  138 (470)
T ss_pred             cCCCCCEEEEEeCC-hHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHH--cCCeEEcCCCCCCHHHHhcCC-
Confidence              468999999884 45566777899999999999988777655443322211111  15666543322        22 


Q ss_pred             eEEecCCCCCHHHHHHHHHHHHHcCCe------eEEEcCC-Cc----hhhhhhhhHH---HHHHHHHHH--cCCCHHHHH
Q 004972          453 LEIVRTERTSAQVILDLMTVGKIIKKV------PVVVGNC-TG----FAVNRAFFPY---SQSARLLVS--LGVDVFRID  516 (721)
Q Consensus       453 vEiv~~~~t~~e~~~~~~~l~~~lG~~------~v~v~d~-~g----fi~nRl~~~~---~~Ea~~l~~--~Gv~~~~ID  516 (721)
                       -+++|.  ++++++.++++++.++.+      ..++++. .|    .+.|-+.++.   +.|++.+++  .|++++++-
T Consensus       139 -~lm~GG--~~~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~  215 (470)
T PTZ00142        139 -SLMPGG--NKEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELS  215 (470)
T ss_pred             -EEEEeC--CHHHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHH
Confidence             245543  799999999999999987      6778763 22    2335554444   459999986  489999998


Q ss_pred             HHHHh
Q 004972          517 SAIRS  521 (721)
Q Consensus       517 ~a~~~  521 (721)
                      .++..
T Consensus       216 ~v~~~  220 (470)
T PTZ00142        216 EVFNK  220 (470)
T ss_pred             HHHHH
Confidence            88743

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=99.45  E-value=1.7e-12  Score=134.10  Aligned_cols=156  Identities=17%  Similarity=0.201  Sum_probs=118.0

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHH--HHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccC--cc
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY--LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD--YS  380 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~~  380 (721)
                      .++|+|+|+|.||+++|..+.+.|+.|.+++++...  .+.+           ...|..+           ..+.+  .+
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a-----------~~lgv~d-----------~~~~~~~~~   60 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAA-----------LELGVID-----------ELTVAGLAE   60 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHH-----------hhcCccc-----------ccccchhhh
Confidence            468999999999999999999999988666665543  3332           1222211           01122  35


Q ss_pred             ccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCC--CHHHHhcccCCCCcEEEecCCCCCC------CCCe
Q 004972          381 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTSSQDRIIGAHFFSPAH------VMPL  452 (721)
Q Consensus       381 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--~i~~l~~~~~~~~r~ig~h~~~p~~------~~~l  452 (721)
                      .+.+||+||.|||  .....++++++.+.++++++|++.+|+.  ++..+....+...+|+|.||...++      ....
T Consensus        61 ~~~~aD~VivavP--i~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~  138 (279)
T COG0287          61 AAAEADLVIVAVP--IEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAV  138 (279)
T ss_pred             hcccCCEEEEecc--HHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCE
Confidence            6788999999999  9999999999999999999999877763  3445555443323899999976662      2344


Q ss_pred             eEEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004972          453 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVG  484 (721)
Q Consensus       453 vEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~  484 (721)
                      +-+++++.++.+.++.++.+++.+|..++.+.
T Consensus       139 ~vltp~~~~~~~~~~~~~~~~~~~ga~~v~~~  170 (279)
T COG0287         139 VVLTPSEGTEKEWVEEVKRLWEALGARLVEMD  170 (279)
T ss_pred             EEEcCCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence            66778888899999999999999999999884

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=99.44  E-value=1.1e-12  Score=145.52  Aligned_cols=193  Identities=12%  Similarity=0.121  Sum_probs=127.7

Q ss_pred             CceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-c--
Q 004972          304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S--  380 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~--  380 (721)
                      .+.+|||||+|.||.+||.+|+++|++|++|||++++.+...+...       ..|.          ..+....++ +  
T Consensus         5 ~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~-------~~Ga----------~~~~~a~s~~e~v   67 (493)
T PLN02350          5 ALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------KEGN----------LPLYGFKDPEDFV   67 (493)
T ss_pred             CCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhh-------hcCC----------cccccCCCHHHHH
Confidence            3568999999999999999999999999999999999876532100       0020          011223333 2  


Q ss_pred             -ccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH--HHhcccC-CCCcEEEecCCCC---CCCCCee
Q 004972          381 -EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSP---AHVMPLL  453 (721)
Q Consensus       381 -~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~--~l~~~~~-~~~r~ig~h~~~p---~~~~~lv  453 (721)
                       .++.+|+||.|||.+..+ ++++..+.+.+.++.|+++.++..+.+  .+.+.+. ..-+|+++-....   +..++  
T Consensus        68 ~~l~~~dvIi~~v~~~~aV-~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~--  144 (493)
T PLN02350         68 LSIQKPRSVIILVKAGAPV-DQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGP--  144 (493)
T ss_pred             hcCCCCCEEEEECCCcHHH-HHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCC--
Confidence             334599999999966655 455578888888888888655543322  3333332 2223333332211   12333  


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHcCCe------eEEEcCCCc------hhhhhhhhHH---HHHHHHHHHc--CCCHHHHH
Q 004972          454 EIVRTERTSAQVILDLMTVGKIIKKV------PVVVGNCTG------FAVNRAFFPY---SQSARLLVSL--GVDVFRID  516 (721)
Q Consensus       454 Eiv~~~~t~~e~~~~~~~l~~~lG~~------~v~v~d~~g------fi~nRl~~~~---~~Ea~~l~~~--Gv~~~~ID  516 (721)
                      .+++|.  +++++++++++++.++.+      ++++++ +|      .+.|-+.+..   +.|++.+++.  |++++++-
T Consensus       145 ~im~GG--~~~a~~~v~pvL~~ia~k~~~~~~v~~vG~-~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~  221 (493)
T PLN02350        145 SLMPGG--SFEAYKNIEDILEKVAAQVDDGPCVTYIGP-GGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELA  221 (493)
T ss_pred             eEEecC--CHHHHHHHHHHHHHHhhhcCCCCcEEEeCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHH
Confidence            345543  899999999999999964      788887 34      2334444443   4599999875  89999999


Q ss_pred             HHH
Q 004972          517 SAI  519 (721)
Q Consensus       517 ~a~  519 (721)
                      .++
T Consensus       222 ~vf  224 (493)
T PLN02350        222 EVF  224 (493)
T ss_pred             HHH
Confidence            885

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=99.44  E-value=1.6e-12  Score=143.85  Aligned_cols=201  Identities=19%  Similarity=0.178  Sum_probs=131.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHH--hhcCceeccCc-cccC
Q 004972          307 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANN--ALKMLKGVLDY-SEFK  383 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~i~~~~~~-~~l~  383 (721)
                      ||+|||+|.||.++|..|+++|++|++||+++++++........    ..+.+ + .+....  ..++++.++++ +.++
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~----~~e~~-l-~~~~~~~~~~g~l~~~~~~~~~~~   75 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSP----IYEPG-L-DELLAKALAAGRLRATTDYEDAIR   75 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCC----CCCCC-H-HHHHHHhhhcCCeEEECCHHHHHh
Confidence            79999999999999999999999999999999988764321000    00000 0 000000  12446777777 4589


Q ss_pred             CCCEEEEcccCCh--------HHHHHHHHHHHhhCCCCeEEEecCCCCCHH---HHhc-ccCC-------CCcEEEecCC
Q 004972          384 DVDMVIEAVIESV--------PLKQKIFSELEKACPPHCILATNTSTIDLN---IVGE-KTSS-------QDRIIGAHFF  444 (721)
Q Consensus       384 ~aDlVIeavpe~~--------~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~---~l~~-~~~~-------~~r~ig~h~~  444 (721)
                      +||+||.|||.+.        .....+.+++.+.++++++++. +|++++.   ++.. ....       ..-.+..+| 
T Consensus        76 ~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~-~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~P-  153 (411)
T TIGR03026        76 DADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVL-ESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNP-  153 (411)
T ss_pred             hCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEE-eCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECC-
Confidence            9999999999764        3466777888888888887764 3444332   3321 1111       111233343 


Q ss_pred             CCCCCCCee---------EEecCCCCCHHHHHHHHHHHHHcC-CeeEEEcCCC-----chhhhhh---hhHHHHHHHHHH
Q 004972          445 SPAHVMPLL---------EIVRTERTSAQVILDLMTVGKIIK-KVPVVVGNCT-----GFAVNRA---FFPYSQSARLLV  506 (721)
Q Consensus       445 ~p~~~~~lv---------Eiv~~~~t~~e~~~~~~~l~~~lG-~~~v~v~d~~-----gfi~nRl---~~~~~~Ea~~l~  506 (721)
                        ....+.-         .++.|  .+++..+.++++++.++ +.++++++..     .++.|-+   ..+++||+..++
T Consensus       154 --e~~~~G~~~~~~~~~~~iv~G--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la  229 (411)
T TIGR03026       154 --EFLREGNAVHDLLNPDRIVGG--ETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARIC  229 (411)
T ss_pred             --CcCCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              2211111         24555  48999999999999998 5777776522     2333433   256789999999


Q ss_pred             Hc-CCCHHHHHHHH
Q 004972          507 SL-GVDVFRIDSAI  519 (721)
Q Consensus       507 ~~-Gv~~~~ID~a~  519 (721)
                      +. |+++.++-.++
T Consensus       230 ~~~GiD~~~v~~~~  243 (411)
T TIGR03026       230 EALGIDVYEVIEAA  243 (411)
T ss_pred             HHhCCCHHHHHHHh
Confidence            88 99999998888

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=99.42  E-value=5.1e-13  Score=156.52  Aligned_cols=101  Identities=20%  Similarity=0.182  Sum_probs=92.5

Q ss_pred             HHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCC--CHHHHHHHH-HhcCCCc---cHHHHHHhhchHHHHH
Q 004972          469 LMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV--DVFRIDSAI-RSFGLPI---GPFQLLDLAGYGVAAA  542 (721)
Q Consensus       469 ~~~l~~~lG~~~v~v~d~~gfi~nRl~~~~~~Ea~~l~~~Gv--~~~~ID~a~-~~~G~p~---Gpf~~~D~~Gld~~~~  542 (721)
                      +..++..+++.++.+.+.+|||+||++.+++||+++++++|+  +|+|||.++ .++|||+   |||+++|.+|+|.+++
T Consensus       627 v~~~~~~~~k~p~~~~~~~g~I~~Rll~~~~nEA~rlLeEGV~a~~~DID~a~~~G~GfP~~~gGP~~~aD~~Gld~v~~  706 (737)
T TIGR02441       627 ADEILAQYKLPPKAEVSSPEDIQIRLVSRFVNEAVLCLEEGILASPSEGDIGAVFGLGFPPFLGGPFRFVDLYGADKLVD  706 (737)
T ss_pred             HHHHHHHhccCcccccCChHHHHHHHHHHHHHHHHHHhhcCccCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHHH
Confidence            555667788888766789999999999999999999999998  999999999 8999996   9999999999999999


Q ss_pred             HHHHHHHhCCCCCCCcHHHHHHHHc-CC
Q 004972          543 TSKEFDKAFPDRSFQSPLVDLLLKS-GR  569 (721)
Q Consensus       543 ~~~~l~~~~~~~~~~~~~l~~~v~~-G~  569 (721)
                      .++.+++.+++++.|+++|++|+++ |+
T Consensus       707 ~~~~l~~~~g~~~~p~~lL~~~~~~~g~  734 (737)
T TIGR02441       707 KMEKYAAAYGVQFTPCQLLLDHAKSPGK  734 (737)
T ss_pred             HHHHHHHHhCCCcCCCHHHHHHHHhcCC
Confidence            9999999999887799999999987 64

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=99.41  E-value=4.2e-13  Score=157.27  Aligned_cols=93  Identities=14%  Similarity=0.166  Sum_probs=85.3

Q ss_pred             cChHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCCC--CC
Q 004972          615 VTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNF--FK  692 (721)
Q Consensus       615 ~~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~--~~  692 (721)
                      -++++|.||++++++|||+.++++| + +++|||.++..++|||.   |||+++|.+|+|.++++++.+...++++  +.
T Consensus       493 d~pGfv~nRi~~~~~~ea~~lv~~G-a-~~e~ID~a~~~~~G~~~---GP~~~~D~~Gld~~~~~~~~~~~~~~~~~~~~  567 (715)
T PRK11730        493 DCPGFFVNRVLFPYFAGFSQLLRDG-A-DFRQIDKVMEKQFGWPM---GPAYLLDVVGIDTAHHAQAVMAEGFPDRMKKD  567 (715)
T ss_pred             CcCchhHHHHHHHHHHHHHHHHHcC-C-CHHHHHHHHHhhCCCcc---CHHHHHHhhchHHHHHHHHHHHHhcCCccccc
Confidence            4689999999999999999999999 6 89999999999999998   9999999999999999999999888775  34


Q ss_pred             CCHHHHHHH-------HcCCCCcCCCC
Q 004972          693 PSRFLEERA-------TKGIPLSAPVS  712 (721)
Q Consensus       693 p~~~l~~~~-------~~g~~f~~~~~  712 (721)
                      |+++|++|+       |+|+|||+|.+
T Consensus       568 ~~~~l~~~v~~G~~G~k~g~GfY~y~~  594 (715)
T PRK11730        568 YRDAIDVLFEAKRFGQKNGKGFYRYEE  594 (715)
T ss_pred             hhHHHHHHHHCCCCccccCCEeEeccc
Confidence            678999999       78999999953

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=99.41  E-value=4e-12  Score=135.23  Aligned_cols=157  Identities=18%  Similarity=0.128  Sum_probs=115.3

Q ss_pred             CceeEEEEcCCCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-c
Q 004972          304 GVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  380 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  380 (721)
                      .++||+|||+|.||.++|..|.+.|+  +|++||++++..+.+.           +.|..           ....++. +
T Consensus         5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~-----------~~g~~-----------~~~~~~~~~   62 (307)
T PRK07502          5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAR-----------ELGLG-----------DRVTTSAAE   62 (307)
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH-----------hCCCC-----------ceecCCHHH
Confidence            45799999999999999999999995  8999999998766542           11211           1112233 4


Q ss_pred             ccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCC--CHHHHhcccCCCCcEEEecCCCCCCC---------
Q 004972          381 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTSSQDRIIGAHFFSPAHV---------  449 (721)
Q Consensus       381 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--~i~~l~~~~~~~~r~ig~h~~~p~~~---------  449 (721)
                      .+++||+||+|+|  ......++.++.+.++++++|++.+|..  .+..+........+|++.||+.+...         
T Consensus        63 ~~~~aDvViiavp--~~~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~  140 (307)
T PRK07502         63 AVKGADLVILCVP--VGASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAE  140 (307)
T ss_pred             HhcCCCEEEECCC--HHHHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHH
Confidence            5789999999999  5566788888888888888887654432  12333344444458999999875432         


Q ss_pred             ---CCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004972          450 ---MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG  484 (721)
Q Consensus       450 ---~~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~  484 (721)
                         +..+.+++...++++.++.+.++++.+|..++++.
T Consensus       141 l~~g~~~~l~~~~~~~~~~~~~~~~l~~~lG~~~~~~~  178 (307)
T PRK07502        141 LFENRWCILTPPEGTDPAAVARLTAFWRALGARVEEMD  178 (307)
T ss_pred             HHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence               12345677777889999999999999999998874

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=99.41  E-value=6.6e-12  Score=131.39  Aligned_cols=198  Identities=18%  Similarity=0.261  Sum_probs=136.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHH----HHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-c
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT----IEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  380 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  380 (721)
                      |||+|||+|++|...+.+|+..||+|+++|+++++++...+.    .+..++.+++++..+        +|+++|+|+ +
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~--------gRl~fTtd~~~   72 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLAS--------GRLRFTTDYEE   72 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhcccc--------CcEEEEcCHHH
Confidence            589999999999999999999999999999999999987654    233444455444322        579999999 5


Q ss_pred             ccCCCCEEEEcccC--------ChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH---HHhcccC--CCCc-E-EEe----
Q 004972          381 EFKDVDMVIEAVIE--------SVPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTS--SQDR-I-IGA----  441 (721)
Q Consensus       381 ~l~~aDlVIeavpe--------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~---~l~~~~~--~~~r-~-ig~----  441 (721)
                      +++++|++++|||.        |......+.+++.++++..++++ +-||+|+.   .+.....  .+.+ | +..    
T Consensus        73 a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV-~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEF  151 (414)
T COG1004          73 AVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVV-IKSTVPVGTTEEVRAKIREENSGKDFEVASNPEF  151 (414)
T ss_pred             HHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEE-EcCCCCCCchHHHHHHHHhhcccCCceEecChHH
Confidence            68999999999975        56678888899999998866665 45666653   2222111  1111 0 111    


Q ss_pred             --------cCCCCCCCCCeeEEecCCCCCHHHHHHHHHHHHHc--CCeeEEEcCCC-----chhhhhhh---hHHHHHHH
Q 004972          442 --------HFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKII--KKVPVVVGNCT-----GFAVNRAF---FPYSQSAR  503 (721)
Q Consensus       442 --------h~~~p~~~~~lvEiv~~~~t~~e~~~~~~~l~~~l--G~~~v~v~d~~-----gfi~nRl~---~~~~~Ea~  503 (721)
                              .|++|.++     |+...  ++++.+.+.++++.+  ...|+++.+..     .+..|-++   .+++||..
T Consensus       152 LREG~Av~D~~~PdRI-----ViG~~--~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia  224 (414)
T COG1004         152 LREGSAVYDFLYPDRI-----VIGVR--SERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIA  224 (414)
T ss_pred             hcCcchhhhccCCCeE-----EEccC--ChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    13556554     45443  334566666777654  45566654322     34445444   26899999


Q ss_pred             HHHHc-CCCHHHHHHHH
Q 004972          504 LLVSL-GVDVFRIDSAI  519 (721)
Q Consensus       504 ~l~~~-Gv~~~~ID~a~  519 (721)
                      .+++. |++..+|-.++
T Consensus       225 ~ice~~g~D~~~V~~gI  241 (414)
T COG1004         225 NICEKVGADVKQVAEGI  241 (414)
T ss_pred             HHHHHhCCCHHHHHHHc
Confidence            99988 99999988876

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=99.41  E-value=7.5e-12  Score=132.37  Aligned_cols=185  Identities=10%  Similarity=0.038  Sum_probs=124.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc----ccc
Q 004972          307 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----SEF  382 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~----~~l  382 (721)
                      ||+|||+|.||.+||..|+++|++|++||+++++++...+           .+.             ...++.    +.+
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~-----------~g~-------------~~~~s~~~~~~~~   57 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKE-----------DRT-------------TGVANLRELSQRL   57 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------cCC-------------cccCCHHHHHhhc
Confidence            7999999999999999999999999999999998776432           121             011111    345


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH--HHhcccC-CCCcEEEecCCCCCCCC-CeeEEecC
Q 004972          383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPAHVM-PLLEIVRT  458 (721)
Q Consensus       383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~--~l~~~~~-~~~r~ig~h~~~p~~~~-~lvEiv~~  458 (721)
                      .++|+||.|||.+  ..++++.++.+.++++.+|++.+++.+.+  ++.+.+. ...+|+..+....+... ...-++.+
T Consensus        58 ~~~dvIi~~vp~~--~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~~g  135 (298)
T TIGR00872        58 SAPRVVWVMVPHG--IVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFMIG  135 (298)
T ss_pred             CCCCEEEEEcCch--HHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeeeeC
Confidence            6799999999954  67788899999998888888766654333  3333332 22344444433221100 01223333


Q ss_pred             CCCCHHHHHHHHHHHHHcCC---eeEEEcCCC-c----hhhhhhhhHH---HHHHHHHHHc-C--CCHHHHHHHH
Q 004972          459 ERTSAQVILDLMTVGKIIKK---VPVVVGNCT-G----FAVNRAFFPY---SQSARLLVSL-G--VDVFRIDSAI  519 (721)
Q Consensus       459 ~~t~~e~~~~~~~l~~~lG~---~~v~v~d~~-g----fi~nRl~~~~---~~Ea~~l~~~-G--v~~~~ID~a~  519 (721)
                        .+++.++.++++++.++.   ..+++++.. |    .+.|-+....   +.|++.+++. |  ++++++-.++
T Consensus       136 --G~~~~~~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~  208 (298)
T TIGR00872       136 --GDGEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVW  208 (298)
T ss_pred             --CCHHHHHHHHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHH
Confidence              279999999999999996   467887632 1    2334444433   3599999987 4  5999999988

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.40  E-value=2.6e-12  Score=135.97  Aligned_cols=182  Identities=17%  Similarity=0.118  Sum_probs=121.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC--
Q 004972          307 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK--  383 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~--  383 (721)
                      ||+|||+|.||.+||..|++.|++|++||+++++.+...           +.|             .....+. +.++  
T Consensus         2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~-----------~~g-------------~~~~~s~~~~~~~~   57 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAG-----------KLG-------------ITARHSLEELVSKL   57 (299)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-----------HCC-------------CeecCCHHHHHHhC
Confidence            799999999999999999999999999999998766532           111             2223333 2233  


Q ss_pred             -CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH--HHHhcccCCCCcEEEecCCCCCCCCCe------eE
Q 004972          384 -DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTSSQDRIIGAHFFSPAHVMPL------LE  454 (721)
Q Consensus       384 -~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i--~~l~~~~~~~~r~ig~h~~~p~~~~~l------vE  454 (721)
                       ++|+||.|+|.+. ..+.++.++.+.++++.++++.+++.+.  .++.+.+...    |.+|.+.|-.+..      .-
T Consensus        58 ~~advVi~~vp~~~-~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~----g~~~vdapV~G~~~~a~~g~~  132 (299)
T PRK12490         58 EAPRTIWVMVPAGE-VTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAER----GIHYVDCGTSGGVWGLRNGYC  132 (299)
T ss_pred             CCCCEEEEEecCch-HHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHc----CCeEEeCCCCCCHHHHhcCCe
Confidence             3799999999554 4456667787778888888765443332  2444433211    3455442222111      11


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCC---eeEEEcCCCc-----hhhhhh-hhHH---HHHHHHHHHc-C--CCHHHHHHHH
Q 004972          455 IVRTERTSAQVILDLMTVGKIIKK---VPVVVGNCTG-----FAVNRA-FFPY---SQSARLLVSL-G--VDVFRIDSAI  519 (721)
Q Consensus       455 iv~~~~t~~e~~~~~~~l~~~lG~---~~v~v~d~~g-----fi~nRl-~~~~---~~Ea~~l~~~-G--v~~~~ID~a~  519 (721)
                      ++.+  .+++++++++++++.+|.   ..+++++ +|     -++|++ ....   +.|++.+.++ |  ++++++-.++
T Consensus       133 ~~~g--G~~~~~~~~~~~l~~~~~~~~~~~~~G~-~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~  209 (299)
T PRK12490        133 LMVG--GDKEIYDRLEPVFKALAPEGPGYVHAGP-VGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLW  209 (299)
T ss_pred             EEec--CCHHHHHHHHHHHHHhcCcCCcEEEECC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHH
Confidence            3322  278999999999999997   7888887 34     233443 3332   4599999987 7  8999988887


Q ss_pred             H
Q 004972          520 R  520 (721)
Q Consensus       520 ~  520 (721)
                      .
T Consensus       210 ~  210 (299)
T PRK12490        210 R  210 (299)
T ss_pred             c
Confidence            3

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.40  E-value=3.3e-12  Score=135.37  Aligned_cols=182  Identities=16%  Similarity=0.122  Sum_probs=122.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC--
Q 004972          307 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK--  383 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~--  383 (721)
                      ||+|||+|.||.+||..|+++|++|++||+++++.+...           +.|             ....++. +.++  
T Consensus         2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~-----------~~g-------------~~~~~~~~e~~~~~   57 (301)
T PRK09599          2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALA-----------EEG-------------ATGADSLEELVAKL   57 (301)
T ss_pred             EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHH-----------HCC-------------CeecCCHHHHHhhc
Confidence            799999999999999999999999999999998876542           112             2223333 2233  


Q ss_pred             -CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH--HHhcccCCCCcEEEecCCCCCCCCC------eeE
Q 004972          384 -DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFSPAHVMP------LLE  454 (721)
Q Consensus       384 -~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~--~l~~~~~~~~r~ig~h~~~p~~~~~------lvE  454 (721)
                       ++|+||.++|.+.. ..+++..+.+.++++.++++.+++.+.+  ++.+.+...    |.+|.+.|-.+.      ...
T Consensus        58 ~~~dvvi~~v~~~~~-~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~----g~~~~dapvsG~~~~a~~g~~  132 (301)
T PRK09599         58 PAPRVVWLMVPAGEI-TDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEK----GIHFVDVGTSGGVWGLERGYC  132 (301)
T ss_pred             CCCCEEEEEecCCcH-HHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHc----CCEEEeCCCCcCHHHHhcCCe
Confidence             47999999995534 4556677888888888887655544422  333333211    445543332211      112


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCC----eeEEEcCCCc-----hhhhh-hhhHH---HHHHHHHHH---cCCCHHHHHHH
Q 004972          455 IVRTERTSAQVILDLMTVGKIIKK----VPVVVGNCTG-----FAVNR-AFFPY---SQSARLLVS---LGVDVFRIDSA  518 (721)
Q Consensus       455 iv~~~~t~~e~~~~~~~l~~~lG~----~~v~v~d~~g-----fi~nR-l~~~~---~~Ea~~l~~---~Gv~~~~ID~a  518 (721)
                      ++.+  .++++++.++++++.+++    .++++++. |     -++|+ +....   +.|++.+.+   .|++++++-.+
T Consensus       133 ~~~g--G~~~~~~~~~~~l~~~~~~~~~~~~~~G~~-G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~  209 (301)
T PRK09599        133 LMIG--GDKEAVERLEPIFKALAPRAEDGYLHAGPV-GAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEV  209 (301)
T ss_pred             EEec--CCHHHHHHHHHHHHHHcccccCCeEeECCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence            3333  379999999999999999    78899873 4     13333 43333   459999987   47899999999


Q ss_pred             HH
Q 004972          519 IR  520 (721)
Q Consensus       519 ~~  520 (721)
                      +.
T Consensus       210 ~~  211 (301)
T PRK09599        210 WR  211 (301)
T ss_pred             Hh
Confidence            84

>PLN02256 arogenate dehydrogenase

Probab=99.39  E-value=5.3e-12  Score=132.94  Aligned_cols=153  Identities=11%  Similarity=0.021  Sum_probs=112.9

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc-
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF-  382 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l-  382 (721)
                      .+||+|||+|.||+++|..+.+.|++|++||+++.. +.+.           +.|             +...++. +.+ 
T Consensus        36 ~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~-----------~~g-------------v~~~~~~~e~~~   90 (304)
T PLN02256         36 KLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAA-----------ELG-------------VSFFRDPDDFCE   90 (304)
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHH-----------HcC-------------CeeeCCHHHHhh
Confidence            468999999999999999999999999999998632 2110           111             1223333 233 


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHH-HhhCCCCeEEEecCCC--CCHHHHhcccCCCCcEEEecCCCCCCCCCe------e
Q 004972          383 KDVDMVIEAVIESVPLKQKIFSEL-EKACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFSPAHVMPL------L  453 (721)
Q Consensus       383 ~~aDlVIeavpe~~~~k~~v~~~l-~~~~~~~~ii~s~ts~--~~i~~l~~~~~~~~r~ig~h~~~p~~~~~l------v  453 (721)
                      .++|+||+|+|  .....+++.++ ...++++++|++.+|+  .++..+...++...+|++.||+.++.....      +
T Consensus        91 ~~aDvVilavp--~~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~~  168 (304)
T PLN02256         91 EHPDVVLLCTS--ILSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLPF  168 (304)
T ss_pred             CCCCEEEEecC--HHHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCCccccCCCeE
Confidence            46999999999  66778888888 5678899999888874  556666666655557999999887764311      1


Q ss_pred             EEecC----CCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004972          454 EIVRT----ERTSAQVILDLMTVGKIIKKVPVVVG  484 (721)
Q Consensus       454 Eiv~~----~~t~~e~~~~~~~l~~~lG~~~v~v~  484 (721)
                      -+.+.    +.++++.++.++++++.+|.+++.+.
T Consensus       169 ~~~~~~i~~~~~~~~~~~~l~~l~~~lGa~v~~~~  203 (304)
T PLN02256        169 VYDKVRIGDEGEREARCERFLDIFEEEGCRMVEMS  203 (304)
T ss_pred             EEecceecCCCCCHHHHHHHHHHHHHCCCEEEEeC
Confidence            11221    56788999999999999999999983

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=99.39  E-value=8e-12  Score=130.05  Aligned_cols=203  Identities=17%  Similarity=0.175  Sum_probs=137.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHH---HHHhhcCceeccCcccc
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDK---ANNALKMLKGVLDYSEF  382 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~i~~~~~~~~l  382 (721)
                      .+|+|||+|.+|.++|..++++|++|+.+|+++.+++........     ..  ..+.++   .....++++.|++.+.+
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~-----i~--e~~~~~~v~~~v~~g~lraTtd~~~l   82 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESY-----IE--EPDLDEVVKEAVESGKLRATTDPEEL   82 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcce-----ee--cCcHHHHHHHHHhcCCceEecChhhc
Confidence            689999999999999999999999999999999998875421000     00  001111   11223578899999999


Q ss_pred             CCCCEEEEcccC--------ChHHHHHHHHHHHhhCCCCeEEEecCCCCCH--HHHhcc-------cCCCCcEEEecCCC
Q 004972          383 KDVDMVIEAVIE--------SVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEK-------TSSQDRIIGAHFFS  445 (721)
Q Consensus       383 ~~aDlVIeavpe--------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i--~~l~~~-------~~~~~r~ig~h~~~  445 (721)
                      +.||++|+|||.        |+....+..+.|.++++++.+++.-+++.|-  +++..-       +..+..|.-.  +.
T Consensus        83 ~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~la--ys  160 (436)
T COG0677          83 KECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLA--YS  160 (436)
T ss_pred             ccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEe--eC
Confidence            999999999985        6667788888999999999988754443332  232221       2222222222  24


Q ss_pred             CCCCCCe---eE------EecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCC-----chhhh---hhhhHHHHHHHHHHHc
Q 004972          446 PAHVMPL---LE------IVRTERTSAQVILDLMTVGKIIKKVPVVVGNCT-----GFAVN---RAFFPYSQSARLLVSL  508 (721)
Q Consensus       446 p~~~~~l---vE------iv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~-----gfi~n---Rl~~~~~~Ea~~l~~~  508 (721)
                      |-+.+|.   .|      |+.|  .+++..+.+..|++.+-+..+.+.+..     ...-|   -+-.++.||-..++++
T Consensus       161 PERv~PG~~~~el~~~~kVIgG--~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali~~~  238 (436)
T COG0677         161 PERVLPGNVLKELVNNPKVIGG--VTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELALICNA  238 (436)
T ss_pred             ccccCCCchhhhhhcCCceeec--CCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            4444433   23      3444  489999999999999877766665422     11112   2357889998888877


Q ss_pred             -CCCHHHHHHHH
Q 004972          509 -GVDVFRIDSAI  519 (721)
Q Consensus       509 -Gv~~~~ID~a~  519 (721)
                       |++..++-.+.
T Consensus       239 ~GIdvwevIeaA  250 (436)
T COG0677         239 MGIDVWEVIEAA  250 (436)
T ss_pred             hCCcHHHHHHHh
Confidence             99887776666

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=99.39  E-value=6.7e-13  Score=155.18  Aligned_cols=92  Identities=15%  Similarity=0.195  Sum_probs=84.7

Q ss_pred             cChHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCCCC--C
Q 004972          615 VTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFF--K  692 (721)
Q Consensus       615 ~~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~--~  692 (721)
                      -++++|.||++.++++||++++++| + ++++||.++..++|||+   |||+++|.+|+|..+++++.+.+.+++++  .
T Consensus       493 d~pGfi~NRl~~~~~~ea~~l~~eG-~-~~~~ID~a~~~~~G~p~---GPf~l~D~~Gld~~~~i~~~~~~~~~~~~~~~  567 (714)
T TIGR02437       493 DCPGFFVNRVLFPYFGGFSKLLRDG-A-DFVRIDKVMEKQFGWPM---GPAYLLDVVGIDTGHHAQAVMAEGFPDRMGKD  567 (714)
T ss_pred             CcccchHHHHHHHHHHHHHHHHHCC-C-CHHHHHHHHHhcCCCcc---CHHHHHHhhhHHHHHHHHHHHHHhcCcccccc
Confidence            4689999999999999999999999 6 89999999999999998   99999999999999999999998888754  4


Q ss_pred             CCHHHHHHH-------HcCCCCcCCC
Q 004972          693 PSRFLEERA-------TKGIPLSAPV  711 (721)
Q Consensus       693 p~~~l~~~~-------~~g~~f~~~~  711 (721)
                      |++++++|+       |+|+|||+|+
T Consensus       568 ~~~~l~~~v~~G~lG~K~g~GfY~y~  593 (714)
T TIGR02437       568 GRDAIDALFEAKRLGQKNGKGFYAYE  593 (714)
T ss_pred             hhHHHHHHHHCCCCcccCCCEEEecc
Confidence            578999999       7899999994

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease

Probab=99.39  E-value=1.2e-12  Score=125.52  Aligned_cols=132  Identities=25%  Similarity=0.285  Sum_probs=104.9

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEECC
Q 004972           28 LAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEG  107 (721)
Q Consensus        28 l~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav~G  107 (721)
                      ++..+.++|.+.++.++.|+.+++|+|..    .|.|+|+...                ..+. +.+..++||+|+.++|
T Consensus         8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~----~s~Gg~~~~~----------------~~i~-~~l~~~~kpvva~~~g   66 (161)
T cd00394           8 IEDVSADQLAAQIRFAEADNSVKAIVLEV----NTPGGRVDAG----------------MNIV-DALQASRKPVIAYVGG   66 (161)
T ss_pred             EccchHHHHHHHHHHHHhCCCCceEEEEE----ECCCcCHHHH----------------HHHH-HHHHHhCCCEEEEECC
Confidence            55678999999999999999999999976    4677765432                2333 5577889999999999


Q ss_pred             cccccchHhhhhcCEEEeeCCceEeCcccccCccccc----------------ccc------ccccCHHHHHHHHHcCCC
Q 004972          108 LALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGT----------------QRL------PRLVGLSKAIEMMLLSKS  165 (721)
Q Consensus       108 ~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~~----------------~~l------~r~~G~~~a~~l~ltg~~  165 (721)
                      .|.++|+.|+++||.|++.+++.|++.....+.....                ..+      .|.+......+++..|..
T Consensus        67 ~~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~  146 (161)
T cd00394          67 QAASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLV  146 (161)
T ss_pred             hhHHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcE
Confidence            9999999999999999999999999987765543210                111      223344557788889999


Q ss_pred             cCHHHHHHcCCccEE
Q 004972          166 ITSEEGWKLGLIDAV  180 (721)
Q Consensus       166 ~~a~eA~~~Glv~~v  180 (721)
                      ++|+||++.||||++
T Consensus       147 ~~a~eA~~~GLvD~i  161 (161)
T cd00394         147 LTAQEALEYGLVDAL  161 (161)
T ss_pred             EcHHHHHHcCCcCcC
Confidence            999999999999975

Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=99.38  E-value=4.7e-12  Score=137.85  Aligned_cols=197  Identities=16%  Similarity=0.161  Sum_probs=120.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCCC
Q 004972          307 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV  385 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~a  385 (721)
                      ||+|||+|.||.++|..++. ||+|++||+++++++.+.+......+..+++      .......+++.+++. +.+++|
T Consensus         2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~------~l~~~~~~l~~t~~~~~~~~~a   74 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQ------FLQSDKIHFNATLDKNEAYRDA   74 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHH------HHHhCCCcEEEecchhhhhcCC
Confidence            79999999999999988885 9999999999999988754321111111110      000112345556655 557999


Q ss_pred             CEEEEcccCCh---------HHHHHHHHHHHhhCCCCeEEEecCCCCCHH---HHhcccCCCCcEEEecCCCCCCCCCee
Q 004972          386 DMVIEAVIESV---------PLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHVMPLL  453 (721)
Q Consensus       386 DlVIeavpe~~---------~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~---~l~~~~~~~~r~ig~h~~~p~~~~~lv  453 (721)
                      |+||+|||++.         ....++++++.+ ++++.+++. .||+++.   ++...+.  +.  ++.| +|....+.-
T Consensus        75 d~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~-~STv~pgtt~~l~~~~~--~~--~v~~-~PE~l~~G~  147 (388)
T PRK15057         75 DYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVI-KSTVPVGFTAAMHKKYR--TE--NIIF-SPEFLREGK  147 (388)
T ss_pred             CEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEE-eeecCCchHHHHHHHhh--cC--cEEE-CcccccCCc
Confidence            99999999864         344566677877 577777754 3444433   3332221  11  2222 343322221


Q ss_pred             ---------EEecCCCCCHHHHHHHHHHHHH--cCCeeE-EEcCC-----Cchhhhhh---hhHHHHHHHHHHHc-CCCH
Q 004972          454 ---------EIVRTERTSAQVILDLMTVGKI--IKKVPV-VVGNC-----TGFAVNRA---FFPYSQSARLLVSL-GVDV  512 (721)
Q Consensus       454 ---------Eiv~~~~t~~e~~~~~~~l~~~--lG~~~v-~v~d~-----~gfi~nRl---~~~~~~Ea~~l~~~-Gv~~  512 (721)
                               -++.|.  +++..+.+.+++..  ++..+. ++++.     ..++.|-+   ..+++||+..+++. |+|+
T Consensus       148 a~~d~~~p~rvv~G~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~GiD~  225 (388)
T PRK15057        148 ALYDNLHPSRIVIGE--RSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNT  225 (388)
T ss_pred             ccccccCCCEEEEEc--CcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCH
Confidence                     133332  34556777777754  554333 45432     22344443   25678999999988 9999


Q ss_pred             HHHHHHH
Q 004972          513 FRIDSAI  519 (721)
Q Consensus       513 ~~ID~a~  519 (721)
                      .++-.++
T Consensus       226 ~eV~~a~  232 (388)
T PRK15057        226 RQIIEGV  232 (388)
T ss_pred             HHHHHHh
Confidence            9999988

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=99.37  E-value=2.8e-11  Score=129.25  Aligned_cols=205  Identities=16%  Similarity=0.062  Sum_probs=135.2

Q ss_pred             CcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCCCCEEEEcccC
Q 004972          316 MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVDMVIEAVIE  394 (721)
Q Consensus       316 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~aDlVIeavpe  394 (721)
                      =|.+||..|+++|++|++||++++.++...      .+...+.|             ++.+++. +.+++||+||+|+|.
T Consensus        31 gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~------~~~l~~~G-------------i~~asd~~eaa~~ADvVIlaVP~   91 (342)
T PRK12557         31 GGSRMAIEFAEAGHDVVLAEPNRSILSEEL------WKKVEDAG-------------VKVVSDDAEAAKHGEIHILFTPF   91 (342)
T ss_pred             CHHHHHHHHHhCCCeEEEEECCHHHhhHHH------HHHHHHCC-------------CEEeCCHHHHHhCCCEEEEECCC
Confidence            489999999999999999999998654311      01111222             4444454 667899999999995


Q ss_pred             ChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHH----HhcccCCCCcEEEecCCCCCCC----CCeeEEecCC------C
Q 004972          395 SVPLKQKIFSELEKACPPHCILATNTSTIDLNI----VGEKTSSQDRIIGAHFFSPAHV----MPLLEIVRTE------R  460 (721)
Q Consensus       395 ~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~----l~~~~~~~~r~ig~h~~~p~~~----~~lvEiv~~~------~  460 (721)
                      .. ..++++..+.+.++++++|++ +|+.+...    +...+..+.+.+|.||++|...    ...++++.+.      .
T Consensus        92 ~~-~v~~Vl~~L~~~L~~g~IVId-~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae~g~l~Vm~gg~t~~~~~  169 (342)
T PRK12557         92 GK-KTVEIAKNILPHLPENAVICN-TCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPGTPQHGHYVIAGKTTNGTEL  169 (342)
T ss_pred             cH-HHHHHHHHHHhhCCCCCEEEE-ecCCCHHHHHHHHHHHhcccccccCeeecCCccccccccchheEEeCCCcccccC
Confidence            44 467788889999999988875 44444443    3344444445677877766543    2235566544      2


Q ss_pred             CCHHHHHHHHHHHHHcCCeeEEEcCCCchh---hhhhhhHH----HHHHHHHHHc-CCCHHHHHHHH-HhcCCCccHHHH
Q 004972          461 TSAQVILDLMTVGKIIKKVPVVVGNCTGFA---VNRAFFPY----SQSARLLVSL-GVDVFRIDSAI-RSFGLPIGPFQL  531 (721)
Q Consensus       461 t~~e~~~~~~~l~~~lG~~~v~v~d~~gfi---~nRl~~~~----~~Ea~~l~~~-Gv~~~~ID~a~-~~~G~p~Gpf~~  531 (721)
                      .+++.+++++++++.+|++++++++..|-.   .|.++.+.    ..|++.+.+. |.+|.+.-.-+ ...  -.|--.+
T Consensus       170 ~~~e~~e~v~~LL~a~G~~v~~~~~g~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~~~~~~~--~~~~a~l  247 (342)
T PRK12557        170 ATEEQIEKCVELAESIGKEPYVVPADVVSAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKEMIEKQILMT--LQTMASL  247 (342)
T ss_pred             CCHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH--HHHHHHH
Confidence            389999999999999999998887533322   34444443    3488888877 77776654443 221  0356666


Q ss_pred             HHhhchHHHHHH
Q 004972          532 LDLAGYGVAAAT  543 (721)
Q Consensus       532 ~D~~Gld~~~~~  543 (721)
                      +-..|+|...+.
T Consensus       248 ~~~~~~~~~~~~  259 (342)
T PRK12557        248 VETSGVDGLLKA  259 (342)
T ss_pred             HHHhChHHHHHh
Confidence            667777765553

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.37  E-value=2e-11  Score=127.60  Aligned_cols=153  Identities=14%  Similarity=0.047  Sum_probs=122.5

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCC----CceEEEeCCHHH-HHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNN----IYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  379 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G----~~V~l~d~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  379 (721)
                      |+||+|||+|.||.+++..|.++|    ++|++|+++++. .+...           ..           ...+..+++.
T Consensus         1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~-----------~~-----------~~~~~~~~~~   58 (277)
T PRK06928          1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLY-----------DK-----------YPTVELADNE   58 (277)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHH-----------HH-----------cCCeEEeCCH
Confidence            468999999999999999999998    789999987542 22211           00           0112233444


Q ss_pred             -cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEec-
Q 004972          380 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVR-  457 (721)
Q Consensus       380 -~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~-  457 (721)
                       +.+.++|+||+|+|  ++...+++.++.++++++++|+|...++++.++.+.++. .+++.+.|+.|...+..+..+. 
T Consensus        59 ~e~~~~aDvVilavp--p~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~-~~vvR~MPN~~~~~g~g~t~~~~  135 (277)
T PRK06928         59 AEIFTKCDHSFICVP--PLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPG-LQVSRLIPSLTSAVGVGTSLVAH  135 (277)
T ss_pred             HHHHhhCCEEEEecC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCC-CCEEEEeCccHHHHhhhcEEEec
Confidence             45789999999999  777889999998888888888899999999999987753 4899999999998888888774 


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCeeEE
Q 004972          458 TERTSAQVILDLMTVGKIIKKVPVV  482 (721)
Q Consensus       458 ~~~t~~e~~~~~~~l~~~lG~~~v~  482 (721)
                      ++..+++..+.+..++..+|+...+
T Consensus       136 ~~~~~~~~~~~v~~l~~~~G~~~~v  160 (277)
T PRK06928        136 AETVNEANKSRLEETLSHFSHVMTI  160 (277)
T ss_pred             CCCCCHHHHHHHHHHHHhCCCEEEE
Confidence            6677899999999999999988754

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=99.36  E-value=3.4e-12  Score=145.63  Aligned_cols=167  Identities=22%  Similarity=0.255  Sum_probs=126.4

Q ss_pred             cCcEEEEEeCCC--C-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHH
Q 004972           12 NDGVAIITLINP--P-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVE   88 (721)
Q Consensus        12 ~~~v~~i~l~~p--~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~   88 (721)
                      +++|++|+++.+  + .|..+....+.+.+.++.+..|++|++|||+-.    |.|++....             ....+
T Consensus       307 ~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrin----SpGGs~~as-------------e~i~~  369 (584)
T TIGR00705       307 QDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRIN----SPGGSVFAS-------------EIIRR  369 (584)
T ss_pred             CCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEec----CCCCCHHHH-------------HHHHH
Confidence            578999999877  2 344444456788889999999999999999853    222221110             01112


Q ss_pred             HHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceE------eCcc------cccCcccc---cccccc----
Q 004972           89 LVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL------GLPE------LTLGVIPG---TQRLPR----  149 (721)
Q Consensus        89 ~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~------~~pe------~~~Gl~P~---~~~l~r----  149 (721)
                      .+ ..+...+|||||.++|.|.+||+.++++||.++|++.+.+      +.+.      .++|+.|.   +..+.+    
T Consensus       370 ~i-~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~  448 (584)
T TIGR00705       370 EL-ARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSLL  448 (584)
T ss_pred             HH-HHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCCC
Confidence            33 3366778999999999999999999999999999999987      5553      57898886   444443    


Q ss_pred             ------------------------ccCHHH-----HHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhc
Q 004972          150 ------------------------LVGLSK-----AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR  200 (721)
Q Consensus       150 ------------------------~~G~~~-----a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~  200 (721)
                                              .++..+     +.+.+.+|+.+++++|+++||||++.   .+ ++|.+.|.+++..
T Consensus       449 ~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig---~~-~~Ai~~a~~la~~  524 (584)
T TIGR00705       449 RPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALG---GL-DEAVAKAAKLAHC  524 (584)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCC---CH-HHHHHHHHHHcCC
Confidence                                    566666     78899999999999999999999994   33 7778888888887

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=99.36  E-value=3.1e-11  Score=122.88  Aligned_cols=182  Identities=15%  Similarity=0.135  Sum_probs=142.8

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCC----CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNN----IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  379 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G----~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-  379 (721)
                      ++||+|||+|+||.+|+..|.++|    .+|++.+++++..+...++                      ++... +++. 
T Consensus         1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~----------------------~g~~~-~~~~~   57 (266)
T COG0345           1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAE----------------------YGVVT-TTDNQ   57 (266)
T ss_pred             CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHH----------------------cCCcc-cCcHH
Confidence            368999999999999999999999    5899999999987643211                      11222 3343 


Q ss_pred             cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEec-C
Q 004972          380 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVR-T  458 (721)
Q Consensus       380 ~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~-~  458 (721)
                      +.+.++|+||+||.  ++...+++.++.+ ..++.+|+|...+++++.+...++ ..+++...|+.|..++..+..+. +
T Consensus        58 ~~~~~advv~LavK--Pq~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~~l~-~~~vvR~MPNt~a~vg~g~t~i~~~  133 (266)
T COG0345          58 EAVEEADVVFLAVK--PQDLEEVLSKLKP-LTKDKLVISIAAGVSIETLERLLG-GLRVVRVMPNTPALVGAGVTAISAN  133 (266)
T ss_pred             HHHhhCCEEEEEeC--hHhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHHHcC-CCceEEeCCChHHHHcCcceeeecC
Confidence            66788999999997  8888899999988 778899999999999999999998 77999999999999998888775 5


Q ss_pred             CCCCHHHHHHHHHHHHHcCCeeEEE-----------cCCCchhhhhhhhHHHHHHHH--HHHcCCCHHHHHHHH
Q 004972          459 ERTSAQVILDLMTVGKIIKKVPVVV-----------GNCTGFAVNRAFFPYSQSARL--LVSLGVDVFRIDSAI  519 (721)
Q Consensus       459 ~~t~~e~~~~~~~l~~~lG~~~v~v-----------~d~~gfi~nRl~~~~~~Ea~~--l~~~Gv~~~~ID~a~  519 (721)
                      ...+++..+.+..+++.+|+...+-           +..|.|+      .++.|++.  -+..|++.++.-+..
T Consensus       134 ~~~~~~~~~~v~~l~~~~G~v~~v~E~~~da~TaisGSgPAyv------~~~iEal~~agv~~Gl~~~~A~~l~  201 (266)
T COG0345         134 ANVSEEDKAFVEALLSAVGKVVEVEESLMDAVTALSGSGPAYV------FLFIEALADAGVRLGLPREEARELA  201 (266)
T ss_pred             ccCCHHHHHHHHHHHHhcCCeEEechHHhhHHHHHhcCCHHHH------HHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            7789999999999999999887663           2244332      23445443  334577766655554

>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad

Probab=99.34  E-value=5.8e-12  Score=126.45  Aligned_cols=152  Identities=26%  Similarity=0.295  Sum_probs=106.1

Q ss_pred             cEEEEEeCC-----CC-CCC-CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHH
Q 004972           14 GVAIITLIN-----PP-VNA-LAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVS   86 (721)
Q Consensus        14 ~v~~i~l~~-----p~-~Na-l~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~   86 (721)
                      +|++|.++.     +. .|+ ++..++.+|.++++.+++|+++++|||+.    +|.|+++....               
T Consensus         1 ~v~vi~~~g~i~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~----~s~gg~~~~~~---------------   61 (214)
T cd07022           1 GVAVIPVHGVLVPRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDI----DSPGGEVAGVF---------------   61 (214)
T ss_pred             CEEEEEEEEEEeCCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEE----eCCCCcHHHHH---------------
Confidence            355565543     32 354 45789999999999999999999999975    46666654321               


Q ss_pred             HHHHHHHHhhC--CCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccc------------cCcccc---------
Q 004972           87 VELVVNLIEDC--KKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGVIPG---------  143 (721)
Q Consensus        87 ~~~~~~~l~~~--~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~------------~Gl~P~---------  143 (721)
                       .+. +.+..+  +|||||+++|.|.|+|+.|+++||++++++++.|+...+.            +|+-+.         
T Consensus        62 -~l~-~~l~~~~~~KpViA~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~  139 (214)
T cd07022          62 -ELA-DAIRAARAGKPIVAFVNGLAASAAYWIASAADRIVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKV  139 (214)
T ss_pred             -HHH-HHHHHHhcCCCEEEEECCchhhHHHHHHhcCCEEEEcCCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCcc
Confidence             111 233344  5999999999999999999999999999999998654322            343221         


Q ss_pred             --cc---------------------------ccccccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHH
Q 004972          144 --TQ---------------------------RLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK  188 (721)
Q Consensus       144 --~~---------------------------~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~  188 (721)
                        ..                           .-.|-+......+++  |..+++++|++.||||++...+++..
T Consensus       140 ~~~~~~~~s~~~re~~~~~l~~~~~~f~~~V~~~R~~~~~~~~~~~--~~~~~~~~Al~~gLvD~i~~~~~~~~  211 (214)
T cd07022         140 DGNPDEPLSDEARARLQAEVDALYAMFVAAVARNRGLSAAAVRATE--GGVFRGQEAVAAGLADAVGTLDDALA  211 (214)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhh--cCeeeHHHHHHcCCCcccCCHHHHHH
Confidence              00                           001222333344444  99999999999999999987666543

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=99.32  E-value=1.4e-11  Score=135.80  Aligned_cols=204  Identities=16%  Similarity=0.140  Sum_probs=127.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  385 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  385 (721)
                      +||+|||+|.||.++|..|+. |++|++||+++++++...+.....    .+.   ...+... .+++.++++.+.+++|
T Consensus         7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~----~e~---~~~~l~~-~g~l~~t~~~~~~~~a   77 (425)
T PRK15182          7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVN----LET---TEEELRE-ARYLKFTSEIEKIKEC   77 (425)
T ss_pred             CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCC----CCC---CHHHHHh-hCCeeEEeCHHHHcCC
Confidence            589999999999999999887 699999999999988754211000    000   0111111 2467788888778999


Q ss_pred             CEEEEcccCCh--------HHHHHHHHHHHhhCCCCeEEEecCCCCCHH---HHh-cccCC------CCcEEEecCCCCC
Q 004972          386 DMVIEAVIESV--------PLKQKIFSELEKACPPHCILATNTSTIDLN---IVG-EKTSS------QDRIIGAHFFSPA  447 (721)
Q Consensus       386 DlVIeavpe~~--------~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~---~l~-~~~~~------~~r~ig~h~~~p~  447 (721)
                      |+||.|||.+.        .......+.|.++++++.+++.. ||+++.   ++. ..+..      -..|.-.  ++|.
T Consensus        78 dvvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~-STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~--~~PE  154 (425)
T PRK15182         78 NFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYE-STVYPGCTEEECVPILARMSGMTFNQDFYVG--YSPE  154 (425)
T ss_pred             CEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEe-cCCCCcchHHHHHHHHHhccCCCcCCCeeEe--eCCC
Confidence            99999999652        33344456788889888877643 333332   121 11111      0111111  2222


Q ss_pred             CCCCe---------eEEecCCCCCHHHHHHHHHHHHHcC-CeeEEEcCCC-c---hhhhhhh----hHHHHHHHHHHHc-
Q 004972          448 HVMPL---------LEIVRTERTSAQVILDLMTVGKIIK-KVPVVVGNCT-G---FAVNRAF----FPYSQSARLLVSL-  508 (721)
Q Consensus       448 ~~~~l---------vEiv~~~~t~~e~~~~~~~l~~~lG-~~~v~v~d~~-g---fi~nRl~----~~~~~Ea~~l~~~-  508 (721)
                      ...+.         --++.|.  +++..+.+.++++.+. ..++++.+.. +   .++|..+    .+++||+..+++. 
T Consensus       155 ~v~~G~a~~~~~~~~riv~G~--~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~~  232 (425)
T PRK15182        155 RINPGDKKHRLTNIKKITSGS--TAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNRL  232 (425)
T ss_pred             cCCCCcccccccCCCeEEECC--CHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            22211         1145553  5788899999999986 3456655411 1   2334432    5678999999988 


Q ss_pred             CCCHHHHHHHH-HhcC
Q 004972          509 GVDVFRIDSAI-RSFG  523 (721)
Q Consensus       509 Gv~~~~ID~a~-~~~G  523 (721)
                      |+|+.++-.++ ....
T Consensus       233 GiD~~~v~~a~~~~~~  248 (425)
T PRK15182        233 NIDTEAVLRAAGSKWN  248 (425)
T ss_pred             CcCHHHHHHHhcCCCC
Confidence            99999998887 4433

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=99.32  E-value=1.4e-11  Score=136.75  Aligned_cols=190  Identities=15%  Similarity=0.100  Sum_probs=125.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc----ccc
Q 004972          307 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----SEF  382 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~----~~l  382 (721)
                      +|+|||+|.||.+||..|+++|++|++||+++++.+...+.        ...|.           .+...++.    +.+
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~--------~~~g~-----------~~~~~~s~~e~v~~l   61 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAE--------HAKGK-----------KIVGAYSIEEFVQSL   61 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhh--------ccCCC-----------CceecCCHHHHHhhc
Confidence            48999999999999999999999999999999987765321        00010           01222222    234


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHH--hcccC-CCCcEEEecCCCCC---CCCCeeEEe
Q 004972          383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV--GEKTS-SQDRIIGAHFFSPA---HVMPLLEIV  456 (721)
Q Consensus       383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l--~~~~~-~~~r~ig~h~~~p~---~~~~lvEiv  456 (721)
                      +.+|+||.|||.+. ...+++.++.++++++.||++.+++.+....  .+.+. ...+|+++.....+   ..++  -++
T Consensus        62 ~~~dvIil~v~~~~-~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~--~im  138 (467)
T TIGR00873        62 ERPRKIMLMVKAGA-PVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGP--SIM  138 (467)
T ss_pred             CCCCEEEEECCCcH-HHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCC--cCC
Confidence            67999999999544 4456778899999999999877665544322  22221 22234433332211   1122  233


Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCee------EEEcCCC-c----hhhhhhhhHH---HHHHHHHHH--cCCCHHHHHHHHH
Q 004972          457 RTERTSAQVILDLMTVGKIIKKVP------VVVGNCT-G----FAVNRAFFPY---SQSARLLVS--LGVDVFRIDSAIR  520 (721)
Q Consensus       457 ~~~~t~~e~~~~~~~l~~~lG~~~------v~v~d~~-g----fi~nRl~~~~---~~Ea~~l~~--~Gv~~~~ID~a~~  520 (721)
                      .|  .++++++.++++++.++..+      .++++.. |    .+-|-+.+++   +.|++.++.  .|++++++-.++.
T Consensus       139 ~G--G~~~a~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~~  216 (467)
T TIGR00873       139 PG--GSAEAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFT  216 (467)
T ss_pred             CC--CCHHHHHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            33  48999999999999999874      6777632 2    2335555444   359999874  4899999988884

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK07680 late competence protein ComER; Validated

Probab=99.31  E-value=7e-11  Score=123.53  Aligned_cols=182  Identities=12%  Similarity=0.076  Sum_probs=126.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCC----ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cc
Q 004972          307 KVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  381 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  381 (721)
                      ||+|||+|.||.+++..|.++|+    +|++||++++..+...+.                      ...+..+.+. +.
T Consensus         2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~----------------------~~g~~~~~~~~~~   59 (273)
T PRK07680          2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKER----------------------YPGIHVAKTIEEV   59 (273)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHH----------------------cCCeEEECCHHHH
Confidence            79999999999999999999984    799999999876543210                      0113334444 45


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEE-ecCCC
Q 004972          382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEI-VRTER  460 (721)
Q Consensus       382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEi-v~~~~  460 (721)
                      +.+||+||.|+|  .....++++++.++++++++|++.++++++..+...+.  .+++..+|..|......+.+ +.+..
T Consensus        60 ~~~aDiVilav~--p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~~--~~~~r~~p~~~~~~~~G~t~~~~g~~  135 (273)
T PRK07680         60 ISQSDLIFICVK--PLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLETLVP--CQVARIIPSITNRALSGASLFTFGSR  135 (273)
T ss_pred             HHhCCEEEEecC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcC--CCEEEECCChHHHHhhccEEEeeCCC
Confidence            789999999998  77778889999888888888888888888888887764  35666676544322233333 45666


Q ss_pred             CCHHHHHHHHHHHHHcCCeeEEEcCC------------CchhhhhhhhHHHHHHHHHHH-cCCCHHHHHHHH
Q 004972          461 TSAQVILDLMTVGKIIKKVPVVVGNC------------TGFAVNRAFFPYSQSARLLVS-LGVDVFRIDSAI  519 (721)
Q Consensus       461 t~~e~~~~~~~l~~~lG~~~v~v~d~------------~gfi~nRl~~~~~~Ea~~l~~-~Gv~~~~ID~a~  519 (721)
                      .+++..+.+.+++..+|. ++.+.+.            |.|+.| ++.++...+   ++ .|+++++..+++
T Consensus       136 ~~~~~~~~~~~ll~~~G~-~~~i~e~~~~~~~~l~gs~pa~~~~-~~~al~~~~---~~~~Gl~~~~a~~~~  202 (273)
T PRK07680        136 CSEEDQQKLERLFSNIST-PLVIEEDITRVSSDIVSCGPAFFSY-LLQRFIDAA---VEETNISKEEATTLA  202 (273)
T ss_pred             CCHHHHHHHHHHHHcCCC-EEEEChHhcchhhhhccchHHHHHH-HHHHHHHHH---HHhcCCCHHHHHHHH
Confidence            788889999999999995 4555432            112222 222233322   34 588888876665

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=99.31  E-value=5.4e-11  Score=127.80  Aligned_cols=197  Identities=17%  Similarity=0.147  Sum_probs=123.5

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  383 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  383 (721)
                      |+||+|||+|.||+.+|..|+++|++|++||++++.++.........   ....+ .      .....+..+++. +.++
T Consensus         1 mmkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~---~~~~~-~------~~~~~~~~~~~~~~~~~   70 (325)
T PRK00094          1 MMKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENP---RYLPG-I------KLPDNLRATTDLAEALA   70 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCccc---ccCCC-C------cCCCCeEEeCCHHHHHh
Confidence            46899999999999999999999999999999998877653210000   00000 0      001134445555 4678


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH-------HHhcccCCCCcEEEecCCCCCC-------C
Q 004972          384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-------IVGEKTSSQDRIIGAHFFSPAH-------V  449 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~-------~l~~~~~~~~r~ig~h~~~p~~-------~  449 (721)
                      +||+||.|+|  ......++.++.+.+++++++++.++++...       .+.+........  .....|..       .
T Consensus        71 ~~D~vi~~v~--~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~--~~~~~P~~~~~~~~g~  146 (325)
T PRK00094         71 DADLILVAVP--SQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPI--AVLSGPSFAKEVARGL  146 (325)
T ss_pred             CCCEEEEeCC--HHHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCce--EEEECccHHHHHHcCC
Confidence            9999999999  4677888899999888899888776555542       222222210011  11112221       1


Q ss_pred             CCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCch----------------------hhhhh---hhHHHHHHHH
Q 004972          450 MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGF----------------------AVNRA---FFPYSQSARL  504 (721)
Q Consensus       450 ~~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~gf----------------------i~nRl---~~~~~~Ea~~  504 (721)
                      ..++. +.+  .+.+.++.+.++++..|..+.+..+..|.                      ..|.+   ....++|++.
T Consensus       147 ~~~~~-~~~--~~~~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~  223 (325)
T PRK00094        147 PTAVV-IAS--TDEELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITR  223 (325)
T ss_pred             CcEEE-EEe--CCHHHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHH
Confidence            11222 222  37889999999999999887776664431                      11222   2333568888


Q ss_pred             HHHc-CCCHHHHHHH
Q 004972          505 LVSL-GVDVFRIDSA  518 (721)
Q Consensus       505 l~~~-Gv~~~~ID~a  518 (721)
                      +++. |++++.+...
T Consensus       224 la~~~G~d~~~~~~~  238 (325)
T PRK00094        224 LGVALGANPETFLGL  238 (325)
T ss_pred             HHHHhCCChhhhhcc
Confidence            7766 8877777554

>PRK08818 prephenate dehydrogenase; Provisional

Probab=99.31  E-value=2.1e-11  Score=130.73  Aligned_cols=137  Identities=13%  Similarity=0.118  Sum_probs=104.6

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHC-CCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc
Q 004972          306 RKVAVIGG-GLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  382 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  382 (721)
                      .+|+|||. |.||+++|..|.+. |++|+.+|++.+.                                   .++. +.+
T Consensus         5 ~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~-----------------------------------~~~~~~~v   49 (370)
T PRK08818          5 PVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPG-----------------------------------SLDPATLL   49 (370)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccc-----------------------------------cCCHHHHh
Confidence            58999999 99999999999864 8999999985211                                   1122 457


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhh---CCCCeEEEecCCCCC--HHHHhcccCCCCcEEEecCCCCCCCC-----Ce
Q 004972          383 KDVDMVIEAVIESVPLKQKIFSELEKA---CPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAHVM-----PL  452 (721)
Q Consensus       383 ~~aDlVIeavpe~~~~k~~v~~~l~~~---~~~~~ii~s~ts~~~--i~~l~~~~~~~~r~ig~h~~~p~~~~-----~l  452 (721)
                      ++||+||.|+|  +....++++++.++   ++++++|++.+|+..  +..+   .....+|+|.||+..+...     ..
T Consensus        50 ~~aDlVilavP--v~~~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~---~~~~~~fVG~HPMaG~E~s~lf~g~~  124 (370)
T PRK08818         50 QRADVLIFSAP--IRHTAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAM---LASQAEVVGLHPMTAPPKSPTLKGRV  124 (370)
T ss_pred             cCCCEEEEeCC--HHHHHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHH---HhcCCCEEeeCCCCCCCCCcccCCCe
Confidence            89999999999  88899999999886   689999998777653  2333   2333479999998776533     33


Q ss_pred             eEEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004972          453 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVG  484 (721)
Q Consensus       453 vEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~  484 (721)
                      +-+++.  ..++.++.+..+++.+|..++.+.
T Consensus       125 ~iltp~--~~~~~~~~v~~l~~~~Ga~v~~~~  154 (370)
T PRK08818        125 MVVCEA--RLQHWSPWVQSLCSALQAECVYAT  154 (370)
T ss_pred             EEEeCC--CchhHHHHHHHHHHHcCCEEEEcC
Confidence            334544  345567899999999999999884

>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.31  E-value=9.2e-12  Score=124.62  Aligned_cols=150  Identities=23%  Similarity=0.287  Sum_probs=109.6

Q ss_pred             EEEEEeCCCCCCCC---CHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHH
Q 004972           15 VAIITLINPPVNAL---AIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVV   91 (721)
Q Consensus        15 v~~i~l~~p~~Nal---~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~   91 (721)
                      |++|.++.+    +   ...++.+|.++++.+++|+++++|||++    +|.|+|+....             ...+.+ 
T Consensus         2 v~vi~i~g~----i~~~~~~~~~~l~~~l~~a~~d~~i~~ivl~~----~s~Gg~~~~~~-------------~i~~~i-   59 (208)
T cd07023           2 IAVIDIEGT----ISDGGGIGADSLIEQLRKAREDDSVKAVVLRI----NSPGGSVVASE-------------EIYREI-   59 (208)
T ss_pred             EEEEEEEEE----EcCCCCCCHHHHHHHHHHHHhCCCCcEEEEEE----ECCCCCHHHHH-------------HHHHHH-
Confidence            567777654    3   3678999999999999999999999998    48899886521             122344 


Q ss_pred             HHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccc------------cCcccccc--------------
Q 004972           92 NLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGVIPGTQ--------------  145 (721)
Q Consensus        92 ~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~------------~Gl~P~~~--------------  145 (721)
                      +.+..++||+||+++|.|.|+|+.|+++||++++++++.|+...+.            +|+-+...              
T Consensus        60 ~~~~~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~  139 (208)
T cd07023          60 RRLRKAKKPVVASMGDVAASGGYYIAAAADKIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRP  139 (208)
T ss_pred             HHHHhcCCcEEEEECCcchhHHHHHHhhCCEEEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCC
Confidence            4577889999999999999999999999999999999998754222            34433100              


Q ss_pred             -------c-----------------cccccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHH
Q 004972          146 -------R-----------------LPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL  187 (721)
Q Consensus       146 -------~-----------------l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~  187 (721)
                             .                 -.|-+.... .+-+..|..+++++|++.||||++...++..
T Consensus       140 ~s~~~~e~~~~~l~~~~~~f~~~Va~~R~~~~~~-~~~~~~~~~~~a~~A~~~gLiD~i~~~~~~~  204 (208)
T cd07023         140 LTEEERAILQALVDDIYDQFVDVVAEGRGMSGER-LDKLADGRVWTGRQALELGLVDELGGLDDAI  204 (208)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHH-HHHhcCCcEEEHHHHHHcCCCcccCCHHHHH
Confidence                   0                 011111122 2335678899999999999999998655543

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad

>PLN02858 fructose-bisphosphate aldolase

Probab=99.31  E-value=2.3e-11  Score=150.59  Aligned_cols=186  Identities=16%  Similarity=0.089  Sum_probs=131.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      +|||+||+|.||.+||.+|+++|++|++||+++++.+...           +.|             ....++. +.+++
T Consensus         5 ~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~-----------~~G-------------a~~~~s~~e~a~~   60 (1378)
T PLN02858          5 GVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFC-----------ELG-------------GHRCDSPAEAAKD   60 (1378)
T ss_pred             CeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HcC-------------CeecCCHHHHHhc
Confidence            5799999999999999999999999999999999877642           222             1223444 66788


Q ss_pred             CCEEEEcccCChHHHHHHH--HHHHhhCCCCeEEEecCCCCCHH---HHhcccCCCCcEEE--ecCCCCC--------CC
Q 004972          385 VDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIG--AHFFSPA--------HV  449 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~--~~l~~~~~~~~ii~s~ts~~~i~---~l~~~~~~~~r~ig--~h~~~p~--------~~  449 (721)
                      ||+||.|+|++..+...++  ..+.+.+.++.+++.. ||+.+.   ++++.+...    |  .+|.+.|        ..
T Consensus        61 advVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iivd~-STi~p~~~~~la~~l~~~----g~~~~~lDaPVsGg~~~A~~  135 (1378)
T PLN02858         61 AAALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVILIR-STILPLQLQKLEKKLTER----KEQIFLVDAYVSKGMSDLLN  135 (1378)
T ss_pred             CCEEEEEcCChHHHHHHHhchhhHHhcCCCcCEEEEC-CCCCHHHHHHHHHHHHhc----CCceEEEEccCcCCHHHHhc
Confidence            9999999998777665554  3566777788888754 444444   344333221    3  4454333        22


Q ss_pred             CCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEE-cCCC-c---hhhhhhhhH----HHHHHHHHHHc-CCCHHHHHHHH
Q 004972          450 MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV-GNCT-G---FAVNRAFFP----YSQSARLLVSL-GVDVFRIDSAI  519 (721)
Q Consensus       450 ~~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v-~d~~-g---fi~nRl~~~----~~~Ea~~l~~~-Gv~~~~ID~a~  519 (721)
                      +.+.-++.|   +++++++++++++.+|+.++++ ++.. |   -++|.++..    .+.||+.+.+. |++++.+-.++
T Consensus       136 G~L~imvGG---~~~~~~~~~p~l~~~g~~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl  212 (1378)
T PLN02858        136 GKLMIIASG---RSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDII  212 (1378)
T ss_pred             CCeEEEEcC---CHHHHHHHHHHHHHhcCceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            334444445   7899999999999999998875 6521 2   345555433    34699999887 99999999988


Q ss_pred             -HhcC
Q 004972          520 -RSFG  523 (721)
Q Consensus       520 -~~~G  523 (721)
                       .+.|
T Consensus       213 ~~s~g  217 (1378)
T PLN02858        213 SNAAG  217 (1378)
T ss_pred             hcCCc
Confidence             5555

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=99.29  E-value=8.3e-11  Score=123.80  Aligned_cols=185  Identities=14%  Similarity=0.054  Sum_probs=128.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  385 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  385 (721)
                      ++|+|||.|.||.++|..|...|++|++++++.+......          .+.|             +...+..+.+++|
T Consensus        18 ktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A----------~~~G-------------~~~~s~~eaa~~A   74 (330)
T PRK05479         18 KKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKA----------EADG-------------FEVLTVAEAAKWA   74 (330)
T ss_pred             CEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHH----------HHCC-------------CeeCCHHHHHhcC
Confidence            6899999999999999999999999999888754422210          0111             2223222668899


Q ss_pred             CEEEEcccCChHHHHHHH-HHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCC-------CCCeeEEe-
Q 004972          386 DMVIEAVIESVPLKQKIF-SELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAH-------VMPLLEIV-  456 (721)
Q Consensus       386 DlVIeavpe~~~~k~~v~-~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~-------~~~lvEiv-  456 (721)
                      |+|+.+||..  ....++ +++.+.++++++| +.++++.+.......+...+++-++|..|.+       .+..+... 
T Consensus        75 DVVvLaVPd~--~~~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~  151 (330)
T PRK05479         75 DVIMILLPDE--VQAEVYEEEIEPNLKEGAAL-AFAHGFNIHFGQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLI  151 (330)
T ss_pred             CEEEEcCCHH--HHHHHHHHHHHhcCCCCCEE-EECCCCChhhceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEE
Confidence            9999999943  336777 7799999999888 7788898887766655556799999999988       55554433 


Q ss_pred             -cCCCCCHHHHHHHHHHHHHcCCeeE-----EEcCCC--chhhhh-----hhhHHHHHHHHHHHc-CCCHHHHH
Q 004972          457 -RTERTSAQVILDLMTVGKIIKKVPV-----VVGNCT--GFAVNR-----AFFPYSQSARLLVSL-GVDVFRID  516 (721)
Q Consensus       457 -~~~~t~~e~~~~~~~l~~~lG~~~v-----~v~d~~--gfi~nR-----l~~~~~~Ea~~l~~~-Gv~~~~ID  516 (721)
                       .+...+.+..+.+..+++.+|..+.     ..++..  -....+     -+..++..++..+.+ |++|+.--
T Consensus       152 av~~d~t~~a~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~gg~~~l~~~~~e~l~eaG~~pe~Ay  225 (330)
T PRK05479        152 AVHQDASGNAKDLALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLTELIKAGFETLVEAGYQPEMAY  225 (330)
T ss_pred             EecCCCCHHHHHHHHHHHHHcCCCccceeeeeecccccccchhhHHHHhhHHHHHHHHHHHHHHHcCCCHHHHH
Confidence             3555678999999999999998875     333221  111111     123345566655544 88777643

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=99.27  E-value=1.6e-10  Score=128.55  Aligned_cols=202  Identities=16%  Similarity=0.196  Sum_probs=130.9

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCC--CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHH-HH-hhcCceeccCc-
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKA-NN-ALKMLKGVLDY-  379 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~-~~~~i~~~~~~-  379 (721)
                      ++||+|||+|.+|..+|..|+++|  ++|+++|+++++++...+....    ..+.+   -++. .. .-.++.+++++ 
T Consensus         1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~----~~e~g---l~ell~~~~~~~l~~t~~~~   73 (473)
T PLN02353          1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLP----IYEPG---LDEVVKQCRGKNLFFSTDVE   73 (473)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCc----cCCCC---HHHHHHHhhcCCEEEEcCHH
Confidence            468999999999999999999985  7899999999998886432100    00111   1111 11 11358889987 


Q ss_pred             cccCCCCEEEEcccCC-------------hHHHHHHHHHHHhhCCCCeEEEecCCCCCHH---HHhcccC----------
Q 004972          380 SEFKDVDMVIEAVIES-------------VPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTS----------  433 (721)
Q Consensus       380 ~~l~~aDlVIeavpe~-------------~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~---~l~~~~~----------  433 (721)
                      +++++||++|.|||..             +.....+.++|.++++++++|+. .|+.++.   .+...+.          
T Consensus        74 ~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~-~STvp~Gtt~~~~~~l~~~~~g~~f~v  152 (473)
T PLN02353         74 KHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVE-KSTVPVKTAEAIEKILTHNSKGINFQI  152 (473)
T ss_pred             HHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEE-eCCCCCChHHHHHHHHHhhCCCCCeEE
Confidence            4689999999999633             34777888999999998887763 3333332   2222111          


Q ss_pred             --CCCcEEEec----CCCCCCCCCeeEEecCCC--CCHHHHHHHHHHHHHcCC-eeEEEcC-----CCchhhhhh---hh
Q 004972          434 --SQDRIIGAH----FFSPAHVMPLLEIVRTER--TSAQVILDLMTVGKIIKK-VPVVVGN-----CTGFAVNRA---FF  496 (721)
Q Consensus       434 --~~~r~ig~h----~~~p~~~~~lvEiv~~~~--t~~e~~~~~~~l~~~lG~-~~v~v~d-----~~gfi~nRl---~~  496 (721)
                        .|+++.-..    |.+|+.+     |+.+..  ..+++.+.+..++..+-+ .++.+.+     ...++.|-.   -.
T Consensus       153 ~~~PErl~~G~a~~d~~~p~ri-----ViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~I  227 (473)
T PLN02353        153 LSNPEFLAEGTAIEDLFKPDRV-----LIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRI  227 (473)
T ss_pred             EECCCccCCCCcccccCCCCEE-----EEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHH
Confidence              122211111    1233332     345432  226688999999998753 4555432     334455544   35


Q ss_pred             HHHHHHHHHHHc-CCCHHHHHHHH
Q 004972          497 PYSQSARLLVSL-GVDVFRIDSAI  519 (721)
Q Consensus       497 ~~~~Ea~~l~~~-Gv~~~~ID~a~  519 (721)
                      +++||...+++. |+|+.+|-.++
T Consensus       228 af~NEla~lce~~giD~~eV~~~~  251 (473)
T PLN02353        228 SSVNAMSALCEATGADVSQVSHAV  251 (473)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHh
Confidence            889999999988 99999999988

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.27  E-value=1.3e-10  Score=120.52  Aligned_cols=179  Identities=11%  Similarity=0.098  Sum_probs=126.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCc---eEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc
Q 004972          307 KVAVIGGGLMGSGIATAHILNNIY---VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  382 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~~G~~---V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  382 (721)
                      ||+|||+|.||.+|+..|.+.|+.   +.+||+++++.+...+.                      ......+++. +.+
T Consensus         2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~----------------------~~~~~~~~~~~~~~   59 (258)
T PRK06476          2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAER----------------------FPKVRIAKDNQAVV   59 (258)
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHH----------------------cCCceEeCCHHHHH
Confidence            799999999999999999999864   58999998876553211                      0112333444 456


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCCC
Q 004972          383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS  462 (721)
Q Consensus       383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t~  462 (721)
                      ++||+||+|+|  ++...+++.++.  ..+++++++...+.++..+...+....+++..||..|......+..+...   
T Consensus        60 ~~aDvVilav~--p~~~~~vl~~l~--~~~~~~vis~~ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~~~~~---  132 (258)
T PRK06476         60 DRSDVVFLAVR--PQIAEEVLRALR--FRPGQTVISVIAATDRAALLEWIGHDVKLVRAIPLPFVAERKGVTAIYPP---  132 (258)
T ss_pred             HhCCEEEEEeC--HHHHHHHHHHhc--cCCCCEEEEECCCCCHHHHHHHhCCCCCEEEECCCChhhhCCCCeEecCC---
Confidence            88999999999  666678877762  45777888888899999999888766678889998777655555555432   


Q ss_pred             HHHHHHHHHHHHHcCCeeEEEcC--CC------chhhhhhhhHHHHHHHHHHHc-CCCHHHHHHHH
Q 004972          463 AQVILDLMTVGKIIKKVPVVVGN--CT------GFAVNRAFFPYSQSARLLVSL-GVDVFRIDSAI  519 (721)
Q Consensus       463 ~e~~~~~~~l~~~lG~~~v~v~d--~~------gfi~nRl~~~~~~Ea~~l~~~-Gv~~~~ID~a~  519 (721)
                         .+.++++++.+|..+++..+  ..      ++..|  ++.++.++....++ |+++++..+++
T Consensus       133 ---~~~~~~l~~~lG~~~~~~~e~~~d~~~a~~s~~a~--~~~~~~~~~~~~~~~Gl~~~~a~~~~  193 (258)
T PRK06476        133 ---DPFVAALFDALGTAVECDSEEEYDLLAAASALMAT--YFGILETATGWLEEQGLKRQKARAYL  193 (258)
T ss_pred             ---HHHHHHHHHhcCCcEEECChHhccceeehhccHHH--HHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence               25789999999988774322  11      12222  12345566655554 99998877776

>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=99.27  E-value=1.2e-11  Score=118.53  Aligned_cols=126  Identities=17%  Similarity=0.284  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEECCccc
Q 004972           31 PIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLAL  110 (721)
Q Consensus        31 ~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~  110 (721)
                      ...+.+.+.++.+..++.+ .+.|.+.|+...+                      ...++ +.|..+++|||++++|.|.
T Consensus        15 ~~~~~~~~~l~~~~~~~~i-~l~inspGG~~~~----------------------~~~i~-~~i~~~~~pvi~~v~g~a~   70 (160)
T cd07016          15 VTAKEFKDALDALGDDSDI-TVRINSPGGDVFA----------------------GLAIY-NALKRHKGKVTVKIDGLAA   70 (160)
T ss_pred             cCHHHHHHHHHhccCCCCE-EEEEECCCCCHHH----------------------HHHHH-HHHHhcCCCEEEEEcchHH
Confidence            4667888888888876333 3444554432211                      12444 6678899999999999999


Q ss_pred             ccchHhhhhcCEEEeeCCceEeCcccccCcccc---c---------------cccccccC--HHHHHHHHHcCCCcCHHH
Q 004972          111 GGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---T---------------QRLPRLVG--LSKAIEMMLLSKSITSEE  170 (721)
Q Consensus       111 GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~---------------~~l~r~~G--~~~a~~l~ltg~~~~a~e  170 (721)
                      |+|+.++++||+|+++++++|+++....+..+.   .               ..+.+..|  .....+++.++..++|+|
T Consensus        71 s~g~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~e  150 (160)
T cd07016          71 SAASVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTAQE  150 (160)
T ss_pred             hHHHHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHH
Confidence            999999999999999999999998776665442   1               12667778  677888888888999999


Q ss_pred             HHHcCCccEE
Q 004972          171 GWKLGLIDAV  180 (721)
Q Consensus       171 A~~~Glv~~v  180 (721)
                      |+++||||+|
T Consensus       151 A~~~GliD~v  160 (160)
T cd07016         151 AVELGFADEI  160 (160)
T ss_pred             HHHcCCCCcC
Confidence            9999999975

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=99.26  E-value=8.7e-13  Score=145.64  Aligned_cols=160  Identities=16%  Similarity=0.145  Sum_probs=120.0

Q ss_pred             eEEEEcCCCCcHHHHH--HH----HHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-
Q 004972          307 KVAVIGGGLMGSGIAT--AH----ILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  379 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~--~l----a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-  379 (721)
                      ||+|||+|.||.+.+.  .+    +..|++|++||++++.++.....+++.+...    ..        ..++..++|+ 
T Consensus         2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~----~~--------~~~I~~ttD~~   69 (423)
T cd05297           2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEEL----GA--------PLKIEATTDRR   69 (423)
T ss_pred             eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhc----CC--------CeEEEEeCCHH
Confidence            7999999999998766  23    4568899999999999888666554433321    11        1367778886 


Q ss_pred             cccCCCCEEEEccc----------CChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCC--CCcEEEecCCCCC
Q 004972          380 SEFKDVDMVIEAVI----------ESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSS--QDRIIGAHFFSPA  447 (721)
Q Consensus       380 ~~l~~aDlVIeavp----------e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~--~~r~ig~h~~~p~  447 (721)
                      +++++||+||++++          |+...|..+++++.+.+++++++.+++|...+.+++..+..  | +++.+||.||+
T Consensus        70 eal~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p-~a~~i~~tNPv  148 (423)
T cd05297          70 EALDGADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCP-DAWLLNYANPM  148 (423)
T ss_pred             HHhcCCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCC-CCEEEEcCChH
Confidence            78899999999998          35889999999999999999999999999999999988763  6 89999999999


Q ss_pred             CCC-----CeeEEecCCCCCHHHHHHHHHHHHHcCCee
Q 004972          448 HVM-----PLLEIVRTERTSAQVILDLMTVGKIIKKVP  480 (721)
Q Consensus       448 ~~~-----~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~  480 (721)
                      ..+     +..+ ++.-++....+.....+.+.+|..+
T Consensus       149 ~i~t~~~~k~~~-~rviG~c~~~~~~~~~~a~~l~~~~  185 (423)
T cd05297         149 AELTWALNRYTP-IKTVGLCHGVQGTAEQLAKLLGEPP  185 (423)
T ss_pred             HHHHHHHHHhCC-CCEEEECCcHHHHHHHHHHHhCCCH
Confidence            665     3332 2211122225555666667777643

linked to 3D####ucture

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.26  E-value=2.2e-10  Score=117.90  Aligned_cols=188  Identities=13%  Similarity=0.125  Sum_probs=131.0

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCC---c-eEEEeCC-HHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNI---Y-VVLKEVN-SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  379 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~---~-V~l~d~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  379 (721)
                      .+||+|||+|.||.+++..++++|.   + |++++++ +++++...+.                      . .+..+++.
T Consensus         4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~----------------------~-~~~~~~~~   60 (245)
T PRK07634          4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQAR----------------------Y-NVSTTTDW   60 (245)
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHH----------------------c-CcEEeCCh
Confidence            3589999999999999999998873   3 7788874 5655443210                      0 12334444


Q ss_pred             -cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEe-c
Q 004972          380 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-R  457 (721)
Q Consensus       380 -~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv-~  457 (721)
                       +.++++|+||.|+|  ....+++++++.++++ +.+|+|.+.++++..+...++...+++..||..|......+..+ .
T Consensus        61 ~~~~~~~DiViiavp--~~~~~~v~~~l~~~~~-~~~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a~~v~~g~~~~~~  137 (245)
T PRK07634         61 KQHVTSVDTIVLAMP--PSAHEELLAELSPLLS-NQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAAEIGKSISLYTM  137 (245)
T ss_pred             HHHHhcCCEEEEecC--HHHHHHHHHHHHhhcc-CCEEEEECCCCCHHHHHHHcCCCCeEEEECCcHHHHHhcCCeEEee
Confidence             45789999999999  6677888898887766 45888999999999999888765678889998777666555444 4


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhh-------hhhHHHHHHHH-HHHcCCCHHHHHHHH
Q 004972          458 TERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNR-------AFFPYSQSARL-LVSLGVDVFRIDSAI  519 (721)
Q Consensus       458 ~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~gfi~nR-------l~~~~~~Ea~~-l~~~Gv~~~~ID~a~  519 (721)
                      ....+++..+.+..+++.+|..+.+ .+.--...--       .++.++..... .++.|+++++-.+++
T Consensus       138 ~~~~~~~~~~~v~~lf~~~G~~~~~-~e~~~~~~~a~~gs~pa~~~~~~~a~~~~~~~~Gl~~~~a~~~~  206 (245)
T PRK07634        138 GQSVNETHKETLQLILKGIGTSQLC-TEEEVHQLTAVTGSAPAFLYYFAESLIEATKSYGVDEETAKHLV  206 (245)
T ss_pred             CCCCCHHHHHHHHHHHHhCCCEEEE-CHHHcchHHhhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            5667899999999999999999864 3321111100       11122222222 334488888877765

>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type

Probab=99.26  E-value=5.2e-11  Score=118.86  Aligned_cols=151  Identities=25%  Similarity=0.325  Sum_probs=108.1

Q ss_pred             EEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHH
Q 004972           15 VAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLI   94 (721)
Q Consensus        15 v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l   94 (721)
                      |++|+++.+    ++ ....+|.++++.+.+|+++++|||+..    |.|+++...                .++. +.|
T Consensus         2 v~vi~i~g~----i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~----s~Gg~~~~~----------------~~l~-~~i   55 (207)
T TIGR00706         2 IAILPVSGA----IA-VSPEDFDKKIKRIKDDKSIKALLLRIN----SPGGTVVAS----------------EEIY-EKL   55 (207)
T ss_pred             EEEEEEEEE----Ee-cCHHHHHHHHHHHhhCCCccEEEEEec----CCCCCHHHH----------------HHHH-HHH
Confidence            666777654    11 235789999999999999999999974    777776532                2333 456


Q ss_pred             hhCC--CcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccc------------cCcccc-----------------
Q 004972           95 EDCK--KPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGVIPG-----------------  143 (721)
Q Consensus        95 ~~~~--~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~------------~Gl~P~-----------------  143 (721)
                      ..++  ||+||+++|.|.|+|+.|+++||.+++++++.++...+.            +|+-+.                 
T Consensus        56 ~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~  135 (207)
T TIGR00706        56 KKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTREL  135 (207)
T ss_pred             HHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCC
Confidence            6676  999999999999999999999999999999988764332            344221                 


Q ss_pred             c----c-----------------ccccccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHH
Q 004972          144 T----Q-----------------RLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRL  192 (721)
Q Consensus       144 ~----~-----------------~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~  192 (721)
                      +    .                 .-.|-+......+ ++.|+.+++++|++.||||++...+++.+...+
T Consensus       136 s~~~~e~~~~~l~~~~~~f~~~va~~R~~~~~~~~~-~~~~~~~~~~~A~~~gLvD~i~~~~~~~~~~~~  204 (207)
T TIGR00706       136 TPEERDILQNLVNESYEQFVQVVAKGRNLPVEDVKK-FADGRVFTGRQALKLRLVDKLGTEDDALKWLAE  204 (207)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH-HhcCCcccHHHHHHcCCCcccCCHHHHHHHHHH
Confidence            0    0                 0112233333333 467899999999999999999987776655443

The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.24  E-value=1.5e-11  Score=127.39  Aligned_cols=170  Identities=16%  Similarity=0.121  Sum_probs=112.0

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  383 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  383 (721)
                      ++||+|||+|.||+++|..|+++||+|++|.++++.+++.....  ...+++..-.+        ...+.+++|+ ++++
T Consensus         1 ~~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~--~N~~yLp~i~l--------p~~l~at~Dl~~a~~   70 (329)
T COG0240           1 MMKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETR--ENPKYLPGILL--------PPNLKATTDLAEALD   70 (329)
T ss_pred             CceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcC--cCccccCCccC--------CcccccccCHHHHHh
Confidence            36899999999999999999999999999999999988865431  11112221112        2457888888 6678


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH------HHHhcccCCCCcEEEe-cCCCCC---CCCCee
Q 004972          384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL------NIVGEKTSSQDRIIGA-HFFSPA---HVMPLL  453 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i------~~l~~~~~~~~r~ig~-h~~~p~---~~~~lv  453 (721)
                      +||+|+.+||  .+..+++++++..++++++++++.+.++..      +++.+..-....+..+ -|....   ...|..
T Consensus        71 ~ad~iv~avP--s~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~A~EVa~g~pta  148 (329)
T COG0240          71 GADIIVIAVP--SQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSFAKEVAQGLPTA  148 (329)
T ss_pred             cCCEEEEECC--hHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccHHHHHhcCCCcE
Confidence            8999999999  999999999998899999999887776543      3444333221221111 111000   111111


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCc
Q 004972          454 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG  488 (721)
Q Consensus       454 Eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~g  488 (721)
                      .++.+  .+++..+.+..++..=-.++....|..|
T Consensus       149 ~~vas--~d~~~a~~v~~~f~~~~Frvy~~~Dv~G  181 (329)
T COG0240         149 VVVAS--NDQEAAEKVQALFSSPYFRVYTSTDVIG  181 (329)
T ss_pred             EEEec--CCHHHHHHHHHHhCCCcEEEEecCchhh
Confidence            22222  4777777777777764445555566554

>PLN02858 fructose-bisphosphate aldolase

Probab=99.24  E-value=1.4e-10  Score=143.64  Aligned_cols=190  Identities=18%  Similarity=0.176  Sum_probs=129.5

Q ss_pred             CceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc
Q 004972          304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  382 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  382 (721)
                      .+++|+|||+|.||.+||..|+.+|++|++||+++++.+...           ..|             ....++. +.+
T Consensus       323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~G-------------a~~~~s~~e~~  378 (1378)
T PLN02858        323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFE-----------NAG-------------GLAGNSPAEVA  378 (1378)
T ss_pred             CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HcC-------------CeecCCHHHHH
Confidence            357899999999999999999999999999999998876542           112             1112333 567


Q ss_pred             CCCCEEEEcccCChHHHHHHHH--HHHhhCCCCeEEEecCCCCCHH---HHhcccCCCCcEEEecCCCCC--------CC
Q 004972          383 KDVDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPA--------HV  449 (721)
Q Consensus       383 ~~aDlVIeavpe~~~~k~~v~~--~l~~~~~~~~ii~s~ts~~~i~---~l~~~~~~~~r~ig~h~~~p~--------~~  449 (721)
                      ++||+||.|||.+.++...++.  .+.+.+.++.+++.. |+.++.   ++++.+..  .-.|.+|.+.|        ..
T Consensus       379 ~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~-STvsP~~~~~la~~l~~--~g~g~~~lDAPVsGg~~~A~~  455 (1378)
T PLN02858        379 KDVDVLVIMVANEVQAENVLFGDLGAVSALPAGASIVLS-STVSPGFVIQLERRLEN--EGRDIKLVDAPVSGGVKRAAM  455 (1378)
T ss_pred             hcCCEEEEecCChHHHHHHHhchhhHHhcCCCCCEEEEC-CCCCHHHHHHHHHHHHh--hCCCcEEEEccCCCChhhhhc
Confidence            8999999999977666555543  355667788887754 444443   33333321  01255555433        22


Q ss_pred             CCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCc-----hhhhhhhh----HHHHHHHHHHHc-CCCHHHHHHHH
Q 004972          450 MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG-----FAVNRAFF----PYSQSARLLVSL-GVDVFRIDSAI  519 (721)
Q Consensus       450 ~~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~g-----fi~nRl~~----~~~~Ea~~l~~~-Gv~~~~ID~a~  519 (721)
                      +.+.-++.|   +++.+++++++++.+|+.++++...+|     -++|.++.    +.+.|++.+.+. |++++.+-.++
T Consensus       456 G~L~imvgG---~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl  532 (1378)
T PLN02858        456 GTLTIMASG---TDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDII  532 (1378)
T ss_pred             CCceEEEEC---CHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            223334444   688999999999999998887644344     34555543    335799999877 99999988887


Q ss_pred             -HhcC
Q 004972          520 -RSFG  523 (721)
Q Consensus       520 -~~~G  523 (721)
                       .+.|
T Consensus       533 ~~s~g  537 (1378)
T PLN02858        533 SNAGG  537 (1378)
T ss_pred             Hhhcc
Confidence             5544

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=99.22  E-value=2.4e-10  Score=120.60  Aligned_cols=202  Identities=11%  Similarity=0.038  Sum_probs=138.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCC-HHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVN-SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  384 (721)
                      +||+|||+|+||.++|..|...|++|+++++. .+..+.+.           +.|             +..++..+.+++
T Consensus         4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~-----------~~G-------------v~~~s~~ea~~~   59 (314)
T TIGR00465         4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKAT-----------EDG-------------FKVGTVEEAIPQ   59 (314)
T ss_pred             CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHH-----------HCC-------------CEECCHHHHHhc
Confidence            57999999999999999999999998876654 33333321           111             223333356789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCC-------CCeeEEe-
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHV-------MPLLEIV-  456 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~-------~~lvEiv-  456 (721)
                      ||+|+.++|... ....+.+++.+.++++. ++|...++++..+...++...+++.+.|..|.+.       +..+..+ 
T Consensus        60 ADiVvLaVpp~~-~~~~v~~ei~~~l~~g~-iVs~aaG~~i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~  137 (314)
T TIGR00465        60 ADLIMNLLPDEV-QHEVYEAEIQPLLKEGK-TLGFSHGFNIHFVQIVPPKDVDVVMVAPKGPGTLVREEYKEGFGVPTLI  137 (314)
T ss_pred             CCEEEEeCCcHh-HHHHHHHHHHhhCCCCc-EEEEeCCccHhhccccCCCCCcEEEECCCCCcHHHHHHhhcCCCeeEEE
Confidence            999999999432 45566777888888776 5678889999988777765568999999999984       6666433 


Q ss_pred             -cCCCCCHHHHHHHHHHHHHcCCe-------eE--EEc-CCCch--hhhhhhhHHH---HHHHHHHHcCCCHHHHHHHH-
Q 004972          457 -RTERTSAQVILDLMTVGKIIKKV-------PV--VVG-NCTGF--AVNRAFFPYS---QSARLLVSLGVDVFRIDSAI-  519 (721)
Q Consensus       457 -~~~~t~~e~~~~~~~l~~~lG~~-------~v--~v~-d~~gf--i~nRl~~~~~---~Ea~~l~~~Gv~~~~ID~a~-  519 (721)
                       .+...+.+..+.+..+++.+|..       ..  .+. |.-+-  ++.=..-+|+   .|++  ++.|++++.--... 
T Consensus       138 a~~~~~~~~~~~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~~~~eal--v~~G~~~e~A~~~~~  215 (314)
T TIGR00465       138 AVEQDPTGEAMAIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIKAGFDTL--VEAGYQPELAYFETV  215 (314)
T ss_pred             EecCCCCHHHHHHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHHHHHHHH--HHcCCCHHHHHHHHH
Confidence             56677899999999999999988       31  111 10000  0111112222   2555  78899998876665 


Q ss_pred             HhcCCCccHHHHHHhhchH
Q 004972          520 RSFGLPIGPFQLLDLAGYG  538 (721)
Q Consensus       520 ~~~G~p~Gpf~~~D~~Gld  538 (721)
                      ..+   .|-..++-..|+.
T Consensus       216 ~~~---~g~~~l~~e~g~~  231 (314)
T TIGR00465       216 HEL---KLIVDLIYEGGIT  231 (314)
T ss_pred             HHH---HHHHHHHHHhcHH
Confidence            333   4666677666764

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=99.22  E-value=5.6e-10  Score=120.76  Aligned_cols=171  Identities=10%  Similarity=0.026  Sum_probs=107.1

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  384 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  384 (721)
                      ++||+|||+|.||+.+|..|+++|++|++||+++. .+...+       ....-......+......++..+++.+.+.+
T Consensus         2 ~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~-------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (341)
T PRK08229          2 MARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRA-------HGLTLTDYRGRDVRVPPSAIAFSTDPAALAT   73 (341)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHh-------cCceeecCCCcceecccceeEeccChhhccC
Confidence            46899999999999999999999999999999653 222211       0000000000000001123555666677789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH-HHhcccCCCCcEEEecCCCCCCCCCe-------eEEe
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKTSSQDRIIGAHFFSPAHVMPL-------LEIV  456 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~-~l~~~~~~~~r~ig~h~~~p~~~~~l-------vEiv  456 (721)
                      +|+||+||+  .....++++++.+.++++++|++.++++... .+...+.....+.|.+++......|.       -+++
T Consensus        74 ~D~vil~vk--~~~~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~g~l~  151 (341)
T PRK08229         74 ADLVLVTVK--SAATADAAAALAGHARPGAVVVSFQNGVRNADVLRAALPGATVLAGMVPFNVISRGPGAFHQGTSGALA  151 (341)
T ss_pred             CCEEEEEec--CcchHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhCCCCcEEEEEEEEEEEecCCceEEecCCCceE
Confidence            999999998  3445788899999999999888877777653 45555543223344444321111111       1112


Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCc
Q 004972          457 RTERTSAQVILDLMTVGKIIKKVPVVVGNCTG  488 (721)
Q Consensus       457 ~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~g  488 (721)
                      -+   ..+.++.+.++++..|..+.+.+|..+
T Consensus       152 ~~---~~~~~~~~~~~l~~~g~~~~~~~di~~  180 (341)
T PRK08229        152 IE---ASPALRPFAAAFARAGLPLVTHEDMRA  180 (341)
T ss_pred             ec---CCchHHHHHHHHHhcCCCceecchhHH
Confidence            12   124568899999999988888888554

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=99.20  E-value=6e-10  Score=115.47  Aligned_cols=145  Identities=16%  Similarity=0.143  Sum_probs=113.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC----ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccc
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  381 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  381 (721)
                      +||+|||+|+||++|+..+.++|.    +|+++|++++..                 +            .....++.+.
T Consensus         4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-----------------~------------~~~~~~~~~~   54 (260)
T PTZ00431          4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-----------------P------------FVYLQSNEEL   54 (260)
T ss_pred             CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-----------------C------------eEEeCChHHH
Confidence            479999999999999999999873    499999876531                 0            0111222245


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEe-cCCC
Q 004972          382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RTER  460 (721)
Q Consensus       382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv-~~~~  460 (721)
                      +.+||+||.|+|  +....+++.++.++++++ +|+|..+++..+.+...++...+++...|..|........++ ++.+
T Consensus        55 ~~~~D~Vilavk--p~~~~~vl~~i~~~l~~~-~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn~p~~~g~g~t~i~~~~~  131 (260)
T PTZ00431         55 AKTCDIIVLAVK--PDLAGKVLLEIKPYLGSK-LLISICGGLNLKTLEEMVGVEAKIVRVMPNTPSLVGQGSLVFCANNN  131 (260)
T ss_pred             HHhCCEEEEEeC--HHHHHHHHHHHHhhccCC-EEEEEeCCccHHHHHHHcCCCCeEEEECCCchhHhcceeEEEEeCCC
Confidence            678999999998  888999999998887765 557888899999888877655567788888888777665544 5667


Q ss_pred             CCHHHHHHHHHHHHHcCCeeEE
Q 004972          461 TSAQVILDLMTVGKIIKKVPVV  482 (721)
Q Consensus       461 t~~e~~~~~~~l~~~lG~~~v~  482 (721)
                      ++++..+.+..+++.+|....+
T Consensus       132 ~~~~~~~~v~~l~~~~G~~~~v  153 (260)
T PTZ00431        132 VDSTDKKKVIDIFSACGIIQEI  153 (260)
T ss_pred             CCHHHHHHHHHHHHhCCcEEEE
Confidence            7899999999999999988765

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=99.18  E-value=4.4e-10  Score=113.50  Aligned_cols=163  Identities=16%  Similarity=0.112  Sum_probs=109.9

Q ss_pred             eeEEEEc-CCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972          306 RKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  384 (721)
Q Consensus       306 ~kI~VIG-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  384 (721)
                      +||+||| +|.||+++|..|+++|++|+++++++++++........   .....+ +.        ..+..+++.+.+++
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~---~~~~~g-~~--------~~~~~~~~~ea~~~   68 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALE---ELGHGG-SD--------IKVTGADNAEAAKR   68 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHh---hccccC-CC--------ceEEEeChHHHHhc
Confidence            3799997 89999999999999999999999999887664332111   000111 00        01222344466889


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH-----------------HHHhcccCCCCcEEEecCCCCC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-----------------NIVGEKTSSQDRIIGAHFFSPA  447 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i-----------------~~l~~~~~~~~r~ig~h~~~p~  447 (721)
                      +|+||.|||  .....++++++.+.++. ++|++.+.++..                 +.+++.++...+++....+.|.
T Consensus        69 aDvVilavp--~~~~~~~l~~l~~~l~~-~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVka~~~~~a  145 (219)
T TIGR01915        69 ADVVILAVP--WDHVLKTLESLRDELSG-KLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVAAFHNLSA  145 (219)
T ss_pred             CCEEEEECC--HHHHHHHHHHHHHhccC-CEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEeeccccCCH
Confidence            999999999  77777888888776654 777777776665                 2344444433577776543332


Q ss_pred             CCC-------CeeEEecCCCCCHHHHHHHHHHHHHc-CCeeEEEcC
Q 004972          448 HVM-------PLLEIVRTERTSAQVILDLMTVGKII-KKVPVVVGN  485 (721)
Q Consensus       448 ~~~-------~lvEiv~~~~t~~e~~~~~~~l~~~l-G~~~v~v~d  485 (721)
                      ...       +....+.|.  ++++.+.+..+.+.+ |..|+.++.
T Consensus       146 ~~~~~~~~~~~~~~~v~Gd--d~~ak~~v~~L~~~~~G~~~vd~G~  189 (219)
T TIGR01915       146 VLLQDVDDEVDCDVLVCGD--DEEAKEVVAELAGRIDGLRALDAGP  189 (219)
T ss_pred             HHhcCCCCCCCCCEEEECC--CHHHHHHHHHHHHhcCCCCcccCCc
Confidence            211       112234443  677899999999999 999998875

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=99.17  E-value=3.8e-10  Score=134.52  Aligned_cols=156  Identities=17%  Similarity=0.188  Sum_probs=117.8

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCC--CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cc
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  381 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  381 (721)
                      ++||+|||+|.||.+++..+.+.|  ++|++||++++.++.+.           +.|...           ...++. +.
T Consensus         3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~-----------~~g~~~-----------~~~~~~~~~   60 (735)
T PRK14806          3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAV-----------SLGVID-----------RGEEDLAEA   60 (735)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHH-----------HCCCCC-----------cccCCHHHH
Confidence            578999999999999999999999  48999999998866532           112110           112333 45


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCC--CHHHHhcccC-CCCcEEEecCCCCCC----------
Q 004972          382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTS-SQDRIIGAHFFSPAH----------  448 (721)
Q Consensus       382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--~i~~l~~~~~-~~~r~ig~h~~~p~~----------  448 (721)
                      +++||+||+|+|  .....++++++.++++++++|++.+|..  .+..+.+.+. ...||++.||+..+.          
T Consensus        61 ~~~aDvVilavp--~~~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~  138 (735)
T PRK14806         61 VSGADVIVLAVP--VLAMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANAD  138 (735)
T ss_pred             hcCCCEEEECCC--HHHHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhH
Confidence            789999999999  6778899999999888888876555432  2555555543 356899999975332          


Q ss_pred             --CCCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004972          449 --VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG  484 (721)
Q Consensus       449 --~~~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~  484 (721)
                        ..+.+.++++..++++..+.+.++++.+|+.++++.
T Consensus       139 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~~~  176 (735)
T PRK14806        139 LFRNHKVILTPLAETDPAALARVDRLWRAVGADVLHMD  176 (735)
T ss_pred             HhCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence              234456788888899999999999999999998884

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.15  E-value=2.1e-10  Score=123.23  Aligned_cols=165  Identities=14%  Similarity=0.086  Sum_probs=99.6

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  383 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  383 (721)
                      ++||+|||+|.||++||..|+++|++|++|+++++..+.+.....+.  .... +.       ....++..+++. +.++
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~--~~~~-g~-------~~~~~~~~~~~~~e~~~   73 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENR--EYLP-GV-------ALPAELYPTADPEEALA   73 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCccc--ccCC-CC-------cCCCCeEEeCCHHHHHc
Confidence            35899999999999999999999999999999998876653211100  0000 10       001124455565 5578


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCC-----HHHHhcccCC--CCcEE-EecCCCCCCC---CCe
Q 004972          384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID-----LNIVGEKTSS--QDRII-GAHFFSPAHV---MPL  452 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~-----i~~l~~~~~~--~~r~i-g~h~~~p~~~---~~l  452 (721)
                      +||+||+|+|..  ..++++    +.+++++++++.++++.     ...+++.+..  ..++. ..-|..+...   .+.
T Consensus        74 ~aD~Vi~~v~~~--~~~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~  147 (328)
T PRK14618         74 GADFAVVAVPSK--ALRETL----AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPA  147 (328)
T ss_pred             CCCEEEEECchH--HHHHHH----HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCe
Confidence            999999999955  334444    44567777776666554     3344443321  11211 1112111111   112


Q ss_pred             eEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCC
Q 004972          453 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCT  487 (721)
Q Consensus       453 vEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~  487 (721)
                      ..++.+  .+++.++.++++++..|..+.+..|..
T Consensus       148 ~~~~~~--~~~~~~~~v~~ll~~~~~~v~~~~di~  180 (328)
T PRK14618        148 ATVVAS--PEPGLARRVQAAFSGPSFRVYTSRDRV  180 (328)
T ss_pred             EEEEEe--CCHHHHHHHHHHhCCCcEEEEecCCcc
Confidence            233333  378899999999999998887544433

>PLN02712 arogenate dehydrogenase

Probab=99.13  E-value=6.1e-10  Score=129.06  Aligned_cols=154  Identities=10%  Similarity=0.023  Sum_probs=110.0

Q ss_pred             CceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcc-cc
Q 004972          304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-EF  382 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l  382 (721)
                      ..+||+|||+|.||.++|..|.+.|++|++||++.+. +.+.           +.|             +...++.+ .+
T Consensus       368 ~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~-----------~~G-------------v~~~~~~~el~  422 (667)
T PLN02712        368 SKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQ-----------KLG-------------VSYFSDADDLC  422 (667)
T ss_pred             CCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHH-----------HcC-------------CeEeCCHHHHH
Confidence            3468999999999999999999999999999998542 2211           111             22234443 24


Q ss_pred             C-CCCEEEEcccCChHHHHHHHHHHHh-hCCCCeEEEecCCC--CCHHHHhcccCCCCcEEEecCCCCCCCCC-e----e
Q 004972          383 K-DVDMVIEAVIESVPLKQKIFSELEK-ACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFSPAHVMP-L----L  453 (721)
Q Consensus       383 ~-~aDlVIeavpe~~~~k~~v~~~l~~-~~~~~~ii~s~ts~--~~i~~l~~~~~~~~r~ig~h~~~p~~~~~-l----v  453 (721)
                      . +||+||.|||  ......++.++.. .++++++|++.+|+  .++..+....+...+|++.||..++.... .    .
T Consensus       423 ~~~aDvVILavP--~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~G~e~~~~G~~~~~  500 (667)
T PLN02712        423 EEHPEVILLCTS--ILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPMFGPESGKNGWNNLA  500 (667)
T ss_pred             hcCCCEEEECCC--hHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCCCCccccccchhhhh
Confidence            3 5899999999  6777788888765 57889999987776  44555555555555799999988776531 1    1


Q ss_pred             -----EEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004972          454 -----EIVRTERTSAQVILDLMTVGKIIKKVPVVVG  484 (721)
Q Consensus       454 -----Eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~  484 (721)
                           -++.++....+.++.+..+++.+|.+++.+.
T Consensus       501 ~lf~~~~v~~~~~~~~~~~~l~~l~~~lGa~vv~ms  536 (667)
T PLN02712        501 FVFDKVRIGSDDRRVSRCDSFLDIFAREGCRMVEMS  536 (667)
T ss_pred             hhccCcEeCCCcchHHHHHHHHHHHHHcCCEEEEeC
Confidence                 1123344456677778899999999999883

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=99.12  E-value=5.5e-11  Score=113.42  Aligned_cols=105  Identities=23%  Similarity=0.231  Sum_probs=79.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCCC
Q 004972          307 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV  385 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~a  385 (721)
                      ||+|||+|.||.++|..++.+|++|++|.++++.++...+...       ....+..   ......+..++|+ ++++++
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~-------n~~~~~~---~~l~~~i~~t~dl~~a~~~a   70 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQ-------NPKYLPG---IKLPENIKATTDLEEALEDA   70 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTS-------ETTTSTT---SBEETTEEEESSHHHHHTT-
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCC-------CCCCCCC---cccCcccccccCHHHHhCcc
Confidence            7999999999999999999999999999999988776543211       0000110   1112357788888 678999


Q ss_pred             CEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCC
Q 004972          386 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI  423 (721)
Q Consensus       386 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~  423 (721)
                      |+||.+||  ....+++++++.+++++++++++.+.++
T Consensus        71 d~IiiavP--s~~~~~~~~~l~~~l~~~~~ii~~~KG~  106 (157)
T PF01210_consen   71 DIIIIAVP--SQAHREVLEQLAPYLKKGQIIISATKGF  106 (157)
T ss_dssp             SEEEE-S---GGGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred             cEEEeccc--HHHHHHHHHHHhhccCCCCEEEEecCCc
Confidence            99999999  8888999999999999999999888776

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.11  E-value=4.2e-09  Score=112.10  Aligned_cols=167  Identities=15%  Similarity=0.166  Sum_probs=108.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      +||+|||+|.||+++|..|+.+|++|++|+++++.                                     ++ +.+++
T Consensus         5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~~-------------------------------------~~~~~~~~   47 (308)
T PRK14619          5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRSGL-------------------------------------SLAAVLAD   47 (308)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCCC-------------------------------------CHHHHHhc
Confidence            47999999999999999999999999999998531                                     11 34578


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhh-CCCCeEEEecCCCCCHHH------HhcccCCCCcEEEecCCCCCC------CCC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKA-CPPHCILATNTSTIDLNI------VGEKTSSQDRIIGAHFFSPAH------VMP  451 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~-~~~~~ii~s~ts~~~i~~------l~~~~~~~~r~ig~h~~~p~~------~~~  451 (721)
                      ||+||.|+|.  ...+.++.++.++ +++++++++.++++.+..      +....-...+++.  +..|..      ..+
T Consensus        48 advvi~~vp~--~~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~~~v~~--i~gp~~a~ei~~~~~  123 (308)
T PRK14619         48 ADVIVSAVSM--KGVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPNHPVVV--LSGPNLSKEIQQGLP  123 (308)
T ss_pred             CCEEEEECCh--HHHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCCCceEE--EECCCcHHHHhcCCC
Confidence            9999999994  5677888888764 678888888776554332      1111101112221  011110      001


Q ss_pred             eeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCc----------------------hhhhhh---hhHHHHHHHHHH
Q 004972          452 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG----------------------FAVNRA---FFPYSQSARLLV  506 (721)
Q Consensus       452 lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~g----------------------fi~nRl---~~~~~~Ea~~l~  506 (721)
                      ..-++.+  .+.+..+.+.++++..|..+++..|..|                      +..|-.   +...+.|++.+.
T Consensus       124 ~~~~~ag--~~~~~~~~v~~ll~~~~~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~  201 (308)
T PRK14619        124 AATVVAS--RDLAAAETVQQIFSSERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVG  201 (308)
T ss_pred             eEEEEEe--CCHHHHHHHHHHhCCCcEEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHH
Confidence            2222223  3788999999999999988886666444                      222222   222245888887


Q ss_pred             Hc-CCCHHHH
Q 004972          507 SL-GVDVFRI  515 (721)
Q Consensus       507 ~~-Gv~~~~I  515 (721)
                      +. |++++.+
T Consensus       202 ~~~G~~~~t~  211 (308)
T PRK14619        202 THLGAQTETF  211 (308)
T ss_pred             HHhCCCcccc
Confidence            77 7766555

>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad

Probab=99.09  E-value=5.1e-10  Score=113.02  Aligned_cols=143  Identities=22%  Similarity=0.255  Sum_probs=106.6

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEEC
Q 004972           27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE  106 (721)
Q Consensus        27 al~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav~  106 (721)
                      .-+...+.+|.+.++++.+|+++++|||+..+..| ++.+++++.                +.+ +.+...+|||||.++
T Consensus        25 ~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg-~~~~~~el~----------------~~i-~~~~~~~kpVia~~~   86 (222)
T cd07018          25 ESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSG-GLAKLEELR----------------QAL-ERFRASGKPVIAYAD   86 (222)
T ss_pred             CcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCC-CHHHHHHHH----------------HHH-HHHHHhCCeEEEEeC
Confidence            34567789999999999999999999999887777 777766652                333 346668999999999


Q ss_pred             CcccccchHhhhhcCEEEeeCCceEeCcccc------------cCcccc-----------cccc----------------
Q 004972          107 GLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGVIPG-----------TQRL----------------  147 (721)
Q Consensus       107 G~a~GgG~~lalacD~ria~~~a~~~~pe~~------------~Gl~P~-----------~~~l----------------  147 (721)
                      | |.+||+.|+++||.+++.+.+.|+...+.            +|+-+.           ..+.                
T Consensus        87 ~-~~sggy~lasaad~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~~l  165 (222)
T cd07018          87 G-YSQGQYYLASAADEIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQALL  165 (222)
T ss_pred             C-CCchhhhhhhhCCEEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHHHH
Confidence            8 88999999999999999999999986432            233221           0000                


Q ss_pred             -------------ccccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHH
Q 004972          148 -------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKV  189 (721)
Q Consensus       148 -------------~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~  189 (721)
                                   .|-+..... +-+..|..+++++|++.||||++...+++.+.
T Consensus       166 ~~~~~~f~~~Va~~R~~~~~~~-~~~~~~~~~~~~~A~~~GLvD~i~~~~e~~~~  219 (222)
T cd07018         166 DSLWDQYLADVAASRGLSPDAL-EALIDLGGDSAEEALEAGLVDGLAYRDELEAR  219 (222)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHH-HHHHHcCCcHHHHHHHCCCCCcCCcHHHHHHH
Confidence                         111222222 23345999999999999999999987777654

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=99.07  E-value=3.1e-10  Score=120.59  Aligned_cols=126  Identities=20%  Similarity=0.315  Sum_probs=94.0

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  383 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  383 (721)
                      .+||+|||+|.||+++|..++..|+ +|+++|++++.++.-.      ++.....      .......++..++++++++
T Consensus         6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~------ld~~~~~------~~~~~~~~I~~~~d~~~l~   73 (321)
T PTZ00082          6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKA------LDISHSN------VIAGSNSKVIGTNNYEDIA   73 (321)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHH------HHHHhhh------hccCCCeEEEECCCHHHhC
Confidence            3699999999999999999999996 9999999998753211      1111110      0011113577778889999


Q ss_pred             CCCEEEEcc-------------------cCChHHHHHHHHHHHhhCCCC-eEEEecCCCCCHHHHhcccCCC-CcEEEec
Q 004972          384 DVDMVIEAV-------------------IESVPLKQKIFSELEKACPPH-CILATNTSTIDLNIVGEKTSSQ-DRIIGAH  442 (721)
Q Consensus       384 ~aDlVIeav-------------------pe~~~~k~~v~~~l~~~~~~~-~ii~s~ts~~~i~~l~~~~~~~-~r~ig~h  442 (721)
                      +||+||++.                   +++..+++++++++.+++++. .|++||++.+....+......| .|++|++
T Consensus        74 ~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg  153 (321)
T PTZ00082         74 GSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA  153 (321)
T ss_pred             CCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence            999999955                   567888999999999999764 4556888887777777766654 7898876

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=99.06  E-value=1.6e-09  Score=111.98  Aligned_cols=140  Identities=17%  Similarity=0.140  Sum_probs=102.3

Q ss_pred             HHHHHHHCC--CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCCCEEEEcccCChH
Q 004972          320 IATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVP  397 (721)
Q Consensus       320 iA~~la~~G--~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVIeavpe~~~  397 (721)
                      ||..|.++|  ++|+.||++++.++.+.           +.|.++           ...++.+.+++||+||.|+|  +.
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~-----------~~g~~~-----------~~~~~~~~~~~~DlvvlavP--~~   56 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAAL-----------ELGIID-----------EASTDIEAVEDADLVVLAVP--VS   56 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHHH-----------HTTSSS-----------EEESHHHHGGCCSEEEE-S---HH
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHHH-----------HCCCee-----------eccCCHhHhcCCCEEEEcCC--HH
Confidence            688899999  78999999999877753           333222           11222567899999999999  99


Q ss_pred             HHHHHHHHHHhhCCCCeEEEecCCCC--CHHHHhcccCCCCcEEEecCCCCC------------CCCCeeEEecCCCCCH
Q 004972          398 LKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTSSQDRIIGAHFFSPA------------HVMPLLEIVRTERTSA  463 (721)
Q Consensus       398 ~k~~v~~~l~~~~~~~~ii~s~ts~~--~i~~l~~~~~~~~r~ig~h~~~p~------------~~~~lvEiv~~~~t~~  463 (721)
                      ....+++++.++++++++|++.+|..  ++..+........+|+|.||...+            ..+..+-+++++.+++
T Consensus        57 ~~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~  136 (258)
T PF02153_consen   57 AIEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDP  136 (258)
T ss_dssp             HHHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-H
T ss_pred             HHHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChH
Confidence            99999999999999999999877753  344555555556799999997655            2355677889999999


Q ss_pred             HHHHHHHHHHHHcCCeeEEE
Q 004972          464 QVILDLMTVGKIIKKVPVVV  483 (721)
Q Consensus       464 e~~~~~~~l~~~lG~~~v~v  483 (721)
                      +.++.+..|++.+|.+++.+
T Consensus       137 ~~~~~~~~l~~~~Ga~~~~~  156 (258)
T PF02153_consen  137 EALELVEELWEALGARVVEM  156 (258)
T ss_dssp             HHHHHHHHHHHHCT-EEEE-
T ss_pred             HHHHHHHHHHHHCCCEEEEc
Confidence            99999999999999999887

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=99.04  E-value=8.2e-10  Score=107.90  Aligned_cols=114  Identities=20%  Similarity=0.225  Sum_probs=74.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHh--hcCceeccCcc-cc
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNA--LKMLKGVLDYS-EF  382 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~i~~~~~~~-~l  382 (721)
                      |||+|||+|.+|..+|..|+.+|++|+++|++++.++...+....    ..+.+ + ++-..+.  .+++.++++.+ ++
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p----~~E~~-l-~~ll~~~~~~~~l~~t~~~~~ai   74 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELP----IYEPG-L-DELLKENVSAGRLRATTDIEEAI   74 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSS----S-CTT-H-HHHHHHHHHTTSEEEESEHHHHH
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhcccc----ccccc-h-hhhhccccccccchhhhhhhhhh
Confidence            589999999999999999999999999999999998875432000    00000 0 0111111  25788898884 48


Q ss_pred             CCCCEEEEcccC--------ChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH
Q 004972          383 KDVDMVIEAVIE--------SVPLKQKIFSELEKACPPHCILATNTSTIDLN  426 (721)
Q Consensus       383 ~~aDlVIeavpe--------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~  426 (721)
                      ++||++|.|||.        |.....+..++|.++++++.+++. -|++++.
T Consensus        75 ~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~-~STvppG  125 (185)
T PF03721_consen   75 KDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVI-ESTVPPG  125 (185)
T ss_dssp             HH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEE-SSSSSTT
T ss_pred             hccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEE-ccEEEEe
Confidence            999999999984        456678889999999999888764 4455543

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=99.03  E-value=5.6e-09  Score=101.29  Aligned_cols=155  Identities=17%  Similarity=0.150  Sum_probs=106.5

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  384 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  384 (721)
                      |++|+|+|+|+||+++|..|+++||+|++-.++.+....+...                    .....++..++.++++.
T Consensus         1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~--------------------~l~~~i~~~~~~dA~~~   60 (211)
T COG2085           1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAA--------------------ALGPLITGGSNEDAAAL   60 (211)
T ss_pred             CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHH--------------------hhccccccCChHHHHhc
Confidence            5789999999999999999999999999996665543332211                    11123556666688899


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCC----------------HHH-HhcccCCCCcEEE-ec----
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID----------------LNI-VGEKTSSQDRIIG-AH----  442 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~----------------i~~-l~~~~~~~~r~ig-~h----  442 (721)
                      ||+||.+||  ......+++++...+. +.|+++.|..+.                .++ +++.++.. +++. .|    
T Consensus        61 aDVVvLAVP--~~a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~a-kVVkAFn~i~a  136 (211)
T COG2085          61 ADVVVLAVP--FEAIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGA-KVVKAFNTIPA  136 (211)
T ss_pred             CCEEEEecc--HHHHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCc-chhhhhcccCH
Confidence            999999999  8888899999988776 778887665421                112 22223322 3322 12    


Q ss_pred             --CCCCCCC-CCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004972          443 --FFSPAHV-MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN  485 (721)
Q Consensus       443 --~~~p~~~-~~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d  485 (721)
                        +-+-++. .+..-.+++.  +.++.+.+.++.+.+|..|+.++.
T Consensus       137 ~~l~~~~~~~~~~~v~vagD--D~~Ak~~v~~L~~~iG~~~ld~G~  180 (211)
T COG2085         137 AVLADLAKPGGRRDVLVAGD--DAEAKAVVAELAEDIGFRPLDAGP  180 (211)
T ss_pred             HHhccCCCcCCceeEEEecC--cHHHHHHHHHHHHhcCcceeeccc
Confidence              1111122 3333345553  788999999999999999999875

>PLN02712 arogenate dehydrogenase

Probab=99.02  E-value=5.6e-09  Score=121.11  Aligned_cols=153  Identities=15%  Similarity=0.103  Sum_probs=106.3

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccc-c-
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE-F-  382 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-l-  382 (721)
                      .+||+|||+|.||.++|..|.+.|++|++||++... +.+.           +.            + +...++.+. + 
T Consensus        52 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~-----------~~------------G-v~~~~d~~e~~~  106 (667)
T PLN02712         52 QLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAAR-----------SL------------G-VSFFLDPHDLCE  106 (667)
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHH-----------Hc------------C-CEEeCCHHHHhh
Confidence            358999999999999999999999999999998543 2111           11            1 222344432 3 


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHH-hhCCCCeEEEecCCCCC--HHHHhcccCCCCcEEEecCCCCCCCC-----CeeE
Q 004972          383 KDVDMVIEAVIESVPLKQKIFSELE-KACPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAHVM-----PLLE  454 (721)
Q Consensus       383 ~~aDlVIeavpe~~~~k~~v~~~l~-~~~~~~~ii~s~ts~~~--i~~l~~~~~~~~r~ig~h~~~p~~~~-----~lvE  454 (721)
                      .+||+||.|+|  ......++.++. +.++++++|++.+|...  ...+...++....|++.||...+...     ....
T Consensus       107 ~~aDvViLavP--~~~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~~~  184 (667)
T PLN02712        107 RHPDVILLCTS--IISTENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGLRF  184 (667)
T ss_pred             cCCCEEEEcCC--HHHHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCCCCeEEeeCCcCCCccccchhccCcE
Confidence            56999999999  677888888885 56788999887766532  33444444444479999997666421     1112


Q ss_pred             Eec-----CCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004972          455 IVR-----TERTSAQVILDLMTVGKIIKKVPVVVG  484 (721)
Q Consensus       455 iv~-----~~~t~~e~~~~~~~l~~~lG~~~v~v~  484 (721)
                      +..     .+....+.++.+.++++.+|.+++.+.
T Consensus       185 ~~~~~~~~~~~~~~~~~~~l~~l~~~lGa~v~~ms  219 (667)
T PLN02712        185 VYEKVRIGNEELRVSRCKSFLEVFEREGCKMVEMS  219 (667)
T ss_pred             EEeeccCCCccccHHHHHHHHHHHHHcCCEEEEeC
Confidence            222     222345667888899999999999984

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=99.01  E-value=5.6e-10  Score=118.29  Aligned_cols=122  Identities=18%  Similarity=0.288  Sum_probs=88.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCCC
Q 004972          308 VAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD  386 (721)
Q Consensus       308 I~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aD  386 (721)
                      |+|||+|.||.++|..++..|+ +|+++|++++.++...-.+..    ..        .......+++.+++++++++||
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~----~~--------~~~~~~~~I~~t~d~~~l~dAD   68 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQ----AA--------PILGSDTKVTGTNDYEDIAGSD   68 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHH----hh--------hhcCCCeEEEEcCCHHHhCCCC
Confidence            6899999999999999999887 999999998754321111111    00        0011123577777788899999


Q ss_pred             EEEEcc--------------cCChHHHHHHHHHHHhhCCCCeE-EEecCCCCCHHHHhcccCC-CCcEEEe
Q 004972          387 MVIEAV--------------IESVPLKQKIFSELEKACPPHCI-LATNTSTIDLNIVGEKTSS-QDRIIGA  441 (721)
Q Consensus       387 lVIeav--------------pe~~~~k~~v~~~l~~~~~~~~i-i~s~ts~~~i~~l~~~~~~-~~r~ig~  441 (721)
                      +||+++              +++..+++++++++.+++++..+ +++|.+.+....+...... |.|++|+
T Consensus        69 iVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGl  139 (300)
T cd01339          69 VVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGM  139 (300)
T ss_pred             EEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEe
Confidence            999866              67899999999999999977764 4577777666666665553 4677774

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK06223 malate dehydrogenase; Reviewed

Probab=99.00  E-value=1e-09  Score=116.85  Aligned_cols=125  Identities=18%  Similarity=0.283  Sum_probs=84.1

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  383 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  383 (721)
                      |+||+|||+|.||.++|..++..|+ +|+++|++++.++.....+....   ..         .....+++.++++++++
T Consensus         2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~---~~---------~~~~~~i~~~~d~~~~~   69 (307)
T PRK06223          2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAA---PV---------EGFDTKITGTNDYEDIA   69 (307)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhh---hh---------cCCCcEEEeCCCHHHHC
Confidence            4799999999999999999999876 99999999887543221111110   00         01113566677888899


Q ss_pred             CCCEEEEcc--------------cCChHHHHHHHHHHHhhCCCCeE-EEecCCCCCHHHHhcccC-CCCcEEEe
Q 004972          384 DVDMVIEAV--------------IESVPLKQKIFSELEKACPPHCI-LATNTSTIDLNIVGEKTS-SQDRIIGA  441 (721)
Q Consensus       384 ~aDlVIeav--------------pe~~~~k~~v~~~l~~~~~~~~i-i~s~ts~~~i~~l~~~~~-~~~r~ig~  441 (721)
                      +||+||+++              .++..+++++++++.+++++..+ +++|.+.+....+..... .+.+++|+
T Consensus        70 ~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~  143 (307)
T PRK06223         70 GSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGM  143 (307)
T ss_pred             CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEe
Confidence            999999987              35668899999999999866533 335554443333333333 23566664

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.98  E-value=5.6e-09  Score=112.58  Aligned_cols=179  Identities=14%  Similarity=0.095  Sum_probs=115.0

Q ss_pred             CCceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cc
Q 004972          303 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  381 (721)
Q Consensus       303 ~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  381 (721)
                      +.++||+|||+|.||+++|..|+++| +|++|.++++..+...+...+  ......+.       ....++..+++. +.
T Consensus         5 ~~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~--~~~l~~~~-------~l~~~i~~t~d~~~a   74 (341)
T PRK12439          5 KREPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRN--SRYLGNDV-------VLSDTLRATTDFAEA   74 (341)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCC--cccCCCCc-------ccCCCeEEECCHHHH
Confidence            34578999999999999999999999 799999999887765431100  00000010       011346667777 56


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH------H-HHhcccCCCCcEEEecCCCCCC---CCC
Q 004972          382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL------N-IVGEKTSSQDRIIGAHFFSPAH---VMP  451 (721)
Q Consensus       382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i------~-~l~~~~~~~~r~ig~h~~~p~~---~~~  451 (721)
                      ++++|+||.|||  ....+++++++.+++++++++++.+.++..      + .+.+.++.....+-..|..+..   ..+
T Consensus        75 ~~~aDlVilavp--s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a~ev~~g~~  152 (341)
T PRK12439         75 ANCADVVVMGVP--SHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIAREVAEGYA  152 (341)
T ss_pred             HhcCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHHHHHHcCCC
Confidence            799999999999  888999999999999998878777777664      2 3334333211111222221111   111


Q ss_pred             eeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhh
Q 004972          452 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAF  495 (721)
Q Consensus       452 lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~gfi~nRl~  495 (721)
                      ...++..  .+++..+.+..++..-+-.+....|..|...--.+
T Consensus       153 t~~via~--~~~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~al  194 (341)
T PRK12439        153 AAAVLAM--PDQHLATRLSPLFRTRRFRVYTTDDVVGVEMAGAL  194 (341)
T ss_pred             eEEEEEe--CCHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHH
Confidence            1112222  26778888888888878777777887765444443

>PTZ00117 malate dehydrogenase; Provisional

Probab=98.98  E-value=1.4e-09  Score=115.88  Aligned_cols=125  Identities=23%  Similarity=0.310  Sum_probs=91.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCC-CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  384 (721)
                      +||+|||+|.||.++|..++..| .+|+++|++++.++.-.-.....    ..        ......++..+++++++++
T Consensus         6 ~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~----~~--------~~~~~~~i~~~~d~~~l~~   73 (319)
T PTZ00117          6 KKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHF----ST--------LVGSNINILGTNNYEDIKD   73 (319)
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhh----cc--------ccCCCeEEEeCCCHHHhCC
Confidence            48999999999999999999999 59999999988755211111100    00        0001124666678889999


Q ss_pred             CCEEEEcc--cCCh------------HHHHHHHHHHHhhCCCC-eEEEecCCCCCHHHHhcccCCC-CcEEEec
Q 004972          385 VDMVIEAV--IESV------------PLKQKIFSELEKACPPH-CILATNTSTIDLNIVGEKTSSQ-DRIIGAH  442 (721)
Q Consensus       385 aDlVIeav--pe~~------------~~k~~v~~~l~~~~~~~-~ii~s~ts~~~i~~l~~~~~~~-~r~ig~h  442 (721)
                      ||+||+++  |++.            .+++++.+++.+++++. .|++||.+.+....+......| .|++|++
T Consensus        74 ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~g  147 (319)
T PTZ00117         74 SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMA  147 (319)
T ss_pred             CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence            99999999  7666            88999999999998776 4556788777666666655554 7888876

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=98.97  E-value=7.9e-09  Score=114.48  Aligned_cols=177  Identities=14%  Similarity=0.098  Sum_probs=120.3

Q ss_pred             CcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcc-c---cCCCCEEEEc
Q 004972          316 MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-E---FKDVDMVIEA  391 (721)
Q Consensus       316 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~---l~~aDlVIea  391 (721)
                      ||..||.+|+++|++|++||+++++.+...+.          .+. .        ..+....+++ .   ++.+|+||.+
T Consensus         1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~----------~g~-~--------~g~~~~~s~~e~v~~l~~~~~Ii~m   61 (459)
T PRK09287          1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAE----------EGK-G--------KKIVPAYTLEEFVASLEKPRKILLM   61 (459)
T ss_pred             CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHh----------hCC-C--------CCeEeeCCHHHHHhhCCCCCEEEEE
Confidence            89999999999999999999999998765320          010 0        1233444552 2   3358999999


Q ss_pred             ccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHH--HhcccCCCCcEEEecCCCCCC--------CCCeeEEecCCCC
Q 004972          392 VIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI--VGEKTSSQDRIIGAHFFSPAH--------VMPLLEIVRTERT  461 (721)
Q Consensus       392 vpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~--l~~~~~~~~r~ig~h~~~p~~--------~~~lvEiv~~~~t  461 (721)
                      ||.+.. ..+++..+.+.+.++.||++.+++.+...  ..+.+..    .|+||+..|-        .++  -+++|.  
T Consensus        62 v~~g~~-v~~Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~----~Gi~fvdapVSGG~~gA~~G~--siM~GG--  132 (459)
T PRK09287         62 VKAGAP-VDAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAE----KGIHFIGMGVSGGEEGALHGP--SIMPGG--  132 (459)
T ss_pred             CCCchH-HHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHh----cCCeEEecCCCCCHHHHhcCC--EEEEeC--
Confidence            996655 45566888899999999887665544332  2222321    2555544332        222  344443  


Q ss_pred             CHHHHHHHHHHHHHcCCee-------EEEcCCC-c----hhhhhhhhHH---HHHHHHHHHc--CCCHHHHHHHHH
Q 004972          462 SAQVILDLMTVGKIIKKVP-------VVVGNCT-G----FAVNRAFFPY---SQSARLLVSL--GVDVFRIDSAIR  520 (721)
Q Consensus       462 ~~e~~~~~~~l~~~lG~~~-------v~v~d~~-g----fi~nRl~~~~---~~Ea~~l~~~--Gv~~~~ID~a~~  520 (721)
                      ++++++.++++++.++.++       .++++.. |    .+.|-+.+..   +.|++.+++.  |++++++-.++.
T Consensus       133 ~~~a~~~~~piL~~ia~~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~  208 (459)
T PRK09287        133 QKEAYELVAPILEKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFA  208 (459)
T ss_pred             CHHHHHHHHHHHHHHhhhhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            7999999999999999886       8888732 2    2345555444   4599999983  899999988884

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=98.95  E-value=7.1e-08  Score=99.28  Aligned_cols=147  Identities=18%  Similarity=0.127  Sum_probs=96.9

Q ss_pred             CcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCCCCEEEEcccC
Q 004972          316 MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVDMVIEAVIE  394 (721)
Q Consensus       316 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~aDlVIeavpe  394 (721)
                      =|.+||.+|+++||+|++||+++++.+...      .+.+.+.|             ....++. +.+++||+||.|+|+
T Consensus        31 gGspMArnLlkAGheV~V~Drnrsa~e~e~------~e~LaeaG-------------A~~AaS~aEAAa~ADVVIL~LPd   91 (341)
T TIGR01724        31 GGSRMAIEFAMAGHDVVLAEPNREFMSDDL------WKKVEDAG-------------VKVVSDDKEAAKHGEIHVLFTPF   91 (341)
T ss_pred             CHHHHHHHHHHCCCEEEEEeCChhhhhhhh------hHHHHHCC-------------CeecCCHHHHHhCCCEEEEecCC
Confidence            488999999999999999999987654211      01112222             2233444 778999999999994


Q ss_pred             ChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCC----C---CcEEEecCCCCC-CCCCeeEEecC------CC
Q 004972          395 SVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSS----Q---DRIIGAHFFSPA-HVMPLLEIVRT------ER  460 (721)
Q Consensus       395 ~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~----~---~r~ig~h~~~p~-~~~~lvEiv~~------~~  460 (721)
                      + ...++++..+.+.+++++++++ +||+++..+...+..    .   -.+..+||-.=| ....-.-++.+      ..
T Consensus        92 ~-aaV~eVl~GLaa~L~~GaIVID-~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~~~~~~~~~~~~~~~~  169 (341)
T TIGR01724        92 G-KGTFSIARTIIEHVPENAVICN-TCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQHGHYVIGGKPTAGKEM  169 (341)
T ss_pred             H-HHHHHHHHHHHhcCCCCCEEEE-CCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCCCceeeecccccccccc
Confidence            4 4445566778888999998865 566666544443321    2   245556664322 12221223332      23


Q ss_pred             CCHHHHHHHHHHHHHcCCeeEEE
Q 004972          461 TSAQVILDLMTVGKIIKKVPVVV  483 (721)
Q Consensus       461 t~~e~~~~~~~l~~~lG~~~v~v  483 (721)
                      .++|.++++.++.+..|+.+.++
T Consensus       170 A~ee~i~~~~el~~~~~~~~~~~  192 (341)
T TIGR01724       170 ATEEQISKCVELAKSTGKKAYVV  192 (341)
T ss_pred             CCHHHHHHHHHHHHHhCCCeeec
Confidence            48999999999999999999988

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.94  E-value=5.4e-10  Score=118.09  Aligned_cols=70  Identities=16%  Similarity=0.232  Sum_probs=59.8

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHH-HHHHHHHHHHh
Q 004972          616 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANY-VYTSLKKWSQL  686 (721)
Q Consensus       616 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~-~~~~~~~~~~~  686 (721)
                      ++++|.||++.+++|||++++++|++ |++|||.++.+|+|+|...-|||+.+|..|+|. +...++++.+.
T Consensus       186 ~pGFi~NRl~~a~~~EA~~lv~eGva-s~edID~a~~~g~g~r~~~~Gpf~~~Dl~Gld~g~~~~~~~~g~~  256 (321)
T PRK07066        186 VPGFIADRLLEALWREALHLVNEGVA-TTGEIDDAIRFGAGIRWSFMGTFLTYTLAGGDAGMRHFMQQFGPA  256 (321)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCccCcCHHHHhhhcChHHHHHHHHHHhhhh
Confidence            58999999999999999999999999 999999999999999844459999999999997 33444544433

>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=98.94  E-value=8.3e-09  Score=99.85  Aligned_cols=146  Identities=23%  Similarity=0.284  Sum_probs=101.3

Q ss_pred             EEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHh
Q 004972           16 AIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE   95 (721)
Q Consensus        16 ~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~   95 (721)
                      .+|.++.    .+++...+.+.++++++++++ ++.||+.=.    |.|+++..                ...++ +.|.
T Consensus         2 ~vi~i~g----~I~~~~~~~l~~~l~~a~~~~-~~~ivl~in----spGG~v~~----------------~~~I~-~~l~   55 (178)
T cd07021           2 YVIPIEG----EIDPGLAAFVERALKEAKEEG-ADAVVLDID----TPGGRVDS----------------ALEIV-DLIL   55 (178)
T ss_pred             EEEEEee----EECHHHHHHHHHHHHHHHhCC-CCeEEEEEE----CcCCCHHH----------------HHHHH-HHHH
Confidence            4556654    366778888999999998776 777777422    22333322                22444 6688


Q ss_pred             hCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCccc----c---ccc------ccccc--CHHHHHHHH
Q 004972           96 DCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIP----G---TQR------LPRLV--GLSKAIEMM  160 (721)
Q Consensus        96 ~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P----~---~~~------l~r~~--G~~~a~~l~  160 (721)
                      .+++|+|+.|+|.|.++|+.++++||++++++++.||.++.-.+-..    .   ...      +.+.-  ....+..|+
T Consensus        56 ~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~v~~~~~~~~~~K~~~~~~~~~~~~A~~~gr~~~~a~~mv  135 (178)
T cd07021          56 NSPIPTIAYVNDRAASAGALIALAADEIYMAPGATIGAAEPIPGDGNGAADEKVQSYWRAKMRAAAEKKGRDPDIAEAMV  135 (178)
T ss_pred             hCCCCEEEEECCchHHHHHHHHHhCCeEEECCCCeEecCeeEcCCCccchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHh
Confidence            89999999999999999999999999999999999999865422111    1   000      11111  344455665


Q ss_pred             HcC-------------CCcCHHHHHHcCCccEEcCC-chHH
Q 004972          161 LLS-------------KSITSEEGWKLGLIDAVVTS-EELL  187 (721)
Q Consensus       161 ltg-------------~~~~a~eA~~~Glv~~vv~~-~~l~  187 (721)
                      -..             -.++++||++.|++|.+.+. ++|+
T Consensus       136 ~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~~~~ll  176 (178)
T cd07021         136 DKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGSLDELL  176 (178)
T ss_pred             hhhcccccccccccceeeeCHHHHHHhCCeEEEECCHHHHh
Confidence            544             27999999999999999853 4443

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=98.92  E-value=2.5e-09  Score=93.04  Aligned_cols=89  Identities=20%  Similarity=0.230  Sum_probs=69.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCC---CceEEE-eCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceec--cCcc
Q 004972          307 KVAVIGGGLMGSGIATAHILNN---IYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV--LDYS  380 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~~G---~~V~l~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~--~~~~  380 (721)
                      ||+|||+|.||.+|+..|.++|   ++|+++ +++++++++..++                      . ....+  +..+
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~----------------------~-~~~~~~~~~~~   57 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKE----------------------Y-GVQATADDNEE   57 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHH----------------------C-TTEEESEEHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHh----------------------h-ccccccCChHH
Confidence            7999999999999999999999   899955 9999998775321                      0 12222  3347


Q ss_pred             ccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCC
Q 004972          381 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  421 (721)
Q Consensus       381 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts  421 (721)
                      .++++|+||.|||  +....+++.++ ....++.+++|.+.
T Consensus        58 ~~~~advvilav~--p~~~~~v~~~i-~~~~~~~~vis~~a   95 (96)
T PF03807_consen   58 AAQEADVVILAVK--PQQLPEVLSEI-PHLLKGKLVISIAA   95 (96)
T ss_dssp             HHHHTSEEEE-S---GGGHHHHHHHH-HHHHTTSEEEEEST
T ss_pred             hhccCCEEEEEEC--HHHHHHHHHHH-hhccCCCEEEEeCC
Confidence            7889999999999  88888999999 66678888887654

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=98.91  E-value=6e-09  Score=94.60  Aligned_cols=114  Identities=16%  Similarity=0.153  Sum_probs=71.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEE-EeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVL-KEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l-~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  384 (721)
                      .||+|||+|.+|..++..|.++|++|.. +.++++..+++...                      .......+..+.+.+
T Consensus        11 l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~----------------------~~~~~~~~~~~~~~~   68 (127)
T PF10727_consen   11 LKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAF----------------------IGAGAILDLEEILRD   68 (127)
T ss_dssp             -EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC------------------------TT-----TTGGGCC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccc----------------------ccccccccccccccc
Confidence            5899999999999999999999999875 56777666654221                      112222333366899


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhh--CCCCeEEEecCCCCCHHHHhcccCCCCcEEEecC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKA--CPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHF  443 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~--~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~  443 (721)
                      +|+||++||++  ...++.++|...  ..++++|+-.+...+.+-+............+||
T Consensus        69 aDlv~iavpDd--aI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~~~Ga~~~s~HP  127 (127)
T PF10727_consen   69 ADLVFIAVPDD--AIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPARERGAIVASLHP  127 (127)
T ss_dssp             -SEEEE-S-CC--HHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHHHHTT-EEEEEEE
T ss_pred             CCEEEEEechH--HHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhHHHCCCeEEEeCc
Confidence            99999999966  567888999877  7788888754444555555554445555666775

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=98.83  E-value=1.2e-08  Score=109.13  Aligned_cols=108  Identities=19%  Similarity=0.156  Sum_probs=79.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCC--------CceEEEeC-----CHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCc
Q 004972          307 KVAVIGGGLMGSGIATAHILNN--------IYVVLKEV-----NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKML  373 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~~G--------~~V~l~d~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i  373 (721)
                      ||+|||+|.||+++|..++.+|        ++|++|.+     +++..+......+       ....+. .  -....++
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~-------n~~ylp-g--i~Lp~~i   70 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHE-------NVKYLP-G--IKLPANL   70 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCC-------CccccC-C--CcCCCCe
Confidence            6999999999999999999999        99999998     4443333221100       000010 0  0012457


Q ss_pred             eeccCc-cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH
Q 004972          374 KGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN  426 (721)
Q Consensus       374 ~~~~~~-~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~  426 (721)
                      .+++|+ +.+++||+||.+||  .+..+.+++++.++++++.++++.+.++...
T Consensus        71 ~at~dl~eal~~ADiIIlAVP--s~~i~~vl~~l~~~l~~~~~iVs~tKGie~~  122 (342)
T TIGR03376        71 VAVPDLVEAAKGADILVFVIP--HQFLEGICKQLKGHVKPNARAISCIKGLEVS  122 (342)
T ss_pred             EEECCHHHHHhcCCEEEEECC--hHHHHHHHHHHHhhcCCCCEEEEEeCCcccC
Confidence            788888 56799999999999  8999999999999999888888877766543

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.83  E-value=1.3e-08  Score=109.50  Aligned_cols=167  Identities=16%  Similarity=-0.000  Sum_probs=103.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCC-------CceEEEeCCHHH-----HHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCc
Q 004972          306 RKVAVIGGGLMGSGIATAHILNN-------IYVVLKEVNSEY-----LLKGIKTIEANVRGLVTRGKLTQDKANNALKML  373 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G-------~~V~l~d~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i  373 (721)
                      +||+|||+|.||+++|..++++|       ++|.+|.++++.     ++...+..       .....+..   -....++
T Consensus        12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~-------~N~~ylp~---~~Lp~ni   81 (365)
T PTZ00345         12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKH-------ENVKYLPG---IKLPDNI   81 (365)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcC-------CCcccCCC---CcCCCce
Confidence            58999999999999999999997       899999999863     33322110       01111110   0122568


Q ss_pred             eeccCc-cccCCCCEEEEcccCChHHHHHHHHHHHh--hCCCCeEEEecCCCCCH--------HHHhc-ccCCCCcEEE-
Q 004972          374 KGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEK--ACPPHCILATNTSTIDL--------NIVGE-KTSSQDRIIG-  440 (721)
Q Consensus       374 ~~~~~~-~~l~~aDlVIeavpe~~~~k~~v~~~l~~--~~~~~~ii~s~ts~~~i--------~~l~~-~~~~~~r~ig-  440 (721)
                      ..++|+ +++++||+||.+||  ++..+++++++.+  +++++++++|.+.++.+        +++.. .+..  ++.. 
T Consensus        82 ~~tsdl~eav~~aDiIvlAVP--sq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~--~~~~L  157 (365)
T PTZ00345         82 VAVSDLKEAVEDADLLIFVIP--HQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGI--PCCAL  157 (365)
T ss_pred             EEecCHHHHHhcCCEEEEEcC--hHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCC--CeEEE
Confidence            888887 57899999999999  9999999999998  77778788876665543        33322 2211  2211 


Q ss_pred             ecCCCCC---CCCCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCc
Q 004972          441 AHFFSPA---HVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG  488 (721)
Q Consensus       441 ~h~~~p~---~~~~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~g  488 (721)
                      .-|..+.   ...|..-++.+  .+.+..+.+..++..=..++....|..|
T Consensus       158 sGPs~A~Eva~~~pt~~vias--~~~~~a~~~~~lf~~~~frvy~s~Dv~G  206 (365)
T PTZ00345        158 SGANVANDVAREEFSEATIGC--EDKDDALIWQRLFDRPYFKINCVPDVIG  206 (365)
T ss_pred             ECCCHHHHHHcCCCcEEEEEe--CCHHHHHHHHHHhCCCcEEEEEcCCccc
Confidence            1111100   11111112222  2677777777777754455555566554

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.82  E-value=6.5e-08  Score=103.97  Aligned_cols=175  Identities=15%  Similarity=0.112  Sum_probs=104.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcc-cc-CC
Q 004972          307 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-EF-KD  384 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l-~~  384 (721)
                      ||+|||+|.||+.+|..|+++|++|++|+++++.++.......+     ..  .+..   ......+..+++.+ .+ .+
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~-----~~--~~~~---~~~~~~i~~~~~~~~~~~~~   71 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKN-----LK--YLPT---CHLPDNISVKSAIDEVLSDN   71 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCC-----cc--cCCC---CcCCCCeEEeCCHHHHHhCC
Confidence            79999999999999999999999999999999877664321000     00  0000   00112355566663 44 58


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHh-hCCCCeEEEecCCCCCH------HH-HhcccCCCCcEEEecCCCCC------CCC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEK-ACPPHCILATNTSTIDL------NI-VGEKTSSQDRIIGAHFFSPA------HVM  450 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~-~~~~~~ii~s~ts~~~i------~~-l~~~~~~~~r~ig~h~~~p~------~~~  450 (721)
                      +|+||.|||  .....++++++.+ ++++++.+++.++++..      ++ +...++. .++..  +..|-      ...
T Consensus        72 ~Dliiiavk--s~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~-~~~~~--~~Gp~~a~~~~~~~  146 (326)
T PRK14620         72 ATCIILAVP--TQQLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPN-NPIAI--LSGPSFAKEIAEKL  146 (326)
T ss_pred             CCEEEEEeC--HHHHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCC-CceEe--ecCCcHHHHHHcCC
Confidence            999999999  8888899999998 88888766666666533      22 3333322 12211  01111      111


Q ss_pred             CeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHH
Q 004972          451 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPY  498 (721)
Q Consensus       451 ~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~gfi~nRl~~~~  498 (721)
                      +..-.+.+  .+.+..+.+..++..-+..+....|..|...-.++...
T Consensus       147 ~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~~~Di~g~~~~k~~~N~  192 (326)
T PRK14620        147 PCSIVLAG--QNETLGSSLISKLSNENLKIIYSQDIIGVQIGAALKNI  192 (326)
T ss_pred             CcEEEEec--CCHHHHHHHHHHHCCCCeEEEecCcchhhhhHHHHHHH
Confidence            11001122  34555566666666656566666777776554444333

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=98.80  E-value=4.9e-08  Score=103.91  Aligned_cols=173  Identities=13%  Similarity=0.063  Sum_probs=101.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcc-ccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-EFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l~~  384 (721)
                      +||+|||+|.||+.+|..|+++|++|+++++ ++.++...+.   .+  .+....-     + ..-.....++.+ ...+
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~---g~--~~~~~~~-----~-~~~~~~~~~~~~~~~~~   68 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRER---GL--VIRSDHG-----D-AVVPGPVITDPEELTGP   68 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhC---Ce--EEEeCCC-----e-EEecceeecCHHHccCC
Confidence            3799999999999999999999999999999 7666553210   00  0000000     0 000112234443 3488


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH-HHHhcccCCCCcEE-EecC-----CCCCCCC---C-ee
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKTSSQDRII-GAHF-----FSPAHVM---P-LL  453 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i-~~l~~~~~~~~r~i-g~h~-----~~p~~~~---~-lv  453 (721)
                      +|+||.|++  .....++++++.+.++++++|++...++.. ..+...++ ..+++ |..+     ..|-.+.   . .+
T Consensus        69 ~d~vilavk--~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~~~~-~~~v~~g~~~~~~~~~~~g~v~~~~~~~~  145 (305)
T PRK12921         69 FDLVILAVK--AYQLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEPYFG-RERVLGGVVFISAQLNGDGVVVQRADHRL  145 (305)
T ss_pred             CCEEEEEec--ccCHHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHHhCC-cccEEEEEEEEEEEECCCeEEEEcCCCcE
Confidence            999999998  455677888898888888888776667654 34444443 22433 2332     2221110   0 01


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhh
Q 004972          454 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNR  493 (721)
Q Consensus       454 Eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~gfi~nR  493 (721)
                      .+-.-+....+..+.+...+...|..+....|........
T Consensus       146 ~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~K  185 (305)
T PRK12921        146 TFGEIPGQRSERTRAVRDALAGARLEVVLSENIRQDIWRK  185 (305)
T ss_pred             EEcCCCCCcCHHHHHHHHHHHhCCCCceecHHHHHHHHHH
Confidence            1111122234566777788888886666666654433333

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.79  E-value=1.8e-07  Score=91.06  Aligned_cols=183  Identities=14%  Similarity=0.125  Sum_probs=125.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc----cc
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----SE  381 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~----~~  381 (721)
                      ++|+.||+|.||..++..+.+.||+|+.||+++++++.+..           .+             ++..+++    +.
T Consensus         1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~-----------~g-------------a~~a~sl~el~~~   56 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKD-----------EG-------------ATGAASLDELVAK   56 (300)
T ss_pred             CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHh-----------cC-------------CccccCHHHHHHh
Confidence            47999999999999999999999999999999999887642           22             1112221    33


Q ss_pred             cCCCCEEEEcccCChH-HHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCe-------e
Q 004972          382 FKDVDMVIEAVIESVP-LKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPL-------L  453 (721)
Q Consensus       382 l~~aDlVIeavpe~~~-~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~l-------v  453 (721)
                      +..--.|-..||  .. +..++++++.+.+.++.+|++...+.--..+...-...+  .|+||++--..+..       .
T Consensus        57 L~~pr~vWlMvP--ag~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~--kgi~flD~GTSGG~~G~~~G~~  132 (300)
T COG1023          57 LSAPRIVWLMVP--AGDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAE--KGIHFLDVGTSGGVWGAERGYC  132 (300)
T ss_pred             cCCCcEEEEEcc--CCCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHh--cCCeEEeccCCCCchhhhcCce
Confidence            455678888998  44 788999999999999999997665533333322211112  27888653322211       1


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHcCC---eeEEEcC-CCch----hhhhhhhHH---HHHHHHHHHcC---CCHHHHHHHH
Q 004972          454 EIVRTERTSAQVILDLMTVGKIIKK---VPVVVGN-CTGF----AVNRAFFPY---SQSARLLVSLG---VDVFRIDSAI  519 (721)
Q Consensus       454 Eiv~~~~t~~e~~~~~~~l~~~lG~---~~v~v~d-~~gf----i~nRl~~~~---~~Ea~~l~~~G---v~~~~ID~a~  519 (721)
                      -.|.|   ++++++.+.++++.+-.   -..++++ ..|-    |-|-|=+.+   +.|.+.++++.   +|.++|-+++
T Consensus       133 lMiGG---~~~a~~~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW  209 (300)
T COG1023         133 LMIGG---DEEAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVW  209 (300)
T ss_pred             EEecC---cHHHHHHHHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence            13344   79999999999998765   3456654 3343    336664544   35899999884   4888888887

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=98.77  E-value=6.5e-07  Score=95.58  Aligned_cols=178  Identities=8%  Similarity=0.071  Sum_probs=106.5

Q ss_pred             CCceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcccc
Q 004972          303 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  382 (721)
Q Consensus       303 ~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l  382 (721)
                      +..+||+|||+|.||+.+|..|+++|++|+++.+++.  +....   +.+.-....+..       ....+..+++.+.+
T Consensus         3 ~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~---~g~~~~~~~~~~-------~~~~~~~~~~~~~~   70 (313)
T PRK06249          3 SETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVRE---NGLQVDSVHGDF-------HLPPVQAYRSAEDM   70 (313)
T ss_pred             CcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHh---CCeEEEeCCCCe-------eecCceEEcchhhc
Confidence            3456899999999999999999999999999999863  22110   000000000100       00112334444556


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHH-HhcccCCCCcEEE-ecC-----CCCCC---CCC-
Q 004972          383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI-VGEKTSSQDRIIG-AHF-----FSPAH---VMP-  451 (721)
Q Consensus       383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~-l~~~~~~~~r~ig-~h~-----~~p~~---~~~-  451 (721)
                      ..+|+||.||+  .....++++.+.+.+.+++++++...++...+ +...++ ++++++ ..+     ..|..   ... 
T Consensus        71 ~~~D~vilavK--~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~~-~~~v~~g~~~~~a~~~~pg~v~~~~~g  147 (313)
T PRK06249         71 PPCDWVLVGLK--TTANALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREILP-AEHLLGGLCFICSNRVGPGVIHHLAYG  147 (313)
T ss_pred             CCCCEEEEEec--CCChHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHCC-CCcEEEEeeeEeEecCCCeEEEECCCC
Confidence            78999999998  33346788889898988888888777877654 444443 345443 222     22221   100 


Q ss_pred             eeEEecCCCCC-----HHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhh
Q 004972          452 LLEIVRTERTS-----AQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAF  495 (721)
Q Consensus       452 lvEiv~~~~t~-----~e~~~~~~~l~~~lG~~~v~v~d~~gfi~nRl~  495 (721)
                      -+.+-.....+     .+.++.+..+++..|-.+.+..|....+..+++
T Consensus       148 ~~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~  196 (313)
T PRK06249        148 RVNLGYHSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLV  196 (313)
T ss_pred             cEEEecCCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhh
Confidence            01111111112     466777888888888887777776655554443

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=98.73  E-value=3e-08  Score=104.91  Aligned_cols=123  Identities=17%  Similarity=0.266  Sum_probs=79.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  384 (721)
                      +||+|||+|.||+++|..++..|+ +|+++|++++..+ +..  .+..+    .+     .......+++++++++.+++
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~-g~a--~d~~~----~~-----~~~~~~~~i~~t~d~~~~~~   69 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQ-GKA--LDMYE----AS-----PVGGFDTKVTGTNNYADTAN   69 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhH-HHH--Hhhhh----hh-----hccCCCcEEEecCCHHHhCC
Confidence            489999999999999999999887 8999999876433 221  01111    11     00111246888888877999


Q ss_pred             CCEEEEccc--------------CChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccC-CCCcEEEe
Q 004972          385 VDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS-SQDRIIGA  441 (721)
Q Consensus       385 aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~-~~~r~ig~  441 (721)
                      ||+||.+++              .|..+.+++.+++.++.+ +++++..|..  .....+..... .+.|++|+
T Consensus        70 aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p-~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~  142 (305)
T TIGR01763        70 SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSP-NPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQ  142 (305)
T ss_pred             CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEecCcHHHHHHHHHHHHCcCHHHEEEe
Confidence            999999997              255677777788888864 5555443433  22222323322 34566664

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=98.72  E-value=1.3e-07  Score=100.54  Aligned_cols=112  Identities=17%  Similarity=0.092  Sum_probs=77.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  385 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  385 (721)
                      +||+|||+|.||+.+|..|+++|++|++++++++..+...+.-   +  .+..+.        ....+..+++.+.+.++
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g---~--~~~~~~--------~~~~~~~~~~~~~~~~~   67 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENG---L--RLEDGE--------ITVPVLAADDPAELGPQ   67 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcC---C--cccCCc--------eeecccCCCChhHcCCC
Confidence            3799999999999999999999999999999887766543210   0  000110        00112233444445899


Q ss_pred             CEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH-HHHhccc
Q 004972          386 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKT  432 (721)
Q Consensus       386 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i-~~l~~~~  432 (721)
                      |+||.|++  ......+++++.+.+.++++|++...++.. ..+...+
T Consensus        68 d~vila~k--~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~~~  113 (304)
T PRK06522         68 DLVILAVK--AYQLPAALPSLAPLLGPDTPVLFLQNGVGHLEELAAYI  113 (304)
T ss_pred             CEEEEecc--cccHHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHHhc
Confidence            99999998  445678889999988888877777777664 3444444

>PRK06444 prephenate dehydrogenase; Provisional

Probab=98.69  E-value=2.7e-07  Score=90.62  Aligned_cols=114  Identities=11%  Similarity=0.044  Sum_probs=84.4

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  384 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  384 (721)
                      +||+|||+ |.||.-++..|.++|+.|+                                                 +++
T Consensus         1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~-------------------------------------------------~~~   31 (197)
T PRK06444          1 MMEIIIGKNGRLGRVLCSILDDNGLGVY-------------------------------------------------IKK   31 (197)
T ss_pred             CEEEEEecCCcHHHHHHHHHHhCCCEEE-------------------------------------------------ECC
Confidence            38999999 9999999999999999985                                                 146


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCC-----CeeEEecCC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVM-----PLLEIVRTE  459 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~-----~lvEiv~~~  459 (721)
                      ||+||.|+|  .....++++++.      .+|++.+|...  .+.+.   ..+|+|.||...|...     ..+-+ ..+
T Consensus        32 ~DlVilavP--v~~~~~~i~~~~------~~v~Dv~SvK~--~i~~~---~~~~vg~HPMfGp~~a~~~lf~~~iv-~~~   97 (197)
T PRK06444         32 ADHAFLSVP--IDAALNYIESYD------NNFVEISSVKW--PFKKY---SGKIVSIHPLFGPMSYNDGVHRTVIF-IND   97 (197)
T ss_pred             CCEEEEeCC--HHHHHHHHHHhC------CeEEeccccCH--HHHHh---cCCEEecCCCCCCCcCcccccceEEE-ECC
Confidence            899999999  777777777664      25767666544  22222   3479999997654332     22223 466


Q ss_pred             CCCHHHHHHHHHHHHHcCCeeEEEc
Q 004972          460 RTSAQVILDLMTVGKIIKKVPVVVG  484 (721)
Q Consensus       460 ~t~~e~~~~~~~l~~~lG~~~v~v~  484 (721)
                      .++++.++.+..+++  |..++.+.
T Consensus        98 ~~~~~~~~~~~~l~~--G~~~~~~t  120 (197)
T PRK06444         98 ISRDNYLNEINEMFR--GYHFVEMT  120 (197)
T ss_pred             CCCHHHHHHHHHHHc--CCEEEEeC
Confidence            788899999999998  88887773

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.64  E-value=5.7e-07  Score=93.81  Aligned_cols=208  Identities=13%  Similarity=0.106  Sum_probs=136.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc----cc
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----SE  381 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~----~~  381 (721)
                      ..|||||+|.||+.+|.+++++|+.|.+|+|+.++.+...+.       ... +           ..|..+.++    +.
T Consensus         4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~-------~~~-~-----------k~i~~~~sieefV~~   64 (473)
T COG0362           4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAE-------RAK-G-----------KNIVPAYSIEEFVAS   64 (473)
T ss_pred             cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHh-------Ccc-C-----------CCccccCcHHHHHHH
Confidence            569999999999999999999999999999999998875431       111 1           134444444    33


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHh--cc-cCCCCcEEEecCC-------CCCCCCC
Q 004972          382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG--EK-TSSQDRIIGAHFF-------SPAHVMP  451 (721)
Q Consensus       382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~--~~-~~~~~r~ig~h~~-------~p~~~~~  451 (721)
                      ++.---|++.|--- .....++++|.+++.++.|+++...+.-..++.  .. ....-.|+|+---       +.|.   
T Consensus        65 Le~PRkI~lMVkAG-~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPS---  140 (473)
T COG0362          65 LEKPRKILLMVKAG-TPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPS---  140 (473)
T ss_pred             hcCCceEEEEEecC-CcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCC---
Confidence            55667777777533 334688899999999999999866553333222  22 2233457776542       2333   


Q ss_pred             eeEEecCCCCCHHHHHHHHHHHHHcCCee------EEEc-CCCchhh----hhhhh---HHHHHHHHHHHc--CCCHHHH
Q 004972          452 LLEIVRTERTSAQVILDLMTVGKIIKKVP------VVVG-NCTGFAV----NRAFF---PYSQSARLLVSL--GVDVFRI  515 (721)
Q Consensus       452 lvEiv~~~~t~~e~~~~~~~l~~~lG~~~------v~v~-d~~gfi~----nRl~~---~~~~Ea~~l~~~--Gv~~~~I  515 (721)
                         |+||  .++++.+.+.++++.+..+.      .+++ +..|-.+    |-|=+   .++.|++.++.+  |+|.++|
T Consensus       141 ---iMpG--G~~eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei  215 (473)
T COG0362         141 ---IMPG--GQKEAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEI  215 (473)
T ss_pred             ---cCCC--CCHHHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence               4555  48999999999999875432      3343 4555443    55533   356799999988  4599999


Q ss_pred             HHHHHhcCCCccHHHHHHhhchHHHHHHHHH
Q 004972          516 DSAIRSFGLPIGPFQLLDLAGYGVAAATSKE  546 (721)
Q Consensus       516 D~a~~~~G~p~Gpf~~~D~~Gld~~~~~~~~  546 (721)
                      -.++..+.-  |.+   |..=+++..+++..
T Consensus       216 ~~vF~~WN~--geL---~SYLIeIT~~IL~~  241 (473)
T COG0362         216 AEVFEEWNK--GEL---DSYLIEITADILRK  241 (473)
T ss_pred             HHHHHHhcc--Ccc---hHHHHHHHHHHHhh
Confidence            999854432  322   22334555555543

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=98.62  E-value=7.5e-08  Score=100.08  Aligned_cols=99  Identities=29%  Similarity=0.377  Sum_probs=76.7

Q ss_pred             EEEEcC-CCCcHHHHHHHHHCC----CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccC-ccc
Q 004972          308 VAVIGG-GLMGSGIATAHILNN----IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD-YSE  381 (721)
Q Consensus       308 I~VIG~-G~mG~~iA~~la~~G----~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~  381 (721)
                      |+|||+ |.||.++|..++..|    .+|+++|+++++++.....+++.....             ...+++.++| +++
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-------------~~~~i~~~~d~~~~   67 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPL-------------ADIKVSITDDPYEA   67 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhc-------------cCcEEEECCchHHH
Confidence            689999 999999999999999    699999999988777555444332211             0135777777 488


Q ss_pred             cCCCCEEEE--------------cccCChHHHHHHHHHHHhhCCCCeEEEecC
Q 004972          382 FKDVDMVIE--------------AVIESVPLKQKIFSELEKACPPHCILATNT  420 (721)
Q Consensus       382 l~~aDlVIe--------------avpe~~~~k~~v~~~l~~~~~~~~ii~s~t  420 (721)
                      +++||+||+              .+.++..+++++.+++.+++ ++++++..|
T Consensus        68 ~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~t  119 (263)
T cd00650          68 FKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVVS  119 (263)
T ss_pred             hCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEec
Confidence            999999999              66678889999999999998 555555433

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=98.59  E-value=5.4e-07  Score=86.28  Aligned_cols=146  Identities=24%  Similarity=0.295  Sum_probs=104.4

Q ss_pred             EEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHh
Q 004972           16 AIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE   95 (721)
Q Consensus        16 ~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~   95 (721)
                      .+|.++.    .+++.+..-|.+.++.++++ +++.|+|.=.    |.|+++...                ..++ +.|.
T Consensus         2 ~vi~i~G----~I~~~~~~~l~~~l~~A~~~-~~~~i~l~in----SPGG~v~~~----------------~~I~-~~i~   55 (172)
T cd07015           2 YVAQIKG----QITSYTYDQFDRYITIAEQD-NAEAIIIELD----TPGGRADAA----------------GNIV-QRIQ   55 (172)
T ss_pred             EEEEEee----EECHhHHHHHHHHHHHHhcC-CCCeEEEEEE----CCCCCHHHH----------------HHHH-HHHH
Confidence            3455543    36677788889999988765 5777777532    334433321                2344 5577


Q ss_pred             hCCCcEEEEEC---CcccccchHhhhhcCEEEeeCCceEeCcccccCccc-------c----cc------ccccccC--H
Q 004972           96 DCKKPIVAAVE---GLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIP-------G----TQ------RLPRLVG--L  153 (721)
Q Consensus        96 ~~~~p~Iaav~---G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P-------~----~~------~l~r~~G--~  153 (721)
                      ..++||++.|+   |.|..+|.-++++||.+++.+++.++....-.|.-+       +    ..      -+.+.-|  .
T Consensus        56 ~~~~pvv~~v~p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~~  135 (172)
T cd07015          56 QSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRNA  135 (172)
T ss_pred             hcCcCEEEEEecCCCeehhHHHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHCcCH
Confidence            88999999999   999999999999999999999999999876433212       1    11      1222233  5


Q ss_pred             HHHHHHHHcCCCcCHHHHHHcCCccEEcCC-chHH
Q 004972          154 SKAIEMMLLSKSITSEEGWKLGLIDAVVTS-EELL  187 (721)
Q Consensus       154 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~  187 (721)
                      ..+..++.....++|+||++.|++|.++.. ++|+
T Consensus       136 ~~a~~~v~~~~~lta~EA~~~G~iD~ia~~~~~ll  170 (172)
T cd07015         136 TIAEEFITKDLSLTPEEALKYGVIEVVARDINELL  170 (172)
T ss_pred             HHHHHHHHhhcCcCHHHHHHcCCceeeeCCHHHHh
Confidence            567788888899999999999999999854 4443

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle

>TIGR00112 proC pyrroline-5-carboxylate reductase

Probab=98.50  E-value=3.1e-06  Score=86.87  Aligned_cols=165  Identities=15%  Similarity=0.096  Sum_probs=118.4

Q ss_pred             CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCCCCEEEEcccCChHHHHHHHHHHH
Q 004972          329 IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELE  407 (721)
Q Consensus       329 ~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~aDlVIeavpe~~~~k~~v~~~l~  407 (721)
                      ++|++++|++++++...+.                      ++ +..+++. +.+.+||+||.||+  +....+++.++.
T Consensus        10 ~~I~v~~R~~e~~~~l~~~----------------------~g-~~~~~~~~e~~~~aDiIiLaVk--P~~i~~vl~~l~   64 (245)
T TIGR00112        10 YDIIVINRSPEKLAALAKE----------------------LG-IVASSDAQEAVKEADVVFLAVK--PQDLEEVLSELK   64 (245)
T ss_pred             CeEEEEcCCHHHHHHHHHH----------------------cC-cEEeCChHHHHhhCCEEEEEeC--HHHHHHHHHHHh
Confidence            5899999999886654211                      11 2233343 45688999999999  888889999998


Q ss_pred             hhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEe-cCCCCCHHHHHHHHHHHHHcCCeeEEEcCC
Q 004972          408 KACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RTERTSAQVILDLMTVGKIIKKVPVVVGNC  486 (721)
Q Consensus       408 ~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv-~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~  486 (721)
                      +.+.++.+|+|...++++.++...++...+++.+.|+.|......+..+ .++..+++..+.+..++..+|....+- |.
T Consensus        65 ~~~~~~~~ivS~~agi~~~~l~~~~~~~~~ivR~mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v~-E~  143 (245)
T TIGR00112        65 SEKGKDKLLISIAAGVTLEKLSQLLGGTRRVVRVMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVELP-EA  143 (245)
T ss_pred             hhccCCCEEEEecCCCCHHHHHHHcCCCCeEEEECCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEEC-HH
Confidence            8777778999999999999999888755679999999988887777666 567788899999999999999777542 21


Q ss_pred             --Cchhh-hhh---hhHHHHHHH--HHHHcCCCHHHHHHHH
Q 004972          487 --TGFAV-NRA---FFPYSQSAR--LLVSLGVDVFRIDSAI  519 (721)
Q Consensus       487 --~gfi~-nRl---~~~~~~Ea~--~l~~~Gv~~~~ID~a~  519 (721)
                        ..+.+ .-.   ++.++.|++  ..+..|+++++-.+.+
T Consensus       144 ~~~~~talsgsgPA~~~~~~~al~~~~v~~Gl~~~~A~~lv  184 (245)
T TIGR00112       144 LMDAVTALSGSGPAYVFLFIEALADAGVKQGLPRELALELA  184 (245)
T ss_pred             HcchHHhhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence              11111 001   112233333  3445689888887776

This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=98.46  E-value=8.6e-07  Score=82.76  Aligned_cols=103  Identities=23%  Similarity=0.296  Sum_probs=70.4

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcccc
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  382 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l  382 (721)
                      +||+|||+ |.+|..+|..+...++  +++++|++++.++.....+++.......             .......+++++
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~-------------~~~i~~~~~~~~   67 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPS-------------PVRITSGDYEAL   67 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTE-------------EEEEEESSGGGG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccc-------------cccccccccccc
Confidence            48999999 9999999999999876  8999999998766544444332221111             112223667899


Q ss_pred             CCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972          383 KDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTST  422 (721)
Q Consensus       383 ~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~  422 (721)
                      ++||+||.+.-.              +..+.+++..++.++. ++.+++..|..
T Consensus        68 ~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvtNP  120 (141)
T PF00056_consen   68 KDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVTNP  120 (141)
T ss_dssp             TTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-SSS
T ss_pred             ccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeCCc
Confidence            999999988732              3446666777788887 45555544443

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=98.46  E-value=5e-07  Score=96.60  Aligned_cols=100  Identities=15%  Similarity=0.039  Sum_probs=76.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|+|||+|.||.++|..+...|++|++||++++.....                            +...+++ +.+++
T Consensus       147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----------------------------~~~~~~l~ell~~  198 (330)
T PRK12480        147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF----------------------------LTYKDSVKEAIKD  198 (330)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh----------------------------hhccCCHHHHHhc
Confidence            479999999999999999999999999999987542110                            1123344 56799


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH--HHHhcccC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS  433 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i--~~l~~~~~  433 (721)
                      ||+|+.++|...+....+.+++.+.++++++|+..+-+..+  ..+.+.+.
T Consensus       199 aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~  249 (330)
T PRK12480        199 ADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVN  249 (330)
T ss_pred             CCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHH
Confidence            99999999988887777778888889999988865555443  45555553

>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=98.44  E-value=9e-08  Score=99.29  Aligned_cols=164  Identities=16%  Similarity=0.140  Sum_probs=127.3

Q ss_pred             CcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcCCCCchhhhhccCCCcccccchHHHHHHH
Q 004972           13 DGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVSLMPDVSVELVV   91 (721)
Q Consensus        13 ~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~   91 (721)
                      .+++.+.++ |+.|..|.++.++|..-++.+..+..+++..+|+.. +.|++|.|..++.-... .........+++++ 
T Consensus        65 ~~~~~~dmv-ieav~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h-~fspa~~m~LlEii-  141 (380)
T KOG1683|consen   65 TGFANADMV-IEAVFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMH-FFSPAHWMQLLEII-  141 (380)
T ss_pred             cccccccee-ccchhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhcccc-ccCHHHHHHHHHHH-
Confidence            478888887 889999999999999999999999889999998876 67999999988754221 11111222345666 


Q ss_pred             HHHhhCCCcEEEEECCcccccc--hHhhhhcCEEEee--CCceEeCcccccCc-ccc------ccccccccCHHHHHHHH
Q 004972           92 NLIEDCKKPIVAAVEGLALGGG--LELAMGCHARIAA--PKTQLGLPELTLGV-IPG------TQRLPRLVGLSKAIEMM  160 (721)
Q Consensus        92 ~~l~~~~~p~Iaav~G~a~GgG--~~lalacD~ria~--~~a~~~~pe~~~Gl-~P~------~~~l~r~~G~~~a~~l~  160 (721)
                      ....+++.|+.+|+||++--|+  |-++.+|+||+..  ..-..+..+..+++ .|.      +.-++..+|+    .-+
T Consensus       142 ~~~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~----~~L  217 (380)
T KOG1683|consen  142 LALYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGE----RAL  217 (380)
T ss_pred             HhcCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccH----HHH
Confidence            5678999999999999999888  8999999999998  55455778887773 332      3344555554    445


Q ss_pred             HcCCCcCHHHHHHcCCccEEcCC
Q 004972          161 LLSKSITSEEGWKLGLIDAVVTS  183 (721)
Q Consensus       161 ltg~~~~a~eA~~~Glv~~vv~~  183 (721)
                      --+.-++..||++-|+++++.|.
T Consensus       218 ~d~~gfdv~eal~~gl~~~~~~r  240 (380)
T KOG1683|consen  218 ADGVGFDVAEALAVGLGDEIGPR  240 (380)
T ss_pred             hhccCccHHHHHhhccchhccch
Confidence            66778999999999999999985

>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]

Probab=98.37  E-value=6.5e-06  Score=81.05  Aligned_cols=147  Identities=16%  Similarity=0.113  Sum_probs=97.2

Q ss_pred             cHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceecc-CccccCCCCEEEEcccCC
Q 004972          317 GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-DYSEFKDVDMVIEAVIES  395 (721)
Q Consensus       317 G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~l~~aDlVIeavpe~  395 (721)
                      |+.||..++.+||+|++.|.+.+-.+...      ++..-+.             .+..++ |.++++.+.+.|+-.|-.
T Consensus        33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~------w~~vedA-------------GV~vv~dD~eaa~~~Ei~VLFTPFG   93 (340)
T COG4007          33 GARMAIEFAEAGHDVVLAEPNRDIMDDEH------WKRVEDA-------------GVEVVSDDAEAAEHGEIHVLFTPFG   93 (340)
T ss_pred             chHHHHHHHHcCCcEEeecCCccccCHHH------HHHHHhc-------------CcEEecCchhhhhcceEEEEecccc
Confidence            78899999999999999999877655421      1111112             244444 458899999999998833


Q ss_pred             hHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHH----hcccCCCCcEEEecCCCCCCC----CCeeEEecCCCC------
Q 004972          396 VPLKQKIFSELEKACPPHCILATNTSTIDLNIV----GEKTSSQDRIIGAHFFSPAHV----MPLLEIVRTERT------  461 (721)
Q Consensus       396 ~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l----~~~~~~~~r~ig~h~~~p~~~----~~lvEiv~~~~t------  461 (721)
                      . ..-.+.++|.++++.+++|. ||.+.++-.+    ...+..+.+-+|+..+.|.-+    ....-++.+..+      
T Consensus        94 k-~T~~Iarei~~hvpEgAVic-nTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~h~~yviagr~t~g~elA  171 (340)
T COG4007          94 K-ATFGIAREILEHVPEGAVIC-NTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQHGHYVIAGRSTEGKELA  171 (340)
T ss_pred             h-hhHHHHHHHHhhCcCCcEec-ccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCCCceEEEeccCCCceeec
Confidence            1 44577788999999999874 5655554333    333344444455554444421    111224443333      


Q ss_pred             CHHHHHHHHHHHHHcCCeeEEEc
Q 004972          462 SAQVILDLMTVGKIIKKVPVVVG  484 (721)
Q Consensus       462 ~~e~~~~~~~l~~~lG~~~v~v~  484 (721)
                      ++|.++++.++++..||.+.++.
T Consensus       172 TeEQi~r~velaes~Gk~~yv~p  194 (340)
T COG4007         172 TEEQIERCVELAESTGKEVYVLP  194 (340)
T ss_pred             cHHHHHHHHHHHHhcCCceEecC
Confidence            78999999999999999998873

>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=98.35  E-value=1.5e-06  Score=83.13  Aligned_cols=132  Identities=17%  Similarity=0.149  Sum_probs=94.4

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEECC
Q 004972           28 LAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEG  107 (721)
Q Consensus        28 l~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav~G  107 (721)
                      ++..+.+++.+.|..++.++..+.|+|.=.    |.|+++.                ....++ +.|..+++|+++.+.|
T Consensus         9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~In----SpGG~v~----------------~~~~i~-~~i~~~~~~v~~~~~g   67 (162)
T cd07013           9 VEDISANQFAAQLLFLGAVNPEKDIYLYIN----SPGGDVF----------------AGMAIY-DTIKFIKADVVTIIDG   67 (162)
T ss_pred             ECcHHHHHHHHHHHHHhcCCCCCCEEEEEE----CCCCcHH----------------HHHHHH-HHHHhcCCCceEEEEe
Confidence            567888999999999998877777777422    2333321                122444 6677889999999999


Q ss_pred             cccccchHhhhhcC--EEEeeCCceEeCcccccCcccc---c---------------cccccc--cCHHHHHHHHHcCCC
Q 004972          108 LALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPG---T---------------QRLPRL--VGLSKAIEMMLLSKS  165 (721)
Q Consensus       108 ~a~GgG~~lalacD--~ria~~~a~~~~pe~~~Gl~P~---~---------------~~l~r~--~G~~~a~~l~ltg~~  165 (721)
                      .|.++|.-++++||  .|++.++++|.+....-+....   .               ..+.+.  .......+++-.+..
T Consensus        68 ~aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~  147 (162)
T cd07013          68 LAASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLERDTW  147 (162)
T ss_pred             ehhhHHHHHHHcCCCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCCcc
Confidence            99999999999999  6999999999875543222111   0               111222  235555677777788


Q ss_pred             cCHHHHHHcCCccEE
Q 004972          166 ITSEEGWKLGLIDAV  180 (721)
Q Consensus       166 ~~a~eA~~~Glv~~v  180 (721)
                      ++|+||+++||||++
T Consensus       148 ~sa~eA~~~GliD~i  162 (162)
T cd07013         148 LSAREAVEYGFADTI  162 (162)
T ss_pred             ccHHHHHHcCCCCcC
Confidence            899999999999975

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=98.35  E-value=9.3e-07  Score=87.55  Aligned_cols=104  Identities=19%  Similarity=0.268  Sum_probs=72.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCC---HHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc--
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN---SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY--  379 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--  379 (721)
                      .||+|||+|.||+.+|..|++.|+ +++++|.+   ++.+.+-...       .-.-|+...+.+...+.++....+.  
T Consensus        22 ~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~-------~~~iG~~Ka~~~~~~l~~inp~~~i~~   94 (200)
T TIGR02354        22 ATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYK-------ASQVGEPKTEALKENISEINPYTEIEA   94 (200)
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCC-------hhhCCCHHHHHHHHHHHHHCCCCEEEE
Confidence            589999999999999999999999 69999999   6665541100       0112222223333344333332222  


Q ss_pred             -----------cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEE
Q 004972          380 -----------SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA  417 (721)
Q Consensus       380 -----------~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~  417 (721)
                                 +.++++|+||+| .++...+..++.++....+...++.
T Consensus        95 ~~~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~  142 (200)
T TIGR02354        95 YDEKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIA  142 (200)
T ss_pred             eeeeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEE
Confidence                       236789999999 6899999999999988877766665

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.33  E-value=2e-06  Score=91.62  Aligned_cols=85  Identities=13%  Similarity=0.089  Sum_probs=77.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHh---CHHHHHHHHHHHHHhhCC-CCC
Q 004972          617 EKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAV---GANYVYTSLKKWSQLYGN-FFK  692 (721)
Q Consensus       617 ~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~---G~~~~~~~~~~~~~~~~~-~~~  692 (721)
                      ++++.||++.++++||+.++++|++ |+++||.++..|+|+|...-|||+++|..   |++.+......++...++ ++.
T Consensus       186 ~G~i~nrl~~a~~~EA~~l~~~g~~-~~~~id~~~~~~~g~~~~~~gp~~~~d~~~~~g~~~~~~k~~~l~~~~~~~~~~  264 (308)
T PRK06129        186 DGFVLNRLQGALLREAFRLVADGVA-SVDDIDAVIRDGLGLRWSFMGPFETIDLNAPGGVADYAQRYGPMYRRMAAERGQ  264 (308)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhccCCCccCcCHHHHHhccccccHHHHHHHHHHHHHhhccccCC
Confidence            5789999999999999999999999 99999999999999884445999999987   999999999999888876 888


Q ss_pred             CCHHHHHHHH
Q 004972          693 PSRFLEERAT  702 (721)
Q Consensus       693 p~~~l~~~~~  702 (721)
                      |+|+++++++
T Consensus       265 ~~~~~~~~~~  274 (308)
T PRK06129        265 PVPWDGELVA  274 (308)
T ss_pred             CchhhHHHHH
Confidence            9999998884

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=98.32  E-value=5.3e-05  Score=80.19  Aligned_cols=166  Identities=14%  Similarity=0.088  Sum_probs=102.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  385 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  385 (721)
                      +||+|+|+|.||+-++..|+++|++|+++-|++. +++.++           .|..-.............+.+.+.+..+
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~-----------~GL~i~~~~~~~~~~~~~~~~~~~~~~~   68 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKK-----------KGLRIEDEGGNFTTPVVAATDAEALGPA   68 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHh-----------CCeEEecCCCccccccccccChhhcCCC
Confidence            4899999999999999999999988999888876 555432           1211000000000112223334567799


Q ss_pred             CEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHH-HhcccCCCCcEEEecCCCCCCCCCeeEEec-------
Q 004972          386 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI-VGEKTSSQDRIIGAHFFSPAHVMPLLEIVR-------  457 (721)
Q Consensus       386 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~-l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~-------  457 (721)
                      |+||.++-  .-...+.++.+.++++++++|++...++...+ +....+...-+.|+-+.......+..-...       
T Consensus        69 Dlviv~vK--a~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~i  146 (307)
T COG1893          69 DLVIVTVK--AYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVI  146 (307)
T ss_pred             CEEEEEec--cccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEE
Confidence            99999885  66777899999999999998888888877665 344443332344444433333322211111       


Q ss_pred             --CCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004972          458 --TERTSAQVILDLMTVGKIIKKVPVVVGN  485 (721)
Q Consensus       458 --~~~t~~e~~~~~~~l~~~lG~~~v~v~d  485 (721)
                        .....++.++.+.+.++..|-...+..|
T Consensus       147 g~~~~~~~~~~~~i~~~~~~a~~~~~~~~d  176 (307)
T COG1893         147 GELRGGRDELVKALAELFKEAGLEVELHPD  176 (307)
T ss_pred             ccCCCCchHHHHHHHHHHHhCCCCeEEcHH
Confidence              1112336677777777666665555433

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=98.32  E-value=1.1e-06  Score=93.31  Aligned_cols=101  Identities=25%  Similarity=0.308  Sum_probs=69.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCC--CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  383 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  383 (721)
                      +||+|||+|.+|+++|..++..|  ++|+++|++++.++.....+.+....... .           ..+. +.++++++
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~-~-----------~~i~-~~~~~~l~   67 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPS-P-----------VKIK-AGDYSDCK   67 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCC-C-----------eEEE-cCCHHHhC
Confidence            48999999999999999999999  58999999998876654433322110000 0           0122 35567789


Q ss_pred             CCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCeEEEecC
Q 004972          384 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT  420 (721)
Q Consensus       384 ~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~t  420 (721)
                      +||+||.+...              +..+.+++..++.++.+ +++++..|
T Consensus        68 ~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~-~~~vivvs  117 (306)
T cd05291          68 DADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGF-DGIFLVAS  117 (306)
T ss_pred             CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEec
Confidence            99999999853              34456777777888776 55554434

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK10949 protease 4; Provisional

Probab=98.32  E-value=4e-06  Score=96.18  Aligned_cols=159  Identities=20%  Similarity=0.239  Sum_probs=105.2

Q ss_pred             cCcEEEEEeCCC----C--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchH
Q 004972           12 NDGVAIITLINP----P--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV   85 (721)
Q Consensus        12 ~~~v~~i~l~~p----~--~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~   85 (721)
                      .+.|++|+++..    +  .+.++.   +.+.+.++++..|++||+|||+-.    |.|+....             .+.
T Consensus       325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrIn----SpGGs~~a-------------se~  384 (618)
T PRK10949        325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVN----SPGGSVTA-------------SEV  384 (618)
T ss_pred             CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEec----CCCCcHHH-------------HHH
Confidence            467999998653    1  233443   567888899999999999999754    22222111             011


Q ss_pred             HHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCccc------------ccCcccc---ccc----
Q 004972           86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPEL------------TLGVIPG---TQR----  146 (721)
Q Consensus        86 ~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~------------~~Gl~P~---~~~----  146 (721)
                      ..+.+ ..++...||+||.+.|.|..||.-++++||.++|.+.+..|...+            ++|+-+.   +..    
T Consensus       385 i~~~i-~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~  463 (618)
T PRK10949        385 IRAEL-AAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADV  463 (618)
T ss_pred             HHHHH-HHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCc
Confidence            22333 335667899999999999999999999999999998777665332            1333221   000    


Q ss_pred             ------------------------------cccccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHH
Q 004972          147 ------------------------------LPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRL  192 (721)
Q Consensus       147 ------------------------------l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~  192 (721)
                                                    -.|-+..... +-+..|+.+++++|++.||||++-..++..+.+.+
T Consensus       464 ~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v-~~ia~Grv~tg~~A~~~GLVD~lG~~~~ai~~a~~  538 (618)
T PRK10949        464 SITKALPPEFQQMMQLSIENGYKRFITLVADSRHKTPEQI-DKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAE  538 (618)
T ss_pred             cccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHH-HHHhcCCcccHHHHHHcCCCccCCCHHHHHHHHHH
Confidence                                          0122233332 33568999999999999999999875555544444

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=98.28  E-value=4.3e-06  Score=88.85  Aligned_cols=175  Identities=11%  Similarity=-0.012  Sum_probs=101.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  385 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  385 (721)
                      +||+|||+|.||+-+|..|+++|++|+++++..+.++...+.  +.+. ....+...       .-.+.. .+.+....+
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~--~Gl~-i~~~g~~~-------~~~~~~-~~~~~~~~~   71 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQA--GGLT-LVEQGQAS-------LYAIPA-ETADAAEPI   71 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhc--CCeE-EeeCCcce-------eeccCC-CCccccccc
Confidence            479999999999999999999999999999988776654320  0000 00011000       000111 111334678


Q ss_pred             CEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHH-HhcccCCCCcEE-EecCCCCCCCCCe-e------EEe
Q 004972          386 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI-VGEKTSSQDRII-GAHFFSPAHVMPL-L------EIV  456 (721)
Q Consensus       386 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~-l~~~~~~~~r~i-g~h~~~p~~~~~l-v------Eiv  456 (721)
                      |+||.|+-  .....+.++++.+++.+++.+++...++...+ +...+.. ++++ |..++......|. +      .+.
T Consensus        72 D~viv~vK--~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~~~-~~v~~g~~~~ga~~~~pg~v~~~~~g~~~  148 (305)
T PRK05708         72 HRLLLACK--AYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAARVPH-ARCIFASSTEGAFRDGDWRVVFAGHGFTW  148 (305)
T ss_pred             CEEEEECC--HHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhCCC-CcEEEEEeeeceecCCCCEEEEeceEEEE
Confidence            99999985  55556788899999999998888888877654 4444433 3333 3333221111111 0      111


Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhh
Q 004972          457 RTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAF  495 (721)
Q Consensus       457 ~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~gfi~nRl~  495 (721)
                      -|.. +.+..+.+.+++...|....+..|..+.+.+.++
T Consensus       149 ~G~~-~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~  186 (305)
T PRK05708        149 LGDP-RNPTAPAWLDDLREAGIPHEWTVDILTRLWRKLA  186 (305)
T ss_pred             EcCC-CCcchHHHHHHHHhcCCCCccCHHHHHHHHHHHH
Confidence            1221 2233455666666666555555565555555554

>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]

Probab=98.26  E-value=1.2e-05  Score=81.33  Aligned_cols=196  Identities=19%  Similarity=0.256  Sum_probs=124.7

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHC--CCceEEEeCCHHHHHHHHHH----HHHHHHhhhhcCCCCHHHHHHhhcCceeccC
Q 004972          305 VRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKT----IEANVRGLVTRGKLTQDKANNALKMLKGVLD  378 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  378 (721)
                      |.||+-||+|++|++....++..  .++|+++|.+..++......    ++..++.-++         ...-.++-+++|
T Consensus         1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~---------~crgknlffstd   71 (481)
T KOG2666|consen    1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVK---------QCRGKNLFFSTD   71 (481)
T ss_pred             CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHH---------HhcCCceeeecc
Confidence            46999999999999988877654  46899999999988765422    1111111111         111135778888


Q ss_pred             c-cccCCCCEEEEcccC-------------ChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHH---HhcccCCCCcEEEe
Q 004972          379 Y-SEFKDVDMVIEAVIE-------------SVPLKQKIFSELEKACPPHCILATNTSTIDLNI---VGEKTSSQDRIIGA  441 (721)
Q Consensus       379 ~-~~l~~aDlVIeavpe-------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~---l~~~~~~~~r~ig~  441 (721)
                      . ..++++|+|+.+|..             |+......-+.|.+....+.|++ ..|+.|+..   +...+.+...  |+
T Consensus        72 iekai~eadlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivv-ekstvpv~aaesi~~il~~n~~--~i  148 (481)
T KOG2666|consen   72 IEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVV-EKSTVPVKAAESIEKILNHNSK--GI  148 (481)
T ss_pred             hHHHhhhcceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEE-eeccccchHHHHHHHHHhcCCC--Cc
Confidence            8 568999999999842             56677777778888888888876 456666542   2222322222  34


Q ss_pred             cC------------------CCCCCCCCeeEEecCCCCCH--HHHHHHHHHHHHcC-CeeEEEc-----CCC-----chh
Q 004972          442 HF------------------FSPAHVMPLLEIVRTERTSA--QVILDLMTVGKIIK-KVPVVVG-----NCT-----GFA  490 (721)
Q Consensus       442 h~------------------~~p~~~~~lvEiv~~~~t~~--e~~~~~~~l~~~lG-~~~v~v~-----d~~-----gfi  490 (721)
                      ||                  +||-+.     ++.|..|++  .+++.+..+++.+- +.-+...     +..     .|+
T Consensus       149 ~fqilsnpeflaegtaikdl~npdrv-----ligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanafl  223 (481)
T KOG2666|consen  149 KFQILSNPEFLAEGTAIKDLFNPDRV-----LIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFL  223 (481)
T ss_pred             eeEeccChHHhcccchhhhhcCCceE-----EECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHH
Confidence            43                  455554     778877654  45666666666643 2223322     322     355


Q ss_pred             hhhhhhHHHHHHHHHHHc-CCCHHHHHHHH
Q 004972          491 VNRAFFPYSQSARLLVSL-GVDVFRIDSAI  519 (721)
Q Consensus       491 ~nRl~~~~~~Ea~~l~~~-Gv~~~~ID~a~  519 (721)
                      +.|+  .-+|....++|. |.+++++-.++
T Consensus       224 aqri--ssins~salceatgadv~eva~av  251 (481)
T KOG2666|consen  224 AQRI--SSINSMSALCEATGADVSEVAYAV  251 (481)
T ss_pred             HHHH--hhhHHHHHHHHhcCCCHHHHHHHh
Confidence            5555  346666677777 99999998886

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=98.26  E-value=3e-06  Score=89.83  Aligned_cols=101  Identities=24%  Similarity=0.261  Sum_probs=69.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  383 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  383 (721)
                      .||+|||+|.+|+++|..++..|.  +++++|++++.++.....+.+.....   .          ...+..++++++++
T Consensus         4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~---~----------~~~v~~~~dy~~~~   70 (312)
T cd05293           4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFL---K----------NPKIEADKDYSVTA   70 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccC---C----------CCEEEECCCHHHhC
Confidence            499999999999999999999886  79999999876655433332211000   0          02456667888899


Q ss_pred             CCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCeEEEecC
Q 004972          384 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT  420 (721)
Q Consensus       384 ~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~t  420 (721)
                      +||+||.+.-.              +..+.+++.+++.++.++ .+++..|
T Consensus        71 ~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~-~~vivvs  120 (312)
T cd05293          71 NSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPN-AILLVVS  120 (312)
T ss_pred             CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-cEEEEcc
Confidence            99999986621              233556666778888654 4444333

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK15076 alpha-galactosidase; Provisional

Probab=98.26  E-value=3.7e-06  Score=93.00  Aligned_cols=77  Identities=19%  Similarity=0.252  Sum_probs=55.8

Q ss_pred             ceeEEEEcCCCCcHHHHH--HHH----HCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccC
Q 004972          305 VRKVAVIGGGLMGSGIAT--AHI----LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD  378 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~--~la----~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  378 (721)
                      |+||+|||+|.||.+.+.  .++    ..|.+|+++|+++++++.+...+++.+...   +.         ..++..++|
T Consensus         1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~---~~---------~~~i~~ttD   68 (431)
T PRK15076          1 MPKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESL---GA---------SAKITATTD   68 (431)
T ss_pred             CcEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhc---CC---------CeEEEEECC
Confidence            369999999999976665  333    246699999999999886555444443322   10         135777888


Q ss_pred             c-cccCCCCEEEEccc
Q 004972          379 Y-SEFKDVDMVIEAVI  393 (721)
Q Consensus       379 ~-~~l~~aDlVIeavp  393 (721)
                      . +++++||+||+++-
T Consensus        69 ~~eal~dADfVv~ti~   84 (431)
T PRK15076         69 RREALQGADYVINAIQ   84 (431)
T ss_pred             HHHHhCCCCEEeEeee
Confidence            4 88999999999884

>PRK13243 glyoxylate reductase; Reviewed

Probab=98.24  E-value=5.8e-06  Score=88.71  Aligned_cols=102  Identities=15%  Similarity=0.090  Sum_probs=73.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|+|||.|.||..+|..+...|++|++||+++.....            ...+             ... .++ +.+++
T Consensus       151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~------------~~~~-------------~~~-~~l~ell~~  204 (333)
T PRK13243        151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAE------------KELG-------------AEY-RPLEELLRE  204 (333)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhhH------------HHcC-------------CEe-cCHHHHHhh
Confidence            68999999999999999999999999999998643210            0001             111 233 56789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCC--HHHHhcccC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTS  433 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--i~~l~~~~~  433 (721)
                      ||+|+.++|-+.+...-+-++....++++++++..+.+-.  -..+.+.+.
T Consensus       205 aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~  255 (333)
T PRK13243        205 SDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALK  255 (333)
T ss_pred             CCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHH
Confidence            9999999998777766666777888999998875444433  334545443

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=98.20  E-value=2.3e-06  Score=90.94  Aligned_cols=97  Identities=24%  Similarity=0.329  Sum_probs=67.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCC--CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  383 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  383 (721)
                      +||+|||+|.+|+++|..++..|  .+|+++|++++.++.....+...       .....       .....++++++++
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~-------~~~~~-------~~~i~~~d~~~l~   66 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHG-------TPFVK-------PVRIYAGDYADCK   66 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHcc-------ccccC-------CeEEeeCCHHHhC
Confidence            38999999999999999999999  58999999988765322211111       00000       0112246678899


Q ss_pred             CCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCeEE
Q 004972          384 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCIL  416 (721)
Q Consensus       384 ~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii  416 (721)
                      +||+||.+++.              +..+.+++.+++.++.+.+.++
T Consensus        67 ~aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giii  113 (308)
T cd05292          67 GADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILL  113 (308)
T ss_pred             CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence            99999999974              3445667777888877554444

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=98.18  E-value=1.7e-05  Score=84.11  Aligned_cols=113  Identities=12%  Similarity=0.067  Sum_probs=78.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|+|||.|.||..+|..+...|++|+.||++.+.....                          .......++ +.+++
T Consensus       137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~--------------------------~~~~~~~~l~e~l~~  190 (312)
T PRK15469        137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGV--------------------------QSFAGREELSAFLSQ  190 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCc--------------------------eeecccccHHHHHhc
Confidence            689999999999999999999999999999875431100                          000011233 56799


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccCC-CCcEEEecCC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSS-QDRIIGAHFF  444 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~~-~~r~ig~h~~  444 (721)
                      ||+|+.++|.+.+...-+-++....++++++++..+=+  +.-..+.+.+.. .-+..++.-|
T Consensus       191 aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf  253 (312)
T PRK15469        191 TRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVF  253 (312)
T ss_pred             CCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCC
Confidence            99999999988887776667777888999988744433  334455555542 2233445533

>PLN02602 lactate dehydrogenase

Probab=98.18  E-value=4.8e-06  Score=89.34  Aligned_cols=101  Identities=26%  Similarity=0.348  Sum_probs=68.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  383 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  383 (721)
                      +||+|||+|.+|+++|..++..|.  +++++|++++.++.....+.+... ..  +         . ..+..+.++++++
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~-~~--~---------~-~~i~~~~dy~~~~  104 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAA-FL--P---------R-TKILASTDYAVTA  104 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhh-cC--C---------C-CEEEeCCCHHHhC
Confidence            599999999999999999998886  799999998876554333332211 00  0         0 1344446788899


Q ss_pred             CCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCeEEEecC
Q 004972          384 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT  420 (721)
Q Consensus       384 ~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~t  420 (721)
                      +||+||.+.-.              +..+.+++..++.+++++ ++++..|
T Consensus       105 daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~-~ivivvt  154 (350)
T PLN02602        105 GSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPD-TILLIVS  154 (350)
T ss_pred             CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCC-eEEEEec
Confidence            99999988521              334556667778887655 4444333

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=98.16  E-value=4.8e-06  Score=86.70  Aligned_cols=85  Identities=18%  Similarity=0.194  Sum_probs=63.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|+|||.|.||.++|..|...|++|+++++.....+.+.           ..|             .... ++ +.++.
T Consensus        17 KtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~-----------~~G-------------~~v~-sl~Eaak~   71 (335)
T PRK13403         17 KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAK-----------ADG-------------FEVM-SVSEAVRT   71 (335)
T ss_pred             CEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHH-----------HcC-------------CEEC-CHHHHHhc
Confidence            6899999999999999999999999999987643322211           111             2222 33 66899


Q ss_pred             CCEEEEcccCChHHHHHHH-HHHHhhCCCCeEEE
Q 004972          385 VDMVIEAVIESVPLKQKIF-SELEKACPPHCILA  417 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~-~~l~~~~~~~~ii~  417 (721)
                      ||+|+.++|. .+. +.++ .++.+.++++++++
T Consensus        72 ADVV~llLPd-~~t-~~V~~~eil~~MK~GaiL~  103 (335)
T PRK13403         72 AQVVQMLLPD-EQQ-AHVYKAEVEENLREGQMLL  103 (335)
T ss_pred             CCEEEEeCCC-hHH-HHHHHHHHHhcCCCCCEEE
Confidence            9999999995 444 4555 56888899998775

>PRK06436 glycerate dehydrogenase; Provisional

Probab=98.15  E-value=1.4e-05  Score=84.38  Aligned_cols=135  Identities=11%  Similarity=0.074  Sum_probs=87.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|+|||.|.||..+|..+...|++|+.||++...                 .+ .           .....++ +.+++
T Consensus       123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~-----------------~~-~-----------~~~~~~l~ell~~  173 (303)
T PRK06436        123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN-----------------DG-I-----------SSIYMEPEDIMKK  173 (303)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc-----------------cC-c-----------ccccCCHHHHHhh
Confidence            68999999999999999888889999999987421                 00 0           0001233 55789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccCC-CCcEEEecCCC--CC---CCCCeeEEe
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSS-QDRIIGAHFFS--PA---HVMPLLEIV  456 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~~-~~r~ig~h~~~--p~---~~~~lvEiv  456 (721)
                      ||+|+.++|.+.+...-+-++....++++++++..+.+  +....+.+.+.. .....++..|.  |.   +..+.+-++
T Consensus       174 aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~~~~nviiT  253 (303)
T PRK06436        174 SDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITETNPDNVILS  253 (303)
T ss_pred             CCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccCCCCCEEEC
Confidence            99999999988876665556677778999988754433  333455555542 23344444332  21   234667777


Q ss_pred             cC-C-CCCHHHHHHH
Q 004972          457 RT-E-RTSAQVILDL  469 (721)
Q Consensus       457 ~~-~-~t~~e~~~~~  469 (721)
                      |+ . .++++..+.+
T Consensus       254 PHi~g~~t~e~~~~~  268 (303)
T PRK06436        254 PHVAGGMSGEIMQPA  268 (303)
T ss_pred             CccccccCHHHHHHH
Confidence            77 2 2455544443

>PRK07574 formate dehydrogenase; Provisional

Probab=98.14  E-value=2e-05  Score=85.54  Aligned_cols=130  Identities=10%  Similarity=0.001  Sum_probs=84.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|+|||.|.||..+|..+...|++|+.||++....+...           .             ..+....++ +.++.
T Consensus       193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~-----------~-------------~g~~~~~~l~ell~~  248 (385)
T PRK07574        193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQ-----------E-------------LGLTYHVSFDSLVSV  248 (385)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHh-----------h-------------cCceecCCHHHHhhc
Confidence            5799999999999999999999999999999763211100           0             012222344 56799


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH--HHHhcccC-CCCcEEEecCCC--------CCCCCCee
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS-SQDRIIGAHFFS--------PAHVMPLL  453 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i--~~l~~~~~-~~~r~ig~h~~~--------p~~~~~lv  453 (721)
                      ||+|+.++|.+.+...-+=++....++++++|+..+.+-.+  ..+.+.+. ..-+..++.-|.        |-+.++.+
T Consensus       249 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d~pL~~~pNv  328 (385)
T PRK07574        249 CDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRN  328 (385)
T ss_pred             CCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCCCCCChHHhCCCe
Confidence            99999999988877665556677888999988754444333  35545543 222333444322        22445566


Q ss_pred             EEecCC
Q 004972          454 EIVRTE  459 (721)
Q Consensus       454 Eiv~~~  459 (721)
                      -++|+-
T Consensus       329 ilTPHi  334 (385)
T PRK07574        329 GMTPHI  334 (385)
T ss_pred             EECCcc
Confidence            676653

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=98.14  E-value=1.1e-05  Score=76.31  Aligned_cols=112  Identities=17%  Similarity=0.106  Sum_probs=73.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCCCC
Q 004972          308 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVD  386 (721)
Q Consensus       308 I~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~aD  386 (721)
                      |+|+|+|.||.-+|..|++.|++|+++++.+ .++...+.     ...+....     -+..........+. +....+|
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~-----g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~D   69 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQ-----GLTITGPD-----GDETVQPPIVISAPSADAGPYD   69 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHH-----CEEEEETT-----EEEEEEEEEEESSHGHHHSTES
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhhe-----eEEEEecc-----cceecccccccCcchhccCCCc
Confidence            7899999999999999999999999999998 65553211     00000000     00000000111111 2457899


Q ss_pred             EEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHH-hccc
Q 004972          387 MVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV-GEKT  432 (721)
Q Consensus       387 lVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l-~~~~  432 (721)
                      +||.|+.  .....++++.+.+++.+++.|++...++...+. .+..
T Consensus        70 ~viv~vK--a~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~  114 (151)
T PF02558_consen   70 LVIVAVK--AYQLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYF  114 (151)
T ss_dssp             EEEE-SS--GGGHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHS
T ss_pred             EEEEEec--ccchHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHc
Confidence            9999996  666677889999999999888887888776544 4444

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=98.14  E-value=5.1e-06  Score=87.90  Aligned_cols=99  Identities=23%  Similarity=0.325  Sum_probs=70.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHCC--CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCC
Q 004972          308 VAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  385 (721)
Q Consensus       308 I~VIG~G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  385 (721)
                      |+|||+|.+|+++|..++..|  .+++++|++++.++.....+.+....+   .          ..++..+++++++++|
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~---~----------~~~i~~~~~~~~l~~a   67 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFL---A----------TGTIVRGGDYADAADA   67 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhcccc---C----------CCeEEECCCHHHhCCC
Confidence            689999999999999999998  589999999988776544443322110   0          0134445667899999


Q ss_pred             CEEEEcccC--------------ChHHHHHHHHHHHhhCCCCeEEEecC
Q 004972          386 DMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT  420 (721)
Q Consensus       386 DlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~t  420 (721)
                      |+||.++..              +..+.+++..++.+++ ++++++..|
T Consensus        68 DiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~s  115 (300)
T cd00300          68 DIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVVS  115 (300)
T ss_pred             CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcc
Confidence            999998852              3445667777888887 555554434

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=98.13  E-value=5.1e-06  Score=88.33  Aligned_cols=100  Identities=23%  Similarity=0.278  Sum_probs=68.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  383 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  383 (721)
                      +||+|||+|.+|+++|..++..|+  +++++|++++.++.....+.+..... . .           -.+. ++++++++
T Consensus         7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~-~-~-----------~~i~-~~~~~~~~   72 (315)
T PRK00066          7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFT-S-P-----------TKIY-AGDYSDCK   72 (315)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhcccc-C-C-----------eEEE-eCCHHHhC
Confidence            599999999999999999999998  89999999888766544443322110 0 0           1233 45678899


Q ss_pred             CCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCeEEEecC
Q 004972          384 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT  420 (721)
Q Consensus       384 ~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~t  420 (721)
                      +||+||.+.-.              +..+.+++..++.++.+ +++++..|
T Consensus        73 ~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~-~~~vivvs  122 (315)
T PRK00066         73 DADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGF-DGIFLVAS  122 (315)
T ss_pred             CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEcc
Confidence            99999987631              33455666667777665 45554333

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=98.12  E-value=6.6e-06  Score=76.77  Aligned_cols=93  Identities=17%  Similarity=0.220  Sum_probs=63.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHH-HHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  384 (721)
                      ++|+|||.|..|.+.|++|..+|++|++-.+..+ ..+++.           +.|             ....+-.++++.
T Consensus         5 k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~-----------~~G-------------f~v~~~~eAv~~   60 (165)
T PF07991_consen    5 KTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAK-----------ADG-------------FEVMSVAEAVKK   60 (165)
T ss_dssp             SEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHH-----------HTT--------------ECCEHHHHHHC
T ss_pred             CEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHH-----------HCC-------------CeeccHHHHHhh
Confidence            6899999999999999999999999999998876 433332           222             333333377899


Q ss_pred             CCEEEEcccCChHHHHHHH-HHHHhhCCCCeEEEecCCCCCH
Q 004972          385 VDMVIEAVIESVPLKQKIF-SELEKACPPHCILATNTSTIDL  425 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~-~~l~~~~~~~~ii~s~ts~~~i  425 (721)
                      ||+|+..+|  -+.-.+++ ++|.+.++++..+.- +.++.+
T Consensus        61 aDvV~~L~P--D~~q~~vy~~~I~p~l~~G~~L~f-ahGfni   99 (165)
T PF07991_consen   61 ADVVMLLLP--DEVQPEVYEEEIAPNLKPGATLVF-AHGFNI   99 (165)
T ss_dssp             -SEEEE-S---HHHHHHHHHHHHHHHS-TT-EEEE-SSSHHH
T ss_pred             CCEEEEeCC--hHHHHHHHHHHHHhhCCCCCEEEe-CCcchh
Confidence            999999999  55556777 789999999998753 445444

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PLN03139 formate dehydrogenase; Provisional

Probab=98.12  E-value=1.9e-05  Score=85.62  Aligned_cols=130  Identities=13%  Similarity=0.053  Sum_probs=86.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|+|||.|.||..+|..+...|.+|..||++....+...           ..             .+...+++ +.+++
T Consensus       200 ktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~-----------~~-------------g~~~~~~l~ell~~  255 (386)
T PLN03139        200 KTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEK-----------ET-------------GAKFEEDLDAMLPK  255 (386)
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHh-----------hc-------------CceecCCHHHHHhh
Confidence            5899999999999999999999999999998753211100           00             12223345 55789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH--HHHhcccC-CCCcEEEecCCC--------CCCCCCee
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS-SQDRIIGAHFFS--------PAHVMPLL  453 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i--~~l~~~~~-~~~r~ig~h~~~--------p~~~~~lv  453 (721)
                      ||+|+.++|.+.+.+.-+-+++...++++++|+..+-+-.+  ..+.+.+. ..-...++.-|.        |-+.++.+
T Consensus       256 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL~~~pNv  335 (386)
T PLN03139        256 CDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNH  335 (386)
T ss_pred             CCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCCChhhcCCCe
Confidence            99999999988877766657788889999988754444333  35555543 222334444332        22455666


Q ss_pred             EEecCC
Q 004972          454 EIVRTE  459 (721)
Q Consensus       454 Eiv~~~  459 (721)
                      -++|+-
T Consensus       336 ilTPHi  341 (386)
T PLN03139        336 AMTPHI  341 (386)
T ss_pred             EEcccc
Confidence            677754

>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=98.06  E-value=9.7e-06  Score=78.39  Aligned_cols=132  Identities=21%  Similarity=0.204  Sum_probs=95.2

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEECC
Q 004972           28 LAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEG  107 (721)
Q Consensus        28 l~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav~G  107 (721)
                      ++.+...++...+..+..++..+.|+|.=.    |.|+|+..                ...++ +.|...+.|+++.+.|
T Consensus        18 I~~~~~~~i~~~l~~~~~~~~~~~i~l~in----SpGG~v~~----------------~~~i~-~~l~~~~~~v~t~~~g   76 (171)
T cd07017          18 IDDEVANLIIAQLLYLESEDPKKPIYLYIN----SPGGSVTA----------------GLAIY-DTMQYIKPPVSTICLG   76 (171)
T ss_pred             EcHHHHHHHHHHHHHHHccCCCCceEEEEE----CCCCCHHH----------------HHHHH-HHHHhcCCCEEEEEEe
Confidence            677888999999999998766555555311    22333221                12344 5567789999999999


Q ss_pred             cccccchHhhhhcC--EEEeeCCceEeCcccccCccccc------------------cccccc--cCHHHHHHHHHcCCC
Q 004972          108 LALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGT------------------QRLPRL--VGLSKAIEMMLLSKS  165 (721)
Q Consensus       108 ~a~GgG~~lalacD--~ria~~~a~~~~pe~~~Gl~P~~------------------~~l~r~--~G~~~a~~l~ltg~~  165 (721)
                      .|.++|.-++++||  .|++.+++.|.+.+...+..-..                  ..+...  .......+++..+..
T Consensus        77 ~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~  156 (171)
T cd07017          77 LAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTDRDRY  156 (171)
T ss_pred             EehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCcc
Confidence            99999999999999  89999999999987765532210                  011111  234455677778899


Q ss_pred             cCHHHHHHcCCccEE
Q 004972          166 ITSEEGWKLGLIDAV  180 (721)
Q Consensus       166 ~~a~eA~~~Glv~~v  180 (721)
                      ++|+||+++|+||+|
T Consensus       157 lta~EA~e~GiiD~V  171 (171)
T cd07017         157 MSAEEAKEYGLIDKI  171 (171)
T ss_pred             ccHHHHHHcCCCccC
Confidence            999999999999975

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=98.05  E-value=1e-05  Score=83.27  Aligned_cols=117  Identities=19%  Similarity=0.174  Sum_probs=80.1

Q ss_pred             CCceeEEEEcCCCCcHHHHHHHHHC--CC-----ceEEEeCCHHHHHHHHHHHHHHHHhhhhc-CCCCHHHHHHhhcCce
Q 004972          303 RGVRKVAVIGGGLMGSGIATAHILN--NI-----YVVLKEVNSEYLLKGIKTIEANVRGLVTR-GKLTQDKANNALKMLK  374 (721)
Q Consensus       303 ~~~~kI~VIG~G~mG~~iA~~la~~--G~-----~V~l~d~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~i~  374 (721)
                      +...||+|||+|+||++||..+.++  ++     +|..|-..++.-.. ...+.+.+....+. ..+..   -....++.
T Consensus        19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~-~~~L~eiIN~~heN~KYlpg---~~lP~Nvv   94 (372)
T KOG2711|consen   19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGE-AEKLTEIINSRHENVKYLPG---IKLPENVV   94 (372)
T ss_pred             cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCCh-hHHHHHHhccccccccccCC---ccCCCCeE
Confidence            3447899999999999999998765  22     68888765544332 11111111111111 01110   11224677


Q ss_pred             eccCc-cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH
Q 004972          375 GVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL  425 (721)
Q Consensus       375 ~~~~~-~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i  425 (721)
                      +++|+ +++.+||++|-+||  .+....++.+|..++++++..+|.+.++..
T Consensus        95 Av~dl~ea~~dADilvf~vP--hQf~~~ic~~l~g~vk~~~~aISL~KG~e~  144 (372)
T KOG2711|consen   95 AVPDLVEAAKDADILVFVVP--HQFIPRICEQLKGYVKPGATAISLIKGVEV  144 (372)
T ss_pred             ecchHHHHhccCCEEEEeCC--hhhHHHHHHHHhcccCCCCeEEEeecceec
Confidence            78888 77899999999999  999999999999999999999987776553

>PRK08605 D-lactate dehydrogenase; Validated

Probab=98.04  E-value=6.8e-06  Score=88.19  Aligned_cols=99  Identities=16%  Similarity=0.081  Sum_probs=68.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHH-HCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972          306 RKVAVIGGGLMGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  383 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  383 (721)
                      ++|+|||+|.||.++|..++ ..|.+|+.||+++......                           .+...+++ +.++
T Consensus       147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~---------------------------~~~~~~~l~ell~  199 (332)
T PRK08605        147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAAT---------------------------YVDYKDTIEEAVE  199 (332)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHHh---------------------------hccccCCHHHHHH
Confidence            48999999999999999995 4588999999886532100                           01123344 5578


Q ss_pred             CCCEEEEcccCChHHHHHHH-HHHHhhCCCCeEEEecCCCCCH--HHHhccc
Q 004972          384 DVDMVIEAVIESVPLKQKIF-SELEKACPPHCILATNTSTIDL--NIVGEKT  432 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~-~~l~~~~~~~~ii~s~ts~~~i--~~l~~~~  432 (721)
                      +||+|+.++|....... ++ .++.+.++++++|+..+.+..+  ..+.+.+
T Consensus       200 ~aDvIvl~lP~t~~t~~-li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL  250 (332)
T PRK08605        200 GADIVTLHMPATKYNHY-LFNADLFKHFKKGAVFVNCARGSLVDTKALLDAL  250 (332)
T ss_pred             hCCEEEEeCCCCcchhh-hcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHH
Confidence            99999999997666543 33 4566778999988765555443  3444444

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=98.03  E-value=1.3e-05  Score=84.88  Aligned_cols=103  Identities=17%  Similarity=0.257  Sum_probs=66.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972          307 KVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  384 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  384 (721)
                      ||+|||+|.+|+++|..++..|.  +++++|++++.++.....+.+....... .          --++. +.+++++++
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~-~----------~~~i~-~~~y~~~~~   68 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYS-T----------NTKIR-AGDYDDCAD   68 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCC-C----------CEEEE-ECCHHHhCC
Confidence            79999999999999999999887  7999999988765433322221110000 0          01233 457899999


Q ss_pred             CCEEEEcccC------C----------hHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972          385 VDMVIEAVIE------S----------VPLKQKIFSELEKACPPHCILATNTST  422 (721)
Q Consensus       385 aDlVIeavpe------~----------~~~k~~v~~~l~~~~~~~~ii~s~ts~  422 (721)
                      ||+||.+.-.      +          ..+.+++..++.++. ++++++..|..
T Consensus        69 aDivvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~-p~~i~ivvsNP  121 (307)
T cd05290          69 ADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVT-KEAVIILITNP  121 (307)
T ss_pred             CCEEEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecCc
Confidence            9999987731      1          234455556677776 45555544433

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=98.03  E-value=3.4e-05  Score=76.42  Aligned_cols=134  Identities=19%  Similarity=0.191  Sum_probs=93.3

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEE--EeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEE
Q 004972           26 NALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA  103 (721)
Q Consensus        26 Nal~~~~~~~l~~~l~~~~~~~~v~~vVl--tg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Ia  103 (721)
                      ..++.++.+.+...+..++.++..+.|.|  .+.|      +|+.                ....++ +.|...+.|+++
T Consensus        38 g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpG------G~v~----------------~g~~I~-d~i~~~~~~v~t   94 (200)
T PRK00277         38 GEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPG------GSVT----------------AGLAIY-DTMQFIKPDVST   94 (200)
T ss_pred             CEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCC------CcHH----------------HHHHHH-HHHHhcCCCEEE
Confidence            44778899999999998886544443444  3333      3322                122444 557778899999


Q ss_pred             EECCcccccchHhhhhc--CEEEeeCCceEeCcccccCcccc-c------------------ccccccc--CHHHHHHHH
Q 004972          104 AVEGLALGGGLELAMGC--HARIAAPKTQLGLPELTLGVIPG-T------------------QRLPRLV--GLSKAIEMM  160 (721)
Q Consensus       104 av~G~a~GgG~~lalac--D~ria~~~a~~~~pe~~~Gl~P~-~------------------~~l~r~~--G~~~a~~l~  160 (721)
                      .+.|.|.+.|..+++++  +.|++.+++++++....-|. -| .                  ..+...-  ......+++
T Consensus        95 ~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~-~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~~~  173 (200)
T PRK00277         95 ICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGF-QGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEKDT  173 (200)
T ss_pred             EEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccc-cCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHh
Confidence            99999999999999975  47899999998886554222 22 0                  1122222  345556777


Q ss_pred             HcCCCcCHHHHHHcCCccEEcCC
Q 004972          161 LLSKSITSEEGWKLGLIDAVVTS  183 (721)
Q Consensus       161 ltg~~~~a~eA~~~Glv~~vv~~  183 (721)
                      -.+..++|+||++.||||+|+..
T Consensus       174 ~~~~~lsa~EA~e~GliD~Ii~~  196 (200)
T PRK00277        174 DRDNFMSAEEAKEYGLIDEVLTK  196 (200)
T ss_pred             hCCccccHHHHHHcCCccEEeec
Confidence            77889999999999999999854

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=98.02  E-value=1.2e-05  Score=84.04  Aligned_cols=104  Identities=26%  Similarity=0.332  Sum_probs=68.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  383 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  383 (721)
                      +||+|||+|.+|+++|..|...+.  +++++|++++.++.-...+.+......            ....+..+.++++++
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~------------~~~~i~~~~~y~~~~   68 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLG------------SDVKITGDGDYEDLK   68 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhcc------------CceEEecCCChhhhc
Confidence            489999999999999999977754  899999996654432211111100000            001233334488999


Q ss_pred             CCCEEEEcc--c------------CChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972          384 DVDMVIEAV--I------------ESVPLKQKIFSELEKACPPHCILATNTST  422 (721)
Q Consensus       384 ~aDlVIeav--p------------e~~~~k~~v~~~l~~~~~~~~ii~s~ts~  422 (721)
                      +||+||.+.  |            .|..+.+++.+++.++++ +.+++..|..
T Consensus        69 ~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~-d~ivlVvtNP  120 (313)
T COG0039          69 GADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAP-DAIVLVVTNP  120 (313)
T ss_pred             CCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCC-CeEEEEecCc
Confidence            999999887  3            255677777788888877 5555444443

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=98.00  E-value=8.3e-06  Score=77.47  Aligned_cols=117  Identities=11%  Similarity=0.040  Sum_probs=70.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCC-CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  384 (721)
                      ++|+|+|+|.||.+++..++..| .+|+++|++++..+...+.+..       .. +          .....+..+.+++
T Consensus        20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~-------~~-~----------~~~~~~~~~~~~~   81 (155)
T cd01065          20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGE-------LG-I----------AIAYLDLEELLAE   81 (155)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhh-------cc-c----------ceeecchhhcccc
Confidence            58999999999999999999986 7899999999887664322110       00 0          0111222244789


Q ss_pred             CCEEEEcccCChH-HHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccC-CCCcEEEec
Q 004972          385 VDMVIEAVIESVP-LKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTS-SQDRIIGAH  442 (721)
Q Consensus       385 aDlVIeavpe~~~-~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~-~~~r~ig~h  442 (721)
                      +|+||.|+|.+.. .....+.  ...+++++++++.++....+.+.+... ...+++..|
T Consensus        82 ~Dvvi~~~~~~~~~~~~~~~~--~~~~~~~~~v~D~~~~~~~~~l~~~~~~~g~~~v~g~  139 (155)
T cd01065          82 ADLIINTTPVGMKPGDELPLP--PSLLKPGGVVYDVVYNPLETPLLKEARALGAKTIDGL  139 (155)
T ss_pred             CCEEEeCcCCCCCCCCCCCCC--HHHcCCCCEEEEcCcCCCCCHHHHHHHHCCCceeCCH
Confidence            9999999996653 1111111  123577888876555433234433332 223444444

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=98.00  E-value=2.8e-05  Score=77.37  Aligned_cols=137  Identities=22%  Similarity=0.236  Sum_probs=97.9

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEE
Q 004972           26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (721)
Q Consensus        26 Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav  105 (721)
                      ..++..+..++...|..++.++..+.|.|.=.    |.|+++..                ...++ +.|..++.|+++.+
T Consensus        42 g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN----SpGG~v~~----------------g~~I~-d~i~~~~~~v~t~~  100 (207)
T PRK12553         42 GQVDDASANDVMAQLLVLESIDPDRDITLYIN----SPGGSVTA----------------GDAIY-DTIQFIRPDVQTVC  100 (207)
T ss_pred             ceECHHHHHHHHHHHHHHHhCCCCCCEEEEEe----CCCCcHHH----------------HHHHH-HHHHhcCCCcEEEE
Confidence            45789999999999999987654444444211    23333321                12444 66778889999999


Q ss_pred             CCcccccchHhhhhcC--EEEeeCCceEeCccccc-Ccccc--c-----------------ccccccc--CHHHHHHHHH
Q 004972          106 EGLALGGGLELAMGCH--ARIAAPKTQLGLPELTL-GVIPG--T-----------------QRLPRLV--GLSKAIEMML  161 (721)
Q Consensus       106 ~G~a~GgG~~lalacD--~ria~~~a~~~~pe~~~-Gl~P~--~-----------------~~l~r~~--G~~~a~~l~l  161 (721)
                      .|.|.+.|.-++++||  .|++.+++.|.+..... |..-|  +                 ..+.+.-  ......+++-
T Consensus       101 ~G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~  180 (207)
T PRK12553        101 TGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGGIRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRKDTD  180 (207)
T ss_pred             EeehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHh
Confidence            9999999999999999  69999999999877643 22112  0                 1122222  3455667777


Q ss_pred             cCCCcCHHHHHHcCCccEEcCC
Q 004972          162 LSKSITSEEGWKLGLIDAVVTS  183 (721)
Q Consensus       162 tg~~~~a~eA~~~Glv~~vv~~  183 (721)
                      .+..++|+||+++||||+|+..
T Consensus       181 ~~~~lta~EA~e~GliD~I~~~  202 (207)
T PRK12553        181 RDKWLTAEEAKDYGLVDQIITS  202 (207)
T ss_pred             cCccccHHHHHHcCCccEEcCc
Confidence            8899999999999999999854

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=97.98  E-value=1.3e-05  Score=85.18  Aligned_cols=123  Identities=22%  Similarity=0.234  Sum_probs=77.0

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCC--ceEEEeCCH--HHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcc
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS  380 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~--~V~l~d~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  380 (721)
                      +||+|+|+ |..|..++..++..|+  +|+++|+++  +.++.....+.   +.+...+.         ..++..+++++
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~---d~~~~~~~---------~~~i~~~~d~~   68 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIY---DALAAAGI---------DAEIKISSDLS   68 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhh---hchhccCC---------CcEEEECCCHH
Confidence            48999998 9999999999999987  499999965  33332221111   11111110         01466666788


Q ss_pred             ccCCCCEEEEcccC------C--------hHHHHHHHHHHHhhCCCCeEEEecCCCCCHHH--HhcccC-CCCcEEEe
Q 004972          381 EFKDVDMVIEAVIE------S--------VPLKQKIFSELEKACPPHCILATNTSTIDLNI--VGEKTS-SQDRIIGA  441 (721)
Q Consensus       381 ~l~~aDlVIeavpe------~--------~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~--l~~~~~-~~~r~ig~  441 (721)
                      ++++||+||.++.-      +        ..+.+++...+.++++ +.+++..++..++..  +..... .+.+++|+
T Consensus        69 ~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~-~~~viv~~npvd~~t~~~~~~~g~~~~~viG~  145 (309)
T cd05294          69 DVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAP-DTKILVVTNPVDVMTYKALKESGFDKNRVFGL  145 (309)
T ss_pred             HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHHHhcCCCHHHEeec
Confidence            89999999999841      1        1446666677777765 566666666655432  222233 23566664

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=97.95  E-value=0.00013  Score=74.91  Aligned_cols=151  Identities=13%  Similarity=0.041  Sum_probs=104.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc--cccC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY--SEFK  383 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~l~  383 (721)
                      .+|||||.|.||.-+|..+.++|+.|...||++  -+.+.+++                      +.-. .+++  -+-+
T Consensus        53 l~IaIIGfGnmGqflAetli~aGh~li~hsRsd--yssaa~~y----------------------g~~~-ft~lhdlcer  107 (480)
T KOG2380|consen   53 LVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD--YSSAAEKY----------------------GSAK-FTLLHDLCER  107 (480)
T ss_pred             eEEEEEecCcHHHHHHHHHHhcCceeEecCcch--hHHHHHHh----------------------cccc-cccHHHHHhc
Confidence            579999999999999999999999999999987  22222211                      1111 1222  1236


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhh-CCCCeEEEecCCCCC--HHHHhcccCCCCcEEEecCCCCCC-C------CCee
Q 004972          384 DVDMVIEAVIESVPLKQKIFSELEKA-CPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAH-V------MPLL  453 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~~~l~~~-~~~~~ii~s~ts~~~--i~~l~~~~~~~~r~ig~h~~~p~~-~------~~lv  453 (721)
                      ..|+|+.|+.  .....++++..-.. ++-++|++..+|...  .+...+.++..-.++..|++..|. .      .|+|
T Consensus       108 hpDvvLlcts--ilsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpfV  185 (480)
T KOG2380|consen  108 HPDVVLLCTS--ILSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPFV  185 (480)
T ss_pred             CCCEEEEEeh--hhhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCcCCCccccCceE
Confidence            7899999996  66666676665444 667899998777543  344455666666789999965553 1      1343


Q ss_pred             EEe-c-C-CCCCHHHHHHHHHHHHHcCCeeEEE
Q 004972          454 EIV-R-T-ERTSAQVILDLMTVGKIIKKVPVVV  483 (721)
Q Consensus       454 Eiv-~-~-~~t~~e~~~~~~~l~~~lG~~~v~v  483 (721)
                      -+- + + ....+|-.+.+.+++...|...|.+
T Consensus       186 ydkvRig~~~~r~ercE~fleIf~cegckmVem  218 (480)
T KOG2380|consen  186 YDKVRIGYAASRPERCEFFLEIFACEGCKMVEM  218 (480)
T ss_pred             EEEeeccccccchHHHHHHHHHHHhcCCeEEEE
Confidence            321 1 1 2235899999999999999998877

>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=97.95  E-value=5e-05  Score=75.60  Aligned_cols=151  Identities=15%  Similarity=0.123  Sum_probs=115.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC----ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccc
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  381 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  381 (721)
                      ++|++||+|.|..+++..+.+.|.    .++.+-.+......-          ...            ++.-.+.++.+.
T Consensus         1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~----------~~~------------~g~~~~~~n~~~   58 (267)
T KOG3124|consen    1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLM----------FEA------------LGVKTVFTNLEV   58 (267)
T ss_pred             CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhh----------hhc------------CCceeeechHHH
Confidence            379999999999999999999986    344444322211110          001            122233444677


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEe-cCCC
Q 004972          382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RTER  460 (721)
Q Consensus       382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv-~~~~  460 (721)
                      ++.+|++++++-  +.....++.++...+..+.|++|..-+.+++.+...+..+.|++...++.|..+.....+. .+.+
T Consensus        59 ~~~s~v~~~svK--p~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~~l~~~~rviRvmpNtp~~v~eg~sv~~~g~~  136 (267)
T KOG3124|consen   59 LQASDVVFLSVK--PQVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLESKLSPPTRVIRVMPNTPSVVGEGASVYAIGCH  136 (267)
T ss_pred             HhhccceeEeec--chhHHHHhhcCccccccceEEEEEeecccHHHHHHhcCCCCceEEecCCChhhhhcCcEEEeeCCC
Confidence            889999999996  7777888888777667778999999999999999988888899999999999998888854 5777


Q ss_pred             CCHHHHHHHHHHHHHcCCee
Q 004972          461 TSAQVILDLMTVGKIIKKVP  480 (721)
Q Consensus       461 t~~e~~~~~~~l~~~lG~~~  480 (721)
                      ...+..+.+..++...|.-.
T Consensus       137 ~~~~D~~l~~~ll~~vG~~~  156 (267)
T KOG3124|consen  137 ATNEDLELVEELLSAVGLCE  156 (267)
T ss_pred             cchhhHHHHHHHHHhcCcce
Confidence            88888899999999999644

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=97.93  E-value=5e-05  Score=86.58  Aligned_cols=130  Identities=15%  Similarity=0.055  Sum_probs=83.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|+|||.|.||..+|..+...|++|+.||+.... +...           +.             .+...+++ +.+++
T Consensus       139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-----------~~-------------g~~~~~~l~ell~~  193 (525)
T TIGR01327       139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAE-----------QL-------------GVELVDDLDELLAR  193 (525)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hc-------------CCEEcCCHHHHHhh
Confidence            68999999999999999999999999999985321 1110           00             12223344 55789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccCC-CCcEEEecCC--CC-----CCCCCeeE
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSS-QDRIIGAHFF--SP-----AHVMPLLE  454 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~~-~~r~ig~h~~--~p-----~~~~~lvE  454 (721)
                      ||+|+.++|.+.+.+.-+=++....++++++++..+-+  +.-..+.+.+.. .-...++..|  .|     -+..+.|-
T Consensus       194 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi  273 (525)
T TIGR01327       194 ADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVI  273 (525)
T ss_pred             CCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCCCChhhcCCCeE
Confidence            99999999977766554435566678999988754444  333455555542 2233444433  22     33445566


Q ss_pred             EecCCC
Q 004972          455 IVRTER  460 (721)
Q Consensus       455 iv~~~~  460 (721)
                      ++|+-.
T Consensus       274 ~TPHia  279 (525)
T TIGR01327       274 ATPHLG  279 (525)
T ss_pred             ECCCcc
Confidence            777544

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK11778 putative inner membrane peptidase; Provisional

Probab=97.88  E-value=0.00012  Score=77.25  Aligned_cols=159  Identities=17%  Similarity=0.200  Sum_probs=99.1

Q ss_pred             cCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHH
Q 004972           12 NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV   90 (721)
Q Consensus        12 ~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~   90 (721)
                      .+.|++|.++.+ ..+ -...+.+++...+.....+   .+|||.-.    |.|+.....             ......+
T Consensus        89 ~~~v~VI~~~G~I~~~-~~~~l~e~i~a~l~~A~~~---~aVvLrid----SpGG~v~~s-------------~~a~~~l  147 (330)
T PRK11778         89 KPRLFVLDFKGDIDAS-EVESLREEITAILAVAKPG---DEVLLRLE----SPGGVVHGY-------------GLAASQL  147 (330)
T ss_pred             CCeEEEEEEEEEECCC-cchhhHHHHHHHHHhccCC---CeEEEEEe----CCCCchhHH-------------HHHHHHH
Confidence            367999999876 211 1123456666666555433   46777643    223322211             0011113


Q ss_pred             HHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccc------------cCcccc-----------ccc-
Q 004972           91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGVIPG-----------TQR-  146 (721)
Q Consensus        91 ~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~------------~Gl~P~-----------~~~-  146 (721)
                       ..+....||+++.+++.|..||.-+|++||.+++.+.+.+|...+-            +|+-+.           +.+ 
T Consensus       148 -~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~~pf~  226 (330)
T PRK11778        148 -QRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTLFG  226 (330)
T ss_pred             -HHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeeeccCHHHHHHHCCCceEEEEecCccCCCCCCC
Confidence             3467788999999999999999999999999999999888765443            233110           000 


Q ss_pred             ---------ccc-----------cc--CH-HHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHH
Q 004972          147 ---------LPR-----------LV--GL-SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRL  192 (721)
Q Consensus       147 ---------l~r-----------~~--G~-~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~  192 (721)
                               +..           .|  ++ ....+-+.+|+.+++++|++.||||++...+++...+..
T Consensus       227 ~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~dd~i~~~~~  295 (330)
T PRK11778        227 ENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTSDDYLLELMK  295 (330)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCHHHHHHHHHh
Confidence                     000           00  00 112345668999999999999999999987777554443

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=97.88  E-value=8e-05  Score=79.17  Aligned_cols=127  Identities=17%  Similarity=0.136  Sum_probs=83.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeC-CHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEV-NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  383 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  383 (721)
                      ++|||||+|.+|+.+|..+..-|++|+.||+ .+......                          .......++ +.++
T Consensus       143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~--------------------------~~~~~~~~Ld~lL~  196 (324)
T COG0111         143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGV--------------------------DGVVGVDSLDELLA  196 (324)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhcc--------------------------ccceecccHHHHHh
Confidence            5899999999999999999999999999999 33321110                          012223445 5579


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCC-C--CCHHHHhcccCC-CCcEEEecCCC--------CCCCCC
Q 004972          384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-T--IDLNIVGEKTSS-QDRIIGAHFFS--------PAHVMP  451 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts-~--~~i~~l~~~~~~-~~r~ig~h~~~--------p~~~~~  451 (721)
                      .||+|+..+|...+.+.-+=++....++++++++ |++ +  +.-..+.+.+.. .-+-.++..|.        |-+..+
T Consensus       197 ~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailI-N~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~p  275 (324)
T COG0111         197 EADILTLHLPLTPETRGLINAEELAKMKPGAILI-NAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLP  275 (324)
T ss_pred             hCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEE-ECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCC
Confidence            9999999999888765555566667789999776 555 3  333455555542 22333444432        334445


Q ss_pred             eeEEecCC
Q 004972          452 LLEIVRTE  459 (721)
Q Consensus       452 lvEiv~~~  459 (721)
                      .|-++|+-
T Consensus       276 nV~~TPHi  283 (324)
T COG0111         276 NVILTPHI  283 (324)
T ss_pred             CeEECCcc
Confidence            56666643

>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.85  E-value=1.6e-05  Score=77.74  Aligned_cols=138  Identities=20%  Similarity=0.291  Sum_probs=94.1

Q ss_pred             EEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCce--EEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHh
Q 004972           18 ITLINPPVNALAIPIVAGLKDKFEEATSRDDVK--AIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE   95 (721)
Q Consensus        18 i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~--~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~   95 (721)
                      |.|+.|    ++.++...+.+.|..++.++..+  .+.|.+.      |+|+..                ...++ +.|.
T Consensus        19 i~l~g~----I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSp------GG~v~~----------------g~~i~-~~i~   71 (182)
T PF00574_consen   19 IFLNGP----IDEESANRLISQLLYLENEDKNKPINIYINSP------GGDVDA----------------GLAIY-DAIR   71 (182)
T ss_dssp             EEEESS----BSHHHHHHHHHHHHHHHHHTSSSEEEEEEEEC------EBCHHH----------------HHHHH-HHHH
T ss_pred             EEECCc----cCHHHHHHHHHHHHHHhccCCCceEEEEEcCC------CCccHH----------------HHHHH-HHHH
Confidence            444444    78899999999988885333222  2333443      444322                22445 6688


Q ss_pred             hCCCcEEEEECCcccccchHhhhhcCE--EEeeCCceEeCcccccCcccc-------c-----------cccccc--cCH
Q 004972           96 DCKKPIVAAVEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPG-------T-----------QRLPRL--VGL  153 (721)
Q Consensus        96 ~~~~p~Iaav~G~a~GgG~~lalacD~--ria~~~a~~~~pe~~~Gl~P~-------~-----------~~l~r~--~G~  153 (721)
                      .++.|++..+.|.|.+.|.-++++||.  |++.+++.|.+.+...+....       .           ..+...  ...
T Consensus        72 ~~~~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~  151 (182)
T PF00574_consen   72 SSKAPVTTVVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLSK  151 (182)
T ss_dssp             HSSSEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-H
T ss_pred             hcCCCeEEEEeCccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCcH
Confidence            899999999999999999999999999  899999999998886554331       0           111112  233


Q ss_pred             HHHHHHHHcCCCcCHHHHHHcCCccEEcC
Q 004972          154 SKAIEMMLLSKSITSEEGWKLGLIDAVVT  182 (721)
Q Consensus       154 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~  182 (721)
                      ....+++-...-++|+||+++|+||+|+.
T Consensus       152 ~~i~~~~~~~~~l~a~EA~~~GiiD~I~~  180 (182)
T PF00574_consen  152 EEIEELMDRDTWLSAEEALEYGIIDEIIE  180 (182)
T ss_dssp             HHHHHHCSSTEEEEHHHHHHHTSSSEEES
T ss_pred             HHHHHHHhCCccccHHHHHHcCCCCEecc
Confidence            44456666667789999999999999975

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....

>PRK05442 malate dehydrogenase; Provisional

Probab=97.82  E-value=3.1e-05  Score=82.47  Aligned_cols=106  Identities=14%  Similarity=0.082  Sum_probs=69.0

Q ss_pred             ceeEEEEcC-CCCcHHHHHHHHHCCC-------ceEEEeCCHH--HHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCce
Q 004972          305 VRKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSE--YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK  374 (721)
Q Consensus       305 ~~kI~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~  374 (721)
                      ..||+|||+ |.+|+++|..++..|.       +++++|++++  .++.....+.+...              .......
T Consensus         4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~--------------~~~~~~~   69 (326)
T PRK05442          4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAF--------------PLLAGVV   69 (326)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhh--------------hhcCCcE
Confidence            459999998 9999999999988765       7999999643  23322111111110              0011122


Q ss_pred             e-ccCccccCCCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCeEEEecCCCCC
Q 004972          375 G-VLDYSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTSTID  424 (721)
Q Consensus       375 ~-~~~~~~l~~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~  424 (721)
                      . +.+++++++||+||.+.-              .+..+.+++..+|.++.+++++++..|....
T Consensus        70 i~~~~y~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvD  134 (326)
T PRK05442         70 ITDDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPAN  134 (326)
T ss_pred             EecChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchH
Confidence            2 456689999999997762              1344667777788888877787766554443

>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=97.82  E-value=8.9e-05  Score=73.07  Aligned_cols=140  Identities=20%  Similarity=0.175  Sum_probs=94.4

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEEC
Q 004972           27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE  106 (721)
Q Consensus        27 al~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav~  106 (721)
                      .++.++...+.+.|..++..+..+.|.|.=.    |.|+++..                ...++ +.|...+.||++.+.
T Consensus        31 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN----SpGG~v~a----------------g~aI~-d~i~~~~~~V~t~v~   89 (197)
T PRK14512         31 EINKDLSELFQEKILLLEALDSKKPIFVYID----SEGGDIDA----------------GFAIF-NMIRFVKPKVFTIGV   89 (197)
T ss_pred             EEcHHHHHHHHHHHHHHHhcCCCCCEEEEEE----CCCCCHHH----------------HHHHH-HHHHhCCCCEEEEEE
Confidence            4778889999999988876333344444211    23333321                12445 667789999999999


Q ss_pred             CcccccchHhhhhcCE--EEeeCCceEeCcccccCcccc-c-----------------ccccccc--CHHHHHHHHHcCC
Q 004972          107 GLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPG-T-----------------QRLPRLV--GLSKAIEMMLLSK  164 (721)
Q Consensus       107 G~a~GgG~~lalacD~--ria~~~a~~~~pe~~~Gl~P~-~-----------------~~l~r~~--G~~~a~~l~ltg~  164 (721)
                      |.|.+.|.-++++||-  |++.++++|.+....-++... +                 ..+...-  ......+++-...
T Consensus        90 G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~~~d~  169 (197)
T PRK14512         90 GLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDTDRDF  169 (197)
T ss_pred             eeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhhcCc
Confidence            9999999999999985  999999998765543332111 1                 0111122  2344556666778


Q ss_pred             CcCHHHHHHcCCccEEcCC-chHH
Q 004972          165 SITSEEGWKLGLIDAVVTS-EELL  187 (721)
Q Consensus       165 ~~~a~eA~~~Glv~~vv~~-~~l~  187 (721)
                      .++|+||+++||||+|++. +++.
T Consensus       170 ~lta~EA~~yGliD~I~~~~~~l~  193 (197)
T PRK14512        170 WLDSSSAVKYGLVFEVVETRLELE  193 (197)
T ss_pred             ccCHHHHHHcCCccEeecCcHHhH
Confidence            8999999999999999964 4443

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=97.81  E-value=5.1e-05  Score=80.77  Aligned_cols=104  Identities=16%  Similarity=0.109  Sum_probs=69.2

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCC-------ceEEEeCCH--HHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCcee
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG  375 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  375 (721)
                      -||+|||+ |.+|+++|..+...|+       +++++|+++  +.++.-...+.+....              .......
T Consensus         4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~--------------~~~~~~i   69 (323)
T TIGR01759         4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFP--------------LLAGVVA   69 (323)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhcccc--------------ccCCcEE
Confidence            48999998 9999999999998885       799999965  3233222111111000              0011122


Q ss_pred             -ccCccccCCCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCeEEEecCCCC
Q 004972          376 -VLDYSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTSTI  423 (721)
Q Consensus       376 -~~~~~~l~~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~  423 (721)
                       +.+++++++||+||.+.-              .+..+.+++..++.++.+++++++..|...
T Consensus        70 ~~~~~~~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv  132 (323)
T TIGR01759        70 TTDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPA  132 (323)
T ss_pred             ecChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH
Confidence             456789999999997762              134567777888889888677776655443

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit

Probab=97.80  E-value=0.00015  Score=71.40  Aligned_cols=135  Identities=17%  Similarity=0.169  Sum_probs=96.8

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEE--EeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEE
Q 004972           26 NALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA  103 (721)
Q Consensus        26 Nal~~~~~~~l~~~l~~~~~~~~v~~vVl--tg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Ia  103 (721)
                      ..++.++..++...+..++.++..+-+.+  .+.|      +|+..                ...++ +.+...+.|+..
T Consensus        37 ~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpG------G~v~~----------------g~aIy-d~m~~~~~~V~T   93 (200)
T CHL00028         37 QEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPG------GSVIS----------------GLAIY-DTMQFVKPDVHT   93 (200)
T ss_pred             CeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCC------cchhh----------------HHHHH-HHHHhcCCCEEE
Confidence            34899999999999999886544344443  4443      33211                12455 667889999999


Q ss_pred             EECCcccccchHhhhhcC--EEEeeCCceEeCcccccCcccc--c-----------------ccccccc--CHHHHHHHH
Q 004972          104 AVEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPG--T-----------------QRLPRLV--GLSKAIEMM  160 (721)
Q Consensus       104 av~G~a~GgG~~lalacD--~ria~~~a~~~~pe~~~Gl~P~--~-----------------~~l~r~~--G~~~a~~l~  160 (721)
                      .+-|.|.+.|.-|++++|  .|++.++++|.+.....|..-|  +                 ..+...-  ......+++
T Consensus        94 v~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~~~  173 (200)
T CHL00028         94 ICLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISEDM  173 (200)
T ss_pred             EEEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHh
Confidence            999999999999999999  6999999999987765552222  0                 1111122  234445666


Q ss_pred             HcCCCcCHHHHHHcCCccEEcCC
Q 004972          161 LLSKSITSEEGWKLGLIDAVVTS  183 (721)
Q Consensus       161 ltg~~~~a~eA~~~Glv~~vv~~  183 (721)
                      -....++|+||+++||||+|+.+
T Consensus       174 ~r~~~lta~EA~eyGliD~I~~~  196 (200)
T CHL00028        174 ERDVFMSATEAKAYGIVDLVAVN  196 (200)
T ss_pred             hcCccCCHHHHHHcCCCcEEeec
Confidence            77778999999999999999854

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=97.79  E-value=2e-05  Score=76.85  Aligned_cols=114  Identities=14%  Similarity=0.102  Sum_probs=74.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|+|||.|.+|..+|..+..-|.+|+.||++........           .             .... ..++ +.++.
T Consensus        37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~-----------~-------------~~~~-~~~l~ell~~   91 (178)
T PF02826_consen   37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGAD-----------E-------------FGVE-YVSLDELLAQ   91 (178)
T ss_dssp             SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHH-----------H-------------TTEE-ESSHHHHHHH
T ss_pred             CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcc-----------c-------------ccce-eeehhhhcch
Confidence            6899999999999999999999999999999987643110           0             0122 2344 55788


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccCC-CCcEEEecCC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSS-QDRIIGAHFF  444 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~~-~~r~ig~h~~  444 (721)
                      ||+|+.++|-+.+...-+=++....++++++|+..+-+  +.-..+.+.+.. +-...++..|
T Consensus        92 aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~  154 (178)
T PF02826_consen   92 ADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVF  154 (178)
T ss_dssp             -SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-
T ss_pred             hhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECC
Confidence            99999999976665444445666778999988754444  333455555542 2233444443

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=97.79  E-value=0.00012  Score=83.64  Aligned_cols=129  Identities=16%  Similarity=0.128  Sum_probs=83.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|+|||.|.||..+|..+...|++|+.||++... +...           ..+             +... ++ +.+++
T Consensus       141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-----------~~g-------------~~~~-~l~ell~~  194 (526)
T PRK13581        141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAA-----------QLG-------------VELV-SLDELLAR  194 (526)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hcC-------------CEEE-cHHHHHhh
Confidence            58999999999999999999999999999986432 1110           001             2222 34 56789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccCC-CCcEEEecCC--CC-----CCCCCeeE
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSS-QDRIIGAHFF--SP-----AHVMPLLE  454 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~~-~~r~ig~h~~--~p-----~~~~~lvE  454 (721)
                      ||+|+.++|-+.+.+.-+-.+....++++++++..+-+  +.-..+.+.+.. .-...++..|  .|     -+..+.|-
T Consensus       195 aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi  274 (526)
T PRK13581        195 ADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVV  274 (526)
T ss_pred             CCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCee
Confidence            99999999977776554446677788999988754444  333455555532 2233444433  22     33445566


Q ss_pred             EecCCC
Q 004972          455 IVRTER  460 (721)
Q Consensus       455 iv~~~~  460 (721)
                      ++|+-.
T Consensus       275 lTPHia  280 (526)
T PRK13581        275 VTPHLG  280 (526)
T ss_pred             EcCccc
Confidence            777544

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=97.77  E-value=0.0016  Score=70.84  Aligned_cols=185  Identities=12%  Similarity=0.072  Sum_probs=107.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceE------EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVV------LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  379 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~------l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  379 (721)
                      ++|+|||.|.+|.+.|..+...|++|+      .+|.+.+.-+.+.           +.|             ....+..
T Consensus        37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~-----------~dG-------------F~v~~~~   92 (487)
T PRK05225         37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKAT-----------ENG-------------FKVGTYE   92 (487)
T ss_pred             CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHH-----------hcC-------------CccCCHH
Confidence            689999999999999999999999988      4444443433321           112             2222223


Q ss_pred             cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCC----------C
Q 004972          380 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAH----------V  449 (721)
Q Consensus       380 ~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~----------~  449 (721)
                      ++++.||+|+..+|+.  ....+++++.+.+++++.+.- +-+..+....-..+..-.++-+-|-.|-+          -
T Consensus        93 Ea~~~ADvVviLlPDt--~q~~v~~~i~p~LK~Ga~L~f-sHGFni~~~~i~~~~dvdVimvAPKgpG~~vR~~y~~G~G  169 (487)
T PRK05225         93 ELIPQADLVINLTPDK--QHSDVVRAVQPLMKQGAALGY-SHGFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFG  169 (487)
T ss_pred             HHHHhCCEEEEcCChH--HHHHHHHHHHhhCCCCCEEEe-cCCceeeeCceeCCCCCcEEEECCCCCCchHHHHHhcCCC
Confidence            6689999999999966  367788999999999998853 33333332211111122344333432221          1


Q ss_pred             CCeeEEec-CCCCCHHHHHHHHHHHHHcCCe---eEEE--cC--CCchhhhh-hhhHHH---HH--HHHHHHcCCCHHHH
Q 004972          450 MPLLEIVR-TERTSAQVILDLMTVGKIIKKV---PVVV--GN--CTGFAVNR-AFFPYS---QS--ARLLVSLGVDVFRI  515 (721)
Q Consensus       450 ~~lvEiv~-~~~t~~e~~~~~~~l~~~lG~~---~v~v--~d--~~gfi~nR-l~~~~~---~E--a~~l~~~Gv~~~~I  515 (721)
                      .|.+-.|- -...+..+.+.+..+...+|..   ++..  .+  ..-....| +++..+   .+  --.++++|++|++-
T Consensus       170 vp~l~AV~~~qD~~g~a~~~ala~a~~iG~~ragv~~ttf~~E~~sDL~GEq~vLcG~~~~~~~~~Fe~lve~G~~pe~A  249 (487)
T PRK05225        170 VPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCGMLQAGSLLCFDKLVAEGTDPAYA  249 (487)
T ss_pred             ceEEEEEeecCCCCchHHHHHHHHHHHhCCCccceeecchHHHHhhcchhhHHHHHhHHHHHHHHHHHHHHHcCCCHHHH
Confidence            12222222 1345667889999999999976   2221  11  11122233 233333   12  23577889988875


Q ss_pred             HH
Q 004972          516 DS  517 (721)
Q Consensus       516 D~  517 (721)
                      -.
T Consensus       250 ~k  251 (487)
T PRK05225        250 EK  251 (487)
T ss_pred             HH
Confidence            44

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=97.76  E-value=0.0001  Score=81.03  Aligned_cols=104  Identities=15%  Similarity=0.157  Sum_probs=73.4

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHC-------CC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCce-
Q 004972          306 RKVAVIGG-GLMGSGIATAHILN-------NI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK-  374 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~-------G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~-  374 (721)
                      -||+|||+ |.+|.++|..++..       |+  +++++|++++.++.-.-.+.+....+              +..+. 
T Consensus       101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~--------------~~~v~i  166 (444)
T PLN00112        101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPL--------------LREVSI  166 (444)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhh--------------cCceEE
Confidence            58999999 99999999999988       66  89999999998776544333322111              11233 


Q ss_pred             eccCccccCCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCeEEEecCCCC
Q 004972          375 GVLDYSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTSTI  423 (721)
Q Consensus       375 ~~~~~~~l~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~  423 (721)
                      .+.+++++++||+||.+.--              +..+.+++..+|.++..++++++..+...
T Consensus       167 ~~~~ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPv  229 (444)
T PLN00112        167 GIDPYEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPC  229 (444)
T ss_pred             ecCCHHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcH
Confidence            24667999999999987621              34456667777777666777776655443

>PLN02928 oxidoreductase family protein

Probab=97.75  E-value=0.00013  Score=78.65  Aligned_cols=141  Identities=13%  Similarity=0.084  Sum_probs=83.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|+|||.|.||..+|..+...|.+|+.||++........      +.  ......     ...........++ +.+++
T Consensus       160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~------~~--~~~~~~-----~~~~~~~~~~~~L~ell~~  226 (347)
T PLN02928        160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDG------LL--IPNGDV-----DDLVDEKGGHEDIYEFAGE  226 (347)
T ss_pred             CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhh------hc--cccccc-----cccccccCcccCHHHHHhh
Confidence            5899999999999999999999999999999743211100      00  000000     0000000012234 56799


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccCC-CCcEEEecCCC--------CCCCCCee
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSS-QDRIIGAHFFS--------PAHVMPLL  453 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~~-~~r~ig~h~~~--------p~~~~~lv  453 (721)
                      ||+|+.++|-+.+...-+=++....++++++|+..+-+  +.-..+.+.+.. .-...++..|.        |.+..+.+
T Consensus       227 aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nv  306 (347)
T PLN02928        227 ADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNV  306 (347)
T ss_pred             CCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCE
Confidence            99999999987776554446677778999988754444  333455555542 22334445442        22334556


Q ss_pred             EEecCC
Q 004972          454 EIVRTE  459 (721)
Q Consensus       454 Eiv~~~  459 (721)
                      -++|+-
T Consensus       307 iiTPHi  312 (347)
T PLN02928        307 IITPHV  312 (347)
T ss_pred             EECCcC
Confidence            666653

>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=97.71  E-value=0.00025  Score=75.40  Aligned_cols=160  Identities=21%  Similarity=0.280  Sum_probs=102.9

Q ss_pred             cEEEEEeCCCC---CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHH
Q 004972           14 GVAIITLINPP---VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV   90 (721)
Q Consensus        14 ~v~~i~l~~p~---~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~   90 (721)
                      .|++|.++.+=   .+.+..--.+.+.+.++.+..++++++|||.=.    |.|+....             .....+.+
T Consensus        60 ~Iavi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk~vvL~in----SPGG~v~a-------------s~~i~~~l  122 (317)
T COG0616          60 VIAVIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVKAVVLRIN----SPGGSVVA-------------SELIARAL  122 (317)
T ss_pred             EEEEEEeeeeeecCCCccccccHHHHHHHHHHHhcCCCCceEEEEEE----CcCCchhH-------------HHHHHHHH
Confidence            58888886651   122212235677778888899999999999632    22332211             01122333


Q ss_pred             HHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc------------------------cc-
Q 004972           91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG------------------------TQ-  145 (721)
Q Consensus        91 ~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~------------------------~~-  145 (721)
                       +.+..-. ||++.|++.|..||.-+|++||.+||++++..|--.+..+. |.                        +. 
T Consensus       123 -~~l~~~~-PV~v~v~~~AASGGY~IA~aAd~I~a~p~si~GSIGVi~~~-~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~  199 (317)
T COG0616         123 -KRLRAKK-PVVVSVGGYAASGGYYIALAADKIVADPSSITGSIGVISGA-PNFEELLEKLGVEKEVITAGEYKDILSPF  199 (317)
T ss_pred             -HHHhhcC-CEEEEECCeecchhhhhhccCCEEEecCCceeeeceeEEec-CCHHHHHHhcCCceeeeeccccccccCcc
Confidence             3344444 99999999999999999999999999999988876554432 21                        00 


Q ss_pred             -ccc------------------------cccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHH
Q 004972          146 -RLP------------------------RLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLW  193 (721)
Q Consensus       146 -~l~------------------------r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~  193 (721)
                       -++                        .+-.......-+.+|+.+++++|++.||||++...++....+...
T Consensus       200 ~~~t~e~~~~~q~~~~e~y~~F~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~~~av~~~~~~  272 (317)
T COG0616         200 RPLTEEEREILQKEIDETYDEFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGLDDAVKDAAEL  272 (317)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCCHHHHHHHHHHh
Confidence             000                        011122223466799999999999999999998665554444443

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=97.67  E-value=7e-05  Score=79.80  Aligned_cols=103  Identities=16%  Similarity=0.073  Sum_probs=67.3

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCC-------ceEEEeCCHHH--HHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCcee
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSEY--LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG  375 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  375 (721)
                      .||+|||+ |.+|+++|..++..|.       +++++|++++.  ++.-...+.+...              .....+..
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~--------------~~~~~~~i   68 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAF--------------PLLAEIVI   68 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccc--------------cccCceEE
Confidence            59999999 9999999999998886       79999996432  2221111111000              00111222


Q ss_pred             -ccCccccCCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972          376 -VLDYSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTST  422 (721)
Q Consensus       376 -~~~~~~l~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~  422 (721)
                       +.+++++++||+||.+.--              +..+.+++..++.++.+++++++..|..
T Consensus        69 ~~~~~~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNP  130 (322)
T cd01338          69 TDDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNP  130 (322)
T ss_pred             ecCcHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCc
Confidence             4566899999999987621              3446777777888888667766655543

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=97.66  E-value=0.00013  Score=77.16  Aligned_cols=99  Identities=18%  Similarity=0.267  Sum_probs=65.0

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceec-c-C--
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-L-D--  378 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~-~--  378 (721)
                      +||+|||+ |.+|+++|..++..|+  +++++|++  .++.-.-.+.        ...        ..-.+..+ . +  
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~--------~~~--------~~~~i~~~~~~~~~   62 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLS--------HIN--------TPAKVTGYLGPEEL   62 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhH--------hCC--------CcceEEEecCCCch
Confidence            38999999 9999999999998885  89999998  2221110111        110        00134432 2 2  


Q ss_pred             ccccCCCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCeEEEecCCCC
Q 004972          379 YSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTSTI  423 (721)
Q Consensus       379 ~~~l~~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~  423 (721)
                      ++++++||+||.+.-              .|..+.+++..++.++. ++++++..|...
T Consensus        63 y~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~-p~a~vivvtNPv  120 (310)
T cd01337          63 KKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKAC-PKALILIISNPV  120 (310)
T ss_pred             HHhcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCch
Confidence            689999999998762              14456667777788875 566666555444

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=97.66  E-value=0.00011  Score=77.78  Aligned_cols=98  Identities=17%  Similarity=0.286  Sum_probs=65.0

Q ss_pred             eEEEEcC-CCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCcee-c-cC--c
Q 004972          307 KVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-V-LD--Y  379 (721)
Q Consensus       307 kI~VIG~-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~-~~--~  379 (721)
                      ||+|||+ |.+|+++|..++..++  +++++|+++ ....+.+ +        ....        ....+.. + ++  +
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~-a~g~a~D-L--------~~~~--------~~~~i~~~~~~~~~~   62 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG-AAGVAAD-L--------SHIP--------TAASVKGFSGEEGLE   62 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC-CcEEEch-h--------hcCC--------cCceEEEecCCCchH
Confidence            7999999 9999999999998886  899999987 2111110 0        1110        0013443 2 23  6


Q ss_pred             cccCCCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCeEEEecCCCC
Q 004972          380 SEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTSTI  423 (721)
Q Consensus       380 ~~l~~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~  423 (721)
                      +++++||+||.+.-              .+..+.+++..++.++. ++++++..|...
T Consensus        63 ~~~~daDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~-p~~iiivvsNPv  119 (312)
T TIGR01772        63 NALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESC-PKAMILVITNPV  119 (312)
T ss_pred             HHcCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhC-CCeEEEEecCch
Confidence            89999999997763              24556677777788875 566665545444

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP

Probab=97.64  E-value=0.0004  Score=68.22  Aligned_cols=135  Identities=19%  Similarity=0.159  Sum_probs=91.9

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEEC
Q 004972           27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE  106 (721)
Q Consensus        27 al~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav~  106 (721)
                      .++..+...+...+..++.++..+-|.+.=.    |.|+|+.                ....++ +.+...+.|+...+-
T Consensus        34 ~I~~~~~~~ii~~L~~l~~~~~~~~i~l~In----SpGG~v~----------------~g~~I~-d~l~~~~~~v~t~~~   92 (191)
T TIGR00493        34 EVNDSVANLIVAQLLFLEAEDPEKDIYLYIN----SPGGSIT----------------AGLAIY-DTMQFIKPDVSTICI   92 (191)
T ss_pred             EEChHHHHHHHHHHHHhhccCCCCCEEEEEE----CCCCCHH----------------HHHHHH-HHHHhcCCCEEEEEE
Confidence            3667788888888888886654444444211    2234332                122444 556777778888888


Q ss_pred             CcccccchHhhhhcC--EEEeeCCceEeCcccccCcccc-c-----------------ccccccc--CHHHHHHHHHcCC
Q 004972          107 GLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPG-T-----------------QRLPRLV--GLSKAIEMMLLSK  164 (721)
Q Consensus       107 G~a~GgG~~lalacD--~ria~~~a~~~~pe~~~Gl~P~-~-----------------~~l~r~~--G~~~a~~l~ltg~  164 (721)
                      |.|.+.|.-+++++|  .|++.+++.|.+.+..-|.... +                 ..+.+.-  ......+++-.+.
T Consensus        93 G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~~~  172 (191)
T TIGR00493        93 GQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTERDF  172 (191)
T ss_pred             EeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCc
Confidence            999999998888665  6999999999997664332211 0                 1122232  3455667777888


Q ss_pred             CcCHHHHHHcCCccEEcC
Q 004972          165 SITSEEGWKLGLIDAVVT  182 (721)
Q Consensus       165 ~~~a~eA~~~Glv~~vv~  182 (721)
                      .++|+||+++||||+|+.
T Consensus       173 ~lta~EA~~~GliD~ii~  190 (191)
T TIGR00493       173 FMSAEEAKEYGLIDSVLT  190 (191)
T ss_pred             cCcHHHHHHcCCccEEec
Confidence            999999999999999974

This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=97.64  E-value=0.00027  Score=76.63  Aligned_cols=104  Identities=17%  Similarity=0.193  Sum_probs=70.3

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCC-------ceEEE--eCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCce-
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLK--EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK-  374 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~-------~V~l~--d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~-  374 (721)
                      -||+|||+ |.+|+++|..++..|+       .++++  |++++.++.-.-.+.+....              .+..+. 
T Consensus        45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~--------------~~~~v~i  110 (387)
T TIGR01757        45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYP--------------LLREVSI  110 (387)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhh--------------hcCceEE
Confidence            48999999 9999999999998875       24445  88888766543333322111              112233 


Q ss_pred             eccCccccCCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCeEEEecCCCC
Q 004972          375 GVLDYSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTSTI  423 (721)
Q Consensus       375 ~~~~~~~l~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~  423 (721)
                      .+.+++++++||+||.+.--              +..+.+++...|.++.+++++++..|...
T Consensus       111 ~~~~y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPv  173 (387)
T TIGR01757       111 GIDPYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPC  173 (387)
T ss_pred             ecCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcH
Confidence            24567899999999986621              34466677777888887888776655433

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.60  E-value=0.00011  Score=76.36  Aligned_cols=71  Identities=17%  Similarity=0.222  Sum_probs=55.0

Q ss_pred             eeEEEEcCC-CCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972          306 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  384 (721)
                      ++|+|||.| .||.+||..|.++|++|++|++....++                                     +.+++
T Consensus       160 k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~-------------------------------------e~~~~  202 (301)
T PRK14194        160 KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAK-------------------------------------ALCRQ  202 (301)
T ss_pred             CEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHH-------------------------------------HHHhc
Confidence            589999996 9999999999999999999986543211                                     33578


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  420 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t  420 (721)
                      ||+||.|++....+...+       +++++++++.+
T Consensus       203 ADIVIsavg~~~~v~~~~-------ik~GaiVIDvg  231 (301)
T PRK14194        203 ADIVVAAVGRPRLIDADW-------LKPGAVVIDVG  231 (301)
T ss_pred             CCEEEEecCChhcccHhh-------ccCCcEEEEec
Confidence            999999998554433322       78999988755

>PLN00106 malate dehydrogenase

Probab=97.59  E-value=0.00018  Score=76.38  Aligned_cols=117  Identities=17%  Similarity=0.280  Sum_probs=71.3

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCcee-ccC---
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLD---  378 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~---  378 (721)
                      .||+|||+ |.+|+.+|..++..++  +++++|+++.. ..+. .+.+        .       .. .-.+.. +.+   
T Consensus        19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~-g~a~-Dl~~--------~-------~~-~~~i~~~~~~~d~   80 (323)
T PLN00106         19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTP-GVAA-DVSH--------I-------NT-PAQVRGFLGDDQL   80 (323)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCC-eeEc-hhhh--------C-------Cc-CceEEEEeCCCCH
Confidence            59999999 9999999999998776  89999998711 1010 0000        0       00 012322 223   


Q ss_pred             ccccCCCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCeEEEecCCCCC-----HHH-HhcccC-CCCc
Q 004972          379 YSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTSTID-----LNI-VGEKTS-SQDR  437 (721)
Q Consensus       379 ~~~l~~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~-----i~~-l~~~~~-~~~r  437 (721)
                      ++++++||+||.+.-              .+..+.+++.+.+.++. ++.+++..|....     ++. +..... .|.+
T Consensus        81 ~~~l~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~  159 (323)
T PLN00106         81 GDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHC-PNALVNIISNPVNSTVPIAAEVLKKAGVYDPKK  159 (323)
T ss_pred             HHHcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCCccccHHHHHHHHHHcCCCCcce
Confidence            478999999997762              24556677777788776 5555554444443     232 223332 3556


Q ss_pred             EEEe
Q 004972          438 IIGA  441 (721)
Q Consensus       438 ~ig~  441 (721)
                      ++|+
T Consensus       160 viG~  163 (323)
T PLN00106        160 LFGV  163 (323)
T ss_pred             EEEE
Confidence            6664

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=97.58  E-value=0.00038  Score=76.76  Aligned_cols=100  Identities=16%  Similarity=0.201  Sum_probs=70.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|||||.|.+|..+|..+..-|.+|+.||+++...                .            .......++ +.++.
T Consensus       152 ktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~----------------~------------~~~~~~~~l~ell~~  203 (409)
T PRK11790        152 KTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP----------------L------------GNARQVGSLEELLAQ  203 (409)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc----------------c------------CCceecCCHHHHHhh
Confidence            689999999999999999999999999999864210                0            011222344 55799


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS  433 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~  433 (721)
                      ||+|+.++|-+.+.+.-+=++....++++++|+..+-+  +.-..+.+.+.
T Consensus       204 sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~  254 (409)
T PRK11790        204 SDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALK  254 (409)
T ss_pred             CCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHH
Confidence            99999999977765554446667778999988743333  33345555554

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=97.57  E-value=0.00013  Score=76.57  Aligned_cols=89  Identities=20%  Similarity=0.228  Sum_probs=61.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|+|||+|.||.++|..|...|.+|++++++++..+.+.           +.+. .         .+. .+++ +.+++
T Consensus       152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~-----------~~g~-~---------~~~-~~~l~~~l~~  209 (287)
T TIGR02853       152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARIT-----------EMGL-I---------PFP-LNKLEEKVAE  209 (287)
T ss_pred             CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HCCC-e---------eec-HHHHHHHhcc
Confidence            5899999999999999999999999999999987654421           1110 0         011 1122 45689


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  421 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts  421 (721)
                      +|+||.++|...-     -.+..+.+++++++++.+|
T Consensus       210 aDiVint~P~~ii-----~~~~l~~~k~~aliIDlas  241 (287)
T TIGR02853       210 IDIVINTIPALVL-----TADVLSKLPKHAVIIDLAS  241 (287)
T ss_pred             CCEEEECCChHHh-----CHHHHhcCCCCeEEEEeCc
Confidence            9999999984321     1234455677887776555

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=97.56  E-value=0.00042  Score=73.69  Aligned_cols=109  Identities=15%  Similarity=0.090  Sum_probs=75.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|||||.|.+|..+|..+..-|.+|..||+.....               ..+             .. ..++ +.++.
T Consensus       146 ktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~---------------~~~-------------~~-~~~l~ell~~  196 (311)
T PRK08410        146 KKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK---------------NEE-------------YE-RVSLEELLKT  196 (311)
T ss_pred             CEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc---------------ccC-------------ce-eecHHHHhhc
Confidence            689999999999999999998899999999863210               000             11 1234 55799


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccCC-CCcEEEecCC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSS-QDRIIGAHFF  444 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~~-~~r~ig~h~~  444 (721)
                      ||+|+.++|-+.+.+.-+=++....++++++|+..+-+  +.-..+.+.+.. .-. .++..|
T Consensus       197 sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~  258 (311)
T PRK08410        197 SDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVL  258 (311)
T ss_pred             CCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecC
Confidence            99999999977776555556677778999988743333  344456565543 223 555554

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=97.56  E-value=8e-05  Score=78.60  Aligned_cols=98  Identities=28%  Similarity=0.330  Sum_probs=65.0

Q ss_pred             EEcCCCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCCCE
Q 004972          310 VIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDM  387 (721)
Q Consensus       310 VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDl  387 (721)
                      |||+|.+|+++|..++..++  +++++|++++.++.....+.+........            ..+. +.+++++++||+
T Consensus         1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~------------~~i~-~~~~~~~~daDi   67 (299)
T TIGR01771         1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTP------------KKIR-SGDYSDCKDADL   67 (299)
T ss_pred             CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCC------------eEEe-cCCHHHHCCCCE
Confidence            69999999999999998886  79999999877655433333221100000            1233 356789999999


Q ss_pred             EEEcccC--------------ChHHHHHHHHHHHhhCCCCeEEEecCC
Q 004972          388 VIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTS  421 (721)
Q Consensus       388 VIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts  421 (721)
                      ||.+.-.              +..+.+++..++.++. ++++++..|.
T Consensus        68 vVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~-p~~~vivvsN  114 (299)
T TIGR01771        68 VVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSG-FDGIFLVATN  114 (299)
T ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEeCC
Confidence            9987632              3445666777787774 5565554443

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=97.56  E-value=0.00035  Score=72.77  Aligned_cols=80  Identities=24%  Similarity=0.211  Sum_probs=53.8

Q ss_pred             CCceeEEEEcCCCCcHHHHHHHHHC--CCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc
Q 004972          303 RGVRKVAVIGGGLMGSGIATAHILN--NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  379 (721)
Q Consensus       303 ~~~~kI~VIG~G~mG~~iA~~la~~--G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  379 (721)
                      |...||||||+|.||..++..+.+.  +++|+ ++|+++++.+...+.                      .+.....+++
T Consensus         4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~----------------------~g~~~~~~~~   61 (271)
T PRK13302          4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWG----------------------LRRPPPVVPL   61 (271)
T ss_pred             CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHh----------------------cCCCcccCCH
Confidence            3457899999999999999999873  77776 899998875543210                      0111123344


Q ss_pred             -cccCCCCEEEEcccCChHHHHHHHHHH
Q 004972          380 -SEFKDVDMVIEAVIESVPLKQKIFSEL  406 (721)
Q Consensus       380 -~~l~~aDlVIeavpe~~~~k~~v~~~l  406 (721)
                       +.+.++|+|++|.|.+.  -.++..+.
T Consensus        62 eell~~~D~Vvi~tp~~~--h~e~~~~a   87 (271)
T PRK13302         62 DQLATHADIVVEAAPASV--LRAIVEPV   87 (271)
T ss_pred             HHHhcCCCEEEECCCcHH--HHHHHHHH
Confidence             34578999999999543  34444443

>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase

Probab=97.53  E-value=0.0015  Score=68.94  Aligned_cols=165  Identities=12%  Similarity=0.014  Sum_probs=93.2

Q ss_pred             CCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCC-CCHHHHHHhhcCceeccCccccCCCCEEEEccc
Q 004972          315 LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVLDYSEFKDVDMVIEAVI  393 (721)
Q Consensus       315 ~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~l~~aDlVIeavp  393 (721)
                      .||+.+|..|+++|++|++++++ +..+...+           .|. +....-......+..+++.+.+.++|+||.|++
T Consensus         1 aiG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~-----------~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~D~iiv~vK   68 (293)
T TIGR00745         1 AVGSLYGAYLARAGHDVTLLARG-EQLEALNQ-----------EGLRIVSLGGEFQFRPVSAATSPEELPPADLVIITVK   68 (293)
T ss_pred             CchHHHHHHHHhCCCcEEEEecH-HHHHHHHH-----------CCcEEEecCCcEEEcccccccChhhcCCCCEEEEecc
Confidence            38999999999999999999997 44444321           110 000000000002333455555778999999998


Q ss_pred             CChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHH-HhcccCCCCcEEEec-CCCCCCCCCe-eE-------EecCCCCCH
Q 004972          394 ESVPLKQKIFSELEKACPPHCILATNTSTIDLNI-VGEKTSSQDRIIGAH-FFSPAHVMPL-LE-------IVRTERTSA  463 (721)
Q Consensus       394 e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~-l~~~~~~~~r~ig~h-~~~p~~~~~l-vE-------iv~~~~t~~  463 (721)
                        .....++++.+.+++.++++|++...++...+ +...++ +.++++.- ++......|. ++       .+.....+.
T Consensus        69 --s~~~~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~~~~-~~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~~~  145 (293)
T TIGR00745        69 --AYQTEEAAALLLPLIGKNTKVLFLQNGLGHEERLRELLP-ARRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVGEN  145 (293)
T ss_pred             --chhHHHHHHHhHhhcCCCCEEEEccCCCCCHHHHHHHhC-ccCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCCch
Confidence              44567888999999999898888777776544 444443 23444322 1111111111 11       111111122


Q ss_pred             HHHHHHHHHHHHcCCeeEEEcCCCchhhhhh
Q 004972          464 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRA  494 (721)
Q Consensus       464 e~~~~~~~l~~~lG~~~v~v~d~~gfi~nRl  494 (721)
                      +..+.+...++..|.......|.-+.+...+
T Consensus       146 ~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl  176 (293)
T TIGR00745       146 EAVEALAELLNEAGIPAELHGDILAAIWKKL  176 (293)
T ss_pred             HHHHHHHHHHHhCCCCCEecchHHHHHHHHH
Confidence            5566777777777766666666544444443

This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=97.53  E-value=0.00081  Score=65.02  Aligned_cols=75  Identities=17%  Similarity=0.199  Sum_probs=48.5

Q ss_pred             eEEEEcCCCCcHHHHH--HHHHC----CCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-
Q 004972          307 KVAVIGGGLMGSGIAT--AHILN----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  379 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~--~la~~----G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-  379 (721)
                      ||+|||+|..-.+.-.  .+...    +-+|+++|+|+++++....-.+...    +....+        -++..++|. 
T Consensus         1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~----~~~~~~--------~~v~~ttd~~   68 (183)
T PF02056_consen    1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMV----EEAGAD--------LKVEATTDRR   68 (183)
T ss_dssp             EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHH----HHCTTS--------SEEEEESSHH
T ss_pred             CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHH----HhcCCC--------eEEEEeCCHH
Confidence            7999999999777443  22222    3389999999999887654433332    221111        246778888 


Q ss_pred             cccCCCCEEEEccc
Q 004972          380 SEFKDVDMVIEAVI  393 (721)
Q Consensus       380 ~~l~~aDlVIeavp  393 (721)
                      +++++||+||.++-
T Consensus        69 eAl~gADfVi~~ir   82 (183)
T PF02056_consen   69 EALEGADFVINQIR   82 (183)
T ss_dssp             HHHTTESEEEE---
T ss_pred             HHhCCCCEEEEEee
Confidence            77999999997763

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=97.51  E-value=0.00062  Score=67.87  Aligned_cols=135  Identities=16%  Similarity=0.178  Sum_probs=92.1

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEE--EEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEE
Q 004972           26 NALAIPIVAGLKDKFEEATSRDDVKAI--VLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA  103 (721)
Q Consensus        26 Nal~~~~~~~l~~~l~~~~~~~~v~~v--Vltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Ia  103 (721)
                      ..++..+...+...|..++..+.-+-+  .|.+.|+...+|                      ..++ +.+...+.||..
T Consensus        61 ~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~aG----------------------laIy-d~m~~~~~~V~t  117 (221)
T PRK14514         61 TQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYAG----------------------LGIY-DTMQFISSDVAT  117 (221)
T ss_pred             CEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCCcchhhH----------------------HHHH-HHHHhcCCCEEE
Confidence            447788888888877777643322222  224444322221                      2445 667888999999


Q ss_pred             EECCcccccchHhhhhcCE--EEeeCCceEeCcccccCcccc-c-----------------cccccccC--HHHHHHHHH
Q 004972          104 AVEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPG-T-----------------QRLPRLVG--LSKAIEMML  161 (721)
Q Consensus       104 av~G~a~GgG~~lalacD~--ria~~~a~~~~pe~~~Gl~P~-~-----------------~~l~r~~G--~~~a~~l~l  161 (721)
                      .+-|.|.+.|.-|++++|.  |++.+++++.+....-|...- +                 ..+.+.-|  .....+++-
T Consensus       118 v~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~~~  197 (221)
T PRK14514        118 ICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWADSD  197 (221)
T ss_pred             EEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhh
Confidence            9999999999999999996  999999999887765333211 1                 11122223  344556677


Q ss_pred             cCCCcCHHHHHHcCCccEEcCC
Q 004972          162 LSKSITSEEGWKLGLIDAVVTS  183 (721)
Q Consensus       162 tg~~~~a~eA~~~Glv~~vv~~  183 (721)
                      ....++|+||+++||||+|+..
T Consensus       198 rd~wmtA~EA~eyGliD~Vi~~  219 (221)
T PRK14514        198 RDYWMTAQEAKEYGMIDEVLIK  219 (221)
T ss_pred             cCccCCHHHHHHcCCccEEeec
Confidence            7788999999999999999853

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=97.50  E-value=0.00028  Score=66.48  Aligned_cols=98  Identities=22%  Similarity=0.262  Sum_probs=61.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  385 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  385 (721)
                      +++.|+|.|..|.++|+.|...|..|+++|++|-++-++.           .             +.....+-.+++..+
T Consensus        24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~-----------~-------------dGf~v~~~~~a~~~a   79 (162)
T PF00670_consen   24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAA-----------M-------------DGFEVMTLEEALRDA   79 (162)
T ss_dssp             SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHH-----------H-------------TT-EEE-HHHHTTT-
T ss_pred             CEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhh-----------h-------------cCcEecCHHHHHhhC
Confidence            5799999999999999999999999999999997654432           1             122323222678999


Q ss_pred             CEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC---CCHHHHhcc
Q 004972          386 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST---IDLNIVGEK  431 (721)
Q Consensus       386 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~---~~i~~l~~~  431 (721)
                      |++|.+.-...-+..+-|+    .+++++|+++.++.   +.+..+.+.
T Consensus        80 di~vtaTG~~~vi~~e~~~----~mkdgail~n~Gh~d~Eid~~~L~~~  124 (162)
T PF00670_consen   80 DIFVTATGNKDVITGEHFR----QMKDGAILANAGHFDVEIDVDALEAN  124 (162)
T ss_dssp             SEEEE-SSSSSSB-HHHHH----HS-TTEEEEESSSSTTSBTHHHHHTC
T ss_pred             CEEEECCCCccccCHHHHH----HhcCCeEEeccCcCceeEeecccccc
Confidence            9999888654444444444    46899999865552   445555443

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>cd00704 MDH Malate dehydrogenase

Probab=97.49  E-value=0.00013  Score=77.66  Aligned_cols=102  Identities=17%  Similarity=0.151  Sum_probs=65.9

Q ss_pred             eEEEEcC-CCCcHHHHHHHHHCCC-------ceEEEeCCH--HHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCcee-
Q 004972          307 KVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-  375 (721)
Q Consensus       307 kI~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-  375 (721)
                      ||+|||+ |.+|+.+|..++..|+       +++++|+++  +.++.....+.+...              ........ 
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~--------------~~~~~~~i~   67 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAF--------------PLLKGVVIT   67 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcc--------------cccCCcEEe
Confidence            8999999 9999999999998764       499999987  543221111111000              00111122 


Q ss_pred             ccCccccCCCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972          376 VLDYSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTST  422 (721)
Q Consensus       376 ~~~~~~l~~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~ts~  422 (721)
                      +.+++++++||+||.+.-              .+..+.+++..++.++++++.+++..|..
T Consensus        68 ~~~~~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNP  128 (323)
T cd00704          68 TDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNP  128 (323)
T ss_pred             cChHHHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence            345688999999997662              14556777778888887566766655543

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=97.47  E-value=0.0008  Score=71.84  Aligned_cols=102  Identities=12%  Similarity=0.073  Sum_probs=70.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHH-HCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972          306 RKVAVIGGGLMGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  383 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  383 (721)
                      ++|||||.|.+|..+|..+. .-|.+|..||+........            ..             .+... ++ +.++
T Consensus       146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~~------------~~-------------~~~~~-~l~ell~  199 (323)
T PRK15409        146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEE------------RF-------------NARYC-DLDTLLQ  199 (323)
T ss_pred             CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhHH------------hc-------------CcEec-CHHHHHH
Confidence            68999999999999999987 6789999999864221000            00             11222 34 5579


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccC
Q 004972          384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS  433 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~  433 (721)
                      +||+|+.++|-+.+...-+=++....++++++++..+=+  +.-..+.+.+.
T Consensus       200 ~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~  251 (323)
T PRK15409        200 ESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQ  251 (323)
T ss_pred             hCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH
Confidence            999999999987776555546677778999988743323  33445555554

>PRK06932 glycerate dehydrogenase; Provisional

Probab=97.47  E-value=0.00074  Score=71.87  Aligned_cols=109  Identities=14%  Similarity=0.146  Sum_probs=74.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|||||.|.+|..+|..+..-|.+|+.||+....  .            ...+                ..++ +.++.
T Consensus       148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~------------~~~~----------------~~~l~ell~~  197 (314)
T PRK06932        148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--V------------CREG----------------YTPFEEVLKQ  197 (314)
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--c------------cccc----------------cCCHHHHHHh
Confidence            58999999999999999998889999999975321  0            0000                1233 55789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccCC-CCcEEEecCC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSS-QDRIIGAHFF  444 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~~-~~r~ig~h~~  444 (721)
                      ||+|+.++|-+.+...-+=++....++++++|+..+-+  +.-..+.+.+.. .-.-.++..|
T Consensus       198 sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~  260 (314)
T PRK06932        198 ADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVL  260 (314)
T ss_pred             CCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecC
Confidence            99999999977775544446677778999988743333  444566555542 2233445444

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=97.47  E-value=0.00048  Score=71.58  Aligned_cols=85  Identities=21%  Similarity=0.224  Sum_probs=57.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHC--CCc-eEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cc
Q 004972          306 RKVAVIGGGLMGSGIATAHILN--NIY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  381 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~--G~~-V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  381 (721)
                      +||+|||+|.||..++..+.+.  +++ +.++|+++++.+...+.          .             .....+++ +.
T Consensus         2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~----------~-------------~~~~~~~~~el   58 (265)
T PRK13304          2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASK----------T-------------GAKACLSIDEL   58 (265)
T ss_pred             CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHh----------c-------------CCeeECCHHHH
Confidence            5899999999999999999876  455 55899998876653210          0             12234455 33


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEE
Q 004972          382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCIL  416 (721)
Q Consensus       382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii  416 (721)
                      +.++|+|++|+|  .....++..++.+. ..+.++
T Consensus        59 l~~~DvVvi~a~--~~~~~~~~~~al~~-Gk~Vvv   90 (265)
T PRK13304         59 VEDVDLVVECAS--VNAVEEVVPKSLEN-GKDVII   90 (265)
T ss_pred             hcCCCEEEEcCC--hHHHHHHHHHHHHc-CCCEEE
Confidence            488999999998  55555665555442 344444

>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional

Probab=97.45  E-value=0.003  Score=64.66  Aligned_cols=136  Identities=17%  Similarity=0.153  Sum_probs=86.6

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEE
Q 004972           26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (721)
Q Consensus        26 Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav  105 (721)
                      -.++++-.+...+.++.+.+.. +-+|-|.=.++++. |.+-.+          .-......+.+ ..+...++|+|++|
T Consensus        77 G~~~~~g~rKa~R~~~lA~~~~-lPvV~lvDtpGa~~-g~~aE~----------~G~~~~ia~~~-~~~s~~~VP~IsVI  143 (256)
T PRK12319         77 GQPHPEGYRKALRLMKQAEKFG-RPVVTFINTAGAYP-GVGAEE----------RGQGEAIARNL-MEMSDLKVPIIAII  143 (256)
T ss_pred             CCCCHHHHHHHHHHHHHHHHcC-CCEEEEEECCCcCC-CHhHHh----------ccHHHHHHHHH-HHHhCCCCCEEEEE
Confidence            5677888888888888887543 44444433333332 332110          01122333444 44678899999999


Q ss_pred             CCcccccchHhhhhcCEEEeeCCceEeC--cccccCccccccccccccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCC
Q 004972          106 EGLALGGGLELAMGCHARIAAPKTQLGL--PELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS  183 (721)
Q Consensus       106 ~G~a~GgG~~lalacD~ria~~~a~~~~--pe~~~Gl~P~~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~  183 (721)
                      -|.|.|||......||++++.+++.++.  ||....+     .+...--...+.+.+    .+++.++.+.|+||+|+|+
T Consensus       144 ~G~~~gGgA~a~~~~D~v~m~~~a~~~v~~pe~~a~i-----l~~~~~~a~~aa~~~----~~~a~~l~~~g~iD~ii~e  214 (256)
T PRK12319        144 IGEGGSGGALALAVADQVWMLENTMYAVLSPEGFASI-----LWKDGSRATEAAELM----KITAGELLEMGVVDKVIPE  214 (256)
T ss_pred             eCCcCcHHHHHhhcCCEEEEecCceEEEcCHHHHHHH-----HhcCcccHHHHHHHc----CCCHHHHHHCCCCcEecCC
Confidence            9999999888888999999999988875  3322221     111111112223333    7799999999999999964

>PRK06487 glycerate dehydrogenase; Provisional

Probab=97.45  E-value=0.00056  Score=72.95  Aligned_cols=97  Identities=12%  Similarity=0.158  Sum_probs=69.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|||||.|.+|..+|..+..-|.+|+.||+.... ..                             .. ..++ +.++.
T Consensus       149 ktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~-~~-----------------------------~~-~~~l~ell~~  197 (317)
T PRK06487        149 KTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP-AR-----------------------------PD-RLPLDELLPQ  197 (317)
T ss_pred             CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc-cc-----------------------------cc-ccCHHHHHHh
Confidence            58999999999999999999889999999986321 00                             00 1133 55789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS  433 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~  433 (721)
                      ||+|+.++|-+.+...-+=++....++++++|+..+-+  +.-..+.+.+.
T Consensus       198 sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~  248 (317)
T PRK06487        198 VDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALR  248 (317)
T ss_pred             CCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH
Confidence            99999999977776555556677788999988743333  33345555554

>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]

Probab=97.43  E-value=0.00068  Score=67.79  Aligned_cols=107  Identities=26%  Similarity=0.382  Sum_probs=72.3

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcccc
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  382 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l  382 (721)
                      ..||.|||.|..|.+.|..+..+|.  +++++|.++++++...-.++        .|.     +--...++....|+..-
T Consensus        20 ~~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLq--------H~s-----~f~~~~~V~~~~Dy~~s   86 (332)
T KOG1495|consen   20 HNKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQ--------HGS-----AFLSTPNVVASKDYSVS   86 (332)
T ss_pred             CceEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhc--------ccc-----ccccCCceEecCccccc
Confidence            5799999999999999999998887  89999999998765322211        110     00011457777889888


Q ss_pred             CCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCeEEEecCCCCCH
Q 004972          383 KDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTSTIDL  425 (721)
Q Consensus       383 ~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i  425 (721)
                      +++++||...--              +.++.+.++.++.++ +|+++++..+....+
T Consensus        87 a~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~y-Spd~~llvvSNPVDi  142 (332)
T KOG1495|consen   87 ANSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKY-SPDCILLVVSNPVDI  142 (332)
T ss_pred             CCCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEecCchHH
Confidence            999999977631              334445555556555 566666544444443

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=97.43  E-value=0.00013  Score=79.26  Aligned_cols=110  Identities=12%  Similarity=0.098  Sum_probs=71.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|||||.|.||+.+|..+...|++|++||+.....+                +            ... ..++ +.+++
T Consensus       117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~----------------~------------~~~-~~~l~ell~~  167 (381)
T PRK00257        117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAE----------------G------------DGD-FVSLERILEE  167 (381)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccccc----------------c------------Ccc-ccCHHHHHhh
Confidence            5899999999999999999999999999997543210                0            011 1234 45689


Q ss_pred             CCEEEEcccCChH---HHHHHH-HHHHhhCCCCeEEEecCCCC--CHHHHhcccC-CCCcEEEecCC
Q 004972          385 VDMVIEAVIESVP---LKQKIF-SELEKACPPHCILATNTSTI--DLNIVGEKTS-SQDRIIGAHFF  444 (721)
Q Consensus       385 aDlVIeavpe~~~---~k~~v~-~~l~~~~~~~~ii~s~ts~~--~i~~l~~~~~-~~~r~ig~h~~  444 (721)
                      ||+|+.++|-..+   ....++ ++....++++++++..+-+-  ....+.+.+. ......++.-|
T Consensus       168 aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~  234 (381)
T PRK00257        168 CDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVW  234 (381)
T ss_pred             CCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCC
Confidence            9999999996543   233444 44566789999887544343  3345555443 22334445444

>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=97.42  E-value=0.00093  Score=65.73  Aligned_cols=136  Identities=18%  Similarity=0.268  Sum_probs=94.9

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCce--EEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEE
Q 004972           26 NALAIPIVAGLKDKFEEATSRDDVK--AIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA  103 (721)
Q Consensus        26 Nal~~~~~~~l~~~l~~~~~~~~v~--~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Ia  103 (721)
                      -.++.++-..+...+..++.++.-+  -+-|.+.|      +|+..                ...++ +.+...+.||..
T Consensus        34 ~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpG------G~v~~----------------GlaIy-d~m~~~~~~V~T   90 (201)
T PRK14513         34 TPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPG------GEVYA----------------GLAIY-DTMRYIKAPVST   90 (201)
T ss_pred             CEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCC------Cchhh----------------HHHHH-HHHHhcCCCEEE
Confidence            4578889889988888887643322  22334443      33221                12455 668889999999


Q ss_pred             EECCcccccchHhhhhcCE--EEeeCCceEeCcccccCcc---cc----c-----------cccccccC--HHHHHHHHH
Q 004972          104 AVEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVI---PG----T-----------QRLPRLVG--LSKAIEMML  161 (721)
Q Consensus       104 av~G~a~GgG~~lalacD~--ria~~~a~~~~pe~~~Gl~---P~----~-----------~~l~r~~G--~~~a~~l~l  161 (721)
                      .+.|.|.+.|.-|++++|-  |++.+++++-+....-|..   +.    .           ..+.+.-|  ...-.+++-
T Consensus        91 i~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~~~~  170 (201)
T PRK14513         91 ICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFRGNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLRDME  170 (201)
T ss_pred             EEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhc
Confidence            9999999999999999995  9999999998877654432   11    0           11122223  344456666


Q ss_pred             cCCCcCHHHHHHcCCccEEcCCc
Q 004972          162 LSKSITSEEGWKLGLIDAVVTSE  184 (721)
Q Consensus       162 tg~~~~a~eA~~~Glv~~vv~~~  184 (721)
                      ....++|+||+++||||+|+++.
T Consensus       171 rd~~msa~EA~eyGliD~I~~~~  193 (201)
T PRK14513        171 RDYFMSPEEAKAYGLIDSVIEPT  193 (201)
T ss_pred             cCcccCHHHHHHcCCCcEEeccC
Confidence            77789999999999999998653

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=97.42  E-value=0.00092  Score=73.92  Aligned_cols=103  Identities=21%  Similarity=0.258  Sum_probs=67.6

Q ss_pred             eeEEEEcCCCC-cHHHHHHHHHC-----CCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc
Q 004972          306 RKVAVIGGGLM-GSGIATAHILN-----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  379 (721)
Q Consensus       306 ~kI~VIG~G~m-G~~iA~~la~~-----G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  379 (721)
                      .||+|||+|.- ...+...+++.     +-+|+++|+++++++....-.+    ...+....+        -++..|+|.
T Consensus         1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~----~~~~~~g~~--------~~v~~ttD~   68 (425)
T cd05197           1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAK----RYVEEVGAD--------IKFEKTMDL   68 (425)
T ss_pred             CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHH----HHHHhhCCC--------eEEEEeCCH
Confidence            48999999984 34455555543     3589999999999877433222    223221111        247778888


Q ss_pred             -cccCCCCEEEEccc----------------------------------CChHHHHHHHHHHHhhCCCCeEEEecCC
Q 004972          380 -SEFKDVDMVIEAVI----------------------------------ESVPLKQKIFSELEKACPPHCILATNTS  421 (721)
Q Consensus       380 -~~l~~aDlVIeavp----------------------------------e~~~~k~~v~~~l~~~~~~~~ii~s~ts  421 (721)
                       +++++||+||.++-                                  -+..+..++.+++.+++ |+++++.-|.
T Consensus        69 ~~Al~gADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~-P~a~lin~TN  144 (425)
T cd05197          69 EDAIIDADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLS-PDAWYLNFTN  144 (425)
T ss_pred             HHHhCCCCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhC-CCcEEEecCC
Confidence             88999999997663                                  13446667788888887 5566654333

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=97.42  E-value=0.00093  Score=65.64  Aligned_cols=133  Identities=18%  Similarity=0.196  Sum_probs=94.2

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEE--EeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEE
Q 004972           27 ALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (721)
Q Consensus        27 al~~~~~~~l~~~l~~~~~~~~v~~vVl--tg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaa  104 (721)
                      .++.+...++...|..++.++..+-+.+  .+.|      +|+..                ...++ +.+...+.||...
T Consensus        33 ~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpG------G~v~~----------------g~aIy-d~m~~~~~~V~t~   89 (196)
T PRK12551         33 PVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPG------GSVYD----------------GLGIF-DTMQHVKPDVHTV   89 (196)
T ss_pred             eecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCC------cchhh----------------HHHHH-HHHHhcCCCEEEE
Confidence            4889999999999999986543343443  3433      33221                12445 6677889999999


Q ss_pred             ECCcccccchHhhhhcCE--EEeeCCceEeCcccccCcccc--c-----------------cccccccC--HHHHHHHHH
Q 004972          105 VEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPG--T-----------------QRLPRLVG--LSKAIEMML  161 (721)
Q Consensus       105 v~G~a~GgG~~lalacD~--ria~~~a~~~~pe~~~Gl~P~--~-----------------~~l~r~~G--~~~a~~l~l  161 (721)
                      +-|.|.+.|.-|++++|-  |++.+++++.+....-|. -|  +                 ..+.+.-|  .....+++-
T Consensus        90 ~~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~-~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~  168 (196)
T PRK12551         90 CVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGA-RGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTD  168 (196)
T ss_pred             EEEEehhHHHHHHhCCCCCceecCCCCEEEEecCCccc-CCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhh
Confidence            999999999999999985  899999999887664332 22  0                 11122223  334556666


Q ss_pred             cCCCcCHHHHHHcCCccEEcCC
Q 004972          162 LSKSITSEEGWKLGLIDAVVTS  183 (721)
Q Consensus       162 tg~~~~a~eA~~~Glv~~vv~~  183 (721)
                      ....++|+||++.||||+|++.
T Consensus       169 rd~~msa~EA~eyGliD~I~~~  190 (196)
T PRK12551        169 RDFFMSPSEAVEYGLIDLVIDK  190 (196)
T ss_pred             cCcCCCHHHHHHcCCCcEEecc
Confidence            7778999999999999999965

>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional

Probab=97.38  E-value=0.0064  Score=65.31  Aligned_cols=136  Identities=17%  Similarity=0.117  Sum_probs=84.1

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEE
Q 004972           26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (721)
Q Consensus        26 Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav  105 (721)
                      .+++++-++...+.++.++... +-+|-|.=.++++ .|.+-.+.          -......+.+ ..+....+|+|++|
T Consensus       200 G~~~peGyRKAlR~mklAekf~-lPIVtLVDTpGA~-pG~~AEe~----------Gqa~aIAr~l-~ams~l~VPiISVV  266 (431)
T PLN03230        200 AMPQPNGYRKALRFMRHAEKFG-FPILTFVDTPGAY-AGIKAEEL----------GQGEAIAFNL-REMFGLRVPIIATV  266 (431)
T ss_pred             CCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCCCcC-CCHHHHHH----------hHHHHHHHHH-HHHhcCCCCEEEEE
Confidence            4678999999999888887543 3344443222232 33322221          0112222334 45778999999999


Q ss_pred             CCcccccchHhhhhcCEEEeeCCceEeC--cccccCccccccccccccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCC
Q 004972          106 EGLALGGGLELAMGCHARIAAPKTQLGL--PELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS  183 (721)
Q Consensus       106 ~G~a~GgG~~lalacD~ria~~~a~~~~--pe~~~Gl~P~~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~  183 (721)
                      -|.+.+||.....+||+++|.+++.++.  ||...     +..+....-...|.+    ...++|+++++.|+||+|+|+
T Consensus       267 iGeGgSGGAlalg~aD~VlMle~A~ysVisPEgaA-----sILwkd~~~A~eAAe----alkitA~dL~~~GiID~II~E  337 (431)
T PLN03230        267 IGEGGSGGALAIGCGNRMLMMENAVYYVASPEACA-----AILWKSAAAAPKAAE----ALRITAAELVKLGVVDEIVPE  337 (431)
T ss_pred             eCCCCcHHHHHhhcCCEEEEecCCEEEecCHHHHH-----HHHhccccchHHHHH----HcCCCHHHHHhCCCCeEeccC
Confidence            9999666655455789999999988765  22211     122222111222333    338999999999999999964

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=97.36  E-value=0.00068  Score=71.58  Aligned_cols=90  Identities=19%  Similarity=0.258  Sum_probs=62.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      +||+|||+|.+|..++..+...|.+|+++|++++..+.+..           .|. .         .+. ..++ +.+.+
T Consensus       153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~-----------~G~-~---------~~~-~~~l~~~l~~  210 (296)
T PRK08306        153 SNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITE-----------MGL-S---------PFH-LSELAEEVGK  210 (296)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------cCC-e---------eec-HHHHHHHhCC
Confidence            58999999999999999999999999999999876544311           110 0         000 1122 45688


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  422 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  422 (721)
                      +|+||.++|...     +-++....++++++|++..+.
T Consensus       211 aDiVI~t~p~~~-----i~~~~l~~~~~g~vIIDla~~  243 (296)
T PRK08306        211 IDIIFNTIPALV-----LTKEVLSKMPPEALIIDLASK  243 (296)
T ss_pred             CCEEEECCChhh-----hhHHHHHcCCCCcEEEEEccC
Confidence            999999998321     223444557788888866554

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=97.34  E-value=0.0013  Score=72.89  Aligned_cols=103  Identities=19%  Similarity=0.252  Sum_probs=67.0

Q ss_pred             eeEEEEcCCCC-cHHHHHHHHHC-----CCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc
Q 004972          306 RKVAVIGGGLM-GSGIATAHILN-----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  379 (721)
Q Consensus       306 ~kI~VIG~G~m-G~~iA~~la~~-----G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  379 (721)
                      +||+|||+|.. +..+...+++.     +-+|+++|+++++++....-.    +...+....+        -++..|+|.
T Consensus         1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~----~~~~~~~g~~--------~~v~~Ttdr   68 (437)
T cd05298           1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAV----KILFKENYPE--------IKFVYTTDP   68 (437)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHH----HHHHHhhCCC--------eEEEEECCH
Confidence            48999999985 22444555443     358999999999987743322    2333321111        257778888


Q ss_pred             -cccCCCCEEEEcccC----------------------------------ChHHHHHHHHHHHhhCCCCeEEEecCC
Q 004972          380 -SEFKDVDMVIEAVIE----------------------------------SVPLKQKIFSELEKACPPHCILATNTS  421 (721)
Q Consensus       380 -~~l~~aDlVIeavpe----------------------------------~~~~k~~v~~~l~~~~~~~~ii~s~ts  421 (721)
                       +++++||+||.++--                                  +..+..++.+++.+++ |+++++..|.
T Consensus        69 ~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~-pda~lin~tN  144 (437)
T cd05298          69 EEAFTDADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYS-PDAWILNYSN  144 (437)
T ss_pred             HHHhCCCCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHC-CCeEEEEecC
Confidence             889999999977631                                  2235667778888887 5666654443

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>PTZ00325 malate dehydrogenase; Provisional

Probab=97.34  E-value=0.00063  Score=72.29  Aligned_cols=101  Identities=16%  Similarity=0.235  Sum_probs=60.9

Q ss_pred             CCceeEEEEcC-CCCcHHHHHHHHHCC--CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccC-
Q 004972          303 RGVRKVAVIGG-GLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD-  378 (721)
Q Consensus       303 ~~~~kI~VIG~-G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-  378 (721)
                      .+|+||+|||+ |.+|+.+|..++..+  .+++++|++....+ +. .+.+        .       .. .-.+...++ 
T Consensus         6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~-a~-Dl~~--------~-------~~-~~~v~~~td~   67 (321)
T PTZ00325          6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGV-AA-DLSH--------I-------DT-PAKVTGYADG   67 (321)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCccc-cc-chhh--------c-------Cc-CceEEEecCC
Confidence            35789999999 999999999998665  48999999321110 10 0000        0       00 012333323 


Q ss_pred             ---ccccCCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972          379 ---YSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTST  422 (721)
Q Consensus       379 ---~~~l~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~  422 (721)
                         ++++++||+||.+.-.              |....+.++..+.++ .++.+++..|..
T Consensus        68 ~~~~~~l~gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~-~~~~iviv~SNP  127 (321)
T PTZ00325         68 ELWEKALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASS-APKAIVGIVSNP  127 (321)
T ss_pred             CchHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCc
Confidence               6789999999987732              222445555666666 445555544443

>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.33  E-value=0.0062  Score=63.23  Aligned_cols=194  Identities=14%  Similarity=0.086  Sum_probs=122.3

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc----c
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----S  380 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~----~  380 (721)
                      ...|+.||++.||..++.+.+.+|+.|.+|+|+..+++...++-.+        |           ..|....++    .
T Consensus         6 ~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak--------~-----------~~i~ga~S~ed~v~   66 (487)
T KOG2653|consen    6 KADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAK--------G-----------TKIIGAYSLEDFVS   66 (487)
T ss_pred             ccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhc--------C-----------CcccCCCCHHHHHH
Confidence            4579999999999999999999999999999999998876542111        1           012222333    2


Q ss_pred             ccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC-CCHHHH--hcccCCCCcEEEecCC---CCCCCCCeeE
Q 004972          381 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST-IDLNIV--GEKTSSQDRIIGAHFF---SPAHVMPLLE  454 (721)
Q Consensus       381 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~-~~i~~l--~~~~~~~~r~ig~h~~---~p~~~~~lvE  454 (721)
                      .++.--.||..|-. -.....++++|.+++.++.||++...+ ++-++-  .+.....--|+|+-.-   ..++.+|.  
T Consensus        67 klk~PR~iillvkA-G~pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPS--  143 (487)
T KOG2653|consen   67 KLKKPRVIILLVKA-GAPVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPS--  143 (487)
T ss_pred             hcCCCcEEEEEeeC-CCcHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCc--
Confidence            24555667766642 233457789999999998888864432 332221  1112233346665542   11222222  


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCCe-------eEEEcC-CCchhh----hhhh---hHHHHHHHHHHHc--CCCHHHHHH
Q 004972          455 IVRTERTSAQVILDLMTVGKIIKKV-------PVVVGN-CTGFAV----NRAF---FPYSQSARLLVSL--GVDVFRIDS  517 (721)
Q Consensus       455 iv~~~~t~~e~~~~~~~l~~~lG~~-------~v~v~d-~~gfi~----nRl~---~~~~~Ea~~l~~~--Gv~~~~ID~  517 (721)
                      ++||  .++++-..++.+++.+...       ..++++ ..|-.+    |-|=   ..++.|++.++..  |++-.+|-.
T Consensus       144 lMpG--g~~~Awp~ik~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~  221 (487)
T KOG2653|consen  144 LMPG--GSKEAWPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAE  221 (487)
T ss_pred             cCCC--CChHHHHHHHHHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHH
Confidence            4555  4888899999998876432       244554 334322    4442   3457799999987  679999988


Q ss_pred             HHHhc
Q 004972          518 AIRSF  522 (721)
Q Consensus       518 a~~~~  522 (721)
                      ++..+
T Consensus       222 vF~~W  226 (487)
T KOG2653|consen  222 VFDDW  226 (487)
T ss_pred             HHHhh
Confidence            87444

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=97.32  E-value=0.00068  Score=72.35  Aligned_cols=102  Identities=17%  Similarity=0.172  Sum_probs=64.8

Q ss_pred             eEEEEcC-CCCcHHHHHHHHHCCC-------ceEEEeCCHHH--HHHHHHHHHHHHHhhhhcCCCCHHHHH-HhhcCcee
Q 004972          307 KVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSEY--LLKGIKTIEANVRGLVTRGKLTQDKAN-NALKMLKG  375 (721)
Q Consensus       307 kI~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~i~~  375 (721)
                      ||+|||+ |.+|+.+|..++..|+       +++++|+++..  ++.-...+.               +.. .....+..
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~---------------d~~~~~~~~~~~   65 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELM---------------DCAFPLLDGVVP   65 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehh---------------cccchhcCceec
Confidence            6999999 9999999999998654       59999996543  221100000               000 01122333


Q ss_pred             c-cCccccCCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCeEEEecCCCC
Q 004972          376 V-LDYSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTSTI  423 (721)
Q Consensus       376 ~-~~~~~l~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~  423 (721)
                      + ++++++++||+||.+.--              +..+.+++..++.++.+++++++..|...
T Consensus        66 ~~~~~~~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPv  128 (324)
T TIGR01758        66 THDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPA  128 (324)
T ss_pred             cCChHHHhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH
Confidence            3 346889999999976621              23356667777888876777776555443

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.31  E-value=0.0018  Score=64.19  Aligned_cols=39  Identities=23%  Similarity=0.378  Sum_probs=35.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  344 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  344 (721)
                      ++|+|+|.|.||..+|+.|.+.|++|+++|++++.++..
T Consensus        29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~   67 (200)
T cd01075          29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARA   67 (200)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            579999999999999999999999999999998876654

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification

Probab=97.31  E-value=0.00057  Score=64.86  Aligned_cols=99  Identities=27%  Similarity=0.363  Sum_probs=65.5

Q ss_pred             HhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccc------------cCcccc--------ccccc-----
Q 004972           94 IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGVIPG--------TQRLP-----  148 (721)
Q Consensus        94 l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~------------~Gl~P~--------~~~l~-----  148 (721)
                      .....||+||.++|.|..+++-|+.+||-+++.+.+.++...+.            +|+-+.        ....+     
T Consensus         2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s   81 (154)
T PF01343_consen    2 FKASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMS   81 (154)
T ss_dssp             HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--
T ss_pred             ccccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCC
Confidence            35689999999999999999999999999999999888876544            333111        00001     


Q ss_pred             -------------------------cccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHH
Q 004972          149 -------------------------RLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLW  193 (721)
Q Consensus       149 -------------------------r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~  193 (721)
                                               |-+... ..+-+..|..+++++|++.||||++-..+++...+.+.
T Consensus        82 ~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~-~v~~~~~~~~~~~~~A~~~GLiD~i~~~~~~~~~l~~~  150 (154)
T PF01343_consen   82 EEERENLQELLDELYDQFVNDVAEGRGLSPD-DVEEIADGGVFTAQQALELGLIDEIGTFDEAIARLAKL  150 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HH-HHHCHHCCHEEEHHHHHHTTSSSEETSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCCCHH-HHHHHHhhccccHHHHHHcCchhhcCCHHHHHHHHHHH
Confidence                                     111111 12335789999999999999999999877777665543

; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=97.30  E-value=0.00078  Score=76.50  Aligned_cols=70  Identities=13%  Similarity=0.171  Sum_probs=58.5

Q ss_pred             cChHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHH-HHHHHHHHHHH
Q 004972          615 VTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGAN-YVYTSLKKWSQ  685 (721)
Q Consensus       615 ~~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~-~~~~~~~~~~~  685 (721)
                      ..++++.||++.++++||+.++++|++ |+++||.++..|+|++...-|||+..|+.|.+ .+.+.++++.+
T Consensus       182 ~~~gfi~nrl~~a~~~EA~~L~~~g~~-s~~~id~~~~~g~g~~~~~~Gpf~~~dl~g~~~g~~~~~~~~~~  252 (495)
T PRK07531        182 EIDAFVGDRLLEALWREALWLVKDGIA-TTEEIDDVIRYSFGLRWAQMGLFETYRIAGGEAGMRHFLAQFGP  252 (495)
T ss_pred             CCcchhHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHhhccCCCccccchHHHHHhcCcHHHHHHHHHHhch
Confidence            357899999999999999999999999 99999999999999876567999999999854 34444454433

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=97.29  E-value=0.00065  Score=65.82  Aligned_cols=95  Identities=21%  Similarity=0.297  Sum_probs=59.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCH---HHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceecc-----
Q 004972          307 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS---EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-----  377 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-----  377 (721)
                      ||.|||+|.+|+.++..|++.|. +++++|.+.   +.+.+-.-     ...  +-|+-..+.+...+.++....     
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~-----~~~--~vg~~Ka~~~~~~l~~lnp~v~i~~~   73 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQY-----FLS--QIGEPKVEALKENLREINPFVKIEAI   73 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccc-----cHh--hCCChHHHHHHHHHHHHCCCCEEEEE
Confidence            68999999999999999999998 599999986   43332110     000  112212222222222221111     


Q ss_pred             -------Cc-cccCCCCEEEEcccCChHHHHHHHHHHHhh
Q 004972          378 -------DY-SEFKDVDMVIEAVIESVPLKQKIFSELEKA  409 (721)
Q Consensus       378 -------~~-~~l~~aDlVIeavpe~~~~k~~v~~~l~~~  409 (721)
                             +. +.++++|+||+| .++.+.+..+.....+.
T Consensus        74 ~~~~~~~~~~~~l~~~DlVi~~-~d~~~~r~~i~~~~~~~  112 (174)
T cd01487          74 NIKIDENNLEGLFGDCDIVVEA-FDNAETKAMLAESLLGN  112 (174)
T ss_pred             EeecChhhHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHH
Confidence                   11 346889999999 56888887777776655

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed

Probab=97.28  E-value=0.012  Score=61.09  Aligned_cols=150  Identities=17%  Similarity=0.141  Sum_probs=94.0

Q ss_pred             EEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHH
Q 004972           15 VAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL   93 (721)
Q Consensus        15 v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (721)
                      |++...+-. -.-++....-+.+.++++.+.... +-+|+++..|     |+-+.+=..    . ...+.+. ...+.+.
T Consensus       135 v~v~a~Dftf~gGSmG~v~geKi~ra~e~A~~~r-lPlV~l~~SG-----GARmQEg~~----s-L~qmak~-saa~~~~  202 (296)
T CHL00174        135 VALGVMDFQFMGGSMGSVVGEKITRLIEYATNES-LPLIIVCASG-----GARMQEGSL----S-LMQMAKI-SSALYDY  202 (296)
T ss_pred             EEEEEECCcccccCcCHHHHHHHHHHHHHHHHcC-CCEEEEECCC-----Cccccccch----h-hhhhHHH-HHHHHHH
Confidence            444444433 247888999999999999887654 5566676543     333322000    0 0011111 1122121


Q ss_pred             HhhCCCcEEEEECCcccccchH-hhhhcCEEEeeCCceEeCcccccCccccccccccccCHHHHHHHHHcCCC-----cC
Q 004972           94 IEDCKKPIVAAVEGLALGGGLE-LAMGCHARIAAPKTQLGLPELTLGVIPGTQRLPRLVGLSKAIEMMLLSKS-----IT  167 (721)
Q Consensus        94 l~~~~~p~Iaav~G~a~GgG~~-lalacD~ria~~~a~~~~pe~~~Gl~P~~~~l~r~~G~~~a~~l~ltg~~-----~~  167 (721)
                      ...-..|.|+++.|+|.||+.. +++.||++|+.+++.+++..                 +.....  .+|+.     -+
T Consensus       203 ~~~~~vP~Isvl~gPt~GG~aas~a~l~Diiiae~~A~IgfAG-----------------PrVIe~--t~ge~lpe~fq~  263 (296)
T CHL00174        203 QSNKKLFYISILTSPTTGGVTASFGMLGDIIIAEPNAYIAFAG-----------------KRVIEQ--TLNKTVPEGSQA  263 (296)
T ss_pred             HHcCCCCEEEEEcCCCchHHHHHHHHcccEEEEeCCeEEEeeC-----------------HHHHHH--hcCCcCCccccc
Confidence            2246799999999999999875 47779999998888887752                 222211  23333     25


Q ss_pred             HHHHHHcCCccEEcCCchHHHHHHHHHH
Q 004972          168 SEEGWKLGLIDAVVTSEELLKVSRLWAL  195 (721)
Q Consensus       168 a~eA~~~Glv~~vv~~~~l~~~a~~~a~  195 (721)
                      |+-.++.|+||.+|+..++.+....+..
T Consensus       264 ae~l~~~G~vD~iV~r~~lr~~l~~ll~  291 (296)
T CHL00174        264 AEYLFDKGLFDLIVPRNLLKGVLSELFQ  291 (296)
T ss_pred             HHHHHhCcCceEEEcHHHHHHHHHHHHH
Confidence            7778899999999999988776666543

>PRK04148 hypothetical protein; Provisional

Probab=97.27  E-value=0.003  Score=57.78  Aligned_cols=97  Identities=18%  Similarity=0.141  Sum_probs=68.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  385 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  385 (721)
                      +||.+||+| -|..+|..|++.|++|+.+|++++.++.+.+.           + ..     ...+.+ +..+.+.-+++
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~-----------~-~~-----~v~dDl-f~p~~~~y~~a   78 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKL-----------G-LN-----AFVDDL-FNPNLEIYKNA   78 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-----------C-Ce-----EEECcC-CCCCHHHHhcC
Confidence            479999999 89999999999999999999999987766431           1 00     000000 12233556899


Q ss_pred             CEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCC
Q 004972          386 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI  423 (721)
Q Consensus       386 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~  423 (721)
                      |+|-..=|  +.-.+.-+-++++.+..+.+|..-++-.
T Consensus        79 ~liysirp--p~el~~~~~~la~~~~~~~~i~~l~~e~  114 (134)
T PRK04148         79 KLIYSIRP--PRDLQPFILELAKKINVPLIIKPLSGEE  114 (134)
T ss_pred             CEEEEeCC--CHHHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence            99998887  5545566677888888888776544433

>PRK06141 ornithine cyclodeaminase; Validated

Probab=97.24  E-value=0.00079  Score=71.80  Aligned_cols=92  Identities=17%  Similarity=0.134  Sum_probs=60.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHH--CCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc
Q 004972          306 RKVAVIGGGLMGSGIATAHIL--NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  382 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  382 (721)
                      ++|+|||+|.||..++..+..  ...+|++|+|++++.+...+.+.+       .+           ..+...++. +.+
T Consensus       126 ~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~-------~g-----------~~~~~~~~~~~av  187 (314)
T PRK06141        126 SRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRA-------QG-----------FDAEVVTDLEAAV  187 (314)
T ss_pred             ceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh-------cC-----------CceEEeCCHHHHH
Confidence            589999999999999986654  346899999999997776443221       11           013334444 567


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCC
Q 004972          383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  421 (721)
Q Consensus       383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts  421 (721)
                      ++||+||.|.+...    .++..  +.+++++.|...++
T Consensus       188 ~~aDIVi~aT~s~~----pvl~~--~~l~~g~~i~~ig~  220 (314)
T PRK06141        188 RQADIISCATLSTE----PLVRG--EWLKPGTHLDLVGN  220 (314)
T ss_pred             hcCCEEEEeeCCCC----CEecH--HHcCCCCEEEeeCC
Confidence            89999998887442    22221  35677776654443

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=97.23  E-value=0.0016  Score=71.81  Aligned_cols=122  Identities=20%  Similarity=0.275  Sum_probs=72.7

Q ss_pred             eeEEEEcCCCCcH-HHHHHHHHC-----CCceEEEeCC-HHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccC
Q 004972          306 RKVAVIGGGLMGS-GIATAHILN-----NIYVVLKEVN-SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD  378 (721)
Q Consensus       306 ~kI~VIG~G~mG~-~iA~~la~~-----G~~V~l~d~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  378 (721)
                      +||+|||+|..-+ .+...+++.     +-+|+++|++ +++++....-+++    ..+....+        -.+..|+|
T Consensus         1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~----~~~~~~~~--------~~v~~t~d   68 (419)
T cd05296           1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKR----MVKKAGLP--------IKVHLTTD   68 (419)
T ss_pred             CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHH----HHHhhCCC--------eEEEEeCC
Confidence            4899999998643 444555542     3589999999 7887664333332    22221111        24677888


Q ss_pred             c-cccCCCCEEEEcccC----------------------------------ChHHHHHHHHHHHhhCCCCeEEEecCCCC
Q 004972          379 Y-SEFKDVDMVIEAVIE----------------------------------SVPLKQKIFSELEKACPPHCILATNTSTI  423 (721)
Q Consensus       379 ~-~~l~~aDlVIeavpe----------------------------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~  423 (721)
                      . +++.+||+||.++--                                  +..+..++.+++.+++ |+++++.-|...
T Consensus        69 ~~~al~gadfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~-Pda~lin~TNP~  147 (419)
T cd05296          69 RREALEGADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELA-PDAWLINFTNPA  147 (419)
T ss_pred             HHHHhCCCCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHC-CCeEEEEecCHH
Confidence            7 789999999977631                                  1145667778888887 556665433332


Q ss_pred             CH-HHHhcccCCCCcEEEe
Q 004972          424 DL-NIVGEKTSSQDRIIGA  441 (721)
Q Consensus       424 ~i-~~l~~~~~~~~r~ig~  441 (721)
                      .+ ++...... +.|++|+
T Consensus       148 ~ivt~a~~k~~-~~rviGl  165 (419)
T cd05296         148 GIVTEAVLRHT-GDRVIGL  165 (419)
T ss_pred             HHHHHHHHHhc-cCCEEee
Confidence            22 22222222 5566663

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>PRK05654 acetyl-CoA carboxylase subunit beta; Validated

Probab=97.23  E-value=0.013  Score=61.10  Aligned_cols=156  Identities=15%  Similarity=0.198  Sum_probs=99.2

Q ss_pred             EEEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccch--HHHHHHH
Q 004972           16 AIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD--VSVELVV   91 (721)
Q Consensus        16 ~~i~l~~p~--~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~--~~~~~~~   91 (721)
                      +.|.-|++.  .-+++....+.+..+++.+... .+-+|.|.-.|     |+-+.+       . ...+..  .....+ 
T Consensus       123 V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~-~lPlV~l~dsg-----GarmqE-------g-i~sL~~~ak~~~a~-  187 (292)
T PRK05654        123 VVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEE-KCPLVIFSASG-----GARMQE-------G-LLSLMQMAKTSAAL-  187 (292)
T ss_pred             EEEEEEecccccCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCC-----Ccchhh-------h-hhHHHhHHHHHHHH-
Confidence            334445553  4889999999999999988765 45667676444     332221       1 111111  111222 


Q ss_pred             HHHhhCCCcEEEEECCcccccch-HhhhhcCEEEeeCCceEeCcccccCccccccccccccCHHHHHHHHHcCCCcCHHH
Q 004972           92 NLIEDCKKPIVAAVEGLALGGGL-ELAMGCHARIAAPKTQLGLPELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSEE  170 (721)
Q Consensus        92 ~~l~~~~~p~Iaav~G~a~GgG~-~lalacD~ria~~~a~~~~pe~~~Gl~P~~~~l~r~~G~~~a~~l~ltg~~~~a~e  170 (721)
                      ..+.....|.|+++.|.|+||+. ..++.+|+++|.+++.+++...++        +...+|.    ++  .-+.-+++-
T Consensus       188 ~~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGprv--------ie~~~~e----~l--pe~~~~ae~  253 (292)
T PRK05654        188 KRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGPRV--------IEQTVRE----KL--PEGFQRAEF  253 (292)
T ss_pred             HHHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCHHH--------HHhhhhh----hh--hhhhcCHHH
Confidence            23556789999999999999965 567789999999998888742210        0000110    00  111225777


Q ss_pred             HHHcCCccEEcCCchHHHHHHHHHHHHHhc
Q 004972          171 GWKLGLIDAVVTSEELLKVSRLWALDIAAR  200 (721)
Q Consensus       171 A~~~Glv~~vv~~~~l~~~a~~~a~~~a~~  200 (721)
                      +.+.|+||.|+++.++......+.+.+...
T Consensus       254 ~~~~G~vD~Vv~~~e~r~~l~~~L~~~~~~  283 (292)
T PRK05654        254 LLEHGAIDMIVHRRELRDTLASLLALHTKQ  283 (292)
T ss_pred             HHhCCCCcEEECHHHHHHHHHHHHHHHhcC
Confidence            789999999999999988888877765443

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=97.21  E-value=0.00026  Score=76.62  Aligned_cols=110  Identities=14%  Similarity=0.115  Sum_probs=70.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|||||.|.||+.+|..+...|++|.+||+....  .               +           .... ..++ +.+++
T Consensus       117 ktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~--~---------------~-----------~~~~-~~~L~ell~~  167 (378)
T PRK15438        117 RTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRAD--R---------------G-----------DEGD-FRSLDELVQE  167 (378)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccc--c---------------c-----------cccc-cCCHHHHHhh
Confidence            58999999999999999999999999999964321  0               0           0001 1234 45689


Q ss_pred             CCEEEEcccCChH---HHHHHH-HHHHhhCCCCeEEEecCCC--CCHHHHhcccC-CCCcEEEecCC
Q 004972          385 VDMVIEAVIESVP---LKQKIF-SELEKACPPHCILATNTST--IDLNIVGEKTS-SQDRIIGAHFF  444 (721)
Q Consensus       385 aDlVIeavpe~~~---~k~~v~-~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~-~~~r~ig~h~~  444 (721)
                      ||+|+..+|-..+   -...++ ++....++++++++..+=+  +.-..+.+.+. .+..-.++..|
T Consensus       168 sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~  234 (378)
T PRK15438        168 ADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVW  234 (378)
T ss_pred             CCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecC
Confidence            9999999995443   122333 4556678899988744333  33345555543 23334445544

>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily

Probab=97.20  E-value=0.0036  Score=63.31  Aligned_cols=95  Identities=14%  Similarity=0.232  Sum_probs=74.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEE
Q 004972           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (721)
Q Consensus        25 ~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaa  104 (721)
                      .+.++.+..+++.+++.....+..+ .++|..      .|+++..                ..++. +.+.+.+.++++.
T Consensus        69 ~~~I~i~dse~v~raI~~~~~~~~I-dLii~T------pGG~v~A----------------A~~I~-~~l~~~~~~v~v~  124 (285)
T PF01972_consen   69 YRYIDIDDSEFVLRAIREAPKDKPI-DLIIHT------PGGLVDA----------------AEQIA-RALREHPAKVTVI  124 (285)
T ss_pred             ceeEcHhhHHHHHHHHHhcCCCCce-EEEEEC------CCCcHHH----------------HHHHH-HHHHhCCCCEEEE
Confidence            4678888999999999888766554 334432      2333321                11333 5677899999999


Q ss_pred             ECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc
Q 004972          105 VEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG  143 (721)
Q Consensus       105 v~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~  143 (721)
                      |+..|+.+|.-+||+||-++|.+.+.+|--...+|-.|.
T Consensus       125 VP~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA  163 (285)
T PF01972_consen  125 VPHYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPA  163 (285)
T ss_pred             ECcccccHHHHHHHhCCeEEECCCCccCCCCccccCCCh
Confidence            999999999999999999999999999999999998885

The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.20  E-value=0.00073  Score=70.58  Aligned_cols=72  Identities=18%  Similarity=0.214  Sum_probs=54.9

Q ss_pred             eeEEEEc-CCCCcHHHHHHHHHCCCceEEEe-CCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972          306 RKVAVIG-GGLMGSGIATAHILNNIYVVLKE-VNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  383 (721)
Q Consensus       306 ~kI~VIG-~G~mG~~iA~~la~~G~~V~l~d-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  383 (721)
                      ++|+||| .|.||.+||..|.++|++|++|+ ++++. +                                     +.++
T Consensus       159 k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~l-~-------------------------------------e~~~  200 (296)
T PRK14188        159 LNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRDL-P-------------------------------------AVCR  200 (296)
T ss_pred             CEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCCH-H-------------------------------------HHHh
Confidence            5899999 99999999999999999999995 55421 0                                     2357


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972          384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  422 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  422 (721)
                      +||+||.|++....+...       ++++++++++.+..
T Consensus       201 ~ADIVIsavg~~~~v~~~-------~lk~GavVIDvGin  232 (296)
T PRK14188        201 RADILVAAVGRPEMVKGD-------WIKPGATVIDVGIN  232 (296)
T ss_pred             cCCEEEEecCChhhcchh-------eecCCCEEEEcCCc
Confidence            899999999854433222       27889998875543

>PLN02306 hydroxypyruvate reductase

Probab=97.19  E-value=0.0022  Score=70.06  Aligned_cols=117  Identities=17%  Similarity=0.156  Sum_probs=71.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHH-HCCCceEEEeCCHHH-HHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc
Q 004972          306 RKVAVIGGGLMGSGIATAHI-LNNIYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  382 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la-~~G~~V~l~d~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  382 (721)
                      ++|||||.|.+|..+|..+. .-|.+|+.||+.... .+.......   ......+...        ..+....++ +.+
T Consensus       166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~---~~l~~~~~~~--------~~~~~~~~L~ell  234 (386)
T PLN02306        166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYG---QFLKANGEQP--------VTWKRASSMEEVL  234 (386)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhc---cccccccccc--------ccccccCCHHHHH
Confidence            68999999999999999986 669999999987642 111000000   0000000000        011122355 557


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccC
Q 004972          383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS  433 (721)
Q Consensus       383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~  433 (721)
                      +.||+|+.++|-+.+...-+=.+....++++++|+..+-+  +.-..+.+.+.
T Consensus       235 ~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~  287 (386)
T PLN02306        235 READVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLK  287 (386)
T ss_pred             hhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence            9999999999977766555556677788999988743333  33345555553

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.15  E-value=0.00049  Score=63.76  Aligned_cols=75  Identities=19%  Similarity=0.202  Sum_probs=53.1

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCc-eEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  382 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~-V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  382 (721)
                      -++|.|||+|-||.+++..|+..|.. |++++|+.++++...+.+        ....+          .....++. +.+
T Consensus        12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~--------~~~~~----------~~~~~~~~~~~~   73 (135)
T PF01488_consen   12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF--------GGVNI----------EAIPLEDLEEAL   73 (135)
T ss_dssp             TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH--------TGCSE----------EEEEGGGHCHHH
T ss_pred             CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc--------Ccccc----------ceeeHHHHHHHH
Confidence            36899999999999999999999986 999999999877654321        00000          01122333 456


Q ss_pred             CCCCEEEEcccCChH
Q 004972          383 KDVDMVIEAVIESVP  397 (721)
Q Consensus       383 ~~aDlVIeavpe~~~  397 (721)
                      .++|+||.|+|-...
T Consensus        74 ~~~DivI~aT~~~~~   88 (135)
T PF01488_consen   74 QEADIVINATPSGMP   88 (135)
T ss_dssp             HTESEEEE-SSTTST
T ss_pred             hhCCeEEEecCCCCc
Confidence            899999999985443

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>TIGR03133 malonate_beta malonate decarboxylase, beta subunit

Probab=97.12  E-value=0.02  Score=59.08  Aligned_cols=149  Identities=15%  Similarity=0.211  Sum_probs=83.9

Q ss_pred             EEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcC----CCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHH
Q 004972           15 VAIITLINP-PVNALAIPIVAGLKDKFEEATSR----DDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVEL   89 (721)
Q Consensus        15 v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~----~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~   89 (721)
                      |+++-.+.. .--++....-+.+..+++.+.+|    ..+-+|.|.-.|     |+-+.+=..    . ...+.+.+ ..
T Consensus        61 v~v~a~D~t~~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSg-----GaRlqEg~~----~-L~~~a~i~-~~  129 (274)
T TIGR03133        61 VVVAAQEGRFQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTG-----GVRLQEANA----G-LIAIAEIM-RA  129 (274)
T ss_pred             EEEEEECCCccCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCC-----CcChhhhHH----H-HHHHHHHH-HH
Confidence            344444433 23677777788888888888652    223355554333     333322100    0 00011111 11


Q ss_pred             HHHHHhhCCCcEEEEECCc--ccccchHhhhhcCEEEeeCCceEeCcccccCccccccccccccCH--HHHHHHHHcCCC
Q 004972           90 VVNLIEDCKKPIVAAVEGL--ALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGTQRLPRLVGL--SKAIEMMLLSKS  165 (721)
Q Consensus        90 ~~~~l~~~~~p~Iaav~G~--a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~~~~l~r~~G~--~~a~~l~ltg~~  165 (721)
                      + ..+... .|+|+++.|.  |+||+..++..||++||++++++++.-..+        .-...|.  -...+--|.-+.
T Consensus       130 ~-~~ls~~-vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~aGP~V--------Ie~~~G~e~~~~~d~~l~~~~  199 (274)
T TIGR03133       130 I-LDARAA-VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLSGPEV--------IEQEAGVEEFDSRDRALVWRT  199 (274)
T ss_pred             H-HHHhCC-CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEeccCHHH--------HHHhcCCCccCHHHhcccccc
Confidence            2 123444 9999999999  899999999999999999998888742110        0000110  011111222334


Q ss_pred             cCHHHHHHcCCccEEcCCc
Q 004972          166 ITSEEGWKLGLIDAVVTSE  184 (721)
Q Consensus       166 ~~a~eA~~~Glv~~vv~~~  184 (721)
                      +.++.....|++|.+++++
T Consensus       200 lGG~~~~~sG~~D~~v~dd  218 (274)
T TIGR03133       200 TGGKHRFLSGDADVLVEDD  218 (274)
T ss_pred             cchHhHhhcccceEEeCCH
Confidence            5556677799999999764

Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.

>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional

Probab=97.12  E-value=0.016  Score=60.81  Aligned_cols=136  Identities=15%  Similarity=0.125  Sum_probs=85.6

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEE
Q 004972           26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (721)
Q Consensus        26 Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav  105 (721)
                      -.++++-++...+.++.++... +-+|-|-=.+++++ |.+-.+.      .    ......+.+ ..+....+|+|++|
T Consensus       133 G~~~p~g~rKa~Rlm~lA~~f~-lPIItlvDTpGA~~-G~~AE~~------G----~~~aiar~l-~~~a~~~VP~IsVV  199 (322)
T CHL00198        133 GMPSPGGYRKALRLMKHANKFG-LPILTFIDTPGAWA-GVKAEKL------G----QGEAIAVNL-REMFSFEVPIICTI  199 (322)
T ss_pred             CCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCCCcCc-CHHHHHH------h----HHHHHHHHH-HHHHcCCCCEEEEE
Confidence            5677889999999888887543 33444432233333 3221110      0    112222333 34678899999999


Q ss_pred             CCcccccchHhhhhcCEEEeeCCceEeC--cccccCccccccccccccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCC
Q 004972          106 EGLALGGGLELAMGCHARIAAPKTQLGL--PELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS  183 (721)
Q Consensus       106 ~G~a~GgG~~lalacD~ria~~~a~~~~--pe~~~Gl~P~~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~  183 (721)
                      -|.|.|||.-....||+++|.+++.|+.  ||....     ..+..   ..+|.+ +...-+++|++.+++|+||.|+|+
T Consensus       200 iGeggsGGAlal~~aD~V~m~e~a~~sVisPEg~a~-----Il~~d---~~~a~~-aA~~~~ita~dL~~~giiD~ii~E  270 (322)
T CHL00198        200 IGEGGSGGALGIGIGDSIMMLEYAVYTVATPEACAA-----ILWKD---SKKSLD-AAEALKITSEDLKVLGIIDEIIPE  270 (322)
T ss_pred             eCcccHHHHHhhhcCCeEEEeCCeEEEecCHHHHHH-----HHhcc---hhhHHH-HHHHcCCCHHHHHhCCCCeEeccC
Confidence            9999888865555699999999998875  232211     12211   233333 234567999999999999999973

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=97.11  E-value=0.011  Score=67.65  Aligned_cols=136  Identities=13%  Similarity=0.080  Sum_probs=85.2

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEE
Q 004972           26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (721)
Q Consensus        26 Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav  105 (721)
                      -+++++-++...+.++.+.... +-+|-|-=.+++++ |.+..+..          ....+.+.+ ..+....+|+|++|
T Consensus       221 G~~~peGyRKAlRlmkLAekfg-LPIVtLVDTpGA~p-G~~AEe~G----------q~~aIArnl-~amasl~VP~ISVV  287 (762)
T PLN03229        221 GMPTPHGYRKALRMMYYADHHG-FPIVTFIDTPGAYA-DLKSEELG----------QGEAIAHNL-RTMFGLKVPIVSIV  287 (762)
T ss_pred             CCCCHHHHHHHHHHHHHHHHcC-CCEEEEEECCCcCC-CchhHHHh----------HHHHHHHHH-HHHhCCCCCEEEEE
Confidence            5677888888888888887543 33444432223332 32222210          112223334 44678999999999


Q ss_pred             CCcccccchHhhhhcCEEEeeCCceEeC--cccccCccccccccccccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCC
Q 004972          106 EGLALGGGLELAMGCHARIAAPKTQLGL--PELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS  183 (721)
Q Consensus       106 ~G~a~GgG~~lalacD~ria~~~a~~~~--pe~~~Gl~P~~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~  183 (721)
                      -|.|.|||......||+++|.+++.++.  ||...     +..+..   ..+|.+ +...-.++|++.+++|+||.|+|.
T Consensus       288 iGeggSGGAlA~g~aD~VlMle~A~~sVisPEgaA-----sILwkd---~~~A~e-AAe~lkiTa~dL~~lGiiD~IIpE  358 (762)
T PLN03229        288 IGEGGSGGALAIGCANKLLMLENAVFYVASPEACA-----AILWKS---AKAAPK-AAEKLRITAQELCRLQIADGIIPE  358 (762)
T ss_pred             eCCcchHHHHHhhcCCEEEEecCCeEEecCHHHHH-----HHHhcC---cccHHH-HHHHcCCCHHHHHhCCCCeeeccC
Confidence            9999888877777799999999987664  22211     111211   122222 234567899999999999999974

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=97.08  E-value=0.0012  Score=70.31  Aligned_cols=93  Identities=20%  Similarity=0.152  Sum_probs=59.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCC-CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  383 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  383 (721)
                      ++|+|||+|.||..++..+...| .+|+++|+++++.+.....+          |.           .....++. +.+.
T Consensus       179 ~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~----------g~-----------~~~~~~~~~~~l~  237 (311)
T cd05213         179 KKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL----------GG-----------NAVPLDELLELLN  237 (311)
T ss_pred             CEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc----------CC-----------eEEeHHHHHHHHh
Confidence            58999999999999999998865 68999999998765532211          10           00011122 4467


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhC-CCCeEEEecCC
Q 004972          384 DVDMVIEAVIESVPLKQKIFSELEKAC-PPHCILATNTS  421 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~~~l~~~~-~~~~ii~s~ts  421 (721)
                      ++|+||.|++.+..  ..++.++.... ..+.++++.+.
T Consensus       238 ~aDvVi~at~~~~~--~~~~~~~~~~~~~~~~~viDlav  274 (311)
T cd05213         238 EADVVISATGAPHY--AKIVERAMKKRSGKPRLIVDLAV  274 (311)
T ss_pred             cCCEEEECCCCCch--HHHHHHHHhhCCCCCeEEEEeCC
Confidence            89999999985443  34444432222 24566665543

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=97.06  E-value=0.0021  Score=70.46  Aligned_cols=86  Identities=19%  Similarity=0.183  Sum_probs=60.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  385 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  385 (721)
                      ++|+|+|+|.+|..++..+...|.+|+++|+++.+++.+..           .|.             ......+.++++
T Consensus       203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~-----------~G~-------------~~~~~~e~v~~a  258 (413)
T cd00401         203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM-----------EGY-------------EVMTMEEAVKEG  258 (413)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh-----------cCC-------------EEccHHHHHcCC
Confidence            58999999999999999999999999999999988766531           121             111111446789


Q ss_pred             CEEEEcccCChHHHHHHHH-HHHhhCCCCeEEEecC
Q 004972          386 DMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNT  420 (721)
Q Consensus       386 DlVIeavpe~~~~k~~v~~-~l~~~~~~~~ii~s~t  420 (721)
                      |+||+|+...     .++. .....++++.+++..+
T Consensus       259 DVVI~atG~~-----~~i~~~~l~~mk~GgilvnvG  289 (413)
T cd00401         259 DIFVTTTGNK-----DIITGEHFEQMKDGAIVCNIG  289 (413)
T ss_pred             CEEEECCCCH-----HHHHHHHHhcCCCCcEEEEeC
Confidence            9999998532     2232 3355678888776433

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit

Probab=97.05  E-value=0.018  Score=59.83  Aligned_cols=149  Identities=17%  Similarity=0.216  Sum_probs=96.3

Q ss_pred             EEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHh
Q 004972           18 ITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE   95 (721)
Q Consensus        18 i~l~~p~--~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~   95 (721)
                      |.-+++.  .-+++....+.+..+++.+... .+-+|.|+..|+.     -+.|=     ......+.+. ...+ ..+.
T Consensus       124 v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~-~lPlV~l~dSgGa-----RmqEg-----~~sL~~~ak~-~~~~-~~~~  190 (285)
T TIGR00515       124 VAVFDFAFMGGSMGSVVGEKFVRAIEKALED-NCPLIIFSASGGA-----RMQEA-----LLSLMQMAKT-SAAL-AKMS  190 (285)
T ss_pred             EEEEeccccCCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCCCc-----ccccc-----hhHHHhHHHH-HHHH-HHHH
Confidence            3344443  4789999999999999888754 4566777654432     11110     0001011111 1222 3356


Q ss_pred             hCCCcEEEEECCcccccch-HhhhhcCEEEeeCCceEeCcccccCccccccccccccCHHHHHHHHHcCCC-----cCHH
Q 004972           96 DCKKPIVAAVEGLALGGGL-ELAMGCHARIAAPKTQLGLPELTLGVIPGTQRLPRLVGLSKAIEMMLLSKS-----ITSE  169 (721)
Q Consensus        96 ~~~~p~Iaav~G~a~GgG~-~lalacD~ria~~~a~~~~pe~~~Gl~P~~~~l~r~~G~~~a~~l~ltg~~-----~~a~  169 (721)
                      ....|.|+++.|+|+||+. ..++.+|+++|.+++.+++....+                 . +. .+|+.     -+|+
T Consensus       191 ~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGprV-----------------i-e~-ti~e~lpe~~q~ae  251 (285)
T TIGR00515       191 ERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPRV-----------------I-EQ-TVREKLPEGFQTSE  251 (285)
T ss_pred             cCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHHH-----------------H-HH-HhcCccchhcCCHH
Confidence            6789999999999999965 567899999999999888753221                 0 00 12232     2566


Q ss_pred             HHHHcCCccEEcCCchHHHHHHHHHHHHH
Q 004972          170 EGWKLGLIDAVVTSEELLKVSRLWALDIA  198 (721)
Q Consensus       170 eA~~~Glv~~vv~~~~l~~~a~~~a~~~a  198 (721)
                      -+.+.|+||.|+++.++.+....+.+.+.
T Consensus       252 ~~~~~G~vD~iv~~~~~r~~l~~~L~~~~  280 (285)
T TIGR00515       252 FLLEHGAIDMIVHRPEMKKTLASLLAKLQ  280 (285)
T ss_pred             HHHhCCCCcEEECcHHHHHHHHHHHHHHh
Confidence            67789999999999999887777776543

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated

Probab=97.03  E-value=0.037  Score=58.18  Aligned_cols=136  Identities=18%  Similarity=0.150  Sum_probs=86.0

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEE
Q 004972           26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (721)
Q Consensus        26 Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav  105 (721)
                      -+++++-.+...+.++.++.- .+-+|-|.=.+++++ |.+-.+      ..    ......+.+ ..+....+|+|++|
T Consensus       130 G~~~peg~rKa~R~m~lA~~f-~lPIVtlvDTpGa~~-G~~aE~------~G----~~~aia~~l-~~~a~~~VP~IsVI  196 (319)
T PRK05724        130 GMPRPEGYRKALRLMKMAEKF-GLPIITFIDTPGAYP-GIGAEE------RG----QSEAIARNL-REMARLKVPIICTV  196 (319)
T ss_pred             CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCCCC-CHHHHh------cc----HHHHHHHHH-HHHhCCCCCEEEEE
Confidence            567788888888888888754 344455543333333 332211      00    112233444 45778999999999


Q ss_pred             CCcccccchHhhhhcCEEEeeCCceEeC--cccccCccccccccccccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCC
Q 004972          106 EGLALGGGLELAMGCHARIAAPKTQLGL--PELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS  183 (721)
Q Consensus       106 ~G~a~GgG~~lalacD~ria~~~a~~~~--pe~~~Gl~P~~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~  183 (721)
                      -|.|.|||......||+++|.+++.|+.  ||....     ..+..   ..++.+..- ...+++.++.+.|+||+|+|+
T Consensus       197 iGeg~sGGAla~~~aD~v~m~~~A~~svisPEg~a~-----Il~~~---~~~a~~aae-~~~ita~~l~~~g~iD~II~E  267 (319)
T PRK05724        197 IGEGGSGGALAIGVGDRVLMLEYSTYSVISPEGCAS-----ILWKD---ASKAPEAAE-AMKITAQDLKELGIIDEIIPE  267 (319)
T ss_pred             eCCccHHHHHHHhccCeeeeecCceEeecCHHHHHH-----HHhcC---chhHHHHHH-HcCCCHHHHHHCCCceEeccC
Confidence            9999888775555699999999988764  222111     11111   123333333 556899999999999999964

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.98  E-value=0.0016  Score=67.50  Aligned_cols=72  Identities=14%  Similarity=0.214  Sum_probs=54.7

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  383 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  383 (721)
                      ++|+|||. |.||.++|..|.++|+.|++|.....                                      ++ +.++
T Consensus       159 k~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~--------------------------------------~l~~~~~  200 (284)
T PRK14179        159 KHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTR--------------------------------------NLAEVAR  200 (284)
T ss_pred             CEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCC--------------------------------------CHHHHHh
Confidence            58999999 99999999999999999999942211                                      22 3468


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972          384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  422 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  422 (721)
                      +||+||.|++....+...       ++++++++++.+..
T Consensus       201 ~ADIVI~avg~~~~v~~~-------~ik~GavVIDvgin  232 (284)
T PRK14179        201 KADILVVAIGRGHFVTKE-------FVKEGAVVIDVGMN  232 (284)
T ss_pred             hCCEEEEecCccccCCHH-------HccCCcEEEEecce
Confidence            899999999854444332       37899999875533

>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit

Probab=96.97  E-value=0.014  Score=61.20  Aligned_cols=136  Identities=16%  Similarity=0.101  Sum_probs=84.1

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEE
Q 004972           26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (721)
Q Consensus        26 Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav  105 (721)
                      -+++++-.+...+.++.++... +-+|-|.=.+++++ |.+-.+..          ......+.+ ..+....+|+|++|
T Consensus       130 G~~~p~g~rKa~R~m~lA~~f~-iPvVtlvDTpGa~~-g~~aE~~G----------~~~aia~~l-~a~s~~~VP~IsVV  196 (316)
T TIGR00513       130 GMPAPEGYRKALRLMKMAERFK-MPIITFIDTPGAYP-GIGAEERG----------QSEAIARNL-REMARLGVPVICTV  196 (316)
T ss_pred             CCCCHHHHHHHHHHHHHHHHcC-CCEEEEEECCCCCC-CHHHHHHH----------HHHHHHHHH-HHHHcCCCCEEEEE
Confidence            5677888888888888887543 34444433233332 33222110          112222334 44678899999999


Q ss_pred             CCcccccchHhhhhcCEEEeeCCceEeC--cccccCccccccccccccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCC
Q 004972          106 EGLALGGGLELAMGCHARIAAPKTQLGL--PELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS  183 (721)
Q Consensus       106 ~G~a~GgG~~lalacD~ria~~~a~~~~--pe~~~Gl~P~~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~  183 (721)
                      -|.|.|||......||++++.+++.++.  ||...-     ..+..   ..++.+..- -..++|.++.+.|+||.|+|+
T Consensus       197 iGeggsGGAla~~~aD~v~m~~~a~~sVisPEg~a~-----Il~kd---~~~a~~aae-~~~~ta~~l~~~G~iD~II~e  267 (316)
T TIGR00513       197 IGEGGSGGALAIGVGDKVNMLEYSTYSVISPEGCAA-----ILWKD---ASKAPKAAE-AMKITAPDLKELGLIDSIIPE  267 (316)
T ss_pred             ecccccHHHhhhccCCEEEEecCceEEecCHHHHHH-----Hhccc---hhhHHHHHH-HccCCHHHHHHCCCCeEeccC
Confidence            9999888775445699999999988765  222111     11211   122222222 366789999999999999963

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=96.96  E-value=0.0023  Score=68.54  Aligned_cols=93  Identities=10%  Similarity=-0.001  Sum_probs=62.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHH--CCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc
Q 004972          306 RKVAVIGGGLMGSGIATAHIL--NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  382 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  382 (721)
                      ++|+|||+|.||...+..+..  ...+|.+||+++++.+...+++++       .+           -.+...++. +.+
T Consensus       129 ~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~-------~g-----------~~v~~~~~~~eav  190 (325)
T TIGR02371       129 SVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASD-------YE-----------VPVRAATDPREAV  190 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh-------hC-----------CcEEEeCCHHHHh
Confidence            579999999999997766654  346899999999998765443321       11           013334455 678


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972          383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  422 (721)
Q Consensus       383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  422 (721)
                      ++||+||.|+|..-.    ++.  ...+++++.|....|.
T Consensus       191 ~~aDiVitaT~s~~P----~~~--~~~l~~g~~v~~vGs~  224 (325)
T TIGR02371       191 EGCDILVTTTPSRKP----VVK--ADWVSEGTHINAIGAD  224 (325)
T ss_pred             ccCCEEEEecCCCCc----Eec--HHHcCCCCEEEecCCC
Confidence            999999999985332    221  2346788877655554

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=96.96  E-value=0.011  Score=61.42  Aligned_cols=162  Identities=14%  Similarity=0.127  Sum_probs=89.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHH-CCCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcccc-
Q 004972          306 RKVAVIGGGLMGSGIATAHIL-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF-  382 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~-~G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l-  382 (721)
                      -+||+||+|.||+.|....++ .|++|+ +-|++.+.+.++.++....-...++....+.-...-..+++..|+|.+.+ 
T Consensus        18 iRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~~~i~   97 (438)
T COG4091          18 IRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDAELII   97 (438)
T ss_pred             eEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecchhhhh
Confidence            379999999999999987764 698866 66788887776654321111111121111222222233567777776443 


Q ss_pred             --CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCC-CCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCC
Q 004972          383 --KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-TIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTE  459 (721)
Q Consensus       383 --~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts-~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~  459 (721)
                        ...|+||++.--..--.+-.+..|.   ...-++.-|.- ...+.-+.......   .|+            ....+.
T Consensus        98 ~~~~IdvIIdATG~p~vGA~~~l~Ai~---h~KHlVMmNVEaDvtIGp~Lk~~Ad~---~Gv------------iyS~~~  159 (438)
T COG4091          98 ANDLIDVIIDATGVPEVGAKIALEAIL---HGKHLVMMNVEADVTIGPILKQQADA---AGV------------IYSGGA  159 (438)
T ss_pred             cCCcceEEEEcCCCcchhhHhHHHHHh---cCCeEEEEEeeeceeecHHHHHHHhh---cCe------------EEeccC
Confidence              4568899987422333333334333   33344543332 22222221111110   121            122344


Q ss_pred             CCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004972          460 RTSAQVILDLMTVGKIIKKVPVVVGN  485 (721)
Q Consensus       460 ~t~~e~~~~~~~l~~~lG~~~v~v~d  485 (721)
                      .-.|...-.+.+|.+.+|..++.++.
T Consensus       160 GDeP~~~mEL~efa~a~G~evv~aGK  185 (438)
T COG4091         160 GDEPSSCMELYEFASALGFEVVSAGK  185 (438)
T ss_pred             CCCcHHHHHHHHHHHhcCCeEEeccC
Confidence            45677788889999999999999863

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.96  E-value=0.0043  Score=62.78  Aligned_cols=92  Identities=20%  Similarity=0.239  Sum_probs=61.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCcee-ccCc-----
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDY-----  379 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~-----  379 (721)
                      ++|.|||+|.+|.++|..|.+.|++|+++|.+++.++.....   .+...                .+.. .++.     
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~---~~~~~----------------~v~gd~t~~~~L~~   61 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLAD---ELDTH----------------VVIGDATDEDVLEE   61 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhh---hcceE----------------EEEecCCCHHHHHh
Confidence            479999999999999999999999999999999997763210   00000                1111 1222     


Q ss_pred             cccCCCCEEEEcccCChHHHHHHHHHHHhh-CCCCeEEEe
Q 004972          380 SEFKDVDMVIEAVIESVPLKQKIFSELEKA-CPPHCILAT  418 (721)
Q Consensus       380 ~~l~~aDlVIeavpe~~~~k~~v~~~l~~~-~~~~~ii~s  418 (721)
                      .-+.++|.+|-++.+|..  ..++..+... .....+++-
T Consensus        62 agi~~aD~vva~t~~d~~--N~i~~~la~~~~gv~~viar   99 (225)
T COG0569          62 AGIDDADAVVAATGNDEV--NSVLALLALKEFGVPRVIAR   99 (225)
T ss_pred             cCCCcCCEEEEeeCCCHH--HHHHHHHHHHhcCCCcEEEE
Confidence            236899999998875443  3555555433 445556654

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=96.93  E-value=0.0018  Score=68.83  Aligned_cols=102  Identities=16%  Similarity=0.095  Sum_probs=72.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  385 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  385 (721)
                      +++||||.|.+|..+|+.+.--|.+|..||+++.. +..            +.            ......+-.+.++.|
T Consensus       147 ktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~~-~~~------------~~------------~~~~y~~l~ell~~s  201 (324)
T COG1052         147 KTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPNP-EAE------------KE------------LGARYVDLDELLAES  201 (324)
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCCh-HHH------------hh------------cCceeccHHHHHHhC
Confidence            68999999999999999999778999999998741 110            00            112223322668999


Q ss_pred             CEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCC-C--CCHHHHhcccC
Q 004972          386 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-T--IDLNIVGEKTS  433 (721)
Q Consensus       386 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts-~--~~i~~l~~~~~  433 (721)
                      |+|+..+|-..+...-+=++....++++++|+ |++ +  +.-..+.+.+.
T Consensus       202 Dii~l~~Plt~~T~hLin~~~l~~mk~ga~lV-NtaRG~~VDe~ALi~AL~  251 (324)
T COG1052         202 DIISLHCPLTPETRHLINAEELAKMKPGAILV-NTARGGLVDEQALIDALK  251 (324)
T ss_pred             CEEEEeCCCChHHhhhcCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence            99999999888766665577778889998886 555 3  33344555543

>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=96.92  E-value=0.0042  Score=60.40  Aligned_cols=139  Identities=22%  Similarity=0.259  Sum_probs=89.8

Q ss_pred             EEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEE--EeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHh
Q 004972           18 ITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE   95 (721)
Q Consensus        18 i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVl--tg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~   95 (721)
                      |.|..|    ++..+...+...+-.++.++..+-|.|  .+.|+...+|.                      .++ +.+.
T Consensus        30 I~l~g~----I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG~----------------------AIy-dtm~   82 (200)
T COG0740          30 IFLGGE----IEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGL----------------------AIY-DTMQ   82 (200)
T ss_pred             EEEeee----echHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcccchhH----------------------HHH-HHHH
Confidence            444444    444455566666666665544444444  44444333332                      455 6688


Q ss_pred             hCCCcEEEEECCcccccchHhhhhcCEE--EeeCCceEeCcccccCcccc--c-----------------cccccccCHH
Q 004972           96 DCKKPIVAAVEGLALGGGLELAMGCHAR--IAAPKTQLGLPELTLGVIPG--T-----------------QRLPRLVGLS  154 (721)
Q Consensus        96 ~~~~p~Iaav~G~a~GgG~~lalacD~r--ia~~~a~~~~pe~~~Gl~P~--~-----------------~~l~r~~G~~  154 (721)
                      ..+.||...+-|.|..-|.-|++++|..  ++.+++++-..... |.+-|  +                 ..+...-|..
T Consensus        83 ~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~-gg~~G~a~Di~i~A~ei~~~~~~l~~i~a~~TGq~  161 (200)
T COG0740          83 FIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPS-GGAQGQASDIEIHAREILKIKERLNRIYAEHTGQT  161 (200)
T ss_pred             hcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCC-ccCccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            8999999999999999999999999985  99999998776665 44444  1                 0111111221


Q ss_pred             --HHHHHHHcCCCcCHHHHHHcCCccEEcCCc
Q 004972          155 --KAIEMMLLSKSITSEEGWKLGLIDAVVTSE  184 (721)
Q Consensus       155 --~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~  184 (721)
                        .-...+-....++|+||+++||||+|....
T Consensus       162 ~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~  193 (200)
T COG0740         162 LEKIEKDTDRDTWMSAEEAKEYGLIDKVIESR  193 (200)
T ss_pred             HHHHHHhhcccccCCHHHHHHcCCcceecccc
Confidence              122333455668999999999999998654

>TIGR00936 ahcY adenosylhomocysteinase

Probab=96.91  E-value=0.0025  Score=69.60  Aligned_cols=96  Identities=24%  Similarity=0.227  Sum_probs=64.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  385 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  385 (721)
                      ++|+|+|.|.+|..+|+.+...|.+|+++|+++.+...+.           ..|             ....+..+.++++
T Consensus       196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~-----------~~G-------------~~v~~leeal~~a  251 (406)
T TIGR00936       196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAA-----------MDG-------------FRVMTMEEAAKIG  251 (406)
T ss_pred             CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHH-----------hcC-------------CEeCCHHHHHhcC
Confidence            5899999999999999999999999999999987644331           112             1111111456789


Q ss_pred             CEEEEcccCChHHHHHHHH-HHHhhCCCCeEEEecCCC---CCHHHHhc
Q 004972          386 DMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNTST---IDLNIVGE  430 (721)
Q Consensus       386 DlVIeavpe~~~~k~~v~~-~l~~~~~~~~ii~s~ts~---~~i~~l~~  430 (721)
                      |+||+++..     ..++. +....++++++++..+..   +....+.+
T Consensus       252 DVVItaTG~-----~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~  295 (406)
T TIGR00936       252 DIFITATGN-----KDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEE  295 (406)
T ss_pred             CEEEECCCC-----HHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHH
Confidence            999998752     23332 355667888888754432   44445544

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.91  E-value=0.0015  Score=65.49  Aligned_cols=96  Identities=22%  Similarity=0.268  Sum_probs=56.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCC---HHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCc----ee--
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN---SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKML----KG--  375 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i----~~--  375 (721)
                      .+|+|||+|.+|+.+|..|++.|. +++++|.+   .+.+.+-.  +   ...  .-|+-..+.+...+..+    ..  
T Consensus        29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~--~---~~~--dvG~~Ka~~a~~~l~~lnp~v~v~~  101 (212)
T PRK08644         29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQ--Y---FIS--QIGMPKVEALKENLLEINPFVEIEA  101 (212)
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccE--e---ehh--hCCChHHHHHHHHHHHHCCCCEEEE
Confidence            479999999999999999999998 59999988   33322110  0   000  01111111112222111    11  


Q ss_pred             -----cc-Cc-cccCCCCEEEEcccCChHHHHHHHHHHHhh
Q 004972          376 -----VL-DY-SEFKDVDMVIEAVIESVPLKQKIFSELEKA  409 (721)
Q Consensus       376 -----~~-~~-~~l~~aDlVIeavpe~~~~k~~v~~~l~~~  409 (721)
                           ++ +. +.++++|+||+|+ ++...+..+.......
T Consensus       102 ~~~~i~~~~~~~~~~~~DvVI~a~-D~~~~r~~l~~~~~~~  141 (212)
T PRK08644        102 HNEKIDEDNIEELFKDCDIVVEAF-DNAETKAMLVETVLEH  141 (212)
T ss_pred             EeeecCHHHHHHHHcCCCEEEECC-CCHHHHHHHHHHHHHh
Confidence                 00 11 3467899999995 5777777776665554

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=96.90  E-value=0.0016  Score=70.37  Aligned_cols=95  Identities=23%  Similarity=0.215  Sum_probs=62.0

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCC-CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceecc--Cc-c
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL--DY-S  380 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~--~~-~  380 (721)
                      |+||.|||+|.+|+.+|..|+++| .+|++.||+.++.+++.....         +++...       .+...+  .+ +
T Consensus         1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~---------~~v~~~-------~vD~~d~~al~~   64 (389)
T COG1748           1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG---------GKVEAL-------QVDAADVDALVA   64 (389)
T ss_pred             CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc---------ccceeE-------EecccChHHHHH
Confidence            478999999999999999999999 899999999999888643211         011100       011111  11 4


Q ss_pred             ccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecC
Q 004972          381 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  420 (721)
Q Consensus       381 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t  420 (721)
                      .+++.|+||.|+|....  ..+++.   .++.++-.++.+
T Consensus        65 li~~~d~VIn~~p~~~~--~~i~ka---~i~~gv~yvDts   99 (389)
T COG1748          65 LIKDFDLVINAAPPFVD--LTILKA---CIKTGVDYVDTS   99 (389)
T ss_pred             HHhcCCEEEEeCCchhh--HHHHHH---HHHhCCCEEEcc
Confidence            57888999999994333  344433   233455555433

>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=96.87  E-value=0.0045  Score=73.04  Aligned_cols=95  Identities=8%  Similarity=0.066  Sum_probs=76.3

Q ss_pred             EEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCC--HHHHhcccCC-CCcEEEecCCCCCC------------CCCe
Q 004972          388 VIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSS-QDRIIGAHFFSPAH------------VMPL  452 (721)
Q Consensus       388 VIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--i~~l~~~~~~-~~r~ig~h~~~p~~------------~~~l  452 (721)
                      ||.|+|  +....+++.++.++++++++|++.+|+..  +..+...+.. ..+|+|.||+....            .+..
T Consensus         1 vila~P--v~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~   78 (673)
T PRK11861          1 VLLAAP--VAQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRN   78 (673)
T ss_pred             CEEEcC--HHHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCe
Confidence            689999  99999999999999999999998777643  3444444432 35799999975553            3445


Q ss_pred             eEEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004972          453 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVG  484 (721)
Q Consensus       453 vEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~  484 (721)
                      +-+++.+.++++.++.+.++++.+|.+++.+.
T Consensus        79 ~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~  110 (673)
T PRK11861         79 VVLCALPENAPDALARVEAMWRAARADVRAMS  110 (673)
T ss_pred             EEEecCCCCCHHHHHHHHHHHHHcCCEEEECC
Confidence            66888899999999999999999999999883

>PRK05086 malate dehydrogenase; Provisional

Probab=96.87  E-value=0.0026  Score=67.65  Aligned_cols=99  Identities=18%  Similarity=0.254  Sum_probs=60.8

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHH---CCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCcee--ccC-
Q 004972          306 RKVAVIGG-GLMGSGIATAHIL---NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG--VLD-  378 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~---~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~--~~~-  378 (721)
                      +||+|||+ |.+|.+++..+..   .+++++++|+++.....+.+ +        ...        .....+..  .++ 
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alD-l--------~~~--------~~~~~i~~~~~~d~   63 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVD-L--------SHI--------PTAVKIKGFSGEDP   63 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehh-h--------hcC--------CCCceEEEeCCCCH
Confidence            58999999 9999999998855   24689999998542100000 0        000        00012332  345 


Q ss_pred             ccccCCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972          379 YSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTST  422 (721)
Q Consensus       379 ~~~l~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~  422 (721)
                      ++++++||+||.|.-.              |..+.+++...+.++. ++.+++..|..
T Consensus        64 ~~~l~~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~-~~~ivivvsNP  120 (312)
T PRK05086         64 TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTC-PKACIGIITNP  120 (312)
T ss_pred             HHHcCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCc
Confidence            4788999999998842              2235566667777774 55666544443

>PRK07189 malonate decarboxylase subunit beta; Reviewed

Probab=96.85  E-value=0.041  Score=57.43  Aligned_cols=107  Identities=18%  Similarity=0.258  Sum_probs=67.4

Q ss_pred             EEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCC----CceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHH
Q 004972           15 VAIITLINP-PVNALAIPIVAGLKDKFEEATSRD----DVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVEL   89 (721)
Q Consensus        15 v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~----~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~   89 (721)
                      |+++-.+.. .--++.......+..+++.+.++.    .+-+|.|.-.|     |+-+.+-..    . ...+.+.+ ..
T Consensus        70 v~v~a~D~tf~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSG-----GaRlqEg~~----~-L~~~a~i~-~~  138 (301)
T PRK07189         70 VVVAAQEGRFMGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETG-----GVRLQEANA----G-LAAIAEIM-RA  138 (301)
T ss_pred             EEEEEECCCccCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCC-----CcCccchHH----H-HHHHHHHH-HH
Confidence            334444433 247788888889999998887654    25566665433     233322100    0 00011111 22


Q ss_pred             HHHHHhhCCCcEEEEECCc--ccccchHhhhhcCEEEeeCCceEeCc
Q 004972           90 VVNLIEDCKKPIVAAVEGL--ALGGGLELAMGCHARIAAPKTQLGLP  134 (721)
Q Consensus        90 ~~~~l~~~~~p~Iaav~G~--a~GgG~~lalacD~ria~~~a~~~~p  134 (721)
                      + ..+... +|+|+++.|.  |+||+...+..||++||++++++++.
T Consensus       139 ~-~~ls~~-VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~igla  183 (301)
T PRK07189        139 I-VDLRAA-VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGLS  183 (301)
T ss_pred             H-HHHhCC-CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEecc
Confidence            2 124444 9999999999  99999999999999999999888874

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=96.84  E-value=0.0028  Score=69.68  Aligned_cols=86  Identities=22%  Similarity=0.206  Sum_probs=60.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|+|+|.|.+|..+|..+...|.+|+++|+++.+...+..           .|             .... ++ +.+++
T Consensus       213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~-----------~G-------------~~v~-~l~eal~~  267 (425)
T PRK05476        213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAM-----------DG-------------FRVM-TMEEAAEL  267 (425)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHh-----------cC-------------CEec-CHHHHHhC
Confidence            58999999999999999999999999999999877543311           11             1111 12 44678


Q ss_pred             CCEEEEcccCChHHHHHHHH-HHHhhCCCCeEEEecCC
Q 004972          385 VDMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNTS  421 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~-~l~~~~~~~~ii~s~ts  421 (721)
                      +|+||+|+.. .    .++. +....++++++++..+.
T Consensus       268 aDVVI~aTG~-~----~vI~~~~~~~mK~GailiNvG~  300 (425)
T PRK05476        268 GDIFVTATGN-K----DVITAEHMEAMKDGAILANIGH  300 (425)
T ss_pred             CCEEEECCCC-H----HHHHHHHHhcCCCCCEEEEcCC
Confidence            9999998742 2    2333 45566788988875443

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=96.83  E-value=0.0027  Score=67.97  Aligned_cols=102  Identities=18%  Similarity=0.174  Sum_probs=65.0

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCC-------CceEEEeCCHHH--HHHHHHHHHHHHHhhhhcCCCCHHHHH-HhhcCce
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNN-------IYVVLKEVNSEY--LLKGIKTIEANVRGLVTRGKLTQDKAN-NALKMLK  374 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G-------~~V~l~d~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~i~  374 (721)
                      .||+|+|+ |.+|+.++..|+..+       .+|+++|+++..  ++..               .++-.+.. .....+.
T Consensus         3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~---------------~~Dl~d~~~~~~~~~~   67 (325)
T cd01336           3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGV---------------VMELQDCAFPLLKSVV   67 (325)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccce---------------eeehhhccccccCCce
Confidence            47999999 999999999998855       489999996531  2110               00000000 0112344


Q ss_pred             eccCc-cccCCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972          375 GVLDY-SEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTST  422 (721)
Q Consensus       375 ~~~~~-~~l~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~  422 (721)
                      .+.++ +++++||+||.+.--              |..+.+++..++.++++++++++..|+.
T Consensus        68 ~~~~~~~~l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNP  130 (325)
T cd01336          68 ATTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNP  130 (325)
T ss_pred             ecCCHHHHhCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCc
Confidence            44554 889999999977621              2334466777788887777776655543

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=96.81  E-value=0.0092  Score=61.16  Aligned_cols=145  Identities=18%  Similarity=0.177  Sum_probs=87.6

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHH-HHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  383 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  383 (721)
                      -+||+|||.|.-|.+-|.+|..+|.+|++=-+.... .+++           .+.|             ..+.+-.++++
T Consensus        18 gK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA-----------~~dG-------------f~V~~v~ea~k   73 (338)
T COG0059          18 GKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKA-----------KEDG-------------FKVYTVEEAAK   73 (338)
T ss_pred             CCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHH-----------HhcC-------------CEeecHHHHhh
Confidence            369999999999999999999999998765554333 2222           2222             33333337789


Q ss_pred             CCCEEEEcccCChHHHHHHHH-HHHhhCCCCeEEEecCCCCCHHHHhcccCCCC--cEEEecCCCCCCC----------C
Q 004972          384 DVDMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNTSTIDLNIVGEKTSSQD--RIIGAHFFSPAHV----------M  450 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~~-~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~--r~ig~h~~~p~~~----------~  450 (721)
                      .||+|+.-+|+  +.-.++++ +|.+.++++..+. -+.++.+..-  ....|.  .++=+-|-.|-+.          .
T Consensus        74 ~ADvim~L~PD--e~q~~vy~~~I~p~Lk~G~aL~-FaHGfNihf~--~i~ppkdvdV~MVAPKgPG~~VR~~y~~G~Gv  148 (338)
T COG0059          74 RADVVMILLPD--EQQKEVYEKEIAPNLKEGAALG-FAHGFNIHFG--LIVPPKDVDVIMVAPKGPGHLVRREYKEGFGV  148 (338)
T ss_pred             cCCEEEEeCch--hhHHHHHHHHhhhhhcCCceEE-eccccceecc--eecCCccCcEEEEcCCCCcHHHHHHHHccCCc
Confidence            99999999993  44457776 8999999988664 3334443221  111121  1222222222211          1


Q ss_pred             CeeEEecCCCCCHHHHHHHHHHHHHcCCe
Q 004972          451 PLLEIVRTERTSAQVILDLMTVGKIIKKV  479 (721)
Q Consensus       451 ~lvEiv~~~~t~~e~~~~~~~l~~~lG~~  479 (721)
                      |.+-.| ....+-.+.+.+..+.+.+|.+
T Consensus       149 P~LiAV-~qD~sG~a~~~Ala~AkgiGg~  176 (338)
T COG0059         149 PALIAV-HQDASGKALDIALAYAKGIGGT  176 (338)
T ss_pred             eeEEEE-EeCCCchHHHHHHHHHHhcCCC
Confidence            111122 2233556788888888888843

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=96.81  E-value=0.016  Score=66.94  Aligned_cols=105  Identities=17%  Similarity=0.199  Sum_probs=72.9

Q ss_pred             cCcEEEEEeCC-C-----CCCCCC----------HHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccC
Q 004972           12 NDGVAIITLIN-P-----PVNALA----------IPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG   75 (721)
Q Consensus        12 ~~~v~~i~l~~-p-----~~Nal~----------~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~   75 (721)
                      ++.+.+|-++. +     +.+.+.          .-.+.++.++++.+.+|+.|++|||.-.+   +.|.++..+.    
T Consensus        41 ~~~~L~l~~~gg~i~e~~~~~~~~~~~~~~~~~~~~~l~~i~~~i~~A~~D~~IkgIvL~i~~---~~g~~~~~~~----  113 (584)
T TIGR00705        41 SSGALLLDLPVGDVTDQSPRVSLQGTLLGNPKGRAISLFDIVNAIRQAADDRRIEGLVFDLSN---FSGWDSPHLV----  113 (584)
T ss_pred             CCeEEEEECCCCcccCcCCCCchhhhhccCCCcCCcCHHHHHHHHHHHhcCCCceEEEEEccC---CCCCCHHHHH----
Confidence            56788888873 3     123221          22567999999999999999999998642   1233322211    


Q ss_pred             CCcccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCc
Q 004972           76 AGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLP  134 (721)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~p  134 (721)
                               ...+.+ ..+....|||||..++.+ -+|+-|+.+||.+++.+.+.+++.
T Consensus       114 ---------ei~~ai-~~fk~sgKpVvA~~~~~~-s~~YylAs~AD~I~~~p~G~v~~~  161 (584)
T TIGR00705       114 ---------EIGSAL-SEFKDSGKPVYAYGTNYS-QGQYYLASFADEIILNPMGSVDLH  161 (584)
T ss_pred             ---------HHHHHH-HHHHhcCCeEEEEEcccc-chhhhhhhhCCEEEECCCceEEee
Confidence                     122333 335667899999888765 678999999999999998888654

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=96.78  E-value=0.0022  Score=66.87  Aligned_cols=41  Identities=15%  Similarity=0.199  Sum_probs=36.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  346 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  346 (721)
                      ++|.|+|+|.+|.+++..++..|++|+++++++++++...+
T Consensus       118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~  158 (270)
T TIGR00507       118 QRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAE  158 (270)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            57999999999999999999999999999999988766543

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=96.77  E-value=0.0063  Score=55.17  Aligned_cols=101  Identities=21%  Similarity=0.212  Sum_probs=59.3

Q ss_pred             eEEEEcC-CCCcHHHHHHHHHC-CCceEEE-eCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceec-cCcccc
Q 004972          307 KVAVIGG-GLMGSGIATAHILN-NIYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDYSEF  382 (721)
Q Consensus       307 kI~VIG~-G~mG~~iA~~la~~-G~~V~l~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~l  382 (721)
                      ||+|+|+ |.+|..++..+... +++++.+ +++.+..+.+..          ..+.+...      ..-... .+++ .
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~----------~~~~~~~~------~~~~~~~~~~~-~   63 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSE----------AGPHLKGE------VVLELEPEDFE-E   63 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHH----------HCcccccc------cccccccCChh-h
Confidence            6899995 99999999999884 7887766 554322211110          00001000      000011 1112 2


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH
Q 004972          383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN  426 (721)
Q Consensus       383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~  426 (721)
                      .++|+||.|+|.+..  .+++..+...+.+++++++.++.+...
T Consensus        64 ~~~DvV~~~~~~~~~--~~~~~~~~~~~~~g~~viD~s~~~~~~  105 (122)
T smart00859       64 LAVDIVFLALPHGVS--KEIAPLLPKAAEAGVKVIDLSSAFRMD  105 (122)
T ss_pred             cCCCEEEEcCCcHHH--HHHHHHHHhhhcCCCEEEECCccccCC
Confidence            589999999995533  344444455568899999988886643

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]

Probab=96.73  E-value=0.011  Score=64.35  Aligned_cols=76  Identities=18%  Similarity=0.172  Sum_probs=52.2

Q ss_pred             ceeEEEEcCCCCcHHHHH--HHHH----CCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccC
Q 004972          305 VRKVAVIGGGLMGSGIAT--AHIL----NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD  378 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~--~la~----~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  378 (721)
                      ..||+|||+|..+.+--.  .+.+    .+.++.++|+++++.+..    ....+.+++.-..+        -++..++|
T Consensus         3 ~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i----~~~~~~~v~~~g~~--------~kv~~ttd   70 (442)
T COG1486           3 KFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKII----AILAKKLVEEAGAP--------VKVEATTD   70 (442)
T ss_pred             cceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHH----HHHHHHHHHhhCCC--------eEEEEecC
Confidence            358999999998876543  2222    245899999999997733    33334444432221        24777888


Q ss_pred             c-cccCCCCEEEEcc
Q 004972          379 Y-SEFKDVDMVIEAV  392 (721)
Q Consensus       379 ~-~~l~~aDlVIeav  392 (721)
                      . +++++||+||.++
T Consensus        71 ~~eAl~gAdfVi~~~   85 (442)
T COG1486          71 RREALEGADFVITQI   85 (442)
T ss_pred             HHHHhcCCCEEEEEE
Confidence            8 7899999999776

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=96.73  E-value=0.0041  Score=56.69  Aligned_cols=103  Identities=18%  Similarity=0.154  Sum_probs=60.7

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHH-CCCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cc
Q 004972          306 RKVAVIGG-GLMGSGIATAHIL-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  381 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~-~G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  381 (721)
                      +||+|+|+ |.||+.++..+.+ .|++++ .+|++++....  +.+.    .....+          ...+..++++ +.
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g--~d~g----~~~~~~----------~~~~~v~~~l~~~   64 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVG--KDVG----ELAGIG----------PLGVPVTDDLEEL   64 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTT--SBCH----HHCTSS----------T-SSBEBS-HHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCccccc--chhh----hhhCcC----------CcccccchhHHHh
Confidence            48999999 9999999999988 688854 77877621100  0000    000000          0134455666 45


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHh
Q 004972          382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG  429 (721)
Q Consensus       382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~  429 (721)
                      +..+|+||+...  ++.....++...+   .+..+++.|+++.-.++.
T Consensus        65 ~~~~DVvIDfT~--p~~~~~~~~~~~~---~g~~~ViGTTG~~~~~~~  107 (124)
T PF01113_consen   65 LEEADVVIDFTN--PDAVYDNLEYALK---HGVPLVIGTTGFSDEQID  107 (124)
T ss_dssp             TTH-SEEEEES---HHHHHHHHHHHHH---HT-EEEEE-SSSHHHHHH
T ss_pred             cccCCEEEEcCC--hHHhHHHHHHHHh---CCCCEEEECCCCCHHHHH
Confidence            677999999883  6655555555444   366777888888755443

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK12552 ATP-dependent Clp protease-like protein; Reviewed

Probab=96.72  E-value=0.016  Score=57.76  Aligned_cols=142  Identities=19%  Similarity=0.228  Sum_probs=94.0

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCce--EEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEE
Q 004972           27 ALAIPIVAGLKDKFEEATSRDDVK--AIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (721)
Q Consensus        27 al~~~~~~~l~~~l~~~~~~~~v~--~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaa  104 (721)
                      ..+.++.+.+...+-.++.++..+  -+-|.+.|+...+|-=+..             ......++ +.+...+-|+...
T Consensus        48 ~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~-------------v~~glaIy-D~m~~ik~~V~Tv  113 (222)
T PRK12552         48 QVGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGF-------------ETEAFAIC-DTMRYIKPPVHTI  113 (222)
T ss_pred             chhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccccccccc-------------cccHHHHH-HHHHhcCCCeEEE
Confidence            345558888888888887554323  2334566655555411000             01123555 6677888899999


Q ss_pred             ECCcccccchHhhhhcCE--EEeeCCceEeCcccccCcccc--------c-----------cccccccC--HHHHHHHHH
Q 004972          105 VEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPG--------T-----------QRLPRLVG--LSKAIEMML  161 (721)
Q Consensus       105 v~G~a~GgG~~lalacD~--ria~~~a~~~~pe~~~Gl~P~--------~-----------~~l~r~~G--~~~a~~l~l  161 (721)
                      +-|.|.+.+.-|++++|-  |++.+++++-+....-|. -|        .           ..+.+.-|  ...-.+++-
T Consensus       114 ~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~-~G~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I~~d~~  192 (222)
T PRK12552        114 CIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGA-RGQATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKLSKDTD  192 (222)
T ss_pred             EEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCccc-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHhc
Confidence            999999999999999995  999999999887765443 23        0           11112222  233335555


Q ss_pred             cCCCcCHHHHHHcCCccEEcCC
Q 004972          162 LSKSITSEEGWKLGLIDAVVTS  183 (721)
Q Consensus       162 tg~~~~a~eA~~~Glv~~vv~~  183 (721)
                      .-..++|+||+++||||+|+.+
T Consensus       193 rd~wmsA~EA~eyGliD~Ii~~  214 (222)
T PRK12552        193 RMFYLTPQEAKEYGLIDRVLES  214 (222)
T ss_pred             CCCcCCHHHHHHcCCCcEEecc
Confidence            5667899999999999999854

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=96.71  E-value=0.0045  Score=65.29  Aligned_cols=104  Identities=11%  Similarity=0.032  Sum_probs=71.8

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  384 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  384 (721)
                      =++|+|+|+|.+|..+|+.|...|..+.-+.+++...+...+.           +             -...+..+.+.+
T Consensus       162 gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~-----------~-------------~~~~d~~~~~~~  217 (336)
T KOG0069|consen  162 GKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEY-----------Y-------------AEFVDIEELLAN  217 (336)
T ss_pred             CCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHh-----------c-------------ccccCHHHHHhh
Confidence            4789999999999999999999995455555555443332110           0             001222366799


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH--HHhccc
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKT  432 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~--~l~~~~  432 (721)
                      +|+||.|.|-+.+...-+=+++...++++.+|+...-+-.+.  ++.+.+
T Consensus       218 sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL  267 (336)
T KOG0069|consen  218 SDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEAL  267 (336)
T ss_pred             CCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHH
Confidence            999999999888877777788889999999887554443333  444444

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=96.70  E-value=0.0024  Score=67.03  Aligned_cols=72  Identities=15%  Similarity=0.192  Sum_probs=51.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  383 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  383 (721)
                      ++|.|||+|-+|.+++..|+..|. +|+++||+.++++...+.+....      ..          ..+...++. +.++
T Consensus       128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~------~~----------~~~~~~~~~~~~~~  191 (284)
T PRK12549        128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARF------PA----------ARATAGSDLAAALA  191 (284)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhC------CC----------eEEEeccchHhhhC
Confidence            589999999999999999999998 79999999988776544332110      00          011111222 3467


Q ss_pred             CCCEEEEccc
Q 004972          384 DVDMVIEAVI  393 (721)
Q Consensus       384 ~aDlVIeavp  393 (721)
                      ++|+||.|+|
T Consensus       192 ~aDiVInaTp  201 (284)
T PRK12549        192 AADGLVHATP  201 (284)
T ss_pred             CCCEEEECCc
Confidence            8999999987

>PRK08618 ornithine cyclodeaminase; Validated

Probab=96.69  E-value=0.0057  Score=65.60  Aligned_cols=93  Identities=15%  Similarity=0.163  Sum_probs=63.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHH-CCC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc
Q 004972          306 RKVAVIGGGLMGSGIATAHIL-NNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  382 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~-~G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  382 (721)
                      ++|+|||+|.+|...+..++. .+. +|.+||+++++.++..+++...+      +           -.+...+++ +.+
T Consensus       128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~------~-----------~~~~~~~~~~~~~  190 (325)
T PRK08618        128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKF------N-----------TEIYVVNSADEAI  190 (325)
T ss_pred             cEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc------C-----------CcEEEeCCHHHHH
Confidence            579999999999998887753 454 89999999998877654432110      1           012334454 567


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972          383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  422 (721)
Q Consensus       383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  422 (721)
                      +++|+||.|.|...    .++.   ..+++++.|....|.
T Consensus       191 ~~aDiVi~aT~s~~----p~i~---~~l~~G~hV~~iGs~  223 (325)
T PRK08618        191 EEADIIVTVTNAKT----PVFS---EKLKKGVHINAVGSF  223 (325)
T ss_pred             hcCCEEEEccCCCC----cchH---HhcCCCcEEEecCCC
Confidence            89999999998442    3333   456788877665553

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=96.69  E-value=0.0033  Score=69.47  Aligned_cols=88  Identities=22%  Similarity=0.269  Sum_probs=61.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|+|||.|.+|..+|..+...|.+|+++|+++.....+.           ..|             ... .++ +.++.
T Consensus       255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~-----------~~G-------------~~~-~~leell~~  309 (476)
T PTZ00075        255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAA-----------MEG-------------YQV-VTLEDVVET  309 (476)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHH-----------hcC-------------cee-ccHHHHHhc
Confidence            5899999999999999999999999999999987643321           111             111 122 45788


Q ss_pred             CCEEEEcccCChHHHHHHH-HHHHhhCCCCeEEEecCCCCC
Q 004972          385 VDMVIEAVIESVPLKQKIF-SELEKACPPHCILATNTSTID  424 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~-~~l~~~~~~~~ii~s~ts~~~  424 (721)
                      +|+||.+.. +    +.++ .+....++++++|+. ++...
T Consensus       310 ADIVI~atG-t----~~iI~~e~~~~MKpGAiLIN-vGr~d  344 (476)
T PTZ00075        310 ADIFVTATG-N----KDIITLEHMRRMKNNAIVGN-IGHFD  344 (476)
T ss_pred             CCEEEECCC-c----ccccCHHHHhccCCCcEEEE-cCCCc
Confidence            999999864 2    2333 245556789988864 44333

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=96.67  E-value=0.0025  Score=57.83  Aligned_cols=99  Identities=18%  Similarity=0.164  Sum_probs=61.3

Q ss_pred             eEEEEc-CCCCcHHHHHHHHHCC-Cc-eEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceecc-Ccccc
Q 004972          307 KVAVIG-GGLMGSGIATAHILNN-IY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-DYSEF  382 (721)
Q Consensus       307 kI~VIG-~G~mG~~iA~~la~~G-~~-V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~l  382 (721)
                      ||+||| .|++|..+...|.++- ++ +.++.++.+.-.....    ...  ...+          ...+...+ +.+.+
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~----~~~--~~~~----------~~~~~~~~~~~~~~   64 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSE----VFP--HPKG----------FEDLSVEDADPEEL   64 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHH----TTG--GGTT----------TEEEBEEETSGHHH
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeeh----hcc--cccc----------ccceeEeecchhHh
Confidence            799999 7999999999999853 34 4556666522111100    000  0000          01223322 44667


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH
Q 004972          383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN  426 (721)
Q Consensus       383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~  426 (721)
                      .++|+||.|+|  .....++..++   ++.++.++++++.+...
T Consensus        65 ~~~Dvvf~a~~--~~~~~~~~~~~---~~~g~~ViD~s~~~R~~  103 (121)
T PF01118_consen   65 SDVDVVFLALP--HGASKELAPKL---LKAGIKVIDLSGDFRLD  103 (121)
T ss_dssp             TTESEEEE-SC--HHHHHHHHHHH---HHTTSEEEESSSTTTTS
T ss_pred             hcCCEEEecCc--hhHHHHHHHHH---hhCCcEEEeCCHHHhCC
Confidence            99999999998  66666666655   45788888988876554

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK07340 ornithine cyclodeaminase; Validated

Probab=96.64  E-value=0.0063  Score=64.57  Aligned_cols=91  Identities=18%  Similarity=0.173  Sum_probs=62.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHH-CCC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc
Q 004972          306 RKVAVIGGGLMGSGIATAHIL-NNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  382 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~-~G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  382 (721)
                      ++|+|||+|.+|...+..+.. .+. +|.+|++++++.+...+++..       .+ +          .+. .++. +.+
T Consensus       126 ~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~-------~~-~----------~~~-~~~~~~av  186 (304)
T PRK07340        126 GDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARA-------LG-P----------TAE-PLDGEAIP  186 (304)
T ss_pred             CEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHh-------cC-C----------eeE-ECCHHHHh
Confidence            589999999999999999975 454 799999999987776543321       01 0          111 2334 568


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972          383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  422 (721)
Q Consensus       383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  422 (721)
                      ++||+||.|.|....    ++..   .+++++.|....+.
T Consensus       187 ~~aDiVitaT~s~~P----l~~~---~~~~g~hi~~iGs~  219 (304)
T PRK07340        187 EAVDLVVTATTSRTP----VYPE---AARAGRLVVAVGAF  219 (304)
T ss_pred             hcCCEEEEccCCCCc----eeCc---cCCCCCEEEecCCC
Confidence            999999999985433    3322   25778777655544

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=96.62  E-value=0.0073  Score=61.61  Aligned_cols=76  Identities=14%  Similarity=0.067  Sum_probs=52.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCC---Cce-EEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccc
Q 004972          306 RKVAVIGGGLMGSGIATAHILNN---IYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  381 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G---~~V-~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  381 (721)
                      +||+|||+|.||..++..+...+   +++ .++++++++.+...                         +.....++++.
T Consensus         3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~-------------------------~~~~~~~~l~~   57 (267)
T PRK13301          3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALA-------------------------GRVALLDGLPG   57 (267)
T ss_pred             eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhh-------------------------ccCcccCCHHH
Confidence            58999999999999999987643   443 46777775544321                         11233455544


Q ss_pred             --cCCCCEEEEcccCChHHHHHHHHHHHh
Q 004972          382 --FKDVDMVIEAVIESVPLKQKIFSELEK  408 (721)
Q Consensus       382 --l~~aDlVIeavpe~~~~k~~v~~~l~~  408 (721)
                        ...+|+||||..  .+..++.-..+..
T Consensus        58 ll~~~~DlVVE~A~--~~av~e~~~~iL~   84 (267)
T PRK13301         58 LLAWRPDLVVEAAG--QQAIAEHAEGCLT   84 (267)
T ss_pred             HhhcCCCEEEECCC--HHHHHHHHHHHHh
Confidence              378999999997  7766666655543

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.62  E-value=0.0078  Score=57.79  Aligned_cols=76  Identities=22%  Similarity=0.224  Sum_probs=55.5

Q ss_pred             eeEEEEcCCCC-cHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972          306 RKVAVIGGGLM-GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~m-G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  384 (721)
                      ++|.|||+|-| |..+|..|.+.|..|++.+++.+.+.                                     +.+.+
T Consensus        45 k~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~-------------------------------------~~l~~   87 (168)
T cd01080          45 KKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLK-------------------------------------EHTKQ   87 (168)
T ss_pred             CEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHH-------------------------------------HHHhh
Confidence            68999999987 88899999999999999998753221                                     23678


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL  425 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i  425 (721)
                      ||+||-|++..--+..+       .++++.++++.+..-.+
T Consensus        88 aDiVIsat~~~~ii~~~-------~~~~~~viIDla~prdv  121 (168)
T cd01080          88 ADIVIVAVGKPGLVKGD-------MVKPGAVVIDVGINRVP  121 (168)
T ss_pred             CCEEEEcCCCCceecHH-------HccCCeEEEEccCCCcc
Confidence            99999999743222222       24567778776655443

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=96.60  E-value=0.0032  Score=69.86  Aligned_cols=38  Identities=21%  Similarity=0.260  Sum_probs=34.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCC-CceEEEeCCHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLK  343 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~  343 (721)
                      ++|+|||+|.||..++..|...| .+|++++++.++++.
T Consensus       181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~  219 (417)
T TIGR01035       181 KKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAED  219 (417)
T ss_pred             CEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence            58999999999999999999999 689999999887654

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=96.57  E-value=0.0091  Score=58.57  Aligned_cols=91  Identities=19%  Similarity=0.221  Sum_probs=62.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHC--CC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc
Q 004972          307 KVAVIGGGLMGSGIATAHILN--NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  382 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~~--G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  382 (721)
                      ||++||+|.+|..+...+...  .. -|.+||++.+++..+.+.                      .. ....+++ +.+
T Consensus         2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~----------------------~~-~~~~s~ide~~   58 (255)
T COG1712           2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEAS----------------------VG-RRCVSDIDELI   58 (255)
T ss_pred             eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhh----------------------cC-CCccccHHHHh
Confidence            799999999999999887654  23 578999999987654321                      01 1123555 445


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCC
Q 004972          383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID  424 (721)
Q Consensus       383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~  424 (721)
                      ++.|+|+||..  .+..+++..++.+. .-+.|++| ++.+.
T Consensus        59 ~~~DlvVEaAS--~~Av~e~~~~~L~~-g~d~iV~S-VGALa   96 (255)
T COG1712          59 AEVDLVVEAAS--PEAVREYVPKILKA-GIDVIVMS-VGALA   96 (255)
T ss_pred             hccceeeeeCC--HHHHHHHhHHHHhc-CCCEEEEe-chhcc
Confidence            99999999997  77667766665442 34667765 33444

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=96.54  E-value=0.0074  Score=64.75  Aligned_cols=72  Identities=14%  Similarity=0.165  Sum_probs=52.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHH-HCCC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc
Q 004972          306 RKVAVIGGGLMGSGIATAHI-LNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  382 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la-~~G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  382 (721)
                      ++++|||+|.+|...+..++ ..+. +|++|+|++++++...+++.+.+      + +          .+...++. +.+
T Consensus       130 ~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~------g-~----------~v~~~~~~~~av  192 (326)
T TIGR02992       130 SVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLL------G-I----------DVTAATDPRAAM  192 (326)
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhc------C-c----------eEEEeCCHHHHh
Confidence            57999999999999999997 3664 69999999999877654332110      1 0          12334444 567


Q ss_pred             CCCCEEEEcccC
Q 004972          383 KDVDMVIEAVIE  394 (721)
Q Consensus       383 ~~aDlVIeavpe  394 (721)
                      ++||+||.|+|.
T Consensus       193 ~~aDiVvtaT~s  204 (326)
T TIGR02992       193 SGADIIVTTTPS  204 (326)
T ss_pred             ccCCEEEEecCC
Confidence            899999999984

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=96.51  E-value=0.024  Score=59.96  Aligned_cols=124  Identities=19%  Similarity=0.203  Sum_probs=72.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHC-CCceE-EEeCCH-HHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cc
Q 004972          306 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNS-EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  381 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  381 (721)
                      .||+|||+|.||...+..+.+. +++++ ++|+++ +.+..             .-            + +..+.+. +.
T Consensus         4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~-------------~~------------~-v~~~~d~~e~   57 (324)
T TIGR01921         4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDT-------------ET------------P-VYAVADDEKH   57 (324)
T ss_pred             cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhh-------------cC------------C-ccccCCHHHh
Confidence            5899999999999999988765 78877 579985 32211             00            0 1112233 44


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCC
Q 004972          382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT  461 (721)
Q Consensus       382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t  461 (721)
                      +.++|+|+.|.|.....     ..+.+.+..+.=+++..                         +++.           .
T Consensus        58 l~~iDVViIctPs~th~-----~~~~~~L~aG~NVV~s~-------------------------~~h~-----------~   96 (324)
T TIGR01921        58 LDDVDVLILCMGSATDI-----PEQAPYFAQFANTVDSF-------------------------DNHR-----------D   96 (324)
T ss_pred             ccCCCEEEEcCCCccCH-----HHHHHHHHcCCCEEECC-------------------------Cccc-----------C
Confidence            57899999999855442     22222223322222221                         0111           1


Q ss_pred             CHHHHHHHHHHHHHcCCeeEE-EcCCCchh-hhhhhh
Q 004972          462 SAQVILDLMTVGKIIKKVPVV-VGNCTGFA-VNRAFF  496 (721)
Q Consensus       462 ~~e~~~~~~~l~~~lG~~~v~-v~d~~gfi-~nRl~~  496 (721)
                      .++..+.+....+.-|+..++ .+=.|||. +||++.
T Consensus        97 ~p~~~~~ld~AAk~~g~vsvi~~GwDPG~~si~r~~~  133 (324)
T TIGR01921        97 IPRHRQVMDAAAKAAGNVSVISTGWDPGMFSINRVYG  133 (324)
T ss_pred             CHHHHHHHHHHHHHcCCEEEEECCCCcChHHHHHHHH
Confidence            356777777777876665554 47778854 477754

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PRK10949 protease 4; Provisional

Probab=96.49  E-value=0.021  Score=66.10  Aligned_cols=84  Identities=18%  Similarity=0.173  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEECCccccc
Q 004972           33 VAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGG  112 (721)
Q Consensus        33 ~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~Gg  112 (721)
                      +.++.++++.+.+|+.|++|||.-.+.   .|..+..+             ....+.+ ..+....||+||. ...+.-+
T Consensus        97 l~div~~i~~Aa~D~rIkgivL~i~s~---gG~~~a~~-------------~eI~~ai-~~fk~sGKpVvA~-~~~~~s~  158 (618)
T PRK10949         97 LFDIVNTIRQAKDDRNITGIVLDLKNF---AGADQPSM-------------QYIGKAL-REFRDSGKPVYAV-GDSYSQG  158 (618)
T ss_pred             HHHHHHHHHHHhcCCCceEEEEEeCCC---CCccHHHH-------------HHHHHHH-HHHHHhCCeEEEE-ecCccch
Confidence            468999999999999999999986421   11111111             1122334 3466778999985 4444567


Q ss_pred             chHhhhhcCEEEeeCCceEeCc
Q 004972          113 GLELAMGCHARIAAPKTQLGLP  134 (721)
Q Consensus       113 G~~lalacD~ria~~~a~~~~p  134 (721)
                      ++-||.+||.+++.+.+.+++.
T Consensus       159 ~YyLASaAD~I~l~P~G~v~~~  180 (618)
T PRK10949        159 QYYLASFANKIYLSPQGVVDLH  180 (618)
T ss_pred             hhhhhhhCCEEEECCCceEEEe
Confidence            8999999999999998887654

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=96.43  E-value=0.0053  Score=60.62  Aligned_cols=41  Identities=27%  Similarity=0.303  Sum_probs=36.2

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHH
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  346 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  346 (721)
                      ++|.|+|+ |.+|..++..|++.|++|++++|+.++++...+
T Consensus        29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~   70 (194)
T cd01078          29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAAD   70 (194)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence            58999996 999999999999999999999999887766543

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=96.43  E-value=0.0048  Score=64.68  Aligned_cols=71  Identities=17%  Similarity=0.212  Sum_probs=51.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCC-CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  383 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  383 (721)
                      ++|.|+|+|-+|.+++..|+..| .+|++++|+.++++...+.+..       ..            .+....+. +.+.
T Consensus       124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~-------~~------------~~~~~~~~~~~~~  184 (278)
T PRK00258        124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGA-------LG------------KAELDLELQEELA  184 (278)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhh-------cc------------ceeecccchhccc
Confidence            58999999999999999999999 6899999999887765432211       00            01111122 4568


Q ss_pred             CCCEEEEcccCC
Q 004972          384 DVDMVIEAVIES  395 (721)
Q Consensus       384 ~aDlVIeavpe~  395 (721)
                      ++|+||-|+|-.
T Consensus       185 ~~DivInaTp~g  196 (278)
T PRK00258        185 DFDLIINATSAG  196 (278)
T ss_pred             cCCEEEECCcCC
Confidence            899999999843

>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]

Probab=96.41  E-value=0.034  Score=60.21  Aligned_cols=144  Identities=22%  Similarity=0.274  Sum_probs=102.1

Q ss_pred             cCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEE-eCCCCCcCCCCchhhhhccCCCcccccchHHHHHH
Q 004972           12 NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLT-GNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV   90 (721)
Q Consensus        12 ~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVlt-g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~   90 (721)
                      ++.|..+.++.    .+++...+.+.+.++.++++. ..++|+. -+++.                     +.+...++.
T Consensus        25 ~~~v~vi~i~g----~I~~~s~~~l~r~l~~A~~~~-a~~vvl~ldTPGG---------------------l~~sm~~iv   78 (436)
T COG1030          25 EKKVYVIEIDG----AIDPASADYLQRALQSAEEEN-AAAVVLELDTPGG---------------------LLDSMRQIV   78 (436)
T ss_pred             CCeEEEEEecC----ccCHHHHHHHHHHHHHHHhCC-CcEEEEEecCCCc---------------------hHHHHHHHH
Confidence            45677777765    599999999999999999765 2344442 22110                     012234566


Q ss_pred             HHHHhhCCCcEEEEE---CCcccccchHhhhhcCEEEeeCCceEeCcccc-cCcccc--c----c------cccccc--C
Q 004972           91 VNLIEDCKKPIVAAV---EGLALGGGLELAMGCHARIAAPKTQLGLPELT-LGVIPG--T----Q------RLPRLV--G  152 (721)
Q Consensus        91 ~~~l~~~~~p~Iaav---~G~a~GgG~~lalacD~ria~~~a~~~~pe~~-~Gl~P~--~----~------~l~r~~--G  152 (721)
                       +.+.+.+.|++..|   .+.|..+|..++++||+..|++.+.+|-...- .|--+.  .    .      -+.+.-  -
T Consensus        79 -~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~~gRN  157 (436)
T COG1030          79 -RAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEERGRN  157 (436)
T ss_pred             -HHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHHHHHHcCCC
Confidence             77999999988888   44699999999999999999999999875443 331111  0    0      111222  2


Q ss_pred             HHHHHHHHHcCCCcCHHHHHHcCCccEEcC
Q 004972          153 LSKAIEMMLLSKSITSEEGWKLGLIDAVVT  182 (721)
Q Consensus       153 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~  182 (721)
                      ...|.+++.....++++||++.|++|-+..
T Consensus       158 ~~~ae~~v~~~~~l~a~eA~~~~vid~iA~  187 (436)
T COG1030         158 PTWAERFVTENLSLTAEEALRQGVIDLIAR  187 (436)
T ss_pred             hHHHHHHhhhccCCChhHHHhcCccccccC
Confidence            456778999999999999999999998763

>PLN02494 adenosylhomocysteinase

Probab=96.40  E-value=0.0067  Score=66.94  Aligned_cols=87  Identities=15%  Similarity=0.243  Sum_probs=60.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|+|+|.|.+|..+|+.+...|.+|+++|+++.+...+.           ..|             .... ++ +.++.
T Consensus       255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~-----------~~G-------------~~vv-~leEal~~  309 (477)
T PLN02494        255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQAL-----------MEG-------------YQVL-TLEDVVSE  309 (477)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHH-----------hcC-------------Ceec-cHHHHHhh
Confidence            5899999999999999999999999999999987644331           111             0111 12 44678


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  421 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts  421 (721)
                      +|+||++.... .   .+..+....++++++|+..+.
T Consensus       310 ADVVI~tTGt~-~---vI~~e~L~~MK~GAiLiNvGr  342 (477)
T PLN02494        310 ADIFVTTTGNK-D---IIMVDHMRKMKNNAIVCNIGH  342 (477)
T ss_pred             CCEEEECCCCc-c---chHHHHHhcCCCCCEEEEcCC
Confidence            99999876522 1   222445556789988875444

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=96.38  E-value=0.027  Score=50.63  Aligned_cols=77  Identities=21%  Similarity=0.182  Sum_probs=52.5

Q ss_pred             eEEEEcCCCCcHHHHHHHHHC--CCce-EEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcc-cc
Q 004972          307 KVAVIGGGLMGSGIATAHILN--NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-EF  382 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~~--G~~V-~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l  382 (721)
                      ||+|||+|.+|......+.+.  +.+| .++|+++++.+...+.                       -.+...++++ .+
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~-----------------------~~~~~~~~~~~ll   58 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEK-----------------------YGIPVYTDLEELL   58 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH-----------------------TTSEEESSHHHHH
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHH-----------------------hcccchhHHHHHH
Confidence            799999999999999888876  4455 4899999887764221                       1233455653 33


Q ss_pred             C--CCCEEEEcccCChHHHHHHHHHHHh
Q 004972          383 K--DVDMVIEAVIESVPLKQKIFSELEK  408 (721)
Q Consensus       383 ~--~aDlVIeavpe~~~~k~~v~~~l~~  408 (721)
                      +  +.|+|+.|+|.  ..-.++..+..+
T Consensus        59 ~~~~~D~V~I~tp~--~~h~~~~~~~l~   84 (120)
T PF01408_consen   59 ADEDVDAVIIATPP--SSHAEIAKKALE   84 (120)
T ss_dssp             HHTTESEEEEESSG--GGHHHHHHHHHH
T ss_pred             HhhcCCEEEEecCC--cchHHHHHHHHH
Confidence            3  79999999994  333455444433

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=96.38  E-value=0.0056  Score=58.22  Aligned_cols=38  Identities=29%  Similarity=0.291  Sum_probs=35.1

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHH
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLK  343 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~  343 (721)
                      +||+|||+ |..|+-|+.-..+.||+|+.+-||++++..
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~   39 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAA   39 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccc
Confidence            58999998 999999999999999999999999998653

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=96.37  E-value=0.0068  Score=67.47  Aligned_cols=69  Identities=20%  Similarity=0.233  Sum_probs=49.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  383 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  383 (721)
                      ++|+|||+|.||..++..+...|. +|+++++++++++.....+          |.           ......+. +.+.
T Consensus       183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~----------g~-----------~~~~~~~~~~~l~  241 (423)
T PRK00045        183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEF----------GG-----------EAIPLDELPEALA  241 (423)
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHc----------CC-----------cEeeHHHHHHHhc
Confidence            589999999999999999999997 7999999998765432211          10           00001122 4567


Q ss_pred             CCCEEEEcccCC
Q 004972          384 DVDMVIEAVIES  395 (721)
Q Consensus       384 ~aDlVIeavpe~  395 (721)
                      ++|+||.|++.+
T Consensus       242 ~aDvVI~aT~s~  253 (423)
T PRK00045        242 EADIVISSTGAP  253 (423)
T ss_pred             cCCEEEECCCCC
Confidence            899999999743

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=96.31  E-value=0.032  Score=67.85  Aligned_cols=123  Identities=14%  Similarity=0.123  Sum_probs=73.2

Q ss_pred             CHHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHHhhhhcCCCCCCCCCCCCCCceeEEEEcCCCCcHHHHHHHHHC-C
Q 004972          255 GGYSGVLKEAKVFKELVMLDT-----SRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILN-N  328 (721)
Q Consensus       255 ~~~~~l~~E~~~~~~~~~s~~-----~~~~i~aF~~~r~~~~~~~~~~~~~~~~~~~kI~VIG~G~mG~~iA~~la~~-G  328 (721)
                      +-++.|......+..+....+     ..+..+-|....+.+....-.........++||+|||+|.||...|..|++. +
T Consensus       514 ~d~~~L~~i~~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rIlVLGAG~VG~~~a~~La~~~~  593 (1042)
T PLN02819        514 DDKEVLDQIIDSLTRLANPNEDYISPAREANKIFLKIGKVQQENECNEKAEVTKKSQNVLILGAGRVCRPAAEYLASVKT  593 (1042)
T ss_pred             CcHHHHHHHHHHHHHhccccccccccchhhhhhhhhhhcccccccccccccccccCCcEEEECCCHHHHHHHHHHHhCcC
Confidence            445666666666666664222     2445555554444332221111122344578999999999999999999875 3


Q ss_pred             Cc-------------eEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCcee-ccCc----cccCCCCEEEE
Q 004972          329 IY-------------VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDY----SEFKDVDMVIE  390 (721)
Q Consensus       329 ~~-------------V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~----~~l~~aDlVIe  390 (721)
                      ++             |++.|++++.++.+.+.+        . + .         ..+.. .+|.    +.++++|+||.
T Consensus       594 ~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~--------~-~-~---------~~v~lDv~D~e~L~~~v~~~DaVIs  654 (1042)
T PLN02819        594 ISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI--------E-N-A---------EAVQLDVSDSESLLKYVSQVDVVIS  654 (1042)
T ss_pred             ccccccccccccccEEEEECCCHHHHHHHHHhc--------C-C-C---------ceEEeecCCHHHHHHhhcCCCEEEE
Confidence            34             999999998876643211        0 0 0         01122 2232    23478999999


Q ss_pred             cccCCh
Q 004972          391 AVIESV  396 (721)
Q Consensus       391 avpe~~  396 (721)
                      |+|...
T Consensus       655 alP~~~  660 (1042)
T PLN02819        655 LLPASC  660 (1042)
T ss_pred             CCCchh
Confidence            999543

>PRK08291 ectoine utilization protein EutC; Validated

Probab=96.31  E-value=0.013  Score=63.08  Aligned_cols=72  Identities=17%  Similarity=0.139  Sum_probs=52.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHH-CC-CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc
Q 004972          306 RKVAVIGGGLMGSGIATAHIL-NN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  382 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~-~G-~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  382 (721)
                      ++|+|||+|.+|...+..+.. .+ .+|++|++++++++...+.+.+.+      + +          .+...++. +.+
T Consensus       133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~------g-~----------~v~~~~d~~~al  195 (330)
T PRK08291        133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAEL------G-I----------PVTVARDVHEAV  195 (330)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhcc------C-c----------eEEEeCCHHHHH
Confidence            589999999999999888875 44 489999999999887654332110      1 0          12334554 567


Q ss_pred             CCCCEEEEcccC
Q 004972          383 KDVDMVIEAVIE  394 (721)
Q Consensus       383 ~~aDlVIeavpe  394 (721)
                      ++||+||.|.|.
T Consensus       196 ~~aDiVi~aT~s  207 (330)
T PRK08291        196 AGADIIVTTTPS  207 (330)
T ss_pred             ccCCEEEEeeCC
Confidence            889999999874

>TIGR00518 alaDH alanine dehydrogenase

Probab=96.25  E-value=0.0071  Score=65.99  Aligned_cols=40  Identities=25%  Similarity=0.334  Sum_probs=36.0

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  344 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  344 (721)
                      -.+|.|||+|.+|...+..+...|.+|+++|+++++++.+
T Consensus       167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l  206 (370)
T TIGR00518       167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQL  206 (370)
T ss_pred             CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHH
Confidence            3579999999999999999999999999999999876654

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit

Probab=96.23  E-value=0.076  Score=53.82  Aligned_cols=139  Identities=15%  Similarity=0.182  Sum_probs=79.6

Q ss_pred             CCCHHHHHHHHHHHHHH-hcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHH---HhhCCCcEE
Q 004972           27 ALAIPIVAGLKDKFEEA-TSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL---IEDCKKPIV  102 (721)
Q Consensus        27 al~~~~~~~l~~~l~~~-~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~p~I  102 (721)
                      .++.+-...+...+..+ +++..+-+|.|.=.+ .|-.|..-++..          +......++ +.   ..+.+.|+|
T Consensus        44 ~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtp-G~~~g~~aE~~G----------~~~a~A~l~-~a~a~a~~~~vP~I  111 (238)
T TIGR03134        44 EVGLDEALALAQAVLDVIEADDKRPIVVLVDTP-SQAYGRREELLG----------INQALAHLA-KALALARLAGHPVI  111 (238)
T ss_pred             cCChHHHHHHHHHHHHHHHhcCCCCEEEEEeCC-CCCCCHHHHHHH----------HHHHHHHHH-HHHHHhhcCCCCEE
Confidence            57777777777777775 444555555554322 233333222110          111122222 22   445669999


Q ss_pred             EEECCcccccch-HhhhhcCEEEeeCCceEeCcccccCcccc--ccccccccCHHHHHHHHHcC--CCcCHHHHHHcCCc
Q 004972          103 AAVEGLALGGGL-ELAMGCHARIAAPKTQLGLPELTLGVIPG--TQRLPRLVGLSKAIEMMLLS--KSITSEEGWKLGLI  177 (721)
Q Consensus       103 aav~G~a~GgG~-~lalacD~ria~~~a~~~~pe~~~Gl~P~--~~~l~r~~G~~~a~~l~ltg--~~~~a~eA~~~Glv  177 (721)
                      +.|-|.++|||+ .+.+.+|.++|.+++.++       .+|.  ..+...+ ....+.++.-+-  ...+.+.+.++|+|
T Consensus       112 svI~g~a~ggg~lamg~~ad~v~Alp~A~i~-------vm~~e~aa~I~~~-~~~~~~e~a~~~~~~a~~~~~~~~~G~v  183 (238)
T TIGR03134       112 GLIYGKAISGAFLAHGLQADRIIALPGAMVH-------VMDLESMARVTKR-SVEELEALAKSSPVFAPGIENFVKLGGV  183 (238)
T ss_pred             EEEeCCccHHHHHHHccCcCeEEEcCCcEEE-------ecCHHHHHHHHcc-CHhHHHHHHHhhhhhccCHHHHHhCCCc
Confidence            999999998876 555568888887776654       3443  1111111 113344443322  24577789999999


Q ss_pred             cEEcCCch
Q 004972          178 DAVVTSEE  185 (721)
Q Consensus       178 ~~vv~~~~  185 (721)
                      |.|+++.+
T Consensus       184 d~vi~~~~  191 (238)
T TIGR03134       184 HALLDVAD  191 (238)
T ss_pred             cEEeCCCC
Confidence            99997655

Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=96.23  E-value=0.099  Score=59.33  Aligned_cols=139  Identities=21%  Similarity=0.166  Sum_probs=90.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCC--CchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEE
Q 004972           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF--DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIV  102 (721)
Q Consensus        25 ~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~--Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~I  102 (721)
                      ..+++......+..+++.+.++. +-+|.|.-     |.|+  ++.+-....     ..+...+ ..+ ..+.. ..|+|
T Consensus        70 gGs~g~~~~~Ki~ra~~~A~~~~-~P~v~l~d-----sgGa~~r~~eg~~~l-----~~~g~i~-~~~-~~~~~-~iP~I  135 (493)
T PF01039_consen   70 GGSVGEVHGEKIARAIELALENG-LPLVYLVD-----SGGAFLRMQEGVESL-----MGMGRIF-RAI-ARLSG-GIPQI  135 (493)
T ss_dssp             GGTBSHHHHHHHHHHHHHHHHHT-EEEEEEEE-----ESSBCGGGGGHHHHH-----HHHHHHH-HHH-HHHHT-TS-EE
T ss_pred             cCCCCcccceeeehHHHHHHHcC-CCcEEecc-----ccccccccchhhhhh-----hhhHHHH-HHH-HHHhc-CCCeE
Confidence            47899999999999999888664 44555543     3344  444322110     0111111 222 23555 99999


Q ss_pred             EEECCcccccchHhhhhcCEEEeeCC-ceEeCcccccCccccccccccccCHHHHHHHHHcCCCcCHHHH-------HHc
Q 004972          103 AAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSEEG-------WKL  174 (721)
Q Consensus       103 aav~G~a~GgG~~lalacD~ria~~~-a~~~~pe~~~Gl~P~~~~l~r~~G~~~a~~l~ltg~~~~a~eA-------~~~  174 (721)
                      +++.|.|+|||..++..||++|+.++ +.+++.                 |+... + ..+|+.++.++.       ...
T Consensus       136 ~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~-----------------GP~vv-~-~~~Ge~~~~~~lgG~~~h~~~s  196 (493)
T PF01039_consen  136 SVVTGPCTGGGAYLAALSDFVIMVKGTARIFLA-----------------GPRVV-E-SATGEEVDSEELGGADVHAAKS  196 (493)
T ss_dssp             EEEESEEEGGGGHHHHHSSEEEEETTTCEEESS-----------------THHHH-H-HHHSSCTSHHHHHBHHHHHHTS
T ss_pred             EEEccccccchhhcccccCccccCccceEEEec-----------------ccccc-c-cccCccccchhhhhhhhhcccC
Confidence            99999999999999999999999987 888765                 32322 2 245788888763       467


Q ss_pred             CCccEEcCCchHHHHHHHHHHHHHh
Q 004972          175 GLIDAVVTSEELLKVSRLWALDIAA  199 (721)
Q Consensus       175 Glv~~vv~~~~l~~~a~~~a~~~a~  199 (721)
                      |.+|.++++++   .+.+.++++.+
T Consensus       197 G~~d~v~~de~---~a~~~ir~~ls  218 (493)
T PF01039_consen  197 GVVDYVVDDEE---DALAQIRRLLS  218 (493)
T ss_dssp             SSSSEEESSHH---HHHHHHHHHHH
T ss_pred             CCceEEEechH---HHHHHHHHhhc
Confidence            99999997653   34444444443

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional

Probab=96.19  E-value=0.14  Score=51.83  Aligned_cols=113  Identities=17%  Similarity=0.158  Sum_probs=77.1

Q ss_pred             ceec-cCccccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccC----CCCcEEEecCCCCC
Q 004972          373 LKGV-LDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTS----SQDRIIGAHFFSPA  447 (721)
Q Consensus       373 i~~~-~~~~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~----~~~r~ig~h~~~p~  447 (721)
                      ++.+ +|.++++++|++|.-.|..- ....+++++.+++++++|| +||.+++...+...+.    ..-.+..+||-.=|
T Consensus       129 vkVtsDD~EAvk~aei~I~ftPfG~-~t~~Iikki~~~ipEgAII-~~tCTIpt~~ly~~le~l~R~DvgIsS~HPaaVP  206 (342)
T PRK00961        129 LKVTTDDREAVADADIVITWLPKGG-MQPDIIEKFADDIKEGAIV-THACTIPTTKFAKIFKDLGRDDLNVTSYHPGAVP  206 (342)
T ss_pred             ceEecCcHHHhcCCCEEEEecCCCC-CchHHHHHHHhhCCCCCEE-eccccCCHHHHHHHHHHhCcccCCeeccCCCCCC
Confidence            4444 45589999999999998433 1247788889999999987 5788888765554433    22346667764322


Q ss_pred             CCCCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEE-cCCCc
Q 004972          448 HVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV-GNCTG  488 (721)
Q Consensus       448 ~~~~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v-~d~~g  488 (721)
                      . ++.--.+.-...++|+++++.++.+..|+.+.++ .+..+
T Consensus       207 g-t~Gq~~i~egyAtEEqI~klveL~~sa~k~ay~~PA~lvs  247 (342)
T PRK00961        207 E-MKGQVYIAEGYADEEAVEKLYEIGKKARGNAFKMPANLIG  247 (342)
T ss_pred             C-CCCceecccccCCHHHHHHHHHHHHHhCCCeeecchhhcc
Confidence            1 1221123344568999999999999999999988 34333

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=96.14  E-value=0.018  Score=60.95  Aligned_cols=94  Identities=14%  Similarity=0.126  Sum_probs=63.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHC-CC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc
Q 004972          306 RKVAVIGGGLMGSGIATAHILN-NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  382 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~-G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  382 (721)
                      ++++|||+|..|...+..++.- .+ +|.+|++++++.++..+++.+.+      +           -.+...++. +++
T Consensus       118 ~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~------~-----------~~v~~~~~~~eav  180 (301)
T PRK06407        118 ENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEF------G-----------VDIRPVDNAEAAL  180 (301)
T ss_pred             cEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhc------C-----------CcEEEeCCHHHHH
Confidence            5899999999999998887753 33 79999999999887654433210      1           124444555 678


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972          383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  422 (721)
Q Consensus       383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  422 (721)
                      ++||+|+.|.+..-    .++.  ...+++++-|....|.
T Consensus       181 ~~aDIV~taT~s~~----P~~~--~~~l~pg~hV~aiGs~  214 (301)
T PRK06407        181 RDADTITSITNSDT----PIFN--RKYLGDEYHVNLAGSN  214 (301)
T ss_pred             hcCCEEEEecCCCC----cEec--HHHcCCCceEEecCCC
Confidence            99999999987433    2221  1245677766554443

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=96.11  E-value=0.011  Score=61.07  Aligned_cols=93  Identities=18%  Similarity=0.093  Sum_probs=55.3

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHC-CCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cc
Q 004972          306 RKVAVIGG-GLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  381 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  381 (721)
                      .||+|+|+ |.||..++..+.+. +++++ ++|++++.....            ..            ..+...+++ +.
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~------------~~------------~~i~~~~dl~~l   57 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ------------GA------------LGVAITDDLEAV   57 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc------------CC------------CCccccCCHHHh
Confidence            58999998 99999999988764 67765 588887653221            00            012234555 33


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHH
Q 004972          382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI  427 (721)
Q Consensus       382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~  427 (721)
                      ++++|+||++.|  +....++.....   ..+.-++..|+++...+
T Consensus        58 l~~~DvVid~t~--p~~~~~~~~~al---~~G~~vvigttG~s~~~   98 (257)
T PRK00048         58 LADADVLIDFTT--PEATLENLEFAL---EHGKPLVIGTTGFTEEQ   98 (257)
T ss_pred             ccCCCEEEECCC--HHHHHHHHHHHH---HcCCCEEEECCCCCHHH
Confidence            567999998887  443334433332   23333333355555443

>PRK06046 alanine dehydrogenase; Validated

Probab=96.09  E-value=0.019  Score=61.62  Aligned_cols=93  Identities=12%  Similarity=0.072  Sum_probs=60.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHC-CC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc
Q 004972          306 RKVAVIGGGLMGSGIATAHILN-NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  382 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~-G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  382 (721)
                      ++|+|||+|.+|...+..+... +. .|.+||+++++.++..+++.+.+      +           -.+...++. +.+
T Consensus       130 ~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~------~-----------~~v~~~~~~~~~l  192 (326)
T PRK06046        130 KVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVV------G-----------CDVTVAEDIEEAC  192 (326)
T ss_pred             CEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhc------C-----------ceEEEeCCHHHHh
Confidence            5899999999999999988743 43 78899999998877654432110      1           013334455 345


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972          383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  422 (721)
Q Consensus       383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  422 (721)
                      + +|+|+.|.|...    .++.  .+.+++++.|.+..|.
T Consensus       193 ~-aDiVv~aTps~~----P~~~--~~~l~~g~hV~~iGs~  225 (326)
T PRK06046        193 D-CDILVTTTPSRK----PVVK--AEWIKEGTHINAIGAD  225 (326)
T ss_pred             h-CCEEEEecCCCC----cEec--HHHcCCCCEEEecCCC
Confidence            5 999999998533    2221  1345677776655543

>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase

Probab=96.05  E-value=0.23  Score=50.38  Aligned_cols=108  Identities=17%  Similarity=0.156  Sum_probs=74.8

Q ss_pred             ceec-cCccccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcc---cCC-CCcEEEecCCCCC
Q 004972          373 LKGV-LDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEK---TSS-QDRIIGAHFFSPA  447 (721)
Q Consensus       373 i~~~-~~~~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~---~~~-~~r~ig~h~~~p~  447 (721)
                      ++.+ +|.++++++|++|.-.|..- ....+++++.+++++++|| +||.+++...+...   +.+ .-.+..+||-.=|
T Consensus       127 vkVtsDD~EAv~~aei~I~ftPfG~-~q~~Iikkii~~lpEgAII-~~tCTIpt~~ly~ilE~l~R~DvgVsS~HPaaVP  204 (340)
T TIGR01723       127 LKVTTDDREAVEDADIIITWLPKGN-KQPDIIKKFIDDIPEGAIV-THACTIPTTKFAKIFEDLGREDLNVTSYHPGCVP  204 (340)
T ss_pred             ceEecCcHHHhcCCCEEEEEcCCCC-CchHHHHHHHhhCCCCCEE-eccccCChHHHHHHHHhhCcccCCeeccCCCCCC
Confidence            4444 45589999999999998433 1247788889999999987 57878777644333   332 2356667775433


Q ss_pred             CCCCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEE
Q 004972          448 HVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV  483 (721)
Q Consensus       448 ~~~~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v  483 (721)
                      ..-..+=++ ....++|+++++.++.+..|+.+..+
T Consensus       205 gt~~q~Yi~-egyAtEEqI~klveL~~sa~k~ay~~  239 (340)
T TIGR01723       205 EMKGQVYIA-EGYASEEAVNKLYELGKKARGKAFKM  239 (340)
T ss_pred             CCCCceEee-cccCCHHHHHHHHHHHHHhCCCeeec
Confidence            221222233 34568999999999999999999987

This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.

>PLN00203 glutamyl-tRNA reductase

Probab=96.03  E-value=0.0077  Score=68.19  Aligned_cols=83  Identities=16%  Similarity=0.182  Sum_probs=55.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  383 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  383 (721)
                      ++|+|||+|.||..++..|...|. +|++++++.++++...+.+        . + ..        -.....++. +.+.
T Consensus       267 kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~--------~-g-~~--------i~~~~~~dl~~al~  328 (519)
T PLN00203        267 ARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEF--------P-D-VE--------IIYKPLDEMLACAA  328 (519)
T ss_pred             CEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh--------C-C-Cc--------eEeecHhhHHHHHh
Confidence            589999999999999999999997 7999999998876643211        0 1 00        001111222 5578


Q ss_pred             CCCEEEEcccCC-hHHHHHHHHHH
Q 004972          384 DVDMVIEAVIES-VPLKQKIFSEL  406 (721)
Q Consensus       384 ~aDlVIeavpe~-~~~k~~v~~~l  406 (721)
                      ++|+||.|++.. +.+..+.++++
T Consensus       329 ~aDVVIsAT~s~~pvI~~e~l~~~  352 (519)
T PLN00203        329 EADVVFTSTSSETPLFLKEHVEAL  352 (519)
T ss_pred             cCCEEEEccCCCCCeeCHHHHHHh
Confidence            899999997532 23444555544

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=96.02  E-value=0.012  Score=66.43  Aligned_cols=70  Identities=17%  Similarity=0.207  Sum_probs=50.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  385 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  385 (721)
                      ++++|+|+|.+|.+++..++..|++|+++|+++++++...+.+        .....+             ..+...+.++
T Consensus       333 k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~--------~~~~~~-------------~~~~~~l~~~  391 (477)
T PRK09310        333 QHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRC--------QGKAFP-------------LESLPELHRI  391 (477)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--------ccceec-------------hhHhcccCCC
Confidence            5799999999999999999999999999999988766543211        000010             1122336789


Q ss_pred             CEEEEcccCCh
Q 004972          386 DMVIEAVIESV  396 (721)
Q Consensus       386 DlVIeavpe~~  396 (721)
                      |+||.|+|...
T Consensus       392 DiVInatP~g~  402 (477)
T PRK09310        392 DIIINCLPPSV  402 (477)
T ss_pred             CEEEEcCCCCC
Confidence            99999999554

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.99  E-value=0.016  Score=60.20  Aligned_cols=73  Identities=19%  Similarity=0.292  Sum_probs=54.7

Q ss_pred             eeEEEEcCCC-CcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972          306 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  384 (721)
                      ++|.|||.|. +|.++|..|.+.|..|+++++....+.                                     +.+++
T Consensus       159 k~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~-------------------------------------~~~~~  201 (286)
T PRK14175        159 KNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMA-------------------------------------SYLKD  201 (286)
T ss_pred             CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------HHHhh
Confidence            5899999987 999999999999999999987532211                                     23678


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  422 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  422 (721)
                      ||+||-|++-.-     ++..  ..+++++++++..+.
T Consensus       202 ADIVIsAvg~p~-----~i~~--~~vk~gavVIDvGi~  232 (286)
T PRK14175        202 ADVIVSAVGKPG-----LVTK--DVVKEGAVIIDVGNT  232 (286)
T ss_pred             CCEEEECCCCCc-----ccCH--HHcCCCcEEEEcCCC
Confidence            999999997322     2222  346888988876654

>PRK06823 ornithine cyclodeaminase; Validated

Probab=95.98  E-value=0.029  Score=59.72  Aligned_cols=94  Identities=10%  Similarity=0.059  Sum_probs=64.0

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHC--CCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cc
Q 004972          305 VRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  381 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  381 (721)
                      .++++|||+|..+...+..+...  --+|.+|++++++.++..+.+++       .+           -.+...++. ++
T Consensus       128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~-------~~-----------~~v~~~~~~~~a  189 (315)
T PRK06823        128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQA-------LG-----------FAVNTTLDAAEV  189 (315)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh-------cC-----------CcEEEECCHHHH
Confidence            35899999999999999887653  23899999999998876543221       11           123444555 67


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972          382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  422 (721)
Q Consensus       382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  422 (721)
                      +++||+|+.|.+...    .++.  .+.+++++.|....|.
T Consensus       190 v~~ADIV~taT~s~~----P~~~--~~~l~~G~hi~~iGs~  224 (315)
T PRK06823        190 AHAANLIVTTTPSRE----PLLQ--AEDIQPGTHITAVGAD  224 (315)
T ss_pred             hcCCCEEEEecCCCC----ceeC--HHHcCCCcEEEecCCC
Confidence            899999999987433    3332  1346788877655554

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=95.95  E-value=0.089  Score=52.26  Aligned_cols=126  Identities=20%  Similarity=0.262  Sum_probs=74.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHH-HHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceecc---Cccc
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL---DYSE  381 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~---~~~~  381 (721)
                      ++|.|||+|.+|...+..|.+.|.+|++++++.. .+..           +...+.            +....   ..+.
T Consensus        11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~-----------l~~~~~------------i~~~~~~~~~~~   67 (202)
T PRK06718         11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVK-----------LVEEGK------------IRWKQKEFEPSD   67 (202)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHH-----------HHhCCC------------EEEEecCCChhh
Confidence            6899999999999999999999999999987532 1111           112221            22211   1255


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCC--CCCCeeEEecCC
Q 004972          382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA--HVMPLLEIVRTE  459 (721)
Q Consensus       382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~--~~~~lvEiv~~~  459 (721)
                      +.++|+||-|+. +.++...+...    +..+. ++.+....+            .   ..|..|.  ..+++.--|.+.
T Consensus        68 l~~adlViaaT~-d~elN~~i~~~----a~~~~-lvn~~d~~~------------~---~~f~~Pa~~~~g~l~iaIsT~  126 (202)
T PRK06718         68 IVDAFLVIAATN-DPRVNEQVKED----LPENA-LFNVITDAE------------S---GNVVFPSALHRGKLTISVSTD  126 (202)
T ss_pred             cCCceEEEEcCC-CHHHHHHHHHH----HHhCC-cEEECCCCc------------c---CeEEEeeEEEcCCeEEEEECC
Confidence            789999998765 55555554333    33333 333222211            1   1233333  334454455666


Q ss_pred             CCCHHHHHHHHHHHHH
Q 004972          460 RTSAQVILDLMTVGKI  475 (721)
Q Consensus       460 ~t~~e~~~~~~~l~~~  475 (721)
                      +.+|.....++.-++.
T Consensus       127 G~sP~la~~lr~~ie~  142 (202)
T PRK06718        127 GASPKLAKKIRDELEA  142 (202)
T ss_pred             CCChHHHHHHHHHHHH
Confidence            6788777777766665

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=95.95  E-value=0.016  Score=60.83  Aligned_cols=41  Identities=17%  Similarity=0.122  Sum_probs=36.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK  346 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~  346 (721)
                      +++.|||+|-+|.+++..|+..|. +|++++|++++.+...+
T Consensus       126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~  167 (282)
T TIGR01809       126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVD  167 (282)
T ss_pred             ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence            479999999999999999999997 79999999988776543

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=95.92  E-value=0.25  Score=56.13  Aligned_cols=164  Identities=12%  Similarity=0.124  Sum_probs=100.9

Q ss_pred             EEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHh
Q 004972           18 ITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE   95 (721)
Q Consensus        18 i~l~~p~--~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~   95 (721)
                      |.-|+|.  .-+++++-.+...++++.+.+. .+-+|.|.-.++ |..|.+-+.          ........+++ .++.
T Consensus       319 vvAnd~~~~~G~~~~~~~~K~~r~i~~a~~~-~lPlV~lvDs~G-~~~g~~~E~----------~g~~~~~a~~~-~a~~  385 (512)
T TIGR01117       319 IIANQPKVMAGCLDIDSSDKIARFIRFCDAF-NIPIVTFVDVPG-FLPGVNQEY----------GGIIRHGAKVL-YAYS  385 (512)
T ss_pred             EEEeccccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCcC-ccccHHHHH----------HHHHHHHHHHH-HHHH
Confidence            3445663  3679999999999999988754 455566643333 555543221          11122333455 5678


Q ss_pred             hCCCcEEEEECCcccccchHhhh----hcCEEEeeCCceEeCc--ccccCcccccccccccc----CHHHHHH-HH--Hc
Q 004972           96 DCKKPIVAAVEGLALGGGLELAM----GCHARIAAPKTQLGLP--ELTLGVIPGTQRLPRLV----GLSKAIE-MM--LL  162 (721)
Q Consensus        96 ~~~~p~Iaav~G~a~GgG~~lal----acD~ria~~~a~~~~p--e~~~Gl~P~~~~l~r~~----G~~~a~~-l~--lt  162 (721)
                      +..+|.|+.|-|.++|||..-..    .+|+++|.+++.++.-  |....++     +.+.+    -...+.. .+  ..
T Consensus       386 ~~~vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~a~~~v~~pe~a~~i~-----~~~~l~~~~~~~~~~~~~~~~~~  460 (512)
T TIGR01117       386 EATVPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPTAEIAVMGPAGAANII-----FRKDIKEAKDPAATRKQKIAEYR  460 (512)
T ss_pred             hCCCCEEEEEcCCCchHHHHHhccccCCCCEEEEcCCCeEeecCHHHHHHHH-----hhhhcccccCHHHHHHHHHHHHH
Confidence            89999999999999888653332    2899999988887763  3322221     11111    0111111 11  12


Q ss_pred             CCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHh
Q 004972          163 SKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAA  199 (721)
Q Consensus       163 g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~  199 (721)
                      -+..++..+.+.|+||.|+++.+.......+.+.+..
T Consensus       461 ~~~~~~~~~a~~g~vD~VI~P~~tR~~l~~~l~~~~~  497 (512)
T TIGR01117       461 EEFANPYKAAARGYVDDVIEPKQTRPKIVNALAMLES  497 (512)
T ss_pred             HhhcCHHHHHhcCCCCeeEChHHHHHHHHHHHHHHhc
Confidence            2345788999999999999999888777766665433

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=95.92  E-value=0.026  Score=59.96  Aligned_cols=94  Identities=14%  Similarity=0.136  Sum_probs=64.1

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHC-C-CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cc
Q 004972          305 VRKVAVIGGGLMGSGIATAHILN-N-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  381 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~-G-~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  381 (721)
                      .+.++|||+|.++......+..- + -+|.+|+++++..++...+.++       .+.          ..+...++. ++
T Consensus       130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~-------~~~----------~~v~a~~s~~~a  192 (330)
T COG2423         130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRK-------RGG----------EAVGAADSAEEA  192 (330)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHh-------hcC----------ccceeccCHHHH
Confidence            46799999999999999888753 3 4899999999998876544332       111          123445554 77


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCC
Q 004972          382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  421 (721)
Q Consensus       382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts  421 (721)
                      +++||+|+.|+|.+..+    +.  .+.+++++-|....+
T Consensus       193 v~~aDiIvt~T~s~~Pi----l~--~~~l~~G~hI~aiGa  226 (330)
T COG2423         193 VEGADIVVTATPSTEPV----LK--AEWLKPGTHINAIGA  226 (330)
T ss_pred             hhcCCEEEEecCCCCCe----ec--HhhcCCCcEEEecCC
Confidence            89999999999854422    21  234567776654443

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=95.90  E-value=0.037  Score=55.08  Aligned_cols=128  Identities=16%  Similarity=0.201  Sum_probs=76.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHH-HHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceec---cCccc
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV---LDYSE  381 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~---~~~~~  381 (721)
                      ++|.|||+|.+|..-+..|.+.|.+|++++.+... +..           +.+.+.            +...   -..+.
T Consensus        10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~-----------l~~~~~------------i~~~~~~~~~~d   66 (205)
T TIGR01470        10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTL-----------LAEQGG------------ITWLARCFDADI   66 (205)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHH-----------HHHcCC------------EEEEeCCCCHHH
Confidence            58999999999999999999999999999986541 111           122222            2221   11245


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCC--CCCCeeEEecCC
Q 004972          382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA--HVMPLLEIVRTE  459 (721)
Q Consensus       382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~--~~~~lvEiv~~~  459 (721)
                      +.++|+||.|. ++.++...+.....    ...+++...+....               ..|..|.  ..++++--|.+.
T Consensus        67 l~~~~lVi~at-~d~~ln~~i~~~a~----~~~ilvn~~d~~e~---------------~~f~~pa~~~~g~l~iaisT~  126 (205)
T TIGR01470        67 LEGAFLVIAAT-DDEELNRRVAHAAR----ARGVPVNVVDDPEL---------------CSFIFPSIVDRSPVVVAISSG  126 (205)
T ss_pred             hCCcEEEEECC-CCHHHHHHHHHHHH----HcCCEEEECCCccc---------------CeEEEeeEEEcCCEEEEEECC
Confidence            78999999875 45666555554432    33344332222111               1233332  334454456666


Q ss_pred             CCCHHHHHHHHHHHHHc
Q 004972          460 RTSAQVILDLMTVGKII  476 (721)
Q Consensus       460 ~t~~e~~~~~~~l~~~l  476 (721)
                      ..+|.....++.-++.+
T Consensus       127 G~sP~la~~lr~~ie~~  143 (205)
T TIGR01470       127 GAAPVLARLLRERIETL  143 (205)
T ss_pred             CCCcHHHHHHHHHHHHh
Confidence            67777766666666553

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=95.87  E-value=0.026  Score=58.35  Aligned_cols=98  Identities=19%  Similarity=0.236  Sum_probs=54.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHC--CCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceec-cCc---
Q 004972          306 RKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY---  379 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~---  379 (721)
                      +||++||.|.+-.+.-......  |..|..+|+++++.+.+.+-+...+.  +.             .++++. .|.   
T Consensus       122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~--L~-------------~~m~f~~~d~~~~  186 (276)
T PF03059_consen  122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG--LS-------------KRMSFITADVLDV  186 (276)
T ss_dssp             -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H--H--------------SSEEEEES-GGGG
T ss_pred             ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc--cc-------------CCeEEEecchhcc
Confidence            5999999999977665554443  45788999999998877543331110  11             223332 121   


Q ss_pred             -cccCCCCEEEEccc--CChHHHHHHHHHHHhhCCCCeEEEe
Q 004972          380 -SEFKDVDMVIEAVI--ESVPLKQKIFSELEKACPPHCILAT  418 (721)
Q Consensus       380 -~~l~~aDlVIeavp--e~~~~k~~v~~~l~~~~~~~~ii~s  418 (721)
                       ..+.++|+|+.|.-  .+.+-|.+++..|.++++++++|+.
T Consensus       187 ~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~  228 (276)
T PF03059_consen  187 TYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVV  228 (276)
T ss_dssp             -GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEE
T ss_pred             ccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEE
Confidence             34688999999874  2344899999999999999998874

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=95.87  E-value=0.016  Score=56.36  Aligned_cols=78  Identities=22%  Similarity=0.263  Sum_probs=53.3

Q ss_pred             EEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceec-cCc----cc
Q 004972          308 VAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY----SE  381 (721)
Q Consensus       308 I~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~----~~  381 (721)
                      |.|+|+ |.+|..++..|.+.|++|+++.|++++++. .        ..+              ..+... .+.    ++
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-~--------~~~--------------~~~~~d~~d~~~~~~a   57 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-S--------PGV--------------EIIQGDLFDPDSVKAA   57 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-C--------TTE--------------EEEESCTTCHHHHHHH
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-c--------ccc--------------ccceeeehhhhhhhhh
Confidence            789997 999999999999999999999999987554 0        000              111111 111    45


Q ss_pred             cCCCCEEEEcccC---ChHHHHHHHHHHHh
Q 004972          382 FKDVDMVIEAVIE---SVPLKQKIFSELEK  408 (721)
Q Consensus       382 l~~aDlVIeavpe---~~~~k~~v~~~l~~  408 (721)
                      +++||.||.+++.   +....+.+++.+..
T Consensus        58 l~~~d~vi~~~~~~~~~~~~~~~~~~a~~~   87 (183)
T PF13460_consen   58 LKGADAVIHAAGPPPKDVDAAKNIIEAAKK   87 (183)
T ss_dssp             HTTSSEEEECCHSTTTHHHHHHHHHHHHHH
T ss_pred             hhhcchhhhhhhhhcccccccccccccccc
Confidence            6899999999973   33344445444444

...

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=95.81  E-value=0.023  Score=56.55  Aligned_cols=32  Identities=25%  Similarity=0.323  Sum_probs=30.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN  337 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~  337 (721)
                      .||.|||+|.+|+.+|..|++.|. +++++|.+
T Consensus        22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            579999999999999999999997 89999987

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=95.80  E-value=0.03  Score=58.19  Aligned_cols=77  Identities=16%  Similarity=0.152  Sum_probs=46.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHC-CCceEE-EeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcccc-
Q 004972          306 RKVAVIGGGLMGSGIATAHILN-NIYVVL-KEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF-  382 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~-G~~V~l-~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l-  382 (721)
                      .||+|||+|.||..++..+.+. +.++.. ++++.. .+....        ...             ..+..+++++.+ 
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~-~~~~~~--------~~~-------------~~~~~~~d~~~l~   59 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHS-IDAVRR--------ALG-------------EAVRVVSSVDALP   59 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCC-HHHHhh--------hhc-------------cCCeeeCCHHHhc
Confidence            5899999999999999998875 556543 333221 111100        000             123445566444 


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHH
Q 004972          383 KDVDMVIEAVIESVPLKQKIFSEL  406 (721)
Q Consensus       383 ~~aDlVIeavpe~~~~k~~v~~~l  406 (721)
                      .+.|+||+|.|  ...-.++..+.
T Consensus        60 ~~~DvVve~t~--~~~~~e~~~~a   81 (265)
T PRK13303         60 QRPDLVVECAG--HAALKEHVVPI   81 (265)
T ss_pred             cCCCEEEECCC--HHHHHHHHHHH
Confidence            56899999998  33334444443

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=95.70  E-value=0.25  Score=56.11  Aligned_cols=138  Identities=14%  Similarity=0.120  Sum_probs=83.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHH-HHHhhCCCcEEE
Q 004972           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVV-NLIEDCKKPIVA  103 (721)
Q Consensus        25 ~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~p~Ia  103 (721)
                      .-+++....+.+..+++.+.++. +-+|.|.-.|     |+.+.+-.        ..+... ...+. .....-..|.|+
T Consensus        95 gGS~g~~~~~K~~r~~e~A~~~~-lPlV~l~dSg-----Garm~eg~--------~~l~~~-~~~~~~~~~~s~~iP~Is  159 (512)
T TIGR01117        95 GGSLGEMHAAKIVKIMDLAMKMG-APVVGLNDSG-----GARIQEAV--------DALKGY-GDIFYRNTIASGVVPQIS  159 (512)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHcC-CCEEEEecCC-----CCCccccc--------hhhhhH-HHHHHHHHHHcCCCcEEE
Confidence            47888888999999998887654 4455554322     23332100        001111 11110 112234589999


Q ss_pred             EECCcccccchHhhhhcCEEEeeCC-ceEeCcccccCccccccccccccCHHHHHHHHHcCCCcCHHHH-------HHcC
Q 004972          104 AVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSEEG-------WKLG  175 (721)
Q Consensus       104 av~G~a~GgG~~lalacD~ria~~~-a~~~~pe~~~Gl~P~~~~l~r~~G~~~a~~l~ltg~~~~a~eA-------~~~G  175 (721)
                      ++.|.|+||+......||++|+.++ +.+++.                 |+.....  .+|+.+++++.       ..-|
T Consensus       160 vv~G~~~GG~a~~~al~D~vim~~~~a~i~~a-----------------GP~vv~~--~~Ge~v~~e~lGGa~~h~~~sG  220 (512)
T TIGR01117       160 AIMGPCAGGAVYSPALTDFIYMVDNTSQMFIT-----------------GPQVIKT--VTGEEVTAEQLGGAMAHNSVSG  220 (512)
T ss_pred             EEecCCCcHHHHHHHhcCceEEeccceEEEec-----------------ChHHHHh--hcCcccchhhcchHHHhccccc
Confidence            9999999999877779999999986 455553                 2222111  35666666654       2579


Q ss_pred             CccEEcCC-chHHHHHHHHHHH
Q 004972          176 LIDAVVTS-EELLKVSRLWALD  196 (721)
Q Consensus       176 lv~~vv~~-~~l~~~a~~~a~~  196 (721)
                      ++|.++++ ++..+.++++..-
T Consensus       221 v~d~~~~de~ea~~~~r~~ls~  242 (512)
T TIGR01117       221 VAHFIAEDDDDCIMLIRRLLSF  242 (512)
T ss_pred             eeEEecCChHHHHHHHHHHHHh
Confidence            99999854 4455555555443

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=95.68  E-value=0.015  Score=61.93  Aligned_cols=95  Identities=18%  Similarity=0.166  Sum_probs=54.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHH-CCC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc
Q 004972          306 RKVAVIGGGLMGSGIATAHIL-NNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  382 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~-~G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  382 (721)
                      ++++|||+|..+..-+..++. .++ +|.+|+++++++++..++++.       .+           -.+...++. +++
T Consensus       129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~-------~~-----------~~v~~~~~~~~av  190 (313)
T PF02423_consen  129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD-------LG-----------VPVVAVDSAEEAV  190 (313)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC-------CC-----------TCEEEESSHHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc-------cc-----------ccceeccchhhhc
Confidence            479999999999998887765 344 899999999998876544322       01           124555665 678


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972          383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  422 (721)
Q Consensus       383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  422 (721)
                      ++||+|+.|.+.....  .++.  ...+++++.|....+.
T Consensus       191 ~~aDii~taT~s~~~~--P~~~--~~~l~~g~hi~~iGs~  226 (313)
T PF02423_consen  191 RGADIIVTATPSTTPA--PVFD--AEWLKPGTHINAIGSY  226 (313)
T ss_dssp             TTSSEEEE----SSEE--ESB---GGGS-TT-EEEE-S-S
T ss_pred             ccCCEEEEccCCCCCC--cccc--HHHcCCCcEEEEecCC
Confidence            9999999999744410  1111  2356788877665554

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.66  E-value=0.049  Score=60.71  Aligned_cols=37  Identities=30%  Similarity=0.452  Sum_probs=33.6

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHH
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYL  341 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~  341 (721)
                      .++|+|||.|.+|.++|..|.+.|++|+++|.+++..
T Consensus         3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~   39 (418)
T PRK00683          3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEAL   39 (418)
T ss_pred             CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcccc
Confidence            4689999999999999999999999999999887643

>PRK07589 ornithine cyclodeaminase; Validated

Probab=95.61  E-value=0.05  Score=58.51  Aligned_cols=95  Identities=14%  Similarity=0.173  Sum_probs=62.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHC-C-CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc
Q 004972          306 RKVAVIGGGLMGSGIATAHILN-N-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  382 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~-G-~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  382 (721)
                      ++++|||+|..+...+..+..- . .+|++|++++++.+...+++++       .+           -.+...++. +++
T Consensus       130 ~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~-------~~-----------~~v~~~~~~~~av  191 (346)
T PRK07589        130 RTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAG-------PG-----------LRIVACRSVAEAV  191 (346)
T ss_pred             cEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHh-------cC-----------CcEEEeCCHHHHH
Confidence            5899999999998887766542 3 4899999999998876544321       11           023444555 678


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972          383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  422 (721)
Q Consensus       383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  422 (721)
                      ++||+|+.|.+....  ..++.  .+.+++++.|....|.
T Consensus       192 ~~ADIIvtaT~S~~~--~Pvl~--~~~lkpG~hV~aIGs~  227 (346)
T PRK07589        192 EGADIITTVTADKTN--ATILT--DDMVEPGMHINAVGGD  227 (346)
T ss_pred             hcCCEEEEecCCCCC--Cceec--HHHcCCCcEEEecCCC
Confidence            999999999863210  01121  1346788876655554

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=95.60  E-value=0.37  Score=51.33  Aligned_cols=40  Identities=23%  Similarity=0.131  Sum_probs=33.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  345 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  345 (721)
                      ++|+|+|+|-.|..-.+.+...|.+|+.+|+++++.+.++
T Consensus       168 ~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~  207 (339)
T COG1064         168 KWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAK  207 (339)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHH
Confidence            5899999997776666666668999999999999987764

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=95.60  E-value=0.016  Score=63.87  Aligned_cols=68  Identities=19%  Similarity=0.177  Sum_probs=49.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  383 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  383 (721)
                      +||.|||+|-||..++..|+..|. ++++++|+.++++...+.+        ..+            .....+++ +.+.
T Consensus       182 kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~--------~~~------------~~~~~~~l~~~l~  241 (414)
T PRK13940        182 KNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAF--------RNA------------SAHYLSELPQLIK  241 (414)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHh--------cCC------------eEecHHHHHHHhc
Confidence            579999999999999999999995 7999999988766543211        001            01111222 5578


Q ss_pred             CCCEEEEccc
Q 004972          384 DVDMVIEAVI  393 (721)
Q Consensus       384 ~aDlVIeavp  393 (721)
                      ++|+||.|++
T Consensus       242 ~aDiVI~aT~  251 (414)
T PRK13940        242 KADIIIAAVN  251 (414)
T ss_pred             cCCEEEECcC
Confidence            8999999886

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=95.57  E-value=0.029  Score=60.37  Aligned_cols=33  Identities=21%  Similarity=0.438  Sum_probs=30.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  338 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~  338 (721)
                      ++|.|||+|.+|+.+|..|++.|+ +++++|.+.
T Consensus        25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            579999999999999999999998 899999875

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=95.54  E-value=0.11  Score=46.29  Aligned_cols=89  Identities=22%  Similarity=0.205  Sum_probs=57.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceec-cCc-----cc
Q 004972          308 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY-----SE  381 (721)
Q Consensus       308 I~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-----~~  381 (721)
                      |.|+|.|.+|..++..|.+.+.+|+++|.+++..+.+.+.           |.          ..+... ++.     ..
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-----------~~----------~~i~gd~~~~~~l~~a~   59 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE-----------GV----------EVIYGDATDPEVLERAG   59 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-----------TS----------EEEES-TTSHHHHHHTT
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-----------cc----------ccccccchhhhHHhhcC
Confidence            6799999999999999999777999999999997775421           10          011110 111     34


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEe
Q 004972          382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT  418 (721)
Q Consensus       382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s  418 (721)
                      +++||.||.+.+++ .....+...+....+.-.+++-
T Consensus        60 i~~a~~vv~~~~~d-~~n~~~~~~~r~~~~~~~ii~~   95 (116)
T PF02254_consen   60 IEKADAVVILTDDD-EENLLIALLARELNPDIRIIAR   95 (116)
T ss_dssp             GGCESEEEEESSSH-HHHHHHHHHHHHHTTTSEEEEE
T ss_pred             ccccCEEEEccCCH-HHHHHHHHHHHHHCCCCeEEEE
Confidence            68899999988754 3333333444444444556554

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=95.44  E-value=0.051  Score=45.91  Aligned_cols=31  Identities=35%  Similarity=0.460  Sum_probs=28.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHC-CCceEEEeC
Q 004972          306 RKVAVIGGGLMGSGIATAHILN-NIYVVLKEV  336 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~-G~~V~l~d~  336 (721)
                      ++++|+|+|.+|.+++..+... +.+|++||+
T Consensus        24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            6899999999999999999998 678999986

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=95.40  E-value=0.063  Score=55.36  Aligned_cols=92  Identities=23%  Similarity=0.270  Sum_probs=64.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCcee-cc---Cc-c
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VL---DY-S  380 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~---~~-~  380 (721)
                      .||+|||.|..|.--|+...--|-+|++.|+|.+++...-+.                     ...++.. .+   ++ +
T Consensus       169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~---------------------f~~rv~~~~st~~~iee  227 (371)
T COG0686         169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDL---------------------FGGRVHTLYSTPSNIEE  227 (371)
T ss_pred             ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHh---------------------hCceeEEEEcCHHHHHH
Confidence            589999999999999999888899999999999987764211                     1122221 11   22 6


Q ss_pred             ccCCCCEEEEcccC-ChHHHHHHHHHHHhhCCCCeEEEe
Q 004972          381 EFKDVDMVIEAVIE-SVPLKQKIFSELEKACPPHCILAT  418 (721)
Q Consensus       381 ~l~~aDlVIeavpe-~~~~k~~v~~~l~~~~~~~~ii~s  418 (721)
                      .+..+|+||-+|-- ..+.=+-+.+++.+.++++++|++
T Consensus       228 ~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivD  266 (371)
T COG0686         228 AVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVD  266 (371)
T ss_pred             HhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEE
Confidence            68999999988721 111112345666777889998875

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=95.40  E-value=0.045  Score=49.17  Aligned_cols=80  Identities=15%  Similarity=0.145  Sum_probs=55.3

Q ss_pred             eeEEEEc----CCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccc
Q 004972          306 RKVAVIG----GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  381 (721)
Q Consensus       306 ~kI~VIG----~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  381 (721)
                      ++|+|||    .+.+|.-+...|.+.|++|+.++...+.+                             ..+....++++
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i-----------------------------~G~~~y~sl~e   51 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI-----------------------------LGIKCYPSLAE   51 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE-----------------------------TTEE-BSSGGG
T ss_pred             CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE-----------------------------CcEEeeccccC
Confidence            5799999    58889999999999999999998765431                             12444555543


Q ss_pred             c-CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEE
Q 004972          382 F-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA  417 (721)
Q Consensus       382 l-~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~  417 (721)
                      . ...|+++.++|  .+...++++++... ....+++
T Consensus        52 ~p~~iDlavv~~~--~~~~~~~v~~~~~~-g~~~v~~   85 (116)
T PF13380_consen   52 IPEPIDLAVVCVP--PDKVPEIVDEAAAL-GVKAVWL   85 (116)
T ss_dssp             CSST-SEEEE-S---HHHHHHHHHHHHHH-T-SEEEE
T ss_pred             CCCCCCEEEEEcC--HHHHHHHHHHHHHc-CCCEEEE
Confidence            4 78999999999  88888898888766 3344443

>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional

Probab=95.38  E-value=0.022  Score=62.61  Aligned_cols=40  Identities=25%  Similarity=0.266  Sum_probs=34.4

Q ss_pred             eeEEEEcCCCCcHHH-HHHHHHCCCceEEEeCCHHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGI-ATAHILNNIYVVLKEVNSEYLLKGI  345 (721)
Q Consensus       306 ~kI~VIG~G~mG~~i-A~~la~~G~~V~l~d~~~~~~~~~~  345 (721)
                      +||.++|+|.||++. +..|.+.|++|+++|++++.++...
T Consensus         1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~   41 (381)
T PRK02318          1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALN   41 (381)
T ss_pred             CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHh
Confidence            479999999999855 8888999999999999888766653

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=95.33  E-value=0.041  Score=57.27  Aligned_cols=42  Identities=14%  Similarity=0.129  Sum_probs=37.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKT  347 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~  347 (721)
                      ++|.|+|+|-++.+++..|++.|. +|++++|+.+++++..+.
T Consensus       127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~  169 (283)
T COG0169         127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADL  169 (283)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Confidence            689999999999999999999995 799999999998876543

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=95.24  E-value=0.026  Score=61.44  Aligned_cols=40  Identities=25%  Similarity=0.218  Sum_probs=36.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCC-CceEEEeCCHHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGI  345 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~  345 (721)
                      ++|.|||+|-||...|.+|..+| ..|++.+|+.+++....
T Consensus       179 ~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La  219 (414)
T COG0373         179 KKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELA  219 (414)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH
Confidence            58999999999999999999999 58999999999987654

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=95.22  E-value=0.024  Score=62.39  Aligned_cols=38  Identities=26%  Similarity=0.302  Sum_probs=32.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHCC-C-ceEEEeCCHHHHHHHH
Q 004972          308 VAVIGGGLMGSGIATAHILNN-I-YVVLKEVNSEYLLKGI  345 (721)
Q Consensus       308 I~VIG~G~mG~~iA~~la~~G-~-~V~l~d~~~~~~~~~~  345 (721)
                      |.|+|+|.+|+.++..|++.+ + +|++.|++.+++++..
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~   40 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLA   40 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHH
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHH
Confidence            789999999999999999986 4 8999999999987754

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=95.17  E-value=0.061  Score=55.90  Aligned_cols=32  Identities=34%  Similarity=0.436  Sum_probs=26.1

Q ss_pred             eeEEEEc-CCCCcHHHHHHHHH-CCCceE-EEeCC
Q 004972          306 RKVAVIG-GGLMGSGIATAHIL-NNIYVV-LKEVN  337 (721)
Q Consensus       306 ~kI~VIG-~G~mG~~iA~~la~-~G~~V~-l~d~~  337 (721)
                      .||+|+| +|.||..++..+.. .+++++ ++|+.
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~   36 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERH   36 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence            5899999 59999999999986 477765 57743

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=95.15  E-value=0.11  Score=60.64  Aligned_cols=94  Identities=19%  Similarity=0.209  Sum_probs=63.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCcee-ccCc-----
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDY-----  379 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~-----  379 (721)
                      .+|.|+|.|.+|..+++.|.+.|++++++|.|+++++.+.+           .|.          ..+.. .++.     
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-----------~g~----------~v~~GDat~~~~L~~  459 (601)
T PRK03659        401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK-----------YGY----------KVYYGDATQLELLRA  459 (601)
T ss_pred             CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-----------CCC----------eEEEeeCCCHHHHHh
Confidence            57999999999999999999999999999999999887532           110          00111 1111     


Q ss_pred             cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCC
Q 004972          380 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  421 (721)
Q Consensus       380 ~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts  421 (721)
                      ..+++||.||.+++++.. ...+...+.+..++-.|++-..+
T Consensus       460 agi~~A~~vv~~~~d~~~-n~~i~~~~r~~~p~~~IiaRa~~  500 (601)
T PRK03659        460 AGAEKAEAIVITCNEPED-TMKIVELCQQHFPHLHILARARG  500 (601)
T ss_pred             cCCccCCEEEEEeCCHHH-HHHHHHHHHHHCCCCeEEEEeCC
Confidence            346899999999986544 33444445555555566654333

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.07  E-value=0.13  Score=57.91  Aligned_cols=39  Identities=23%  Similarity=0.285  Sum_probs=36.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  344 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  344 (721)
                      ++|.|+|+|.+|..++..|.+.|++|+++|++++.++.+
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~   39 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRL   39 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHH
Confidence            379999999999999999999999999999999987664

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.03  E-value=0.041  Score=57.13  Aligned_cols=72  Identities=17%  Similarity=0.252  Sum_probs=54.2

Q ss_pred             eeEEEEcCCCC-cHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972          306 RKVAVIGGGLM-GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  383 (721)
Q Consensus       306 ~kI~VIG~G~m-G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  383 (721)
                      ++|+|||.|.. |.++|..|.+.|..|+++....                                      .++ +.++
T Consensus       159 k~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t--------------------------------------~~l~~~~~  200 (285)
T PRK14189        159 AHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKT--------------------------------------RDLAAHTR  200 (285)
T ss_pred             CEEEEECCCCccHHHHHHHHHHCCCEEEEecCCC--------------------------------------CCHHHHhh
Confidence            58999999877 9999999999999999876422                                      122 3468


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972          384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  422 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  422 (721)
                      +||+||.|++-.     .++..  ..+++++++++....
T Consensus       201 ~ADIVV~avG~~-----~~i~~--~~ik~gavVIDVGin  232 (285)
T PRK14189        201 QADIVVAAVGKR-----NVLTA--DMVKPGATVIDVGMN  232 (285)
T ss_pred             hCCEEEEcCCCc-----CccCH--HHcCCCCEEEEcccc
Confidence            899999999822     23332  668899998875543

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=95.03  E-value=0.075  Score=53.95  Aligned_cols=160  Identities=12%  Similarity=0.136  Sum_probs=82.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhc----C--ceec---
Q 004972          307 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALK----M--LKGV---  376 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~--i~~~---  376 (721)
                      ||.|||+|-.|+.++..|+..|. +++++|.+.=.......   +.+-..-.-|+-..+.+.+.+.    .  +...   
T Consensus         1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnR---Qflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~   77 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNR---QFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNK   77 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhcc---ccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEecc
Confidence            68999999999999999999997 78899976322111100   0000000111111111111111    1  1110   


Q ss_pred             ----cCc--cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecC-CCCCHHHHhcccCCCCcEEEecCCCCCCC
Q 004972          377 ----LDY--SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT-STIDLNIVGEKTSSQDRIIGAHFFSPAHV  449 (721)
Q Consensus       377 ----~~~--~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t-s~~~i~~l~~~~~~~~r~ig~h~~~p~~~  449 (721)
                          .+.  +.+++.|+||.|+- +.+. +..+.+.....  +..++... .+.. ....-..+....+...++..+...
T Consensus        78 i~~~~~~~~~f~~~~DvVi~a~D-n~~a-R~~ln~~c~~~--~iplI~~g~~G~~-G~v~vi~p~~t~c~~C~~~~~~~~  152 (234)
T cd01484          78 VGPEQDFNDTFFEQFHIIVNALD-NIIA-RRYVNGMLIFL--IVPLIESGTEGFK-GNAQVILPGMTECIECTLYPPQKN  152 (234)
T ss_pred             CChhhhchHHHHhCCCEEEECCC-CHHH-HHHHHHHHHHc--CCCEEEEcccCCc-eEEEEEcCCCCCCcccCCCCCCCC
Confidence                111  33688999999975 4443 44444433222  33344322 2221 111111111122333344444445


Q ss_pred             CCeeEEecCCCCCHHHHHHHHHHHH
Q 004972          450 MPLLEIVRTERTSAQVILDLMTVGK  474 (721)
Q Consensus       450 ~~lvEiv~~~~t~~e~~~~~~~l~~  474 (721)
                      .|...+-..|.+.+..+++++.++.
T Consensus       153 ~p~Cti~~~P~~~~hci~~a~~~~~  177 (234)
T cd01484         153 FPMCTIASMPRLPEHCIEWARMLQW  177 (234)
T ss_pred             CCccccCCCCCCchHHHHHHHHHHh
Confidence            6778888888888888999888876

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=95.03  E-value=0.047  Score=58.73  Aligned_cols=33  Identities=21%  Similarity=0.414  Sum_probs=30.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  338 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~  338 (721)
                      .||.|||+|.+|+.+|..|++.|. +++++|.+.
T Consensus        25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            589999999999999999999998 899999874

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=95.03  E-value=0.13  Score=59.73  Aligned_cols=91  Identities=15%  Similarity=0.189  Sum_probs=61.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceec-cCc-----
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY-----  379 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-----  379 (721)
                      .+|.|+|.|.+|..+|..|.+.|++|+++|.|+++++.+.+           .|.          ..+... ++.     
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~-----------~g~----------~~i~GD~~~~~~L~~  476 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE-----------RGI----------RAVLGNAANEEIMQL  476 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-----------CCC----------eEEEcCCCCHHHHHh
Confidence            57999999999999999999999999999999998877532           110          001110 111     


Q ss_pred             cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEe
Q 004972          380 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT  418 (721)
Q Consensus       380 ~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s  418 (721)
                      ..+++||.||.++++|.+... +...+....+.-.|++-
T Consensus       477 a~i~~a~~viv~~~~~~~~~~-iv~~~~~~~~~~~iiar  514 (558)
T PRK10669        477 AHLDCARWLLLTIPNGYEAGE-IVASAREKRPDIEIIAR  514 (558)
T ss_pred             cCccccCEEEEEcCChHHHHH-HHHHHHHHCCCCeEEEE
Confidence            346799999999987665432 33334444343445543

>PRK06199 ornithine cyclodeaminase; Validated

Probab=95.02  E-value=0.047  Score=59.65  Aligned_cols=74  Identities=18%  Similarity=0.153  Sum_probs=53.0

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHC--CC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-c
Q 004972          305 VRKVAVIGGGLMGSGIATAHILN--NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  380 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~--G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  380 (721)
                      .++++|||+|.++......++.-  .+ +|.+|+++++++++..+++...+.     +.          ..+...++. +
T Consensus       155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~-----~~----------~~v~~~~s~~e  219 (379)
T PRK06199        155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYP-----QI----------TNVEVVDSIEE  219 (379)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcC-----CC----------ceEEEeCCHHH
Confidence            36899999999999999888763  23 899999999998876544332110     00          014445555 6


Q ss_pred             ccCCCCEEEEccc
Q 004972          381 EFKDVDMVIEAVI  393 (721)
Q Consensus       381 ~l~~aDlVIeavp  393 (721)
                      ++++||+|+.|.+
T Consensus       220 av~~ADIVvtaT~  232 (379)
T PRK06199        220 VVRGSDIVTYCNS  232 (379)
T ss_pred             HHcCCCEEEEccC
Confidence            7899999999886

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=95.00  E-value=0.089  Score=59.41  Aligned_cols=40  Identities=25%  Similarity=0.123  Sum_probs=37.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  345 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  345 (721)
                      .||.|+|+|.+|...++.+...|.+|+++|+++++++.+.
T Consensus       166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~ae  205 (509)
T PRK09424        166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVE  205 (509)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            6899999999999999999999999999999999988764

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=94.91  E-value=0.085  Score=57.02  Aligned_cols=100  Identities=16%  Similarity=0.143  Sum_probs=57.8

Q ss_pred             ceeEEEEcC-CCCcHHHHHHHHHC-CCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc--c
Q 004972          305 VRKVAVIGG-GLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY--S  380 (721)
Q Consensus       305 ~~kI~VIG~-G~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~  380 (721)
                      |.||+|||+ |.+|..++..+.+. +++++.+-.+.+..+...+    .....  .+.          .... .++.  .
T Consensus         2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~----~~~~~--~~~----------~~~~-~~~~~~~   64 (343)
T PRK00436          2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSD----VHPHL--RGL----------VDLV-LEPLDPE   64 (343)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHH----hCccc--ccc----------cCce-eecCCHH
Confidence            469999997 99999999999876 6677554333322111110    00000  000          0001 1112  1


Q ss_pred             ccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH
Q 004972          381 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN  426 (721)
Q Consensus       381 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~  426 (721)
                      ...++|+|+.|+|..  .-.++..++.   ..++.|+++++...+.
T Consensus        65 ~~~~vD~Vf~alP~~--~~~~~v~~a~---~aG~~VID~S~~fR~~  105 (343)
T PRK00436         65 ILAGADVVFLALPHG--VSMDLAPQLL---EAGVKVIDLSADFRLK  105 (343)
T ss_pred             HhcCCCEEEECCCcH--HHHHHHHHHH---hCCCEEEECCcccCCC
Confidence            346799999999954  3334444432   4678889999887663

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=94.84  E-value=0.19  Score=56.60  Aligned_cols=41  Identities=27%  Similarity=0.289  Sum_probs=37.4

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  345 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  345 (721)
                      .++|.|+|+|.+|..++..|.+.|++|+++|.+++..+...
T Consensus       231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~  271 (453)
T PRK09496        231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELA  271 (453)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHH
Confidence            47899999999999999999999999999999999877653

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=94.84  E-value=0.086  Score=59.37  Aligned_cols=40  Identities=25%  Similarity=0.136  Sum_probs=36.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  345 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  345 (721)
                      .|+.|+|+|.+|...+..+...|..|+++|+++++++.+.
T Consensus       165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~  204 (511)
T TIGR00561       165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQ  204 (511)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            6899999999999999999999999999999999877653

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=94.83  E-value=0.77  Score=52.65  Aligned_cols=141  Identities=16%  Similarity=0.093  Sum_probs=85.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHH--HHHhhCCCcEE
Q 004972           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVV--NLIEDCKKPIV  102 (721)
Q Consensus        25 ~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~p~I  102 (721)
                      ..+++....+.+..+++.+.+.. +-+|.|.-.++.     .+.+     ..+ .......+.+++.  ..+.....|.|
T Consensus       142 GGs~g~~~~~Ki~r~~elA~~~~-lPlV~l~DSgGa-----rl~~-----q~e-~~~~~~~~g~if~~~~~ls~~~VP~I  209 (569)
T PLN02820        142 GGTYYPITVKKHLRAQEIAAQCR-LPCIYLVDSGGA-----NLPR-----QAE-VFPDRDHFGRIFYNQARMSSAGIPQI  209 (569)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCCCc-----CCcc-----ccc-ccchHhHHHHHHHHHHHHhCCCCCEE
Confidence            48899999999999999887653 456666543333     2211     000 0000001112221  12445679999


Q ss_pred             EEECCcccccchHhhhhcCEEEeeC-CceEeCcccccCccccccccccccCHHHHHHHHHcCCCcCHHHHH-------Hc
Q 004972          103 AAVEGLALGGGLELAMGCHARIAAP-KTQLGLPELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSEEGW-------KL  174 (721)
Q Consensus       103 aav~G~a~GgG~~lalacD~ria~~-~a~~~~pe~~~Gl~P~~~~l~r~~G~~~a~~l~ltg~~~~a~eA~-------~~  174 (721)
                      ++|.|.|.|||......||++|+++ ++.+++.                 |+.....  .+|+.+++++.-       .-
T Consensus       210 svv~G~~~gGgAy~~a~~D~vim~~~~a~i~~a-----------------GP~vV~~--~~Ge~v~~eeLGGa~~h~~~s  270 (569)
T PLN02820        210 ALVLGSCTAGGAYVPAMADESVIVKGNGTIFLA-----------------GPPLVKA--ATGEEVSAEDLGGADVHCKVS  270 (569)
T ss_pred             EEEeCCCChHHHHHHHhCCceEEecCCcEEEec-----------------CHHHHHh--hcCcccCHHHhCCHHHhcccc
Confidence            9999999999999999999999985 4656553                 2222221  456777776652       46


Q ss_pred             CCccEEcCCchHHHHHHHHHHHHHh
Q 004972          175 GLIDAVVTSEELLKVSRLWALDIAA  199 (721)
Q Consensus       175 Glv~~vv~~~~l~~~a~~~a~~~a~  199 (721)
                      |.+|.++++|   .++...++++.+
T Consensus       271 Gv~d~~~~de---~~a~~~~R~lls  292 (569)
T PLN02820        271 GVSDHFAQDE---LHALAIGRNIVK  292 (569)
T ss_pred             cccccccCch---HHHHHHHHHHHH
Confidence            8888888654   334444444443

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.80  E-value=0.084  Score=55.19  Aligned_cols=71  Identities=15%  Similarity=0.211  Sum_probs=51.6

Q ss_pred             eeEEEEcCCC-CcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972          306 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  384 (721)
                      ++|.|||.|. .|.++|..|.+.|..|+++++....+.                                     +.+++
T Consensus       160 k~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~~L~-------------------------------------~~~~~  202 (283)
T PRK14192        160 KHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQNLP-------------------------------------ELVKQ  202 (283)
T ss_pred             CEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCchhHH-------------------------------------HHhcc
Confidence            5899999997 999999999999999999997432211                                     22478


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  420 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t  420 (721)
                      ||+||-|++...-     +.  .+.+++++++++..
T Consensus       203 aDIvI~AtG~~~~-----v~--~~~lk~gavViDvg  231 (283)
T PRK14192        203 ADIIVGAVGKPEL-----IK--KDWIKQGAVVVDAG  231 (283)
T ss_pred             CCEEEEccCCCCc-----CC--HHHcCCCCEEEEEE
Confidence            9999999952221     11  13467888887543

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=94.78  E-value=0.17  Score=51.17  Aligned_cols=32  Identities=22%  Similarity=0.343  Sum_probs=30.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCc---eEEEeCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIY---VVLKEVN  337 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~---V~l~d~~  337 (721)
                      +||.|+|+|.+|.++|..|...|..   |+++|++
T Consensus        26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~   60 (226)
T cd05311          26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK   60 (226)
T ss_pred             CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence            5899999999999999999999975   9999999

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=94.78  E-value=0.042  Score=45.62  Aligned_cols=35  Identities=37%  Similarity=0.470  Sum_probs=32.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHH
Q 004972          307 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYL  341 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~  341 (721)
                      ||.|||+|..|.-+|..|++.|.+|+++++++.-.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~   35 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL   35 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence            68999999999999999999999999999987655

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=94.75  E-value=0.092  Score=56.64  Aligned_cols=106  Identities=13%  Similarity=0.054  Sum_probs=56.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHC-CCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHh-hcCceeccCc-cc
Q 004972          306 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNA-LKMLKGVLDY-SE  381 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~i~~~~~~-~~  381 (721)
                      .||+|+|+|.||..++..+... +++|+ +.|.+++.........  .++   -.+... ...... -..+....++ +.
T Consensus         2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~--G~~---~~~~~~-~~~~~~~~~~i~V~~~~~el   75 (341)
T PRK04207          2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEK--GYP---LYVADP-EREKAFEEAGIPVAGTIEDL   75 (341)
T ss_pred             eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhc--CCC---ccccCc-cccccccCCceEEcCChhHh
Confidence            5899999999999999988764 56766 4555544333221100  000   000000 000000 0124444444 34


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972          382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  422 (721)
Q Consensus       382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  422 (721)
                      +.++|+||+|.|..  .-.+...   .+++.++.++++++.
T Consensus        76 ~~~vDVVIdaT~~~--~~~e~a~---~~~~aGk~VI~~~~~  111 (341)
T PRK04207         76 LEKADIVVDATPGG--VGAKNKE---LYEKAGVKAIFQGGE  111 (341)
T ss_pred             hccCCEEEECCCch--hhHHHHH---HHHHCCCEEEEcCCC
Confidence            57899999999843  3334333   333445666666664

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=94.68  E-value=0.025  Score=62.73  Aligned_cols=34  Identities=26%  Similarity=0.346  Sum_probs=31.9

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCH
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  338 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~  338 (721)
                      |.+|.|||+|.+|.++|..|++.|++|+++|++.
T Consensus         1 ~~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~   34 (410)
T PRK12409          1 MSHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR   34 (410)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            3689999999999999999999999999999975

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=94.65  E-value=0.16  Score=53.55  Aligned_cols=147  Identities=20%  Similarity=0.214  Sum_probs=80.0

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCCc---eEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccc
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNIY---VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  381 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~~---V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  381 (721)
                      .||||+|+ |.+|.-+...|.+..++   +.++-.....=++...        ... ..+         .-.....+...
T Consensus         2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~--------f~~-~~~---------~v~~~~~~~~~   63 (334)
T COG0136           2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIE--------FGG-KSI---------GVPEDAADEFV   63 (334)
T ss_pred             cEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCcccc--------ccC-ccc---------cCccccccccc
Confidence            58999997 99999999999997543   4444433322111000        000 000         00111233455


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCee---EEecC
Q 004972          382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLL---EIVRT  458 (721)
Q Consensus       382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lv---Eiv~~  458 (721)
                      .+++|+|+-|.+  .+.-+++..++.   +.++++++|+|......=.-        +-+-..||-++...-   -|+.+
T Consensus        64 ~~~~Divf~~ag--~~~s~~~~p~~~---~~G~~VIdnsSa~Rm~~DVP--------LVVPeVN~~~l~~~~~rg~Iian  130 (334)
T COG0136          64 FSDVDIVFFAAG--GSVSKEVEPKAA---EAGCVVIDNSSAFRMDPDVP--------LVVPEVNPEHLIDYQKRGFIIAN  130 (334)
T ss_pred             cccCCEEEEeCc--hHHHHHHHHHHH---HcCCEEEeCCcccccCCCCC--------EecCCcCHHHHHhhhhCCCEEEC
Confidence            679999999998  444456655554   46799999999866542111        111112222111100   14444


Q ss_pred             CC-CCHHHHHHHHHHHHHcCCeeEEE
Q 004972          459 ER-TSAQVILDLMTVGKIIKKVPVVV  483 (721)
Q Consensus       459 ~~-t~~e~~~~~~~l~~~lG~~~v~v  483 (721)
                      ++ +....+-.+.++.+..+-.-+++
T Consensus       131 pNCst~~l~~aL~PL~~~~~i~~v~V  156 (334)
T COG0136         131 PNCSTIQLVLALKPLHDAFGIKRVVV  156 (334)
T ss_pred             CChHHHHHHHHHHHHHhhcCceEEEE
Confidence            44 34566677778888777544443

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=94.60  E-value=0.14  Score=47.74  Aligned_cols=31  Identities=26%  Similarity=0.401  Sum_probs=29.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCC
Q 004972          307 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVN  337 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~  337 (721)
                      ||.|||+|.+|+.++..|++.|+ +++++|.+
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d   32 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD   32 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            58999999999999999999998 79999976

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK06153 hypothetical protein; Provisional

Probab=94.57  E-value=0.066  Score=57.66  Aligned_cols=32  Identities=25%  Similarity=0.267  Sum_probs=29.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN  337 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~  337 (721)
                      .+|+|||+|-.|+.++..|++.|. +++++|-+
T Consensus       177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D  209 (393)
T PRK06153        177 QRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD  209 (393)
T ss_pred             CcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence            479999999999999999999997 89999976

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=94.50  E-value=0.28  Score=46.62  Aligned_cols=32  Identities=22%  Similarity=0.332  Sum_probs=29.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVN  337 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~  337 (721)
                      ++|.|||+|.+|...+..|...|++|++++.+
T Consensus        14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~   45 (157)
T PRK06719         14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE   45 (157)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence            68999999999999999999999999999643

>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=94.46  E-value=0.024  Score=55.50  Aligned_cols=54  Identities=20%  Similarity=0.210  Sum_probs=49.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHh
Q 004972          617 EKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAV  671 (721)
Q Consensus       617 ~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~  671 (721)
                      .++..||+.++++||.-+++..||. +..|+|.+|..|+|.+-.-.||++.+.+-
T Consensus       188 ~Gf~lnriq~Ailne~wrLvasGil-~v~dvD~VmS~GLG~RYAflG~lET~HLN  241 (313)
T KOG2305|consen  188 LGFALNRIQYAILNETWRLVASGIL-NVNDVDAVMSAGLGPRYAFLGPLETAHLN  241 (313)
T ss_pred             ccceeccccHHHHHHHHHHHHccCc-chhhHHHHHhcCCCcchhcccchhhhhcC
Confidence            4789999999999999999999999 89999999999999777778999988654

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=94.40  E-value=0.051  Score=56.93  Aligned_cols=41  Identities=15%  Similarity=0.268  Sum_probs=36.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK  346 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~  346 (721)
                      ++|.|+|+|-.|.+++..|+..|. +|+++||+.++.+...+
T Consensus       128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~  169 (283)
T PRK14027        128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALAD  169 (283)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHH
Confidence            579999999999999999999997 79999999988776543

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=94.25  E-value=0.26  Score=57.76  Aligned_cols=91  Identities=14%  Similarity=0.215  Sum_probs=61.5

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCcee-ccCc----
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDY----  379 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~----  379 (721)
                      -++|-|+|.|.+|..+++.|.+.|++++++|.|+++++.+.+           .|.          ..+.. .++.    
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-----------~g~----------~v~~GDat~~~~L~  458 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK-----------FGM----------KVFYGDATRMDLLE  458 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-----------cCC----------eEEEEeCCCHHHHH
Confidence            368999999999999999999999999999999999887632           110          00111 1121    


Q ss_pred             -cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEE
Q 004972          380 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA  417 (721)
Q Consensus       380 -~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~  417 (721)
                       ..+++||+||.++.++ +....+...+.++.++-.|++
T Consensus       459 ~agi~~A~~vvv~~~d~-~~n~~i~~~ar~~~p~~~iia  496 (621)
T PRK03562        459 SAGAAKAEVLINAIDDP-QTSLQLVELVKEHFPHLQIIA  496 (621)
T ss_pred             hcCCCcCCEEEEEeCCH-HHHHHHHHHHHHhCCCCeEEE
Confidence             3467899999998644 333344444555444444554

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=94.17  E-value=0.2  Score=54.43  Aligned_cols=40  Identities=23%  Similarity=0.232  Sum_probs=35.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHHH
Q 004972          307 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK  346 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~  346 (721)
                      +|.|+|+|.+|...++.+...|. +|++.|+++++++.+++
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~  211 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE  211 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence            79999999999999888888885 78889999999988743

>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]

Probab=94.17  E-value=1.1  Score=45.51  Aligned_cols=160  Identities=15%  Similarity=0.177  Sum_probs=101.5

Q ss_pred             EEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHH
Q 004972           15 VAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL   93 (721)
Q Consensus        15 v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (721)
                      ++...++-. -.-.+..-.-+.+..+++.+..+ .+..|+++.+|+     +-+.|=.-    . .-.+. .....+ ..
T Consensus       124 vv~av~df~FmgGSmGsVvGeki~ra~E~A~e~-k~P~v~f~aSGG-----ARMQEg~l----S-LMQMa-ktsaAl-~~  190 (294)
T COG0777         124 VVLAVMDFAFMGGSMGSVVGEKITRAIERAIED-KLPLVLFSASGG-----ARMQEGIL----S-LMQMA-KTSAAL-KR  190 (294)
T ss_pred             EEEEEEeccccccchhHHHHHHHHHHHHHHHHh-CCCEEEEecCcc-----hhHhHHHH----H-HHHHH-HHHHHH-HH
Confidence            444444443 23567777788888888888755 477888887653     22222000    0 00011 112334 45


Q ss_pred             HhhCCCcEEEEECCccccc-chHhhhhcCEEEeeCCceEeCcccccCccccccccccccCHHHHHHHHHcCCCcCHHHHH
Q 004972           94 IEDCKKPIVAAVEGLALGG-GLELAMGCHARIAAPKTQLGLPELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSEEGW  172 (721)
Q Consensus        94 l~~~~~p~Iaav~G~a~Gg-G~~lalacD~ria~~~a~~~~pe~~~Gl~P~~~~l~r~~G~~~a~~l~ltg~~~~a~eA~  172 (721)
                      +..-..|.|+.+..++.|| ...+++..|+.||-+.|.+||..-++=    -+.....++..          --+++-.+
T Consensus       191 l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAGpRVI----EQTire~LPeg----------fQ~aEfLl  256 (294)
T COG0777         191 LSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGPRVI----EQTIREKLPEG----------FQTAEFLL  256 (294)
T ss_pred             HHhcCCceEEEecCCCccchhHhHHhccCeeecCcccccccCcchhh----hhhhcccCCcc----------hhhHHHHH
Confidence            7788999999999999998 469999999999999988887633210    11111111111          12577788


Q ss_pred             HcCCccEEcCCchHHHHHHHHHHHHHhcC
Q 004972          173 KLGLIDAVVTSEELLKVSRLWALDIAARR  201 (721)
Q Consensus       173 ~~Glv~~vv~~~~l~~~a~~~a~~~a~~~  201 (721)
                      +.|+||.||+..++......+...+...+
T Consensus       257 ehG~iD~iv~R~elr~tla~ll~~~~~~~  285 (294)
T COG0777         257 EHGMIDMIVHRDELRTTLASLLAKLTPQP  285 (294)
T ss_pred             HcCCceeeecHHHHHHHHHHHHHHhCCCC
Confidence            99999999999988887776665555443

>PLN03075 nicotianamine synthase; Provisional

Probab=94.16  E-value=0.38  Score=50.32  Aligned_cols=101  Identities=18%  Similarity=0.150  Sum_probs=68.0

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHC--CCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceec-cCc--
Q 004972          305 VRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY--  379 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~--  379 (721)
                      -++|+.||+|..|.+-...++..  +-.++.+|++++.++.+++.+.+.      .+ +        ..++++. .|.  
T Consensus       124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~------~g-L--------~~rV~F~~~Da~~  188 (296)
T PLN03075        124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSD------PD-L--------SKRMFFHTADVMD  188 (296)
T ss_pred             CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhc------cC-c--------cCCcEEEECchhh
Confidence            47899999999887655555443  346999999999998876543210      11 1        0223332 111  


Q ss_pred             --cccCCCCEEEEcccC--ChHHHHHHHHHHHhhCCCCeEEEecC
Q 004972          380 --SEFKDVDMVIEAVIE--SVPLKQKIFSELEKACPPHCILATNT  420 (721)
Q Consensus       380 --~~l~~aDlVIeavpe--~~~~k~~v~~~l~~~~~~~~ii~s~t  420 (721)
                        ....+.|+|+..+--  +..-++.+++.+.+.++++.+++.-+
T Consensus       189 ~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        189 VTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             cccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence              235689999988632  23678899999999999998887544

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=94.14  E-value=0.49  Score=49.45  Aligned_cols=87  Identities=14%  Similarity=0.043  Sum_probs=63.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  385 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  385 (721)
                      +++||+|.|.+|+-.|.++..-|..|+.+|.-.-.-..            ...             .+...+-.+.+..|
T Consensus       147 KTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~~~~------------~a~-------------gvq~vsl~Eil~~A  201 (406)
T KOG0068|consen  147 KTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPMALA------------EAF-------------GVQLVSLEEILPKA  201 (406)
T ss_pred             cEEEEeecccchHHHHHHHHhcCceEEeecCCCchHHH------------Hhc-------------cceeeeHHHHHhhc
Confidence            57999999999999999999999999999974322111            011             13333333678899


Q ss_pred             CEEEEcccCChHHHHHHHHHHHhhCCCCeEEE
Q 004972          386 DMVIEAVIESVPLKQKIFSELEKACPPHCILA  417 (721)
Q Consensus       386 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~  417 (721)
                      |+|=.-+|-.++.++-+-.+....++++.-|+
T Consensus       202 DFitlH~PLtP~T~~lin~~tfA~mKkGVriI  233 (406)
T KOG0068|consen  202 DFITLHVPLTPSTEKLLNDETFAKMKKGVRII  233 (406)
T ss_pred             CEEEEccCCCcchhhccCHHHHHHhhCCcEEE
Confidence            99999999777776666566666678887665

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.00  E-value=0.17  Score=57.46  Aligned_cols=47  Identities=21%  Similarity=0.174  Sum_probs=36.9

Q ss_pred             CCCCCCCCCCCCCceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHH
Q 004972          292 VPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  339 (721)
Q Consensus       292 ~~~~~~~~~~~~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~  339 (721)
                      .|+...++.. ..-++|.|||+|..|.++|..|++.|++|+++|.++.
T Consensus         4 ~~~~~~~~~~-~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~   50 (480)
T PRK01438          4 PPGLTSWHSD-WQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD   50 (480)
T ss_pred             ccchhhcccC-cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            3444444432 3356899999999999999999999999999997653

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=93.95  E-value=0.37  Score=48.37  Aligned_cols=127  Identities=20%  Similarity=0.164  Sum_probs=73.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHH-HHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceec-cC--ccc
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LD--YSE  381 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~--~~~  381 (721)
                      ++|.|||+|.++..=+..|.+.|-+|+++..+-. .+..           +.+.+.            ++.. .+  .+.
T Consensus        26 ~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~-----------l~~~~~------------i~~~~r~~~~~d   82 (223)
T PRK05562         26 IKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLD-----------LKKYGN------------LKLIKGNYDKEF   82 (223)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHH-----------HHhCCC------------EEEEeCCCChHH
Confidence            4899999999999999999999999999976532 1111           122222            2221 12  255


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCC--CCCCeeEEecCC
Q 004972          382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA--HVMPLLEIVRTE  459 (721)
Q Consensus       382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~--~~~~lvEiv~~~  459 (721)
                      +.++++||.|+. |.++-+.+.+    .++...+++.+......               ..|+.|.  ..++++--|.+.
T Consensus        83 l~g~~LViaATd-D~~vN~~I~~----~a~~~~~lvn~vd~p~~---------------~dFi~PAiv~rg~l~IaIST~  142 (223)
T PRK05562         83 IKDKHLIVIATD-DEKLNNKIRK----HCDRLYKLYIDCSDYKK---------------GLCIIPYQRSTKNFVFALNTK  142 (223)
T ss_pred             hCCCcEEEECCC-CHHHHHHHHH----HHHHcCCeEEEcCCccc---------------CeEEeeeEEecCCEEEEEECC
Confidence            789999999864 6666555544    33332333332222111               1233443  333454455665


Q ss_pred             CCCHHHHHHHHHHHHH
Q 004972          460 RTSAQVILDLMTVGKI  475 (721)
Q Consensus       460 ~t~~e~~~~~~~l~~~  475 (721)
                      +.+|.....++.-++.
T Consensus       143 G~sP~lar~lR~~ie~  158 (223)
T PRK05562        143 GGSPKTSVFIGEKVKN  158 (223)
T ss_pred             CcCcHHHHHHHHHHHH
Confidence            6677666665555543

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=93.87  E-value=0.14  Score=55.29  Aligned_cols=148  Identities=16%  Similarity=0.129  Sum_probs=77.7

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHC-CCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceec-cCcc-
Q 004972          306 RKVAVIGG-GLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDYS-  380 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~-  380 (721)
                      +||+|||+ |.+|..+...|.+. +++++ +++.+...-+...    ..+..+  .+..          .+.+. .+.+ 
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~----~~~~~l--~~~~----------~~~~~~~~~~~   64 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVS----EVHPHL--RGLV----------DLNLEPIDEEE   64 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChH----HhCccc--cccC----------CceeecCCHHH
Confidence            37999998 99999999999976 66777 5565543211111    000000  0000          01111 1222 


Q ss_pred             ccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHH---HhcccCC----C----CcEEEecCCCCCCC
Q 004972          381 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI---VGEKTSS----Q----DRIIGAHFFSPAHV  449 (721)
Q Consensus       381 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~---l~~~~~~----~----~r~ig~h~~~p~~~  449 (721)
                      .+.++|+||.|+|..  .-.++..++.   ..++.|+++++...+..   .......    +    +-..|+-=+++..+
T Consensus        65 ~~~~~DvVf~alP~~--~s~~~~~~~~---~~G~~VIDlS~~fR~~~~~~y~~~y~~~~~~~~~~~~~~y~lPE~n~~~i  139 (346)
T TIGR01850        65 IAEDADVVFLALPHG--VSAELAPELL---AAGVKVIDLSADFRLKDPEVYEKWYGFEHAGPELLQEAVYGLPELHREEI  139 (346)
T ss_pred             hhcCCCEEEECCCch--HHHHHHHHHH---hCCCEEEeCChhhhcCChhhhHHhcCCCCCChhhhcCceEECCccCHHHh
Confidence            235899999999944  3445545443   35788889888765542   1111111    0    11122222232211


Q ss_pred             CCeeEEecCCCCCH-HHHHHHHHHHHH
Q 004972          450 MPLLEIVRTERTSA-QVILDLMTVGKI  475 (721)
Q Consensus       450 ~~lvEiv~~~~t~~-e~~~~~~~l~~~  475 (721)
                       ....+|..+++.+ ..+-.+.+|.+.
T Consensus       140 -~~~~iianPgC~~t~~~l~L~PL~~~  165 (346)
T TIGR01850       140 -KGARLIANPGCYPTATLLALAPLLKE  165 (346)
T ss_pred             -CCCcEEEcCCcHHHHHHHHHHHHHHc
Confidence             1133676666644 455667788775

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=93.86  E-value=0.17  Score=54.49  Aligned_cols=73  Identities=19%  Similarity=0.173  Sum_probs=48.3

Q ss_pred             CceeEEEEcCCCC-cHHHHHHHHHCCC---ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc
Q 004972          304 GVRKVAVIGGGLM-GSGIATAHILNNI---YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  379 (721)
Q Consensus       304 ~~~kI~VIG~G~m-G~~iA~~la~~G~---~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  379 (721)
                      ++.||||||+|.+ +...+..+...+.   -|-++|+++++++...+.+                      +.-...+++
T Consensus         2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~----------------------~~~~~~~~~   59 (342)
T COG0673           2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEF----------------------GIAKAYTDL   59 (342)
T ss_pred             CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHc----------------------CCCcccCCH
Confidence            3568999999855 4567777777653   4668899999877653211                      111235555


Q ss_pred             c-cc--CCCCEEEEcccCChHH
Q 004972          380 S-EF--KDVDMVIEAVIESVPL  398 (721)
Q Consensus       380 ~-~l--~~aDlVIeavpe~~~~  398 (721)
                      + .+  .+.|+|++|+|.+...
T Consensus        60 ~~ll~~~~iD~V~Iatp~~~H~   81 (342)
T COG0673          60 EELLADPDIDAVYIATPNALHA   81 (342)
T ss_pred             HHHhcCCCCCEEEEcCCChhhH
Confidence            3 33  3479999999966554

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=93.85  E-value=0.17  Score=44.32  Aligned_cols=72  Identities=19%  Similarity=0.383  Sum_probs=49.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceec-cCc-cccC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY-SEFK  383 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~~l~  383 (721)
                      ++|.|||.|.+|..=+..|.+.|.+|+++..+.+..+                +            .+... ..+ +.+.
T Consensus         8 ~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~----------------~------------~i~~~~~~~~~~l~   59 (103)
T PF13241_consen    8 KRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSE----------------G------------LIQLIRREFEEDLD   59 (103)
T ss_dssp             -EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHH----------------T------------SCEEEESS-GGGCT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhh----------------h------------HHHHHhhhHHHHHh
Confidence            6899999999999999999999999999999861111                1            11111 112 5688


Q ss_pred             CCCEEEEcccCChHHHHHHHHHH
Q 004972          384 DVDMVIEAVIESVPLKQKIFSEL  406 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~~~l  406 (721)
                      ++|+||.|.. +..+.+.+.+..
T Consensus        60 ~~~lV~~at~-d~~~n~~i~~~a   81 (103)
T PF13241_consen   60 GADLVFAATD-DPELNEAIYADA   81 (103)
T ss_dssp             TESEEEE-SS--HHHHHHHHHHH
T ss_pred             hheEEEecCC-CHHHHHHHHHHH
Confidence            9999997764 566666655543

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=93.84  E-value=0.085  Score=55.58  Aligned_cols=34  Identities=21%  Similarity=0.419  Sum_probs=31.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCc-eEEEeCCHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIY-VVLKEVNSE  339 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~-V~l~d~~~~  339 (721)
                      +++.|+|+|-.|.+++..|+..|.. |++++|+++
T Consensus       127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~  161 (289)
T PRK12548        127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDD  161 (289)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCch
Confidence            5799999999999999999999986 999999973

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=93.81  E-value=0.15  Score=48.44  Aligned_cols=74  Identities=19%  Similarity=0.251  Sum_probs=48.4

Q ss_pred             eeEEEEcCC-CCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972          306 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  384 (721)
                      ++|.|||-+ ..|.+++..|.+.|..|++.+..-+.++                                     +.++.
T Consensus        37 k~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~-------------------------------------~~~~~   79 (160)
T PF02882_consen   37 KKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQ-------------------------------------EITRR   79 (160)
T ss_dssp             -EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHH-------------------------------------HHHTT
T ss_pred             CEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCccc-------------------------------------ceeee
Confidence            689999986 6899999999999999999886543222                                     23578


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI  423 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~  423 (721)
                      ||+||.|+.-.-.++       ...+++++++++.....
T Consensus        80 ADIVVsa~G~~~~i~-------~~~ik~gavVIDvG~~~  111 (160)
T PF02882_consen   80 ADIVVSAVGKPNLIK-------ADWIKPGAVVIDVGINY  111 (160)
T ss_dssp             SSEEEE-SSSTT-B--------GGGS-TTEEEEE--CEE
T ss_pred             ccEEeeeeccccccc-------cccccCCcEEEecCCcc
Confidence            999999997333322       24578999998765543

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=93.76  E-value=0.16  Score=51.57  Aligned_cols=33  Identities=24%  Similarity=0.288  Sum_probs=29.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  338 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~  338 (721)
                      .||.|||+|..|+.+|..|++.|. +++++|.+.
T Consensus        22 ~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~   55 (228)
T cd00757          22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV   55 (228)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            589999999999999999999998 888998653

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=93.65  E-value=0.081  Score=57.82  Aligned_cols=102  Identities=16%  Similarity=0.200  Sum_probs=61.8

Q ss_pred             CceeEEEEcC-CCCcHHHHHHHHHC-CCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccc
Q 004972          304 GVRKVAVIGG-GLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  381 (721)
Q Consensus       304 ~~~kI~VIG~-G~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  381 (721)
                      ..+||+|+|+ |..|..+...|..+ +++|+.+..+.+.-+...    ..... +..+...         .+. ..+.+.
T Consensus        37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~----~~~~~-l~~~~~~---------~~~-~~~~~~  101 (381)
T PLN02968         37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFG----SVFPH-LITQDLP---------NLV-AVKDAD  101 (381)
T ss_pred             cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCch----hhCcc-ccCcccc---------cee-cCCHHH
Confidence            4569999998 99999999999988 779998887544321111    00000 0001000         000 111233


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH
Q 004972          382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN  426 (721)
Q Consensus       382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~  426 (721)
                      ++++|+||.|+|  ...-.++...+    ..++.|+++++.....
T Consensus       102 ~~~~DvVf~Alp--~~~s~~i~~~~----~~g~~VIDlSs~fRl~  140 (381)
T PLN02968        102 FSDVDAVFCCLP--HGTTQEIIKAL----PKDLKIVDLSADFRLR  140 (381)
T ss_pred             hcCCCEEEEcCC--HHHHHHHHHHH----hCCCEEEEcCchhccC
Confidence            688999999999  44444555543    3568888988875544

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.63  E-value=0.43  Score=54.33  Aligned_cols=35  Identities=17%  Similarity=0.196  Sum_probs=32.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY  340 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~  340 (721)
                      ++|.|+|+|..|.+.+..|...|++|+++|.+++.
T Consensus        13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~   47 (488)
T PRK03369         13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDA   47 (488)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence            68999999999999999999999999999987654

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=93.60  E-value=0.41  Score=50.28  Aligned_cols=92  Identities=17%  Similarity=0.167  Sum_probs=54.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHC-CCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcc---
Q 004972          306 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS---  380 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~---  380 (721)
                      .||+|||+|.+|...+..+.+. +.++. ++|++++.......         .+.|.            -...++++   
T Consensus         5 lrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A---------~~~Gi------------~~~~~~ie~LL   63 (302)
T PRK08300          5 LKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARA---------RRLGV------------ATSAEGIDGLL   63 (302)
T ss_pred             CeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHH---------HHcCC------------CcccCCHHHHH
Confidence            4799999999999988777754 55654 78898864321111         01111            00112221   


Q ss_pred             ---ccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCC
Q 004972          381 ---EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI  423 (721)
Q Consensus       381 ---~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~  423 (721)
                         .+.+.|+|+++.|..  .-.+....   ..+.++.++++++..
T Consensus        64 ~~~~~~dIDiVf~AT~a~--~H~e~a~~---a~eaGk~VID~sPA~  104 (302)
T PRK08300         64 AMPEFDDIDIVFDATSAG--AHVRHAAK---LREAGIRAIDLTPAA  104 (302)
T ss_pred             hCcCCCCCCEEEECCCHH--HHHHHHHH---HHHcCCeEEECCccc
Confidence               236799999999843  33333333   345677788877643

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.57  E-value=0.41  Score=54.22  Aligned_cols=37  Identities=30%  Similarity=0.283  Sum_probs=33.2

Q ss_pred             CceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHH
Q 004972          304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY  340 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~  340 (721)
                      ..+||.|+|+|..|.++|..|.+.|++|+++|++...
T Consensus        14 ~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~   50 (473)
T PRK00141         14 LSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETA   50 (473)
T ss_pred             cCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHH
Confidence            3568999999999999999999999999999987543

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.55  E-value=0.19  Score=52.28  Aligned_cols=72  Identities=15%  Similarity=0.168  Sum_probs=53.0

Q ss_pred             eeEEEEcCC-CCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972          306 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  384 (721)
                      ++|.|||.| ..|.++|..|.+.|..|+++......+.                                     +.+++
T Consensus       158 k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~-------------------------------------~~~~~  200 (285)
T PRK14191        158 KDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLS-------------------------------------FYTQN  200 (285)
T ss_pred             CEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHH-------------------------------------HHHHh
Confidence            589999998 8999999999999999999865332211                                     23578


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  421 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts  421 (721)
                      ||+||-|+.-.--+.       ..++++++++++...
T Consensus       201 ADIvV~AvG~p~~i~-------~~~vk~GavVIDvGi  230 (285)
T PRK14191        201 ADIVCVGVGKPDLIK-------ASMVKKGAVVVDIGI  230 (285)
T ss_pred             CCEEEEecCCCCcCC-------HHHcCCCcEEEEeec
Confidence            999999996322222       235689998886543

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=93.54  E-value=0.26  Score=52.14  Aligned_cols=32  Identities=22%  Similarity=0.474  Sum_probs=29.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCH
Q 004972          307 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  338 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~  338 (721)
                      ||.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus         1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~   33 (312)
T cd01489           1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDT   33 (312)
T ss_pred             CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCC
Confidence            68999999999999999999997 799999754

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=93.54  E-value=0.15  Score=52.75  Aligned_cols=33  Identities=27%  Similarity=0.350  Sum_probs=30.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  338 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~  338 (721)
                      .+|.|+|+|.+|+.+|..|++.|. +++++|.+.
T Consensus        31 s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~   64 (268)
T PRK15116         31 AHICVVGIGGVGSWAAEALARTGIGAITLIDMDD   64 (268)
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence            479999999999999999999994 899999774

>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]

Probab=93.52  E-value=2.4  Score=43.41  Aligned_cols=176  Identities=19%  Similarity=0.214  Sum_probs=97.8

Q ss_pred             CCceeEEEEcC-CCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCcee---c
Q 004972          303 RGVRKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG---V  376 (721)
Q Consensus       303 ~~~~kI~VIG~-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~---~  376 (721)
                      .+.-||+|+|+ |-+|.++...|..+-.  +..+||+....  -...          +-..++.      ...+..   .
T Consensus        26 ~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~--GVaa----------DlSHI~T------~s~V~g~~g~   87 (345)
T KOG1494|consen   26 QRGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTP--GVAA----------DLSHINT------NSSVVGFTGA   87 (345)
T ss_pred             cCcceEEEEecCCccCccHHHHHhcCcccceeeeeecccCC--cccc----------cccccCC------CCceeccCCh
Confidence            34569999997 9999999998876643  78899986321  0000          0011110      011111   1


Q ss_pred             cCc-cccCCCCEEEEcc--cC------------ChHHHHHHHHHHHhhCCCCeEE-EecC--CCCCHH-HHhcc--cCCC
Q 004972          377 LDY-SEFKDVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCIL-ATNT--STIDLN-IVGEK--TSSQ  435 (721)
Q Consensus       377 ~~~-~~l~~aDlVIeav--pe------------~~~~k~~v~~~l~~~~~~~~ii-~s~t--s~~~i~-~l~~~--~~~~  435 (721)
                      ..+ +++++||+||+-.  |-            |..+.+.+...+.+.|+.-.|. +||.  |+.|+. ++...  ...|
T Consensus        88 ~~L~~al~~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsNPVNstVPIaaevlKk~G~ydp  167 (345)
T KOG1494|consen   88 DGLENALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISNPVNSTVPIAAEVLKKAGVYDP  167 (345)
T ss_pred             hHHHHHhcCCCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecCcccccchHHHHHHHHcCCCCc
Confidence            122 5689999999643  32            4446666666777777654433 4544  455553 33322  2356


Q ss_pred             CcEEEecC---------------CCCCC--CC------CeeEEecC-------CCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004972          436 DRIIGAHF---------------FSPAH--VM------PLLEIVRT-------ERTSAQVILDLMTVGKIIKKVPVVVGN  485 (721)
Q Consensus       436 ~r~ig~h~---------------~~p~~--~~------~lvEiv~~-------~~t~~e~~~~~~~l~~~lG~~~v~v~d  485 (721)
                      .|+.|.--               .+|..  -.      ..++|+|-       ...+++.++.+..=.+.-|-.+|-.+.
T Consensus       168 kklfGVTtLDvVRA~tFv~~~~~~~p~~~v~VPVIGGHaG~TIlPLlSQ~~p~~~~~~~~~~~Lt~RiQ~gGtEVV~AKa  247 (345)
T KOG1494|consen  168 KKLFGVTTLDVVRANTFVAEVLNLDPAEDVDVPVIGGHAGITIIPLLSQCKPPFRFTDDEIEALTHRIQNGGTEVVKAKA  247 (345)
T ss_pred             cceeceehhhhhhHHHHHHHHhCCCchhcCCcceecCcCCceEeeecccCCCcccCCHHHHHHHHHHHHhCCceEEEecc
Confidence            67777653               12311  00      11223321       122566677777666777777777788


Q ss_pred             CCchhhhhhhh
Q 004972          486 CTGFAVNRAFF  496 (721)
Q Consensus       486 ~~gfi~nRl~~  496 (721)
                      ..|.....+-+
T Consensus       248 GaGSATLSMAy  258 (345)
T KOG1494|consen  248 GAGSATLSMAY  258 (345)
T ss_pred             CCCchhhhHHH
Confidence            88766655543

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=93.35  E-value=0.2  Score=51.08  Aligned_cols=98  Identities=16%  Similarity=0.091  Sum_probs=54.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCC-----------CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCc-
Q 004972          306 RKVAVIGGGLMGSGIATAHILNN-----------IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKML-  373 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G-----------~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i-  373 (721)
                      .||.|||+|-.|+.++..|++.|           .+++++|.+.=.....    .+.+-....-|+-..+.+.+.+..+ 
T Consensus        12 ~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNL----nRQlf~~~dVG~~Ka~v~~~ri~~~~   87 (244)
T TIGR03736        12 VSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANV----GRQAFYPADVGQNKAIVLVNRLNQAM   87 (244)
T ss_pred             CeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchh----hcccCChhHCCcHHHHHHHHHHHhcc
Confidence            58999999999999999999874           2889999753221111    1111111112222222222222211 


Q ss_pred             ----eecc-C---ccccCCCCEEEEcccCChHHHHHHHHHHHh
Q 004972          374 ----KGVL-D---YSEFKDVDMVIEAVIESVPLKQKIFSELEK  408 (721)
Q Consensus       374 ----~~~~-~---~~~l~~aDlVIeavpe~~~~k~~v~~~l~~  408 (721)
                          .... .   .+.+.++|+||.|+- +...+..+.+....
T Consensus        88 ~~~i~a~~~~~~~~~~~~~~DiVi~avD-n~~aR~~l~~~~~~  129 (244)
T TIGR03736        88 GTDWTAHPERVERSSTLHRPDIVIGCVD-NRAARLAILRAFEG  129 (244)
T ss_pred             CceEEEEEeeeCchhhhcCCCEEEECCC-CHHHHHHHHHHHHH
Confidence                1111 1   123567999999984 67777676666544

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=93.33  E-value=0.2  Score=54.53  Aligned_cols=32  Identities=22%  Similarity=0.335  Sum_probs=29.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN  337 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~  337 (721)
                      .+|.|||+|-+|+.++..|+..|. +++++|.+
T Consensus        42 ~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D   74 (370)
T PRK05600         42 ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD   74 (370)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            479999999999999999999997 89999987

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=93.31  E-value=0.26  Score=45.77  Aligned_cols=73  Identities=19%  Similarity=0.243  Sum_probs=54.0

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  384 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  384 (721)
                      ++|.|+|- ...|.++|..|.+.|..|++++.+-..++                                     +.+++
T Consensus        29 k~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~-------------------------------------~~v~~   71 (140)
T cd05212          29 KKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQ-------------------------------------SKVHD   71 (140)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHH-------------------------------------HHHhh
Confidence            58999997 66799999999999999999986432211                                     34688


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  422 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  422 (721)
                      ||+||.++.-...++       .+.+++++++++....
T Consensus        72 ADIVvsAtg~~~~i~-------~~~ikpGa~Vidvg~~  102 (140)
T cd05212          72 ADVVVVGSPKPEKVP-------TEWIKPGATVINCSPT  102 (140)
T ss_pred             CCEEEEecCCCCccC-------HHHcCCCCEEEEcCCC
Confidence            999999997443332       2357899988865443

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]

Probab=93.31  E-value=1.1  Score=50.12  Aligned_cols=140  Identities=14%  Similarity=0.040  Sum_probs=82.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEE
Q 004972           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (721)
Q Consensus        25 ~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaa  104 (721)
                      .-++..-..+.+..+.+.+.++....+.+..+.|      +.+.+=..     ....+.+.+.+.  ..+... .|.|++
T Consensus       104 gGt~~~~~~~Ki~r~~~~A~~~g~P~i~l~dsgG------ari~~~v~-----~l~g~g~iF~~~--a~~Sg~-IPqIsv  169 (526)
T COG4799         104 GGTLGEMTAKKILRAQELAIENGLPVIGLNDSGG------ARIQEGVP-----SLAGYGRIFYRN--ARASGV-IPQISV  169 (526)
T ss_pred             cccccccccchHHHHHHHHHHcCCCEEEEEcccc------cccccCcc-----ccccchHHHHHH--HHhccC-CCEEEE
Confidence            4677776777777777777765444444444433      33322100     011111111111  124445 999999


Q ss_pred             ECCcccccchHhhhhcCEEEeeCCc-eEeCcccccCccccccccccccCHHHHHHHHHcCCCcCHHH-------HHHcCC
Q 004972          105 VEGLALGGGLELAMGCHARIAAPKT-QLGLPELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSEE-------GWKLGL  176 (721)
Q Consensus       105 v~G~a~GgG~~lalacD~ria~~~a-~~~~pe~~~Gl~P~~~~l~r~~G~~~a~~l~ltg~~~~a~e-------A~~~Gl  176 (721)
                      |.|.|.|||..+...||++|+.+++ ++.+.                 |+...+  ..||+.+++++       +..-|.
T Consensus       170 v~G~c~gGgaY~pal~D~~imv~~~~~mflt-----------------GP~~ik--~vtGe~V~~e~LGGa~vh~~~sGv  230 (526)
T COG4799         170 VMGPCAGGGAYSPALTDFVIMVRDQSYMFLT-----------------GPPVIK--AVTGEEVSAEELGGAQVHARKSGV  230 (526)
T ss_pred             EEecCcccccccccccceEEEEcCCccEEee-----------------CHHHHH--hhcCcEeehhhccchhhhcccccc
Confidence            9999999999999999999999873 33322                 222111  23677776664       234488


Q ss_pred             ccEEcCCchHHHHHHHHHHHHHhc
Q 004972          177 IDAVVTSEELLKVSRLWALDIAAR  200 (721)
Q Consensus       177 v~~vv~~~~l~~~a~~~a~~~a~~  200 (721)
                      +|.+.+.|   ..|.++++++.+.
T Consensus       231 a~~~a~dd---~~Ai~~vr~~lsy  251 (526)
T COG4799         231 ADLLAEDD---EDAIELVRRLLSY  251 (526)
T ss_pred             eeeeecCH---HHHHHHHHHHHHh
Confidence            88887543   4556666666554

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=93.30  E-value=0.063  Score=58.28  Aligned_cols=33  Identities=27%  Similarity=0.313  Sum_probs=30.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  338 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~  338 (721)
                      .||.|||+|-.|+.++..|+..|. +++++|.+.
T Consensus        29 ~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~   62 (355)
T PRK05597         29 AKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT   62 (355)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            589999999999999999999998 799999864

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=93.29  E-value=0.25  Score=50.05  Aligned_cols=33  Identities=30%  Similarity=0.326  Sum_probs=30.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  338 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~  338 (721)
                      .||.|+|+|-+|+.++..|++.|. +++++|.+.
T Consensus        12 ~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~   45 (231)
T cd00755          12 AHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV   45 (231)
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            479999999999999999999997 899999764

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=93.29  E-value=0.25  Score=54.56  Aligned_cols=162  Identities=13%  Similarity=0.053  Sum_probs=81.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCC------ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhc----C--ce
Q 004972          307 KVAVIGGGLMGSGIATAHILNNI------YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALK----M--LK  374 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~~G~------~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~--i~  374 (721)
                      ||.|||+|..|+.++..|+..|.      +++++|.+.=.......   +.+-..-.-|+-..+.+.+.+.    .  +.
T Consensus         1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnR---QfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~   77 (435)
T cd01490           1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNR---QFLFRPHDVGKPKSEVAAAAVKAMNPDLKIT   77 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCc---CccCChhHcCcHHHHHHHHHHHHHCCCCEEE
Confidence            68999999999999999999998      89999975322111100   0000000111111111111111    1  11


Q ss_pred             ecc-C----------ccccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEE-ecCCCCCHHHHhcccCCCCcEEEec
Q 004972          375 GVL-D----------YSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA-TNTSTIDLNIVGEKTSSQDRIIGAH  442 (721)
Q Consensus       375 ~~~-~----------~~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~-s~ts~~~i~~l~~~~~~~~r~ig~h  442 (721)
                      ... .          .+-+++.|+||.|+- +.+....+-+....+   +..++ +.+.+.. ....-..+.-...-...
T Consensus        78 a~~~~v~~~~~~~~~~~f~~~~DvVi~alD-n~~aR~~vn~~C~~~---~iPli~~gt~G~~-G~v~v~iP~~te~y~~~  152 (435)
T cd01490          78 ALQNRVGPETEHIFNDEFWEKLDGVANALD-NVDARMYVDRRCVYY---RKPLLESGTLGTK-GNTQVVIPHLTESYSSS  152 (435)
T ss_pred             EEecccChhhhhhhhHHHhcCCCEEEECCC-CHHHHHHHHHHHHHh---CCCEEEEecccce-eEEEEEeCCCCCCccCC
Confidence            110 0          122577999999974 455443333322222   23333 3333221 11111111111111222


Q ss_pred             CCCCCCCCCeeEEecCCCCCHHHHHHHHHHHHHc
Q 004972          443 FFSPAHVMPLLEIVRTERTSAQVILDLMTVGKII  476 (721)
Q Consensus       443 ~~~p~~~~~lvEiv~~~~t~~e~~~~~~~l~~~l  476 (721)
                      ...|....|.+++-.-+...+-.+++++.+++.+
T Consensus       153 ~~p~~~~~P~Ctl~~~P~~~eHcI~wA~~~F~~l  186 (435)
T cd01490         153 RDPPEKSIPLCTLKNFPNAIEHTIQWARDEFEGL  186 (435)
T ss_pred             CCCCCCCCCCccccCCCCCchHHHHHHHHHHHHH
Confidence            2233345677788888888899999999998875

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=93.24  E-value=0.19  Score=55.17  Aligned_cols=32  Identities=22%  Similarity=0.287  Sum_probs=30.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN  337 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~  337 (721)
                      .||.|||+|-.|+.++..|++.|. +++++|.+
T Consensus       136 ~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        136 ARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            479999999999999999999998 79999987

>PRK08223 hypothetical protein; Validated

Probab=93.22  E-value=0.24  Score=51.57  Aligned_cols=33  Identities=18%  Similarity=0.163  Sum_probs=30.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  338 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~  338 (721)
                      .+|.|||+|-+|+.++..|++.|. +++++|.+.
T Consensus        28 s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~   61 (287)
T PRK08223         28 SRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV   61 (287)
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            479999999999999999999997 789999764

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=93.22  E-value=0.16  Score=52.15  Aligned_cols=32  Identities=19%  Similarity=0.312  Sum_probs=29.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN  337 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~  337 (721)
                      .||.|||+|..|+.++..|+..|. +++++|.+
T Consensus        33 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   65 (245)
T PRK05690         33 ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD   65 (245)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            589999999999999999999997 78999876

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=93.20  E-value=1.5  Score=43.76  Aligned_cols=130  Identities=23%  Similarity=0.228  Sum_probs=78.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCH-HHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS-EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  384 (721)
                      ++|.|||.|..|.-=+..|++.|-+|+++..+. +.+..           +...+.+..         +.-.-+.+.+.+
T Consensus        13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~-----------~~~~~~i~~---------~~~~~~~~~~~~   72 (210)
T COG1648          13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKA-----------LIEEGKIKW---------IEREFDAEDLDD   72 (210)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHH-----------HHHhcCcch---------hhcccChhhhcC
Confidence            589999999999999999999999999999876 22222           233332221         111222355677


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCC--CCCCeeEEecCCCCC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA--HVMPLLEIVRTERTS  462 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~--~~~~lvEiv~~~~t~  462 (721)
                      +++||.|+. |..+.+.+++...+.    .+++ |...-+           +.   .+|+.|.  ...++.--|.+.+.+
T Consensus        73 ~~lviaAt~-d~~ln~~i~~~a~~~----~i~v-Nv~D~p-----------~~---~~f~~Pa~~~r~~l~iaIsT~G~s  132 (210)
T COG1648          73 AFLVIAATD-DEELNERIAKAARER----RILV-NVVDDP-----------EL---CDFIFPAIVDRGPLQIAISTGGKS  132 (210)
T ss_pred             ceEEEEeCC-CHHHHHHHHHHHHHh----CCce-eccCCc-----------cc---CceecceeeccCCeEEEEECCCCC
Confidence            999999886 667766666554433    3333 332211           11   2344443  334555556666667


Q ss_pred             HHHHHHHHHHHHH
Q 004972          463 AQVILDLMTVGKI  475 (721)
Q Consensus       463 ~e~~~~~~~l~~~  475 (721)
                      |-....++.-.+.
T Consensus       133 P~la~~ir~~Ie~  145 (210)
T COG1648         133 PVLARLLREKIEA  145 (210)
T ss_pred             hHHHHHHHHHHHH
Confidence            7766666665554

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=93.16  E-value=0.35  Score=47.12  Aligned_cols=88  Identities=14%  Similarity=0.118  Sum_probs=57.3

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceec--cC----
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV--LD----  378 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~--~~----  378 (721)
                      ++|.|||- ...|.++|..|.+.|..|+++|.+--..-.             ..+.+          +-+.+  .+    
T Consensus        63 K~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~-------------~~~~~----------~hs~t~~~~~~~~  119 (197)
T cd01079          63 KTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFT-------------RGESI----------RHEKHHVTDEEAM  119 (197)
T ss_pred             CEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccc-------------ccccc----------ccccccccchhhH
Confidence            68999997 566999999999999999999865433110             00000          00001  12    


Q ss_pred             c-cccCCCCEEEEcccCChH-HHHHHHHHHHhhCCCCeEEEecCCCC
Q 004972          379 Y-SEFKDVDMVIEAVIESVP-LKQKIFSELEKACPPHCILATNTSTI  423 (721)
Q Consensus       379 ~-~~l~~aDlVIeavpe~~~-~k~~v~~~l~~~~~~~~ii~s~ts~~  423 (721)
                      + +.+++||+||.|++-.-- ++.       +.+++++++++.....
T Consensus       120 l~~~~~~ADIVIsAvG~~~~~i~~-------d~ik~GavVIDVGi~~  159 (197)
T cd01079         120 TLDCLSQSDVVITGVPSPNYKVPT-------ELLKDGAICINFASIK  159 (197)
T ss_pred             HHHHhhhCCEEEEccCCCCCccCH-------HHcCCCcEEEEcCCCc
Confidence            2 457999999999973322 232       3567999998766543

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.04  E-value=0.31  Score=50.50  Aligned_cols=73  Identities=15%  Similarity=0.236  Sum_probs=54.7

Q ss_pred             eeEEEEcCC-CCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972          306 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  384 (721)
                      ++|.|||-+ ..|.++|..+...|..|+.+..+...+.                                     +.+++
T Consensus       153 k~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~-------------------------------------~~~~~  195 (279)
T PRK14178        153 KRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLK-------------------------------------AELRQ  195 (279)
T ss_pred             CEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHH-------------------------------------HHHhh
Confidence            589999998 8899999999999999999987654322                                     23578


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  422 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  422 (721)
                      ||+||-|++-..-++.       .++++++++++....
T Consensus       196 ADIvI~Avgk~~lv~~-------~~vk~GavVIDVgi~  226 (279)
T PRK14178        196 ADILVSAAGKAGFITP-------DMVKPGATVIDVGIN  226 (279)
T ss_pred             CCEEEECCCcccccCH-------HHcCCCcEEEEeecc
Confidence            9999999972222222       236899999875544

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=92.99  E-value=0.17  Score=53.14  Aligned_cols=34  Identities=15%  Similarity=0.319  Sum_probs=31.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSE  339 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~  339 (721)
                      +++.|||+|-.+.+++..++..|. +|++++|+++
T Consensus       125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~  159 (288)
T PRK12749        125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE  159 (288)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence            479999999999999999999887 8999999965

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=92.96  E-value=0.084  Score=58.62  Aligned_cols=33  Identities=21%  Similarity=0.251  Sum_probs=31.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHH
Q 004972          307 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  339 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~  339 (721)
                      +|+|||+|.+|.++|..|++.|++|+++|++..
T Consensus         2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~   34 (416)
T PRK00711          2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG   34 (416)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence            799999999999999999999999999999754

>cd05295 MDH_like Malate dehydrogenase-like

Probab=92.96  E-value=0.3  Score=54.13  Aligned_cols=103  Identities=15%  Similarity=0.054  Sum_probs=64.4

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHC---CC----ceEEEeC--CHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCcee
Q 004972          306 RKVAVIGG-GLMGSGIATAHILN---NI----YVVLKEV--NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG  375 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~---G~----~V~l~d~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  375 (721)
                      -+|+|-|+ |.+|-++...+++.   |.    .++++|+  +.+.++...-.+.+....+              +..+..
T Consensus       124 ~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pl--------------l~~v~i  189 (452)
T cd05295         124 LQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPL--------------LRGISV  189 (452)
T ss_pred             eEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhh--------------cCCcEE
Confidence            37999997 99999999999874   42    5789999  5666554433333221111              122333


Q ss_pred             -ccCccccCCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCC-CeEEEecCCC
Q 004972          376 -VLDYSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPP-HCILATNTST  422 (721)
Q Consensus       376 -~~~~~~l~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~-~~ii~s~ts~  422 (721)
                       +++++++++||+||.+.--              +..+.+.+.+.|.++.++ ..|++..|..
T Consensus       190 ~~~~~ea~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNP  252 (452)
T cd05295         190 TTDLDVAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTF  252 (452)
T ss_pred             EECCHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCc
Confidence             4456899999999987621              334555666667777762 4455544443

These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=92.94  E-value=0.23  Score=51.66  Aligned_cols=39  Identities=21%  Similarity=0.021  Sum_probs=35.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKG  344 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~  344 (721)
                      +++.|+|+|-.+.+++..|++.|. +|++++|++++.+..
T Consensus       123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~l  162 (272)
T PRK12550        123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKAL  162 (272)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence            479999999999999999999997 599999999887664

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=92.93  E-value=1.7  Score=45.24  Aligned_cols=87  Identities=16%  Similarity=0.184  Sum_probs=55.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHH-hhcCceeccCccccC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANN-ALKMLKGVLDYSEFK  383 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~i~~~~~~~~l~  383 (721)
                      .+++|.|+|.+|.+.++....+|- +++.+|+|+++.+.+++-        -...-+.+.+... ..+.|.--++    .
T Consensus       194 stvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f--------GaTe~iNp~d~~~~i~evi~EmTd----g  261 (375)
T KOG0022|consen  194 STVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF--------GATEFINPKDLKKPIQEVIIEMTD----G  261 (375)
T ss_pred             CEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc--------CcceecChhhccccHHHHHHHHhc----C
Confidence            479999999999999999988885 899999999998887531        0111111111100 0011111111    5


Q ss_pred             CCCEEEEcccCChHHHHHHHHH
Q 004972          384 DVDMVIEAVIESVPLKQKIFSE  405 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~~~  405 (721)
                      +.|+-+||+- ++++.++-+..
T Consensus       262 GvDysfEc~G-~~~~m~~al~s  282 (375)
T KOG0022|consen  262 GVDYSFECIG-NVSTMRAALES  282 (375)
T ss_pred             CceEEEEecC-CHHHHHHHHHH
Confidence            7899999986 56655555444

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=92.91  E-value=0.2  Score=54.02  Aligned_cols=143  Identities=18%  Similarity=0.161  Sum_probs=79.4

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCCce---EEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceecc-Ccc
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNIYV---VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-DYS  380 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~~V---~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~  380 (721)
                      +||+|+|+ |..|..+...|.+.||++   ....++.+.-+...          . .+           ..+...+ +..
T Consensus         2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~----------~-~g-----------~~i~v~d~~~~   59 (334)
T PRK14874          2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELS----------F-KG-----------KELKVEDLTTF   59 (334)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeee----------e-CC-----------ceeEEeeCCHH
Confidence            58999997 999999999999988864   55654433211110          0 01           0122211 113


Q ss_pred             ccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCe--eEEecC
Q 004972          381 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPL--LEIVRT  458 (721)
Q Consensus       381 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~l--vEiv~~  458 (721)
                      .+.++|+||.|+|  ...-+++..++.   ..++.|+++++...... .    .|   .++.-.|+..+...  -.++..
T Consensus        60 ~~~~vDvVf~A~g--~g~s~~~~~~~~---~~G~~VIDlS~~~R~~~-~----~p---~~lpevn~~~i~~~~~~~iVan  126 (334)
T PRK14874         60 DFSGVDIALFSAG--GSVSKKYAPKAA---AAGAVVIDNSSAFRMDP-D----VP---LVVPEVNPEALAEHRKKGIIAN  126 (334)
T ss_pred             HHcCCCEEEECCC--hHHHHHHHHHHH---hCCCEEEECCchhhcCC-C----CC---eEcCCcCHHHHhhhhcCCeEEC
Confidence            3578999999998  555556655543   45678888887654432 0    11   22222332222111  025665


Q ss_pred             CCCCHH-HHHHHHHHHHHcCCeeEEE
Q 004972          459 ERTSAQ-VILDLMTVGKIIKKVPVVV  483 (721)
Q Consensus       459 ~~t~~e-~~~~~~~l~~~lG~~~v~v  483 (721)
                      +.+... ..-.+.++.+..+-..+++
T Consensus       127 p~C~~t~~~l~l~pL~~~~~i~~i~v  152 (334)
T PRK14874        127 PNCSTIQMVVALKPLHDAAGIKRVVV  152 (334)
T ss_pred             ccHHHHHHHHHHHHHHHhcCceEEEE
Confidence            555443 4455666766666544444

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=92.85  E-value=0.31  Score=50.68  Aligned_cols=71  Identities=15%  Similarity=0.179  Sum_probs=52.8

Q ss_pred             eeEEEEcCCC-CcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972          306 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  384 (721)
                      ++|.|||-|. .|.++|..|.+.|..|+++...-..++                                     +.+++
T Consensus       160 k~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~~l~-------------------------------------~~~~~  202 (285)
T PRK10792        160 LNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKNLR-------------------------------------HHVRN  202 (285)
T ss_pred             CEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCCCHH-------------------------------------HHHhh
Confidence            5899999977 899999999999999999986422111                                     34688


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  420 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t  420 (721)
                      ||+||-++.-.--     +.  ..++++++++++..
T Consensus       203 ADIvi~avG~p~~-----v~--~~~vk~gavVIDvG  231 (285)
T PRK10792        203 ADLLVVAVGKPGF-----IP--GEWIKPGAIVIDVG  231 (285)
T ss_pred             CCEEEEcCCCccc-----cc--HHHcCCCcEEEEcc
Confidence            9999999941122     22  15678999998755

>PRK08328 hypothetical protein; Provisional

Probab=92.84  E-value=0.3  Score=49.65  Aligned_cols=34  Identities=29%  Similarity=0.380  Sum_probs=30.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSE  339 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~  339 (721)
                      .||.|||+|-.|+.++..|++.|. +++++|.+.-
T Consensus        28 ~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~v   62 (231)
T PRK08328         28 AKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTP   62 (231)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence            479999999999999999999997 7999997643

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=92.84  E-value=0.2  Score=47.98  Aligned_cols=80  Identities=19%  Similarity=0.252  Sum_probs=51.2

Q ss_pred             CceeEEEEcCCCCcHHHHHH-HH-HCCCce-EEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcc
Q 004972          304 GVRKVAVIGGGLMGSGIATA-HI-LNNIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS  380 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~~-la-~~G~~V-~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  380 (721)
                      ++.+|.|||+|++|.+++.. +. +.|+++ -++|.+++.+-.-             -+.+.          +.-.++++
T Consensus        83 ~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~-------------~~~v~----------V~~~d~le  139 (211)
T COG2344          83 KTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTK-------------IGDVP----------VYDLDDLE  139 (211)
T ss_pred             cceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcc-------------cCCee----------eechHHHH
Confidence            46799999999999999963 33 567765 5899999864321             01011          11112221


Q ss_pred             -cc--CCCCEEEEcccCChHHHHHHHHHHHh
Q 004972          381 -EF--KDVDMVIEAVIESVPLKQKIFSELEK  408 (721)
Q Consensus       381 -~l--~~aDlVIeavpe~~~~k~~v~~~l~~  408 (721)
                       -+  .+.|+.|+|||  ....+++...|.+
T Consensus       140 ~~v~~~dv~iaiLtVP--a~~AQ~vad~Lv~  168 (211)
T COG2344         140 KFVKKNDVEIAILTVP--AEHAQEVADRLVK  168 (211)
T ss_pred             HHHHhcCccEEEEEcc--HHHHHHHHHHHHH
Confidence             12  27899999999  6666666666543

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=92.78  E-value=0.26  Score=49.45  Aligned_cols=33  Identities=24%  Similarity=0.253  Sum_probs=29.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  338 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~  338 (721)
                      ++|+|.|.|++|+.+|..|.+.|. .|.+.|.+.
T Consensus        24 ~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g   57 (217)
T cd05211          24 LTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG   57 (217)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence            589999999999999999999987 566788877

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.65  E-value=1.1  Score=50.25  Aligned_cols=34  Identities=26%  Similarity=0.337  Sum_probs=31.9

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCH
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  338 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~  338 (721)
                      -++|.|+|+|.+|.++|..|++.|++|+++|++.
T Consensus         5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            3689999999999999999999999999999985

>PRK05868 hypothetical protein; Validated

Probab=92.60  E-value=0.091  Score=57.57  Aligned_cols=36  Identities=19%  Similarity=0.188  Sum_probs=33.2

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHH
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY  340 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~  340 (721)
                      |++|.|||+|..|.+.|..|++.|++|+++|+.++.
T Consensus         1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~   36 (372)
T PRK05868          1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL   36 (372)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence            568999999999999999999999999999988653

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=92.54  E-value=0.27  Score=50.29  Aligned_cols=34  Identities=15%  Similarity=0.292  Sum_probs=30.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSE  339 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~  339 (721)
                      .||.|+|+|-+|+.+|..|++.|. +++++|.+.-
T Consensus        25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v   59 (240)
T TIGR02355        25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV   59 (240)
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence            589999999999999999999997 7899997643

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=92.53  E-value=0.048  Score=56.82  Aligned_cols=31  Identities=16%  Similarity=0.363  Sum_probs=28.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCC
Q 004972          307 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVN  337 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~  337 (721)
                      ||.|||+|..|+.+|..|+..|. +++++|.+
T Consensus         1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D   32 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSG   32 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence            68999999999999999999997 78888854

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=92.50  E-value=0.37  Score=49.58  Aligned_cols=73  Identities=21%  Similarity=0.227  Sum_probs=53.3

Q ss_pred             eeEEEEcCCC-CcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972          306 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  384 (721)
                      +++.|||.+. +|.+|+..|.+.++.|+++...-..+.                                     +.+++
T Consensus       157 k~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T~~l~-------------------------------------~~~k~  199 (283)
T COG0190         157 KNVVVVGRSNIVGKPLALLLLNANATVTVCHSRTKDLA-------------------------------------SITKN  199 (283)
T ss_pred             CEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCCCCHH-------------------------------------HHhhh
Confidence            5899999865 599999999999999999886432211                                     33578


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  422 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  422 (721)
                      ||+||.|+--.--+     .  .+.+++++++++....
T Consensus       200 ADIvv~AvG~p~~i-----~--~d~vk~gavVIDVGin  230 (283)
T COG0190         200 ADIVVVAVGKPHFI-----K--ADMVKPGAVVIDVGIN  230 (283)
T ss_pred             CCEEEEecCCcccc-----c--cccccCCCEEEecCCc
Confidence            99999998522222     2  4567889998875543

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=92.49  E-value=0.22  Score=50.43  Aligned_cols=31  Identities=29%  Similarity=0.248  Sum_probs=28.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceE-EEeC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVV-LKEV  336 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~-l~d~  336 (721)
                      ++|+|.|.|.+|..+|..|.+.|..|+ +.|.
T Consensus        32 ~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~   63 (227)
T cd01076          32 ARVAIQGFGNVGSHAARFLHEAGAKVVAVSDS   63 (227)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            689999999999999999999999988 7776

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=92.44  E-value=0.43  Score=50.36  Aligned_cols=88  Identities=23%  Similarity=0.251  Sum_probs=61.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  385 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  385 (721)
                      +++.|.|-|..|.++|..+.-.|.+|++++++|-.+-++.                        ++.....+-.+++..+
T Consensus       210 K~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~------------------------MdGf~V~~m~~Aa~~g  265 (420)
T COG0499         210 KNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAA------------------------MDGFRVMTMEEAAKTG  265 (420)
T ss_pred             ceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHh------------------------hcCcEEEEhHHhhhcC
Confidence            5688999999999999999999999999999997644331                        2233333333667889


Q ss_pred             CEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972          386 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  422 (721)
Q Consensus       386 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  422 (721)
                      |++|.|.-..--+..+-+    ..+++++|++ |...
T Consensus       266 DifiT~TGnkdVi~~eh~----~~MkDgaIl~-N~GH  297 (420)
T COG0499         266 DIFVTATGNKDVIRKEHF----EKMKDGAILA-NAGH  297 (420)
T ss_pred             CEEEEccCCcCccCHHHH----HhccCCeEEe-cccc
Confidence            999998864333333332    3357777775 4543

>CHL00194 ycf39 Ycf39; Provisional

Probab=92.40  E-value=0.22  Score=53.24  Aligned_cols=36  Identities=22%  Similarity=0.190  Sum_probs=32.4

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHH
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYL  341 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~  341 (721)
                      +||.|.|+ |.+|+.++..|.+.|++|++.+|+.+..
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~   37 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKA   37 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHh
Confidence            37999996 9999999999999999999999987653

>PRK07236 hypothetical protein; Provisional

Probab=92.38  E-value=0.13  Score=56.64  Aligned_cols=37  Identities=24%  Similarity=0.075  Sum_probs=33.7

Q ss_pred             CCceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHH
Q 004972          303 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  339 (721)
Q Consensus       303 ~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~  339 (721)
                      |+..+|.|||+|.-|...|..|++.|++|+++++.+.
T Consensus         4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (386)
T PRK07236          4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT   40 (386)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            4457899999999999999999999999999998864

>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]

Probab=92.35  E-value=0.53  Score=48.51  Aligned_cols=109  Identities=17%  Similarity=0.207  Sum_probs=64.5

Q ss_pred             HHHHhhhhcCCCCCCCCCCCCCCceeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCC
Q 004972          282 VFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGK  360 (721)
Q Consensus       282 aF~~~r~~~~~~~~~~~~~~~~~~~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~  360 (721)
                      +|+......|..+           +-|.|||+|-+|+-.+..|++.|. .+.++|.++-.+.....+.-..+   ..-|.
T Consensus        62 aFfGee~m~kl~~-----------syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl---~DVG~  127 (430)
T KOG2018|consen   62 AFFGEEGMEKLTN-----------SYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATL---ADVGT  127 (430)
T ss_pred             hhhhhhHHHHhcC-----------cEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhH---hhcCC
Confidence            5776666555331           359999999999999999999998 68899988766665433211111   11111


Q ss_pred             CCHHHHHHhhcC------------ceeccCccc--cCCCCEEEEcccCChHHHHHHHHH
Q 004972          361 LTQDKANNALKM------------LKGVLDYSE--FKDVDMVIEAVIESVPLKQKIFSE  405 (721)
Q Consensus       361 ~~~~~~~~~~~~------------i~~~~~~~~--l~~aDlVIeavpe~~~~k~~v~~~  405 (721)
                      -........+..            +...++.+.  ..+-|+||+|+- +.+.|..+++-
T Consensus       128 PK~~clkkh~skiaPw~eIdar~~l~~~~s~edll~gnPdFvvDciD-NidtKVdLL~y  185 (430)
T KOG2018|consen  128 PKVMCLKKHFSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFVVDCID-NIDTKVDLLEY  185 (430)
T ss_pred             chHHHHHHHHHhhCccceecHHHhhcCCCchhhhhcCCCCeEeEhhh-hhhhhhHHHHH
Confidence            001111111111            111222232  367899999985 78888887654

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=92.33  E-value=0.36  Score=50.19  Aligned_cols=72  Identities=15%  Similarity=0.183  Sum_probs=53.1

Q ss_pred             eeEEEEcCCC-CcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972          306 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  383 (721)
Q Consensus       306 ~kI~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  383 (721)
                      ++|.|||-+. .|.++|..|.+.|..|++++..-.                                      ++ +.++
T Consensus       165 k~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~--------------------------------------~l~~~~~  206 (287)
T PRK14176        165 KNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTD--------------------------------------DLKKYTL  206 (287)
T ss_pred             CEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCC--------------------------------------CHHHHHh
Confidence            5899999987 899999999999999999984322                                      22 3367


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972          384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  422 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  422 (721)
                      +||+||.|+.-.-     ++.  ...+++++++++..+.
T Consensus       207 ~ADIvv~AvG~p~-----~i~--~~~vk~gavVIDvGin  238 (287)
T PRK14176        207 DADILVVATGVKH-----LIK--ADMVKEGAVIFDVGIT  238 (287)
T ss_pred             hCCEEEEccCCcc-----ccC--HHHcCCCcEEEEeccc
Confidence            8999998774212     221  2367899999876554

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=92.28  E-value=0.39  Score=47.49  Aligned_cols=32  Identities=22%  Similarity=0.351  Sum_probs=29.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN  337 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~  337 (721)
                      .||.|||+|.+|+.++..|+..|. +++++|.+
T Consensus        22 s~VlIiG~gglG~evak~La~~GVg~i~lvD~d   54 (197)
T cd01492          22 ARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR   54 (197)
T ss_pred             CcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            589999999999999999999998 69999976

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=92.25  E-value=0.12  Score=41.57  Aligned_cols=30  Identities=27%  Similarity=0.290  Sum_probs=27.2

Q ss_pred             EEcCCCCcHHHHHHHHHCCCceEEEeCCHH
Q 004972          310 VIGGGLMGSGIATAHILNNIYVVLKEVNSE  339 (721)
Q Consensus       310 VIG~G~mG~~iA~~la~~G~~V~l~d~~~~  339 (721)
                      |||+|.-|.+.|..|++.|++|+++|++..
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~   30 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR   30 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence            899999999999999999999999998754

...

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=92.01  E-value=1.3  Score=47.56  Aligned_cols=138  Identities=15%  Similarity=0.161  Sum_probs=76.0

Q ss_pred             ceeEEEEcC-CCCcHHHHHHHHHCCCceE---EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceecc-Cc
Q 004972          305 VRKVAVIGG-GLMGSGIATAHILNNIYVV---LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-DY  379 (721)
Q Consensus       305 ~~kI~VIG~-G~mG~~iA~~la~~G~~V~---l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~  379 (721)
                      |.||+|+|+ |+.|.-+...|.+++|++.   .+. +.+...+-   +.       -.+           ..+.+.. +.
T Consensus         4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~-s~~~aG~~---l~-------~~~-----------~~l~~~~~~~   61 (336)
T PRK05671          4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLA-SSESAGHS---VP-------FAG-----------KNLRVREVDS   61 (336)
T ss_pred             CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEE-CcccCCCe---ec-------cCC-----------cceEEeeCCh
Confidence            468999997 9999999999998877433   332 22221110   00       000           0122211 11


Q ss_pred             cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCC--eeEEec
Q 004972          380 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMP--LLEIVR  457 (721)
Q Consensus       380 ~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~--lvEiv~  457 (721)
                      +.++++|+|+.|+|.  ..-..+..++.   ..++.++++++.....      ..|   .++-=.|+..+..  --.+|.
T Consensus        62 ~~~~~vD~vFla~p~--~~s~~~v~~~~---~~G~~VIDlS~~fR~~------~~p---l~lPEvn~~~i~~~~~~~iIA  127 (336)
T PRK05671         62 FDFSQVQLAFFAAGA--AVSRSFAEKAR---AAGCSVIDLSGALPSA------QAP---NVVPEVNAERLASLAAPFLVS  127 (336)
T ss_pred             HHhcCCCEEEEcCCH--HHHHHHHHHHH---HCCCeEEECchhhcCC------CCC---EEecccCHHHHccccCCCEEE
Confidence            235889999999993  44444545443   3578888999876653      111   2222223222111  012666


Q ss_pred             CCCCCH-HHHHHHHHHHHHcCC
Q 004972          458 TERTSA-QVILDLMTVGKIIKK  478 (721)
Q Consensus       458 ~~~t~~-e~~~~~~~l~~~lG~  478 (721)
                      .+++.+ ..+-.+.+|.+.++-
T Consensus       128 nPgC~~t~~~laL~PL~~~~~~  149 (336)
T PRK05671        128 SPSASAVALAVALAPLKGLLDI  149 (336)
T ss_pred             CCCcHHHHHHHHHHHHHHhcCC
Confidence            666544 445567777765653

>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]

Probab=92.00  E-value=3.7  Score=40.30  Aligned_cols=160  Identities=15%  Similarity=0.171  Sum_probs=89.3

Q ss_pred             ceec-cCccccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccC---C-CCcEEEecCCCCC
Q 004972          373 LKGV-LDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTS---S-QDRIIGAHFFSPA  447 (721)
Q Consensus       373 i~~~-~~~~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~---~-~~r~ig~h~~~p~  447 (721)
                      +..+ +|.++++++|+||.=.|. -.....+++++..-+++++|+ +++.+++.+.....+.   + .-++-..||-.-|
T Consensus       127 ~~vttddreavedad~iitwlpk-g~~qpdiikkfiddipegaiv-thactipttkf~kifed~gredlnvtsyhpg~vp  204 (343)
T COG4074         127 IVVTTDDREAVEDADMIITWLPK-GGVQPDIIKKFIDDIPEGAIV-THACTIPTTKFKKIFEDMGREDLNVTSYHPGTVP  204 (343)
T ss_pred             eEEecCcHhhhcCCCeEEEeccC-CCCCccHHHHHHhcCCCCceE-eeecccchHHHHHHHHHhCccccceeccCCCCCc
Confidence            4444 455899999999998873 223336677777778999877 6788888876555443   2 2356667775544


Q ss_pred             CCCCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHHHhcCCCc
Q 004972          448 HVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIRSFGLPI  526 (721)
Q Consensus       448 ~~~~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~gfi~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~~~~G~p~  526 (721)
                      ..-.-|-|.. ...++|+++.+-++-+........+   |+++...+ +-+......++-.|+ +-  -|.+..-+|-|.
T Consensus       205 emkgqvyiae-gyaseeavn~lyelg~karg~afk~---pa~llgpv-cdmcsavtaivyagll~y--rdavt~ilgapa  277 (343)
T COG4074         205 EMKGQVYIAE-GYASEEAVNALYELGEKARGLAFKV---PAYLLGPV-CDMCSAVTAIVYAGLLTY--RDAVTDILGAPA  277 (343)
T ss_pred             cccCcEEEec-ccccHHHHHHHHHHHHHhhcccccC---cHHhhchH-HHHHHHHHHHHHHHHHHH--HHHHHHHhcCch
Confidence            3333333433 4568999999988887654333322   33332222 122222233333333 11  122334466666


Q ss_pred             cHHHHHHhhchHHHH
Q 004972          527 GPFQLLDLAGYGVAA  541 (721)
Q Consensus       527 Gpf~~~D~~Gld~~~  541 (721)
                      +--+.|-.-.|.-+.
T Consensus       278 dfaqmma~eal~qi~  292 (343)
T COG4074         278 DFAQMMAVEALQQIA  292 (343)
T ss_pred             hHHHHHHHHHHHHHH
Confidence            655554444444333

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=91.97  E-value=0.52  Score=49.26  Aligned_cols=90  Identities=18%  Similarity=0.194  Sum_probs=52.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHH-CCCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccc-c-
Q 004972          307 KVAVIGGGLMGSGIATAHIL-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE-F-  382 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~-~G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-l-  382 (721)
                      ||+|||+|.||...+..+.+ .+.++. ++|++++.......         .+.|            .-...++++. + 
T Consensus         3 rVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A---------~~~G------------i~~~~~~~e~ll~   61 (285)
T TIGR03215         3 KVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARA---------RELG------------VKTSAEGVDGLLA   61 (285)
T ss_pred             EEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHH---------HHCC------------CCEEECCHHHHhc
Confidence            79999999999998777765 456665 68888875321110         0111            1112233322 2 


Q ss_pred             -CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972          383 -KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  422 (721)
Q Consensus       383 -~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  422 (721)
                       .+.|+|++|.|.....  +...   ..+..++.++++++.
T Consensus        62 ~~dIDaV~iaTp~~~H~--e~a~---~al~aGk~VIdekPa   97 (285)
T TIGR03215        62 NPDIDIVFDATSAKAHA--RHAR---LLAELGKIVIDLTPA   97 (285)
T ss_pred             CCCCCEEEECCCcHHHH--HHHH---HHHHcCCEEEECCcc
Confidence             4689999999955442  2222   233456666665553

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PRK07877 hypothetical protein; Provisional

Probab=91.91  E-value=0.19  Score=59.19  Aligned_cols=31  Identities=19%  Similarity=0.370  Sum_probs=28.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC--ceEEEeCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVN  337 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~  337 (721)
                      .||+|||+| .|+.+|..|++.|.  +++++|.+
T Consensus       108 ~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D  140 (722)
T PRK07877        108 LRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFD  140 (722)
T ss_pred             CCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCC
Confidence            479999999 89999999999995  89999975

>PLN00016 RNA-binding protein; Provisional

Probab=91.82  E-value=0.35  Score=53.01  Aligned_cols=37  Identities=24%  Similarity=0.293  Sum_probs=33.1

Q ss_pred             CceeEEEE----cC-CCCcHHHHHHHHHCCCceEEEeCCHHH
Q 004972          304 GVRKVAVI----GG-GLMGSGIATAHILNNIYVVLKEVNSEY  340 (721)
Q Consensus       304 ~~~kI~VI----G~-G~mG~~iA~~la~~G~~V~l~d~~~~~  340 (721)
                      .++||.|+    |+ |.+|+.++..|.+.||+|++++++++.
T Consensus        51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~   92 (378)
T PLN00016         51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEP   92 (378)
T ss_pred             ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcc
Confidence            34689999    75 999999999999999999999998765

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=91.78  E-value=0.45  Score=50.10  Aligned_cols=125  Identities=12%  Similarity=0.059  Sum_probs=70.0

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  384 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  384 (721)
                      .||+|+|+ |+.|.-+.+.|+.+- +|-+.....+.-                   +            ...+..+.+++
T Consensus         2 ~~v~IvGasGy~G~el~rlL~~HP-~~el~~l~s~~~-------------------~------------~~~~~~~~~~~   49 (310)
T TIGR01851         2 PKVFIDGEAGTTGLQIRERLSGRD-DIELLSIAPDRR-------------------K------------DAAERAKLLNA   49 (310)
T ss_pred             CeEEEECCCChhHHHHHHHHhCCC-CeEEEEEecccc-------------------c------------CcCCHhHhhcC
Confidence            38999997 999999999999874 333333322210                   0            00111133478


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCC--CCeeEEecCCCCC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHV--MPLLEIVRTERTS  462 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~--~~lvEiv~~~~t~  462 (721)
                      +|+||.|+|  ...-.++...+   ...++.|+++++......        +-..|+-=+||...  .+--.+|..+.+.
T Consensus        50 ~D~vFlalp--~~~s~~~~~~~---~~~g~~VIDlSadfRl~~--------~~~yglPEln~~~~~~i~~a~lIAnPgC~  116 (310)
T TIGR01851        50 ADVAILCLP--DDAAREAVSLV---DNPNTCIIDASTAYRTAD--------DWAYGFPELAPGQREKIRNSKRIANPGCY  116 (310)
T ss_pred             CCEEEECCC--HHHHHHHHHHH---HhCCCEEEECChHHhCCC--------CCeEEccccCHHHHHhhccCCEEECCCCH
Confidence            999999999  44444554444   246788888887654432        12222222222111  1112366666654


Q ss_pred             H-HHHHHHHHHHHH
Q 004972          463 A-QVILDLMTVGKI  475 (721)
Q Consensus       463 ~-e~~~~~~~l~~~  475 (721)
                      + ..+-.+.+|.+.
T Consensus       117 aTa~~LaL~PL~~~  130 (310)
T TIGR01851       117 PTGFIALMRPLVEA  130 (310)
T ss_pred             HHHHHHHHHHHHHc
Confidence            4 455567777775

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=91.74  E-value=0.41  Score=49.26  Aligned_cols=48  Identities=15%  Similarity=0.144  Sum_probs=42.0

Q ss_pred             CCceeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHH
Q 004972          303 RGVRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEA  350 (721)
Q Consensus       303 ~~~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~  350 (721)
                      +..+++.|-|+ +-+|..+|..|+++|++|+++.|+++++++..+++++
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~   52 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELED   52 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHH
Confidence            34578999998 9999999999999999999999999999987665543

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=91.71  E-value=0.12  Score=55.38  Aligned_cols=33  Identities=30%  Similarity=0.369  Sum_probs=29.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHH
Q 004972          307 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  339 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~  339 (721)
                      +|.|||+|.-|..+|..|+++|++|+++|+++.
T Consensus         3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~   35 (356)
T PF01494_consen    3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPD   35 (356)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence            699999999999999999999999999999764

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=91.69  E-value=0.23  Score=53.77  Aligned_cols=107  Identities=17%  Similarity=0.179  Sum_probs=60.1

Q ss_pred             ceeEEEEc-CCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCcee-ccCccc
Q 004972          305 VRKVAVIG-GGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDYSE  381 (721)
Q Consensus       305 ~~kI~VIG-~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~  381 (721)
                      +.||+|+| .|.+|..+...|..... +++++..+.+...+...   ... .....+.+...     ...+.+ ..+.+.
T Consensus         3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~---~~~-~~~~~~~~~~~-----~~~~~v~~~~~~~   73 (349)
T PRK08664          3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYG---EAV-RWQLDGPIPEE-----VADMEVVSTDPEA   73 (349)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCccc---ccc-ccccccccccc-----ccceEEEeCCHHH
Confidence            46999998 69999999999987654 88888666544322110   000 00000000000     001222 123455


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH
Q 004972          382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL  425 (721)
Q Consensus       382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i  425 (721)
                      +.++|+|+.|+|.+  ...++...+.   ..++.++++++....
T Consensus        74 ~~~~DvVf~a~p~~--~s~~~~~~~~---~~G~~vIDls~~fR~  112 (349)
T PRK08664         74 VDDVDIVFSALPSD--VAGEVEEEFA---KAGKPVFSNASAHRM  112 (349)
T ss_pred             hcCCCEEEEeCChh--HHHHHHHHHH---HCCCEEEECCchhcC
Confidence            67899999999954  3344444332   356777787876543

>PRK12829 short chain dehydrogenase; Provisional

Probab=91.68  E-value=0.94  Score=46.50  Aligned_cols=39  Identities=28%  Similarity=0.286  Sum_probs=35.0

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG  344 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  344 (721)
                      ++|.|+|+ |.+|..++..|++.|++|++.+++++..+..
T Consensus        12 ~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~   51 (264)
T PRK12829         12 LRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAAT   51 (264)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            68999997 9999999999999999999999998766554

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=91.68  E-value=0.15  Score=47.08  Aligned_cols=32  Identities=25%  Similarity=0.456  Sum_probs=29.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN  337 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~  337 (721)
                      +||.|+|+|.+|+.+|..|++.|. +++++|.+
T Consensus         3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d   35 (135)
T PF00899_consen    3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD   35 (135)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence            589999999999999999999998 79999975

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	721
2wtb_A	725	Arabidopsis Thaliana Multifuctional Protein, Mfp2 L		0.0
2x58_A	727	The Crystal Structure Of Mfe1 Liganded With Coa Len		4e-88
3zw8_A	742	Crystal Structure Of Rat Peroxisomal Multifunctiona		6e-88
3zwb_A	742	Crystal Structure Of Rat Peroxisomal Multifunctiona		4e-87
1wdk_A	715	Fatty Acid Beta-Oxidation Multienzyme Complex From		9e-75
1zcj_A	463	Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenas		2e-55
3k6j_A	460	Crystal Structure Of The Dehydrogenase Part Of Mult		2e-44
3mog_A	483	Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydroge		4e-40
3had_A	308	Biochemical Characterization And Structure Determin		2e-32
1f0y_A	302	L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Ac		3e-32
3hdh_A	302	Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydroge		3e-32
1f12_A	310	L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3-		6e-32
1lsj_A	302	Crystal Structure Of The E110q Mutant Of L-3-hydrox		7e-32
1il0_A	302	X-Ray Crystal Structure Of The E170q Mutant Of Huma		7e-32
1lso_A	302	Crystal Structure Of The S137a Mutant Of L-3-Hydrox		7e-32
1m75_A	302	Crystal Structure Of The N208s Mutant Of L-3-Hydrox		1e-31
1m76_A	302	Crystal Structure Of The S137c Mutant Of L-3-Hydrox		1e-31
3pea_A	261	Crystal Structure Of Enoyl-Coa Hydratase From Bacil		8e-26
2hdh_A	293	Biochemical Characterization And Structure Determin		2e-24
3rqs_A	324	Crystal Structure Of Human L-3- Hydroxyacyl-Coa Deh		3e-24
4dyd_A	283	Substrate-Directed Dual Catalysis Of Dicarbonyl Com		1e-17
1zej_A	293	Crystal Structure Of The 3-Hydroxyacyl-Coa Dehydrog		2e-16
3moy_A	263	Crystal Structure Of Probable Enoyl-Coa Hydratase F		1e-14
3hrx_A	254	Crystal Structure Of Phenylacetic Acid Degradation		4e-13
4fzw_A	258	Crystal Structure Of The Paaf-paag Hydratase-isomer		8e-13
3q0j_A	258	Crystal Structure Of The Mycobacterium Tuberculosis		4e-12
3h81_A	278	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		4e-12
1dub_A	261	2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph		4e-12
1mj3_A	260	Crystal Structure Analysis Of Rat Enoyl-Coa Hydrata		4e-12
3pzk_A	257	Crystal Structure Of The Mycobacterium Tuberculosis		4e-12
1ey3_A	258	Structure Of Enoyl-Coa Hydratase Complexed With The		5e-12
2pbp_A	258	Crystal Structure Of Enoyl-Coa Hydrates Subunit I (		8e-12
2hw5_A	286	The Crystal Structure Of Human Enoyl-Coenzyme A (Co		3e-11
3kqf_A	265	1.8 Angstrom Resolution Crystal Structure Of Enoyl-		4e-11
4di1_A	277	Crystal Structure Of Enoyl-Coa Hydratase Echa17 Fro		7e-11
2iex_A	272	Crystal Structure Of Dihydroxynapthoic Acid Synthet		8e-11
3g64_A	279	Crystal Structure Of Putative Enoyl-Coa Hydratase F		7e-10
3qka_A	261	Crystal Structure Of Enoyl-Coa Hydratase Echa5 From		1e-09
3sll_A	290	Crystal Structure Of A Probable Enoyl-Coa Hydratase		4e-09
4els_A	285	Structure Of E. Coli. 1,4-Dihydroxy-2- Naphthoyl Co		9e-09
3t88_A	289	Crystal Structure Of Escherichia Coli Menb In Compl		1e-08
3rsi_A	265	The Structure Of A Putative Enoyl-Coa HydrataseISOM		1e-08
3hin_A	275	Crystal Structure Of Putative Enoyl-Coa Hydratase F		1e-08
2uzf_A	273	Crystal Structure Of Staphylococcus Aureus 1,4-Dihy		3e-08
2ppy_A	265	Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) F		5e-08
1jxz_A	269	Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coe		6e-08
3trr_A	256	Crystal Structure Of A Probable Enoyl-Coa Hydratase		7e-08
1hzd_A	272	Crystal Structure Of Human Auh Protein, An Rna-Bind		7e-08
1nzy_A	269	4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo		1e-07
3h02_A	288	2.15 Angstrom Resolution Crystal Structure Of Napht		1e-07
1nzy_B	269	4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo		1e-07
3qxz_A	265	Crystal Structure Of A Probable Enoyl-Coa Hydratase		1e-07
3isa_A	254	Crystal Structure Of Putative Enoyl-Coa HydrataseIS		2e-07
3q1t_A	278	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		3e-07
3p85_A	270	Crystal Structure Enoyl-Coa Hydratase From Mycobact		3e-07
3qk8_A	272	Crystal Structure Of Enoyl-Coa Hydratase Echa15 Fro		4e-07
2vx2_A	287	Crystal Structure Of Human Enoyl Coenzyme A Hydrata		5e-07
3qyr_A	253	Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 M		8e-07
3qre_A	298	Crystal Structure Of An Enoyl-Coa Hydratase Echa12_		2e-06
3p5m_A	255	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		4e-06
4fzw_C	274	Crystal Structure Of The Paaf-paag Hydratase-isomer		5e-06
3pe8_A	256	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		1e-05
4hc8_A	255	Crystal Structure Of Probable Enoyl-Coa Hydratase E		1e-05
4eml_A	275	Synechocystis Sp. Pcc 6803 1,4-Dihydroxy-2-Naphthoy		2e-05
2ej5_A	257	Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydr		3e-05
4f47_A	278	The Structure Of Enoyl-Coa Hydratase Echa19 From My		4e-05
3r0o_A	273	Crystal Structure Of Carnitinyl-Coa Hydratase From		4e-05
3r9q_A	262	Structure Of A Probable Enoyl-Coa HydrataseISOMERAS		5e-05
1wz8_A	264	Crystal Structure Of Probable Enoyl-Coa Dehydratase		6e-05
2a7k_A	250	Carboxymethylproline Synthase (carb) From Pectobact		6e-05
3f3s_A	313	The Crystal Structure Of Human Lambda-Crystallin, C		6e-05
3l3s_A	263	Crystal Structure Of An Enoyl-Coa HydrotaseISOMERAS		1e-04
1uiy_A	253	Crystal Structure Of Enoyl-Coa Hydratase From Therm		1e-04
3qmj_A	256	Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 Fr		2e-04
3i47_A	268	Crystal Structure Of Putative Enoyl Coa HydrataseIS		2e-04
3swx_A	265	Crystal Structure Of A Probable Enoyl-Coa Hydratase		3e-04
3r9t_A	267	Structure Of Echa1_1 From Mycobacterium Paratubercu		3e-04
3r9s_A	267	Structure Of A Carnitinyl-Coa Dehydratase From Myco		3e-04
3oc7_A	267	Crystal Structure Of An Enoyl-Coa Hydratase From My		4e-04
1sg4_A	260	Crystal Structure Of Human Mitochondrial Delta3-del		5e-04
3tlf_A	274	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		8e-04

>pdb|2WTB|A Chain A, Arabidopsis Thaliana Multifuctional Protein, Mfp2 Length = 725

Iteration: 1
 Score =  800 bits (2067), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/707 (55%), Positives = 509/707 (71%), Gaps = 8/707 (1%)
Query: 5   RVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
           +  MEVG DGVA+ITLINPPVN+L+  ++  LK  +EEA SR+DVKAIV+TG  GRFSGG
Sbjct: 8   KTVMEVGGDGVAVITLINPPVNSLSFDVLYNLKSNYEEALSRNDVKAIVITGAKGRFSGG 67
Query: 65  FDINVFQKVHGAGDVSLMPD---VSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCH 121
           FDI+ F ++   G+V   P    +S++++ +L+E  +KP                 M CH
Sbjct: 68  FDISGFGEMQ-KGNVK-EPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACH 125
Query: 122 ARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 178
           ARI+AP  QLGLPEL LGVIPG   TQRLPRLVGL+KA+EM+L SK + +EEG  LGLID
Sbjct: 126 ARISAPAAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGLID 185
Query: 179 AVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 238
           AVV   EL+  +R WALDI  RRKPW+ S+ +TDKL  L EARE+L  A+ Q  K APNM
Sbjct: 186 AVVPPAELVTTARRWALDIVGRRKPWVSSVSKTDKLPPLGEAREILTFAKAQTLKRAPNM 245
Query: 239 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDI 298
                CLD IE GIV G  +G+ KEA+V  ++V LDT++GL+HVFF+QR T+KVP VTD 
Sbjct: 246 KHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKGLIHVFFSQRGTAKVPGVTDR 305
Query: 299 GLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTR 358
           GL PR ++KVA+IGGGLMGSGIATA IL+N  V+LKEVN ++L  GI  ++AN++  V +
Sbjct: 306 GLVPRKIKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRK 365
Query: 359 GKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 418
           G ++Q+K    + +LKG LDY  F+DVDMVIEAVIE++ LKQ+IF++LEK CP HCILA+
Sbjct: 366 GSMSQEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILAS 425
Query: 419 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 478
           NTSTIDLN +GE+T SQDRI+GAHFFSPAH+MPLLEIVRT  TSAQVI+DL+        
Sbjct: 426 NTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKIKK 485
Query: 479 XXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYG 538
                 NCTGFAVNR FFPY+Q+A  LV  G D + ID AI  FG+P+GPF+L DL G+G
Sbjct: 486 TPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRAISKFGMPMGPFRLCDLVGFG 545
Query: 539 VAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIE 598
           VA AT+ +F + F +R+++S ++ L+ +  R G+A  KG Y Y+   K KPDP +   IE
Sbjct: 546 VAIATATQFIENFSERTYKSMIIPLMQEDKRAGEATRKGFYLYDDKRKAKPDPELKKYIE 605
Query: 599 ECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFP 658
           + R +S +    K  +++EK+I+EM  FPVVNE+CRV  EGI V+A+DLD A ++GM FP
Sbjct: 606 KARSISGVKLDPKLANLSEKDIIEMTFFPVVNEACRVFAEGIAVKAADLDIAGIMGMGFP 665
Query: 659 SYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGI 705
            YRGGI+FWAD++G+ Y+Y+ L +WS+ YG FFKP  FL ER +KG+
Sbjct: 666 PYRGGIMFWADSIGSKYIYSRLDEWSKAYGEFFKPCAFLAERGSKGV 712

>pdb|2X58|A Chain A, The Crystal Structure Of Mfe1 Liganded With Coa Length = 727

Iteration: 1
 Score =  322 bits (826), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 223/718 (31%), Positives = 359/718 (50%), Gaps = 52/718 (7%)
Query: 15  VAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVH 74
           +A+I L NPPVNA++  ++  +++  ++A S   VKAIV+ G  G F  G DI+ F    
Sbjct: 16  LAMIRLCNPPVNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFS--- 72
Query: 75  GAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLP 134
                +  P +++  +V+ I+  +KP+                +GCH RIA  K ++GLP
Sbjct: 73  -----AFTPGLALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLP 127
Query: 135 ELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS---EELLK 188
           E+TLG++PG   TQ LPR+VG+  A++++   K ++++E  +LG++DAVV S   EE +K
Sbjct: 128 EVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVVKSDPVEEAIK 187
Query: 189 VS-RLWALDIAARR---KPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQAC 244
            + ++    I  RR   KP          + SL     V   A  + +K  P +   + C
Sbjct: 188 FAQKIIDKPIEPRRIFNKP----------VPSLPNMDSVFAEAIAKVRKQYPGVLAPETC 237
Query: 245 LDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLK--- 301
           +  I+  + H    G+ +E K+F  L     ++ L + FFA+++ +K    +    K   
Sbjct: 238 VRSIQASVKHPYEVGIKEEEKLFMYLRASGQAKALQYAFFAEKSANKWSTPSGASWKTAS 297
Query: 302 PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL 361
            + V  V V+G G MG GIA +     I VV  E + + L    K I   +    +R   
Sbjct: 298 AQPVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAH- 356
Query: 362 TQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 421
            Q+   +A   L+      E   VD+V+EAV E + LK+K+F+EL   C P   L TNTS
Sbjct: 357 -QNGQASAKPKLRFSSSTKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTS 415
Query: 422 TIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXX 481
            ++++ +   T     +IG HFFSPAHVM LLE++ +  +S   I  +M+          
Sbjct: 416 ALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGV 475
Query: 482 XXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVA- 540
              NC GF  NR   PY      L+  G     +D  +  FG  +GPF++ DLAG  V  
Sbjct: 476 VVGNCYGFVGNRMLAPYYNQGFFLLEEGSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGW 535
Query: 541 ------AATSKEFDKAFPDR----SFQSPLVDLLLKSGRNGKANGKGLYTYEK--GSKPK 588
                   T        P R    S  SPL D+L ++GR G+  GKG Y Y+K  G   K
Sbjct: 536 KIRKGQGLTGPSLPPGTPVRKRGNSRYSPLGDMLCEAGRFGQKTGKGWYQYDKPLGRIHK 595
Query: 589 PDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLD 648
           PDP +   + + R + +I    +  +++++EI+E  L+ ++NE+ R+LEEG+  R   +D
Sbjct: 596 PDPWLSTFLSQYREVHHI----EQRTISKEEILERCLYSLINEAFRILEEGMAARPEHID 651
Query: 649 DASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNF--FKPSRFLEERATKG 704
              + G  +P ++GG +F+A +VG   V   L+K+ +   +    +PS +L     +G
Sbjct: 652 VIYLHGYGWPRHKGGPMFYAASVGLPTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQG 709

>pdb|3ZW8|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) In Apo Form Length = 742

Iteration: 1
 Score =  322 bits (824), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 223/718 (31%), Positives = 359/718 (50%), Gaps = 52/718 (7%)
Query: 15  VAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVH 74
           +A+I L NPPVNA++  ++  +++  ++A S   VKAIV+ G  G F  G DI+ F    
Sbjct: 31  LAMIRLCNPPVNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFS--- 87
Query: 75  GAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLP 134
                +  P +++  +V+ I+  +KP+                +GCH RIA  K ++GLP
Sbjct: 88  -----AFTPGLALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLP 142
Query: 135 ELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS---EELLK 188
           E+TLG++PG   TQ LPR+VG+  A++++   K ++++E  +LG++DAVV S   EE +K
Sbjct: 143 EVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVVKSDPVEEAIK 202
Query: 189 VS-RLWALDIAARR---KPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQAC 244
            + ++    I  RR   KP          + SL     V   A  + +K  P +   + C
Sbjct: 203 FAQKIIDKPIEPRRIFNKP----------VPSLPNMDSVFAEAIAKVRKQYPGVLAPETC 252
Query: 245 LDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLK--- 301
           +  I+  + H    G+ +E K+F  L     ++ L + FFA+++ +K    +    K   
Sbjct: 253 VRSIQASVKHPYEVGIKEEEKLFMYLRASGQAKALQYAFFAEKSANKWSTPSGASWKTAS 312
Query: 302 PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL 361
            + V  V V+G G MG GIA +     I VV  E + + L    K I   +    +R   
Sbjct: 313 AQPVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAH- 371
Query: 362 TQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 421
            Q+   +A   L+      E   VD+V+EAV E + LK+K+F+EL   C P   L TNTS
Sbjct: 372 -QNGQASAKPKLRFSSSTKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTS 430
Query: 422 TIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXX 481
            ++++ +   T     +IG HFFSPAHVM LLE++ +  +S   I  +M+          
Sbjct: 431 ALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGV 490
Query: 482 XXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVA- 540
              NC GF  NR   PY      L+  G     +D  +  FG  +GPF++ DLAG  V  
Sbjct: 491 VVGNCYGFVGNRMLAPYYNQGFFLLEEGSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGW 550
Query: 541 ------AATSKEFDKAFPDR----SFQSPLVDLLLKSGRNGKANGKGLYTYEK--GSKPK 588
                   T        P R    S  SPL D+L ++GR G+  GKG Y Y+K  G   K
Sbjct: 551 KIRKGQGLTGPSLPPGTPVRKRGNSRYSPLGDMLCEAGRFGQKTGKGWYQYDKPLGRIHK 610
Query: 589 PDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLD 648
           PDP +   + + R + +I    +  +++++EI+E  L+ ++NE+ R+LEEG+  R   +D
Sbjct: 611 PDPWLSTFLSQYREVHHI----EQRTISKEEILERCLYSLINEAFRILEEGMAARPEHID 666
Query: 649 DASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNF--FKPSRFLEERATKG 704
              + G  +P ++GG +F+A +VG   V   L+K+ +   +    +PS +L     +G
Sbjct: 667 VIYLHGYGWPRHKGGPMFYAASVGLPTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQG 724

>pdb|3ZWB|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) Complexed With 2trans-hexenoyl-coa Length = 742

Iteration: 1
 Score =  319 bits (817), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 222/718 (30%), Positives = 358/718 (49%), Gaps = 52/718 (7%)
Query: 15  VAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVH 74
           +A+I L NPPVNA++  ++  +++  ++A S   VKAIV+ G  G F  G DI+ F    
Sbjct: 31  LAMIRLCNPPVNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFS--- 87
Query: 75  GAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLP 134
                +  P +++  +V+ I+  +KP+                +GCH RIA  K ++GLP
Sbjct: 88  -----AFTPGLALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLP 142
Query: 135 ELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS---EELLK 188
            +TLG++PG   TQ LPR+VG+  A++++   K ++++E  +LG++DAVV S   EE +K
Sbjct: 143 AVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVVKSDPVEEAIK 202
Query: 189 VS-RLWALDIAARR---KPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQAC 244
            + ++    I  RR   KP          + SL     V   A  + +K  P +   + C
Sbjct: 203 FAQKIIDKPIEPRRIFNKP----------VPSLPNMDSVFAEAIAKVRKQYPGVLAPETC 252
Query: 245 LDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLK--- 301
           +  I+  + H    G+ +E K+F  L     ++ L + FFA+++ +K    +    K   
Sbjct: 253 VRSIQASVKHPYEVGIKEEEKLFMYLRASGQAKALQYAFFAEKSANKWSTPSGASWKTAS 312
Query: 302 PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL 361
            + V  V V+G G MG GIA +     I VV  E + + L    K I   +    +R   
Sbjct: 313 AQPVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAH- 371
Query: 362 TQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 421
            Q+   +A   L+      E   VD+V+EAV E + LK+K+F+EL   C P   L TNTS
Sbjct: 372 -QNGQASAKPKLRFSSSTKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTS 430
Query: 422 TIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXX 481
            ++++ +   T     +IG HFFSPAHVM LLE++ +  +S   I  +M+          
Sbjct: 431 ALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGV 490
Query: 482 XXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVA- 540
              NC GF  NR   PY      L+  G     +D  +  FG  +GPF++ DLAG  V  
Sbjct: 491 VVGNCYGFVGNRMLAPYYNQGFFLLEEGSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGW 550
Query: 541 ------AATSKEFDKAFPDR----SFQSPLVDLLLKSGRNGKANGKGLYTYEK--GSKPK 588
                   T        P R    S  SPL D+L ++GR G+  GKG Y Y+K  G   K
Sbjct: 551 KIRKGQGLTGPSLPPGTPVRKRGNSRYSPLGDMLCEAGRFGQKTGKGWYQYDKPLGRIHK 610
Query: 589 PDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLD 648
           PDP +   + + R + +I    +  +++++EI+E  L+ ++NE+ R+LEEG+  R   +D
Sbjct: 611 PDPWLSTFLSQYREVHHI----EQRTISKEEILERCLYSLINEAFRILEEGMAARPEHID 666
Query: 649 DASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNF--FKPSRFLEERATKG 704
              + G  +P ++GG +F+A +VG   V   L+K+ +   +    +PS +L     +G
Sbjct: 667 VIYLHGYGWPRHKGGPMFYAASVGLPTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQG 724

>pdb|1WDK|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From Pseudomonas Fragi, Form I (Native2) Length = 715

Iteration: 1
 Score =  278 bits (710), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 200/677 (29%), Positives = 324/677 (47%), Gaps = 40/677 (5%)
Query: 49  VKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMP-DVSVELVVNLIEDCKKPIXXXXXX 107
           VK ++++     F  G DI  F +     D  L+  ++    + +  ED   P       
Sbjct: 53  VKGVIVSSGKDVFIVGADITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAING 112
Query: 108 XXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSK 164
                     +    R+ A   ++GLPE+ LG+ PG   T RLPRL+G+  A+E +   K
Sbjct: 113 IALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGK 172
Query: 165 SITSEEGWKLGLIDAVVTSE-------ELLKVSRLWALDIAARRKPWIRSLHRTDKLGSL 217
              +E+  K+  +DAVVT++       +L+K +    LD  A+R+P +  L    KL ++
Sbjct: 173 ENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKAKRQPKLEKL----KLNAI 228
Query: 218 SEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSR 277
            +           A +  PN P     +  I++    G    +  EA  F +L     S 
Sbjct: 229 EQMMAFETAKGFVAGQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSASN 288
Query: 278 GLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVN 337
            L+ +F   +   K   V D   K   V++ AV+G G+MG GIA         +++K++N
Sbjct: 289 CLIGLFLNDQELKKKAKVYDKIAKD--VKQAAVLGAGIMGGGIAYQSASKGTPILMKDIN 346
Query: 338 SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVP 397
              + +G+      + G V +G++T  K    L  ++  L Y +F +VD+V+EAV+E+  
Sbjct: 347 EHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNVDLVVEAVVENPK 406
Query: 398 LKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVR 457
           +KQ + +E+E       ILA+NTSTI ++++ +     +  +G HFF+P H+MPL+E++R
Sbjct: 407 VKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIR 466
Query: 458 TERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDS 517
            E++S   +   +              +C GF VNR  FPY      LVS GVD  RID 
Sbjct: 467 GEKSSDLAVATTVAYAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRIDK 526
Query: 518 AIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR--SFQSPLVDLLLKSGRNGKANG 575
            +  FG P+GP  L+D+ G            + FPDR    +   +D L ++ R G+ NG
Sbjct: 527 VMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAIDALYEAKRLGQKNG 586
Query: 576 KGLYTYEKGSKPKP----DPSVL----PIIEECRRLSNIMPGGKPISVTEKEIVEMILFP 627
           KG Y YE   K K     D SVL    PI+ E R             VT+++I+  ++ P
Sbjct: 587 KGFYAYEADKKGKQKKLVDSSVLEVLKPIVYEQR------------DVTDEDIINWMMIP 634
Query: 628 VVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLY 687
           +  E+ R LE+GIV  A++ D   V G+ FP +RGG + + D++G         ++++L 
Sbjct: 635 LCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVALADQYAEL- 693
Query: 688 GNFFKPSRFLEERATKG 704
           G  + P+  L E A  G
Sbjct: 694 GALYHPTAKLREMAKNG 710

>pdb|1ZCJ|A Chain A, Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenase Length = 463

Iteration: 1
 Score =  213 bits (543), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 140/447 (31%), Positives = 220/447 (49%), Gaps = 24/447 (5%)
Query: 276 SRGLVHVFFAQRATSKVPNVTDIGLK---PRGVRKVAVIGGGLMGSGIATAHILNNIYVV 332
           ++ L + FFA+++ +K    +    K    + V  V V+G G MG GIA +     I VV
Sbjct: 5   AKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGISVV 64
Query: 333 LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAV 392
             E + + L    K I   +    +R    Q+   +A   L+      E   VD+V+EAV
Sbjct: 65  AVESDPKQLDAAKKIITFTLEKEASRAH--QNGQASAKPKLRFSSSTKELSTVDLVVEAV 122
Query: 393 IESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPL 452
            E + LK+K+F+EL   C P   L TNTS ++++ +   T     +IG HFFSPAHVM L
Sbjct: 123 FEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRL 182
Query: 453 LEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDV 512
           LE++ +  +S   I  +M+             NC GF  NR   PY      L+  G   
Sbjct: 183 LEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEEGSKP 242
Query: 513 FRIDSAIRSFGLPIGPFQLLDLAGYGVA-------AATSKEFDKAFPDR----SFQSPLV 561
             +D  +  FG  +GPF++ DLAG  V          T        P R    S  SPL 
Sbjct: 243 EDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRYSPLG 302
Query: 562 DLLLKSGRNGKANGKGLYTYEK--GSKPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKE 619
           D+L ++GR G+  GKG Y Y+K  G   KPDP +   + + R + +I    +  +++++E
Sbjct: 303 DMLCEAGRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHI----EQRTISKEE 358
Query: 620 IVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTS 679
           I+E  L+ ++NE+ R+LEEG+  R   +D   + G  +P ++GG +F+A +VG   V   
Sbjct: 359 ILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTVLEK 418
Query: 680 LKKWSQLYGNF--FKPSRFLEERATKG 704
           L+K+ +   +    +PS +L     +G
Sbjct: 419 LQKYYRQNPDIPQLEPSDYLRRLVAQG 445

>pdb|3K6J|A Chain A, Crystal Structure Of The Dehydrogenase Part Of Multifuctional Enzyme 1 From C.Elegans Length = 460

Iteration: 1
 Score =  177 bits (449), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 111/383 (28%), Positives = 184/383 (48%), Gaps = 13/383 (3%)
Query: 305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 364
           V  VA+IGGG MG  +A    L  I   L   N +   + ++ + A  +          +
Sbjct: 54  VNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIE 113
Query: 365 KANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 424
           K N  LK+     D+ +  + D+++E+VIE + LK+++F+ LE  C   CI  TNTS++D
Sbjct: 114 KINANLKITS---DFHKLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLD 170
Query: 425 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXX 484
           LN +         ++G HFF+PA+V+ L+EI+    TS+Q I                  
Sbjct: 171 LNEISSVLRDPSNLVGIHFFNPANVIRLVEIIYGSHTSSQAIATAFQACESIKKLPVLVG 230
Query: 485 NCTGFAVNRAFFPY-SQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAAT 543
           NC  F  NR    Y  QS +L+   G    +ID  I +FG  +GP  + D+ G+ V    
Sbjct: 231 NCKSFVFNRLLHVYFDQSQKLMYEYGYLPHQIDKIITNFGFLMGPMTVADMNGFDVMEKL 290
Query: 544 SKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEECRRL 603
            KE +   P+     P+   + +  R G+   KG Y Y+  ++ K + + +  I   RR+
Sbjct: 291 KKE-NGLEPN-----PIEKEMWRLKRYGRKTNKGFYKYDDKTQRKENDTEMEQI--IRRV 342
Query: 604 SNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGG 663
           S        I + +++++  +L+P VNE  R +EEG++   S +D   +LG  +P + GG
Sbjct: 343 SQNAKSNIQI-INDQDVINFMLYPTVNEGYRCIEEGVISNESLIDIMFILGFGWPIHSGG 401
Query: 664 IVFWADAVGANYVYTSLKKWSQL 686
            + +    G + +   L  WS L
Sbjct: 402 PMRFGKTEGLDKIANMLVHWSSL 424

>pdb|3MOG|A Chain A, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase From Escherichia Coli K12 Substr. Mg1655 Length = 483

Iteration: 1
 Score =  162 bits (411), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 103/281 (36%), Positives = 150/281 (53%), Gaps = 4/281 (1%)
Query: 305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 364
           V+ VAVIG G MG+GIA     +   V+L ++++E L + I  I A +   VTRGKLT +
Sbjct: 5   VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAE 64
Query: 365 KANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 424
                LK L  V D       D+VIEA  E + +K+ +F++L + CPP  +L TNTS+I 
Sbjct: 65  TCERTLKRLIPVTDIHALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSIS 124
Query: 425 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXX 484
           +  +  +  + +R+ G HFF+PA VM L+E+V    T+A+V+  L               
Sbjct: 125 ITAIAAEIKNPERVAGLHFFNPAPVMKLVEVVSGLATAAEVVEQLCELTLSWGKQPVRCH 184
Query: 485 NCTGFAVNRAFFP-YSQSARLLVSLGVDVFRIDSAIRS-FGLPIGPFQLLDLAGYGVA-A 541
           +  GF VNR   P YS++ R L         ID+A+R   G P+GP +L DL G  V  A
Sbjct: 185 STPGFIVNRVARPYYSEAWRALEEQVAAPEVIDAALRDGAGFPMGPLELTDLIGQDVNFA 244
Query: 542 ATSKEFDKAFPDRSFQSPLVDL-LLKSGRNGKANGKGLYTY 581
            T   F+  + +R F   LV   L+  GR GK +G G+Y +
Sbjct: 245 VTCSVFNAFWQERRFLPSLVQQELVIGGRLGKKSGLGVYDW 285

>pdb|3HAD|A Chain A, Biochemical Characterization And Structure Determination Of Human Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase Provide Insight Into Catalytic Mechanism Length = 308

Iteration: 1
 Score =  137 bits (345), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/290 (32%), Positives = 142/290 (48%), Gaps = 14/290 (4%)
Query: 305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 364
           V+ V VIGGGLMG+GIA         VVL +   + L K  K IE ++R +  +      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 365 KANNAL--KMLKGVLDYSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 418
           KA +    K L  +   ++   V    D+V+EA++E++ +K ++F  L+K    H I A+
Sbjct: 75  KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKRAAEHTIFAS 134
Query: 419 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 478
           NTS++ +  +   T+ QDR  G HFF+P  VM L+E+++T  TS +    L+        
Sbjct: 135 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 479 XXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFR--IDSAIR-SFGLPIGPFQLLDLA 535
                 +  GF VNR   PY   A  L   G D  +  ID+A++   G P+GPF+LLD  
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERG-DASKEDIDTAMKLGAGYPMGPFELLDYV 253
Query: 536 GYGVAAATS---KEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYE 582
           G            E D   P     SP ++ L+   + GK  G+G Y Y+
Sbjct: 254 GLDTTKFIVDGWHEMDAENPLHQ-PSPSLNKLVAENKFGKKTGEGFYKYK 302

>pdb|1F0Y|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Acetoacetyl-Coa And Nad+ Length = 302

Iteration: 1
 Score =  137 bits (344), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 94/290 (32%), Positives = 142/290 (48%), Gaps = 14/290 (4%)
Query: 305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 364
           V+ V VIGGGLMG+GIA         VVL +   + L K  K IE ++R +  +      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 365 KANNAL--KMLKGVLDYSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 418
           KA +    K L  +   ++   V    D+V+EA++E++ +K ++F  L+K    H I A+
Sbjct: 75  KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 134
Query: 419 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 478
           NTS++ +  +   T+ QDR  G HFF+P  VM L+E+++T  TS +    L+        
Sbjct: 135 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 479 XXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFR--IDSAIR-SFGLPIGPFQLLDLA 535
                 +  GF VNR   PY   A  L   G D  +  ID+A++   G P+GPF+LLD  
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERG-DASKEDIDTAMKLGAGYPMGPFELLDYV 253
Query: 536 GYGVAAATS---KEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYE 582
           G            E D   P     SP ++ L+   + GK  G+G Y Y+
Sbjct: 254 GLDTTKFIVDGWHEMDAENPLHQ-PSPSLNKLVAENKFGKKTGEGFYKYK 302

>pdb|3HDH|A Chain A, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase Revisited: Sequence Analysis And Crystal Structure Determination Length = 302

Iteration: 1
 Score =  136 bits (343), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 94/290 (32%), Positives = 144/290 (49%), Gaps = 14/290 (4%)
Query: 305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 364
           V+ V VIGGGLMG+GIA         VVL +   + L K  K IE ++R +  +      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 365 KANNAL--KMLKGVLDYSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 418
           KA +    K L  +   ++   V    D+V+EA++E++ +K ++F  L+K    H I A+
Sbjct: 75  KAGDEFVEKTLSSISTSTDAASVVHSTDLVVEAIVENLKVKSELFKRLDKFAAEHTIFAS 134
Query: 419 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 478
           NTS++ +  +   T+ QDR  G HFF+P  +M L+E+V+T  TS + +  L+        
Sbjct: 135 NTSSLQITSLANATTRQDRFAGLHFFNPVPLMKLVEVVKTPMTSQKTLESLVDFSKTLGK 194
Query: 479 XXXXXXNCTGFAVNRAFFPY-SQSARLLVSLGVDVFRIDSAIR-SFGLPIGPFQLLDLAG 536
                 +  GF VNR   PY  ++ RL          ID+A++   G P+GPF+LLD  G
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLIEAVRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVG 254
Query: 537 YGVAAAT---SKEFDKAFPDRSFQ-SPLVDLLLKSGRNGKANGKGLYTYE 582
                       E D   P   FQ SP ++ L+   + GK  G+G Y Y+
Sbjct: 255 LDTTKFIIDGWHEMDSQNP--LFQPSPAMNKLVAENKFGKKTGEGFYKYK 302

>pdb|1F12|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3- Hydroxybutyryl-Coa Length = 310

Iteration: 1
 Score =  135 bits (341), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 94/290 (32%), Positives = 142/290 (48%), Gaps = 14/290 (4%)
Query: 305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 364
           V+ V VIGGGLMG+GIA         VVL +   + L K  K IE ++R +  +      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 365 KANNAL--KMLKGVLDYSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 418
           KA +    K L  +   ++   V    D+V+EA++E++ +K ++F  L+K    H I A+
Sbjct: 75  KAGDECVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 134
Query: 419 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 478
           NTS++ +  +   T+ QDR  G HFF+P  VM L+E+++T  TS +    L+        
Sbjct: 135 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 479 XXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFR--IDSAIR-SFGLPIGPFQLLDLA 535
                 +  GF VNR   PY   A  L   G D  +  ID+A++   G P+GPF+LLD  
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERG-DASKEDIDTAMKLGAGYPMGPFELLDYV 253
Query: 536 GYGVAAATS---KEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYE 582
           G            E D   P     SP ++ L+   + GK  G+G Y Y+
Sbjct: 254 GLDTTKFIVDGWHEMDAENPLHQ-PSPSLNKLVAENKFGKKTGEGFYKYK 302

>pdb|1LSJ|A Chain A, Crystal Structure Of The E110q Mutant Of L-3-hydroxyacyl- Coa Dehydrogenase In Complex With Nad Length = 302

Iteration: 1
 Score =  135 bits (340), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 142/290 (48%), Gaps = 14/290 (4%)
Query: 305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 364
           V+ V VIGGGLMG+GIA         VVL +   + L K  K IE ++R +  +      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 365 KANNAL--KMLKGVLDYSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 418
           KA +    K L  +   ++   V    D+V+EA+++++ +K ++F  L+K    H I A+
Sbjct: 75  KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVQNLKVKNELFKRLDKFAAEHTIFAS 134
Query: 419 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 478
           NTS++ +  +   T+ QDR  G HFF+P  VM L+E+++T  TS +    L+        
Sbjct: 135 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 479 XXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFR--IDSAIR-SFGLPIGPFQLLDLA 535
                 +  GF VNR   PY   A  L   G D  +  ID+A++   G P+GPF+LLD  
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERG-DASKEDIDTAMKLGAGYPMGPFELLDYV 253
Query: 536 GYGVAAATS---KEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYE 582
           G            E D   P     SP ++ L+   + GK  G+G Y Y+
Sbjct: 254 GLDTTKFIVDGWHEMDAENPLHQ-PSPSLNKLVAENKFGKKTGEGFYKYK 302

>pdb|1IL0|A Chain A, X-Ray Crystal Structure Of The E170q Mutant Of Human L-3- Hydroxyacyl-Coa Dehydrogenase Length = 302

Iteration: 1
 Score =  135 bits (340), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 142/290 (48%), Gaps = 14/290 (4%)
Query: 305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 364
           V+ V VIGGGLMG+GIA         VVL +   + L K  K IE ++R +  +      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 365 KANNAL--KMLKGVLDYSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 418
           KA +    K L  +   ++   V    D+V+EA++E++ +K ++F  L+K    H I A+
Sbjct: 75  KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 134
Query: 419 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 478
           NTS++ +  +   T+ QDR  G HFF+P  VM L+++++T  TS +    L+        
Sbjct: 135 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVQVIKTPMTSQKTFESLVDFSKALGK 194
Query: 479 XXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFR--IDSAIR-SFGLPIGPFQLLDLA 535
                 +  GF VNR   PY   A  L   G D  +  ID+A++   G P+GPF+LLD  
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERG-DASKEDIDTAMKLGAGYPMGPFELLDYV 253
Query: 536 GYGVAAATS---KEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYE 582
           G            E D   P     SP ++ L+   + GK  G+G Y Y+
Sbjct: 254 GLDTTKFIVDGWHEMDAENPLHQ-PSPSLNKLVAENKFGKKTGEGFYKYK 302

>pdb|1LSO|A Chain A, Crystal Structure Of The S137a Mutant Of L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad Length = 302

Iteration: 1
 Score =  135 bits (340), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 142/290 (48%), Gaps = 14/290 (4%)
Query: 305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 364
           V+ V VIGGGLMG+GIA         VVL +   + L K  K IE ++R +  +      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 365 KANNAL--KMLKGVLDYSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 418
           KA +    K L  +   ++   V    D+V+EA++E++ +K ++F  L+K    H I A+
Sbjct: 75  KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 134
Query: 419 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 478
           NT+++ +  +   T+ QDR  G HFF+P  VM L+E+++T  TS +    L+        
Sbjct: 135 NTASLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 479 XXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFR--IDSAIR-SFGLPIGPFQLLDLA 535
                 +  GF VNR   PY   A  L   G D  +  ID+A++   G P+GPF+LLD  
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERG-DASKEDIDTAMKLGAGYPMGPFELLDYV 253
Query: 536 GYGVAAATS---KEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYE 582
           G            E D   P     SP ++ L+   + GK  G+G Y Y+
Sbjct: 254 GLDTTKFIVDGWHEMDAENPLHQ-PSPSLNKLVAENKFGKKTGEGFYKYK 302

>pdb|1M75|A Chain A, Crystal Structure Of The N208s Mutant Of L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad And Acetoacetyl-Coa Length = 302

Iteration: 1
 Score =  134 bits (338), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 142/290 (48%), Gaps = 14/290 (4%)
Query: 305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 364
           V+ V VIGGGLMG+GIA         VVL +   + L K  K IE ++R +  +      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 365 KANNAL--KMLKGVLDYSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 418
           KA +    K L  +   ++   V    D+V+EA++E++ +K ++F  L+K    H I A+
Sbjct: 75  KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 134
Query: 419 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 478
           NTS++ +  +   T+ QDR  G HFF+P  VM L+E+++T  TS +    L+        
Sbjct: 135 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 479 XXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFR--IDSAIR-SFGLPIGPFQLLDLA 535
                 +  GF V+R   PY   A  L   G D  +  ID+A++   G P+GPF+LLD  
Sbjct: 195 HPVSCKDTPGFIVSRLLVPYLMEAIRLYERG-DASKEDIDTAMKLGAGYPMGPFELLDYV 253
Query: 536 GYGVAAATS---KEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYE 582
           G            E D   P     SP ++ L+   + GK  G+G Y Y+
Sbjct: 254 GLDTTKFIVDGWHEMDAENPLHQ-PSPSLNKLVAENKFGKKTGEGFYKYK 302

>pdb|1M76|A Chain A, Crystal Structure Of The S137c Mutant Of L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad And Acetoacetyl-Coa Length = 302

Iteration: 1
 Score =  134 bits (338), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 141/290 (48%), Gaps = 14/290 (4%)
Query: 305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 364
           V+ V VIGGGLMG+GIA         VVL +   + L K  K IE ++R +  +      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 365 KANNAL--KMLKGVLDYSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 418
           KA +    K L  +   ++   V    D+V+EA++E++ +K ++F  L+K    H I A+
Sbjct: 75  KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 134
Query: 419 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 478
           NT ++ +  +   T+ QDR  G HFF+P  VM L+E+++T  TS +    L+        
Sbjct: 135 NTCSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 479 XXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFR--IDSAIR-SFGLPIGPFQLLDLA 535
                 +  GF VNR   PY   A  L   G D  +  ID+A++   G P+GPF+LLD  
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERG-DASKEDIDTAMKLGAGYPMGPFELLDYV 253
Query: 536 GYGVAAATS---KEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYE 582
           G            E D   P     SP ++ L+   + GK  G+G Y Y+
Sbjct: 254 GLDTTKFIVDGWHEMDAENPLHQ-PSPSLNKLVAENKFGKKTGEGFYKYK 302

>pdb|3PEA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis Str. 'ames Ancestor' Length = 261

Iteration: 1
 Score =  115 bits (288), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 123/282 (43%), Gaps = 40/282 (14%)
Query: 12  NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
            D +A+ TL + P NA +  +   + +  ++    D+++ +V+ G G  FS G DI  F 
Sbjct: 13  EDHIAVATLNHAPANAXSSQVXHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFT 72
Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQL 131
            V  A   + +  +  ++    +E C KP+                  CH R A    +L
Sbjct: 73  SVTEAKQATELAQLG-QVTFERVEKCSKPVIAAIHGAALGGGLEFAXSCHXRFATESAKL 131
Query: 132 GLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 188
           GLPELTLG+IPG   TQRLPR VG +KA E  L S  IT  E  K GL++ V   E  L 
Sbjct: 132 GLPELTLGLIPGFAGTQRLPRYVGKAKACEXXLTSTPITGAEALKWGLVNGVFAEETFLD 191
Query: 189 VSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVI 248
            +   A  IA +               S + AR VL+L  LQ  K++             
Sbjct: 192 DTLKVAKQIAGK---------------SPATARAVLEL--LQTTKSSHY----------- 223
Query: 249 EEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 290
                   Y GV +EA++F E+   +  R  V  F  +R  S
Sbjct: 224 --------YEGVQREAQIFGEVFTSEDGREGVAAFLEKRKPS 257

>pdb|2HDH|A Chain A, Biochemical Characterization And Structure Determination Of Human Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase Provide Insight Into Catalytic Mechanism Length = 293

Iteration: 1
 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/273 (29%), Positives = 127/273 (46%), Gaps = 17/273 (6%)
Query: 321 ATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNAL--KMLKGVLD 378
           AT H      VVL +   + L K  K IE ++R +  +      KA +    K L  +  
Sbjct: 25  ATGHT-----VVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVAKTLSTIAT 79
Query: 379 YSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSS 434
            ++   V    D+V+EA++E++ +K ++F  L+K    H I A+NTS++ +  +   T+ 
Sbjct: 80  STDAASVVHSTDLVVEAIVENLKVKNELFKRLDKRAAEHTIFASNTSSLQITSIANATTR 139
Query: 435 QDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRA 494
           QDR  G HFF+P  V  L+E+++T  TS +    L+              +  GF VNR 
Sbjct: 140 QDRFAGLHFFNPVPVXKLVEVIKTPXTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRL 199
Query: 495 FFPYSQSARLLVSLGVDVFR--IDSAIR-SFGLPIGPFQLLDLAGYGVAAATSKEFDKAF 551
             PY   A  L   G D  +  ID+A +   G P GPF+LLD  G          + +  
Sbjct: 200 LVPYLXEAIRLYERG-DASKEDIDTAXKLGAGYPXGPFELLDYVGLDTTKFIVDGWHEXD 258
Query: 552 PDRSFQ--SPLVDLLLKSGRNGKANGKGLYTYE 582
            +      SP ++ L+   + GK  G+G Y Y+
Sbjct: 259 AENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 291

>pdb|3RQS|A Chain A, Crystal Structure Of Human L-3- Hydroxyacyl-Coa Dehydrogenase (Ec1.1.1.35) From Mitochondria At The Resolution 2.0 A, Northeast Structural Genomics Consortium Target Hr487, Mitochondrial Protein Partnership Length = 324

Iteration: 1
 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/273 (29%), Positives = 127/273 (46%), Gaps = 17/273 (6%)
Query: 321 ATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNAL--KMLKGVLD 378
           AT H      VVL +   + L K  K IE ++R +  +      KA +    K L  +  
Sbjct: 58  ATGHT-----VVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT 112
Query: 379 YSEFKDV----DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSS 434
            ++   V    D+V+EA++E++ +K ++F  L+K    H I A+NTS++ +  +   T+ 
Sbjct: 113 STDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTR 172
Query: 435 QDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNCTGFAVNRA 494
           QDR  G HFF+P  V  L+E+++T  TS +    L+              +  GF VNR 
Sbjct: 173 QDRFAGLHFFNPVPVXKLVEVIKTPXTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRL 232
Query: 495 FFPYSQSARLLVSLGVDVFR--IDSAIR-SFGLPIGPFQLLDLAGYGVAAATSKEFDKAF 551
             PY   A  L   G D  +  ID+A +   G P GPF+LLD  G          + +  
Sbjct: 233 LVPYLXEAIRLYERG-DASKEDIDTAXKLGAGYPXGPFELLDYVGLDTTKFIVDGWHEXD 291
Query: 552 PDRSFQ--SPLVDLLLKSGRNGKANGKGLYTYE 582
            +      SP ++ L+   + GK  G+G Y Y+
Sbjct: 292 AENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 324

>pdb|4DYD|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl Compounds By Diketoreductase Length = 283

Iteration: 1
 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 132/292 (45%), Gaps = 25/292 (8%)
Query: 304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT-RGKLT 362
           G+  V V+G G++GS IA     +   V   ++N++ L    K  E    GL     K  
Sbjct: 3   GITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFE----GLAAVYEKEV 58
Query: 363 QDKANNALKMLKGVLDYSE-----FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 417
              A+ A +   G + YS+      KD D+VIEAV ES+ LK+ I+++L +  P   I A
Sbjct: 59  AGAADGAAQKALGGIRYSDDLAQAVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFA 118
Query: 418 TNTST-IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXX 476
           TN+ST +  ++VG  T   D+ +  HF +   V    E++ T +T  +V   ++      
Sbjct: 119 TNSSTLLPSDLVG-YTGRGDKFLALHFANHVWVNNTAEVMGTTKTDPEVYQQVVEFASAI 177
Query: 477 XXX-XXXXXNCTGFAVNRAFFP-YSQSARLLVSLGVDVFRIDSAIR-SFGLPIGPFQLLD 533
                       G+ +N    P    +A LLV    D   ID   R   G P GPF++ D
Sbjct: 178 GMVPIELKKEKAGYVLNSLLVPLLDAAAELLVDGIADPETIDKTWRIGTGAPKGPFEIFD 237
Query: 534 LAG----YGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTY 581
           + G    Y +++ +  +       R F + L +  +  G+ G A G+G Y Y
Sbjct: 238 IVGLTTAYNISSVSGPK------QREFAAYLKENYIDKGKLGLATGEGFYRY 283

>pdb|1ZEJ|A Chain A, Crystal Structure Of The 3-Hydroxyacyl-Coa Dehydrogenase (Hbd-9, Af2017) From Archaeoglobus Fulgidus Dsm 4304 At 2.00 A Resolution Length = 293

Iteration: 1
 Score = 84.7 bits (208), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/281 (30%), Positives = 125/281 (44%), Gaps = 29/281 (10%)
Query: 307 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKA 366
           KV VIG GL G GIA A I +   VVL++V+        K +EA  R  +    L++ + 
Sbjct: 14  KVFVIGAGLXGRGIAIA-IASKHEVVLQDVSE-------KALEA-AREQIPEELLSKIEF 64
Query: 367 NNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 426
              L+ +K         D D+V EAV E +  K ++  E+E+    +  L +NTS I ++
Sbjct: 65  TTTLEKVK---------DCDIVXEAVFEDLNTKVEVLREVERLT--NAPLCSNTSVISVD 113
Query: 427 IVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXXXXNC 486
            + E+  S  R +G H+ +P HV PL+EIV +  T ++ +  +                C
Sbjct: 114 DIAERLDSPSRFLGVHWXNPPHVXPLVEIVISRFTDSKTVAFVEGFLRELGKEVVV---C 170
Query: 487 TGFA-VNRAFFPYSQSARLLVSLGVDVFRIDSAIR-SFGL---PIGPFQLLDLAGYGVAA 541
            G + VNR        A   +  GV    +D   +   GL     GP   LD  G  VA 
Sbjct: 171 KGQSLVNRFNAAVLSEASRXIEEGVRAEDVDRVWKHHLGLLYTLFGPLGNLDYIGLDVAY 230
Query: 542 ATSKEFDKAFPDRSFQSP-LVDLLLKSGRNGKANGKGLYTY 581
             S    K F D  F+ P  +   +K G  G   GKG+Y Y
Sbjct: 231 YASLYLYKRFGDEKFKPPEWLQEKIKKGEVGVKAGKGIYEY 271

>pdb|3MOY|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From Mycob Smegmatis Length = 263

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 102/203 (50%), Gaps = 16/203 (7%)
Query: 14  GVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQK 72
           GV +I L  P  +NAL   + A + D   +  +  ++ AIV+TG+   F+ G DI     
Sbjct: 19  GVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSERAFAAGADI----- 73
Query: 73  VHGAGDVSLMPDVSVELVV----NLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPK 128
              A  V+L P  + E  +    + +   +KPI                M C   IAA  
Sbjct: 74  ---AEMVTLTPHQARERNLLSGWDSLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADT 130
Query: 129 TQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 185
            + G PE+TLG++PG   TQRL R VG +KA+++ L  +S+T+EE  ++GL+  +V + +
Sbjct: 131 ARFGQPEITLGILPGLGGTQRLTRAVGKAKAMDLCLTGRSLTAEEAERVGLVSRIVPAAD 190
Query: 186 LLKVSRLWALDIAARRKPWIRSL 208
           LL  +   A  IA   +P  R++
Sbjct: 191 LLDEALAVAQRIARMSRPAGRAV 213

>pdb|3HRX|A Chain A, Crystal Structure Of Phenylacetic Acid Degradation Protein Paag Length = 254

Iteration: 1
 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 95/196 (48%), Gaps = 17/196 (8%)
Query: 12  NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
            DGV ++TL  P  +NA+   ++  L    +E     +V+A++LTG G  FS G D+  F
Sbjct: 7   QDGVLVLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTGAGRAFSAGQDLTEF 66
Query: 71  QKVHGAGDVSLMPDVSVEL-----VVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIA 125
                 GD    PD    L     VV  +   +KP+                +    R+A
Sbjct: 67  ------GDRK--PDYEAHLRRYNRVVEALSGLEKPLVVAVNGVAAGAGMSLALWGDLRLA 118
Query: 126 APKTQLGLPELTLGVIPGTQR---LPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 182
           A         + +G++P +     LPRLVGL+KA E++LLS  +++EE   LGL+  VV 
Sbjct: 119 AVGASFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELLLLSPRLSAEEALALGLVHRVVP 178
Query: 183 SEELLKVSRLWALDIA 198
           +E+L++ +   A ++A
Sbjct: 179 AEKLMEEALSLAKELA 194

>pdb|4FZW|A Chain A, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 258

Iteration: 1
 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 95/196 (48%), Gaps = 15/196 (7%)
Query: 15  VAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKV 73
           V ++TL  P   NAL   ++  L ++ E A +   +   V+TGN   F+ G D+N   + 
Sbjct: 15  VLLLTLNRPAARNALNNALLMQLVNELEAAATDTSISVCVITGNARFFAAGADLNEMAEK 74
Query: 74  HGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGL 133
             A  ++   D   +L   L +   KP+                + C   +A    + GL
Sbjct: 75  DLAATLN---DTRPQLWARL-QAFNKPLIAAVNGYALGAGCELALLCDVVVAGENARFGL 130
Query: 134 PELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVS 190
           PE+TLG++PG   TQRL R VG S A +M+L  +SIT+++  + GL+  V  S+  L+  
Sbjct: 131 PEITLGIMPGAGGTQRLIRSVGKSLASKMVLSGESITAQQAQQAGLVSDVFPSDLTLE-- 188
Query: 191 RLWALDIA---ARRKP 203
             +AL +A   AR  P
Sbjct: 189 --YALQLASKMARHSP 202

>pdb|3Q0J|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Complex With The Inhibitor Acetoacetylcoa Length = 258

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 88/190 (46%), Gaps = 12/190 (6%)
Query: 15  VAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKV 73
           V IITL  P  +NAL   ++  +     E     D+ AI++TG+   F+ G DI      
Sbjct: 15  VGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEM--- 71
Query: 74  HGAGDVSLMPDVSVELVVNL--IEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQL 131
               D++     + +       +   + P                 M C   IAA   + 
Sbjct: 72  ---ADLTFADAFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKF 128
Query: 132 GLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 188
           G PE+ LGV+PG   +QRL R +G +KA++++L  +++ + E  + GL+  VV +++LL 
Sbjct: 129 GQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRVVPADDLLT 188
Query: 189 VSRLWALDIA 198
            +R  A  I+
Sbjct: 189 EARATATTIS 198

>pdb|3H81|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 278

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 88/190 (46%), Gaps = 12/190 (6%)
Query: 15  VAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKV 73
           V IITL  P  +NAL   ++  +     E     D+ AI++TG+   F+ G DI      
Sbjct: 35  VGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEM--- 91
Query: 74  HGAGDVSLMPDVSVELVVNL--IEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQL 131
               D++     + +       +   + P                 M C   IAA   + 
Sbjct: 92  ---ADLTFADAFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKF 148
Query: 132 GLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 188
           G PE+ LGV+PG   +QRL R +G +KA++++L  +++ + E  + GL+  VV +++LL 
Sbjct: 149 GQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRVVPADDLLT 208
Query: 189 VSRLWALDIA 198
            +R  A  I+
Sbjct: 209 EARATATTIS 218

>pdb|1DUB|A Chain A, 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph 6.5 Length = 261

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 84/200 (42%), Gaps = 18/200 (9%)
Query: 12  NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDIN-- 68
           N  V +I L  P  +NAL   ++  L    E       V AIVLTG    F+ G DI   
Sbjct: 15  NSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEM 74
Query: 69  ---VFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIA 125
               FQ  +    +S    ++           KKP+                M C    A
Sbjct: 75  QNRTFQDCYSGKFLSHWDHIT---------RIKKPVIAAVNGYALGGGCELAMMCDIIYA 125
Query: 126 APKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 182
             K Q G PE+ LG IPG   TQRL R VG S A+EM+L    I++++  + GL+  +  
Sbjct: 126 GEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFP 185
Query: 183 SEELLKVSRLWALDIAARRK 202
            E L++ +   A  IA   K
Sbjct: 186 VETLVEEAIQCAEKIANNSK 205

>pdb|1MJ3|A Chain A, Crystal Structure Analysis Of Rat Enoyl-Coa Hydratase In Complex With Hexadienoyl-Coa Length = 260

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 84/200 (42%), Gaps = 18/200 (9%)
Query: 12  NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDIN-- 68
           N  V +I L  P  +NAL   ++  L    E       V AIVLTG    F+ G DI   
Sbjct: 14  NSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEM 73
Query: 69  ---VFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIA 125
               FQ  +    +S    ++           KKP+                M C    A
Sbjct: 74  QNRTFQDCYSGKFLSHWDHIT---------RIKKPVIAAVNGYALGGGCELAMMCDIIYA 124
Query: 126 APKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 182
             K Q G PE+ LG IPG   TQRL R VG S A+EM+L    I++++  + GL+  +  
Sbjct: 125 GEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFP 184
Query: 183 SEELLKVSRLWALDIAARRK 202
            E L++ +   A  IA   K
Sbjct: 185 VETLVEEAIQCAEKIANNSK 204

>pdb|3PZK|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Apo Form Length = 257

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 88/190 (46%), Gaps = 12/190 (6%)
Query: 15  VAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKV 73
           V IITL  P  +NAL   ++  +     E     D+ AI++TG+   F+ G DI      
Sbjct: 14  VGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEM--- 70
Query: 74  HGAGDVSLMPDVSVELVVNL--IEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQL 131
               D++     + +       +   + P                 M C   IAA   + 
Sbjct: 71  ---ADLTFADAFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKF 127
Query: 132 GLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 188
           G PE+ LGV+PG   +QRL R +G +KA++++L  +++ + E  + GL+  VV +++LL 
Sbjct: 128 GQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRVVPADDLLT 187
Query: 189 VSRLWALDIA 198
            +R  A  I+
Sbjct: 188 EARATATTIS 197

>pdb|1EY3|A Chain A, Structure Of Enoyl-Coa Hydratase Complexed With The Substrate Dac-Coa Length = 258

Iteration: 1
 Score = 70.1 bits (170), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 84/200 (42%), Gaps = 18/200 (9%)
Query: 12  NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDIN-- 68
           N  V +I L  P  +NAL   ++  L    E       V AIVLTG    F+ G DI   
Sbjct: 12  NSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEM 71
Query: 69  ---VFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIA 125
               FQ  +    +S    ++           KKP+                M C    A
Sbjct: 72  QNRTFQDCYSGKFLSHWDHIT---------RIKKPVIAAVNGYALGGGCELAMMCDIIYA 122
Query: 126 APKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 182
             K Q G PE+ LG IPG   TQRL R VG S A+EM+L    I++++  + GL+  +  
Sbjct: 123 GEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFP 182
Query: 183 SEELLKVSRLWALDIAARRK 202
            E L++ +   A  IA   K
Sbjct: 183 VETLVEEAIQCAEKIANNSK 202

>pdb|2PBP|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates Subunit I (Gk_2039) From Geobacillus Kaustophilus Hta426 Length = 258

Iteration: 1
 Score = 69.3 bits (168), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 86/186 (46%), Gaps = 22/186 (11%)
Query: 14  GVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQK 72
            V II L  P V NAL+  +VA +    E     + V+ IVLTG G  F+ G DI    K
Sbjct: 14  AVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGADIQEMAK 73
Query: 73  VHGAGDVSLMPDVSVEL-VVNLIED------CKKPIXXXXXXXXXXXXXXXXMGCHARIA 125
                      D  + L  +N   D       K P+                + C   +A
Sbjct: 74  -----------DDPIRLEWLNQFADWDRLSIVKTPMIAAVNGLALGGGFELALSCDLIVA 122
Query: 126 APKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 182
           +   + G PE+ LGV+PG   TQRL +L+G  +A+E +     ++++E  +LG+++ VV+
Sbjct: 123 SSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKRALEWLWTGARMSAKEAEQLGIVNRVVS 182
Query: 183 SEELLK 188
            E L++
Sbjct: 183 PELLME 188

>pdb|2HW5|A Chain A, The Crystal Structure Of Human Enoyl-Coenzyme A (Coa) Hydratase Short Chain 1, Echs1 Length = 286

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 87/197 (44%), Gaps = 12/197 (6%)
Query: 12  NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
           N+ V +I L  P  +NAL   ++  L    +       V AIVLTG    F+ G DI   
Sbjct: 40  NNTVGLIQLNRPKALNALCDGLIDELNQALKIFEEDPAVGAIVLTGGDKAFAAGADIKEM 99
Query: 71  QKVHGAGDVSLMPDVSVELVVNL--IEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPK 128
           Q      ++S     S + + +   +   KKP+                M C    A  K
Sbjct: 100 Q------NLSFQDCYSSKFLKHWDHLTQVKKPVIAAVNGYAFGGGCELAMMCDIIYAGEK 153
Query: 129 TQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 185
            Q   PE+ +G IPG   TQRL R VG S A+EM+L    I++++  + GL+  +   E 
Sbjct: 154 AQFAQPEILIGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKICPVET 213
Query: 186 LLKVSRLWALDIAARRK 202
           L++ +   A  IA+  K
Sbjct: 214 LVEEAIQCAEKIASNSK 230

>pdb|3KQF|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis. Length = 265

Iteration: 1
 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 73/146 (50%), Gaps = 12/146 (8%)
Query: 41  EEATSRDDVKAIVLTGNGGR-FSGGFDINVFQKVHGAGDVSLMPDVS-VELVVNLIEDCK 98
           EEA +R     ++LTG G + F  G D+   ++  G  +  +   VS +      +E   
Sbjct: 50  EEANTR----VVILTGAGEKAFCAGADL---KERAGXNEEQVRHAVSXIRTTXEXVEQLP 102
Query: 99  KPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSK 155
           +P+                + C  RIAA    LGL E TL +IPG   TQRLPRL+G+ +
Sbjct: 103 QPVIAAINGIALGGGTELSLACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGR 162
Query: 156 AIEMMLLSKSITSEEGWKLGLIDAVV 181
           A E++   + I+++E  + GL++ VV
Sbjct: 163 AKELIYTGRRISAQEAKEYGLVEFVV 188

>pdb|4DI1|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa17 From Mycobacterium Marinum Length = 277

Iteration: 1
 Score = 66.2 bits (160), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 85/188 (45%), Gaps = 5/188 (2%)
Query: 10  VGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINV 69
           V + G+A + +  PP NA+   +   +    +E   RDD+ A+VL G    FS G D+  
Sbjct: 29  VADQGLATLVVSRPPTNAMTRQVYREIVAAADELGRRDDIGAVVLFGGHEIFSAGDDMPE 88
Query: 70  FQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKT 129
            + ++ A +      V +E  ++ +    KP                 +    R++    
Sbjct: 89  LRTLN-APEADTAARVRLE-AIDAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNV 146
Query: 130 QLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 186
           + G  E+  G+IP   G  RL R+VG S+A E++   +   +EE   LGLID +V  +++
Sbjct: 147 KFGATEILAGLIPGGGGMGRLTRVVGSSRAKELVFSGRFFDAEEALALGLIDDMVAPDDV 206
Query: 187 LKVSRLWA 194
              +  WA
Sbjct: 207 YDSAVAWA 214

>pdb|2IEX|A Chain A, Crystal Structure Of Dihydroxynapthoic Acid Synthetase (Gk2873) From Geobacillus Kaustophilus Hta426 Length = 272

Iteration: 1
 Score = 65.9 bits (159), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 91/204 (44%), Gaps = 12/204 (5%)
Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
           +G+A IT+  P V NA     V  + D F +A    ++  I+LTG GG+ F  G D    
Sbjct: 20  NGIAKITINRPEVHNAFRPKTVNEMIDAFTKARDDSNIGVIILTGAGGKAFCSGGD---- 75
Query: 71  QKVHGAGDV---SLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAP 127
           QKV G G       +P ++V  +  LI    KP+                + C   IAA 
Sbjct: 76  QKVRGHGGYVGEDEIPRLNVLDLQRLIRVIPKPVIAMVAGYAIGGGHVLHVVCDLTIAAD 135
Query: 128 KTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 184
               G     +G   G      L R+VG  KA E+  L +  T++E  ++GL++ VV  E
Sbjct: 136 NAIFGQTGPKVGSFDGGYGAGYLARIVGHKKAREIWYLCRQYTAQEALEMGLVNKVVPLE 195
Query: 185 ELLKVSRLWALDIAARRKPWIRSL 208
           +L + +  WA +I  +    IR L
Sbjct: 196 QLEEETVKWAQEILEKSPTAIRFL 219

>pdb|3G64|A Chain A, Crystal Structure Of Putative Enoyl-Coa Hydratase From Streptomyces Coelicolor A3(2) Length = 279

Iteration: 1
 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 83/194 (42%), Gaps = 7/194 (3%)
Query: 12  NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
            DGVA +TL  P  +NAL     A L+D   E + R  V+A+VL G G  F  G D++  
Sbjct: 24  TDGVATVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSGGDVDEI 83
Query: 71  QKVHGAGDVSLMPDVS--VELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPK 128
                + D + + D +     VV  + +C  P+                +    R+A P 
Sbjct: 84  IGATLSXDTARLLDFNRXTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPS 143
Query: 129 TQLGLPELTLGVIPG----TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 184
           T+       +G+  G       LPR+VGL  A  ++ L  ++ + E  ++GLI  +    
Sbjct: 144 TRFAFLFTRVGLSGGDXGAAYLLPRVVGLGHATRLLXLGDTVRAPEAERIGLISELTEEG 203
Query: 185 ELLKVSRLWALDIA 198
              + +R  A  +A
Sbjct: 204 RADEAARTLARRLA 217

>pdb|3QKA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa5 From Mycobacterium Marinum Length = 261

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 76/184 (41%), Gaps = 19/184 (10%)
Query: 8   MEVGNDGVAIITLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF 65
           ++V  +G     +IN P   NA+  P  A L   F E    +     VL GNGG F  G 
Sbjct: 10  VQVERNGPVTTVIINRPQARNAVNGPTAAALYSAFAEFDRDESASVAVLCGNGGTFCAGA 69
Query: 66  DINVF-----QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGC 120
           D+  F       VH  G   + P   +           KP+                + C
Sbjct: 70  DLKAFGTAEANAVHRTGPGPMGPSRMM---------LSKPVIAAVSGYAVAGGLELALWC 120
Query: 121 HARIAAPKTQLGLPELTLGVI---PGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 177
             R+A      G+     GV     GT RLPRL+G S+A++M+L  +++ ++E   +GL 
Sbjct: 121 DLRVAEQDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDMILTGRAVQADEALAIGLA 180
Query: 178 DAVV 181
           + VV
Sbjct: 181 NRVV 184

>pdb|3SLL|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 290

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 95/211 (45%), Gaps = 18/211 (8%)
Query: 15  VAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKV 73
           +A++TL  P  +NA+A  ++   K    + +  +DV+A+V+TG G  F  G D      +
Sbjct: 34  IALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKGFCSGADQKSAGPI 93
Query: 74  HGAGDVSLMPDV---SVELVVNLIEDCKK---PIXXXXXXXXXXXXXXXXMGCHARIAAP 127
              G ++  P +   S+EL+  +I   ++   P+                + C  R+A+ 
Sbjct: 94  PHIGGLT-QPTIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQ 152
Query: 128 KTQL-------GLPELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 180
                      GL    LG+   +  LPR +G S+A ++ML  + + ++E  ++GL+   
Sbjct: 153 DAYFRAAGINNGLTASELGL---SYLLPRAIGTSRASDIMLTGRDVDADEAERIGLVSRK 209
Query: 181 VTSEELLKVSRLWALDIAARRKPWIRSLHRT 211
           V SE LL+        IA   +P I    RT
Sbjct: 210 VASESLLEECYAIGERIAGFSRPGIELTKRT 240

>pdb|4ELS|A Chain A, Structure Of E. Coli. 1,4-Dihydroxy-2- Naphthoyl Coenzyme A Synthases (Menb) In Complex With Bicarbonate Length = 285

Iteration: 1
 Score = 58.9 bits (141), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 80/197 (40%), Gaps = 5/197 (2%)
Query: 6   VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSG 63
           +  E   DG+A IT+  P V NA     V  +     +A   D++  I+LTG G + F  
Sbjct: 25  IRYEKSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCS 84
Query: 64  GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHAR 123
           G D  V     G  D S +  ++V      I  C KP+                M C   
Sbjct: 85  GGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLT 144
Query: 124 IAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 180
           IAA     G     +G   G      + R+VG  KA E+  L +   +++   +GL++ V
Sbjct: 145 IAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTV 204
Query: 181 VTSEELLKVSRLWALDI 197
           V   +L K +  W  ++
Sbjct: 205 VPLADLEKETVRWCREM 221

>pdb|3T88|A Chain A, Crystal Structure Of Escherichia Coli Menb In Complex With Substrate Analogue, Osb-Ncoa Length = 289

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 80/197 (40%), Gaps = 5/197 (2%)
Query: 6   VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSG 63
           +  E   DG+A IT+  P V NA     V  +     +A   D++  I+LTG G + F  
Sbjct: 29  IRYEKSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCS 88
Query: 64  GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHAR 123
           G D  V     G  D S +  ++V      I  C KP+                M C   
Sbjct: 89  GGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLT 148
Query: 124 IAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 180
           IAA     G     +G   G      + R+VG  KA E+  L +   +++   +GL++ V
Sbjct: 149 IAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTV 208
Query: 181 VTSEELLKVSRLWALDI 197
           V   +L K +  W  ++
Sbjct: 209 VPLADLEKETVRWCREM 225

>pdb|3RSI|A Chain A, The Structure Of A Putative Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 265

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 87/196 (44%), Gaps = 7/196 (3%)
Query: 1   MAAPRVTMEVGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG 58
           M+A R  + V  DG  +I  +N P   NAL+  +V+     ++E    D ++A +LTG G
Sbjct: 5   MSAARELL-VERDGPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAG 63
Query: 59  GRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXM 118
             +  G D++    V       L P  ++   + L     KP+                 
Sbjct: 64  SAYCVGGDLSDGWMVRDGSAPPLDP-ATIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQ 122
Query: 119 GCHARIAAPKTQLGLPELTLGVIPGTQ---RLPRLVGLSKAIEMMLLSKSITSEEGWKLG 175
               R++      GLPE+  G++PG     RL R +  +KA+EM+L  + +T+ E +  G
Sbjct: 123 QTDIRVSDEHATFGLPEVQRGLVPGAGSMVRLKRQIPYTKAMEMILTGEPLTAFEAYHFG 182
Query: 176 LIDAVVTSEELLKVSR 191
           L+  VV +   L  +R
Sbjct: 183 LVGHVVPAGTALDKAR 198

>pdb|3HIN|A Chain A, Crystal Structure Of Putative Enoyl-Coa Hydratase From Rhodopseudomonas Palustris Cga009 Length = 275

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 69/149 (46%), Gaps = 7/149 (4%)
Query: 26  NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV 85
           NAL   ++A LKD   +    D ++A+V+ G G  FS G D++  ++        L+   
Sbjct: 38  NALNDGLMAALKDCLTDIP--DQIRAVVIHGIGDHFSAGLDLSELRERDAT--EGLVHSQ 93
Query: 86  SVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVI---P 142
           +   V + I+ C+ P+                   H R+A       LPE + G+     
Sbjct: 94  TWHRVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYYALPEGSRGIFVGGG 153
Query: 143 GTQRLPRLVGLSKAIEMMLLSKSITSEEG 171
           G+ RLPRL+G+++  +MML  +  ++ EG
Sbjct: 154 GSVRLPRLIGVARMADMMLTGRVYSAAEG 182

>pdb|2UZF|A Chain A, Crystal Structure Of Staphylococcus Aureus 1,4-Dihydroxy-2- Naphthoyl Coa Synthase (Menb) In Complex With Acetoacetyl Coa Length = 273

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 89/220 (40%), Gaps = 17/220 (7%)
Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG-RFSGGFDINVF 70
           +G+A +T+  P V NA     VA + D F  A    +V  IVLTG G   F  G D    
Sbjct: 21  EGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGD---- 76
Query: 71  QKVHGAGDV---SLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAP 127
           QK  G G       +P ++V  +  LI    KP+                + C   IAA 
Sbjct: 77  QKKRGHGGYVGEDQIPRLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAAD 136
Query: 128 KTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 184
               G     +G      G+  L R+VG  KA E+  L +   ++E   +GL++ VV  E
Sbjct: 137 NAIFGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQEALDMGLVNTVVPLE 196
Query: 185 ELLKVSRLWALDIAARRKPWIRSLH-----RTDKLGSLSE 219
           ++   +  W  +I       +R L       TD L  L +
Sbjct: 197 KVEDETVQWCKEIMKHSPTALRFLKAAMNADTDGLAGLQQ 236

>pdb|2PPY|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) From Geobacillus Kaustophilus Hta426 Length = 265

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 52/85 (61%), Gaps = 4/85 (4%)
Query: 118 MGCHARIAAPKT-QLGLPELTLGVIPGT---QRLPRLVGLSKAIEMMLLSKSITSEEGWK 173
           + C  R    +  ++GLPE++LGV+ GT   QRL RL+G S+A++  +  ++IT +E  +
Sbjct: 121 LACDLRFXGDEAGKIGLPEVSLGVLAGTGGTQRLARLIGYSRALDXNITGETITPQEALE 180
Query: 174 LGLIDAVVTSEELLKVSRLWALDIA 198
           +GL++ V    E  + +R +A  +A
Sbjct: 181 IGLVNRVFPQAETRERTREYARKLA 205

>pdb|1JXZ|A Chain A, Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coenzyme A Dehalogenase Complexed With 4-Hydroxybenzoyl-Coenzyme A (Product) Length = 269

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 88/195 (45%), Gaps = 7/195 (3%)
Query: 12  NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF---DI 67
            DGVA IT+  P   NAL++  +  + D    A   D V A+++TG    F  GF   +I
Sbjct: 10  EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREI 69
Query: 68  NVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAP 127
            + + V G  D   +  +  + +++ I   K+P+                +     I A 
Sbjct: 70  PLDKGVAGVRDHFRIAALWWQQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICAD 129
Query: 128 KTQLGLPELTLGV---IPGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 184
             +      T+G+      +  L R+VG+ +A+E+ML ++++  EE    GL+  V   +
Sbjct: 130 SAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRVYPKD 189
Query: 185 ELLKVSRLWALDIAA 199
           E  +V+   A ++AA
Sbjct: 190 EFREVAWKVARELAA 204

>pdb|3TRR|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 256

Iteration: 1
 Score = 56.2 bits (134), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 82/198 (41%), Gaps = 28/198 (14%)
Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF- 70
           D V +IT+  P   NA+   +  GL    ++  S  D+   ++TG GG F  G D+  F 
Sbjct: 15  DRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGNFCAGMDLKAFV 74
Query: 71  -----QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIA 125
                    G G  ++ P              +KPI                + C   +A
Sbjct: 75  SGEAVLSERGLGFTNVPP--------------RKPIIAAVEGFALAGGTELVLSCDLVVA 120
Query: 126 APKTQLGLPELTLGVIPGTQ---RLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 182
               + G+PE+  G++ G     RLP  +    A+E+ L  +S T+E+  K G I+ +V 
Sbjct: 121 GRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQVAMELALTGESFTAEDAAKYGFINRLVD 180
Query: 183 SEELLKVSRLWALDIAAR 200
             + L      AL++AA+
Sbjct: 181 DGQALDT----ALELAAK 194

>pdb|1HZD|A Chain A, Crystal Structure Of Human Auh Protein, An Rna-Binding Homologue Of Enoyl-Coa Hydratase Length = 272

Iteration: 1
 Score = 56.2 bits (134), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 8/178 (4%)
Query: 26  NALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-GGRFSGGFDINVFQKVHGAGDVSLMPD 84
           N+L+  ++  L    +   S   V+ I++     G F  G D+    K+  +    + P 
Sbjct: 34  NSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSS---EVGPF 90
Query: 85  VS-VELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPG 143
           VS +  V+N I +   P                 + C  R+AA   ++GL E  L +IPG
Sbjct: 91  VSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPG 150
Query: 144 ---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIA 198
              TQRLPR +G+S A E++  ++ +  +E   +GLI  V+   +    +   ALD+A
Sbjct: 151 GGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLA 208

>pdb|1NZY|A Chain A, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 87/195 (44%), Gaps = 7/195 (3%)
Query: 12  NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF---DI 67
            DGVA IT+  P   NAL++  +  + D    A   D V A+++TG    F  GF   +I
Sbjct: 10  EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREI 69
Query: 68  NVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAP 127
            + + V G  D   +  +    +++ I   K+P+                +     I A 
Sbjct: 70  PLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICAD 129
Query: 128 KTQLGLPELTLGV---IPGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 184
             +      T+G+      +  L R+VG+ +A+E+ML ++++  EE    GL+  V   +
Sbjct: 130 SAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRVYPKD 189
Query: 185 ELLKVSRLWALDIAA 199
           E  +V+   A ++AA
Sbjct: 190 EFREVAWKVARELAA 204

>pdb|3H02|A Chain A, 2.15 Angstrom Resolution Crystal Structure Of Naphthoate Synthase From Salmonella Typhimurium. Length = 288

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 75/194 (38%), Gaps = 5/194 (2%)
Query: 6   VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSG 63
           +  E   DG+A IT+  P V NA     V        +A   D+V  I+LTG G + F  
Sbjct: 28  IRYEKSTDGIAKITINRPQVRNAFRPLTVKEXIQALADARYDDNVGVIILTGEGDKAFCA 87
Query: 64  GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHAR 123
           G D  V     G  D S +  ++V      I  C KP+                  C   
Sbjct: 88  GGDQKVRGDYGGYQDDSGVHHLNVLDFQRQIRTCPKPVVAXVAGYSIGGGHVLHXXCDLT 147
Query: 124 IAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 180
           IAA     G     +G   G        R+VG  KA E+  L +   +++    GL++ V
Sbjct: 148 IAAENAIFGQTGPKVGSFDGGWGASYXARIVGQKKAREIWFLCRQYDAQQALDXGLVNTV 207
Query: 181 VTSEELLKVSRLWA 194
           V   +L K +  W 
Sbjct: 208 VPLADLEKETVRWC 221

>pdb|1NZY|B Chain B, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 86/195 (44%), Gaps = 7/195 (3%)
Query: 12  NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF---DI 67
            DGVA IT+  P   NAL++  +  + D    A   D V A+++TG    F  GF   +I
Sbjct: 10  EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREI 69
Query: 68  NVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAP 127
            + + V G  D   +  +    +++ I   K+P+                +     I A 
Sbjct: 70  PLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICAD 129
Query: 128 KTQLGLPELTLGV---IPGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 184
             +      T+G+      +  L R+VG+ +A+E+ML  +++  EE    GL+  V   +
Sbjct: 130 SAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTDRTLYPEEAKDWGLVSRVYPKD 189
Query: 185 ELLKVSRLWALDIAA 199
           E  +V+   A ++AA
Sbjct: 190 EFREVAWKVARELAA 204

>pdb|3QXZ|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 265

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 7/196 (3%)
Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
            DGVA++TL  P   N+  + +   L   ++       V+ IVLTG    F  G  I+  
Sbjct: 14  RDGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAFCSGAQISAA 73
Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQ 130
            +   A      PD S   V     + + P+                +    RI A + +
Sbjct: 74  AETFAA---PRNPDFSASPVQPAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAEEGR 130
Query: 131 LGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 187
             +P++  GV P       LPRLVG + A E++L   S +++   + GL +  + + ++L
Sbjct: 131 YAIPQVRFGVAPDALAHWTLPRLVGTAVAAELLLTGASFSAQRAVETGLANRCLPAGKVL 190
Query: 188 KVSRLWALDIAARRKP 203
             +   A DIA    P
Sbjct: 191 GAALRMAHDIATNVAP 206

>pdb|3ISA|A Chain A, Crystal Structure Of Putative Enoyl-Coa HydrataseISOMERASE FROM Bordetella Parapertussis Length = 254

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 3/152 (1%)
Query: 26  NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV 85
           NAL+  +V  L D  + A  R+ V  +V  G G  FS GFD   ++     GD+ L+  V
Sbjct: 29  NALSAELVEALIDGVD-AAHREQVPLLVFAGAGRNFSAGFDFTDYE-TQSEGDL-LLRMV 85
Query: 86  SVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGTQ 145
            +E+++  +                         C  R   P+    +P L  G++ GT+
Sbjct: 86  RIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRMPGLKFGLVLGTR 145
Query: 146 RLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 177
           R   +VG  +A+ ++  +++  ++E  ++G +
Sbjct: 146 RFRDIVGADQALSILGSARAFDADEARRIGFV 177

>pdb|3Q1T|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Avium Length = 278

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 86/192 (44%), Gaps = 7/192 (3%)
Query: 4   PRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
           P +  E+G+DGV  + L +P +N++   +   L D +        V+A+++ G G  FS 
Sbjct: 19  PSLRCELGDDGVLTVVLDSPGLNSVGPQMHRDLADIWPVIDRDPAVRAVLVRGEGKAFSS 78
Query: 64  GFDINVFQKVHG--AGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCH 121
           G   ++  +  G   G + +M +   +LV N+I +C  P+                +   
Sbjct: 79  GGSFDLIDETIGDYQGRIRIMREAR-DLVHNMI-NCDTPVVSAIRGPAVGAGLVVALLAD 136
Query: 122 ARIAAPKTQLGLPELTLGVIPGTQR---LPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 178
             +A    +L      LGV  G       P LVG++KA   +L  +++  EE  ++GL+ 
Sbjct: 137 ISVAGRTAKLIDGHTKLGVAAGDHAAICWPLLVGMAKAKYYLLTCETLLGEEAERIGLVS 196
Query: 179 AVVTSEELLKVS 190
             V  +++L  +
Sbjct: 197 LCVDDDDVLSTA 208

>pdb|3P85|A Chain A, Crystal Structure Enoyl-Coa Hydratase From Mycobacterium Avium Length = 270

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 88/210 (41%), Gaps = 27/210 (12%)
Query: 15  VAIITLINPPV-NALAIPIVAGLKDKF----EEATSRDDVKAIVLTGNGGRFSGGFDINV 69
           V  +TL  P   NAL+    A L+D+F     +A + DDV  +++TG    F  G D+  
Sbjct: 35  VRTLTLNRPQARNALS----AALRDRFFGALADAETDDDVDVVIITGADPVFCAGLDLKE 90
Query: 70  FQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKT 129
                  G  S +PD+S            KP+                + C   IA+   
Sbjct: 91  L------GGSSALPDISPRWPA-----LTKPVIGAINGAAVTGGLELALYCDILIASENA 139
Query: 130 QLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 186
           +       +G++P    + RLP+ VG+  A  M L    +++ +  + GL+  VV  ++L
Sbjct: 140 RFADTHARVGLLPTWGLSVRLPQKVGIGLARRMSLTGDYLSAADALRAGLVTEVVPHDQL 199
Query: 187 LKVSRLWALDIAARRKPWIRSL----HRTD 212
           L  +R  A  I    +  +R+L    HR D
Sbjct: 200 LGAARAVAASIVGNNQNAVRALLTSYHRID 229

>pdb|3QK8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From Mycobacterium Marinum In Complex With An Unknown Ligand Length = 272

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 94/213 (44%), Gaps = 7/213 (3%)
Query: 4   PRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
           P +  E G  GV  + L +P +N++   +   L D +       DV+ +++ G G  FS 
Sbjct: 13  PSLRFEPGEHGVLNLVLDSPGLNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEGKAFSS 72
Query: 64  GFDINVFQKVHG--AGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCH 121
           G    +  +  G   G + +M +   +LV+NL+ +  KP+                +   
Sbjct: 73  GGSFELIDETIGDYEGRIRIMREAR-DLVLNLV-NLDKPVVSAIRGPAVGAGLVVALLAD 130
Query: 122 ARIAAPKTQLGLPELTLGVIPGTQR---LPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 178
             +A+   ++      LGV  G       P LVG++KA   +L  ++++ EE  ++GL+ 
Sbjct: 131 ISVASATAKIIDGHTKLGVAAGDHAAICWPLLVGMAKAKYYLLTCETLSGEEAERIGLVS 190
Query: 179 AVVTSEELLKVSRLWALDIAARRKPWIRSLHRT 211
             V  +E+L  +   A ++A   +  IR   R+
Sbjct: 191 TCVDDDEVLPTATRLAENLAQGAQNAIRWTKRS 223

>pdb|2VX2|A Chain A, Crystal Structure Of Human Enoyl Coenzyme A Hydratase Domain-Containing Protein 3 (Echdc3) Length = 287

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 85/206 (41%), Gaps = 6/206 (2%)
Query: 4   PRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFS 62
           PR T     DG+  I L NP   N L++ ++  L+         +D+K I+++  G  FS
Sbjct: 32  PRPTSARQLDGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFS 91
Query: 63  GGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHA 122
            G D+    +  G  D       +   V+  I +   P+                  C  
Sbjct: 92  SGHDLKELTEEQGR-DYHAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDI 150
Query: 123 RIAAPKTQLGLPELTLGVI---PGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDA 179
            +A+ K+    P + +G+    PG   L R V    A+EM+   + I+++E    GL+  
Sbjct: 151 AVASDKSSFATPGVNVGLFCSTPGVA-LARAVPRKVALEMLFTGEPISAQEALLHGLLSK 209
Query: 180 VVTSEELLKVSRLWALDIAARRKPWI 205
           VV   EL + +   A  IA+  +P +
Sbjct: 210 VVPEAELQEETMRIARKIASLSRPVV 235

>pdb|3QYR|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 253

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 88/210 (41%), Gaps = 27/210 (12%)
Query: 15  VAIITLINPPV-NALAIPIVAGLKDKF----EEATSRDDVKAIVLTGNGGRFSGGFDINV 69
           V  +TL  P   NAL+    A L+D+F     +A + DDV  +++TG    F  G D+  
Sbjct: 18  VRTLTLNRPQARNALS----AALRDRFFGALADAETDDDVDVVIITGADPVFCAGLDLKE 73
Query: 70  FQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKT 129
                  G  S +PD+S            KP+                + C   IA+   
Sbjct: 74  L------GGSSALPDISPRWPA-----LTKPVIGAINGAAVTGGLELALYCDILIASENA 122
Query: 130 QLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 186
           +       +G++P    + RLP+ VG+  A  M L    +++ +  + GL+  VV  ++L
Sbjct: 123 RFADTHARVGLLPTWGLSVRLPQKVGIGLARRMSLTGDYLSAADALRAGLVTEVVPHDQL 182
Query: 187 LKVSRLWALDIAARRKPWIRSL----HRTD 212
           L  ++  A  I    +  +R+L    HR D
Sbjct: 183 LGAAQAVAASIVGNNQNAVRALLASYHRID 212

>pdb|3QRE|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase Echa12_1 From Mycobacterium Marinum Length = 298

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 87/209 (41%), Gaps = 12/209 (5%)
Query: 6   VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
           V  E    GVAIIT      +NA    + AG     + A +   ++ IVLTG G  F  G
Sbjct: 31  VLYEATPGGVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGRGFCAG 90
Query: 65  FDINVFQKVHG-------AGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXX 117
             +       G       A D +L  D+  E   + +   +KP+                
Sbjct: 91  AYLGSADAAAGYDKTMAKAKDANLA-DLVGERPPHFVTMLRKPVIAAINGPCVGIGLTQA 149
Query: 118 MGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 174
           + C  R AA   +        G+I     +  LPRL   + A++++L  ++  +EE  +L
Sbjct: 150 LMCDVRFAAAGAKFAAVFARRGLIAEFGISWILPRLTSWAVALDLLLSGRTFLAEEAAQL 209
Query: 175 GLIDAVVTSEELLKVSRLWALDIAARRKP 203
           GL+  VVT E+L+  +  +A DIA    P
Sbjct: 210 GLVKEVVTPEQLMPRALEYAEDIARYCSP 238

>pdb|3P5M|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Avium Length = 255

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 80/187 (42%), Gaps = 13/187 (6%)
Query: 8   MEVGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF 65
           + V +DG  +   ++ P  +NA+  P++  L     +A + + V+A++LTG G  F  G 
Sbjct: 8   ISVEHDGAVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGRAFCSGG 67
Query: 66  DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIA 125
           D+                  +   VV  I    KP+                + C   +A
Sbjct: 68  DLTGGDTA--------GAADAANRVVRAITSLPKPVIAGVHGAAVGFGCSLALACDLVVA 119
Query: 126 APKTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 182
           AP +   L    +G++P    +  LP L+G ++   M + ++ I++   ++ G+I  + +
Sbjct: 120 APASYFQLAFTRVGLMPDGGASALLPLLIGRARTSRMAMTAEKISAATAFEWGMISHITS 179
Query: 183 SEELLKV 189
           ++E   V
Sbjct: 180 ADEYESV 186

>pdb|4FZW|C Chain C, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 274

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 85/193 (44%), Gaps = 6/193 (3%)
Query: 14  GVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDIN--VF 70
           GV  +TL  P  +N+    + A L +  ++    D ++ ++LTG G  F  G D+N    
Sbjct: 24  GVMTLTLNRPERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTGAGRGFCAGQDLNDRNV 83
Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQ 130
                A D+ +  +     +V  +    KP+                +G    IAA   +
Sbjct: 84  DPTGPAPDLGMSVERFYNPLVRRLAKLPKPVICAVNGVAAGAGATLALGGDIVIAARSAK 143
Query: 131 LGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 187
             +    LG+IP   GT  LPR+ G ++A+ + LL   +++E+  + G+I  VV  E L 
Sbjct: 144 FVMAFSKLGLIPDCGGTWLLPRVAGRARAMGLALLGNQLSAEQAHEWGMIWQVVDDETLA 203
Query: 188 KVSRLWALDIAAR 200
             ++  A  +A +
Sbjct: 204 DTAQQLARHLATQ 216

>pdb|3PE8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Smegmatis Length = 256

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 90/211 (42%), Gaps = 19/211 (9%)
Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
            D V  +TL  P   NAL+  + +       +A + DDV  +++TG    F  G D+   
Sbjct: 16  TDRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGADPVFCAGLDLKEL 75
Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQ 130
                 GD + +PD+S +       D  KP+                + C   IA+   +
Sbjct: 76  ------GDTTELPDISPKW-----PDMTKPVIGAINGAAVTGGLELALYCDILIASENAK 124
Query: 131 LGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 187
                  +G++P    + RLP+ VG+  A  M L    +++++  + GL+  VV  ++LL
Sbjct: 125 FADTHARVGLMPTWGLSVRLPQKVGVGLARRMSLTGDYLSAQDALRAGLVTEVVAHDDLL 184
Query: 188 KVSRLWALDIAARRKPWIRSL----HRTDKL 214
             +R  A  I    +  +R+L    HR D L
Sbjct: 185 TAARRVAASIVGNNQKAVRALLDSYHRIDAL 215

>pdb|4HC8|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase Echa3 (Rv0632c, Nysgrc-019494) From Mycobacterium Tuberculosis H37rv Length = 255

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 92/223 (41%), Gaps = 24/223 (10%)
Query: 13  DGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQK 72
           D +A+I+  +  VNAL       L    + A  RDDV A+V+TGNG  FSGGFD+    K
Sbjct: 13  DSIAVISXDDGKVNALGPAXQQALNAAIDNA-DRDDVGALVITGNGRVFSGGFDL----K 67
Query: 73  VHGAGDVSLMPDV---SVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKT 129
           +  +G+V    D      EL   L+   K  +                 G H R+AA   
Sbjct: 68  ILTSGEVQPAIDXLRGGFELAYRLLSYPKPVVXACTGHAIAXGAFLLSCGDH-RVAAHAY 126
Query: 130 QLGLPELTLG-VIPGTQ------RLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 182
            +   E+ +G  IP         RL R    S   +   L+K+   E     G ID +  
Sbjct: 127 NIQANEVAIGXTIPYAALEIXKLRLTR----SAYQQATGLAKTFFGETALAAGFIDEIAL 182
Query: 183 SEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLK 225
            E ++  +   A + A   +      H   KL S ++A   ++
Sbjct: 183 PEVVVSRAEEAAREFAGLNQ----HAHAATKLRSRADALTAIR 221

>pdb|4EML|A Chain A, Synechocystis Sp. Pcc 6803 1,4-Dihydroxy-2-Naphthoyl-Coenzyme A Synthase (Menb) In Complex With Bicarbonate Length = 275

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 82/204 (40%), Gaps = 9/204 (4%)
Query: 14  GVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG--GFDINVF 70
           G+A I +  P   NA     V  L D F  A   + +  ++LTG G    G   F     
Sbjct: 19  GIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGD 78
Query: 71  QKVHGAG---DVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAP 127
           Q V G G   D    P ++V  +  LI    K +                + C   IAA 
Sbjct: 79  QSVRGEGGYIDDQGTPRLNVLDLQRLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIAAD 138
Query: 128 KTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 184
               G     +G   G   +  L R+VG  KA E+  L +  +++E  ++G+++ VV  +
Sbjct: 139 NAIFGQTGPKVGSFDGGFGSSYLARIVGQKKAREIWYLCRQYSAQEAERMGMVNTVVPVD 198
Query: 185 ELLKVSRLWALDIAARRKPWIRSL 208
            L +    WA +I ++    IR L
Sbjct: 199 RLEEEGIQWAKEILSKSPLAIRCL 222

>pdb|2EJ5|A Chain A, Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydratase Subunit Ii) From Geobacillus Kaustophilus Length = 257

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 7/157 (4%)
Query: 15  VAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKV 73
           VA +TL  P  +NA    + A +    ++A +  +V+ +V+TG G  F  G D++   + 
Sbjct: 13  VAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGVTEE 72
Query: 74  HGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGL 133
              GDV       +   ++ +E   KP+                + C  R+ + K     
Sbjct: 73  MDHGDVLRSRYAPMMKALHHLE---KPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAP 129
Query: 134 PELTLGVIPGTQRL---PRLVGLSKAIEMMLLSKSIT 167
             + +G++P    L   PRLVG +KA+E+ +L + +T
Sbjct: 130 AFIHVGLVPDAGHLYYLPRLVGRAKALELAVLGEKVT 166

>pdb|4F47|A Chain A, The Structure Of Enoyl-Coa Hydratase Echa19 From Mycobacterium Marinum Length = 278

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 87/205 (42%), Gaps = 8/205 (3%)
Query: 14  GVAIITLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           G  +I  +N P   NAL+  ++  + + ++   +  D++  +LTG GG F  G D+    
Sbjct: 28  GHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAGGYFCAGMDLKAAT 87
Query: 72  KVHGAGDVSLMPDVSVELVVNLIED--CKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKT 129
           K    GD           +  L++    KKP+                 G   R+AA   
Sbjct: 88  K-KPPGDSFKDGSYDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAESA 146
Query: 130 QLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 186
           + G+ E    + P      RL R +  + A +++L  + IT+ E  ++GL+  VV   + 
Sbjct: 147 KFGISEAKWSLYPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEMGLVGHVVPDGQA 206
Query: 187 LKVSRLWALDIAARRKPWIRSLHRT 211
           L  +   A  IAA     ++++ RT
Sbjct: 207 LTKALEIAEIIAANGPLAVQAILRT 231

>pdb|3R0O|A Chain A, Crystal Structure Of Carnitinyl-Coa Hydratase From Mycobacterium Avium Length = 273

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 77/183 (42%), Gaps = 30/183 (16%)
Query: 15  VAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDI----- 67
           VA+IT+  P   NA+   +   + D  EEA    +V A+V+TG G + F  G D+     
Sbjct: 25  VALITIDRPDARNAVNGAVSTAVGDALEEAQRDPEVWAVVITGAGDKSFCAGADLKAISR 84
Query: 68  --NVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIA 125
             N++   H        P+      V+   D  KP                 +     IA
Sbjct: 85  GENLYHAEH--------PEWGFAGYVHHFID--KPTIAAVNGTALGGGSELALASDLVIA 134
Query: 126 APKTQLGLPELTLGVIPGT-------QRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 178
                 GLPE+  G+I G        ++LPR V    A+E++L  + +T+ +  + GLI+
Sbjct: 135 CESASFGLPEVKRGLIAGAGGVFRIVEQLPRKV----ALELVLTGEPMTASDALRWGLIN 190
Query: 179 AVV 181
            VV
Sbjct: 191 EVV 193

>pdb|3R9Q|A Chain A, Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 262

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 77/185 (41%), Gaps = 7/185 (3%)
Query: 26  NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV 85
           NA+  P  A L   F E  +  +    VL G+ G F  G D+       G     L P  
Sbjct: 33  NAVDGPTAAALLAAFTEFDADPEASVAVLWGDNGTFCAGADLKAMGTDRGN---ELHPHG 89
Query: 86  SVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVI---P 142
              +  + +    KP+                + C  R+      LG+     GV     
Sbjct: 90  PGPMGPSRLR-LSKPVIAAISGHAVAGGIELALWCDLRVVEEDAVLGVFCRRWGVPLIDG 148
Query: 143 GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRK 202
           GT RLPRL+G S+A++++L  + + + E   +GL++ VV   +  + +   A +IAA  +
Sbjct: 149 GTIRLPRLIGHSRAMDLILTGRPVHANEALDIGLVNRVVARGQAREAAETLAAEIAAFPQ 208
Query: 203 PWIRS 207
             +R+
Sbjct: 209 QCVRA 213

>pdb|1WZ8|A Chain A, Crystal Structure Of Probable Enoyl-Coa Dehydratase From Thermus Thermophilus Hb8 Length = 264

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 84/190 (44%), Gaps = 7/190 (3%)
Query: 14  GVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKV 73
           GV  IT     +NA+   +  GL   + +  + + V+A++L G GG FS G    + +++
Sbjct: 20  GVLEITFRGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFGLIEEM 79
Query: 74  HGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGL 133
             + +  L        +V    +  +P+                +     +    T+L  
Sbjct: 80  RASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLD 139
Query: 134 PELTLGVIPGTQRL---PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVS 190
             L LGV  G   +   P LVG++KA   +LL++ +T EE  +LGL+   V  E++ +  
Sbjct: 140 GHLRLGVAAGDHAVLLWPLLVGMAKAKYHLLLNEPLTGEEAERLGLVALAVEDEKVYEK- 198
Query: 191 RLWALDIAAR 200
              AL++A R
Sbjct: 199 ---ALEVAER 205

>pdb|2A7K|A Chain A, Carboxymethylproline Synthase (carb) From Pectobacterium Carotovora, Apo Enzyme Length = 250

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 97/243 (39%), Gaps = 23/243 (9%)
Query: 6   VTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSG 63
           +  E  +D V +ITL +P   N  +  +   +KD    A + D V+A+V+ G   R FS 
Sbjct: 1   MVFEENSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSA 60
Query: 64  GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHAR 123
           G D N  +++  + D+    D  ++L   ++ +  KP                 +    R
Sbjct: 61  GGDFNEVKQLSRSEDIEEWIDRVIDLYQAVL-NVNKPTIAAVDGYAIGMGFQFALMFDQR 119
Query: 124 IAAPKTQLGLPELT--LGVIPGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVV 181
           + A      +PEL   +G   G   L    G S   E++   +S+ +       L++ VV
Sbjct: 120 LMASTANFVMPELKHGIGCSVGAAILGFTHGFSTMQEIIYQCQSLDAPRCVDYRLVNQVV 179
Query: 182 TSEELLKVSRLWALDIA------------ARRKPWIRSLHRTDKLGSLSEAREVLKLARL 229
            S  LL  +   A  +A            A  KP+I  L +T       +A + +  A  
Sbjct: 180 ESSALLDAAITQAHVMASYPASAFINTKRAVNKPFIHLLEQT------RDASKAVHKAAF 233
Query: 230 QAK 232
           QA+
Sbjct: 234 QAR 236

>pdb|3F3S|A Chain A, The Crystal Structure Of Human Lambda-Crystallin, Cryl1 Length = 313

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 100/248 (40%), Gaps = 12/248 (4%)
Query: 308 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD-KA 366
           V ++G G++G   A         V L ++  + +   ++ I   ++ L   G L      
Sbjct: 6   VVIVGSGVIGRSWAMLFASGGFQVKLYDIEQQQIRNALENIRKEMKLLEQAGSLKGSLSV 65
Query: 367 NNALKMLKGVLDYSEFKDVDMVI-EAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL 425
              L ++ G  +  E  +  M I E V E + LK+KIF++L+       IL+++TS +  
Sbjct: 66  EEQLSLISGCPNIQEAVEGAMHIQECVPEDLELKKKIFAQLDSIIDDRVILSSSTSCLMP 125
Query: 426 NIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV---RTERTSAQVILDLMTXXXXXXXXXXX 482
           + +        + I AH  +P + +PL+E+V    T  T+      LM            
Sbjct: 126 SKLFAGLVHVKQCIVAHPVNPPYYIPLVELVPHPETAPTTVDRTHALMK--KIGQCPMRV 183
Query: 483 XXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLP-----IGPFQLLDLAGY 537
                GF +NR  +     A  LV  G+        + S GL      IGP + + L   
Sbjct: 184 QKEVAGFVLNRLQYAIISEAWRLVEEGIVSPSDLDLVMSEGLGMRYAFIGPLETMHLNAE 243
Query: 538 GVAAATSK 545
           G+ +   +
Sbjct: 244 GMLSYCDR 251

>pdb|3L3S|A Chain A, Crystal Structure Of An Enoyl-Coa HydrotaseISOMERASE FAMILY Protein From Silicibacter Pomeroyi Length = 263

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 77/210 (36%), Gaps = 18/210 (8%)
Query: 9   EVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDIN 68
           EV ++GV  +TL   P + L+   +A L D    A   D V  +V+ G G  F  G D+ 
Sbjct: 11  EVLSEGVLTLTLGRAPAHPLSRAXIAALHDALRRAXGDDHVHVLVIHGPGRIFCAGHDLK 70
Query: 69  VFQKVHGAGDVSLMPDVSVELVVNLIE----------DCKKPIXXXXXXXXXXXXXXXXM 118
              + H A      PD     V +L E           C KP                  
Sbjct: 71  EIGR-HRAD-----PDEGRAFVTDLFEACSALXLDLAHCPKPTIALVEGIATAAGLQLXA 124
Query: 119 GCHARIAAPKTQLGLPELTLGVIPGTQRLP--RLVGLSKAIEMMLLSKSITSEEGWKLGL 176
            C    A+P  +  LP +  G    T  +   R++G     E  L   +  ++     GL
Sbjct: 125 ACDLAYASPAARFCLPGVQNGGFXTTPAVAVSRVIGRRAVTEXALTGATYDADWALAAGL 184
Query: 177 IDAVVTSEELLKVSRLWALDIAARRKPWIR 206
           I+ ++    L       A  +AAR +  +R
Sbjct: 185 INRILPEAALATHVADLAGALAARNQAPLR 214

>pdb|1UIY|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Thermus Thermophilus Hb8 Length = 253

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 88/197 (44%), Gaps = 6/197 (3%)
Query: 6   VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
           V +E G+  VA++ L +P   N L+      L    ++  +   V+A+VLTG G  FS G
Sbjct: 2   VQVEKGH--VAVVFLNDPERRNPLSPEXALSLLQALDDLEADPGVRAVVLTGRGKAFSAG 59
Query: 65  FDINVFQKVHGAG-DVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHAR 123
            D+   ++V   G + +    +S+  + + +    KP                 + C   
Sbjct: 60  ADLAFLERVTELGAEENYRHSLSLXRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLV 119
Query: 124 IAAPKTQLGLPELTLGVIPG--TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVV 181
           +   + +LG  E+ +G +    +  L R VG   A +++L  + + + E   LGL++ + 
Sbjct: 120 VXDEEARLGYTEVKIGFVAALVSVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRIA 179
Query: 182 TSEELLKVSRLWALDIA 198
              + L+ ++  A ++A
Sbjct: 180 PPGKALEEAKALAEEVA 196

>pdb|3QMJ|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 From Mycobacterium Marinum Length = 256

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 86/205 (41%), Gaps = 16/205 (7%)
Query: 6   VTMEVGNDG-VAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
           VT+++ +D  V  +TL  P  +NA    +         +A     V  ++LTG+G  FS 
Sbjct: 6   VTLQIDDDNRVRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSGRGFSA 65
Query: 64  GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXX-------XXXXXXXXXX 116
           G D+   Q      + S         ++  +    KP+                      
Sbjct: 66  GTDLAEMQARITDPNFS-EGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLA 124
Query: 117 XMGCHARIAAPKTQLGL-PELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLG 175
            M   AR+  P T LG+ PE     +     LP+LVG   A  +++ S+ I +EE  ++G
Sbjct: 125 FMSSTARLKCPFTSLGVAPEAASSYL-----LPQLVGRQNAAWLLMSSEWIDAEEALRMG 179
Query: 176 LIDAVVTSEELLKVSRLWALDIAAR 200
           L+  + + EELL  +R  A  +AA+
Sbjct: 180 LVWRICSPEELLPEARRHAEILAAK 204

>pdb|3I47|A Chain A, Crystal Structure Of Putative Enoyl Coa HydrataseISOMERASE (Crotonase) From Legionella Pneumophila Subsp. Pneumophila Str. Philadelphia 1 Length = 268

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 75/179 (41%), Gaps = 9/179 (5%)
Query: 26  NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV 85
           NA    ++  ++ + + A +  +V+ IVL  NG  FS G D+   Q +    +   + D 
Sbjct: 26  NAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGKHFSAGADLTWMQSMANFTEEENLEDS 85
Query: 86  SVELVVNL---IEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIP 142
            V  + NL   I    KP                   C   IA+   +    E+ LG+IP
Sbjct: 86  LV--LGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSARFCFSEVKLGLIP 143
Query: 143 G--TQRLPRLVGLSKAIEMMLLSKSI-TSEEGWKLGLIDAVVTSEELLKVSRLWALDIA 198
              +  + R +G  +A +M+ +S  +  +   + L L+   V  + LL+ +  +A  I+
Sbjct: 144 AVISPYVVRAIG-ERAAKMLFMSAEVFDATRAYSLNLVQHCVPDDTLLEFTLKYASQIS 201

>pdb|3SWX|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 265

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 80/203 (39%), Gaps = 9/203 (4%)
Query: 7   TMEVGNDGVAIITLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
           T+ +  DG  ++  +N P   NA    ++  L     E  +  D++A VL G G  F+ G
Sbjct: 10  TLRIRRDGYVLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGPLFTAG 69
Query: 65  FDI-NVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHAR 123
            D+ +V  ++ G    SL P+  +           KP+                +     
Sbjct: 70  LDLASVAAEIQGG--ASLTPEGGINPWQVDGRQLSKPLLVAVHGKVLTLGIELALAADIV 127
Query: 124 IAAPKTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 180
           IA         E+  G+ P    T R PR  G   A+  ML + +  + E  ++G++  +
Sbjct: 128 IADETATFAQLEVNRGIYPFGGATIRFPRTAGWGNAMRWMLTADTFDAVEAHRIGIVQEI 187
Query: 181 VTSEELLKVSRLWALDIAARRKP 203
           V   E +  +   A  I AR+ P
Sbjct: 188 VPVGEHVDTAIAIAQTI-ARQAP 209

>pdb|3R9T|A Chain A, Structure Of Echa1_1 From Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 267

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 76/185 (41%), Gaps = 30/185 (16%)
Query: 15  VAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDI----- 67
           V +IT+  P   NA+   +  G+ D  EEA    +V+A+VLTG G + F  G D+     
Sbjct: 19  VMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIAR 78
Query: 68  --NVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIA 125
             N++   H        P+      V    D  KP                 +     +A
Sbjct: 79  RENLYHPDH--------PEWGFAGYVRHFID--KPTIAAVNGTALGGGTELALASDLVVA 128
Query: 126 APKTQLGLPELTLGVIPG-------TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 178
             + Q GLPE+  G+I          ++LPR V    A+ ++L  + +++      GLI+
Sbjct: 129 DERAQFGLPEVKRGLIAAAGGVFRIAEQLPRKV----AMRLLLTGEPLSAAAARDWGLIN 184
Query: 179 AVVTS 183
            VV +
Sbjct: 185 EVVEA 189

>pdb|3R9S|A Chain A, Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Avium 104 Length = 267

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 76/185 (41%), Gaps = 30/185 (16%)
Query: 15  VAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDI----- 67
           V +IT+  P   NA+   +  G+ D  EEA    +V+A+VLTG G + F  G D+     
Sbjct: 19  VMVITINRPEARNAVNAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIAR 78
Query: 68  --NVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIA 125
             N++   H        P+      V    D  KP                 +     +A
Sbjct: 79  RENLYHPDH--------PEWGFAGYVRHFID--KPTIAAVNGTALGGGTELALASDLVVA 128
Query: 126 APKTQLGLPELTLGVIPG-------TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 178
             + Q GLPE+  G+I          ++LPR V    A+ ++L  + +++      GLI+
Sbjct: 129 DERAQFGLPEVKRGLIAAAGGVFRIAEQLPRKV----AMRLLLTGEPLSAAAARDWGLIN 184
Query: 179 AVVTS 183
            VV +
Sbjct: 185 EVVEA 189

>pdb|3OC7|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase From Mycobacterium Avium Length = 267

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 76/181 (41%), Gaps = 14/181 (7%)
Query: 15  VAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKV 73
           VA +TL +P   NAL+  +V+ L     +A+S   V+ +VL   GG F  G D++   + 
Sbjct: 21  VARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGGTFCAGADLS---EA 77
Query: 74  HGAGDVSLMPDVSVE------LVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAAP 127
              G  S   D++VE       ++  I + + P+                  C   +A P
Sbjct: 78  GSGGSPSSAYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGP 137
Query: 128 KTQLGLPELTLGVIPGTQRLPRLVGLS--KAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 185
           ++   L E  +GV P    L  L  LS   A    L  +   +    ++GLI   + +E+
Sbjct: 138 RSSFALTEARIGVAPAIISLTLLPKLSARAAARYYLTGEKFDARRAEEIGLI--TMAAED 195
Query: 186 L 186
           L
Sbjct: 196 L 196

>pdb|1SG4|A Chain A, Crystal Structure Of Human Mitochondrial Delta3-delta2- Enoyl-coa Isomerase Length = 260

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 76/183 (41%), Gaps = 16/183 (8%)
Query: 14  GVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVF-- 70
           GVA++   NPPVN+L++  +  L    E+  +    + ++LT +  G FS G D+     
Sbjct: 14  GVAVMKFKNPPVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCG 73
Query: 71  -QKVHGAGDVSLMPDVSVELV-VNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIAA-- 126
               H AG    + ++ + L   NL+      +                + C  RI A  
Sbjct: 74  RSPAHYAGYWKAVQELWLRLYQSNLV------LVSAINGACPAGGCLVALTCDYRILADN 127
Query: 127 PKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 183
           P+  +GL E  LG+I        L   +G   A   + L       E  ++G++D VV  
Sbjct: 128 PRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVDQVVPE 187
Query: 184 EEL 186
           E++
Sbjct: 188 EQV 190

>pdb|3TLF|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Paratuberculosis Length = 274

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 87/197 (44%), Gaps = 19/197 (9%)
Query: 7   TMEVGNDG-VAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
           T++   DG  A ITL  P  +NAL+  ++  L+  + EA + D V  +V+TG G  F  G
Sbjct: 12  TIKYEVDGHTATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTGRAFCSG 71
Query: 65  FDIN--------VFQKVH-GAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXX 115
            D+         ++++ +    D    P         +     KP+              
Sbjct: 72  ADVKEIPEDGKVIYERPYLSTYDQWEAPQEGTPPFRTM----AKPVLTAVNGICCGAGMD 127
Query: 116 XXMGCHARIAAPKTQLGLPELTLGVIPGTQ--RLPRLVGLSKAIEMMLLSKS--ITSEEG 171
                   IA+ +     P +++G++ G +  R+ R++  S A+ M L+ K   ++++  
Sbjct: 128 WVTTTDIVIASEQATFFDPHVSIGLVAGRELVRVSRVLPRSIALRMALMGKHERMSAQRA 187
Query: 172 WKLGLIDAVVTSEELLK 188
           ++LGLI  +V  + LL+
Sbjct: 188 YELGLISEIVEHDRLLE 204

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	721
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	0.0
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	0.0
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	0.0
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	0.0
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	1e-172
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	8e-79
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	7e-24
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	6e-06
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	1e-75
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	1e-66
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	8e-60
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	9e-60
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	1e-59
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	8e-59
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	4e-58
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	5e-58
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	1e-57
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	1e-57
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	4e-57
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	6e-56
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	2e-55
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	4e-55
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	9e-55
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	1e-54
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	2e-54
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	2e-54
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	2e-54
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	2e-54
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	2e-54
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	3e-54
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	3e-54
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	5e-54
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	8e-54
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	1e-53
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	1e-53
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 11251J, struct	2e-53
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	2e-53
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	2e-53
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	3e-53
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	3e-53
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	4e-53
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	7e-53
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	9e-53
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	2e-52
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	3e-52
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	5e-52
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	6e-52
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	8e-52
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	2e-51
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	2e-51
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	4e-51
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	5e-51
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	9e-51
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	1e-50
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	1e-50
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	1e-50
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	3e-50
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	3e-50
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	7e-50
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	3e-49
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	3e-49
3t3w_A	279	Probable enoyl-COA hydratase; ssgcid, structural g	3e-49
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	4e-49
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	6e-49
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	9e-49
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	1e-48
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	1e-48
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	8e-48
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	1e-47
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	3e-47
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	2e-45
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	3e-45
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	1e-44
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	1e-44
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	2e-44
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	3e-43
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	4e-42
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	8e-42
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	2e-07
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	1e-39
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	3e-20
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	8e-20
3ctv_A	110	HBD-10, 3-hydroxyacyl-COA dehydrogenase; structura	2e-08
3ctv_A	110	HBD-10, 3-hydroxyacyl-COA dehydrogenase; structura	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
3viv_A	230	441AA long hypothetical NFED protein; protein-pept	8e-04

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Length = 725

 Score =  860 bits (2224), Expect = 0.0
 Identities = 420/725 (57%), Positives = 540/725 (74%), Gaps = 7/725 (0%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
               +  MEVG DGVA+ITLINPPVN+L+  ++  LK  +EEA SR+DVKAIV+TG  GR
Sbjct: 4   RTKGKTVMEVGGDGVAVITLINPPVNSLSFDVLYNLKSNYEEALSRNDVKAIVITGAKGR 63

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDV-SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
           FSGGFDI+ F ++             S++++ +L+E  +KP VAA++GLALGGGLELAM 
Sbjct: 64  FSGGFDISGFGEMQKGNVKEPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMA 123

Query: 120 CHARIAAPKTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 176
           CHARI+AP  QLGLPEL LGVIP   GTQRLPRLVGL+KA+EM+L SK + +EEG  LGL
Sbjct: 124 CHARISAPAAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGL 183

Query: 177 IDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 236
           IDAVV   EL+  +R WALDI  RRKPW+ S+ +TDKL  L EARE+L  A+ Q  K AP
Sbjct: 184 IDAVVPPAELVTTARRWALDIVGRRKPWVSSVSKTDKLPPLGEAREILTFAKAQTLKRAP 243

Query: 237 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVT 296
           NM     CLD IE GIV G  +G+ KEA+V  ++V LDT++GL+HVFF+QR T+KVP VT
Sbjct: 244 NMKHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKGLIHVFFSQRGTAKVPGVT 303

Query: 297 DIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLV 356
           D GL PR ++KVA+IGGGLMGSGIATA IL+N  V+LKEVN ++L  GI  ++AN++  V
Sbjct: 304 DRGLVPRKIKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRV 363

Query: 357 TRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCIL 416
            +G ++Q+K    + +LKG LDY  F+DVDMVIEAVIE++ LKQ+IF++LEK CP HCIL
Sbjct: 364 RKGSMSQEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCIL 423

Query: 417 ATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKII 476
           A+NTSTIDLN +GE+T SQDRI+GAHFFSPAH+MPLLEIVRT  TSAQVI+DL+ VGK I
Sbjct: 424 ASNTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKI 483

Query: 477 KKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAG 536
           KK PVVVGNCTGFAVNR FFPY+Q+A  LV  G D + ID AI  FG+P+GPF+L DL G
Sbjct: 484 KKTPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRAISKFGMPMGPFRLCDLVG 543

Query: 537 YGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPI 596
           +GVA AT+ +F + F +R+++S ++ L+ +  R G+A  KG Y Y+   K KPDP +   
Sbjct: 544 FGVAIATATQFIENFSERTYKSMIIPLMQEDKRAGEATRKGFYLYDDKRKAKPDPELKKY 603

Query: 597 IEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMS 656
           IE+ R +S +    K  +++EK+I+EM  FPVVNE+CRV  EGI V+A+DLD A ++GM 
Sbjct: 604 IEKARSISGVKLDPKLANLSEKDIIEMTFFPVVNEACRVFAEGIAVKAADLDIAGIMGMG 663

Query: 657 FPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSAPVSSSST 716
           FP YRGGI+FWAD++G+ Y+Y+ L +WS+ YG FFKP  FL ER +KG+ LSAPV     
Sbjct: 664 FPPYRGGIMFWADSIGSKYIYSRLDEWSKAYGEFFKPCAFLAERGSKGVLLSAPVKQ--- 720

Query: 717 SRARL 721
           + +RL
Sbjct: 721 ASSRL 725

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Length = 715

 Score =  800 bits (2068), Expect = 0.0
 Identities = 206/715 (28%), Positives = 341/715 (47%), Gaps = 18/715 (2%)

Query: 1   MAAPRVTMEVGNDGVAIITL--INPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG 58
                +T+     G+  +        VN      +  L+   +   +   VK ++++   
Sbjct: 3   YEGKAITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGK 62

Query: 59  GRFSGGFDINVFQKVHGAGDVSLMPDV-SVELVVNLIEDCKKPIVAAVEGLALGGGLELA 117
             F  G DI  F +     D  L+        + +  ED   P VAA+ G+ALGGGLE+ 
Sbjct: 63  DVFIVGADITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMC 122

Query: 118 MGCHARIAAPKTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 174
           +    R+ A   ++GLPE+ LG+ P   GT RLPRL+G+  A+E +   K   +E+  K+
Sbjct: 123 LAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRAEDALKV 182

Query: 175 GLIDAVVTSEELLKVSRLWALDIAARRKPWIR---SLHRTDKLGSLSEAREVLKLARLQA 231
             +DAVVT+++L   +        +    +           KL ++ +           A
Sbjct: 183 SAVDAVVTADKLGAAALDLIKRAISGELDYKAKRQPKLEKLKLNAIEQMMAFETAKGFVA 242

Query: 232 KKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 291
            +  PN P     +  I++    G    +  EA  F +L     S  L+ +F   +   K
Sbjct: 243 GQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSASNCLIGLFLNDQELKK 302

Query: 292 VPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEAN 351
              V D     + V++ AV+G G+MG GIA         +++K++N   + +G+      
Sbjct: 303 KAKVYDK--IAKDVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKL 360

Query: 352 VRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACP 411
           + G V +G++T  K    L  ++  L Y +F +VD+V+EAV+E+  +KQ + +E+E    
Sbjct: 361 LVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNVDLVVEAVVENPKVKQAVLAEVENHVR 420

Query: 412 PHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMT 471
              ILA+NTSTI ++++ +     +  +G HFF+P H+MPL+E++R E++S   +   + 
Sbjct: 421 EDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSDLAVATTVA 480

Query: 472 VGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQL 531
             K + K P+VV +C GF VNR  FPY      LVS GVD  RID  +  FG P+GP  L
Sbjct: 481 YAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYL 540

Query: 532 LDLAGYGVAAATSKEFDKAFPDRSFQ--SPLVDLLLKSGRNGKANGKGLYTYEKGSKPKP 589
           +D+ G            + FPDR        +D L ++ R G+ NGKG Y YE   K K 
Sbjct: 541 MDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAIDALYEAKRLGQKNGKGFYAYEADKKGKQ 600

Query: 590 DPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDD 649
              V   + E  +        +   VT+++I+  ++ P+  E+ R LE+GIV  A++ D 
Sbjct: 601 KKLVDSSVLEVLK----PIVYEQRDVTDEDIINWMMIPLCLETVRCLEDGIVETAAEADM 656

Query: 650 ASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKG 704
             V G+ FP +RGG + + D++G         ++++  G  + P+  L E A  G
Sbjct: 657 GLVYGIGFPLFRGGALRYIDSIGVAEFVALADQYAE-LGALYHPTAKLREMAKNG 710

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Length = 742

 Score =  787 bits (2035), Expect = 0.0
 Identities = 235/729 (32%), Positives = 378/729 (51%), Gaps = 45/729 (6%)

Query: 13  DGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQK 72
             +A+I L NPPVNA++  ++  +++  ++A S   VKAIV+ G  G F  G DI+ F  
Sbjct: 29  HSLAMIRLCNPPVNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFSA 88

Query: 73  VHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLG 132
                     P +++  +V+ I+  +KP++AA++G+ALGGGLELA+GCH RIA  K ++G
Sbjct: 89  --------FTPGLALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVG 140

Query: 133 LPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKV 189
           LPE+TLG++P   GTQ LPR+VG+  A++++   K ++++E  +LG++DAVV   + ++ 
Sbjct: 141 LPEVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVV-KSDPVEE 199

Query: 190 SRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIE 249
           +  +A  I  +     R       + SL     V   A  + +K  P +   + C+  I+
Sbjct: 200 AIKFAQKIIDKPIEPRRI--FNKPVPSLPNMDSVFAEAIAKVRKQYPGVLAPETCVRSIQ 257

Query: 250 EGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDI---GLKPRGVR 306
             + H    G+ +E K+F  L     ++ L + FFA+++ +K    +         + V 
Sbjct: 258 ASVKHPYEVGIKEEEKLFMYLRASGQAKALQYAFFAEKSANKWSTPSGASWKTASAQPVS 317

Query: 307 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKA 366
            V V+G G MG GIA +     I VV  E + + L    K I   +    +R       +
Sbjct: 318 SVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQAS 377

Query: 367 NNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 426
             A   L+      E   VD+V+EAV E + LK+K+F+EL   C P   L TNTS ++++
Sbjct: 378 --AKPKLRFSSSTKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVD 435

Query: 427 IVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNC 486
            +   T     +IG HFFSPAHVM LLE++ +  +S   I  +M++ K I K+ VVVGNC
Sbjct: 436 DIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNC 495

Query: 487 TGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKE 546
            GF  NR   PY      L+  G     +D  +  FG  +GPF++ DLAG  V     K 
Sbjct: 496 YGFVGNRMLAPYYNQGFFLLEEGSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKG 555

Query: 547 FDKAFPD-----------RSFQSPLVDLLLKSGRNGKANGKGLYTYEKGS--KPKPDPSV 593
                P             S  SPL D+L ++GR G+  GKG Y Y+K      KPDP +
Sbjct: 556 QGLTGPSLPPGTPVRKRGNSRYSPLGDMLCEAGRFGQKTGKGWYQYDKPLGRIHKPDPWL 615

Query: 594 LPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVL 653
              + + R + +I    +  +++++EI+E  L+ ++NE+ R+LEEG+  R   +D   + 
Sbjct: 616 STFLSQYREVHHI----EQRTISKEEILERCLYSLINEAFRILEEGMAARPEHIDVIYLH 671

Query: 654 GMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN--FFKPSRFLEERATKGI------ 705
           G  +P ++GG +F+A +VG   V   L+K+ +   +    +PS +L     +G       
Sbjct: 672 GYGWPRHKGGPMFYAASVGLPTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQGSPPLKEW 731

Query: 706 -PLSAPVSS 713
             L+ P  S
Sbjct: 732 QSLAGPHGS 740

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} Length = 463

 Score =  524 bits (1351), Expect = 0.0
 Identities = 146/465 (31%), Positives = 228/465 (49%), Gaps = 31/465 (6%)

Query: 274 DTSRGLVHVFFAQRATSKVPNVTDI---GLKPRGVRKVAVIGGGLMGSGIATAHILNNIY 330
             ++ L + FFA+++ +K    +         + V  V V+G G MG GIA +     I 
Sbjct: 3   GQAKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGIS 62

Query: 331 VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIE 390
           VV  E + + L    K I   +    +R       +  A   L+      E   VD+V+E
Sbjct: 63  VVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQAS--AKPKLRFSSSTKELSTVDLVVE 120

Query: 391 AVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVM 450
           AV E + LK+K+F+EL   C P   L TNTS ++++ +   T     +IG HFFSPAHVM
Sbjct: 121 AVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVM 180

Query: 451 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV 510
            LLE++ +  +S   I  +M++ K I K+ VVVGNC GF  NR   PY      L+  G 
Sbjct: 181 RLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEEGS 240

Query: 511 DVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPD-----------RSFQSP 559
               +D  +  FG  +GPF++ DLAG  V     K      P             S  SP
Sbjct: 241 KPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRYSP 300

Query: 560 LVDLLLKSGRNGKANGKGLYTYEKGSK--PKPDPSVLPIIEECRRLSNIMPGGKPISVTE 617
           L D+L ++GR G+  GKG Y Y+K      KPDP +   + + R + +I    +  ++++
Sbjct: 301 LGDMLCEAGRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHI----EQRTISK 356

Query: 618 KEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVY 677
           +EI+E  L+ ++NE+ R+LEEG+  R   +D   + G  +P ++GG +F+A +VG   V 
Sbjct: 357 EEILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTVL 416

Query: 678 TSLKKWSQLYGNF--FKPSRFLEERATKGI-------PLSAPVSS 713
             L+K+ +   +    +PS +L     +G         L+ P  S
Sbjct: 417 EKLQKYYRQNPDIPQLEPSDYLRRLVAQGSPPLKEWQSLAGPHGS 461

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} Length = 460

 Score =  499 bits (1287), Expect = e-172
 Identities = 114/443 (25%), Positives = 197/443 (44%), Gaps = 23/443 (5%)

Query: 272 MLDTSRGLVHVFFAQRATSKVPNV-----TDIGLKPRGVRKVAVIGGGLMGSGIATAHIL 326
           +      +        + +   ++          +   V  VA+IGGG MG  +A    L
Sbjct: 16  LYFQGSEVRSYLMEAHSLAGQWSLPNDRGDHTNSEAYDVNSVAIIGGGTMGKAMAICFGL 75

Query: 327 NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD 386
             I   L   N +   + ++ + A      +  +L   +       LK   D+ +  + D
Sbjct: 76  AGIETFLVVRNEQRCKQELEVMYAR---EKSFKRLNDKRIEKINANLKITSDFHKLSNCD 132

Query: 387 MVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSP 446
           +++E+VIE + LK+++F+ LE  C   CI  TNTS++DLN +         ++G HFF+P
Sbjct: 133 LIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEISSVLRDPSNLVGIHFFNP 192

Query: 447 AHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPY-SQSARLL 505
           A+V+ L+EI+    TS+Q I       + IKK+PV+VGNC  F  NR    Y  QS +L+
Sbjct: 193 ANVIRLVEIIYGSHTSSQAIATAFQACESIKKLPVLVGNCKSFVFNRLLHVYFDQSQKLM 252

Query: 506 VSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLL 565
              G    +ID  I +FG  +GP  + D+ G+ V     KE           +P+   + 
Sbjct: 253 YEYGYLPHQIDKIITNFGFLMGPMTVADMNGFDVMEKLKKENGLEP------NPIEKEMW 306

Query: 566 KSGRNGKANGKGLYTYEKGS-KPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMI 624
           +  R G+   KG Y Y+  + + + D  +  II    +            + +++++  +
Sbjct: 307 RLKRYGRKTNKGFYKYDDKTQRKENDTEMEQIIRRVSQ----NAKSNIQIINDQDVINFM 362

Query: 625 LFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWS 684
           L+P VNE  R +EEG++   S +D   +LG  +P + GG + +    G + +   L  WS
Sbjct: 363 LYPTVNEGYRCIEEGVISNESLIDIMFILGFGWPIHSGGPMRFGKTEGLDKIANMLVHWS 422

Query: 685 QLYGN---FFKPSRFLEERATKG 704
            L      +           + G
Sbjct: 423 SLEPKESAYIVADALKTANVSTG 445

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} Length = 483

 Score =  259 bits (664), Expect = 8e-79
 Identities = 104/302 (34%), Positives = 154/302 (50%), Gaps = 4/302 (1%)

Query: 305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 364
           V+ VAVIG G MG+GIA     +   V+L ++++E L + I  I A +   VTRGKLT +
Sbjct: 5   VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAE 64

Query: 365 KANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 424
                LK L  V D       D+VIEA  E + +K+ +F++L + CPP  +L TNTS+I 
Sbjct: 65  TCERTLKRLIPVTDIHALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSIS 124

Query: 425 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 484
           +  +  +  + +R+ G HFF+PA VM L+E+V    T+A+V+  L  +     K PV   
Sbjct: 125 ITAIAAEIKNPERVAGLHFFNPAPVMKLVEVVSGLATAAEVVEQLCELTLSWGKQPVRCH 184

Query: 485 NCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLPIGPFQLLDLAGYGVAAA 542
           +  GF VNR   PY   A   +   V     ID+A+R   G P+GP +L DL G  V  A
Sbjct: 185 STPGFIVNRVARPYYSEAWRALEEQVAAPEVIDAALRDGAGFPMGPLELTDLIGQDVNFA 244

Query: 543 TSKEFDKAFP-DRSFQ-SPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEEC 600
            +     AF  +R F  S +   L+  GR GK +G G+Y +    +       +      
Sbjct: 245 VTCSVFNAFWQERRFLPSLVQQELVIGGRLGKKSGLGVYDWRAEREAVVGLEAVSDSFSP 304

Query: 601 RR 602
            +
Sbjct: 305 MK 306

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} Length = 483

 Score =  104 bits (262), Expect = 7e-24
 Identities = 30/214 (14%), Positives = 66/214 (30%), Gaps = 16/214 (7%)

Query: 374 KGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTS 433
            GV D+   ++  + +EA +       K+  + +       +L   T       +  + +
Sbjct: 280 LGVYDWRAEREAVVGLEA-VSDSFSPMKVEKKSDGVTEIDDVLLIETQGETAQALAIRLA 338

Query: 434 SQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNR 493
               +I            ++ I              +   +   K  + + +  G  + R
Sbjct: 339 RPVVVIDKMA------GKVVTIAAAAVNPDSATRKAIYYLQQQGKTVLQIADYPGMLIWR 392

Query: 494 AFFPYSQSARLLVSLGV-DVFRIDSAIRS-FGLPIGPFQLLDLAGYGVAAATSKEFDKAF 551
                   A   +  GV     ID+A+R     P GP       G+       +     +
Sbjct: 393 TVAMIINEALDALQKGVASEQDIDTAMRLGVNYPYGPLAWGAQLGWQRILRLLENLQHHY 452

Query: 552 PDRSFQ-SPLV--DLLLKSGRNGKANGKGLYTYE 582
            +  ++   L+    LL+SG       +G + + 
Sbjct: 453 GEERYRPCSLLRQRALLESGY----ESEGHHHHH 482

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} Length = 483

 Score = 48.1 bits (115), Expect = 6e-06
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 5/83 (6%)

Query: 620 IVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTS 679
           ++   +  ++NE+   L++G V    D+D A  LG+++P    G + W   +G   +   
Sbjct: 389 LIWRTVAMIINEALDALQKG-VASEQDIDTAMRLGVNYPY---GPLAWGAQLGWQRILRL 444

Query: 680 LKKWSQLYGNF-FKPSRFLEERA 701
           L+     YG   ++P   L +RA
Sbjct: 445 LENLQHHYGEERYRPCSLLRQRA 467

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* Length = 302

 Score =  244 bits (626), Expect = 1e-75
 Identities = 94/292 (32%), Positives = 143/292 (48%), Gaps = 10/292 (3%)

Query: 301 KPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRG- 359
           K   V+ V VIGGGLMG+GIA         VVL +   + L K  K IE ++R +  +  
Sbjct: 11  KKIIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKF 70

Query: 360 ----KLTQDKANNALKMLKGVLDYSEF-KDVDMVIEAVIESVPLKQKIFSELEKACPPHC 414
               K   +     L  +    D +      D+V+EA++E++ +K ++F  L+K    H 
Sbjct: 71  AENPKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHT 130

Query: 415 ILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGK 474
           I A+NTS++ +  +   T+ QDR  G HFF+P  VM L+E+++T  TS +    L+   K
Sbjct: 131 IFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSK 190

Query: 475 IIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLPIGPFQLL 532
            + K PV   +  GF VNR   PY   A  L   G      ID+A++   G P+GPF+LL
Sbjct: 191 ALGKHPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELL 250

Query: 533 DLAGYGVAAATSKE-FDKAFPDRSFQ-SPLVDLLLKSGRNGKANGKGLYTYE 582
           D  G            +    +   Q SP ++ L+   + GK  G+G Y Y+
Sbjct: 251 DYVGLDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 302

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} Length = 293

 Score =  220 bits (564), Expect = 1e-66
 Identities = 85/309 (27%), Positives = 133/309 (43%), Gaps = 27/309 (8%)

Query: 296 TDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGL 355
           +D         KV VIG GLMG GIA A I +   VVL++V+ + L    + I   +   
Sbjct: 3   SDKIHHHHHHMKVFVIGAGLMGRGIAIA-IASKHEVVLQDVSEKALEAAREQIPEEL--- 58

Query: 356 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCI 415
                         L  ++      + KD D+V+EAV E +  K ++  E+E+    +  
Sbjct: 59  --------------LSKIEFTTTLEKVKDCDIVMEAVFEDLNTKVEVLREVERLT--NAP 102

Query: 416 LATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKI 475
           L +NTS I ++ + E+  S  R +G H+ +P HVMPL+EIV +  T ++ +  +    + 
Sbjct: 103 LCSNTSVISVDDIAERLDSPSRFLGVHWMNPPHVMPLVEIVISRFTDSKTVAFVEGFLRE 162

Query: 476 IKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIR-SFGL---PIGPFQL 531
           + K  VV        VNR        A  ++  GV    +D   +   GL     GP   
Sbjct: 163 LGKEVVVCKG--QSLVNRFNAAVLSEASRMIEEGVRAEDVDRVWKHHLGLLYTLFGPLGN 220

Query: 532 LDLAGYGVAAATSKEFDKAFPDRSFQ-SPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPD 590
           LD  G  VA   S    K F D  F+    +   +K G  G   GKG+Y Y   +  +  
Sbjct: 221 LDYIGLDVAYYASLYLYKRFGDEKFKPPEWLQEKIKKGEVGVKAGKGIYEYGPKAYEERV 280

Query: 591 PSVLPIIEE 599
             +  ++  
Sbjct: 281 ERLKKLLRF 289

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} Length = 233

 Score =  200 bits (511), Expect = 9e-60
 Identities = 50/200 (25%), Positives = 83/200 (41%), Gaps = 11/200 (5%)

Query: 6   VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF 65
           VT    +D + +I + +  VN L   +   L +  + A  RD+V A+V+ GN   FSGGF
Sbjct: 7   VTYTH-DDAIGVIRMDDGKVNVLGPTMQQALNEAIDAA-DRDNVGALVIAGNHRVFSGGF 64

Query: 66  DINVFQKVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHAR 123
           D+ V      +G+     D+      +   +    KP+V A  G A+  G  L      R
Sbjct: 65  DLKVLT----SGEAKPAIDMLRGGFELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHR 120

Query: 124 IAAPKTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 180
           +AA    +   E+ +G+       + L   +  S   +   L+K+   E     G ID +
Sbjct: 121 VAAHAYNVQANEVAIGMTIPYAAMEVLKLRLTPSAYQQAAGLAKTFFGETALAAGFIDEI 180

Query: 181 VTSEELLKVSRLWALDIAAR 200
              E +L  +   A + A  
Sbjct: 181 SLPEVVLSRAEEAAREFAGL 200

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} Length = 261

 Score =  200 bits (512), Expect = 1e-59
 Identities = 78/191 (40%), Positives = 108/191 (56%), Gaps = 4/191 (2%)

Query: 13  DGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQK 72
           D +A+ TL + P NA++  ++  + +  ++    D+++ +V+ G G  FS G DI  F  
Sbjct: 14  DHIAVATLNHAPANAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFTS 73

Query: 73  VHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLG 132
           V  A   + +  +        +E C KP++AA+ G ALGGGLE AM CH R A    +LG
Sbjct: 74  VTEAKQATELAQLGQV-TFERVEKCSKPVIAAIHGAALGGGLEFAMSCHMRFATESAKLG 132

Query: 133 LPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKV 189
           LPELTLG+IPG   TQRLPR VG +KA EMML S  IT  E  K GL++ V   E  L  
Sbjct: 133 LPELTLGLIPGFAGTQRLPRYVGKAKACEMMLTSTPITGAEALKWGLVNGVFAEETFLDD 192

Query: 190 SRLWALDIAAR 200
           +   A  IA +
Sbjct: 193 TLKVAKQIAGK 203

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} Length = 287

 Score =  199 bits (509), Expect = 8e-59
 Identities = 53/197 (26%), Positives = 85/197 (43%), Gaps = 8/197 (4%)

Query: 12  NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
             GVA I L NPPVN +   ++  L+           V+ IV +      F    D+ + 
Sbjct: 16  EHGVARIILDNPPVNVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIG 75

Query: 71  QKVHGAGDVSLMPDVSVEL---VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAP 127
           +K+    +++      V +   V  LI    +  +  + G A GGG E         AA 
Sbjct: 76  EKMDALQELAASAPADVNVFQAVGELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAAA 135

Query: 128 -KTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 183
               LG  E  +G+IPG   TQ L   VG ++A+E++L +    +E     G I+  + +
Sbjct: 136 ETAGLGQIEALMGIIPGGGGTQYLRGRVGRNRALEVVLTADLFDAETAASYGWINRALPA 195

Query: 184 EELLKVSRLWALDIAAR 200
           +EL +     A +IAA 
Sbjct: 196 DELDEYVDRVARNIAAL 212

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} Length = 265

 Score =  196 bits (502), Expect = 4e-58
 Identities = 55/193 (28%), Positives = 98/193 (50%), Gaps = 7/193 (3%)

Query: 13  DGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVFQ 71
           DG+A I L     N+  +          ++     D+K +++  +  + FS G DIN  +
Sbjct: 17  DGIAEIHLHINKSNSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAGADINFLR 76

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQ 130
                   +       E  ++ I    +  +A +EG  +GGGLE+A+ C  R    +  +
Sbjct: 77  SA-DPRFKTQFCLFCNE-TLDKIARSPQVYIACLEGHTVGGGLEMALACDLRFMGDEAGK 134

Query: 131 LGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 187
           +GLPE++LGV+    GTQRL RL+G S+A++M +  ++IT +E  ++GL++ V    E  
Sbjct: 135 IGLPEVSLGVLAGTGGTQRLARLIGYSRALDMNITGETITPQEALEIGLVNRVFPQAETR 194

Query: 188 KVSRLWALDIAAR 200
           + +R +A  +A  
Sbjct: 195 ERTREYARKLANS 207

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} Length = 289

 Score =  197 bits (504), Expect = 5e-58
 Identities = 42/196 (21%), Positives = 71/196 (36%), Gaps = 8/196 (4%)

Query: 12  NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
           +  V   T   PP+N +   +V  L    EE       + ++        F    D+   
Sbjct: 15  DGTVLSATFNAPPMNLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKV 74

Query: 71  QKVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAP- 127
            +   A            L  +   +       +A + G A G G E  + C  R A+  
Sbjct: 75  PEY-TAEAAKAGGPGDASLGMLFRKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRE 133

Query: 128 KTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 184
              LG PE+ +G  P     Q L RL+G  +A+E +L S    ++   + G ++  V   
Sbjct: 134 NAILGQPEVGIGAPPGAGAIQHLTRLLGRGRALEAVLTSSDFDADLAERYGWVNRAVPDA 193

Query: 185 ELLKVSRLWALDIAAR 200
           EL +     A  ++  
Sbjct: 194 ELDEFVAGIAARMSGF 209

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} Length = 277

 Score =  196 bits (500), Expect = 1e-57
 Identities = 60/192 (31%), Positives = 95/192 (49%), Gaps = 5/192 (2%)

Query: 12  NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           + G+A + +  PP NA+   +   +    +E   RDD+ A+VL G    FS G D+   +
Sbjct: 31  DQGLATLVVSRPPTNAMTRQVYREIVAAADELGRRDDIGAVVLFGGHEIFSAGDDMPELR 90

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
            +  A +      V +E  ++ +    KP VAAV G ALG GL LA+    R++    + 
Sbjct: 91  TL-NAPEADTAARVRLE-AIDAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNVKF 148

Query: 132 GLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 188
           G  E+  G+IP   G  RL R+VG S+A E++   +   +EE   LGLID +V  +++  
Sbjct: 149 GATEILAGLIPGGGGMGRLTRVVGSSRAKELVFSGRFFDAEEALALGLIDDMVAPDDVYD 208

Query: 189 VSRLWALDIAAR 200
            +  WA      
Sbjct: 209 SAVAWARRYLEC 220

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A Length = 260

 Score =  195 bits (499), Expect = 1e-57
 Identities = 51/209 (24%), Positives = 87/209 (41%), Gaps = 15/209 (7%)

Query: 2   AAPRVTMEV-GNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
            + RV +E     GVA++   NPPVN+L++  +  L    E+  +    + ++LT +   
Sbjct: 1   GSQRVLVEPDAGAGVAVMKFKNPPVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPG 60

Query: 61  -FSGGFDINVFQK---VHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLEL 116
            FS G D+         H AG    + ++        +      +V+A+ G    GG  +
Sbjct: 61  VFSAGLDLTEMCGRSPAHYAGYWKAVQEL-----WLRLYQSNLVLVSAINGACPAGGCLV 115

Query: 117 AMGCHARIAA--PKTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEG 171
           A+ C  RI A  P+  +GL E  LG+I        L   +G   A   + L       E 
Sbjct: 116 ALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEA 175

Query: 172 WKLGLIDAVVTSEELLKVSRLWALDIAAR 200
            ++G++D VV  E++   +        A 
Sbjct: 176 LQVGIVDQVVPEEQVQSTALSAIAQWMAI 204

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} Length = 254

 Score =  193 bits (494), Expect = 4e-57
 Identities = 43/190 (22%), Positives = 79/190 (41%), Gaps = 4/190 (2%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
                  TL  P   NAL+  +V  L D  + A  R+ V  +V  G G  FS GFD   +
Sbjct: 14  RPAAWTFTLSRPEKRNALSAELVEALIDGVDAA-HREQVPLLVFAGAGRNFSAGFDFTDY 72

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
           +       +  M  +  E+++  +       +A   G   G G++L   C  R   P+  
Sbjct: 73  ETQSEGDLLLRMVRI--EMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAG 130

Query: 131 LGLPELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVS 190
             +P L  G++ GT+R   +VG  +A+ ++  +++  ++E  ++G +       +   + 
Sbjct: 131 FRMPGLKFGLVLGTRRFRDIVGADQALSILGSARAFDADEARRIGFVRDCAAQAQWPALI 190

Query: 191 RLWALDIAAR 200
              A    A 
Sbjct: 191 DAAAEAATAL 200

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} Length = 275

 Score =  191 bits (488), Expect = 6e-56
 Identities = 56/192 (29%), Positives = 94/192 (48%), Gaps = 8/192 (4%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
             V  I L  P   NAL   ++A LKD   +    D ++A+V+ G G  FS G D++  +
Sbjct: 24  GPVLTIGLNRPKKRNALNDGLMAALKDCLTDI--PDQIRAVVIHGIGDHFSAGLDLSELR 81

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
           +   A +  +        V + I+ C+ P++AA++G  +GGGLELA   H R+A      
Sbjct: 82  ER-DATEGLVHSQTWHR-VFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYY 139

Query: 132 GLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 188
            LPE + G+     G+ RLPRL+G+++  +MML  +  ++ EG   G    ++ +     
Sbjct: 140 ALPEGSRGIFVGGGGSVRLPRLIGVARMADMMLTGRVYSAAEGVVHGFSQYLIENGSAYD 199

Query: 189 VSRLWALDIAAR 200
            +      +A  
Sbjct: 200 KALELGNRVAQN 211

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} Length = 265

 Score =  189 bits (483), Expect = 2e-55
 Identities = 60/205 (29%), Positives = 108/205 (52%), Gaps = 7/205 (3%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           +    ++++     V  I+L      N+L++ ++  L++   +     + + ++LTG G 
Sbjct: 5   LQLQNISVDYATPHVVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGE 64

Query: 60  R-FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAM 118
           + F  G D+     +     V     +     + ++E   +P++AA+ G+ALGGG EL++
Sbjct: 65  KAFCAGADLKERAGM-NEEQVRHAVSMIRT-TMEMVEQLPQPVIAAINGIALGGGTELSL 122

Query: 119 GCHARIAAPKTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLG 175
            C  RIAA    LGL E TL +IP   GTQRLPRL+G+ +A E++   + I+++E  + G
Sbjct: 123 ACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEYG 182

Query: 176 LIDAVVTSEELLKVSRLWALDIAAR 200
           L++ VV    L + +   A  IA+ 
Sbjct: 183 LVEFVVPVHLLEEKAIEIAEKIASN 207

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} Length = 232

 Score =  187 bits (478), Expect = 4e-55
 Identities = 47/205 (22%), Positives = 83/205 (40%), Gaps = 22/205 (10%)

Query: 6   VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF 65
           V+  + +DGVA +TL N  VNA++  ++       ++A    D   +++TG  G  SGG+
Sbjct: 8   VSYHL-DDGVATLTLNNGKVNAISPDVIIAFNAALDQA--EKDRAIVIVTGQPGILSGGY 64

Query: 66  DINVFQKVHGAGDVSLMPDVSVELVVNL------IEDCKKPIVAAVEGLALGGGLELAMG 119
           D+ V              + ++ LV         +     PI+ A  G A+  G  L + 
Sbjct: 65  DLKVMTS---------SAEAAINLVAQGSTLARRMLSHPFPIIVACPGHAVAKGAFLLLS 115

Query: 120 CHARIAAPKT-QLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLG 175
              RI       +GL E+ +G+     G +     +  S     ++ ++    E     G
Sbjct: 116 ADYRIGVAGPFSIGLNEVQIGMTMHHAGIELARDRLRKSAFNRSVINAEMFDPEGAMAAG 175

Query: 176 LIDAVVTSEELLKVSRLWALDIAAR 200
            +D VV+ EEL   +   A  +   
Sbjct: 176 FLDKVVSVEELQGAALAVAAQLKKI 200

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* Length = 276

 Score =  188 bits (479), Expect = 9e-55
 Identities = 45/195 (23%), Positives = 85/195 (43%), Gaps = 7/195 (3%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           DG+A + L  P   NA++  +   + D  E          +VLTG G  ++ G D+  + 
Sbjct: 17  DGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYF 76

Query: 72  KVHGAGDVSLMPDVSVELVVNL---IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
           +   AG   L   +  E        +    KP +A V G   GGG    + C   I A +
Sbjct: 77  REVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADE 136

Query: 129 TQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 185
              GL E+  G+ P    ++ +   VG  +++  ++  K+   ++  ++GL++  V   +
Sbjct: 137 ATFGLSEINWGIPPGNLVSKAMADTVGHRQSLMYIMTGKTFGGQKAAEMGLVNESVPLAQ 196

Query: 186 LLKVSRLWALDIAAR 200
           L +V+   A ++  +
Sbjct: 197 LREVTIELARNLLEK 211

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A Length = 243

 Score =  186 bits (475), Expect = 1e-54
 Identities = 48/192 (25%), Positives = 83/192 (43%), Gaps = 11/192 (5%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           +GV  IT+ +    N  +  IV GL+  F         K ++LTG G  FS G       
Sbjct: 11  NGVVQITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYGNYFSSGASKEFLI 70

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
           +           +V V  +  LI DC+ PI+AA++G + GGGL L +     + + ++  
Sbjct: 71  R-------KTRGEVEVLDLSGLILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQESVY 123

Query: 132 GLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 188
               +  G  P    +  L   +G   A EM+   ++   +E  + G+   VV+ +++L 
Sbjct: 124 ATNFMKYGFTPVGATSLILREKLGSELAQEMIYTGENYRGKELAERGIPFPVVSRQDVLN 183

Query: 189 VSRLWALDIAAR 200
            ++     IA  
Sbjct: 184 YAQQLGQKIAKS 195

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} PDB: 3q1t_A Length = 272

 Score =  187 bits (477), Expect = 2e-54
 Identities = 48/198 (24%), Positives = 92/198 (46%), Gaps = 3/198 (1%)

Query: 6   VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF 65
           +  E G  GV  + L +P +N++   +   L D +       DV+ +++ G G  FS G 
Sbjct: 15  LRFEPGEHGVLNLVLDSPGLNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEGKAFSSGG 74

Query: 66  DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIA 125
              +  +  G  +  +        +V  + +  KP+V+A+ G A+G GL +A+     +A
Sbjct: 75  SFELIDETIGDYEGRIRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVA 134

Query: 126 APKTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 182
           +   ++      LGV          P LVG++KA   +L  ++++ EE  ++GL+   V 
Sbjct: 135 SATAKIIDGHTKLGVAAGDHAAICWPLLVGMAKAKYYLLTCETLSGEEAERIGLVSTCVD 194

Query: 183 SEELLKVSRLWALDIAAR 200
            +E+L  +   A ++A  
Sbjct: 195 DDEVLPTATRLAENLAQG 212

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A Length = 258

 Score =  186 bits (476), Expect = 2e-54
 Identities = 67/193 (34%), Positives = 105/193 (54%), Gaps = 8/193 (4%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
              V II L  P V NAL+  +VA +    E     + V+ IVLTG G  F+ G DI   
Sbjct: 12  EGAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGADIQEM 71

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
            K     D   +  ++     + +   K P++AAV GLALGGG ELA+ C   +A+   +
Sbjct: 72  AKD----DPIRLEWLNQFADWDRLSIVKTPMIAAVNGLALGGGFELALSCDLIVASSAAE 127

Query: 131 LGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 187
            G PE+ LGV+PG   TQRL +L+G  +A+E +     ++++E  +LG+++ VV+ E L+
Sbjct: 128 FGFPEVNLGVMPGAGGTQRLTKLIGPKRALEWLWTGARMSAKEAEQLGIVNRVVSPELLM 187

Query: 188 KVSRLWALDIAAR 200
           + +   A  +A +
Sbjct: 188 EETMRLAGRLAEQ 200

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} Length = 265

 Score =  186 bits (476), Expect = 2e-54
 Identities = 51/203 (25%), Positives = 81/203 (39%), Gaps = 6/203 (2%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
                + +   +  V +I L  P   NA    ++  L     E  +  D++A VL G G 
Sbjct: 6   SDYETLRIRR-DGYVLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGP 64

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            F+ G D+         G  SL P+  +           KP++ AV G  L  G+ELA+ 
Sbjct: 65  LFTAGLDLASVAA-EIQGGASLTPEGGINPWQVDGRQLSKPLLVAVHGKVLTLGIELALA 123

Query: 120 CHARIAAPKTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 176
               IA         E+  G+ P    T R PR  G   A+  ML + +  + E  ++G+
Sbjct: 124 ADIVIADETATFAQLEVNRGIYPFGGATIRFPRTAGWGNAMRWMLTADTFDAVEAHRIGI 183

Query: 177 IDAVVTSEELLKVSRLWALDIAA 199
           +  +V   E +  +   A  IA 
Sbjct: 184 VQEIVPVGEHVDTAIAIAQTIAR 206

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A 2iex_A Length = 289

 Score =  187 bits (478), Expect = 2e-54
 Identities = 60/200 (30%), Positives = 90/200 (45%), Gaps = 5/200 (2%)

Query: 6   VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSG 63
           +  E   DG+A IT+  P V NA     V  +     +A   D++  I+LTG G + F  
Sbjct: 29  IRYEKSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCS 88

Query: 64  GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHAR 123
           G D  V     G  D S +  ++V      I  C KP+VA V G ++GGG  L M C   
Sbjct: 89  GGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLT 148

Query: 124 IAAPKTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 180
           IAA     G     +G      G   + R+VG  KA E+  L +   +++   +GL++ V
Sbjct: 149 IAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTV 208

Query: 181 VTSEELLKVSRLWALDIAAR 200
           V   +L K +  W  ++   
Sbjct: 209 VPLADLEKETVRWCREMLQN 228

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} Length = 263

 Score =  186 bits (475), Expect = 2e-54
 Identities = 70/204 (34%), Positives = 106/204 (51%), Gaps = 8/204 (3%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
                +       GV +I L  P   NAL   + A + D   +  +  ++ AIV+TG+  
Sbjct: 6   TTYTTIATSRPVAGVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSER 65

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            F+ G DI     +          + ++    + +   +KPIVAAV G ALGGG ELAM 
Sbjct: 66  AFAAGADIAEMVTL----TPHQARERNLLSGWDSLTQVRKPIVAAVAGYALGGGCELAML 121

Query: 120 CHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 176
           C   IAA   + G PE+TLG++PG   TQRL R VG +KA+++ L  +S+T+EE  ++GL
Sbjct: 122 CDLVIAADTARFGQPEITLGILPGLGGTQRLTRAVGKAKAMDLCLTGRSLTAEEAERVGL 181

Query: 177 IDAVVTSEELLKVSRLWALDIAAR 200
           +  +V + +LL  +   A  IA  
Sbjct: 182 VSRIVPAADLLDEALAVAQRIARM 205

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* Length = 278

 Score =  187 bits (476), Expect = 3e-54
 Identities = 65/204 (31%), Positives = 102/204 (50%), Gaps = 9/204 (4%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           M    + +E  +  V IITL  P   NAL   ++  +     E     D+ AI++TG+  
Sbjct: 22  MTYETILVER-DQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAK 80

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            F+ G DI     +      +             +   + P +AAV G ALGGG ELAM 
Sbjct: 81  AFAAGADIKEMADL----TFADAFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMM 136

Query: 120 CHARIAAPKTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 176
           C   IAA   + G PE+ LGV+P   G+QRL R +G +KA++++L  +++ + E  + GL
Sbjct: 137 CDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGL 196

Query: 177 IDAVVTSEELLKVSRLWALDIAAR 200
           +  VV +++LL  +R  A  I+  
Sbjct: 197 VSRVVPADDLLTEARATATTISQM 220

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* Length = 250

 Score =  185 bits (473), Expect = 3e-54
 Identities = 53/192 (27%), Positives = 90/192 (46%), Gaps = 5/192 (2%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
           D V +ITL +P   N  +  +   +KD    A + D V+A+V+ G   R FS G D N  
Sbjct: 8   DEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEV 67

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
           +++  + D+    D  ++ +   + +  KP +AAV+G A+G G + A+    R+ A    
Sbjct: 68  KQLSRSEDIEEWIDRVID-LYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTAN 126

Query: 131 LGLPELTLGVIP--GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 188
             +PEL  G+    G   L    G S   E++   +S+ +       L++ VV S  LL 
Sbjct: 127 FVMPELKHGIGCSVGAAILGFTHGFSTMQEIIYQCQSLDAPRCVDYRLVNQVVESSALLD 186

Query: 189 VSRLWALDIAAR 200
            +   A  +A+ 
Sbjct: 187 AAITQAHVMASY 198

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A Length = 256

 Score =  185 bits (472), Expect = 5e-54
 Identities = 52/204 (25%), Positives = 91/204 (44%), Gaps = 16/204 (7%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
             +P + ++   D V  +TL  P   NAL+  + +       +A + DDV  +++TG   
Sbjct: 6   ADSPVLLVDT-TDRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGADP 64

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            F  G D+                   +  +     D  KP++ A+ G A+ GGLELA+ 
Sbjct: 65  VFCAGLDLKELG-----------DTTELPDISPKWPDMTKPVIGAINGAAVTGGLELALY 113

Query: 120 CHARIAAPKTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 176
           C   IA+   +       +G++P    + RLP+ VG+  A  M L    +++++  + GL
Sbjct: 114 CDILIASENAKFADTHARVGLMPTWGLSVRLPQKVGVGLARRMSLTGDYLSAQDALRAGL 173

Query: 177 IDAVVTSEELLKVSRLWALDIAAR 200
           +  VV  ++LL  +R  A  I   
Sbjct: 174 VTEVVAHDDLLTAARRVAASIVGN 197

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} Length = 265

 Score =  185 bits (472), Expect = 8e-54
 Identities = 59/203 (29%), Positives = 98/203 (48%), Gaps = 6/203 (2%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
            AA  + +E  +  V I+T+  P   NAL+  +V+     ++E    D ++A +LTG G 
Sbjct: 6   SAARELLVER-DGPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAGS 64

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            +  G D++    V   G    +   ++   + L     KP++AAV G  LGGG E+   
Sbjct: 65  AYCVGGDLSDGWMV-RDGSAPPLDPATIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQ 123

Query: 120 CHARIAAPKTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 176
              R++      GLPE+  G++P      RL R +  +KA+EM+L  + +T+ E +  GL
Sbjct: 124 TDIRVSDEHATFGLPEVQRGLVPGAGSMVRLKRQIPYTKAMEMILTGEPLTAFEAYHFGL 183

Query: 177 IDAVVTSEELLKVSRLWALDIAA 199
           +  VV +   L  +R  A  I  
Sbjct: 184 VGHVVPAGTALDKARSLADRIVR 206

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 Length = 264

 Score =  184 bits (470), Expect = 1e-53
 Identities = 56/204 (27%), Positives = 94/204 (46%), Gaps = 5/204 (2%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
              P +       GV  IT       NA+   +  GL   + +  + + V+A++L G GG
Sbjct: 7   ARYPGLAFAWPRPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGG 65

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            FS G    + +++  + +  L        +V    +  +P+VAAVE +A+G GL LA+ 
Sbjct: 66  VFSAGGSFGLIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALA 125

Query: 120 CHARIAAPKTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 176
               +    T+L    L LGV          P LVG++KA   +LL++ +T EE  +LGL
Sbjct: 126 ADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAKYHLLLNEPLTGEEAERLGL 185

Query: 177 IDAVVTSEELLKVSRLWALDIAAR 200
           +   V  E++ + +   A  +A  
Sbjct: 186 VALAVEDEKVYEKALEVAERLAQG 209

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} Length = 266

 Score =  184 bits (470), Expect = 1e-53
 Identities = 46/204 (22%), Positives = 87/204 (42%), Gaps = 7/204 (3%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
              P +   +   GV  + +  P   NAL   +   +    +EA    DV+ +VL G   
Sbjct: 2   SLHPHLNANL-EGGVLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAEH 60

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            F+ G D+  F       +      V   +++       KP++ AV+G+A+G G+ + + 
Sbjct: 61  DFTAGNDMKDFMGFVQNPNAGPAGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQ 120

Query: 120 CHARIAAPKTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 176
                A       +P ++LG+ P    +Q L +  G  KA E++  +K   +E   + GL
Sbjct: 121 ADLVFADNTALFQIPFVSLGLSPEGGASQLLVKQAGYHKAAELLFTAKKFNAETALQAGL 180

Query: 177 IDAVVTSEELLKVSRLWALDIAAR 200
           ++ +V  E+    ++  A  + A 
Sbjct: 181 VNEIV--EDAYATAQATAQHLTAL 202

>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} Length = 263

 Score =  184 bits (469), Expect = 2e-53
 Identities = 49/208 (23%), Positives = 83/208 (39%), Gaps = 9/208 (4%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG- 58
           M+   V  E+  +    ITL  P   N L   +   L +      +   + +I+L     
Sbjct: 1   MSLSYVHTEI-QNDALYITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHR 59

Query: 59  GRFSGGFDINVFQKVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLEL 116
             FS G  +              + +V   L   V  I    K  VA + G A GGG  +
Sbjct: 60  AYFSSGPRLEDLLICASDQSDVRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNM 119

Query: 117 AMGCHARIAAPKTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWK 173
            + C  RIA  + +       +G+ P    +  LPR++G  + + ++L  K  TSEE  +
Sbjct: 120 MLACDRRIALRRAKFLENFHKMGISPDLGASYFLPRIIGYEQTMNLLLEGKLFTSEEALR 179

Query: 174 LGLIDAVV-TSEELLKVSRLWALDIAAR 200
           LGLI  +    +EL +  + +   ++  
Sbjct: 180 LGLIQEICENKQELQERVKNYLKAVSEG 207

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* Length = 261

 Score =  183 bits (468), Expect = 2e-53
 Identities = 53/206 (25%), Positives = 88/206 (42%), Gaps = 11/206 (5%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           M+   V +    + VA+I        NAL+   +  L     +  +R +++ I+L    G
Sbjct: 1   MSYQYVNVVT-INKVAVIEFNYGRKLNALSKVFIDDLMQALSDL-NRPEIRCIILRAPSG 58

Query: 60  R--FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELA 117
              FS G DI+        G   L  D  +  +  +I+   KPI++ VEG   GG  E+ 
Sbjct: 59  SKVFSAGHDIHELP---SGGRDPLSYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMI 115

Query: 118 MGCHARIAAPKTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 174
           M     IAA  +   +  + LGV     G   L R  G     E++  +  IT++    +
Sbjct: 116 MSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPITAQRALAV 175

Query: 175 GLIDAVVTSEELLKVSRLWALDIAAR 200
           G+++ VV  EEL   +   A  I+ +
Sbjct: 176 GILNHVVEVEELEDFTLQMAHHISEK 201

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A Length = 261

 Score =  183 bits (468), Expect = 2e-53
 Identities = 48/195 (24%), Positives = 79/195 (40%), Gaps = 8/195 (4%)

Query: 13  DGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
           DG   I L       N+L   ++  ++     A + DD K ++L+  G  F  G D   F
Sbjct: 13  DGFTHILLSTKSSENNSLNPEVMREVQSALSTA-AADDSKLVLLSAVGSVFCCGLDFIYF 71

Query: 71  QKVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
            +            ++  +   VN     KKPI+ AV G A+G G  +   C    A  K
Sbjct: 72  IRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEK 131

Query: 129 TQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 185
                P  T G  P    T   P+++G + A EM+L  + +T++E    GL+  V     
Sbjct: 132 AWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPGT 191

Query: 186 LLKVSRLWALDIAAR 200
             +   +   ++A+ 
Sbjct: 192 FTQEVMVRIKELASC 206

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* Length = 260

 Score =  183 bits (467), Expect = 3e-53
 Identities = 71/193 (36%), Positives = 91/193 (47%), Gaps = 8/193 (4%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
           N  V +I L  P   NAL   ++  L    E       V AIVLTG    F+ G DI   
Sbjct: 14  NSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEM 73

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
           Q                    + I   KKP++AAV G ALGGG ELAM C    A  K Q
Sbjct: 74  QNR----TFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQ 129

Query: 131 LGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 187
            G PE+ LG IP   GTQRL R VG S A+EM+L    I++++  + GL+  +   E L+
Sbjct: 130 FGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLV 189

Query: 188 KVSRLWALDIAAR 200
           + +   A  IA  
Sbjct: 190 EEAIQCAEKIANN 202

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 Length = 253

 Score =  183 bits (466), Expect = 3e-53
 Identities = 50/192 (26%), Positives = 91/192 (47%), Gaps = 4/192 (2%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
             VA++ L +P   N L+  +   L    ++  +   V+A+VLTG G  FS G D+   +
Sbjct: 7   GHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLE 66

Query: 72  KVHGAGDVSLMPDVSVEL-VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
           +V   G           + + + +    KP VAAV G A+ GG  LA+ C   +   + +
Sbjct: 67  RVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEAR 126

Query: 131 LGLPELTLGVIP--GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 188
           LG  E+ +G +    +  L R VG   A +++L  + + + E   LGL++ +    + L+
Sbjct: 127 LGYTEVKIGFVAALVSVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRIAPPGKALE 186

Query: 189 VSRLWALDIAAR 200
            ++  A ++A  
Sbjct: 187 EAKALAEEVAKN 198

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} Length = 273

 Score =  183 bits (468), Expect = 4e-53
 Identities = 60/193 (31%), Positives = 89/193 (46%), Gaps = 6/193 (3%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
           +G+A +T+  P V NA     VA + D F  A    +V  IVLTG G   F  G D    
Sbjct: 21  EGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKR 80

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
               G      +P ++V  +  LI    KP++A V+G A+GGG  L + C   IAA    
Sbjct: 81  GH-GGYVGEDQIPRLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAI 139

Query: 131 LGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 187
            G     +G      G+  L R+VG  KA E+  L +   ++E   +GL++ VV  E++ 
Sbjct: 140 FGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQEALDMGLVNTVVPLEKVE 199

Query: 188 KVSRLWALDIAAR 200
             +  W  +I   
Sbjct: 200 DETVQWCKEIMKH 212

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} Length = 265

 Score =  182 bits (465), Expect = 7e-53
 Identities = 60/227 (26%), Positives = 99/227 (43%), Gaps = 11/227 (4%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           DGVA++TL  P   N+  + +   L   ++       V+ IVLTG    F  G  I+   
Sbjct: 15  DGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAFCSGAQISAAA 74

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
                      PD S   V     + + P++AAV G A+G G+ LA+    RI A + + 
Sbjct: 75  ---ETFAAPRNPDFSASPVQPAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAEEGRY 131

Query: 132 GLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 188
            +P++  GV P       LPRLVG + A E++L   S +++   + GL +  + + ++L 
Sbjct: 132 AIPQVRFGVAPDALAHWTLPRLVGTAVAAELLLTGASFSAQRAVETGLANRCLPAGKVLG 191

Query: 189 VSRLWALDIAARRKPW----IRSLHRTDKLGSLSEAREVLKLARLQA 231
            +   A DIA    P      + L    ++  +S A    +      
Sbjct: 192 AALRMAHDIATNVAPESAALTKRLLWDAQMTGMSAAEVAARETADHL 238

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A Length = 272

 Score =  182 bits (465), Expect = 9e-53
 Identities = 60/194 (30%), Positives = 99/194 (51%), Gaps = 7/194 (3%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINV 69
           N G+ ++ +      N+L+  ++  L    +   S   V+ I++       F  G D+  
Sbjct: 19  NRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKE 78

Query: 70  FQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKT 129
             K+  + +V          V+N I +   P +AA++GLALGGGLELA+ C  R+AA   
Sbjct: 79  RAKM-SSSEVGPFVSKIRA-VINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSA 136

Query: 130 QLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 186
           ++GL E  L +IP   GTQRLPR +G+S A E++  ++ +  +E   +GLI  V+   + 
Sbjct: 137 KMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQE 196

Query: 187 LKVSRLWALDIAAR 200
              +   ALD+A  
Sbjct: 197 GDAAYRKALDLARE 210

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} Length = 264

 Score =  181 bits (462), Expect = 2e-52
 Identities = 54/192 (28%), Positives = 82/192 (42%), Gaps = 16/192 (8%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           + V  I L  P   NAL   +V  L     +A      +AIVLTG G  F  G D++   
Sbjct: 29  EAVLTIELQRPERRNALNSQLVEELTQAIRKA-GDGSARAIVLTGQGTAFCAGADLSGDA 87

Query: 72  KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
                 D        +  +   ++    P+V A+ G A+G GL+LAM C  R+ AP    
Sbjct: 88  FAADYPD-------RLIELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFF 140

Query: 132 GLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 188
             P    G+       +RL  LVG  +A  M+L ++ +T+E     G+ + + T  +   
Sbjct: 141 QFPTSKYGLALDNWSIRRLSSLVGHGRARAMLLSAEKLTAEIALHTGMANRIGTLADAQA 200

Query: 189 VSRLWALDIAAR 200
               WA +IA  
Sbjct: 201 ----WAAEIARL 208

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} Length = 290

 Score =  182 bits (463), Expect = 3e-52
 Identities = 54/206 (26%), Positives = 97/206 (47%), Gaps = 12/206 (5%)

Query: 6   VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
           V ++     +A++TL  P   NA+A  ++   K    + +  +DV+A+V+TG G  F  G
Sbjct: 25  VLVDRPRPEIALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKGFCSG 84

Query: 65  FDINVFQKVHGAGDVSLMPDVSVEL------VVNLIEDCKKPIVAAVEGLALGGGLELAM 118
            D      +         P +++        V+  +    +P++AA+ G A+GGGL LA+
Sbjct: 85  ADQKSAGPI-PHIGGLTQPTIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLAL 143

Query: 119 GCHARIAAPKTQLGLPELTLGVIP----GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 174
            C  R+A+         +  G+       +  LPR +G S+A ++ML  + + ++E  ++
Sbjct: 144 ACDVRVASQDAYFRAAGINNGLTASELGLSYLLPRAIGTSRASDIMLTGRDVDADEAERI 203

Query: 175 GLIDAVVTSEELLKVSRLWALDIAAR 200
           GL+   V SE LL+        IA  
Sbjct: 204 GLVSRKVASESLLEECYAIGERIAGF 229

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} Length = 258

 Score =  180 bits (458), Expect = 5e-52
 Identities = 52/203 (25%), Positives = 82/203 (40%), Gaps = 6/203 (2%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
               RVT E     + +I L      NA    ++A L     E    ++ +  VL  +G 
Sbjct: 9   SGPGRVTREQ-RGHLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLFAHGE 67

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            F+ G D+        A      PD  V+    +     KP+V AV+G     G+EL + 
Sbjct: 68  HFTAGLDLMELAP-KLAASGFRYPDGGVDPWGVVQPRRSKPLVVAVQGTCWTAGIELMLN 126

Query: 120 CHARIAAPKTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 176
               +AA  T+    E+  G+ P    T R PR  G + A+  +L      ++E  ++ L
Sbjct: 127 ADIAVAARGTRFAHLEVLRGIPPLGGSTVRFPRAAGWTDAMRYILTGDEFDADEALRMRL 186

Query: 177 IDAVVTSEELLKVSRLWALDIAA 199
           +  VV   E L  +  +A  IA 
Sbjct: 187 LTEVVEPGEELARALEYAERIAR 209

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} Length = 278

 Score =  180 bits (460), Expect = 6e-52
 Identities = 57/204 (27%), Positives = 94/204 (46%), Gaps = 8/204 (3%)

Query: 2   AAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           + P   +E       I+T+  P   NAL+  ++  + + ++   +  D++  +LTG GG 
Sbjct: 18  SGPDALVEQ-RGHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAGGY 76

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL--IEDCKKPIVAAVEGLALGGGLELAM 118
           F  G D+    K    GD           +  L      KKP++AAVEG A+ GG E+  
Sbjct: 77  FCAGMDLKAATK-KPPGDSFKDGSYDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQ 135

Query: 119 GCHARIAAPKTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLG 175
           G   R+AA   + G+ E    + P      RL R +  + A +++L  + IT+ E  ++G
Sbjct: 136 GTDIRVAAESAKFGISEAKWSLYPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEMG 195

Query: 176 LIDAVVTSEELLKVSRLWALDIAA 199
           L+  VV   + L  +   A  IAA
Sbjct: 196 LVGHVVPDGQALTKALEIAEIIAA 219

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} Length = 274

 Score =  180 bits (458), Expect = 8e-52
 Identities = 47/209 (22%), Positives = 92/209 (44%), Gaps = 11/209 (5%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
            +   +  EV +   A ITL  P   NAL+  ++  L+  + EA + D V  +V+TG G 
Sbjct: 8   DSFDTIKYEV-DGHTATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTGR 66

Query: 60  RFSGGFDINVFQK-----VHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGL 114
            F  G D+    +            +     + +          KP++ AV G+  G G+
Sbjct: 67  AFCSGADVKEIPEDGKVIYERPYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAGM 126

Query: 115 ELAMGCHARIAAPKTQLGLPELTLGVIP--GTQRLPRLVGLSKAIEMML--LSKSITSEE 170
           +        IA+ +     P +++G++      R+ R++  S A+ M L    + ++++ 
Sbjct: 127 DWVTTTDIVIASEQATFFDPHVSIGLVAGRELVRVSRVLPRSIALRMALMGKHERMSAQR 186

Query: 171 GWKLGLIDAVVTSEELLKVSRLWALDIAA 199
            ++LGLI  +V  + LL+ +   A  + +
Sbjct: 187 AYELGLISEIVEHDRLLERAHEIADIVNS 215

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} Length = 256

 Score =  178 bits (454), Expect = 2e-51
 Identities = 51/204 (25%), Positives = 89/204 (43%), Gaps = 6/204 (2%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
            +   + ++  ++ V  +TL  P   NA    +         +A     V  ++LTG+G 
Sbjct: 3   GSMVTLQIDD-DNRVRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSGR 61

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            FS G D+   Q                  ++  +    KP++ AV GL +G G  +   
Sbjct: 62  GFSAGTDLAEMQA-RITDPNFSEGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGY 120

Query: 120 CHARIAAPKTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 176
                 +   +L  P  +LGV P    +  LP+LVG   A  +++ S+ I +EE  ++GL
Sbjct: 121 ADLAFMSSTARLKCPFTSLGVAPEAASSYLLPQLVGRQNAAWLLMSSEWIDAEEALRMGL 180

Query: 177 IDAVVTSEELLKVSRLWALDIAAR 200
           +  + + EELL  +R  A  +AA+
Sbjct: 181 VWRICSPEELLPEARRHAEILAAK 204

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 Length = 291

 Score =  179 bits (456), Expect = 2e-51
 Identities = 47/195 (24%), Positives = 79/195 (40%), Gaps = 8/195 (4%)

Query: 13  DGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
           DG   I L       NAL   ++  + +    A + DD K ++ +  G  F  G D   F
Sbjct: 31  DGFTQIVLSTRSTEKNALNTEVIKEIVNALNSA-AADDSKLVLFSAAGSVFCCGLDFGYF 89

Query: 71  QKVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
            K       +   ++   +   VN     KKPIV +V G A+G G  +   C    A  K
Sbjct: 90  VKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEK 149

Query: 129 TQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 185
                P  T G  P    +   P+++G + A EM++  + +T+ E    GL+  V  +  
Sbjct: 150 AWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGT 209

Query: 186 LLKVSRLWALDIAAR 200
             +   +   ++A+ 
Sbjct: 210 FTQEVMIQIKELASY 224

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} PDB: 3r9s_A 3r0o_A Length = 267

 Score =  178 bits (453), Expect = 4e-51
 Identities = 60/202 (29%), Positives = 91/202 (45%), Gaps = 9/202 (4%)

Query: 3   APRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR- 60
           AP    E     V +IT+  P   NA+   +  G+ D  EEA    +V+A+VLTG G + 
Sbjct: 8   APGALAER-RGNVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKS 66

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           F  G D+    +          P+      V       KP +AAV G ALGGG ELA+  
Sbjct: 67  FCAGADLKAIAR-RENLYHPDHPEWGFAGYV--RHFIDKPTIAAVNGTALGGGTELALAS 123

Query: 121 HARIAAPKTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 177
              +A  + Q GLPE+  G+I    G  R+   +    A+ ++L  + +++      GLI
Sbjct: 124 DLVVADERAQFGLPEVKRGLIAAAGGVFRIAEQLPRKVAMRLLLTGEPLSAAAARDWGLI 183

Query: 178 DAVVTSEELLKVSRLWALDIAA 199
           + VV +  +L  +   A  I  
Sbjct: 184 NEVVEAGSVLDAALALASAITV 205

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} Length = 263

 Score =  177 bits (451), Expect = 5e-51
 Identities = 52/206 (25%), Positives = 86/206 (41%), Gaps = 6/206 (2%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           ++   +  EV ++GV  +TL   P + L+  ++A L D    A   D V  +V+ G G  
Sbjct: 3   LSQDGLLGEVLSEGVLTLTLGRAPAHPLSRAMIAALHDALRRAMGDDHVHVLVIHGPGRI 62

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSV----ELVVNLIEDCKKPIVAAVEGLALGGGLEL 116
           F  G D+    +     D        +      ++  +  C KP +A VEG+A   GL+L
Sbjct: 63  FCAGHDLKEIGRHRADPDEGRAFVTDLFEACSALMLDLAHCPKPTIALVEGIATAAGLQL 122

Query: 117 AMGCHARIAAPKTQLGLPELTLGVIPGT--QRLPRLVGLSKAIEMMLLSKSITSEEGWKL 174
              C    A+P  +  LP +  G    T    + R++G     EM L   +  ++     
Sbjct: 123 MAACDLAYASPAARFCLPGVQNGGFCTTPAVAVSRVIGRRAVTEMALTGATYDADWALAA 182

Query: 175 GLIDAVVTSEELLKVSRLWALDIAAR 200
           GLI+ ++    L       A  +AAR
Sbjct: 183 GLINRILPEAALATHVADLAGALAAR 208

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp} Length = 276

 Score =  177 bits (451), Expect = 9e-51
 Identities = 48/192 (25%), Positives = 80/192 (41%), Gaps = 6/192 (3%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
           +  + IITL  P   N++   +  GL   ++  T     +A V+TG G  FS G D    
Sbjct: 35  DGALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAGRAFSAGGDFGYL 94

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
           +++    D+          +V  +  C+ P+VAAV G A+G G  L         A    
Sbjct: 95  KELSADADLRAKTIRDGREIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAENAY 154

Query: 131 LGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 187
           L  P + +G++    G    P  + L  A E  L    I+++   +LGL + V   ++ +
Sbjct: 155 LADPHVQVGLVAADGGPLTWPLHISLLLAKEYALTGTRISAQRAVELGLANHVA--DDPV 212

Query: 188 KVSRLWALDIAA 199
             +   A  I  
Sbjct: 213 AEAIACAKKILE 224

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} Length = 265

 Score =  176 bits (450), Expect = 1e-50
 Identities = 56/202 (27%), Positives = 91/202 (45%), Gaps = 12/202 (5%)

Query: 2   AAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
             P V +E   D + IIT+  P   N++   +   L D  +   +   +   +LTG GG 
Sbjct: 13  TEPEVLVEQ-RDRILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGAGGS 71

Query: 61  FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
           F  G D+  F      G+      V    +        KP++AAVEG AL GG ELA+  
Sbjct: 72  FCAGMDLKAFA----RGE---NVVVEGRGLGFTERPPAKPLIAAVEGYALAGGTELALAT 124

Query: 121 HARIAAPKTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 177
              +AA  +  G+PE+  G++    G  RLP  +  + A+E+ L   ++++E    LG++
Sbjct: 125 DLIVAARDSAFGIPEVKRGLVAGGGGLLRLPERIPYAIAMELALTGDNLSAERAHALGMV 184

Query: 178 DAVVTSEELLKVSRLWALDIAA 199
           + +      L  +   A  I A
Sbjct: 185 NVLAEPGAALDAAIALAEKITA 206

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A Length = 305

 Score =  178 bits (452), Expect = 1e-50
 Identities = 49/219 (22%), Positives = 87/219 (39%), Gaps = 20/219 (9%)

Query: 1   MAAPRVTMEVGNDGVAIITL-----INPPVNALAIPIVAGLKDKFEEA-----TSRDDVK 50
            +  R+  E     V  I +     INP     +  +V  +            T+     
Sbjct: 29  GSTLRIIEEP-QRDVYWIHMHADLAINPGRACFSTRLVDDITGYQTNLGQRLNTAGVLAP 87

Query: 51  AIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL-----IEDCKKPIVAAV 105
            +VL  +   F+ G D+ +F ++   GD + + D +   V  +         +   +A V
Sbjct: 88  HVVLASDSDVFNLGGDLALFCQLIREGDRARLLDYAQRCVRGVHAFHVGLGARAHSIALV 147

Query: 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLL 162
           +G ALGGG E A+ CH  IA     +GLPE+   + PG      + + +    A ++ML 
Sbjct: 148 QGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDLFPGMGAYSFMCQRISAHLAQKIMLE 207

Query: 163 SKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARR 201
               ++E+   +GL+D VV   + +          + R 
Sbjct: 208 GNLYSAEQLLGMGLVDRVVPRGQGVAAVEQVI-RESKRT 245

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} Length = 279

 Score =  177 bits (450), Expect = 1e-50
 Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 7/194 (3%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           DGVA +TL  P   NAL     A L+D   E + R  V+A+VL G G  F  G D++   
Sbjct: 25  DGVATVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSGGDVDEII 84

Query: 72  KVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKT 129
               + D + + D +     VV  + +C  P++AA+ G+A G G  LA+    R+A P T
Sbjct: 85  GATLSMDTARLLDFNRMTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPST 144

Query: 130 QLGLPELTLGVIP----GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 185
           +       +G+          LPR+VGL  A  +++L  ++ + E  ++GLI  +     
Sbjct: 145 RFAFLFTRVGLSGGDMGAAYLLPRVVGLGHATRLLMLGDTVRAPEAERIGLISELTEEGR 204

Query: 186 LLKVSRLWALDIAA 199
             + +R  A  +A 
Sbjct: 205 ADEAARTLARRLAD 218

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* Length = 269

 Score =  175 bits (446), Expect = 3e-50
 Identities = 55/195 (28%), Positives = 96/195 (49%), Gaps = 7/195 (3%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
            DGVA IT+  P   NAL++  +  + D    A   D V A+++TG    F  GF +   
Sbjct: 10  EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREI 69

Query: 71  QKVHGAGDVSLMPDVSVEL---VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAP 127
               G   V     ++      +++ I   K+P++AA+ G+A GGGL +++     I A 
Sbjct: 70  PLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICAD 129

Query: 128 KTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 184
             +      T+G+      +  L R+VG+ +A+E+ML ++++  EE    GL+  V   +
Sbjct: 130 SAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRVYPKD 189

Query: 185 ELLKVSRLWALDIAA 199
           E  +V+   A ++AA
Sbjct: 190 EFREVAWKVARELAA 204

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} Length = 275

 Score =  175 bits (447), Expect = 3e-50
 Identities = 57/198 (28%), Positives = 90/198 (45%), Gaps = 11/198 (5%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR------FSGGF 65
            G+A I +  P   NA     V  L D F  A   + +  ++LTG G        F  G 
Sbjct: 18  GGIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGG 77

Query: 66  DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIA 125
           D +V  +  G  D    P ++V  +  LI    K ++A V G A+GGG  L + C   IA
Sbjct: 78  DQSVRGE-GGYIDDQGTPRLNVLDLQRLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIA 136

Query: 126 APKTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 182
           A     G     +G      G+  L R+VG  KA E+  L +  +++E  ++G+++ VV 
Sbjct: 137 ADNAIFGQTGPKVGSFDGGFGSSYLARIVGQKKAREIWYLCRQYSAQEAERMGMVNTVVP 196

Query: 183 SEELLKVSRLWALDIAAR 200
            + L +    WA +I ++
Sbjct: 197 VDRLEEEGIQWAKEILSK 214

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D Length = 263

 Score =  174 bits (443), Expect = 7e-50
 Identities = 35/200 (17%), Positives = 81/200 (40%), Gaps = 7/200 (3%)

Query: 6   VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
           +      +G+  + +                  D F + +   D + ++LTG+G  +   
Sbjct: 25  LHFHRDENGILEVRMHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVILTGSGDAWMAE 84

Query: 65  FDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARI 124
            D      V    +         +++ N + D + P+++AV G AL    E  +     +
Sbjct: 85  IDFPSLGDVTNPREWDKTYWEGKKVLQN-LLDIEVPVISAVNGAALLHS-EYILTTDIIL 142

Query: 125 AAPKTQL-GLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 180
           A+  T    +P L  G++PG       P  +GL +    +   + +T+++ ++L ++  V
Sbjct: 143 ASENTVFQDMPHLNAGIVPGDGVHILWPLALGLYRGRYFLFTQEKLTAQQAYELNVVHEV 202

Query: 181 VTSEELLKVSRLWALDIAAR 200
           +   +L++ +   A  +A +
Sbjct: 203 LPQSKLMERAWEIARTLAKQ 222

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} Length = 257

 Score =  172 bits (439), Expect = 3e-49
 Identities = 54/193 (27%), Positives = 94/193 (48%), Gaps = 7/193 (3%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
              VA +TL  P   NA    + A +    ++A +  +V+ +V+TG G  F  G D++  
Sbjct: 10  KGQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGV 69

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
                  D   +       ++  +   +KP+VAAV G A G G+ LA+ C  R+ + K  
Sbjct: 70  T---EEMDHGDVLRSRYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKAS 126

Query: 131 LGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 187
                + +G++P       LPRLVG +KA+E+ +L + +T+EE   LGL   V+   +  
Sbjct: 127 FAPAFIHVGLVPDAGHLYYLPRLVGRAKALELAVLGEKVTAEEAAALGLATKVIPLSDWE 186

Query: 188 KVSRLWALDIAAR 200
           +  + +A  ++A 
Sbjct: 187 EEVKQFAERLSAM 199

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A Length = 262

 Score =  172 bits (439), Expect = 3e-49
 Identities = 58/201 (28%), Positives = 92/201 (45%), Gaps = 9/201 (4%)

Query: 3   APRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF 61
            P V +E     V  + L  P   NA+  P  A L   F E  +  +    VL G+ G F
Sbjct: 10  QPAVRVEK-AGPVTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGDNGTF 68

Query: 62  SGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
             G D+       G  ++       +           KP++AA+ G A+ GG+ELA+ C 
Sbjct: 69  CAGADLKAMGTDRGN-ELHPHGPGPMGPS---RLRLSKPVIAAISGHAVAGGIELALWCD 124

Query: 122 ARIAAPKTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 178
            R+      LG+     GV     GT RLPRL+G S+A++++L  + + + E   +GL++
Sbjct: 125 LRVVEEDAVLGVFCRRWGVPLIDGGTIRLPRLIGHSRAMDLILTGRPVHANEALDIGLVN 184

Query: 179 AVVTSEELLKVSRLWALDIAA 199
            VV   +  + +   A +IAA
Sbjct: 185 RVVARGQAREAAETLAAEIAA 205

>3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A Length = 279

 Score =  173 bits (440), Expect = 3e-49
 Identities = 53/205 (25%), Positives = 86/205 (41%), Gaps = 6/205 (2%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
                +  +V +D +A ITL  P   NA    ++  L   +  A   +DV  IVL  NG 
Sbjct: 17  RTEMYIDYDV-SDRIATITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANGK 75

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL---IEDCKKPIVAAVEGLALGGGLEL 116
            FS G D+     V     +  +        +       +  KP +AAV+G  + GGL L
Sbjct: 76  HFSAGHDLRGGGPVPDKLTLEFIYAHESRRYLEYSLRWRNVPKPSIAAVQGRCISGGLLL 135

Query: 117 AMGCHARIAAPKTQLGLPELTLGV-IPGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLG 175
              C   IAA       P + + +           +G  KA E++   +++T+EE  + G
Sbjct: 136 CWPCDLIIAAEDALFSDPVVLMDIGGVEYHGHTWELGPRKAKEILFTGRAMTAEEVAQTG 195

Query: 176 LIDAVVTSEELLKVSRLWALDIAAR 200
           +++ VV  + L   +R  A +IA  
Sbjct: 196 MVNRVVPRDRLDAETRALAGEIAKM 220

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} Length = 298

 Score =  173 bits (441), Expect = 4e-49
 Identities = 64/234 (27%), Positives = 98/234 (41%), Gaps = 14/234 (5%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
            A   V  E    GVAIIT       NA    + AG     + A +   ++ IVLTG G 
Sbjct: 26  DAQDAVLYEATPGGVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGR 85

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVS------VELVVNLIEDCKKPIVAAVEGLALGGG 113
            F  G  +       G          +       E   + +   +KP++AA+ G  +G G
Sbjct: 86  GFCAGAYLGSADAAAGYDKTMAKAKDANLADLVGERPPHFVTMLRKPVIAAINGPCVGIG 145

Query: 114 LELAMGCHARIAAPKTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEE 170
           L  A+ C  R AA   +        G+I     +  LPRL   + A++++L  ++  +EE
Sbjct: 146 LTQALMCDVRFAAAGAKFAAVFARRGLIAEFGISWILPRLTSWAVALDLLLSGRTFLAEE 205

Query: 171 GWKLGLIDAVVTSEELLKVSRLWALDIAARRKP----WIRSLHRTDKLGSLSEA 220
             +LGL+  VVT E+L+  +  +A DIA    P     I+     D    + EA
Sbjct: 206 AAQLGLVKEVVTPEQLMPRALEYAEDIARYCSPSSMAVIKRQVYGDATRDVVEA 259

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} Length = 268

 Score =  171 bits (436), Expect = 9e-49
 Identities = 52/204 (25%), Positives = 95/204 (46%), Gaps = 7/204 (3%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           M+   +  E+  D V ++T+      NA    ++  ++ + + A +  +V+ IVL  NG 
Sbjct: 1   MSLSDLLYEI-QDKVGLLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGK 59

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELA 117
            FS G D+   Q +    +   + D S+ L  ++  I    KP +A V+G A GGG  LA
Sbjct: 60  HFSAGADLTWMQSMANFTEEENLED-SLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLA 118

Query: 118 MGCHARIAAPKTQLGLPELTLGVIP--GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLG 175
             C   IA+   +    E+ LG+IP   +  + R +G   A  + + ++   +   + L 
Sbjct: 119 AACDIAIASTSARFCFSEVKLGLIPAVISPYVVRAIGERAAKMLFMSAEVFDATRAYSLN 178

Query: 176 LIDAVVTSEELLKVSRLWALDIAA 199
           L+   V  + LL+ +  +A  I+ 
Sbjct: 179 LVQHCVPDDTLLEFTLKYASQISN 202

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} Length = 256

 Score =  171 bits (435), Expect = 1e-48
 Identities = 62/201 (30%), Positives = 94/201 (46%), Gaps = 13/201 (6%)

Query: 3   APRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF 61
           A  V +E   D V +IT+  P   NA+   +  GL    ++  S  D+   ++TG GG F
Sbjct: 6   ADEVLIEQ-RDRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGNF 64

Query: 62  SGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
             G D+  F    G   +S        +        +KPI+AAVEG AL GG EL + C 
Sbjct: 65  CAGMDLKAFVS--GEAVLSERGLGFTNV------PPRKPIIAAVEGFALAGGTELVLSCD 116

Query: 122 ARIAAPKTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 178
             +A    + G+PE+  G++    G  RLP  +    A+E+ L  +S T+E+  K G I+
Sbjct: 117 LVVAGRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQVAMELALTGESFTAEDAAKYGFIN 176

Query: 179 AVVTSEELLKVSRLWALDIAA 199
            +V   + L  +   A  I A
Sbjct: 177 RLVDDGQALDTALELAAKITA 197

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A Length = 257

 Score =  170 bits (433), Expect = 1e-48
 Identities = 38/196 (19%), Positives = 75/196 (38%), Gaps = 12/196 (6%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
           + GV ++T+                L   F +     + K ++LTG G  F    D   F
Sbjct: 23  DGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSF 82

Query: 71  QKVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
                 G      ++  E   ++N +   + P++AAV G  +    E+ +     +AA  
Sbjct: 83  N----LGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNG-PVTNAPEIPVMSDIVLAAES 137

Query: 129 TQLG-LPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 184
                 P    G++P        P ++G ++    +L  + + +      G ++ V++ +
Sbjct: 138 ATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDARTALDYGAVNEVLSEQ 197

Query: 185 ELLKVSRLWALDIAAR 200
           ELL  +   A  IA +
Sbjct: 198 ELLPRAWELARGIAEK 213

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} Length = 255

 Score =  168 bits (428), Expect = 8e-48
 Identities = 50/204 (24%), Positives = 93/204 (45%), Gaps = 13/204 (6%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
            +   +++E  +  V  I L  P   NA+  P++  L     +A + + V+A++LTG G 
Sbjct: 3   GSMNGISVEH-DGAVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGR 61

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            F  G D+        A         +   VV  I    KP++A V G A+G G  LA+ 
Sbjct: 62  AFCSGGDLTGGDTAGAAD--------AANRVVRAITSLPKPVIAGVHGAAVGFGCSLALA 113

Query: 120 CHARIAAPKTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 176
           C   +AAP +   L    +G++P    +  LP L+G ++   M + ++ I++   ++ G+
Sbjct: 114 CDLVVAAPASYFQLAFTRVGLMPDGGASALLPLLIGRARTSRMAMTAEKISAATAFEWGM 173

Query: 177 IDAVVTSEELLKVSRLWALDIAAR 200
           I  + +++E   V       ++  
Sbjct: 174 ISHITSADEYESVLTDVLRSVSGG 197

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* Length = 440

 Score =  173 bits (441), Expect = 1e-47
 Identities = 51/225 (22%), Positives = 83/225 (36%), Gaps = 27/225 (12%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-- 57
           +    V +E   DGVA +T+      NA     V  ++   + A     V+  +L G   
Sbjct: 164 VEMEAVHLER-RDGVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVM 222

Query: 58  ------GGR-FSGGFDINVFQK--------------VHGAGDVSLMPDVSVELVVNLIED 96
                 G R FS G ++    +               +    V  +              
Sbjct: 223 SHPRYRGKRVFSAGINLKYLSQGGISLVDFLMRRELGYIHKLVRGVLTNDDRPGWWHSPR 282

Query: 97  CKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIP--GTQRLPRLVGLS 154
            +KP VAAV+G A+GGG +L +     +A+      LP    G+IP     RL R  G  
Sbjct: 283 IEKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKEGIIPGAANLRLGRFAGPR 342

Query: 155 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAA 199
            + +++L  + I ++E     L+D VV  +EL          +  
Sbjct: 343 VSRQVILEGRRIWAKEPEARLLVDEVVEPDELDAAIERSLTRLDG 387

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 Length = 280

 Score =  167 bits (426), Expect = 3e-47
 Identities = 52/194 (26%), Positives = 79/194 (40%), Gaps = 7/194 (3%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           DG+  I    P   NA+   +   +    + A S+DD    VLTGNG  +S G D+  F 
Sbjct: 34  DGITKIMFNRPKKKNAINTEMYHEIMRALKAA-SKDDSIITVLTGNGDYYSSGNDLTNFT 92

Query: 72  KVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKT 129
            +   G      + +V L   V    D  KP++A V G A+G  + L     A  A+ + 
Sbjct: 93  DIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRA 152

Query: 130 QLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 186
               P   LG  P    +   P+++  +KA EM++  K +T+ E    GL+  V      
Sbjct: 153 TFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDSTF 212

Query: 187 LKVSRLWALDIAAR 200
            K         A  
Sbjct: 213 QKEVWTRLKAFAKL 226

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A Length = 334

 Score =  164 bits (417), Expect = 2e-45
 Identities = 54/210 (25%), Positives = 85/210 (40%), Gaps = 21/210 (10%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-------FSG 63
           +D    +    P V NA     V  L    + A    DV  ++LTGNG         F  
Sbjct: 64  DDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCS 123

Query: 64  GFDINVFQK---------VHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGL 114
           G D  +  +              DV+    + +  V  LI    K ++  V G A GGG 
Sbjct: 124 GGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGH 183

Query: 115 ELAMGCHARIAAPKT-QLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEE 170
            L + C   +A+ +  +    +  +G      G+  L R VG   A E+  L ++ T+E+
Sbjct: 184 SLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYTAEQ 243

Query: 171 GWKLGLIDAVVTSEELLKVSRLWALDIAAR 200
             ++G ++AV    EL  V   WA +I A+
Sbjct: 244 MHQMGAVNAVAEHAELETVGLQWAAEINAK 273

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A Length = 333

 Score =  163 bits (415), Expect = 3e-45
 Identities = 45/216 (20%), Positives = 75/216 (34%), Gaps = 29/216 (13%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
           D VA IT   P   NA+       L    E A    DV  I+++G G  F  GFD++ + 
Sbjct: 43  DRVARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRGEGFCAGFDLSAYA 102

Query: 72  KVHGAGDVSLMPDVSVEL----------------------------VVNLIEDCKKPIVA 103
           +   +       + +V                                  +  C KP V 
Sbjct: 103 EGSSSAGGGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPTVV 162

Query: 104 AVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGTQRLPRLVGLSKAIEMMLLS 163
            + G  + GG ++A+     IAA   ++G P + +  +P        +G  +A  ++   
Sbjct: 163 KIHGYCVAGGTDIALHADQVIAAADAKIGYPPMRVWGVPAAGLWAHRLGDQRAKRLLFTG 222

Query: 164 KSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAA 199
             IT  +  + GL        +L   +      IAA
Sbjct: 223 DCITGAQAAEWGLAVEAPDPADLDARTERLVERIAA 258

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A Length = 280

 Score =  160 bits (407), Expect = 1e-44
 Identities = 45/220 (20%), Positives = 69/220 (31%), Gaps = 21/220 (9%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
               +++  +      II LINP   NAL       L +  E A    DV   ++  +G 
Sbjct: 6   RQNEKISYRI-EGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGR 64

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVEL---------VVNLIEDCKKPIVAAVEGLAL 110
            FS G D     K  G        + S  +         V +      K ++  + G A+
Sbjct: 65  FFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAI 124

Query: 111 GGGLELAMGCHARIAAP-KTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSI 166
           G    L   C    +   K  L  P   LG+I     T  LP   G +   E ++ +K  
Sbjct: 125 GLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPF 184

Query: 167 TSEEGWKLGLIDAVVTSEELL------KVSRLWALDIAAR 200
             +   + G I                KV       +   
Sbjct: 185 KYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGL 224

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A Length = 275

 Score =  160 bits (406), Expect = 1e-44
 Identities = 47/203 (23%), Positives = 89/203 (43%), Gaps = 15/203 (7%)

Query: 13  DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
             V  + L  P   NA+       L + F++ +   D +A+V++G G  F+ G D+    
Sbjct: 12  KHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMA 71

Query: 72  KVHGAGDVSLMPDVSVEL---------VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHA 122
                     +  ++  L            +IE C KP++AA+ G  +GGG++L   C  
Sbjct: 72  SDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDI 131

Query: 123 RIAAPKTQLGLPELTLGVIP---GTQRLPRLVG-LSKAIEMMLLSKSITSEEGWKLGLID 178
           R         + E+ +G+       QRLP+++G  S   E+   ++ + ++E    GL+ 
Sbjct: 132 RYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLVS 191

Query: 179 AVV-TSEELLKVSRLWALDIAAR 200
            V    + +L  +   A DI+++
Sbjct: 192 RVFPDKDVMLNAAFALAADISSK 214

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} Length = 286

 Score =  160 bits (406), Expect = 2e-44
 Identities = 48/204 (23%), Positives = 89/204 (43%), Gaps = 6/204 (2%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           M+ P +  +    GV  +TL  P   NAL+  ++A L + F      + V+A+VL  +G 
Sbjct: 22  MSEPLLLQDRDERGVVTLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASGK 81

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            F  G D+   +          +     +++   I+    P++A V G+A   G +L   
Sbjct: 82  AFCAGHDLKEMRAEPSREYYEKLFARCTDVM-LAIQRLPAPVIARVHGIATAAGCQLVAM 140

Query: 120 CHARIAAPKTQLGLPELTLGVIPGT---QRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 176
           C   +A    +  +  + +G+   T     L R VG   A EM++  + +++++   LGL
Sbjct: 141 CDLAVATRDARFAVSGINVGLFCSTPGVA-LSRNVGRKAAFEMLVTGEFVSADDAKGLGL 199

Query: 177 IDAVVTSEELLKVSRLWALDIAAR 200
           ++ VV  + L          I A+
Sbjct: 200 VNRVVAPKALDDEIEAMVSKIVAK 223

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} Length = 267

 Score =  156 bits (396), Expect = 3e-43
 Identities = 43/202 (21%), Positives = 68/202 (33%), Gaps = 7/202 (3%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           +    + +      V  IT   P   N +   ++        +      V  +VL G   
Sbjct: 4   VTYQTIKVRF-QASVCYITFHRPEANNTINDTLIEECLQVLNQC-ETSTVTVVVLEGLPE 61

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            F  G D     +    G         +  +   ++      ++ V G    GGL     
Sbjct: 62  VFCFGADFQEIYQEMKRGRKQASSQEPLYDLWMKLQTGPYVTISHVRGKVNAGGLGFVSA 121

Query: 120 CHARIAAPKTQLGLPELTLGVIP--GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 177
               IA       L EL  G+ P      L R +G  KA  M L++K I+ +E  + GLI
Sbjct: 122 TDIAIADQTASFSLSELLFGLYPACVLPFLIRRIGRQKAHYMTLMTKPISVQEASEWGLI 181

Query: 178 DAVVTSEELLKVSRLWALDIAA 199
           DA     ++L   R   L +  
Sbjct: 182 DAFDAESDVL--LRKHLLRLRR 201

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} Length = 287

 Score =  153 bits (389), Expect = 4e-42
 Identities = 55/204 (26%), Positives = 91/204 (44%), Gaps = 6/204 (2%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
            + PR T     DG+  I L NP   N L++ ++  L+         +D+K I+++  G 
Sbjct: 29  ESEPRPTSARQLDGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGP 88

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
            FS G D+    +  G  D       +   V+  I +   P++A V GLA   G +L   
Sbjct: 89  VFSSGHDLKELTEEQGR-DYHAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVAS 147

Query: 120 CHARIAAPKTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 176
           C   +A+ K+    P + +G+     G   L R V    A+EM+   + I+++E    GL
Sbjct: 148 CDIAVASDKSSFATPGVNVGLFCSTPGVA-LARAVPRKVALEMLFTGEPISAQEALLHGL 206

Query: 177 IDAVVTSEELLKVSRLWALDIAAR 200
           +  VV   EL + +   A  IA+ 
Sbjct: 207 LSKVVPEAELQEETMRIARKIASL 230

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556

 Score =  159 bits (404), Expect = 8e-42
 Identities = 57/320 (17%), Positives = 108/320 (33%), Gaps = 33/320 (10%)

Query: 12  NDGVAIITL-----------INPPVNALAIPIVAGLKDKFEEATS-RDDVKAIVLTGNGG 59
           N  VA + +               +N+  + +   L D  +       +V+ +VLT    
Sbjct: 28  NGPVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKD 87

Query: 60  R-FSGGFDINVFQK--VHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLEL 116
           R F  G +I +          +     + +   + +         +AAV G   GGG EL
Sbjct: 88  RVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGLEDSSRHSGLKFLAAVNGACAGGGYEL 147

Query: 117 AMGCHARIAA--PKTQLGLPELT-LGVIP---GTQRL--PRLVGLSKAIEMMLLSKSITS 168
           A+ C          + + LPE+  LGV+P   G  R+   R V   +A     + + +  
Sbjct: 148 ALACDEIYLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRKVRHDRADIFCTVVEGVRG 207

Query: 169 EEGWKLGLIDAVVTSEELLKVSRLWALDIAAR-------RKPWIRSLHRTDKLGSLSEAR 221
           E      L+D VV   +  +  +  AL++AA+       +   +  + RTD+   L+   
Sbjct: 208 ERAKAWRLVDEVVKPNQFDQAIQARALELAAQSDRPAHAQGVPLTRIERTDREDGLTYKT 267

Query: 222 ---EVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRG 278
               + +  R+          +  A +D I     +       +E       +  +    
Sbjct: 268 LDVTIDRAKRIATFTAKAPQTEPPASIDAIVAAGANWWPLKFAREFDDAILSMRTNELAV 327

Query: 279 LVHVFFAQRATSKVPNVTDI 298
              VF  +     +      
Sbjct: 328 GTWVFRTEGDARHLLAADAS 347

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556

 Score = 53.1 bits (127), Expect = 2e-07
 Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 15/106 (14%)

Query: 90  VVNLIEDCKKPIVAAVE-GLALGGGL-ELAMGCHARI-------AAPKTQLGLPELTLGV 140
            +  I+   + + A +E G    G   ELA                 +  + L E+  G+
Sbjct: 367 TLARIDVSSRSLFALIEPGSCFAGTFAELAFAADRTYMAALPANEDEEPAITLSEVNFGL 426

Query: 141 IP---GTQRLP-RLVGLSKAIEMML--LSKSITSEEGWKLGLIDAV 180
            P      RL  R    ++ ++ +   + ++I   E  +LGL+ A 
Sbjct: 427 YPMVTHQSRLARRFYEETEPLDAVRSRIGQAIKPVEAERLGLVTAS 472

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} Length = 267

 Score =  146 bits (370), Expect = 1e-39
 Identities = 49/206 (23%), Positives = 84/206 (40%), Gaps = 11/206 (5%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           +         G   VA +TL +P   NAL+  +V+ L     +A+S   V+ +VL   GG
Sbjct: 8   LVDYAGPAATG-GPVARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGG 66

Query: 60  RFSGGFDINVFQKVHGAGD-VSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLEL 116
            F  G D++             +  + + E+  ++  I + + P++AA++G    GG  L
Sbjct: 67  TFCAGADLSEAGSGGSPSSAYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGL 126

Query: 117 AMGCHARIAAPKTQLGLPELTLGVIPGT---QRLPRLVGLSKAIEMMLLSKSITSEEGWK 173
              C   +A P++   L E  +GV P       LP+L     A    L  +   +    +
Sbjct: 127 VGACDIAVAGPRSSFALTEARIGVAPAIISLTLLPKL-SARAAARYYLTGEKFDARRAEE 185

Query: 174 LGLIDAVVTSEELLKVSRLWALDIAA 199
           +GLI      E+L         D+  
Sbjct: 186 IGLITMAA--EDLDAAIDQLVTDVGR 209

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis} Length = 407

 Score = 92.9 bits (231), Expect = 3e-20
 Identities = 41/200 (20%), Positives = 83/200 (41%), Gaps = 15/200 (7%)

Query: 1   MAAPRVTMEV----GNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLT 55
            A   V  +         V ++TL      NAL + +V  +  +         +  +VL 
Sbjct: 34  FATQNVVFQTLATASGKLVGVVTLNVEKALNALDLDMVRAMTVQLNLWKKDPLIACVVLD 93

Query: 56  GNGGR-FSGGFDINVFQKVHGAGDVSLMPDV----SVELVVN-LIEDCKKPIVAAVEGLA 109
           G+G + F  G D+        A    +          E  ++ L+    KP++   +G+ 
Sbjct: 94  GSGEKAFCAGGDVRALYHASVAAKGQVTEVAKVFFEEEYRLDYLLHTYGKPVLVWGDGIV 153

Query: 110 LGGGLELAMGCHARIAAPKTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSI 166
           +GGGL L  G   ++    +++ +PE+T+G+ P   G+  L R+ G    + + L +  +
Sbjct: 154 MGGGLGLMAGASHKVVTETSRIAMPEVTIGLYPDVGGSYFLNRMPG-KMGLFLGLTAYHM 212

Query: 167 TSEEGWKLGLIDAVVTSEEL 186
            + +   +GL D  +  ++ 
Sbjct: 213 NAADACYVGLADHYLNRDDK 232

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens} Length = 363

 Score = 90.8 bits (226), Expect = 8e-20
 Identities = 51/191 (26%), Positives = 86/191 (45%), Gaps = 8/191 (4%)

Query: 2   AAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
           AA  V +        +ITL  P   NAL + ++  +  + ++     +   I++ G GG+
Sbjct: 4   AAEEVLLGKKG-CTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGK 62

Query: 61  -FSGGFDINVFQKVHGAGDVSLMPDVSVELVVN-LIEDCKKPIVAAVEGLALGGGLELAM 118
            F  G DI V  +   A           E ++N  +  C+KP VA + G+ +GGG+ L++
Sbjct: 63  AFCAGGDIRVISEAEKAKQKIAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSV 122

Query: 119 GCHARIAAPKTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLG 175
               R+A  K    +PE  +G+ P   G   LPRL G      + L    +   + ++ G
Sbjct: 123 HGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQG-KLGYFLALTGFRLKGRDVYRAG 181

Query: 176 LIDAVVTSEEL 186
           +    V SE+L
Sbjct: 182 IATHFVDSEKL 192

>3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304} Length = 110

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 9/100 (9%)

Query: 610 GKPISVTEKE----IVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIV 665
           G+P   + K           F  +NE+ +++E G V    D+D A  LG++ P    G  
Sbjct: 5   GRPQIDSSKATDKINPMDFTFVEINEAVKLVEMG-VATPQDIDTAIKLGLNRPF---GPF 60

Query: 666 FWADAVGANYVYTSLKKWSQLYGN-FFKPSRFLEERATKG 704
             A   GA  +   L++ ++ +G   F+P++ L+E   + 
Sbjct: 61  ELAKQFGAEQIAKRLEELAKQFGKKIFEPAKTLKEGKLEE 100

>3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304} Length = 110

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 25/110 (22%), Positives = 39/110 (35%), Gaps = 6/110 (5%)

Query: 473 GKIIKKVPVVVGNCTGFAVNRA--FFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLPIGP 528
           G    + P +  +     +N     F     A  LV +GV     ID+AI+     P GP
Sbjct: 1   GHSKGR-PQIDSSKATDKINPMDFTFVEINEAVKLVEMGVATPQDIDTAIKLGLNRPFGP 59

Query: 529 FQLLDLAGYGVAAATSKEFDKAFPDRSFQ-SPLVDLLLKSGRNGKANGKG 577
           F+L    G    A   +E  K F  + F+ +  +              +G
Sbjct: 60  FELAKQFGAEQIAKRLEELAKQFGKKIFEPAKTLKEGKLEELLKAGKAEG 109

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.8 bits (136), Expect = 2e-08
 Identities = 83/604 (13%), Positives = 184/604 (30%), Gaps = 152/604 (25%)

Query: 36  LKDKFEEATSRDDVKAIVLTGN---GGRFSGGFDI------NVFQKVHGAGDVSLMPDVS 86
           ++D  +   S++++  I+++ +   G      F         + QK     +V L  +  
Sbjct: 38  VQDMPKSILSKEEIDHIIMSKDAVSGTLRL--FWTLLSKQEEMVQKF--VEEV-LRINYK 92

Query: 87  VELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARI-----AAPKTQLGLPELTLGVI 141
             L+  +  + ++P               + +    R+        K  +   +  L + 
Sbjct: 93  F-LMSPIKTEQRQP----------SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR 141

Query: 142 PGTQRL---PRLV-----GLSK---AIEMMLLSKSITSEEG----W-KLGLIDAVVTSEE 185
                L     ++     G  K   A+++  LS  +  +      W  L   +   + E 
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDV-CLSYKVQCKMDFKIFWLNLKNCN---SPET 197

Query: 186 LLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACL 245
           +L+   L  L          RS H ++    +   +  L+  RL   K       ++ CL
Sbjct: 198 VLE--MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR--RLLKSK------PYENCL 247

Query: 246 DVIEEGIVHGGYSGVLKEAKVFKELVMLD-TSRGLVHVFFAQRATSKVPNVTDIGLKPRG 304
            V+            ++ AK +      + + + L+        T++   VTD  L    
Sbjct: 248 LVLLN----------VQNAKAWN---AFNLSCKILL--------TTRFKQVTDF-LSAAT 285

Query: 305 VRKVAVI--GGGLMGSGIAT--AHILNNIYVVL-KEVNSEYLLKGIKTIEANVRGLVTR- 358
              +++      L    + +     L+     L +EV +    + +  I  ++R  +   
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR-LSIIAESIRDGLATW 344

Query: 359 ---GKLTQDKANNALKMLKGVLDYSEFKD--VDMVIEAVIESVPLKQKIFSELEKACPPH 413
                +  DK    ++    VL+ +E++     + +     S  +   +           
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV--FPPSAHIPTILL---------- 392

Query: 414 CILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMP--LLEIVRTERTSAQV---ILD 468
            ++  +    D+ +V  K      ++          +P   LE+         +   I+D
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKY-SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451

Query: 469 LMTVGKIIKKVPVVVGNCTGFAVNRA---FFPY----------SQSARLLVSLGVDVFR- 514
                 I K                    F+ +           +   L   + +D FR 
Sbjct: 452 HY---NIPKTFD-----SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD-FRF 502

Query: 515 IDSAIRSFGLPIGPFQ-----LLDLAGYGVAAATSKEF---DKAFPDRSFQSPLVDLLLK 566
           ++  IR               L  L  Y       K +   +    +R   + ++D L K
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKFY-------KPYICDNDPKYERLVNA-ILDFLPK 554

Query: 567 SGRN 570
              N
Sbjct: 555 IEEN 558

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 4e-06
 Identities = 54/384 (14%), Positives = 99/384 (25%), Gaps = 134/384 (34%)

Query: 367 NNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQ--KIFSELEKACPPHCILATNTSTID 424
            +   M K +L   E   +      ++    +    ++F  L                  
Sbjct: 36  KDVQDMPKSILSKEEIDHI------IMSKDAVSGTLRLFWTLL----------------- 72

Query: 425 LNIVGEKTSSQDRIIGAHFFSPAHVMP---LLEIVRTERTSAQVILDLMTVGKIIKKVPV 481
                   S Q+ ++   F      +    L+  ++TE+    ++  +      I++   
Sbjct: 73  --------SKQEEMV-QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY-----IEQRDR 118

Query: 482 VVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLD-LAGYG-- 538
           +      +  N+ F  Y+      VS      ++  A+    L      L+D + G G  
Sbjct: 119 L------YNDNQVFAKYN------VSRLQPYLKLRQALLE--LRPAKNVLIDGVLGSGKT 164

Query: 539 -VAAAT--SKEFDKAFPDRSF-------QSP------LVDLLLKSGRNGKANGKGLYTYE 582
            VA     S +       + F        SP      L  LL +   N  +        +
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224

Query: 583 KGSKPKPDPSVLPIIEECRRLSNIMPGGK-PIS------VTEKEIVEMILFPVVNESCRV 635
                      L I      L  ++              V   +      F   N SC++
Sbjct: 225 -----------LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA--F---NLSCKI 268

Query: 636 LEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGAN-YVYTSLKKWS---------Q 685
           L   +  R        V                D + A    + SL   S          
Sbjct: 269 L---LTTR-----FKQV---------------TDFLSAATTTHISLDHHSMTLTPDEVKS 305

Query: 686 LYGNFF--KPSRFLEERATKGIPL 707
           L   +   +P   L        P 
Sbjct: 306 LLLKYLDCRPQD-LPREVLTTNPR 328

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 2e-04
 Identities = 35/292 (11%), Positives = 72/292 (24%), Gaps = 106/292 (36%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDV--KAIVLTGNG 58
            +  ++ +      +  +    P  N L +     L           +V           
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLV-----L----------LNVQNAKAW----- 259

Query: 59  GRFSGGFDINVFQKVHGAGDVSLM--PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLEL 116
                 F+++   K+       L+      V   ++        +      L       L
Sbjct: 260 ----NAFNLSC--KI-------LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 117 AMGCHARIAAPKTQLGLPELTLGVIPGTQRLPRLVG--------------------LSKA 156
                 +    + Q  LP   L   P   R   ++                     L+  
Sbjct: 307 L----LKYLDCRPQ-DLPREVLTTNP---RRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358

Query: 157 IEMML--LSKSITSEEGWKLGLI--DAVVTSEELLKVSRLWA-------LDIAA------ 199
           IE  L  L  +   +   +L +    A + +  L   S +W        + +        
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL---SLIWFDVIKSDVMVVVNKLHKYS 415

Query: 200 ----RRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQ-HQACLD 246
               + K    S+       S+           L+ K    N    H++ +D
Sbjct: 416 LVEKQPKESTISIP------SIY----------LELKVKLENEYALHRSIVD 451

>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A Length = 230

 Score = 40.7 bits (95), Expect = 8e-04
 Identities = 40/202 (19%), Positives = 61/202 (30%), Gaps = 59/202 (29%)

Query: 15  VAIITL---INPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN--GGRFSGGFDINV 69
           V +  +   I                     A  +D+ +AI++  +  GGR     +I  
Sbjct: 10  VYVAQIKGQITSYTYDQ-------FDRYITIA-EQDNAEAIIIELDTPGGRADAMMNI-- 59

Query: 70  FQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE---GLALGGGLELAMGCHARIAA 126
                                V  I+  K P++  V      A   G  +A+G H    A
Sbjct: 60  ---------------------VQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMA 98

Query: 127 PKTQLGLPELTLGVIPGTQRLPRLVG-------------------LSKAIEMMLLSKSIT 167
           P T +G     LG       +                         + A E +    S+T
Sbjct: 99  PGTSIGACRPILGYSQNGSIIEAPPAITNYFIAYIKSLAQESGRNATIAEEFITKDLSLT 158

Query: 168 SEEGWKLGLIDAVVTS-EELLK 188
            EE  K G+I+ V     ELLK
Sbjct: 159 PEEALKYGVIEVVARDINELLK 180

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	721
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	100.0
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	100.0
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	100.0
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	100.0
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	100.0
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	100.0
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	100.0
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	100.0
3hrx_A	254	Probable enoyl-COA hydratase; the spiral fold, the	100.0
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	100.0
4fzw_C	274	1,2-epoxyphenylacetyl-COA isomerase; structural ge	100.0
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	100.0
4fzw_A	258	2,3-dehydroadipyl-COA hydratase; structural genomi	100.0
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	100.0
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	100.0
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	100.0
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	100.0
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	100.0
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	100.0
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	100.0
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	100.0
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	100.0
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	100.0
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	100.0
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 112 structural	100.0
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	100.0
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	100.0
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	100.0
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	100.0
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	100.0
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	100.0
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	100.0
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	100.0
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	100.0
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	100.0
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	100.0
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	100.0
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	100.0
4hdt_A	353	3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti	100.0
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	100.0
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	100.0
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	100.0
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	100.0
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	100.0
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	100.0
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	100.0
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	100.0
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	100.0
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	100.0
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	100.0
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	100.0
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	100.0
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	100.0
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	100.0
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	100.0
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	100.0
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	100.0
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	100.0
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	100.0
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	100.0
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	100.0
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	100.0
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	100.0
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	100.0
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	100.0
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	100.0
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	100.0
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	100.0
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	100.0
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	100.0
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	100.0
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	100.0
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	100.0
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	100.0
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	100.0
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	100.0
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	100.0
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	100.0
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	100.0
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	100.0
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	100.0
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	100.0
3t3w_A	279	Enoyl-COA hydratase; ssgcid, structural genomics,	100.0
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	100.0
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	100.0
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	99.89
3ctv_A	110	HBD-10, 3-hydroxyacyl-COA dehydrogenase; structura	99.88
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	99.79
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	99.79
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	99.78
3rst_A	240	Signal peptide peptidase SPPA; alpha/beta protein	99.75
3ctv_A	110	HBD-10, 3-hydroxyacyl-COA dehydrogenase; structura	99.75
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	99.74
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	99.71
3viv_A	230	441AA long hypothetical NFED protein; protein-pept	99.71
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	99.7
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	99.69
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	99.69
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	99.67
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	99.66
3qha_A	296	Putative oxidoreductase; seattle structural genomi	99.65
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	99.64
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	99.64
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	99.64
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	99.64
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	99.64
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	99.63
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	99.61
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	99.6
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	99.6
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	99.59
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	99.56
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	99.55
4ezb_A	317	Uncharacterized conserved protein; structural geno	99.54
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	99.54
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	99.53
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	99.53
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	99.52
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	99.52
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	99.52
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	99.5
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	99.49
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	99.49
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	99.49
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	99.48
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	99.48
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	99.47
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	99.47
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	99.47
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	99.47
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	99.46
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	99.46
2f9y_B	304	Acetyl-coenzyme A carboxylase carboxyl transferas	99.46
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	99.46
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	99.46
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	99.46
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	99.45
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	99.45
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	99.44
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	99.44
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	99.44
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	99.41
1y7o_A	218	ATP-dependent CLP protease proteolytic subunit; hy	99.41
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	99.4
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	99.39
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	99.39
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	99.37
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	99.37
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	99.36
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	99.36
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	99.35
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	99.34
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	99.33
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	99.31
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	99.29
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	99.29
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	99.27
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	99.27
2f9i_A	327	Acetyl-coenzyme A carboxylase carboxyl transferase	99.26
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	99.26
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	99.25
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	99.24
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	99.23
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	99.22
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	99.22
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	99.21
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	99.21
2f9y_A	339	Acetyl-COA carboxylase, carboxyltransferase alpha;	99.21
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	99.2
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	99.18
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	99.18
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	99.16
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	99.14
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	99.12
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	99.11
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	99.09
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	99.09
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	99.09
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	99.06
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	99.05
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	98.53
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	98.95
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	98.94
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	98.9
3tl2_A	315	Malate dehydrogenase; center for structural genomi	98.86
2cby_A	208	ATP-dependent CLP protease proteolytic subunit 1;	98.83
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	98.82
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	98.81
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	98.81
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	98.8
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	98.79
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	98.79
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	98.75
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	98.75
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	98.74
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	98.73
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	98.71
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	98.71
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	98.68
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	98.68
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	98.68
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	98.67
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	98.66
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	98.66
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	98.65
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	98.6
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	98.58
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	98.56
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	98.53
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	98.53
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	98.52
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	98.52
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	98.51
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	98.49
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	98.46
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	98.44
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	98.44
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	98.38
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	98.37
3qwd_A	203	ATP-dependent CLP protease proteolytic subunit; ca	98.35
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	98.35
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	98.33
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	98.33
2f6i_A	215	ATP-dependent CLP protease, putative; structural g	98.33
1yg6_A	193	ATP-dependent CLP protease proteolytic subunit; en	98.31
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	98.29
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	98.28
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	98.28
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	98.28
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	98.27
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	98.27
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	98.26
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	98.26
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	98.25
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	98.24
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	98.24
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	98.21
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	98.21
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	98.19
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	98.18
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	98.17
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	98.16
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	98.16
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	98.16
3p2l_A	201	ATP-dependent CLP protease proteolytic subunit; st	98.16
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	98.16
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	98.15
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	98.12
1tg6_A	277	Putative ATP-dependent CLP protease proteolytic S;	98.11
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	98.08
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	98.08
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	98.05
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	98.04
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	98.03
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	98.03
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	98.0
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	97.97
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	97.85
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	97.83
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	97.83
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.83
1up7_A	417	6-phospho-beta-glucosidase; hydrolase, family4 hyd	97.8
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	97.79
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	97.78
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	97.77
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	97.77
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	97.77
4gm2_A	205	ATP-dependent CLP protease proteolytic subunit; st	97.75
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.72
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	97.72
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	97.72
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.72
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	97.67
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.65
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	97.63
2duw_A	145	Putative COA-binding protein; ligand binding prote	97.62
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.59
3u95_A	477	Glycoside hydrolase, family 4; hydrolysis, cytosol	97.59
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	97.57
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	97.55
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	97.54
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.48
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	97.42
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	97.4
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	97.39
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	97.38
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	97.35
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	97.35
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	97.34
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	97.32
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	97.31
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	97.28
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	97.27
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	97.26
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	97.24
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	97.24
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	97.2
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	97.12
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	97.12
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	97.09
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	97.08
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	97.07
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	97.07
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	97.06
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	97.02
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.01
2f9i_B	285	Acetyl-coenzyme A carboxylase carboxyl transferase	97.0
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	97.0
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.0
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	96.97
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	96.97
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	96.96
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	96.95
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	96.94
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	96.94
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	96.92
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	96.9
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	96.89
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	96.88
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	96.87
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	96.86
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	96.85
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	96.84
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	96.84
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	96.81
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.8
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	96.8
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	96.8
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	96.75
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	96.71
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	96.71
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	96.7
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	96.69
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	96.68
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	96.67
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	96.65
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	96.64
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	96.64
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	96.62
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	96.57
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.56
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	96.56
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	96.55
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	96.52
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	96.52
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.42
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	96.41
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	96.4
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.39
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	96.39
1ydw_A	362	AX110P-like protein; structural genomics, protein	96.33
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	96.33
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	96.31
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	96.21
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	96.2
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	96.2
4g65_A	461	TRK system potassium uptake protein TRKA; structur	96.15
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	96.1
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	96.07
4had_A	350	Probable oxidoreductase protein; structural genomi	96.06
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	96.03
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	96.02
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	96.0
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	95.97
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	95.96
2b0j_A	358	5,10-methenyltetrahydromethanopterin hydrogenase;	95.96
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	95.92
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	95.91
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	95.88
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	95.87
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	95.86
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	95.86
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	95.84
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	95.8
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	95.78
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	95.75
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	95.74
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	95.7
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	95.69
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	95.65
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	95.6
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	95.59
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	95.57
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	95.56
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	95.5
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	95.47
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	95.47
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	95.43
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	95.43
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	95.41
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	95.36
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	95.3
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	95.27
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	95.25
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	95.19
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	95.17
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	95.11
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	95.1
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	95.09
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	95.07
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	95.03
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	94.98
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	94.96
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	94.9
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	94.88
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	94.87
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	94.8
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	94.73
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	94.72
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	94.72
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	94.65
3l07_A	285	Bifunctional protein fold; structural genomics, ID	94.64
3k8x_A	758	Acetyl-COA carboxylase; transferase, carboxyltrans	94.62
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	94.6
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	94.53
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	94.51
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	94.47
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	94.45
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	94.44
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	94.26
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	94.25
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	94.19
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	94.16
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	94.1
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	94.04
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	94.03
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	93.9
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	93.85
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	93.77
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	93.77
4hb9_A	412	Similarities with probable monooxygenase; flavin,	93.73
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	93.72
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	93.7
3hsk_A	381	Aspartate-semialdehyde dehydrogenase; candida albi	93.67
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	93.65
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	93.61
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	93.59
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	93.58
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	93.55
2x24_A	793	Acetyl-COA carboxylase; fatty acid biosynthesis, l	93.53
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	93.52
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	93.47
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	93.42
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	93.26
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	93.23
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	93.22
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	93.22
4h3v_A	390	Oxidoreductase domain protein; structural genomics	93.2
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	93.14
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	93.1
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	93.09
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	93.07
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	93.01
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	93.0
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	92.94
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	92.94
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	92.93
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	92.88
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	92.85
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	92.67
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	92.55
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	92.44
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	92.42
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	92.31
1lnq_A	336	MTHK channels, potassium channel related protein;	92.27
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	92.27
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	92.22
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	92.21
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	92.18
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	92.17
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	92.16
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	92.12
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	92.11
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	91.99
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	91.98
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	91.95
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	91.9
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	91.88
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	91.85
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	91.82
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	91.82
3ing_A	325	Homoserine dehydrogenase; NP_394635.1, structural	91.65
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	91.57
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	91.53
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	91.49
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	91.25
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	91.19
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	91.15
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	91.15
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	91.11
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	91.07
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	91.07
4g65_A	461	TRK system potassium uptake protein TRKA; structur	91.04
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	90.99
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	90.96
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	90.94
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	90.91
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	90.83
1t4b_A	367	Aspartate-semialdehyde dehydrogenase; asadh, HOSR,	90.74
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	90.73

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=100.00  E-value=1.9e-133  Score=1161.08  Aligned_cols=685  Identities=34%  Similarity=0.559  Sum_probs=610.4

Q ss_pred             EEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHH
Q 004972            8 MEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSV   87 (721)
Q Consensus         8 ~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~   87 (721)
                      ++. +++|++||||||+.|+||.+|+++|.+++++++.|+++|+|||||.|+.||+|+||+++......       ....
T Consensus        25 ~~~-~~~Va~itlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aGaDl~~~~~~~~~-------~~~~   96 (742)
T 3zwc_A           25 LRL-PHSLAMIRLCNPPVNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFSAFTPG-------LALG   96 (742)
T ss_dssp             EEC-STTEEEEEECCTTTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCSSSCCSSCSC-------SHHH
T ss_pred             EEe-eCCEEEEEeCCCcccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCccccCcChHhhhccChh-------HHHH
Confidence            445 79999999999999999999999999999999999999999999999999999999998653221       1234


Q ss_pred             HHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHHHHHcCC
Q 004972           88 ELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSK  164 (721)
Q Consensus        88 ~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~l~ltg~  164 (721)
                      .++ +.|.++||||||+|||+|+||||+|+|+||||||+++++|++||+++|++|+   +++|+|++|..+|++|++||+
T Consensus        97 ~~~-~~i~~~~kPvIAai~G~a~GGG~elalacD~ria~~~a~fg~pev~lGl~Pg~ggt~rL~rlvG~~~A~~l~ltG~  175 (742)
T 3zwc_A           97 SLV-DEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILPGARGTQLLPRVVGVPVALDLITSGK  175 (742)
T ss_dssp             HHH-HHHHHCSSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCTTTHHHHHHHHHCHHHHHHHHHHCC
T ss_pred             HHH-HHHHhCCCCEEEEECccchHHHHHHHHhcCEEEEcCCCEEECcccCcccCCCccHHHHHHHhhhHHHHHHHHHcCC
Confidence            566 6799999999999999999999999999999999999999999999999997   999999999999999999999


Q ss_pred             CcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 004972          165 SITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQAC  244 (721)
Q Consensus       165 ~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~  244 (721)
                      +++|+||+++||||+|+|++. .++|.++|++++++++...+...+.  ..........+..+....+++.++|+|+..+
T Consensus       176 ~i~a~eA~~~GLv~~vv~~d~-~~~A~~~A~~ia~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~k~~~~~~A~~~~  252 (742)
T 3zwc_A          176 YLSADEALRLGILDAVVKSDP-VEEAIKFAQKIIDKPIEPRRIFNKP--VPSLPNMDSVFAEAIAKVRKQYPGVLAPETC  252 (742)
T ss_dssp             CEEHHHHHHHTSCSEEESSCH-HHHHHHHHHHHTTSCSGGGCGGGSC--CCCCTTHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             chhHHHHHHcCCccEecCchh-hHHHHHHHHHHhcCCchhhhhhccc--ccccchhhhhHHHHHHHHhhhccchhHHHHH
Confidence            999999999999999998765 5789999999999887554433222  2222222334444555666788899999999


Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCCCCC---CCCCCCCCceeEEEEcCCCCcHHHH
Q 004972          245 LDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVT---DIGLKPRGVRKVAVIGGGLMGSGIA  321 (721)
Q Consensus       245 ~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~~~~---~~~~~~~~~~kI~VIG~G~mG~~iA  321 (721)
                      +++++.+...+++++++.|.+.|.+++.|+++++++++|+++|+.+|.+...   ..+..+++++||+|||+|.||++||
T Consensus       253 ~~~v~~~~~~~~~~gl~~E~~~F~~l~~s~~~k~~~~aFf~~r~~~k~~~~~~~~~~~~~~~~i~~v~ViGaG~MG~gIA  332 (742)
T 3zwc_A          253 VRSIQASVKHPYEVGIKEEEKLFMYLRASGQAKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIA  332 (742)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHTTSCBCTTCCBTTTCCCCCCCEEEEECCSHHHHHHH
T ss_pred             HHHHHHHhhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccccccccccccccCcccccEEEEEcccHHHHHHH
Confidence            9999999999999999999999999999999999999999999998865421   2244567899999999999999999


Q ss_pred             HHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCCCEEEEcccCChHHHHH
Q 004972          322 TAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQK  401 (721)
Q Consensus       322 ~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVIeavpe~~~~k~~  401 (721)
                      ..++++|++|+++|++++.++++.+.+...++..+.++..+..  .....+++.+++++.+++||+|||||||++++|++
T Consensus       333 ~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~aDlVIEAV~E~l~iK~~  410 (742)
T 3zwc_A          333 ISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQ--ASAKPKLRFSSSTKELSTVDLVVEAVFEDMNLKKK  410 (742)
T ss_dssp             HHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTC--CCCCCCEEEESCGGGGGSCSEEEECCCSCHHHHHH
T ss_pred             HHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccch--hhhhhhhcccCcHHHHhhCCEEEEeccccHHHHHH
Confidence            9999999999999999999999999999888887766544322  23446788899999999999999999999999999


Q ss_pred             HHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCCCHHHHHHHHHHHHHcCCeeE
Q 004972          402 IFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPV  481 (721)
Q Consensus       402 v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v  481 (721)
                      +|+++++++++++||+||||+++++++++.+.+|+||+|+|||||++.|++||||+++.|++++++.+..|.+.+||+||
T Consensus       411 vf~~le~~~~~~aIlASNTSsl~i~~ia~~~~~p~r~ig~HFfnP~~~m~LVEvi~g~~Ts~e~~~~~~~~~~~lgK~pV  490 (742)
T 3zwc_A          411 VFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGV  490 (742)
T ss_dssp             HHHHHHHHSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEECCSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHhhcCCCCceEEecCCcCChHHHHhhcCCccccccccccCCCCCCceEEEecCCCCCHHHHHHHHHHHHHhCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHHhhchHHHHHHHHHHHHhCCCC-------
Q 004972          482 VVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR-------  554 (721)
Q Consensus       482 ~v~d~~gfi~nRl~~~~~~Ea~~l~~~Gv~~~~ID~a~~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~-------  554 (721)
                      +++|.||||+||++.++++|+++++++|+++++||.++.++|+|||||+++|++|||+.+++.+.+....++.       
T Consensus       491 ~vkd~pGFi~NRi~~~~~~ea~~l~~eG~~~~~id~a~~~~G~pmGPf~l~D~vGlDv~~~v~~~~~~~~~~~~~~~~~~  570 (742)
T 3zwc_A          491 VVGNCYGFVGNRMLAPYYNQGFFLLEEGSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVR  570 (742)
T ss_dssp             ECCCSTTTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSSCHHHHHHHHCHHHHHHHHHHTTSSSTTSCTTCCTT
T ss_pred             ccCCCCCccHHHHhhHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCChHHHHHHhCHHHHHHHHHHHHhhCcccCccchhh
Confidence            9999999999999999999999999999999999999988999999999999999999999999876543321       


Q ss_pred             ----CCCcHHHHHHHHcCCCCcccCccccccCCCC--CCCCCCCchhHHHHHhhhccCCCCCCCcccChHHHHHHHHHHH
Q 004972          555 ----SFQSPLVDLLLKSGRNGKANGKGLYTYEKGS--KPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPV  628 (721)
Q Consensus       555 ----~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~  628 (721)
                          ..+++++++|+++|++|+|||+|||+|++++  ...+|+++..++...+....+.+    ..++.++|.+|+++++
T Consensus       571 ~~~~~~~~~l~~~mv~~G~lG~KtG~GFY~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ei~~R~l~~~  646 (742)
T 3zwc_A          571 KRGNSRYSPLGDMLCEAGRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHIEQ----RTISKEEILERCLYSL  646 (742)
T ss_dssp             EETTEECCCHHHHHHTTTCCBGGGTBSSSEESSTTCSCEECCHHHHHHHHHHHHHHTCCC----CCCCHHHHHHHHHHHH
T ss_pred             hcccccccHHHHHHHHCCCccccCCCeeEECCCCCCccCCCChHHHHHHHHHhhhcCCCc----CCCCHHHHHHHHHHHH
Confidence                1156799999999999999999999997643  34677777777766555444333    3578899999999999


Q ss_pred             HHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCC--CCCCCHHHHHHHHcCCC
Q 004972          629 VNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN--FFKPSRFLEERATKGIP  706 (721)
Q Consensus       629 ~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~--~~~p~~~l~~~~~~g~~  706 (721)
                      +|||++||+|||+.+++|||.+|++|+|||+|+||||+|+|.+|++.+++.|+++.+++|+  +|+|+++|++|+++|++
T Consensus       647 ~nEa~~~l~egI~~~~~diD~a~~~G~Gfp~~~GGp~~~~D~~G~~~~v~~l~~l~~~~g~~~~~~P~~~L~~ma~~G~~  726 (742)
T 3zwc_A          647 INEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQGSP  726 (742)
T ss_dssp             HHHHHHHHHTTSSSCHHHHHHHHHHHSCCCGGGCCHHHHHHHHCHHHHHHHHHHHHHHCTTCGGGSCCHHHHHHHHTTCC
T ss_pred             HHHHHHHhhcCcCCCHHHHHHHHHhCcCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999999999999999999999996  89999999999999974


Q ss_pred             -CcCC
Q 004972          707 -LSAP  710 (721)
Q Consensus       707 -f~~~  710 (721)
                       ||+|
T Consensus       727 ~f~~~  731 (742)
T 3zwc_A          727 PLKEW  731 (742)
T ss_dssp             CGGGH
T ss_pred             ccccc
Confidence             6777

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=100.00  E-value=2.1e-125  Score=1102.25  Aligned_cols=703  Identities=58%  Similarity=0.954  Sum_probs=593.1

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCC-CCcCCCCchhhhhccCC--C
Q 004972            1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG-RFSGGFDINVFQKVHGA--G   77 (721)
Q Consensus         1 m~~~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~-~F~aG~Dl~~~~~~~~~--~   77 (721)
                      |+++.++++..+++|++||||||+.|+||.+|+++|.+++++++.|+++|+||||| |+ .||+|+|++++......  .
T Consensus         4 ~~~~~i~~~~~~~~va~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~~~~~~   82 (725)
T 2wtb_A            4 RTKGKTVMEVGGDGVAVITLINPPVNSLSFDVLYNLKSNYEEALSRNDVKAIVITG-AKGRFSGGFDISGFGEMQKGNVK   82 (725)
T ss_dssp             ---CEEEEEECTTSEEEEEEECTTTTCCCHHHHHHHHHHHHHHTTCTTCCEEEEEE-SSSCCBCSSCC------------
T ss_pred             CcCCeEEEEEeeCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC-CCCcccCCcCHHHHhcccchhhh
Confidence            55677899833789999999999889999999999999999999999999999999 76 99999999998542211  0


Q ss_pred             cccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHH
Q 004972           78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLS  154 (721)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~  154 (721)
                      ....+....+.++ +.|.++||||||+|||+|+|||++|+|+||||||+++++|++||+++|++|+   +++|+|++|..
T Consensus        83 ~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~Ggt~~L~rlvG~~  161 (725)
T 2wtb_A           83 EPKAGYISIDIIT-DLLEAARKPSVAAIDGLALGGGLELAMACHARISAPAAQLGLPELQLGVIPGFGGTQRLPRLVGLT  161 (725)
T ss_dssp             CCSSSHHHHHCCC-CCCCTSSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCCCSSHHHHHHHHHCHH
T ss_pred             hHHHHHHHHHHHH-HHHHhCcCcEEEEECCccCcccHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhcCHH
Confidence            0112222333444 5588999999999999999999999999999999999999999999999997   89999999999


Q ss_pred             HHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcC-ch--hhhhhhccCCCCCcHHHHHHHHHHHHHH
Q 004972          155 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARR-KP--WIRSLHRTDKLGSLSEAREVLKLARLQA  231 (721)
Q Consensus       155 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (721)
                      +|++|++||++++|+||+++||||+|||++++++++.++++++++.+ |+  ..+  . ..+.+........+..++...
T Consensus       162 ~A~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~--~-~~~~~~~~~~~~~~~~a~~~~  238 (725)
T 2wtb_A          162 KALEMILTSKPVKAEEGHSLGLIDAVVPPAELVTTARRWALDIVGRRKPWVSSVS--K-TDKLPPLGEAREILTFAKAQT  238 (725)
T ss_dssp             HHHHHHHHCCCEEHHHHHHHTSCSEECCTTTHHHHHHHHHHHHHTTSSCCCCGGG--C-CTTSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCHHHHHHCCccceEcChhHHHHHHHHHHHHHHhcCCChhhhhh--h-ccccCccchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998873 22  111  0 001112222333555566655


Q ss_pred             H-HhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCceeEEE
Q 004972          232 K-KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAV  310 (721)
Q Consensus       232 ~-~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~~~~~~~~~~~~~~kI~V  310 (721)
                      + ++++ |||+..+|++++.+...+++++++.|.+.|..++.|+|+++++++|++||+++|.++....+..+++|+||+|
T Consensus       239 ~~~~~g-~pA~~~~k~~~~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~~~~~~~~~~~~~~~~~kV~V  317 (725)
T 2wtb_A          239 LKRAPN-MKHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKGLIHVFFSQRGTAKVPGVTDRGLVPRKIKKVAI  317 (725)
T ss_dssp             HHHCTT-CCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCTTTSSSCCCCCCCCCEEE
T ss_pred             HHhccC-CcHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcchhHHHHHHHhhhhhhhcccCCCCccccccccCcEEEE
Confidence            4 4555 9999999999999999999999999999999999999999999999999999998863211334567899999


Q ss_pred             EcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCCCEEEE
Q 004972          311 IGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIE  390 (721)
Q Consensus       311 IG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVIe  390 (721)
                      ||+|.||++||..++++|++|++||++++.++++.+.+++.+++++++|.+++.+.+...++++.+++++.+++||+||+
T Consensus       318 IGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~~~~~~aDlVIe  397 (725)
T 2wtb_A          318 IGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYESFRDVDMVIE  397 (725)
T ss_dssp             ECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSSGGGTTCSEEEE
T ss_pred             EcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCHHHHCCCCEEEE
Confidence            99999999999999999999999999999999998889999999999999888777888899999999988999999999


Q ss_pred             cccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCCCHHHHHHHH
Q 004972          391 AVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLM  470 (721)
Q Consensus       391 avpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t~~e~~~~~~  470 (721)
                      ||||+.++|+++++++.+++++++||+||||+++++++++.+.++++++|+|||+|++.++++|+++++.|++++++.+.
T Consensus       398 aVpe~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la~~~~~p~~~iG~hf~~P~~~~~lvevv~g~~t~~e~~~~~~  477 (725)
T 2wtb_A          398 AVIENISLKQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRTNHTSAQVIVDLL  477 (725)
T ss_dssp             CCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTTTCSCTTTEEEEEECSSTTTCCEEEEEECSSCCHHHHHHHH
T ss_pred             cCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHHhcCCCCEEEecCCCCcccCceEEEEECCCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999998889999999999999999999999999999999999999


Q ss_pred             HHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHHhhchHHHHHHHHHHHHh
Q 004972          471 TVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKA  550 (721)
Q Consensus       471 ~l~~~lG~~~v~v~d~~gfi~nRl~~~~~~Ea~~l~~~Gv~~~~ID~a~~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~  550 (721)
                      ++++.+|+.|++++|.|||++||++.++++|++.++++|+++++||+++.++|+|||||+++|++|||+.+++.+.+++.
T Consensus       478 ~l~~~lGk~~v~v~d~~Gfi~Nril~~~~~Ea~~l~~~G~~~e~id~~~~~~g~p~Gp~~l~D~vGld~~~~i~~~~~~~  557 (725)
T 2wtb_A          478 DVGKKIKKTPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRAISKFGMPMGPFRLCDLVGFGVAIATATQFIEN  557 (725)
T ss_dssp             HHHHHTTCEEEEEESSTTTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSSCHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCEEEEECCCccHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCCCCCHHHHHHHhchHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999998899999999999999999999999999998


Q ss_pred             CCCC-CCCcHHHHHHHHcCCCCcccCccccccCCCCCCCCCCCchhHHHHHhhhccCCCCCCCcccChHHHHHHHHHHHH
Q 004972          551 FPDR-SFQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVV  629 (721)
Q Consensus       551 ~~~~-~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~  629 (721)
                      ++++ +.| +++++|+++|++|+|||+|||+|++.++..+|+++..++...+....+.+..+...+++++|.+|++++++
T Consensus       558 ~~~~~~~~-~~l~~~v~~g~lG~k~g~GfY~y~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~l~~~~  636 (725)
T 2wtb_A          558 FSERTYKS-MIIPLMQEDKRAGEATRKGFYLYDDKRKAKPDPELKKYIEKARSISGVKLDPKLANLSEKDIIEMTFFPVV  636 (725)
T ss_dssp             SGGGCCCC-THHHHHHTTC---------------------CCCCCTTSHHHHHHTCCSCCCTTTTCCHHHHHHHHHHHHH
T ss_pred             cCCccCCh-HHHHHHHHCCCceecCCceeEeCCCCccCCCCHHHHHHHHhhhhhccccchhhcccCCHHHHHHHHHHHHH
Confidence            8876 446 99999999999999999999999632223478888777664432111101111123678999999999999


Q ss_pred             HHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHcCCCCcC
Q 004972          630 NESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKGIPLSA  709 (721)
Q Consensus       630 ~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~f~~  709 (721)
                      ||+++||+|||+.+++|||.+|++|+|||+|+||||+|+|.+|++.+++.++++++.+|++|+|+++|++|+++|++||.
T Consensus       637 nea~~~l~egi~~~~~diD~~~~~G~g~p~~~GGp~~~~d~~G~~~~~~~~~~~~~~~g~~~~p~~~l~~~~~~g~~f~~  716 (725)
T 2wtb_A          637 NEACRVFAEGIAVKAADLDIAGIMGMGFPPYRGGIMFWADSIGSKYIYSRLDEWSKAYGEFFKPCAFLAERGSKGVLLSA  716 (725)
T ss_dssp             HHHHHHHHTTSSSCHHHHHHHHHHHHCCCGGGCCHHHHHHHHCHHHHHHHHHHHHHHHCGGGCCCHHHHHHHHHTCCSSS
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHcCCCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             C
Q 004972          710 P  710 (721)
Q Consensus       710 ~  710 (721)
                      .
T Consensus       717 ~  717 (725)
T 2wtb_A          717 P  717 (725)
T ss_dssp             C
T ss_pred             h
Confidence            3

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=100.00  E-value=1.1e-124  Score=1095.85  Aligned_cols=692  Identities=30%  Similarity=0.519  Sum_probs=613.6

Q ss_pred             CCcEEEEEecCcEEEEEeCCC--CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCC-CCcCCCCchhhhhccCCC--
Q 004972            3 APRVTMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG-RFSGGFDINVFQKVHGAG--   77 (721)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p--~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~-~F~aG~Dl~~~~~~~~~~--   77 (721)
                      .+.++++..+++|++||||||  +.|+||.+|+++|.+++++++.|+++|+||||| |+ .||+|+|++++.......  
T Consensus         5 ~~~i~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~~~~~~   83 (715)
T 1wdk_A            5 GKAITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSS-GKDVFIVGADITEFVENFKLPDA   83 (715)
T ss_dssp             CSSEEEEECGGGEEEEEECCTTSSSCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEE-SSSSSBBCCCHHHHHHHTTSCHH
T ss_pred             CCeEEEEEeeCCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC-CCCeEeCCcCHHHHhhcccCCHH
Confidence            456888833789999999999  579999999999999999999999999999999 76 999999999986532111  


Q ss_pred             cccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHH
Q 004972           78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLS  154 (721)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~  154 (721)
                      ....+....++++ ++|.++||||||+|||+|+|||++|+|+||||||+++++|++||+++|++|+   +++|+|++|..
T Consensus        84 ~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~ggt~~L~r~vG~~  162 (715)
T 1wdk_A           84 ELIAGNLEANKIF-SDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVD  162 (715)
T ss_dssp             HHHHHHHHHHHHH-HHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEeCCCEEeChhhccCCCCCccHHHHHHHHhCHH
Confidence            1111223345566 6799999999999999999999999999999999999999999999999997   89999999999


Q ss_pred             HHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccC--CCC-CcHHHHH-HHHHHHH-
Q 004972          155 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTD--KLG-SLSEARE-VLKLARL-  229 (721)
Q Consensus       155 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~--~~~-~~~~~~~-~~~~~~~-  229 (721)
                      +|++|++||++++|+||+++||||+|||+++++++|.++++++++...++.... +..  ... + ..... .+..+++ 
T Consensus       163 ~A~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~-~~~~~p~~~~-~~~~~~~~~~~k~~  240 (715)
T 1wdk_A          163 NAVEWIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKAKR-QPKLEKLKLN-AIEQMMAFETAKGF  240 (715)
T ss_dssp             HHHHHHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHHTTSSCHHHHH-GGGGSCCSCC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCHHHHHHCCCceEEeChHHHHHHHHHHHHHHhhccCCcchhc-ccccCccccC-chhHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999988621111110 000  000 0 01111 2333444 


Q ss_pred             HHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCceeEE
Q 004972          230 QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVA  309 (721)
Q Consensus       230 ~~~~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~~~~~~~~~~~~~~kI~  309 (721)
                      ..|+++++|||+..+|++++.+...+++++++.|.+.|..++.|+|+++++++|++||+++|.++.+. + .+++++||+
T Consensus       241 ~~~~~~g~~~A~~~~k~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~~~~~~~~-~-~~~~i~kV~  318 (715)
T 1wdk_A          241 VAGQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSASNCLIGLFLNDQELKKKAKVYD-K-IAKDVKQAA  318 (715)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCCCSSEE
T ss_pred             HHHhcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhccccCCC-C-ccccCCEEE
Confidence            35689999999999999999999999999999999999999999999999999999999998765322 2 346789999


Q ss_pred             EEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCCCEEE
Q 004972          310 VIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVI  389 (721)
Q Consensus       310 VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVI  389 (721)
                      |||+|+||++||..++++|++|++||++++.++.+...+++.++.++++|.+++.+.+...++++.+++++.+++||+||
T Consensus       319 VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~~~~~~aDlVI  398 (715)
T 1wdk_A          319 VLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNVDLVV  398 (715)
T ss_dssp             EECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTGGGCSEEE
T ss_pred             EECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCHHHHCCCCEEE
Confidence            99999999999999999999999999999999998888999999999999999888888888899999998899999999


Q ss_pred             EcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCCCHHHHHHH
Q 004972          390 EAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDL  469 (721)
Q Consensus       390 eavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t~~e~~~~~  469 (721)
                      +||||+.++|+++++++.+++++++||+||||+++++++++.+.++++++|+|||+|++.++++|+++++.|++++++.+
T Consensus       399 eaV~e~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la~~~~~~~~~ig~hf~~P~~~~~lvevv~g~~t~~e~~~~~  478 (715)
T 1wdk_A          399 EAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSDLAVATT  478 (715)
T ss_dssp             ECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGGGCSCGGGEEEEECCSSTTTCCEEEEEECSSCCHHHHHHH
T ss_pred             EcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCCCHHHHHHHhcCccceEEEEccCCcccCceEEEEECCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999998899999999999999999999999999999999999


Q ss_pred             HHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHHhhchHHHHHHHHHHHH
Q 004972          470 MTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDK  549 (721)
Q Consensus       470 ~~l~~~lG~~~v~v~d~~gfi~nRl~~~~~~Ea~~l~~~Gv~~~~ID~a~~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~  549 (721)
                      .++++.+|+.|++++|.|||++||++.++++|++.++++|+++++||.++.++|+|||||+++|++|||+.+++.+.+++
T Consensus       479 ~~l~~~lGk~~v~v~d~~Gfi~Nril~~~~~Ea~~l~~~G~~~~~id~~~~~~G~p~Gp~~l~D~vGld~~~~i~~~~~~  558 (715)
T 1wdk_A          479 VAYAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAE  558 (715)
T ss_dssp             HHHHHHTTCEEEEEESCTTTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSSCHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCEeEEEcCCCChhhhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCCCCCHHHHHHHhhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999889999999999999999999999999998


Q ss_pred             hCCCCCCCc--HHHHHHHHcCCCCcccCccccccC-C--CC-CCCCCCCchhHHHHHhhhccCCCCCCCcccChHHHHHH
Q 004972          550 AFPDRSFQS--PLVDLLLKSGRNGKANGKGLYTYE-K--GS-KPKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEM  623 (721)
Q Consensus       550 ~~~~~~~~~--~~l~~~v~~G~~G~k~g~GfY~y~-~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r  623 (721)
                      .+++++.|+  +++++|+++|++|+|||+|||+|+ +  ++ +..+|+++..++...+.     +   ...+++++|.+|
T Consensus       559 ~~~~~~~~~~~~~l~~~v~~g~lG~k~g~GfY~y~~~~~g~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~i~~r  630 (715)
T 1wdk_A          559 GFPDRMKDDRRSAIDALYEAKRLGQKNGKGFYAYEADKKGKQKKLVDSSVLEVLKPIVY-----E---QRDVTDEDIINW  630 (715)
T ss_dssp             HCHHHHCCSSCCHHHHHHHTTCCBTTTTBSSSEEC-------CEECCTHHHHHHGGGCC-----C---CCCCCHHHHHHH
T ss_pred             hcCCccCCChHHHHHHHHhCchhhhcCCcEEEecccCcCCCCcCCCCHHHHHHHhhhcc-----C---ccCCCHHHHHHH
Confidence            887766677  899999999999999999999996 3  22 34567777666543211     1   123678999999


Q ss_pred             HHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHc
Q 004972          624 ILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSRFLEERATK  703 (721)
Q Consensus       624 ~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~  703 (721)
                      ++++++||+++||+|||+.+++|||.+|++|+|||+|+||||+|+|.+|++.+++.++++ +.+|++|+|+++|++|+++
T Consensus       631 ~l~~~~nea~~~l~egi~~~~~diD~~~~~G~g~p~~~GGp~~~~d~~G~~~~~~~~~~~-~~~g~~~~p~~~l~~~~~~  709 (715)
T 1wdk_A          631 MMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVALADQY-AELGALYHPTAKLREMAKN  709 (715)
T ss_dssp             HHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHTCCCGGGCCHHHHHHHHCHHHHHHHHHHT-GGGCGGGCCCHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcCCcCCHHHHHHHHHhCCCCCCCCCCHHHHHHHhCHHHHHHHHHHH-HhcCCCCCCCHHHHHHHHc
Confidence            999999999999999999999999999999999999999999999999999999999999 8899999999999999999


Q ss_pred             CCCCcC
Q 004972          704 GIPLSA  709 (721)
Q Consensus       704 g~~f~~  709 (721)
                      |++||.
T Consensus       710 g~~f~~  715 (715)
T 1wdk_A          710 GQSFFG  715 (715)
T ss_dssp             TCCSCC
T ss_pred             CCCCCC
Confidence            999984

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=100.00  E-value=2.3e-80  Score=679.18  Aligned_cols=414  Identities=28%  Similarity=0.471  Sum_probs=365.0

Q ss_pred             HHHHhhhhcCCCCCCC---C-CCCCCCceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhh
Q 004972          282 VFFAQRATSKVPNVTD---I-GLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT  357 (721)
Q Consensus       282 aF~~~r~~~~~~~~~~---~-~~~~~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~  357 (721)
                      +|.++|..+++.....   + ...+++++||+|||+|+||++||..++++|++|++||++++   ++...+++.++.+++
T Consensus        27 ~~~a~~~~~~w~~p~~~~~~~~~~~~~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e---~a~~~i~~~l~~~~~  103 (460)
T 3k6j_A           27 LMEAHSLAGQWSLPNDRGDHTNSEAYDVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ---RCKQELEVMYAREKS  103 (460)
T ss_dssp             HHHTTCCTTSCBCSTTSCBTTSCCCCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH---HHHHHHHHHHHHHHH
T ss_pred             HHhHHHhhccccCCCCccccccCCcccCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH---HHHHHHHHHHHHHHH
Confidence            3446666655533211   1 23456789999999999999999999999999999999998   456678888899999


Q ss_pred             cCCCCHHHHHHhhcCceeccCccccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCc
Q 004972          358 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDR  437 (721)
Q Consensus       358 ~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r  437 (721)
                      +|.++.++.+..+++++++++++++++||+|||||||++++|+++++++.+++++++||+||||+++++++++.+.+|++
T Consensus       104 ~G~l~~~~~~~~~~~i~~t~dl~al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSsl~i~~ia~~~~~p~r  183 (460)
T 3k6j_A          104 FKRLNDKRIEKINANLKITSDFHKLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEISSVLRDPSN  183 (460)
T ss_dssp             TTSCCHHHHHHHHTTEEEESCGGGCTTCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHHTTSSSGGG
T ss_pred             cCCCCHHHHHHHhcceEEeCCHHHHccCCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCChhHHHHHHhccCCcc
Confidence            99999998889999999999998899999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCCCCCCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHH-HcCCCHHHHH
Q 004972          438 IIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLV-SLGVDVFRID  516 (721)
Q Consensus       438 ~ig~h~~~p~~~~~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~gfi~nRl~~~~~~Ea~~l~-~~Gv~~~~ID  516 (721)
                      |+|+|||+|++.++++||+++..|++++++.+.++++.+||+|++++|.|||++||++.++++||+.++ ++|++|++||
T Consensus       184 ~iG~HffnPv~~m~LvEIv~g~~Ts~e~~~~~~~l~~~lGk~~v~v~d~pGfi~Nril~~~~~EA~~l~~~~Ga~~e~ID  263 (460)
T 3k6j_A          184 LVGIHFFNPANVIRLVEIIYGSHTSSQAIATAFQACESIKKLPVLVGNCKSFVFNRLLHVYFDQSQKLMYEYGYLPHQID  263 (460)
T ss_dssp             EEEEECCSSTTTCCEEEEECCSSCCHHHHHHHHHHHHHTTCEEEEESSCCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred             eEEEEecchhhhCCEEEEEeCCCCCHHHHHHHHHHHHHhCCEEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999 6699999999


Q ss_pred             HHHHhcCCCccHHHHHHhhchHHHHHHHHHHHHhCCCCCCCcHHHHHHHHcCCCCcccCccccccCCCCC-CCCCCCchh
Q 004972          517 SAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDLLLKSGRNGKANGKGLYTYEKGSK-PKPDPSVLP  595 (721)
Q Consensus       517 ~a~~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~~-~~~~~~~~~  595 (721)
                      ++++++|+|||||+++|++|||+.+++.+.+    .  ..+++++++||++|++|+|||+|||+|+++++ +.+++++..
T Consensus       264 ~a~~~~G~pmGPf~l~D~vGlD~~~~i~~~~----~--~~~~~~l~~~v~~G~lG~KtG~GFY~y~~~~~~~~~~~~~~~  337 (460)
T 3k6j_A          264 KIITNFGFLMGPMTVADMNGFDVMEKLKKEN----G--LEPNPIEKEMWRLKRYGRKTNKGFYKYDDKTQRKENDTEMEQ  337 (460)
T ss_dssp             HHHHHHTBSSCHHHHHHHHCTHHHHHHHHHS----C--CCCCHHHHHHHHTTCCBGGGTBSSSEECTTTCCEECCHHHHH
T ss_pred             HHHHHcCCCcCHHHHHHHhchHHHHHHHHHh----c--cCchHHHHHHHHCCCCeeecCCEEEECCCCCCCCCCCHHHHH
Confidence            9998899999999999999999999998776    1  23569999999999999999999999987543 456777766


Q ss_pred             HHHHHhhhccCCCCCCCcccChHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHH
Q 004972          596 IIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANY  675 (721)
Q Consensus       596 ~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~  675 (721)
                      ++...+...++.    ...+++++|.+|++++++||+++||+|||+.+++|||.+|++|+|||+|+||||+|+|.+|++.
T Consensus       338 ~~~~~~~~~~~~----~~~~~~~~i~~r~l~~~~nea~~~l~egi~~~~~diD~~~~~G~GfP~~~GGp~~~~d~~G~~~  413 (460)
T 3k6j_A          338 IIRRVSQNAKSN----IQIINDQDVINFMLYPTVNEGYRCIEEGVISNESLIDIMFILGFGWPIHSGGPMRFGKTEGLDK  413 (460)
T ss_dssp             HHHHC---CCCS----SCCCSHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTCCCSEETTEECBCSSCBSSHH
T ss_pred             HHHHHHHhcCCC----cccCChHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhHHHHhcCCCCccccCHHHHHHHhCHHH
Confidence            665433222222    2357889999999999999999999999998999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCC--CCCCHHHHHHHHcCCCCc
Q 004972          676 VYTSLKKWSQLYGNF--FKPSRFLEERATKGIPLS  708 (721)
Q Consensus       676 ~~~~~~~~~~~~~~~--~~p~~~l~~~~~~g~~f~  708 (721)
                      +++.++.|++.+|++  |+|+++|++|+++|+.|-
T Consensus       414 ~~~~l~~l~~~~g~~~~~~p~~~L~~~a~~g~~~~  448 (460)
T 3k6j_A          414 IANMLVHWSSLEPKESAYIVADALKTANVSTGSSG  448 (460)
T ss_dssp             HHHHHHHHHHHCTTCGGGSCCHHHHHHC-------
T ss_pred             HHHHHHHHHHHhCCCCCCCCCHHHHHHHHcCCCcc
Confidence            999999999999997  999999999999888764

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=100.00  E-value=2.9e-75  Score=649.87  Aligned_cols=433  Identities=33%  Similarity=0.533  Sum_probs=373.9

Q ss_pred             CCHHHHHHHHHHHHhhhhcCCCCC---CCCCCCCCCceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHH
Q 004972          272 MLDTSRGLVHVFFAQRATSKVPNV---TDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI  348 (721)
Q Consensus       272 ~s~~~~~~i~aF~~~r~~~~~~~~---~~~~~~~~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~  348 (721)
                      .|++++++++.|+.+|..+|.++.   ...+..+++++||+|||+|.||++||..++++|++|++||++++.++.+.+.+
T Consensus         1 ~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i   80 (463)
T 1zcj_A            1 ASGQAKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKII   80 (463)
T ss_dssp             -CHHHHHHHHHHHGGGGGGSCBCTTCCBTTTCCCCCCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCCccCCCccccccCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHH
Confidence            489999999999999999985531   11123456789999999999999999999999999999999999999988888


Q ss_pred             HHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHH
Q 004972          349 EANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV  428 (721)
Q Consensus       349 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l  428 (721)
                      ++.++..+++|.+++.+.+..  ....+++++.+++||+||+|||++.++|+++++++.+++++++||+||||+++++++
T Consensus        81 ~~~l~~~~~~g~~~~~~~~~~--~~~i~~~~~~~~~aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~~~~~~l  158 (463)
T 1zcj_A           81 TFTLEKEASRAHQNGQASAKP--KLRFSSSTKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDI  158 (463)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCC--CEEEESCGGGGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHH--HhhhcCCHHHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCcCHHHH
Confidence            777777666554332111111  123466778889999999999999999999999999999999999999999999999


Q ss_pred             hcccCCCCcEEEecCCCCCCCCCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHc
Q 004972          429 GEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSL  508 (721)
Q Consensus       429 ~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~gfi~nRl~~~~~~Ea~~l~~~  508 (721)
                      ++.+.++++++|+|||+|++.++++|+++++.|++++++.+.++++.+|++++++++.+||++||++.++++|+++++++
T Consensus       159 a~~~~~~~~~ig~hf~~P~~~~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~~~~gfi~Nrll~~~~~ea~~l~~~  238 (463)
T 1zcj_A          159 ASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEE  238 (463)
T ss_dssp             HTTSSCGGGEEEEEECSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEBCCSTTTTHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhcCCcceEEeecCCCcccceeEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEECCCccHHHHHHHHHHHHHHHHHHHc
Confidence            99888899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHhcCCCccHHHHHHhhchHHHHHHHHHHH---HhCC-------CCC-CCcHHHHHHHHcCCCCcccCcc
Q 004972          509 GVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFD---KAFP-------DRS-FQSPLVDLLLKSGRNGKANGKG  577 (721)
Q Consensus       509 Gv~~~~ID~a~~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~---~~~~-------~~~-~~~~~l~~~v~~G~~G~k~g~G  577 (721)
                      |+++++||.+++++|+|+|||+++|.+|||+.+++++.+.   +.++       +.. .+++++++||++|++|+|||+|
T Consensus       239 G~~~~~id~~~~~~g~p~Gp~~l~D~~GlD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~g~lG~k~g~G  318 (463)
T 1zcj_A          239 GSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRYSPLGDMLCEAGRFGQKTGKG  318 (463)
T ss_dssp             TCCHHHHHHHHHHHTCSSCHHHHHHHHCHHHHHHHHHHTTSSSSCCCTTCCTTEETTEECCTHHHHHHHTTCCBGGGTBS
T ss_pred             CCCHHHHHHHHHHcCCCCcHHHHHHHcchHHHHHHHHHHhhhcccccccccccccccccchHHHHHHHHCCCCeeecCCe
Confidence            9999999999999999999999999999999999998872   2211       111 1368999999999999999999


Q ss_pred             ccccCCCCC--CCCCCCchhHHHHHhhhccCCCCCCCcccChHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHcc
Q 004972          578 LYTYEKGSK--PKPDPSVLPIIEECRRLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGM  655 (721)
Q Consensus       578 fY~y~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~  655 (721)
                      ||+|+++++  ...++++..++.......++.+    ..+++++|+||++++++|||++|++|||+.+++|||.+|++|+
T Consensus       319 fy~y~~~g~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~g~i~~Rll~~~~nEa~~~l~eGIa~~~~dID~a~~~G~  394 (463)
T 1zcj_A          319 WYQYDKPLGRIHKPDPWLSTFLSQYREVHHIEQ----RTISKEEILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGY  394 (463)
T ss_dssp             SEEESSTTCSCEEECHHHHHHHHHHHHHTTCCC----CCCCHHHHHHHHHHHHHHHHHHHHHTTSBSCHHHHHHHHHHHS
T ss_pred             eccCCCCCCCCCCCCHHHHHHHHHHHHHcCCCc----ccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhCC
Confidence            999964222  2356666666654433222222    2367899999999999999999999999988999999999999


Q ss_pred             CCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCC--CCCCCHHHHHHHHcCCCCc-CC
Q 004972          656 SFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN--FFKPSRFLEERATKGIPLS-AP  710 (721)
Q Consensus       656 g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~--~~~p~~~l~~~~~~g~~f~-~~  710 (721)
                      |||+|+||||+++|.+|++.++++++.|++.+|+  +|+|+++|++|+++|++|. .|
T Consensus       395 G~p~~~gGP~~~~D~~Gl~~~~~~~~~l~~~~g~~~~~~p~~lL~~~v~~G~~~~~~~  452 (463)
T 1zcj_A          395 GWPRHKGGPMFYAASVGLPTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQGSPPLKEW  452 (463)
T ss_dssp             CCCGGGCCHHHHHHHHCHHHHHHHHHHHHHHCTTCGGGSCCHHHHHHHHTTCCCGGGH
T ss_pred             CCCCCCcChHHHHHHhCHHHHHHHHHHHHHHhCCCccCCCCHHHHHHHHcCCCcccch
Confidence            9999999999999999999999999999999998  8999999999999999996 45

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=100.00  E-value=1.8e-74  Score=642.93  Aligned_cols=404  Identities=31%  Similarity=0.491  Sum_probs=357.2

Q ss_pred             CCceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcccc
Q 004972          303 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  382 (721)
Q Consensus       303 ~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l  382 (721)
                      ++++||+|||+|+||++||..++++|++|++||++++.++++.+.+++.+++++++|.++..+.+..+++++++++++.+
T Consensus         3 m~~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   82 (483)
T 3mog_A            3 LNVQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIHAL   82 (483)
T ss_dssp             -CCCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGGGG
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHHHh
Confidence            45789999999999999999999999999999999999999999999999999999999999888999999999999889


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCCC
Q 004972          383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS  462 (721)
Q Consensus       383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t~  462 (721)
                      ++||+||+||||+.++|+++++++.+++++++||+||||+++++++++.+.++++++|+|||+|++.++++|++++..|+
T Consensus        83 ~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i~~ia~~~~~p~~~ig~hf~~Pa~v~~Lvevv~g~~Ts  162 (483)
T 3mog_A           83 AAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISITAIAAEIKNPERVAGLHFFNPAPVMKLVEVVSGLATA  162 (483)
T ss_dssp             GGCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTTTSSSGGGEEEEEECSSTTTCCEEEEEECSSCC
T ss_pred             cCCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCHHHHHHHccCccceEEeeecChhhhCCeEEEecCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHH
Q 004972          463 AQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVA  540 (721)
Q Consensus       463 ~e~~~~~~~l~~~lG~~~v~v~d~~gfi~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~G~p~Gpf~~~D~~Gld~~  540 (721)
                      +++++.+.++++.+|+.+++++|.|||++||++.++++|++.++++|. |+++||+++ .++|||||||+++|++|||+.
T Consensus       163 ~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~Nr~l~~~~~Ea~~l~~~g~~~~~~id~a~~~~~G~p~GP~~l~D~~Gld~~  242 (483)
T 3mog_A          163 AEVVEQLCELTLSWGKQPVRCHSTPGFIVNRVARPYYSEAWRALEEQVAAPEVIDAALRDGAGFPMGPLELTDLIGQDVN  242 (483)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEESCTTTTHHHHTHHHHHHHHHHHHTTCSCHHHHHHHHHHTTCCSSCHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHHHhCCEEEEEeccCcchHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhcCCCCCCHHHHHHHhchHHH
Confidence            999999999999999999999999999999999999999999999976 899999999 689999999999999999999


Q ss_pred             HHHHHHHHHhC-CCCC-CCcHHHHHHHHcCCCCcccCccccccCCCCCCCC-----CCCchhHHHHH-------------
Q 004972          541 AATSKEFDKAF-PDRS-FQSPLVDLLLKSGRNGKANGKGLYTYEKGSKPKP-----DPSVLPIIEEC-------------  600 (721)
Q Consensus       541 ~~~~~~l~~~~-~~~~-~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~~~~~-----~~~~~~~~~~~-------------  600 (721)
                      +++++.+++.+ +++. .|++++++|+++|++|+|||+|||+|+++++...     ++....++...             
T Consensus       243 ~~v~~~~~~~~~~~~~~~~~~~~~~~v~~g~lG~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  322 (483)
T 3mog_A          243 FAVTCSVFNAFWQERRFLPSLVQQELVIGGRLGKKSGLGVYDWRAEREAVVGLEAVSDSFSPMKVEKKSDGVTEIDDVLL  322 (483)
T ss_dssp             HHHHHHHHHHTTSCGGGCCCHHHHHHHHTTCCBGGGTBSSSBTTSCCCCCCCCCCCCGGGCCSCEEECSTTEEEETTEEE
T ss_pred             HHHHHHHHHHhcCCCccCchHHHHHHHHCCCCceeCCCEeEECCCCCCCcccccCCCchhHHHHHHHHhcccccccchhh
Confidence            99999998876 3433 4789999999999999999999999976422111     11110000000             


Q ss_pred             --------------hh----hccC--------C------------------CCCC-Cc--ccChHHHHHHHHHHHHHHHH
Q 004972          601 --------------RR----LSNI--------M------------------PGGK-PI--SVTEKEIVEMILFPVVNESC  633 (721)
Q Consensus       601 --------------~~----~~~~--------~------------------~~~~-~~--~~~~~~i~~r~~~~~~~ea~  633 (721)
                                    ..    ..++        .                  ..++ +.  .-++++|+||++++++|||+
T Consensus       323 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~vev~~~~~t~~~~~~~~~~~~~~~gk~~~~~~d~~g~i~~Rll~~~~nEA~  402 (483)
T 3mog_A          323 IETQGETAQALAIRLARPVVVIDKMAGKVVTIAAAAVNPDSATRKAIYYLQQQGKTVLQIADYPGMLIWRTVAMIINEAL  402 (483)
T ss_dssp             EECSSSCHHHHHHHHTSCEEEEECCSSSEEEEEECTTSCHHHHHHHHHHHHTTTCEEEECCCCTTTTHHHHHHHHHHHHH
T ss_pred             cccCCcchHHHhhccccceeeeeccccceEEEecCCCCCHHHHHHHHHHHHHcCCceeeecccccHHHHHHHHHHHHHHH
Confidence                          00    0000        0                  0001 01  12578999999999999999


Q ss_pred             HHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCC-CCCCCHHHHHHHHcCCCCcCC
Q 004972          634 RVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPSRFLEERATKGIPLSAP  710 (721)
Q Consensus       634 ~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~~~l~~~~~~g~~f~~~  710 (721)
                      +|++|||+ |++|||.+|++|+|||+   |||+|+|.+|+|.++++++.|++.+|+ +|+|+++|++|+++|+.||+-
T Consensus       403 ~~l~eGva-s~~diD~a~~~G~G~P~---GPl~~~D~~Gld~~~~~~~~l~~~~g~~~~~p~~lL~~~v~~G~~~~~~  476 (483)
T 3mog_A          403 DALQKGVA-SEQDIDTAMRLGVNYPY---GPLAWGAQLGWQRILRLLENLQHHYGEERYRPCSLLRQRALLESGYESE  476 (483)
T ss_dssp             HHHHTTSS-CHHHHHHHHHHHSCCSS---CHHHHHHHHCHHHHHHHHHHHHHHHCCGGGCCCHHHHHHHHHHTCC---
T ss_pred             HHHHcCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHcCCCCCCC
Confidence            99999998 99999999999999999   999999999999999999999999986 999999999999999999975

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=100.00  E-value=4.7e-53  Score=443.11  Aligned_cols=268  Identities=21%  Similarity=0.332  Sum_probs=238.4

Q ss_pred             CceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHH-HHHHhhcCceeccCc-cc
Q 004972          304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD-KANNALKMLKGVLDY-SE  381 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~~~-~~  381 (721)
                      .++||+|||+|+||++||..++.+|++|+++|++++.++++.+++++.+..++++|.++.. ..+..+++|+.++++ ++
T Consensus         5 ~~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a   84 (319)
T 3ado_A            5 AAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEA   84 (319)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHH
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhH
Confidence            4679999999999999999999999999999999999999999999999999999988643 456677899999998 57


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCC
Q 004972          382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT  461 (721)
Q Consensus       382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t  461 (721)
                      +++||+|||||||++++|+++|++|++++++++||+||||+++++++++.+.+|+||+|+|||||++.+|+||||+++.|
T Consensus        85 ~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~is~ia~~~~~p~r~ig~HffNP~~~m~LVEiv~g~~T  164 (319)
T 3ado_A           85 VEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKLFTGLAHVKQCIVAHPVNPPYYIPLVELVPHPET  164 (319)
T ss_dssp             TTTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCCHHHHHTTCTTGGGEEEEEECSSTTTCCEEEEEECTTC
T ss_pred             hccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhhccchhhhhhccCCCcEEEecCCCCccccchHHhcCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCeeEEE-cCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCC---ccHHHHHHhh
Q 004972          462 SAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLP---IGPFQLLDLA  535 (721)
Q Consensus       462 ~~e~~~~~~~l~~~lG~~~v~v-~d~~gfi~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~G~p---~Gpf~~~D~~  535 (721)
                      ++++++++..|++.+|++|+++ +|.||||+||++.++++||++++++|+ +++|||.++ .++|+|   ||||+++|++
T Consensus       165 s~~~~~~~~~~~~~~gk~pv~v~kd~pGFi~NRl~~~~~~EA~~lv~eGvas~edID~~~~~g~g~~~a~mGPf~~~Dl~  244 (319)
T 3ado_A          165 SPATVDRTHALMRKIGQSPVRVLKEIDGFVLNRLQYAIISEAWRLVEEGIVSPSDLDLVMSDGLGMRYAFIGPLETMHLN  244 (319)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEECSSCCTTTTHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHTTHHHHHTTSCHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHhCCccCCcCCCCCCEeHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCCcchhhhhhhc
Confidence            9999999999999999999866 899999999999999999999999987 999999999 789887   8999999999


Q ss_pred             chHHHHHHHHHHHHhCCCCCCCcHHHHHH-HHcCCCCcccCccccccC
Q 004972          536 GYGVAAATSKEFDKAFPDRSFQSPLVDLL-LKSGRNGKANGKGLYTYE  582 (721)
Q Consensus       536 Gld~~~~~~~~l~~~~~~~~~~~~~l~~~-v~~G~~G~k~g~GfY~y~  582 (721)
                      |+|+...+- .+.          +.++.+ -+.|+.+.++|+++|+|.
T Consensus       245 G~~~~~~~~-~~~----------~~~~~~~~~~~~~p~~~~~~~~k~~  281 (319)
T 3ado_A          245 AEGMLSYCD-RYS----------EGMKRVLKSFGSIPEFSGATVEKVN  281 (319)
T ss_dssp             TTSHHHHHH-HHH----------HHHHHHHHTCCCCCCCCHHHHHHHH
T ss_pred             CccHHHHHH-Hhh----------HhHHHHHHHcCcccccchHHHHHHH
Confidence            998765442 221          122222 233666666666666553

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=100.00  E-value=1.3e-52  Score=436.69  Aligned_cols=257  Identities=32%  Similarity=0.422  Sum_probs=239.2

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  384 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  384 (721)
                      -+||+|||+|+||++||..++ +|++|++||++++.++++.+.       +          .+..+++++++++++++++
T Consensus        12 ~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~-------l----------~~~~~~~i~~~~~~~~~~~   73 (293)
T 1zej_A           12 HMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQ-------I----------PEELLSKIEFTTTLEKVKD   73 (293)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHH-------S----------CGGGGGGEEEESSCTTGGG
T ss_pred             CCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHH-------H----------HHHHhCCeEEeCCHHHHcC
Confidence            479999999999999999999 999999999999998887543       0          1334567888888877999


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCCCHH
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQ  464 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t~~e  464 (721)
                      ||+|||||||+.++|+.+|++++..  +++|++||||+++++++++.+.++.+++|+|||+|++.++++|+++++.|+++
T Consensus        74 aDlVieavpe~~~vk~~l~~~l~~~--~~~IlasntSti~~~~~a~~~~~~~r~~G~Hf~~Pv~~~~lveiv~g~~t~~~  151 (293)
T 1zej_A           74 CDIVMEAVFEDLNTKVEVLREVERL--TNAPLCSNTSVISVDDIAERLDSPSRFLGVHWMNPPHVMPLVEIVISRFTDSK  151 (293)
T ss_dssp             CSEEEECCCSCHHHHHHHHHHHHTT--CCSCEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEEEEEECTTCCHH
T ss_pred             CCEEEEcCcCCHHHHHHHHHHHhcC--CCCEEEEECCCcCHHHHHHHhhcccceEeEEecCccccCCEEEEECCCCCCHH
Confidence            9999999999999999999999887  89999999999999999998889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHH-HhcCCCc---cHHHHHHhhchHHH
Q 004972          465 VILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPI---GPFQLLDLAGYGVA  540 (721)
Q Consensus       465 ~~~~~~~l~~~lG~~~v~v~d~~gfi~nRl~~~~~~Ea~~l~~~Gv~~~~ID~a~-~~~G~p~---Gpf~~~D~~Gld~~  540 (721)
                      +++++.++++.+|++|++++|.  |++||++.++++||+.++++|+++++||.++ .++|+|+   |||+++|++|||++
T Consensus       152 ~~~~~~~l~~~lGk~~v~v~d~--fi~Nrll~~~~~EA~~l~~~Gv~~e~id~~~~~g~g~~~~~~GP~~l~D~~Gld~~  229 (293)
T 1zej_A          152 TVAFVEGFLRELGKEVVVCKGQ--SLVNRFNAAVLSEASRMIEEGVRAEDVDRVWKHHLGLLYTLFGPLGNLDYIGLDVA  229 (293)
T ss_dssp             HHHHHHHHHHHTTCEEEEEESS--CHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHcCCeEEEeccc--ccHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCCCCCCHHHHHHHhchHHH
Confidence            9999999999999999999987  9999999999999999999999999999999 7999999   99999999999999


Q ss_pred             HHHHHHHHHhCCCC-CCCcHHHHHHHHcCCCCcccCccccccCC
Q 004972          541 AATSKEFDKAFPDR-SFQSPLVDLLLKSGRNGKANGKGLYTYEK  583 (721)
Q Consensus       541 ~~~~~~l~~~~~~~-~~~~~~l~~~v~~G~~G~k~g~GfY~y~~  583 (721)
                      +++++.+++.+++. +.|++++++|+++|++|+|+|+|||+|++
T Consensus       230 ~~~~~~l~~~~~~~~~~~~~~l~~~v~~G~lG~Ktg~Gfy~y~~  273 (293)
T 1zej_A          230 YYASLYLYKRFGDEKFKPPEWLQEKIKKGEVGVKAGKGIYEYGP  273 (293)
T ss_dssp             HHHHHHHHHHHCCGGGSCCHHHHHHHHTTCCBGGGTBSSSBCCT
T ss_pred             HHHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCEeeecCc
Confidence            99999999998874 44889999999999999999999999954

>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}

Probab=100.00  E-value=3.2e-52  Score=428.63  Aligned_cols=247  Identities=29%  Similarity=0.383  Sum_probs=225.4

Q ss_pred             EEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccch
Q 004972            6 VTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD   84 (721)
Q Consensus         6 v~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   84 (721)
                      |.+|+ +|+|++|||||| +.|+||.+|+++|.++++++++|+++|+|||||.|++||+|+|++++.....  .......
T Consensus         2 vl~E~-~dgVa~itlnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~--~~~~~~~   78 (254)
T 3hrx_A            2 VLKER-QDGVLVLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTGAGRAFSAGQDLTEFGDRKP--DYEAHLR   78 (254)
T ss_dssp             EEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGTTTSCC--CHHHHTH
T ss_pred             eEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCcccCccHHHhcccch--hhHHHHH
Confidence            67888 799999999999 5899999999999999999999999999999999999999999999865322  1223334


Q ss_pred             HHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHHHHH
Q 004972           85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMML  161 (721)
Q Consensus        85 ~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~l~l  161 (721)
                      ..+.++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|+|++|..+|++|++
T Consensus        79 ~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~lll  157 (254)
T 3hrx_A           79 RYNRVV-EALSGLEKPLVVAVNGVAAGAGMSLALWGDLRLAAVGASFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELLL  157 (254)
T ss_dssp             HHHHHH-HHHHTCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHH-HHHHhCCCCEEEEECCEeeehhhhhhhccceeeEcCCCEEEchhhCcCcCCcccHHHHHHHHhCcchHHHHhh
Confidence            455666 6799999999999999999999999999999999999999999999999997   899999999999999999


Q ss_pred             cCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChhH
Q 004972          162 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH  241 (721)
Q Consensus       162 tg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~  241 (721)
                      ||++++|+||+++||||+|||++++++++.++++++++.+|.+                                    .
T Consensus       158 tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a------------------------------------~  201 (254)
T 3hrx_A          158 LSPRLSAEEALALGLVHRVVPAEKLMEEALSLAKELAQGPTRA------------------------------------Y  201 (254)
T ss_dssp             HCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHH------------------------------------H
T ss_pred             cCcccCHHHHHHCCCeEEecCcHHHHHHHHHHHHHhhccchHH------------------------------------H
Confidence            9999999999999999999999999999999999999988643                                    3


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004972          242 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  292 (721)
Q Consensus       242 ~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  292 (721)
                      ..+|++++.+...+++++++.|...+..++.|+|++|++++|++||+|++.
T Consensus       202 ~~~K~~~~~~~~~~~~~~l~~e~~~~~~~~~s~d~~Eg~~AF~eKR~P~f~  252 (254)
T 3hrx_A          202 ALTKKLLLETYRLSLTEALALEAVLQGQAGQTQDHEEGVRAFREKRPPRFQ  252 (254)
T ss_dssp             HHHHHHHHHGGGSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCCC
Confidence            356788999999999999999999999999999999999999999998753

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=100.00  E-value=1.9e-52  Score=438.18  Aligned_cols=275  Identities=29%  Similarity=0.422  Sum_probs=255.7

Q ss_pred             CceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcC-CCCHHHHHHhhcCceeccCc-cc
Q 004972          304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRG-KLTQDKANNALKMLKGVLDY-SE  381 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~i~~~~~~-~~  381 (721)
                      .++||+|||+|.||++||..++++|++|++||++++.++++.+.+.+.+...++++ .++..+.+....++..++++ +.
T Consensus         3 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~   82 (283)
T 4e12_A            3 GITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQA   82 (283)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHH
Confidence            47899999999999999999999999999999999999999999988888888887 77777777777888888888 46


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCC
Q 004972          382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT  461 (721)
Q Consensus       382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t  461 (721)
                      +++||+||+|||++.+.++.+++++.+++++++|++||||+++++++++.+.++.+++|+|||+|++.++++|++++..|
T Consensus        83 ~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~~la~~~~~~~~~ig~h~~~p~~~~~lvevv~~~~t  162 (283)
T 4e12_A           83 VKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDLVGYTGRGDKFLALHFANHVWVNNTAEVMGTTKT  162 (283)
T ss_dssp             TTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHHHHSCGGGEEEEEECSSTTTSCEEEEEECTTS
T ss_pred             hccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEccCCCcccCceEEEEeCCCC
Confidence            89999999999999999999999999999999999999999999999998888999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCeeEEE-cCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchH
Q 004972          462 SAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYG  538 (721)
Q Consensus       462 ~~e~~~~~~~l~~~lG~~~v~v-~d~~gfi~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~G~p~Gpf~~~D~~Gld  538 (721)
                      ++++++.+.++++.+|+.++++ ++.|||++||++.++++||++++++|+ +|++||+++ .++|+|+|||+++|++|||
T Consensus       163 ~~~~~~~~~~l~~~~g~~~v~v~~~~~g~i~nr~~~~~~~ea~~l~~~g~~~~~~id~~~~~~~g~~~Gp~~~~D~~Gld  242 (283)
T 4e12_A          163 DPEVYQQVVEFASAIGMVPIELKKEKAGYVLNSLLVPLLDAAAELLVDGIADPETIDKTWRIGTGAPKGPFEIFDIVGLT  242 (283)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEECSSCCTTTTHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHCCSSCHHHHHHHHCHH
T ss_pred             CHHHHHHHHHHHHHcCCEEEEEecCCCCEEehHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCCcCHHHHHHhccHH
Confidence            9999999999999999999999 899999999999999999999999975 999999999 7999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCC-CCcHHHHHHHHcCCCCcccCcccccc
Q 004972          539 VAAATSKEFDKAFPDRS-FQSPLVDLLLKSGRNGKANGKGLYTY  581 (721)
Q Consensus       539 ~~~~~~~~l~~~~~~~~-~~~~~l~~~v~~G~~G~k~g~GfY~y  581 (721)
                      +++++.++   ..++.. .|++++++||++|++|+|||+|||+|
T Consensus       243 ~~~~~~~~---~~~~~~~~~~~~~~~~v~~g~lG~k~g~Gfy~y  283 (283)
T 4e12_A          243 TAYNISSV---SGPKQREFAAYLKENYIDKGKLGLATGEGFYRY  283 (283)
T ss_dssp             HHHHHHHT---SCHHHHHHHHHHHHHTGGGTCCBGGGTBSSSBC
T ss_pred             HHHHHHhc---cccCcccCchHHHHHHHHCCCCceeCCeEeecC
Confidence            99999883   222222 27789999999999999999999998

>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=100.00  E-value=5.6e-52  Score=430.10  Aligned_cols=251  Identities=25%  Similarity=0.307  Sum_probs=220.6

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCc---c
Q 004972            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD---V   79 (721)
Q Consensus         4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~---~   79 (721)
                      ++|.+++ ++||++||||||+ .|+||.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++........   .
T Consensus        15 e~il~~~-~~gVa~itlnRP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~   93 (274)
T 4fzw_C           15 EFILSHV-EKGVMTLTLNRPERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTGAGRGFCAGQDLNDRNVDPTGPAPDLG   93 (274)
T ss_dssp             -CEEEEE-ETTEEEEEECCTTTTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCCC---------CCCHH
T ss_pred             ccEEEEE-ECCEEEEEEcCcCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcChHhhhccccccchHHH
Confidence            5789999 7999999999996 699999999999999999999999999999999999999999998764322211   1


Q ss_pred             cccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHH
Q 004972           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKA  156 (721)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a  156 (721)
                      ..+.+..+.++ +.|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|+|++|..+|
T Consensus        94 ~~~~~~~~~l~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A  172 (274)
T 4fzw_C           94 MSVERFYNPLV-RRLAKLPKPVICAVNGVAAGAGATLALGGDIVIAARSAKFVMAFSKLGLIPDCGGTWLLPRVAGRARA  172 (274)
T ss_dssp             HHHHHTHHHHH-HHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCGGGTTCCCTTTHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHH-HHHHHCCCCEEEEECCceeecCceeeeccceEEECCCCEEECcccCcccCCCccHHHHHHHHhhHHHH
Confidence            12222344555 6789999999999999999999999999999999999999999999999997   8999999999999


Q ss_pred             HHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004972          157 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  236 (721)
Q Consensus       157 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (721)
                      ++|++||++++|+||+++||||+|||++++++++.++|+++++.+|.+                                
T Consensus       173 ~~llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a--------------------------------  220 (274)
T 4fzw_C          173 MGLALLGNQLSAEQAHEWGMIWQVVDDETLADTAQQLARHLATQPTFG--------------------------------  220 (274)
T ss_dssp             HHHHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHTTSCHHH--------------------------------
T ss_pred             HHHHHhCCcCCHHHHHHCCCceEEeChHHHHHHHHHHHHHHHcCCHHH--------------------------------
Confidence            999999999999999999999999999999999999999999988642                                


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004972          237 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  292 (721)
Q Consensus       237 ~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  292 (721)
                          ...+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|.+.
T Consensus       221 ----~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~Egv~AF~eKR~P~f~  272 (274)
T 4fzw_C          221 ----LGLIKQAINSAETNTLDTQLDLERDYQRLAGRSADYREGVSAFLAKRSPQFT  272 (274)
T ss_dssp             ----HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHC-CCCCCC
T ss_pred             ----HHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCCCC
Confidence                3356788999999999999999999999999999999999999999998764

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=100.00  E-value=4.1e-51  Score=432.60  Aligned_cols=283  Identities=33%  Similarity=0.526  Sum_probs=261.3

Q ss_pred             CCCCCceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHH-----HHHHhhcCce
Q 004972          300 LKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD-----KANNALKMLK  374 (721)
Q Consensus       300 ~~~~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~~~~i~  374 (721)
                      .|.++|+||+|||+|.||++||..|+++|++|++||++++.++.+.+.+++.++.++++|.++..     +.+....+++
T Consensus        10 ~~~~~~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~   89 (302)
T 1f0y_A           10 AKKIIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIA   89 (302)
T ss_dssp             --CCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEE
T ss_pred             cccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceE
Confidence            35556889999999999999999999999999999999999999888888888888888877644     4444556788


Q ss_pred             eccCcc-ccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCee
Q 004972          375 GVLDYS-EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLL  453 (721)
Q Consensus       375 ~~~~~~-~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lv  453 (721)
                      .+++++ .+++||+||+|||++.++++.+++++.+++++++||+||+|+++++++++.+.++++++|+||++|++.++++
T Consensus        90 ~~~~~~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~~l~~~~~~~~~~~g~h~~~P~~~~~~~  169 (302)
T 1f0y_A           90 TSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLV  169 (302)
T ss_dssp             EESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEE
T ss_pred             EecCHHHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCCcccEEEEecCCCcccCceE
Confidence            888885 7899999999999999999999999999999999999999999999999988888999999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcC-CCHHHHHHHH-HhcCCCccHHHH
Q 004972          454 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLPIGPFQL  531 (721)
Q Consensus       454 Eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~gfi~nRl~~~~~~Ea~~l~~~G-v~~~~ID~a~-~~~G~p~Gpf~~  531 (721)
                      |+++++.+++++++.+.++++.+|+.++++++.+||++||++.++++|+++++++| +++++||.++ .++|||+|||++
T Consensus       170 ~i~~g~~~~~e~~~~~~~l~~~~G~~~v~~~~~~g~i~nr~l~~~~~Ea~~l~~~g~~~~~~id~~~~~g~g~p~GP~~~  249 (302)
T 1f0y_A          170 EVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFEL  249 (302)
T ss_dssp             EEECCTTCCHHHHHHHHHHHHHTTCEEEEECSCTTTTHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHCCSSCHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHcCCceEEecCcccccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999996 5999999999 899999999999


Q ss_pred             HHhhchHHHHHHHHHHHHhC-CCC-CCCcHHHHHHHHcCCCCcccCccccccC
Q 004972          532 LDLAGYGVAAATSKEFDKAF-PDR-SFQSPLVDLLLKSGRNGKANGKGLYTYE  582 (721)
Q Consensus       532 ~D~~Gld~~~~~~~~l~~~~-~~~-~~~~~~l~~~v~~G~~G~k~g~GfY~y~  582 (721)
                      +|.+|+|+++++++.+++.+ +++ +.|++++++|+++|++|+|+|+|||+|+
T Consensus       250 ~D~~Gld~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~  302 (302)
T 1f0y_A          250 LDYVGLDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK  302 (302)
T ss_dssp             HHHHCHHHHHHHHHHHHHTTTTCGGGCCCHHHHHHHHTTCCBTTTTBSSSBCC
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCCccCcCHHHHHHHHcCCCccccCcEeeeCC
Confidence            99999999999999999988 775 4588999999999999999999999994

>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=100.00  E-value=5.1e-52  Score=426.96  Aligned_cols=249  Identities=30%  Similarity=0.436  Sum_probs=225.2

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccc
Q 004972            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL   81 (721)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   81 (721)
                      ++.+.+++ +++|++||||||+ .|+||.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++......   ..
T Consensus         4 ms~l~ve~-~~~Va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~---~~   79 (258)
T 4fzw_A            4 MSELIVSR-QQRVLLLTLNRPAARNALNNALLMQLVNELEAAATDTSISVCVITGNARFFAAGADLNEMAEKDLA---AT   79 (258)
T ss_dssp             -CEEEEEE-ETTEEEEEEECGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEEECBCHHHHHTCCHH---HH
T ss_pred             CCcEEEEE-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCceeCCCchhhhccchhh---hH
Confidence            34589999 7999999999995 6999999999999999999999999999999999999999999998643211   11


Q ss_pred             cchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHH
Q 004972           82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIE  158 (721)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~  158 (721)
                      .......++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|+|++|..+|++
T Consensus        80 ~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~  158 (258)
T 4fzw_A           80 LNDTRPQLW-ARLQAFNKPLIAAVNGYALGAGCELALLCDVVVAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASK  158 (258)
T ss_dssp             HTCSHHHHH-HHHHTCCSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHH
T ss_pred             HHhHHHHHH-HHHHHCCCCEEEEEcCcceeeeeEeecccceEEECCCCEEECcccCCCcCCCchHHHHHHHHhCHHHHHH
Confidence            122334555 6699999999999999999999999999999999999999999999999997   899999999999999


Q ss_pred             HHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCC
Q 004972          159 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM  238 (721)
Q Consensus       159 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (721)
                      |++||++++|+||+++||||+|||++++++++.++++++++.+|.+                                  
T Consensus       159 llltg~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a----------------------------------  204 (258)
T 4fzw_A          159 MVLSGESITAQQAQQAGLVSDVFPSDLTLEYALQLASKMARHSPLA----------------------------------  204 (258)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHHHHHTTSCHHH----------------------------------
T ss_pred             HHHcCCcCcHHHHHHCCCeeEEeCchHHHHHHHHHHHHHHhCCHHH----------------------------------
Confidence            9999999999999999999999999999999999999999988743                                  


Q ss_pred             hhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004972          239 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  292 (721)
Q Consensus       239 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  292 (721)
                        ...+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|.+.
T Consensus       205 --~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~Eg~~AF~eKR~P~f~  256 (258)
T 4fzw_A          205 --LQAAKQALRQSQEVALQAGLAQERQLFTLLAATEDRHEGISAFLQKRTPDFK  256 (258)
T ss_dssp             --HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred             --HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCCCC
Confidence              3356788999999999999999999999999999999999999999998753

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis}

Probab=100.00  E-value=1.6e-50  Score=417.70  Aligned_cols=253  Identities=26%  Similarity=0.450  Sum_probs=227.6

Q ss_pred             CCCCcEEEE-EecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcCCCCchhhhhccCCC
Q 004972            1 MAAPRVTME-VGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAG   77 (721)
Q Consensus         1 m~~~~v~~~-~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~   77 (721)
                      |++++|.++ . +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.| +.||+|+|++++.... ..
T Consensus         5 m~~~~v~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~-~~   82 (265)
T 3kqf_A            5 LQLQNISVDYA-TPHVVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERAGMN-EE   82 (265)
T ss_dssp             --CCSEEEECC-STTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCHHHHTTCC-HH
T ss_pred             ccCCeEEEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCeeeeCcChHHHhccC-HH
Confidence            668899999 7 7999999999996 6999999999999999999999999999999999 8999999999986532 11


Q ss_pred             cccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHH
Q 004972           78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLS  154 (721)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~  154 (721)
                      ....+....+.++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|+|++|..
T Consensus        83 ~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~  161 (265)
T 3kqf_A           83 QVRHAVSMIRTTM-EMVEQLPQPVIAAINGIALGGGTELSLACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVG  161 (265)
T ss_dssp             HHHHHHHHHHHHH-HHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCcEEECcccccCcCCCccHHHHHHHHhCHH
Confidence            1222333445556 6799999999999999999999999999999999999999999999999997   89999999999


Q ss_pred             HHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004972          155 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  234 (721)
Q Consensus       155 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (721)
                      +|++|++||++++|+||+++||||+|||++++++++.++|+++++.+|.                               
T Consensus       162 ~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~-------------------------------  210 (265)
T 3kqf_A          162 RAKELIYTGRRISAQEAKEYGLVEFVVPVHLLEEKAIEIAEKIASNGPI-------------------------------  210 (265)
T ss_dssp             HHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHH-------------------------------
T ss_pred             HHHHHHHcCCCCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHcCCHH-------------------------------
Confidence            9999999999999999999999999999999999999999999998864                               


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004972          235 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  292 (721)
Q Consensus       235 ~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  292 (721)
                           |+..+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|.+.
T Consensus       211 -----a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~  263 (265)
T 3kqf_A          211 -----AVRLAKEAISNGIQVDLHTGLQMEKQAYEGVIHTKDRLEGLQAFKEKRTPMYK  263 (265)
T ss_dssp             -----HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTTSCCCCC
T ss_pred             -----HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCC
Confidence                 33466788999989999999999999999999999999999999999988753

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}

Probab=100.00  E-value=1.3e-50  Score=417.44  Aligned_cols=252  Identities=37%  Similarity=0.609  Sum_probs=226.0

Q ss_pred             CCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCccccc
Q 004972            3 APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM   82 (721)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (721)
                      ++++.+++ +++|++||||||+.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++...........+
T Consensus         5 ~~~v~~~~-~~~v~~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   83 (261)
T 3pea_A            5 LKFLSVRV-EDHIAVATLNHAPANAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFTSVTEAKQATEL   83 (261)
T ss_dssp             CSSEEEEE-ETTEEEEEECCTTTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSSTTCCHHHHHHH
T ss_pred             ccceEEEE-ECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcCHHHHhhcCchhHHHHH
Confidence            36799999 79999999999966999999999999999999999999999999999999999999998653221111222


Q ss_pred             chHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHHH
Q 004972           83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEM  159 (721)
Q Consensus        83 ~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~l  159 (721)
                      ....+.++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|+|++|..+|++|
T Consensus        84 ~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l  162 (261)
T 3pea_A           84 AQLGQVTF-ERVEKCSKPVIAAIHGAALGGGLEFAMSCHMRFATESAKLGLPELTLGLIPGFAGTQRLPRYVGKAKACEM  162 (261)
T ss_dssp             HHHHHHHH-HHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHH
T ss_pred             HHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHHH
Confidence            23334455 6799999999999999999999999999999999999999999999999997   8999999999999999


Q ss_pred             HHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCCh
Q 004972          160 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP  239 (721)
Q Consensus       160 ~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (721)
                      ++||++++|+||+++||||+|||++++++++.++|+++++.+|.                                    
T Consensus       163 ~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~------------------------------------  206 (261)
T 3pea_A          163 MLTSTPITGAEALKWGLVNGVFAEETFLDDTLKVAKQIAGKSPA------------------------------------  206 (261)
T ss_dssp             HHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHH------------------------------------
T ss_pred             HHcCCCCCHHHHHHCCCccEecCHHHHHHHHHHHHHHHHcCCHH------------------------------------
Confidence            99999999999999999999999999999999999999998864                                    


Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004972          240 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  292 (721)
Q Consensus       240 A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  292 (721)
                      |+..+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|...
T Consensus       207 a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~P~f~  259 (261)
T 3pea_A          207 TARAVLELLQTTKSSHYYEGVQREAQIFGEVFTSEDGREGVAAFLEKRKPSFS  259 (261)
T ss_dssp             HHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTSCCCCC
T ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCC
Confidence            33456788888888889999999999999999999999999999999988753

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0

Probab=100.00  E-value=2e-50  Score=417.17  Aligned_cols=255  Identities=22%  Similarity=0.311  Sum_probs=226.5

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCc-
Q 004972            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD-   78 (721)
Q Consensus         1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~-   78 (721)
                      |+++.|.+++ +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++........ 
T Consensus         1 M~~~~v~~~~-~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   79 (268)
T 3i47_A            1 MSLSDLLYEI-QDKVGLLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGKHFSAGADLTWMQSMANFTEE   79 (268)
T ss_dssp             -CCCSEEEEE-ETTEEEEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECSSCSBCSBCHHHHHHHHTCCHH
T ss_pred             CCCCEEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCeeCCCChhhhhccccccHH
Confidence            8999999999 7999999999996 699999999999999999999999999999999999999999999865322211 


Q ss_pred             -ccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc--ccccccccCHHH
Q 004972           79 -VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG--TQRLPRLVGLSK  155 (721)
Q Consensus        79 -~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~--~~~l~r~~G~~~  155 (721)
                       ..........++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+  ..+|+|++|..+
T Consensus        80 ~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~l~~~vG~~~  158 (268)
T 3i47_A           80 ENLEDSLVLGNLM-YSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSARFCFSEVKLGLIPAVISPYVVRAIGERA  158 (268)
T ss_dssp             HHHHHHHHHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCTTTHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHHH-HHHHhCCCCEEEEECCEEEhHhHHHHHhCCEEEEcCCCEEECcccccCCCcccHHHHHHHHhCHHH
Confidence             111122334555 6799999999999999999999999999999999999999999999999997  448999999999


Q ss_pred             HHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004972          156 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  235 (721)
Q Consensus       156 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (721)
                      |++|++||++++|+||+++||||+|||++++++++.++|++|++.+|.+                               
T Consensus       159 A~~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a-------------------------------  207 (268)
T 3i47_A          159 AKMLFMSAEVFDATRAYSLNLVQHCVPDDTLLEFTLKYASQISNNAPEA-------------------------------  207 (268)
T ss_dssp             HHHHHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSCHHH-------------------------------
T ss_pred             HHHHHHcCCccCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHcCCHHH-------------------------------
Confidence            9999999999999999999999999999999999999999999988643                               


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCC
Q 004972          236 PNMPQHQACLDVIEEGIVHGGYS-GVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  293 (721)
Q Consensus       236 ~~~~A~~~~~~~i~~~~~~~~~~-~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~  293 (721)
                           ...+|++++.....++++ .++.|.+.+..++.|+|++|++++|++||+|...+
T Consensus       208 -----~~~~K~~l~~~~~~~l~~~~~~~e~~~~~~~~~s~d~~eg~~AF~ekR~p~f~~  261 (268)
T 3i47_A          208 -----VKNSKQLAQYVANKKIDEELVRYTASLIAHKRVSDEGQEGLKAFLNKEIPNWNE  261 (268)
T ss_dssp             -----HHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHSHHHHHHHHHHHHTCCCTTC-
T ss_pred             -----HHHHHHHHHhhhcCChhHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCCC
Confidence                 335678888888888887 78999999999999999999999999999988654

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis}

Probab=100.00  E-value=3.3e-50  Score=414.66  Aligned_cols=251  Identities=31%  Similarity=0.440  Sum_probs=227.0

Q ss_pred             CCCCcEEEEEecCc-EEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCc
Q 004972            1 MAAPRVTMEVGNDG-VAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD   78 (721)
Q Consensus         1 m~~~~v~~~~~~~~-v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~   78 (721)
                      |+++.|.++. +++ |++||||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++....... 
T Consensus         6 m~~~~i~~~~-~~~gv~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-   83 (263)
T 3moy_A            6 TTYTTIATSR-PVAGVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSERAFAAGADIAEMVTLTPHQ-   83 (263)
T ss_dssp             CCCSSEEEEC-CSTTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEEESBCHHHHTTCCHHH-
T ss_pred             CCCCeEEEEE-eCCeEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeeCCcChHHHhccCchh-
Confidence            7788899999 566 9999999996 69999999999999999999999999999999999999999999986532111 


Q ss_pred             ccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHH
Q 004972           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSK  155 (721)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~  155 (721)
                        ........++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|+|++|..+
T Consensus        84 --~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~  160 (263)
T 3moy_A           84 --ARERNLLSGW-DSLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADTARFGQPEITLGILPGLGGTQRLTRAVGKAK  160 (263)
T ss_dssp             --HHHTTTTHHH-HHHTTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCSSSTTTHHHHHHCHHH
T ss_pred             --HHHHHHHHHH-HHHHhCCCCEEEEECCEeehHHHHHHHHCCEEEecCCCEEeCcccccCCCCchhHHHHHHHHhCHHH
Confidence              1122233455 6689999999999999999999999999999999999999999999999997   899999999999


Q ss_pred             HHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004972          156 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  235 (721)
Q Consensus       156 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (721)
                      |++|++||++++|+||+++||||+|+|++++++++.++|+++++.+|.                                
T Consensus       161 A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~--------------------------------  208 (263)
T 3moy_A          161 AMDLCLTGRSLTAEEAERVGLVSRIVPAADLLDEALAVAQRIARMSRP--------------------------------  208 (263)
T ss_dssp             HHHHHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHHSCHH--------------------------------
T ss_pred             HHHHHHcCCCCCHHHHHHCCCccEecCchHHHHHHHHHHHHHHhCCHH--------------------------------
Confidence            999999999999999999999999999999999999999999998864                                


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004972          236 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  292 (721)
Q Consensus       236 ~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  292 (721)
                          |+..+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|.+.
T Consensus       209 ----a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~p~f~  261 (263)
T 3moy_A          209 ----AGRAVKDAINEAFERPLSAGMRYERDAFYAMFDTHDQTEGMTAFLEKRTPEFT  261 (263)
T ss_dssp             ----HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCCC
T ss_pred             ----HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCC
Confidence                33466888999889999999999999999999999999999999999988753

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris}

Probab=100.00  E-value=1.8e-50  Score=418.28  Aligned_cols=252  Identities=24%  Similarity=0.384  Sum_probs=225.1

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcc
Q 004972            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (721)
Q Consensus         1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   79 (721)
                      |+++.|.+++ +++|++||||||+ .|+||.+|+++|.++++++  |+++|+|||||.|+.||+|+|++++..... ...
T Consensus        13 m~~~~v~~~~-~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~--d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-~~~   88 (275)
T 3hin_A           13 ADPSTLVVDT-VGPVLTIGLNRPKKRNALNDGLMAALKDCLTDI--PDQIRAVVIHGIGDHFSAGLDLSELRERDA-TEG   88 (275)
T ss_dssp             CCGGGEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHTSSC--CTTCCEEEEEESSSCSBCCBCGGGCCCCCH-HHH
T ss_pred             CCCCeEEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHh--CcCceEEEEECCCCCccCCCCHHHHhccCh-hhH
Confidence            5678899999 7999999999995 7999999999999999999  579999999999999999999999864211 111


Q ss_pred             cccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHH
Q 004972           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKA  156 (721)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a  156 (721)
                      .......+.++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|+|++|..+|
T Consensus        89 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A  167 (275)
T 3hin_A           89 LVHSQTWHRVF-DKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYYALPEGSRGIFVGGGGSVRLPRLIGVARM  167 (275)
T ss_dssp             HHHHHHHHHHH-HHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhCHHHH
Confidence            12223344556 6799999999999999999999999999999999999999999999999997   8999999999999


Q ss_pred             HHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004972          157 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  236 (721)
Q Consensus       157 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (721)
                      ++|++||++++|+||+++||||+|||++++.+++.++|++|++.+|.+                                
T Consensus       168 ~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia~~~p~a--------------------------------  215 (275)
T 3hin_A          168 ADMMLTGRVYSAAEGVVHGFSQYLIENGSAYDKALELGNRVAQNAPLT--------------------------------  215 (275)
T ss_dssp             HHHHHHCCCEEHHHHHHHTSCSEEESSSCHHHHHHHHHHHHTTSCHHH--------------------------------
T ss_pred             HHHHHcCCCCCHHHHHHCCCCCEEeChhHHHHHHHHHHHHHHhCCHHH--------------------------------
Confidence            999999999999999999999999999999999999999999988642                                


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCC
Q 004972          237 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  293 (721)
Q Consensus       237 ~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~  293 (721)
                          ...+|++++.....+++++++.|...+..++.|+|++|++++|++||+|.+..
T Consensus       216 ----~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~p~f~~  268 (275)
T 3hin_A          216 ----NFAVLQALPMIAEANPQTGLLMESLMATVAQSDQEAKTRIRAFLDHKTAKVRE  268 (275)
T ss_dssp             ----HHHHHTHHHHHHHSCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHC--
T ss_pred             ----HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCC
Confidence                33567888888889999999999999999999999999999999999998754

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A*

Probab=100.00  E-value=4.5e-50  Score=415.97  Aligned_cols=251  Identities=29%  Similarity=0.478  Sum_probs=225.3

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcc
Q 004972            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (721)
Q Consensus         1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   79 (721)
                      |+++.|.+++ +++|++||||||+ .|+||.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++.......  
T Consensus        22 m~~~~v~~~~-~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~--   98 (278)
T 3h81_A           22 MTYETILVER-DQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEMADLTFAD--   98 (278)
T ss_dssp             -CCSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCBCSHHHHTCCHHH--
T ss_pred             CCCCeEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCeecCcCHHHHhccChhh--
Confidence            7788899999 7899999999996 69999999999999999999999999999999999999999999986532111  


Q ss_pred             cccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHH
Q 004972           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKA  156 (721)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a  156 (721)
                      ......... + ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|+|++|..+|
T Consensus        99 ~~~~~~~~~-~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A  176 (278)
T 3h81_A           99 AFTADFFAT-W-GKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKA  176 (278)
T ss_dssp             HHHHTTTGG-G-HHHHTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHH-H-HHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEcCCCEEECchhhcCcCCCccHHHHHHHHhCHHHH
Confidence            001111112 4 5688999999999999999999999999999999999999999999999997   8999999999999


Q ss_pred             HHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004972          157 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  236 (721)
Q Consensus       157 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (721)
                      ++|++||++++|+||+++||||+|||++++++++.++|++|++.+|.                                 
T Consensus       177 ~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~---------------------------------  223 (278)
T 3h81_A          177 MDLILTGRTMDAAEAERSGLVSRVVPADDLLTEARATATTISQMSAS---------------------------------  223 (278)
T ss_dssp             HHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHH---------------------------------
T ss_pred             HHHHHhCCCcCHHHHHHCCCccEEeChhHHHHHHHHHHHHHHhCCHH---------------------------------
Confidence            99999999999999999999999999999999999999999998864                                 


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004972          237 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  292 (721)
Q Consensus       237 ~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  292 (721)
                         |+..+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|.+.
T Consensus       224 ---a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~P~f~  276 (278)
T 3h81_A          224 ---AARMAKEAVNRAFESSLSEGLLYERRLFHSAFATEDQSEGMAAFIEKRAPQFT  276 (278)
T ss_dssp             ---HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCCC
T ss_pred             ---HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCC
Confidence               33466888999889999999999999999999999999999999999988753

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis}

Probab=100.00  E-value=1.1e-49  Score=415.30  Aligned_cols=254  Identities=21%  Similarity=0.309  Sum_probs=225.9

Q ss_pred             CCCCcEEEEEec--CcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCC
Q 004972            1 MAAPRVTMEVGN--DGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG   77 (721)
Q Consensus         1 m~~~~v~~~~~~--~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~   77 (721)
                      |+++ |.++. +  ++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.......
T Consensus        22 m~~~-v~~~~-~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~   99 (286)
T 3myb_A           22 MSEP-LLLQD-RDERGVVTLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASGKAFCAGHDLKEMRAEPSRE   99 (286)
T ss_dssp             --CC-SEEEE-ECTTSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSSCSBCCBCHHHHHSSCCHH
T ss_pred             Ccee-EEEEE-ecCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcChhhhhccccHH
Confidence            6655 88888 6  899999999996 69999999999999999999999999999999999999999999987521111


Q ss_pred             cccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc--ccccccccCHHH
Q 004972           78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG--TQRLPRLVGLSK  155 (721)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~--~~~l~r~~G~~~  155 (721)
                      ....+....++++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+  +++|+|++|..+
T Consensus       100 ~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~~g~~~~L~r~vG~~~  178 (286)
T 3myb_A          100 YYEKLFARCTDVM-LAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRDARFAVSGINVGLFCSTPGVALSRNVGRKA  178 (286)
T ss_dssp             HHHHHHHHHHHHH-HHHHHSSSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCHHHHHHHTTTSCHHH
T ss_pred             HHHHHHHHHHHHH-HHHHcCCCCEEEEECCeehHHHHHHHHhCCEEEEcCCCEEECcccccCCCCchHHHHHHHHcCHHH
Confidence            1122233345556 6799999999999999999999999999999999999999999999999965  899999999999


Q ss_pred             HHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004972          156 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  235 (721)
Q Consensus       156 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (721)
                      |++|++||++++|+||+++||||+|||++++++++.++|+++++.+|.+                               
T Consensus       179 A~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a-------------------------------  227 (286)
T 3myb_A          179 AFEMLVTGEFVSADDAKGLGLVNRVVAPKALDDEIEAMVSKIVAKPRAA-------------------------------  227 (286)
T ss_dssp             HHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHHSCHHH-------------------------------
T ss_pred             HHHHHHcCCCCCHHHHHHCCCCcEecCHHHHHHHHHHHHHHHHhCCHHH-------------------------------
Confidence            9999999999999999999999999999999999999999999987642                               


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCC
Q 004972          236 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  293 (721)
Q Consensus       236 ~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~  293 (721)
                           ...+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|.+.+
T Consensus       228 -----~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~egi~aFlekr~p~f~g  280 (286)
T 3myb_A          228 -----VAMGKALFYRQIETDIESAYADAGTTMACNMMDPSALEGVSAFLEKRRPEWHT  280 (286)
T ss_dssp             -----HHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTSCCCCCC
T ss_pred             -----HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCCCCCC
Confidence                 33567888888889999999999999999999999999999999999988654

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii}

Probab=100.00  E-value=2.1e-49  Score=409.37  Aligned_cols=250  Identities=22%  Similarity=0.345  Sum_probs=214.7

Q ss_pred             CC-CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhh---hccC
Q 004972            1 MA-APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ---KVHG   75 (721)
Q Consensus         1 m~-~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~---~~~~   75 (721)
                      || ++.|.++. +++|++||||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++.   ....
T Consensus         1 Ms~~~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~   79 (266)
T 3fdu_A            1 MSLHPHLNANL-EGGVLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAEHDFTAGNDMKDFMGFVQNPN   79 (266)
T ss_dssp             -CCCTTEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHHHHHHSCC
T ss_pred             CCCCCeEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCeECCcCHHHHhhhccccc
Confidence            65 67899999 7999999999995 79999999999999999999999999999999999999999999987   3222


Q ss_pred             CCcccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccC
Q 004972           76 AGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVG  152 (721)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G  152 (721)
                      ..  .........++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|+|++|
T Consensus        80 ~~--~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG  156 (266)
T 3fdu_A           80 AG--PAGQVPPFVLL-KSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTALFQIPFVSLGLSPEGGASQLLVKQAG  156 (266)
T ss_dssp             CS--CGGGSHHHHHH-HHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEECTTCEEECCTTTTTCCCCTTHHHHHHHHHC
T ss_pred             hh--hHHHHHHHHHH-HHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECchhhhCCCCcchHHHHHHHHhC
Confidence            11  12233445666 6799999999999999999999999999999999999999999999999997   899999999


Q ss_pred             HHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHH
Q 004972          153 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK  232 (721)
Q Consensus       153 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (721)
                      ..+|++|++||++++|+||+++||||+|||  ++++++.++|++|++.+|.++                           
T Consensus       157 ~~~A~~l~ltg~~i~A~eA~~~GLv~~vv~--~l~~~a~~~a~~la~~~~~a~---------------------------  207 (266)
T 3fdu_A          157 YHKAAELLFTAKKFNAETALQAGLVNEIVE--DAYATAQATAQHLTALPLASL---------------------------  207 (266)
T ss_dssp             HHHHHHHHHHCCEECHHHHHHTTSCSEECS--CHHHHHHHHHHHHHTSCHHHH---------------------------
T ss_pred             HHHHHHHHHhCCCcCHHHHHHCCCHHHHHH--HHHHHHHHHHHHHHhCCHHHH---------------------------
Confidence            999999999999999999999999999999  899999999999999887533                           


Q ss_pred             HhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCC
Q 004972          233 KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  293 (721)
Q Consensus       233 ~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~  293 (721)
                               ..+|++++... .+++++++.|.+.+..++.|+|++|++++|++||+|.+.+
T Consensus       208 ---------~~~K~~l~~~~-~~l~~~l~~e~~~~~~~~~s~d~~eg~~aF~ekR~p~~~~  258 (266)
T 3fdu_A          208 ---------KQTKALMKHDL-DQIIECIDHEAEIFMQRVQSPEMLEAVQAFMQKRQPDFSQ  258 (266)
T ss_dssp             ---------HHHHHHHTTTH-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHC---------
T ss_pred             ---------HHHHHHHHhhh-ccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCC
Confidence                     34566666654 4678999999999999999999999999999999998765

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}

Probab=100.00  E-value=3.5e-49  Score=405.42  Aligned_cols=245  Identities=23%  Similarity=0.317  Sum_probs=221.8

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccc
Q 004972            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL   81 (721)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   81 (721)
                      ++.|.++. +++|++||||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++...       .
T Consensus         5 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~-------~   76 (255)
T 3p5m_A            5 MNGISVEH-DGAVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGRAFCSGGDLTGGDTA-------G   76 (255)
T ss_dssp             BTTEEEEE-ETTEEEEEECCGGGTTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCEECC---CHH-------H
T ss_pred             CceEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCCChhhhcch-------H
Confidence            34689999 7999999999996 6999999999999999999999999999999999999999999988621       2


Q ss_pred             cchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHH
Q 004972           82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIE  158 (721)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~  158 (721)
                      +....+.++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|+|++|..+|++
T Consensus        77 ~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~  155 (255)
T 3p5m_A           77 AADAANRVV-RAITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLAFTRVGLMPDGGASALLPLLIGRARTSR  155 (255)
T ss_dssp             HHHHHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECGGGGGTCCCCTTHHHHTHHHHCHHHHHH
T ss_pred             HHHHHHHHH-HHHHhCCCCEEEEeCCeehhhHHHHHHHCCEEEEcCCcEEeCcccccCcCCCccHHHHHHHHhCHHHHHH
Confidence            233445566 6799999999999999999999999999999999999999999999999997   899999999999999


Q ss_pred             HHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCC
Q 004972          159 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM  238 (721)
Q Consensus       159 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (721)
                      |++||++++|+||+++||||+|+|++++++++.++|+++++.+|.+                                  
T Consensus       156 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a----------------------------------  201 (255)
T 3p5m_A          156 MAMTAEKISAATAFEWGMISHITSADEYESVLTDVLRSVSGGPTLA----------------------------------  201 (255)
T ss_dssp             HHHHCCCEEHHHHHHTTSCSEECCTTCHHHHHHHHHHHHHTSCHHH----------------------------------
T ss_pred             HHHcCCCcCHHHHHHCCCCCEeeCHHHHHHHHHHHHHHHHhCCHHH----------------------------------
Confidence            9999999999999999999999999999999999999999988643                                  


Q ss_pred             hhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004972          239 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  292 (721)
Q Consensus       239 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  292 (721)
                        ...+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|.+.
T Consensus       202 --~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~  253 (255)
T 3p5m_A          202 --FGWTKRALAAATLAELEPVQAIEAEGQLALVETADFREGARAFRERRTPNFR  253 (255)
T ss_dssp             --HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCCC
T ss_pred             --HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCC
Confidence              3356788888888899999999999999999999999999999999987753

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=9.2e-50  Score=412.38  Aligned_cols=253  Identities=24%  Similarity=0.330  Sum_probs=223.6

Q ss_pred             CC-CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCc
Q 004972            1 MA-APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD   78 (721)
Q Consensus         1 m~-~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~   78 (721)
                      |+ ++.|.++. +++|++||||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.|+.||+|+|++++........
T Consensus         5 m~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~   83 (265)
T 3swx_A            5 MSDYETLRIRR-DGYVLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGPLFTAGLDLASVAAEIQGGA   83 (265)
T ss_dssp             --CCSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHHHHHC--C
T ss_pred             CCCCceEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcChHHHhhcccchh
Confidence            55 67899999 7999999999995 699999999999999999999999999999999999999999999875432211


Q ss_pred             ccccchHHHHHHHHHH-hhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHH
Q 004972           79 VSLMPDVSVELVVNLI-EDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLS  154 (721)
Q Consensus        79 ~~~~~~~~~~~~~~~l-~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~  154 (721)
                       ..+.....+.+ +.+ .++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|+|++|..
T Consensus        84 -~~~~~~~~~~~-~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~  161 (265)
T 3swx_A           84 -SLTPEGGINPW-QVDGRQLSKPLLVAVHGKVLTLGIELALAADIVIADETATFAQLEVNRGIYPFGGATIRFPRTAGWG  161 (265)
T ss_dssp             -CCCCTTCCCTT-CCSSCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTSCCCSSHHHHHHHHHCHH
T ss_pred             -HHHHHHHHHHH-HHHHHhCCCCEEEEEcCeeehHHHHHHHHCCEEEEcCCCEEECcccccccCCCccHHHHHHHHhhHH
Confidence             11112222334 457 8999999999999999999999999999999999999999999999997   88999999999


Q ss_pred             HHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004972          155 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  234 (721)
Q Consensus       155 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (721)
                      +|++|++||++++|+||+++||||+|+|++++++++.++|+++++.+|.+                              
T Consensus       162 ~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a------------------------------  211 (265)
T 3swx_A          162 NAMRWMLTADTFDAVEAHRIGIVQEIVPVGEHVDTAIAIAQTIARQAPLG------------------------------  211 (265)
T ss_dssp             HHHHHHTTCCCEEHHHHHHTTSCSEEESTTCHHHHHHHHHHHHHHSCHHH------------------------------
T ss_pred             HHHHHHHcCCcCCHHHHHHcCCCCEecChhHHHHHHHHHHHHHHcCCHHH------------------------------
Confidence            99999999999999999999999999999999999999999999988643                              


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004972          235 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  292 (721)
Q Consensus       235 ~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  292 (721)
                            ...+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|++.
T Consensus       212 ------~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~  263 (265)
T 3swx_A          212 ------VQATLRNARLAVREGDAAAEEQLVPTVRELFTSEDATLGVQAFLSRTTAEFV  263 (265)
T ss_dssp             ------HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTCCCCCC
T ss_pred             ------HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCCC
Confidence                  3356778888888899999999999999999999999999999999988753

>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans}

Probab=100.00  E-value=1e-49  Score=411.32  Aligned_cols=253  Identities=20%  Similarity=0.289  Sum_probs=220.0

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCC-cCCCCchhhhh--c-cC
Q 004972            1 MAAPRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF-SGGFDINVFQK--V-HG   75 (721)
Q Consensus         1 m~~~~v~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F-~aG~Dl~~~~~--~-~~   75 (721)
                      ||++.|.++. +++|++|||||| +.|++|.+|+.+|.++++.++.|+++|+|||||.|+.| |+|+|++++..  . ..
T Consensus         1 Ms~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FF~aG~Dl~~~~~~~~~~~   79 (263)
T 3lke_A            1 MSLSYVHTEI-QNDALYITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLLICASDQS   79 (263)
T ss_dssp             --CCSEEEEE-CSSEEEEEECCGGGTTBCCHHHHHHHHHHHHHHHHCSSCCEEEEEESCTTEEECBSCHHHHHHHHHCSS
T ss_pred             CCCcEEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCceEecCcCHHHHHhhcccCC
Confidence            8999999999 899999999999 68999999999999999999999999999999999999 99999999875  2 11


Q ss_pred             CCcccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccC
Q 004972           76 AGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVG  152 (721)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G  152 (721)
                      ......+....++++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|+|++|
T Consensus        80 ~~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vG  158 (263)
T 3lke_A           80 DVRLREVLHVLNHCV-LEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLENFHKMGISPDLGASYFLPRIIG  158 (263)
T ss_dssp             SHHHHHHHHHHHHHH-HHHHTCSSEEEEEECSEEETHHHHGGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEcCCCEEeCchHhhCCCCCccHHHHHHHHhC
Confidence            111222333444556 6799999999999999999999999999999999999999999999999997   899999999


Q ss_pred             HHHHHHHHHcCCCcCHHHHHHcCCccEEcC-CchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHH
Q 004972          153 LSKAIEMMLLSKSITSEEGWKLGLIDAVVT-SEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQA  231 (721)
Q Consensus       153 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~-~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (721)
                      ..+|++|++||++++|+||+++||||+||| ++++.+++.++|+++++.+|.+                           
T Consensus       159 ~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~la~~~~~a---------------------------  211 (263)
T 3lke_A          159 YEQTMNLLLEGKLFTSEEALRLGLIQEICENKQELQERVKNYLKAVSEGYVPA---------------------------  211 (263)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHTSCHHH---------------------------
T ss_pred             HHHHHHHHHhCCCcCHHHHHHcCCCcEecCChhHHHHHHHHHHHHHHhCCHHH---------------------------
Confidence            999999999999999999999999999999 9999999999999999988643                           


Q ss_pred             HHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          232 KKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       232 ~~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                               ...+|++++.....+++++++.|.+.+..++.|+|+++++++|++++++.+
T Consensus       212 ---------~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~e~~~~~~~~~~~~~  262 (263)
T 3lke_A          212 ---------IAATKKLLKGKAAEELKQQLEQETEELVALFKQTEIKKRLEALVEGHHHHH  262 (263)
T ss_dssp             ---------HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHC--------
T ss_pred             ---------HHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhcCHHHHHHHHhhhccCCCCC
Confidence                     335677888887788999999999999999999999999999999998764

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3}

Probab=100.00  E-value=5.4e-49  Score=409.74  Aligned_cols=253  Identities=25%  Similarity=0.362  Sum_probs=227.1

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcc--
Q 004972            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV--   79 (721)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~--   79 (721)
                      ++.|.++. +++|++||||||+ .|++|.+|+++|.++++++++|+++|+|||||.|++||+|+|++++.........  
T Consensus        16 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   94 (279)
T 3g64_A           16 WRHLRVEI-TDGVATVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSGGDVDEIIGATLSMDTAR   94 (279)
T ss_dssp             CSSEEEEE-ETTEEEEEESCGGGTTCBCHHHHHHHHHHHHHHHHTTCCSEEEEEECSSCSBCCBCTTTTHHHHTTCCHHH
T ss_pred             CCeEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceecCcCHHHHhhccccchhhH
Confidence            46799999 7999999999995 7999999999999999999999999999999999999999999998764332211  


Q ss_pred             -cccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcc-cc---ccccccccCHH
Q 004972           80 -SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVI-PG---TQRLPRLVGLS  154 (721)
Q Consensus        80 -~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~-P~---~~~l~r~~G~~  154 (721)
                       ..+....+.++ +.+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++ |+   +++|+|++|..
T Consensus        95 ~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~p~~g~~~~l~r~vG~~  173 (279)
T 3g64_A           95 LLDFNRMTGQVV-RAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPSTRFAFLFTRVGLSGGDMGAAYLLPRVVGLG  173 (279)
T ss_dssp             HHHHHHHHHHHH-HHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCSCCTTHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHH-HHHHhCCCCEEEEEcCeeccccHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchhHHHHHHHHhCHH
Confidence             11222334555 67999999999999999999999999999999999999999999999999 86   89999999999


Q ss_pred             HHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004972          155 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  234 (721)
Q Consensus       155 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (721)
                      +|++|++||++++|+||+++||||+|||++++++++.++|++|++.+|..                              
T Consensus       174 ~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a------------------------------  223 (279)
T 3g64_A          174 HATRLLMLGDTVRAPEAERIGLISELTEEGRADEAARTLARRLADGPALA------------------------------  223 (279)
T ss_dssp             HHHHHHHHCCCEEHHHHHHHTCCSEECCTTCHHHHHHHHHHHHHTSCHHH------------------------------
T ss_pred             HHHHHHHcCCCcCHHHHHHCCCCCEecCchHHHHHHHHHHHHHHhCCHHH------------------------------
Confidence            99999999999999999999999999999999999999999999988643                              


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCC
Q 004972          235 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  293 (721)
Q Consensus       235 ~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~  293 (721)
                            ...+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|++..
T Consensus       224 ------~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~g  276 (279)
T 3g64_A          224 ------HAQTKALLTAELDMPLAAAVELDASTQALLMTGEDYAEFHAAFTEKRPPKWQG  276 (279)
T ss_dssp             ------HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCCCC
T ss_pred             ------HHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCCC
Confidence                  33567888888889999999999999999999999999999999999887643

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum}

Probab=100.00  E-value=1.4e-49  Score=409.22  Aligned_cols=248  Identities=25%  Similarity=0.297  Sum_probs=186.2

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccc
Q 004972            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL   81 (721)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   81 (721)
                      +..|.++. +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++...........
T Consensus         5 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   83 (256)
T 3qmj_A            5 MVTLQIDD-DNRVRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSGRGFSAGTDLAEMQARITDPNFSE   83 (256)
T ss_dssp             -CCEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBCHHHHHHHHHSSSCCC
T ss_pred             cceEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhcccchhHHH
Confidence            45688999 7999999999996 699999999999999999999999999999999999999999999865432222233


Q ss_pred             cchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHH
Q 004972           82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIE  158 (721)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~  158 (721)
                      .....+.++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|+|++|..+|++
T Consensus        84 ~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~  162 (256)
T 3qmj_A           84 GKFGFRGLI-KALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTARLKCPFTSLGVAPEAASSYLLPQLVGRQNAAW  162 (256)
T ss_dssp             CSSHHHHHH-HHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEEETTCEEECCGGGC---CCTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-HHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEeCCCEEECcccccCCCCCccHHHHHHHHhCHHHHHH
Confidence            344556666 6799999999999999999999999999999999999999999999999997   899999999999999


Q ss_pred             HHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCC
Q 004972          159 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM  238 (721)
Q Consensus       159 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (721)
                      |++||++++|+||+++||||+|+|++++.+++.++|+++++.+|.+                                  
T Consensus       163 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a----------------------------------  208 (256)
T 3qmj_A          163 LLMSSEWIDAEEALRMGLVWRICSPEELLPEARRHAEILAAKPISS----------------------------------  208 (256)
T ss_dssp             HHHSCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHH----------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCccEEeCHhHHHHHHHHHHHHHHhCCHHH----------------------------------
Confidence            9999999999999999999999999999999999999999987643                                  


Q ss_pred             hhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhh
Q 004972          239 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA  288 (721)
Q Consensus       239 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~  288 (721)
                        ...+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+
T Consensus       209 --~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~  256 (256)
T 3qmj_A          209 --LMAVKHTMVEPNRAQIAAASARENAHFAELMGAQANAAALADFTDRRR  256 (256)
T ss_dssp             --HHHHHHHHHCC-------------------------------------
T ss_pred             --HHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHccCC
Confidence              345678888888888999999999999999999999999999999985

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus}

Probab=100.00  E-value=7.4e-49  Score=410.08  Aligned_cols=252  Identities=24%  Similarity=0.339  Sum_probs=219.6

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCc----
Q 004972            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD----   78 (721)
Q Consensus         4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~----   78 (721)
                      ..|.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.|+.||+|+|++++........    
T Consensus        24 ~~v~~~~-~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~  102 (290)
T 3sll_A           24 FVLVDRP-RPEIALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKGFCSGADQKSAGPIPHIGGLTQP  102 (290)
T ss_dssp             CEEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCC------CCCSSCTTCCHH
T ss_pred             eEEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHcCCCeeEEEEECCCCCeeCCcChHHHhcccccccccch
Confidence            4578888 7999999999995 799999999999999999999999999999999999999999999865432211    


Q ss_pred             --ccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc----ccccccccC
Q 004972           79 --VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG----TQRLPRLVG  152 (721)
Q Consensus        79 --~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~----~~~l~r~~G  152 (721)
                        ...+....+.++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+    +++|+|++|
T Consensus       103 ~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~L~r~vG  181 (290)
T 3sll_A          103 TIALRSMELLDEVI-LTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQDAYFRAAGINNGLTASELGLSYLLPRAIG  181 (290)
T ss_dssp             HHHHHHHHHHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTTTTTTSCSCCTTHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHH-HHHHhCCCCEEEEECCeehHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCcccHHHHHHHHhC
Confidence              111223344555 6789999999999999999999999999999999999999999999999984    789999999


Q ss_pred             HHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHH
Q 004972          153 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK  232 (721)
Q Consensus       153 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (721)
                      ..+|++|++||++++|+||+++||||+|||++++++++.++|++|++.+|.+                            
T Consensus       182 ~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a----------------------------  233 (290)
T 3sll_A          182 TSRASDIMLTGRDVDADEAERIGLVSRKVASESLLEECYAIGERIAGFSRPG----------------------------  233 (290)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHHSCHHH----------------------------
T ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCccEEeChhHHHHHHHHHHHHHHcCCHHH----------------------------
Confidence            9999999999999999999999999999999999999999999999988643                            


Q ss_pred             HhCCCChhHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHhhhhcCCC
Q 004972          233 KTAPNMPQHQACLDVIEEGIV-HGGYSGVLKEAKVFKELV-MLDTSRGLVHVFFAQRATSKVP  293 (721)
Q Consensus       233 ~~~~~~~A~~~~~~~i~~~~~-~~~~~~l~~E~~~~~~~~-~s~~~~~~i~aF~~~r~~~~~~  293 (721)
                              ...+|++++.... .+++++++.|...+..++ .|+|++|++++|++||+|.+.+
T Consensus       234 --------~~~~K~~l~~~~~~~~l~~~l~~e~~~~~~~~~~s~d~~eg~~AFlekR~P~f~g  288 (290)
T 3sll_A          234 --------IELTKRTIWSGLDAASLESHMHQEGLGQLYVRLLTDNFEEATAARKEKRPAEFRD  288 (290)
T ss_dssp             --------HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTTSCCCCCS
T ss_pred             --------HHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCCC
Confidence                    3356788888888 899999999999999999 9999999999999999887643

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B*

Probab=100.00  E-value=2.9e-49  Score=409.78  Aligned_cols=254  Identities=24%  Similarity=0.334  Sum_probs=225.2

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccC---C
Q 004972            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG---A   76 (721)
Q Consensus         1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~---~   76 (721)
                      |+ +.+.++. +++|++||||||+ .|++|.+|+++|.+++++++.|+++++|||||.|++||+|+|++++.....   .
T Consensus         1 m~-~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   78 (269)
T 1nzy_A            1 MY-EAIGHRV-EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGV   78 (269)
T ss_dssp             CC-SSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHH
T ss_pred             CC-ceEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCcccCcCHHHHhhcccccCh
Confidence            66 5688998 7899999999995 799999999999999999999999999999999999999999998754210   0


Q ss_pred             Ccc-cccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccC
Q 004972           77 GDV-SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVG  152 (721)
Q Consensus        77 ~~~-~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G  152 (721)
                      ... ..+....++++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|+|++|
T Consensus        79 ~~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG  157 (269)
T 1nzy_A           79 RDHFRIAALWWHQMI-HKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVG  157 (269)
T ss_dssp             HHHHHHHHHHHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEeCcccccCCCCCccHHHHHHHHhh
Confidence            000 11222244555 6689999999999999999999999999999999999999999999999997   789999999


Q ss_pred             HHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHH
Q 004972          153 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK  232 (721)
Q Consensus       153 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (721)
                      ..+|++|++||++++|+||+++||||+|+|++++.+++.++++++++.+|..                            
T Consensus       158 ~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a----------------------------  209 (269)
T 1nzy_A          158 MRRAMELMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAWKVARELAAAPTHL----------------------------  209 (269)
T ss_dssp             HHHHHHHHHHCCCBCHHHHHHHTSCSCEECHHHHHHHHHHHHHHHHHSCHHH----------------------------
T ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHcCCHHH----------------------------
Confidence            9999999999999999999999999999999999999999999999987642                            


Q ss_pred             HhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCC
Q 004972          233 KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  293 (721)
Q Consensus       233 ~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~  293 (721)
                              ...+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|++.+
T Consensus       210 --------~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~f~~  262 (269)
T 1nzy_A          210 --------QVMAKERFHAGWMQPVEECTEFEIQNVIASVTHPHFMPCLTRFLDGHRADRPQ  262 (269)
T ss_dssp             --------HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHSTTHHHHHHHHHTTCCTTCCS
T ss_pred             --------HHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCC
Confidence                    23567788888888999999999999999999999999999999999888654

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus}

Probab=100.00  E-value=9.5e-49  Score=404.78  Aligned_cols=250  Identities=26%  Similarity=0.367  Sum_probs=217.0

Q ss_pred             CC-CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCc
Q 004972            1 MA-APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD   78 (721)
Q Consensus         1 m~-~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~   78 (721)
                      |+ +++|.++. +++|++||||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++ ...  ... 
T Consensus         5 m~~~~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~-~~~--~~~-   79 (265)
T 3rsi_A            5 MSAARELLVER-DGPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAGSAYCVGGDLS-DGW--MVR-   79 (265)
T ss_dssp             ----CCEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSEECC-------------
T ss_pred             CCCCCcEEEEE-ECCEEEEEEcCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCCC-ccc--ccc-
Confidence            55 57899999 7999999999995 79999999999999999999999999999999999999999998 321  111 


Q ss_pred             ccccchHHHH-HHHHHH-h--hCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---cccccccc
Q 004972           79 VSLMPDVSVE-LVVNLI-E--DCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLV  151 (721)
Q Consensus        79 ~~~~~~~~~~-~~~~~l-~--~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~  151 (721)
                      ...+...... ++ +.+ .  ++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|+|++
T Consensus        80 ~~~~~~~~~~~~~-~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~v  158 (265)
T 3rsi_A           80 DGSAPPLDPATIG-KGLLLSHTLTKPLIAAVNGACLGGGCEMLQQTDIRVSDEHATFGLPEVQRGLVPGAGSMVRLKRQI  158 (265)
T ss_dssp             -----CCCHHHHH-HHTTSSCCCSSCEEEEECSCEETHHHHHHTTCSEEEEETTCEEECGGGGGTCCCTTTHHHHHHHHS
T ss_pred             hHHHHHHhHHHHH-HHHHHhcCCCCCEEEEECCeeeHHHHHHHHHCCEEEecCCCEEECchhccCCCCCccHHHHHHHHh
Confidence            1122222334 55 667 8  999999999999999999999999999999999999999999999997   89999999


Q ss_pred             CHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHH
Q 004972          152 GLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQA  231 (721)
Q Consensus       152 G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (721)
                      |..+|++|++||++++|+||+++||||+|||++++.+++.++|++|++.+|.+                           
T Consensus       159 G~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a---------------------------  211 (265)
T 3rsi_A          159 PYTKAMEMILTGEPLTAFEAYHFGLVGHVVPAGTALDKARSLADRIVRNGPLA---------------------------  211 (265)
T ss_dssp             CHHHHHHHHHHCCCEEHHHHHHTTSCSEEESTTCHHHHHHHHHHHHHTSCHHH---------------------------
T ss_pred             CHHHHHHHHHcCCCCCHHHHHHCCCccEecChhHHHHHHHHHHHHHHhCCHHH---------------------------
Confidence            99999999999999999999999999999999999999999999999988643                           


Q ss_pred             HHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004972          232 KKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  292 (721)
Q Consensus       232 ~~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  292 (721)
                               ...+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|.+.
T Consensus       212 ---------~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~  263 (265)
T 3rsi_A          212 ---------VRNAKEAIVRSGWLAEEDARAIEARLTRPVITSADAREGLAAFKEKREARFT  263 (265)
T ss_dssp             ---------HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHTSCCCCC
T ss_pred             ---------HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCC
Confidence                     3456788888888899999999999999999999999999999999987753

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus}

Probab=100.00  E-value=1.3e-48  Score=404.12  Aligned_cols=249  Identities=25%  Similarity=0.375  Sum_probs=223.8

Q ss_pred             CCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEe-CCCCCcCCCCchhhhhccCCCcccc
Q 004972            3 APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTG-NGGRFSGGFDINVFQKVHGAGDVSL   81 (721)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg-~g~~F~aG~Dl~~~~~~~~~~~~~~   81 (721)
                      ++.+.++. +++|++||||||+.|++|.+|+++|.+++++++.|+++++||||| .|++||+|+|++++.. . ......
T Consensus         8 ~~~i~~~~-~~~v~~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~-~-~~~~~~   84 (265)
T 2ppy_A            8 KQYLTVFK-EDGIAEIHLHINKSNSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAGADINFLRS-A-DPRFKT   84 (265)
T ss_dssp             CSSEEEEE-ETTEEEEEECSSTTCCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSTTEEECCBCHHHHTT-S-CHHHHH
T ss_pred             CCeEEEEe-eCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCeeeeCcCHHHHhc-c-chhHHH
Confidence            45788998 789999999999779999999999999999999999999999999 9999999999999864 1 111112


Q ss_pred             cchHH-HHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCc-eEeCcccccCcccc---ccccccccCHHHH
Q 004972           82 MPDVS-VELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKT-QLGLPELTLGVIPG---TQRLPRLVGLSKA  156 (721)
Q Consensus        82 ~~~~~-~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a-~~~~pe~~~Gl~P~---~~~l~r~~G~~~a  156 (721)
                      +...+ ++++ ..+.++||||||+|||+|+|||++|+++||+||+++++ +|++||+++|++|+   +++|+|++|..+|
T Consensus        85 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~ag~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a  163 (265)
T 2ppy_A           85 QFCLFCNETL-DKIARSPQVYIACLEGHTVGGGLEMALACDLRFMGDEAGKIGLPEVSLGVLAGTGGTQRLARLIGYSRA  163 (265)
T ss_dssp             HHHHHHHHHH-HHHHHSSSEEEEEECSEEETHHHHHHHTSSEEEEETTCCCEECCGGGGTCCCTTTHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHH-HHHHcCCCCEEEEECCEEeeHHHHHHHhCCEEEEeCCCCEEECcccccCCCCCchHHHHHHHHhCHHHH
Confidence            22233 4556 67999999999999999999999999999999999999 99999999999997   8999999999999


Q ss_pred             HHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004972          157 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  236 (721)
Q Consensus       157 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (721)
                      ++|++||++++|+||+++||||+|+|++++++++.++++++++.+|.                                 
T Consensus       164 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~---------------------------------  210 (265)
T 2ppy_A          164 LDMNITGETITPQEALEIGLVNRVFPQAETRERTREYARKLANSATY---------------------------------  210 (265)
T ss_dssp             HHHHHHCCCBCHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHH---------------------------------
T ss_pred             HHHHHhCCccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHhCCHH---------------------------------
Confidence            99999999999999999999999999999999999999999998764                                 


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          237 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       237 ~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                         ++..+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|.+
T Consensus       211 ---a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~~  262 (265)
T 2ppy_A          211 ---AVSNIKLAIMNGKEMPLNVAIRYEGELQNLLFRSEDAKEGLSAFLEKRQPNW  262 (265)
T ss_dssp             ---HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCC
T ss_pred             ---HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence               2335678888888889999999999999999999999999999999988775

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0

Probab=100.00  E-value=1.6e-49  Score=410.31  Aligned_cols=251  Identities=24%  Similarity=0.340  Sum_probs=223.7

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccc
Q 004972            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL   81 (721)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   81 (721)
                      ++.|.++. +++|++||||||+ .|++|.+|+++|.++++.+++|+++++|||||.|++||+|+|++++...........
T Consensus         6 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   84 (265)
T 3qxz_A            6 VTELHEEI-RDGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAFCSGAQISAAAETFAAPRNPD   84 (265)
T ss_dssp             CCEEEEEE-ETTEEEEEEECGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBCSTTCTTCCCCCCSSC
T ss_pred             cceEEEEE-ECCEEEEEEcCCccCCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCccccCcChHHHhhccchhHHHH
Confidence            36788999 7999999999995 699999999999999999999999999999999999999999999865432221111


Q ss_pred             cchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHH
Q 004972           82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIE  158 (721)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~  158 (721)
                      + .. +.++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|+|++|..+|++
T Consensus        85 ~-~~-~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~  161 (265)
T 3qxz_A           85 F-SA-SPVQ-PAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAEEGRYAIPQVRFGVAPDALAHWTLPRLVGTAVAAE  161 (265)
T ss_dssp             C-CS-CCSS-SCGGGSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCCEECCGGGGTSCCCTTHHHHTHHHHHHHHHHH
T ss_pred             H-HH-HHHH-HHHHhCCCCEEEEECCEEehHhHHHHHHCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHH
Confidence            1 12 3444 5588999999999999999999999999999999999999999999999997   889999999999999


Q ss_pred             HHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhc-CchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCC
Q 004972          159 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR-RKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN  237 (721)
Q Consensus       159 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (721)
                      |++||++++|+||+++||||+|||++++++++.++|+++++. +|..                                 
T Consensus       162 l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~p~a---------------------------------  208 (265)
T 3qxz_A          162 LLLTGASFSAQRAVETGLANRCLPAGKVLGAALRMAHDIATNVAPES---------------------------------  208 (265)
T ss_dssp             HHHHCCCBCHHHHHHHTSCSEEECHHHHHHHHHHHHHHHHHHSCHHH---------------------------------
T ss_pred             HHHcCCCcCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHccCCHHH---------------------------------
Confidence            999999999999999999999999999999999999999998 7643                                 


Q ss_pred             ChhHHHHHHHHHHhhcCCHHHH--HHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCC
Q 004972          238 MPQHQACLDVIEEGIVHGGYSG--VLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  293 (721)
Q Consensus       238 ~~A~~~~~~~i~~~~~~~~~~~--l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~  293 (721)
                         ...+|++++.....+++++  ++.|.+.+..++.|+|++|++++|++||+|.+.+
T Consensus       209 ---~~~~K~~l~~~~~~~l~~~~~l~~e~~~~~~~~~s~d~~egi~Af~ekr~P~f~g  263 (265)
T 3qxz_A          209 ---AALTKRLLWDAQMTGMSAAEVAARETADHLRLMGSQDAAEGPRAFIDGRPPRWAG  263 (265)
T ss_dssp             ---HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSTHHHHHHHHHHHTSCCCCCC
T ss_pred             ---HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHcCCCCCCCC
Confidence               3356778888877788888  9999999999999999999999999999987643

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0

Probab=100.00  E-value=5e-49  Score=409.16  Aligned_cols=251  Identities=22%  Similarity=0.305  Sum_probs=217.9

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccC-----C-
Q 004972            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG-----A-   76 (721)
Q Consensus         4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~-----~-   76 (721)
                      +.|.++. +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.....     . 
T Consensus        11 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   89 (274)
T 3tlf_A           11 DTIKYEV-DGHTATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTGRAFCSGADVKEIPEDGKVIYERPY   89 (274)
T ss_dssp             SSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBC--------------CT
T ss_pred             CceEEEE-ECCEEEEEECCccccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEeCCCCCcccCcCHHHHhhccccccccch
Confidence            4799999 7999999999996 799999999999999999999999999999999999999999999865332     0 


Q ss_pred             CcccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc--ccccccccCHH
Q 004972           77 GDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG--TQRLPRLVGLS  154 (721)
Q Consensus        77 ~~~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~--~~~l~r~~G~~  154 (721)
                      ..........+.++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+  +++|+|++|..
T Consensus        90 ~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~g~~~~L~r~vG~~  168 (274)
T 3tlf_A           90 LSTYDQWEAPQEGT-PPFRTMAKPVLTAVNGICCGAGMDWVTTTDIVIASEQATFFDPHVSIGLVAGRELVRVSRVLPRS  168 (274)
T ss_dssp             TCSGGGGSCCCTTC-CCTTSCCSCEEEEECSEEEGGGHHHHHHSSEEEEETTCEEECCGGGGTCCCCHHHHHHTTTSCHH
T ss_pred             hhHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCcccchHHHHHHHHhCHH
Confidence            00111111222344 5588999999999999999999999999999999999999999999999996  89999999999


Q ss_pred             HHHHHHHcCC--CcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHH
Q 004972          155 KAIEMMLLSK--SITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK  232 (721)
Q Consensus       155 ~a~~l~ltg~--~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (721)
                      +|++|++||+  +++|+||+++||||+|+|++++++++.++|++|++.+|.                             
T Consensus       169 ~A~~l~ltg~~~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~-----------------------------  219 (274)
T 3tlf_A          169 IALRMALMGKHERMSAQRAYELGLISEIVEHDRLLERAHEIADIVNSNAPL-----------------------------  219 (274)
T ss_dssp             HHHHHHHHGGGCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHH-----------------------------
T ss_pred             HHHHHHHcCCCCccCHHHHHHCCCCCeecCHHHHHHHHHHHHHHHHhCCHH-----------------------------
Confidence            9999999999  999999999999999999999999999999999998864                             


Q ss_pred             HhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004972          233 KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  292 (721)
Q Consensus       233 ~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  292 (721)
                             |...+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|.+.
T Consensus       220 -------a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~  272 (274)
T 3tlf_A          220 -------AVRGTRLAILKGLNVPLHEAEILAETFRERVLRTEDAAEGPRAFVEKRQPNWQ  272 (274)
T ss_dssp             -------HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred             -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCC
Confidence                   33456788999888999999999999999999999999999999999987753

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}

Probab=100.00  E-value=1e-48  Score=403.02  Aligned_cols=247  Identities=26%  Similarity=0.363  Sum_probs=218.2

Q ss_pred             CcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCccccc
Q 004972            4 PRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM   82 (721)
Q Consensus         4 ~~v~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (721)
                      +.+.++. +++|++|||||| +.|++|.+|+++|.+++++++.|+++++|||||.|++||+|+|++++......   ..+
T Consensus         3 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~---~~~   78 (257)
T 2ej5_A            3 ETIRYEV-KGQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGVTEEMDH---GDV   78 (257)
T ss_dssp             SSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCC-------CH---HHH
T ss_pred             CceEEEe-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCcCHHHHhhccch---hHH
Confidence            6789998 789999999999 58999999999999999999999999999999999999999999988542211   111


Q ss_pred             ch-HHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHH
Q 004972           83 PD-VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIE  158 (721)
Q Consensus        83 ~~-~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~  158 (721)
                      .. ..++++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|+|++|..+|++
T Consensus        79 ~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~  157 (257)
T 2ej5_A           79 LRSRYAPMM-KALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAPAFIHVGLVPDAGHLYYLPRLVGRAKALE  157 (257)
T ss_dssp             HHHTHHHHH-HHHHHCCSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHH-HHHHhCCCCEEEEECccccchhHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHhCHHHHHH
Confidence            11 134555 6689999999999999999999999999999999999999999999999997   889999999999999


Q ss_pred             HHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCC
Q 004972          159 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM  238 (721)
Q Consensus       159 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (721)
                      |++||++++|+||+++||||+|+|++++++++.++++++++.+|..                                  
T Consensus       158 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a----------------------------------  203 (257)
T 2ej5_A          158 LAVLGEKVTAEEAAALGLATKVIPLSDWEEEVKQFAERLSAMPTKA----------------------------------  203 (257)
T ss_dssp             HHHHCCCEEHHHHHHHTCCSEEECGGGHHHHHHHHHHHHHTSCHHH----------------------------------
T ss_pred             HHHhCCccCHHHHHHcCCcceecChhHHHHHHHHHHHHHHhCCHHH----------------------------------
Confidence            9999999999999999999999999999999999999999987642                                  


Q ss_pred             hhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          239 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       239 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                        ...+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|.+
T Consensus       204 --~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~  254 (257)
T 2ej5_A          204 --IGLIKRLLRESEETTFDRYLEREAECQRIAGLTSDHREGVKAFFEKRKPLF  254 (257)
T ss_dssp             --HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTTCCCCC
T ss_pred             --HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCChHHHHHHHHHhcCCCCCC
Confidence              235677888888889999999999999999999999999999999988765

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A

Probab=100.00  E-value=1.2e-48  Score=402.66  Aligned_cols=250  Identities=30%  Similarity=0.447  Sum_probs=221.9

Q ss_pred             CC-CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCc
Q 004972            1 MA-APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD   78 (721)
Q Consensus         1 m~-~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~   78 (721)
                      |+ +..+.++. +++|++||||||+ .|++|.+|+++|.+++++++.|+++++|||||.|++||+|+|++++......  
T Consensus         1 m~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~--   77 (258)
T 2pbp_A            1 MSEFVSIAARQ-EGAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGADIQEMAKDDPI--   77 (258)
T ss_dssp             ---CCSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCCCHHHHHTCCHH--
T ss_pred             CCCcceEEEEe-eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccch--
Confidence            65 45788888 7899999999995 7999999999999999999999999999999999999999999988642110  


Q ss_pred             ccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHH
Q 004972           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSK  155 (721)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~  155 (721)
                      ...+...+ +.+ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|+|++|..+
T Consensus        78 ~~~~~~~~-~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~  155 (258)
T 2pbp_A           78 RLEWLNQF-ADW-DRLSIVKTPMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKR  155 (258)
T ss_dssp             HHHHHCTT-HHH-HHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHH
T ss_pred             hHHHHHHH-HHH-HHHHhCCCCEEEEEcCEEEhHHHHHHHhCCEEEEcCCCEEECcccccCCCCcccHHHHHHHHhCHHH
Confidence            01111112 445 5688999999999999999999999999999999999999999999999997   899999999999


Q ss_pred             HHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004972          156 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  235 (721)
Q Consensus       156 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (721)
                      |++|++||++++|+||+++||||+|+|++++++++.++++++++.+|.+                               
T Consensus       156 a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a-------------------------------  204 (258)
T 2pbp_A          156 ALEWLWTGARMSAKEAEQLGIVNRVVSPELLMEETMRLAGRLAEQPPLA-------------------------------  204 (258)
T ss_dssp             HHHHHHHCCCEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSCHHH-------------------------------
T ss_pred             HHHHHHcCCccCHHHHHHcCCcceeeChHHHHHHHHHHHHHHHhCCHHH-------------------------------
Confidence            9999999999999999999999999999999999999999999987642                               


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          236 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       236 ~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                           ...+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|++
T Consensus       205 -----~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~  255 (258)
T 2pbp_A          205 -----LRLIKEAVQKAVDYPLYEGMQFERKNFYLLFASEDQKEGMAAFLEKRKPRF  255 (258)
T ss_dssp             -----HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCC
T ss_pred             -----HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCCCC
Confidence                 335678888888889999999999999999999999999999999998764

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis}

Probab=100.00  E-value=1.1e-48  Score=403.69  Aligned_cols=251  Identities=18%  Similarity=0.178  Sum_probs=215.7

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccC-CCc
Q 004972            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG-AGD   78 (721)
Q Consensus         1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~-~~~   78 (721)
                      |+++.|.++. +++|++||||||+ .|++|.+|+.+|.+++++++.| ++|+|||||.|++||+|+|++++..... ...
T Consensus         4 m~~~~i~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   81 (267)
T 3hp0_A            4 VTYQTIKVRF-QASVCYITFHRPEANNTINDTLIEECLQVLNQCETS-TVTVVVLEGLPEVFCFGADFQEIYQEMKRGRK   81 (267)
T ss_dssp             -CCSSEEEEE-ETTEEEEEECCGGGTTCBCSHHHHHHHHHHHHHHHS-SCCEEEEECCSSCSBCCBCHHHHHHTTTTTCC
T ss_pred             CCCceEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhcC-CCEEEEEECCCCceecCcCHHHHHhcccChHH
Confidence            6778899999 7999999999996 6999999999999999999986 6999999999999999999999876421 112


Q ss_pred             ccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc--ccccccccCHHHH
Q 004972           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG--TQRLPRLVGLSKA  156 (721)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~--~~~l~r~~G~~~a  156 (721)
                      ..........++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+  +++|+|++|..+|
T Consensus        82 ~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~l~r~vG~~~A  160 (267)
T 3hp0_A           82 QASSQEPLYDLW-MKLQTGPYVTISHVRGKVNAGGLGFVSATDIAIADQTASFSLSELLFGLYPACVLPFLIRRIGRQKA  160 (267)
T ss_dssp             SCCCCHHHHHHH-HHHHHSSSEEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTTHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHH-HHHHcCCCCEEEEECCEEeehHHHHHHhCCEEEEcCCCEEECchhccCcCchhHHHHHHHHhCHHHH
Confidence            233444555666 6799999999999999999999999999999999999999999999999998  7899999999999


Q ss_pred             HHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004972          157 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  236 (721)
Q Consensus       157 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (721)
                      ++|++||++++|+||+++||||+|+|+.+  ..+.++++++++.+|.+                                
T Consensus       161 ~ellltg~~i~A~eA~~~GLV~~vv~~~~--~~~~~~a~~la~~~p~a--------------------------------  206 (267)
T 3hp0_A          161 HYMTLMTKPISVQEASEWGLIDAFDAESD--VLLRKHLLRLRRLNKKG--------------------------------  206 (267)
T ss_dssp             HHHHHHCCCBCHHHHHHHTSSSCBCSCTT--HHHHHHHHHHTTSCHHH--------------------------------
T ss_pred             HHHHHcCCCCCHHHHHHCCCcceecCCHH--HHHHHHHHHHHhCCHHH--------------------------------
Confidence            99999999999999999999999998654  34678999999987643                                


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCC
Q 004972          237 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  293 (721)
Q Consensus       237 ~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~  293 (721)
                          ...+|++++... ....++++.|.+.+..++.|+|++|++++|++||+|++.+
T Consensus       207 ----~~~~K~~l~~~~-~~~~~~~~~e~~~~~~~~~s~d~~Eg~~AF~ekr~P~~~~  258 (267)
T 3hp0_A          207 ----IAHYKQFMSSLD-HQVSRAKATALTANQDMFSDPQNQMGIIRYVETGQFPWED  258 (267)
T ss_dssp             ----HHHHHHHHHHHC-CHHHHHHHHHHHHHHHHTTSTTHHHHHHHHTTSCCC----
T ss_pred             ----HHHHHHHHHhcc-cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCC
Confidence                234566776653 3467888899999999999999999999999999999765

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis}

Probab=100.00  E-value=6e-49  Score=409.45  Aligned_cols=245  Identities=25%  Similarity=0.329  Sum_probs=217.0

Q ss_pred             CCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcCCCCchhhhhccC----CC
Q 004972            3 APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHG----AG   77 (721)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~----~~   77 (721)
                      ++.|.+++ +++|++||||||+.|+||.+|+.+|.+++++++.|+++|+|||||.| ++||+|+|++++.....    ..
T Consensus         8 ~~~i~~~~-~~~va~itlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~   86 (287)
T 3gkb_A            8 YSTLRVSS-EHGVARIILDNPPVNVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIGEKMDALQELAA   86 (287)
T ss_dssp             CSSEEEEE-ETTEEEEEECCTTTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCTTGGGSHHHHHHHHH
T ss_pred             CCeEEEEE-ECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHcCCCeeEEEEecCCCCceeCCcCHHHHhhccccchhhH
Confidence            67899999 79999999999999999999999999999999999999999999998 78999999998863210    00


Q ss_pred             cccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeC-CceEeCcccccCcccc---ccccccccCH
Q 004972           78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAP-KTQLGLPELTLGVIPG---TQRLPRLVGL  153 (721)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~-~a~~~~pe~~~Gl~P~---~~~l~r~~G~  153 (721)
                      .........+.++ ..+.++||||||+|||+|+|||++|+++||+|||++ +++|++||+++|++|+   +++|+|++|.
T Consensus        87 ~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~  165 (287)
T 3gkb_A           87 SAPADVNVFQAVG-ELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAAAETAGLGQIEALMGIIPGGGGTQYLRGRVGR  165 (287)
T ss_dssp             TSCTTCCTTHHHH-HHHHHCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECGGGGGTSCCCSSHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCCchHHHHHHHHhCH
Confidence            1112223344666 679999999999999999999999999999999999 9999999999999997   8999999999


Q ss_pred             HHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHH
Q 004972          154 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK  233 (721)
Q Consensus       154 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (721)
                      .+|++|++||++++|+||+++||||+|||++++++++.++|++|++.+|.++                            
T Consensus       166 ~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~p~a~----------------------------  217 (287)
T 3gkb_A          166 NRALEVVLTADLFDAETAASYGWINRALPADELDEYVDRVARNIAALPDGVI----------------------------  217 (287)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTSSSEEECHHHHHHHHHHHHHHHHTSCTTHH----------------------------
T ss_pred             HHHHHHHHcCCCCCHHHHHHCCCCcEEeChhHHHHHHHHHHHHHHcCCHHHH----------------------------
Confidence            9999999999999999999999999999999999999999999999887533                            


Q ss_pred             hCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhh
Q 004972          234 TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA  288 (721)
Q Consensus       234 ~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~  288 (721)
                              ..+|++++..   ...++++.|.+.+..++.|+|++|++++|++||+
T Consensus       218 --------~~~K~~l~~~---~~~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekr~  261 (287)
T 3gkb_A          218 --------EAAKRSLPAD---DLKEGLLGENDAWAATFSLPAAQQLISGGLKDGA  261 (287)
T ss_dssp             --------HHHHHHSCCC---CCHHHHHHHHHHHHHHHTSHHHHHHHHHHHHTTT
T ss_pred             --------HHHHHHHHcc---CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Confidence                    2445666553   3468999999999999999999999999999987

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A*

Probab=100.00  E-value=1.6e-48  Score=402.52  Aligned_cols=250  Identities=21%  Similarity=0.264  Sum_probs=223.1

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEe-CC-CCCcCCCCchhhhhccCCC
Q 004972            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTG-NG-GRFSGGFDINVFQKVHGAG   77 (721)
Q Consensus         1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg-~g-~~F~aG~Dl~~~~~~~~~~   77 (721)
                      |+++.+.++. +++|++||||||+ .|++|.+|+++|.+++++++.|+ +++||||| .| +.||+|+|++++.......
T Consensus         1 m~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~-vr~vVltg~~g~~~F~aG~Dl~~~~~~~~~~   78 (261)
T 1ef8_A            1 MSYQYVNVVT-INKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPE-IRCIILRAPSGSKVFSAGHDIHELPSGGRDP   78 (261)
T ss_dssp             CCCSSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHTCSTT-CCEEEEECCTTCSEEECCSCSTTC-----CT
T ss_pred             CCcceEEEEE-eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCC-ceEEEEECCCCCCeeecCcChHhhhccCchh
Confidence            8899999999 7899999999995 79999999999999999999999 99999999 98 9999999999886432111


Q ss_pred             cccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHH
Q 004972           78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLS  154 (721)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~  154 (721)
                       . ......++++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|+|++|..
T Consensus        79 -~-~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~  155 (261)
T 1ef8_A           79 -L-SYDDPLRQIT-RMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFH  155 (261)
T ss_dssp             -T-CTTSHHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCHH
T ss_pred             -H-HHHHHHHHHH-HHHHhCCCCEEEEECCEEEeHhHHHHHhCCEEEecCCCEEeCchhccCCCCCccHHHHHHHHhCHH
Confidence             1 1222345666 6689999999999999999999999999999999999999999999999997   89999999999


Q ss_pred             HHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004972          155 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  234 (721)
Q Consensus       155 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (721)
                      +|++|++||++++|+||+++||||+|+|++++++++.++++++++.+|..                              
T Consensus       156 ~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a------------------------------  205 (261)
T 1ef8_A          156 IVKELIFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLA------------------------------  205 (261)
T ss_dssp             HHHHHHHHCCCEEHHHHHHTTSCSEEECHHHHHHHHHHHHHHHTTSCHHH------------------------------
T ss_pred             HHHHHHHcCCccCHHHHHHCCCcccccCHHHHHHHHHHHHHHHHhCCHHH------------------------------
Confidence            99999999999999999999999999999999999999999999987642                              


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHH--HHhCCHHHHHHHHHHHHhhhhcC
Q 004972          235 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFK--ELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       235 ~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~--~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                            ...+|++++.+...+++++++.|.+.+.  .++.|+|+++++++|++||+|.+
T Consensus       206 ------~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~s~d~~eg~~af~ekr~p~~  258 (261)
T 1ef8_A          206 ------IAVIKEELRVLGEAHTMNSDEFERIQGMRRAVYDSEDYQEGMNAFLEKRKPNF  258 (261)
T ss_dssp             ------HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCC
T ss_pred             ------HHHHHHHHHHhhcCCHHHHHHHHHHHhhHHHhhcCHHHHHHHHHHHccCCCCC
Confidence                  2356778888777888999999999999  99999999999999999988775

>4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile}

Probab=100.00  E-value=2.3e-48  Score=416.02  Aligned_cols=286  Identities=20%  Similarity=0.283  Sum_probs=227.0

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcCCCCchhhhhccCCC--c
Q 004972            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAG--D   78 (721)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~--~   78 (721)
                      ++.|.+++ +++|++||||||+ .|+||.+|+.+|.+++++++.|+++|+|||||.| ++||+|+|++++.......  .
T Consensus         8 ~e~vl~e~-~~~Va~itLnrP~~~NAl~~~m~~~l~~al~~~~~d~~vr~vvltg~G~~~FcaG~Dl~~~~~~~~~~~~~   86 (353)
T 4hdt_A            8 NEDVLVNV-EGGVGLLTLNRPKAINSLTHGMVTTMAERLAAWENDDSVRAVLLTGAGERGLCAGGDVVAIYHSAKADGAE   86 (353)
T ss_dssp             CCSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSBSBCCBCHHHHHHHHHTTSHH
T ss_pred             CCcEEEEE-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEeCCCCCEecCcCHHHHhhccchhhHH
Confidence            57899999 7999999999996 7999999999999999999999999999999998 6999999999986532221  1


Q ss_pred             ccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHH
Q 004972           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSK  155 (721)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~  155 (721)
                      ...+.....+++ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|+|++| .+
T Consensus        87 ~~~~~~~~~~~~-~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~iGl~p~~g~~~~l~rl~g-~~  164 (353)
T 4hdt_A           87 ARRFWFDEYRLN-AHIGRYPKPYVSIMDGIVMGGGVGVGAHGNVRVVTDTTKMAMPEVGIGFIPDVGGTYLLSRAPG-KL  164 (353)
T ss_dssp             HHHHHHHHHHHH-HHHHHCSSCEEEEECBEEETHHHHHHTTSSEEEECTTCEEECCGGGGTCCCCTTHHHHHHTSST-TH
T ss_pred             HHHHHHHHHHHH-HHHHHCCCCEEEEeECceeecCccccCCcCeeccchhccccCcccccccCCCccceehhhhhhh-HH
Confidence            222223334555 6699999999999999999999999999999999999999999999999997   899999999 69


Q ss_pred             HHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCch----------------hhhhhhccCCCCCcHH
Q 004972          156 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKP----------------WIRSLHRTDKLGSLSE  219 (721)
Q Consensus       156 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~----------------~~~~~~~~~~~~~~~~  219 (721)
                      |++|++||++++|+||+++||||+|||++++++.+.+++.+.......                .+...+.   ..++.+
T Consensus       165 a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~la~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~f~---~~~~~~  241 (353)
T 4hdt_A          165 GLHAALTGAPFSGADAIVMGFADHYVPHDKIDEFTRAVIADGVDAALAAHAQEPPASPLAEQRSWIDECYT---GDTVAD  241 (353)
T ss_dssp             HHHHHHHCCCBCHHHHHHHTSCSEECCGGGHHHHHHHHHHHCHHHHHHHHCBCCCCCHHHHTHHHHHHHTT---CSSHHH
T ss_pred             HHHHHhcCCCCCHHHHHHcCCCcEEeCHHHHHHHHHHHHHhchhHHHHHhcccCCccchHHHHHHHHHHhC---CCCHHH
Confidence            999999999999999999999999999999999999988763321100                0000000   011111


Q ss_pred             HHHHHH-----HHHHHHHHhCC-CChhHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHhCCHHHHHHHHHHH--Hhhhhc
Q 004972          220 AREVLK-----LARLQAKKTAP-NMPQHQACLDVIEEGIVH-GGYSGVLKEAKVFKELVMLDTSRGLVHVFF--AQRATS  290 (721)
Q Consensus       220 ~~~~~~-----~~~~~~~~~~~-~~~A~~~~~~~i~~~~~~-~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~--~~r~~~  290 (721)
                      ....+.     .+.+..++... .-.|+..+|+.++++... +++++++.|.+.+..++.|+|++||++||+  +||+|+
T Consensus       242 i~~~L~~~~~~~a~~~a~~la~~sP~a~~~~k~~l~~~~~~~sl~e~l~~E~~~~~~~~~s~D~~EGvrAfl~dekR~P~  321 (353)
T 4hdt_A          242 IIAALRAHDAPAAGEAADLIATRSPIALSVTLESVRRAAKLQSLEDTLRQEYRVSCASLKSHDLVEGIRAQLVDKDRNPK  321 (353)
T ss_dssp             HHHHHHHHCSHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCC
T ss_pred             HHHHHHhcccHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhCCchHHHHHhhhhhCcCCCCC
Confidence            111111     11122222233 334888899999998876 799999999999999999999999999999  999999


Q ss_pred             CCCC
Q 004972          291 KVPN  294 (721)
Q Consensus       291 ~~~~  294 (721)
                      ++|.
T Consensus       322 w~p~  325 (353)
T 4hdt_A          322 WRPA  325 (353)
T ss_dssp             CSSC
T ss_pred             CCCC
Confidence            8763

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus}

Probab=100.00  E-value=1.2e-48  Score=401.35  Aligned_cols=246  Identities=28%  Similarity=0.423  Sum_probs=221.3

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcc
Q 004972            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (721)
Q Consensus         1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   79 (721)
                      |+ +.|.++. +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.........
T Consensus         5 m~-~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   82 (256)
T 3trr_A            5 MA-DEVLIEQ-RDRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGNFCAGMDLKAFVSGEAVLSE   82 (256)
T ss_dssp             CC-CSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEGGGCCCCCBCHHHHHHTCCCEET
T ss_pred             CC-CceEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCceecCcCHHHhccccchhhh
Confidence            44 5689999 7999999999995 7999999999999999999999999999999999999999999998753221111


Q ss_pred             cccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHH
Q 004972           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKA  156 (721)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a  156 (721)
                      ..   .  . + ..+ ++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|+|++|..+|
T Consensus        83 ~~---~--~-~-~~~-~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a  154 (256)
T 3trr_A           83 RG---L--G-F-TNV-PPRKPIIAAVEGFALAGGTELVLSCDLVVAGRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQVA  154 (256)
T ss_dssp             TE---E--T-T-SSS-CCSSCEEEEECSBCCTHHHHHHHTSSEEEEETTCEECCCGGGGTCCCCSSHHHHHHHHSCHHHH
T ss_pred             hh---h--h-H-HHh-cCCCCEEEEECCeeeechhHHHHhCCEEEECCCCEEEehhhccCCCCCccHHHHHHHHhCHHHH
Confidence            11   1  1 2 224 899999999999999999999999999999999999999999999997   8999999999999


Q ss_pred             HHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004972          157 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  236 (721)
Q Consensus       157 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (721)
                      ++|++||++++|+||+++||||+|||++++++++.++|+++++.+|.+                                
T Consensus       155 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a--------------------------------  202 (256)
T 3trr_A          155 MELALTGESFTAEDAAKYGFINRLVDDGQALDTALELAAKITANGPLA--------------------------------  202 (256)
T ss_dssp             HHHHHHCCCEEHHHHGGGTCCSEEECTTCHHHHHHHHHHHHHTSCHHH--------------------------------
T ss_pred             HHHHHhCCCcCHHHHHHCCCeeEecChHHHHHHHHHHHHHHHcCCHHH--------------------------------
Confidence            999999999999999999999999999999999999999999988643                                


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004972          237 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  292 (721)
Q Consensus       237 ~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  292 (721)
                          ...+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|++.
T Consensus       203 ----~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~  254 (256)
T 3trr_A          203 ----VAATKRIIIESASWAPEEAFAKQGEILMPIFVSEDAKEGAKAFAEKRAPVWQ  254 (256)
T ss_dssp             ----HHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred             ----HHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCCC
Confidence                3456788999999999999999999999999999999999999999988764

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens}

Probab=100.00  E-value=1.9e-48  Score=405.97  Aligned_cols=250  Identities=21%  Similarity=0.333  Sum_probs=221.0

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccc
Q 004972            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL   81 (721)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   81 (721)
                      ...+.++. +++|++||||||+ .|+||.+|+++|.++++.++.|+++++|||||.|+.||+|+|++++...........
T Consensus        32 ~~~v~~~~-~~~V~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~  110 (287)
T 2vx2_A           32 PRPTSARQ-LDGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGHDLKELTEEQGRDYHAE  110 (287)
T ss_dssp             CCSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHTTTTCTTCCEEEEEESSSEEECCSCCC-CCGGGCHHHHHH
T ss_pred             CcceEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhcccchhHHHH
Confidence            35788998 7899999999995 699999999999999999999999999999999999999999998754321111111


Q ss_pred             cchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHH
Q 004972           82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIE  158 (721)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~  158 (721)
                      +.....+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   ++ |+|++|..+|++
T Consensus       111 ~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~-L~r~vG~~~A~~  188 (287)
T 2vx2_A          111 VFQTCSKVM-MHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLFCSTPGVA-LARAVPRKVALE  188 (287)
T ss_dssp             HHHHHHHHH-HHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCHHHHHH-HHTTSCHHHHHH
T ss_pred             HHHHHHHHH-HHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEcCCCEEECchhhhCCCCchHHHH-HHHHhhHHHHHH
Confidence            222344555 6689999999999999999999999999999999999999999999999997   77 999999999999


Q ss_pred             HHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCC
Q 004972          159 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM  238 (721)
Q Consensus       159 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (721)
                      |++||++++|+||+++||||+|||++++++++.++|++|++.+|..                                  
T Consensus       189 llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a----------------------------------  234 (287)
T 2vx2_A          189 MLFTGEPISAQEALLHGLLSKVVPEAELQEETMRIARKIASLSRPV----------------------------------  234 (287)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHH----------------------------------
T ss_pred             HHHhCCCCCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHcCCHHH----------------------------------
Confidence            9999999999999999999999999999999999999999987642                                  


Q ss_pred             hhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          239 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       239 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                        ...+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|.+
T Consensus       235 --~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~f  285 (287)
T 2vx2_A          235 --VSLGKATFYKQLPQDLGTAYYLTSQAMVDNLALRDGQEGITAFLQKRKPVW  285 (287)
T ss_dssp             --HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCC
T ss_pred             --HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence              234577888888889999999999999999999999999999999988764

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}

Probab=100.00  E-value=1.9e-49  Score=415.39  Aligned_cols=253  Identities=25%  Similarity=0.325  Sum_probs=179.4

Q ss_pred             CCcEEEEEecC-cEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhh---ccCCC
Q 004972            3 APRVTMEVGND-GVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQK---VHGAG   77 (721)
Q Consensus         3 ~~~v~~~~~~~-~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~---~~~~~   77 (721)
                      ++.|.+++ ++ +|++||||||+ .|+||.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++..   .....
T Consensus        28 ~~~v~~~~-~~~~Va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~  106 (298)
T 3qre_A           28 QDAVLYEA-TPGGVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGRGFCAGAYLGSADAAAGYDKTM  106 (298)
T ss_dssp             CCSEEEEE-CTTSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSEECC---------------
T ss_pred             CCeEEEEE-eCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhcccccccc
Confidence            36799999 67 99999999995 699999999999999999999999999999999999999999999864   11110


Q ss_pred             ----cccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccc
Q 004972           78 ----DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRL  150 (721)
Q Consensus        78 ----~~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~  150 (721)
                          ....+......++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|+|+
T Consensus       107 ~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~  185 (298)
T 3qre_A          107 AKAKDANLADLVGERPP-HFVTMLRKPVIAAINGPCVGIGLTQALMCDVRFAAAGAKFAAVFARRGLIAEFGISWILPRL  185 (298)
T ss_dssp             --------------CCT-TGGGGSSSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECCCCHHHHHCTTSHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHH-HHHHhCCCCEEEEECCceeecchHHHhhCCEEEEcCCCEEECcccccCCCcchhHHHHHHHh
Confidence                1111111222334 5688999999999999999999999999999999999999999999999997   8999999


Q ss_pred             cCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhc-CchhhhhhhccCCCCCcHHHHHHHHHHHH
Q 004972          151 VGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR-RKPWIRSLHRTDKLGSLSEAREVLKLARL  229 (721)
Q Consensus       151 ~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (721)
                      +|..+|++|++||++++|+||+++||||+|||++++++++.++|++|++. +|.                          
T Consensus       186 vG~~~A~ellltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~A~~la~~~~p~--------------------------  239 (298)
T 3qre_A          186 TSWAVALDLLLSGRTFLAEEAAQLGLVKEVVTPEQLMPRALEYAEDIARYCSPS--------------------------  239 (298)
T ss_dssp             SCHHHHHHHHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHHHSCHH--------------------------
T ss_pred             cCHHHHHHHHHcCCCCCHHHHHHcCCCeEecCHHHHHHHHHHHHHHHHccCCHH--------------------------
Confidence            99999999999999999999999999999999999999999999999998 764                          


Q ss_pred             HHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCC
Q 004972          230 QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  293 (721)
Q Consensus       230 ~~~~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~  293 (721)
                                |...+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|...+
T Consensus       240 ----------a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~Egv~AF~ekR~P~f~~  293 (298)
T 3qre_A          240 ----------SMAVIKRQVYGDATRDVVEATSHAEVLLREAMPRPDVIEGIVSFLEKRPPQFPS  293 (298)
T ss_dssp             ----------HHHHHHHHHHGGGGC---------------------------------------
T ss_pred             ----------HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCC
Confidence                      334667889998888999999999999999999999999999999999988654

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A

Probab=100.00  E-value=6.3e-48  Score=401.33  Aligned_cols=253  Identities=21%  Similarity=0.305  Sum_probs=223.0

Q ss_pred             CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCC---
Q 004972            2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG---   77 (721)
Q Consensus         2 ~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~---   77 (721)
                      ++++|.+++++++|++||||||+ .|++|.+|+.+|.++++++++|+++|+|||||.|++||+|+|++++.......   
T Consensus         1 ~~~~v~~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~   80 (275)
T 1dci_A            1 AYESIQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGD   80 (275)
T ss_dssp             CCSSEEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCHHHHHHHHTSCCCS
T ss_pred             CCceEEEEEcCCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhcccccccc
Confidence            35678898855789999999995 79999999999999999999999999999999999999999999986531110   


Q ss_pred             c-------ccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---cccc
Q 004972           78 D-------VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRL  147 (721)
Q Consensus        78 ~-------~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l  147 (721)
                      .       ...+....+.++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l  159 (275)
T 1dci_A           81 DVARIAWYLRDLISRYQKTF-TVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRL  159 (275)
T ss_dssp             SHHHHHHHHHHHHHHHHHHH-HHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHG
T ss_pred             hhhhhhHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHH
Confidence            0       001112233455 6689999999999999999999999999999999999999999999999997   8999


Q ss_pred             ccccCH-HHHHHHHHcCCCcCHHHHHHcCCccEEcCC-chHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHH
Q 004972          148 PRLVGL-SKAIEMMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLK  225 (721)
Q Consensus       148 ~r~~G~-~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (721)
                      +|++|. .+|++|++||++++|+||+++||||+|||+ +++++++.++|+++++.+|.+                     
T Consensus       160 ~r~vG~~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~la~~~p~a---------------------  218 (275)
T 1dci_A          160 PKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKSPVA---------------------  218 (275)
T ss_dssp             GGTCSCHHHHHHHHHHCCEEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHHSCHHH---------------------
T ss_pred             HHHhCcHHHHHHHHHcCCCCCHHHHHHcCCcceecCChHHHHHHHHHHHHHHHhCCHHH---------------------
Confidence            999999 999999999999999999999999999999 999999999999999988643                     


Q ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---hhhcC
Q 004972          226 LARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQ---RATSK  291 (721)
Q Consensus       226 ~~~~~~~~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~---r~~~~  291 (721)
                                     ...+|++++.+...+++++++.|.+.+..++.|+|++|++++|++|   |+|.+
T Consensus       219 ---------------~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ek~~~r~p~f  272 (275)
T 1dci_A          219 ---------------VQGSKINLIYSRDHSVDESLDYMATWNMSMLQTQDIIKSVQAAMEKKDSKSITF  272 (275)
T ss_dssp             ---------------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSHHHHHHHHHHHTTCCGGGCCC
T ss_pred             ---------------HHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCCC
Confidence                           3356778888888899999999999999999999999999999999   77764

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A

Probab=100.00  E-value=9.7e-49  Score=404.61  Aligned_cols=252  Identities=27%  Similarity=0.402  Sum_probs=219.8

Q ss_pred             CC-CCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcCCCCchhhhhccCCC
Q 004972            1 MA-APRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAG   77 (721)
Q Consensus         1 m~-~~~v~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~   77 (721)
                      |+ ++.|.++. +++|++|||||| +.|+||.+|+.+|.+++++++.|+++|+|||||.| ++||+|+|++++.......
T Consensus         5 m~~~~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~   83 (267)
T 3r9t_A            5 MTDAPGALAER-RGNVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIARRENLY   83 (267)
T ss_dssp             ---CCSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCHHHHHTTCCCS
T ss_pred             CCCCCcEEEEE-ECCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceeCCcChHHHhcccchh
Confidence            44 46799999 799999999999 57999999999999999999999999999999999 5999999999987543222


Q ss_pred             cccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHH
Q 004972           78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLS  154 (721)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~  154 (721)
                      .. .........+ . ..++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|+|++|..
T Consensus        84 ~~-~~~~~~~~~~-~-~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~  160 (267)
T 3r9t_A           84 HP-DHPEWGFAGY-V-RHFIDKPTIAAVNGTALGGGTELALASDLVVADERAQFGLPEVKRGLIAAAGGVFRIAEQLPRK  160 (267)
T ss_dssp             CT-TCGGGCGGGT-T-TCCCSSCEEEEECSEECTHHHHHHHHSSEEEEETTCEECCGGGGTTCCCTTTHHHHHHHHSCHH
T ss_pred             hH-HHHhHHHHHH-H-HHhCCCCEEEEECCEEEhHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHcCHH
Confidence            11 1111100112 1 24899999999999999999999999999999999999999999999997   88999999999


Q ss_pred             HHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004972          155 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  234 (721)
Q Consensus       155 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (721)
                      +|++|++||++++|+||+++||||+|||++++++++.++|++|++.+|.+                              
T Consensus       161 ~A~~l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a------------------------------  210 (267)
T 3r9t_A          161 VAMRLLLTGEPLSAAAARDWGLINEVVEAGSVLDAALALASAITVNAPLS------------------------------  210 (267)
T ss_dssp             HHHHHHHHCCCEEHHHHHHHTSSSEEECTTCHHHHHHHHHHHHHTSCHHH------------------------------
T ss_pred             HHHHHHHcCCCCCHHHHHHCCCccEEcChhHHHHHHHHHHHHHHhCChHH------------------------------
Confidence            99999999999999999999999999999999999999999999988643                              


Q ss_pred             CCCChhHHHHHHH---HHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004972          235 APNMPQHQACLDV---IEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  292 (721)
Q Consensus       235 ~~~~~A~~~~~~~---i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  292 (721)
                            ...+|++   ++.+...+++++++.|.+.+..++.|+|++|++++|++||+|.+.
T Consensus       211 ------~~~~K~~~~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~P~f~  265 (267)
T 3r9t_A          211 ------VQASKRIAYGVDDGVVVGDEPGWDRTMREMRALLKSEDAKEGPRAFAEKREPVWQ  265 (267)
T ss_dssp             ------HHHHHHHHTTEETTEEGGGHHHHHHHHHHHHHHTTSSHHHHHHHHHHTTSCCCCC
T ss_pred             ------HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCC
Confidence                  3355677   777778889999999999999999999999999999999988753

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A

Probab=100.00  E-value=5.7e-49  Score=404.89  Aligned_cols=246  Identities=26%  Similarity=0.319  Sum_probs=202.9

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCccccc
Q 004972            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM   82 (721)
Q Consensus         4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (721)
                      +.|.++. +++|++||||||+ .|++|.+|+.+|.++++.+++|+++|+|||||.|++||+|+|++++....... ... 
T Consensus        11 ~~v~~~~-~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-~~~-   87 (262)
T 3r9q_A           11 PAVRVEK-AGPVTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGDNGTFCAGADLKAMGTDRGNE-LHP-   87 (262)
T ss_dssp             CSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCTTTTTSTTSCC-CCT-
T ss_pred             CEEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHhccChhh-HHH-
Confidence            3589999 7999999999995 69999999999999999999999999999999999999999999986533211 110 


Q ss_pred             chHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHHH
Q 004972           83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEM  159 (721)
Q Consensus        83 ~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~l  159 (721)
                       ......+ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|+|++|..+|++|
T Consensus        88 -~~~~~~~-~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l  165 (262)
T 3r9q_A           88 -HGPGPMG-PSRLRLSKPVIAAISGHAVAGGIELALWCDLRVVEEDAVLGVFCRRWGVPLIDGGTIRLPRLIGHSRAMDL  165 (262)
T ss_dssp             -TSSCTTS-STTCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTHHHHTCCCCSSHHHHHHHHHCHHHHHHH
T ss_pred             -hhhhHHH-HHHHhCCCCEEEEECCeeehhhhHHHHhCCEEEEeCCCEEecchhccCCCCCccHHHHHHHHhCHHHHHHH
Confidence             0011122 2356899999999999999999999999999999999999999999999997   8999999999999999


Q ss_pred             HHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCCh
Q 004972          160 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP  239 (721)
Q Consensus       160 ~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (721)
                      ++||++++|+||+++||||+|||++++++++.++|++|++.+|.+                                   
T Consensus       166 ~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a-----------------------------------  210 (262)
T 3r9q_A          166 ILTGRPVHANEALDIGLVNRVVARGQAREAAETLAAEIAAFPQQC-----------------------------------  210 (262)
T ss_dssp             HHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHHSCHHH-----------------------------------
T ss_pred             HHcCCcCCHHHHHHcCCccEecChhHHHHHHHHHHHHHHhCCHHH-----------------------------------
Confidence            999999999999999999999999999999999999999988643                                   


Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004972          240 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  292 (721)
Q Consensus       240 A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  292 (721)
                       ...+|++++.....+++++++.|.+ +..++.| |++|++++|++||++.+.
T Consensus       211 -~~~~K~~~~~~~~~~l~~~l~~e~~-~~~~~~s-d~~Eg~~AF~ekr~p~~~  260 (262)
T 3r9q_A          211 -VRADRDSAIAQWGMAEEAALDNEFG-SIERVAT-EALEGAGRFAAGEGRHGA  260 (262)
T ss_dssp             -HHHHHHHHHHTTTSCHHHHHHHHHT-HHHHHHC-------------------
T ss_pred             -HHHHHHHHHhhhcCCHHHHHHHHHH-HHHHhcc-HHHHHHHHHHcCCCCCCC
Confidence             3456788999999999999999999 9999999 999999999999988753

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}

Probab=100.00  E-value=1.3e-48  Score=406.51  Aligned_cols=251  Identities=25%  Similarity=0.346  Sum_probs=211.5

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccc
Q 004972            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL   81 (721)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   81 (721)
                      .++|.++. +++|++||||||+ .|++|.+|+.+|.++++++++|+++|+|||||.|++||+|+|++++...........
T Consensus        19 ~~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   97 (278)
T 4f47_A           19 GPDALVEQ-RGHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAGGYFCAGMDLKAATKKPPGDSFKD   97 (278)
T ss_dssp             CCSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCCC-------------------
T ss_pred             CCceEEEE-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCcccCCcChHhhhccchhhhHHH
Confidence            35688999 7999999999995 799999999999999999999999999999999999999999999865432211110


Q ss_pred             cchHHHHHHHHHHh---hCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHH
Q 004972           82 MPDVSVELVVNLIE---DCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSK  155 (721)
Q Consensus        82 ~~~~~~~~~~~~l~---~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~  155 (721)
                       ....+.++ +.+.   ++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|+|++|..+
T Consensus        98 -~~~~~~~~-~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~  175 (278)
T 4f47_A           98 -GSYDPSRI-DALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAESAKFGISEAKWSLYPMGGSAVRLVRQIPYTV  175 (278)
T ss_dssp             ----CTTCB-TTTTBSCCCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCTTSHHHHHHHHSCHHH
T ss_pred             -HHHHHHHH-HHHHHhcCCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHhCHHH
Confidence             00111222 3455   899999999999999999999999999999999999999999999997   899999999999


Q ss_pred             HHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004972          156 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  235 (721)
Q Consensus       156 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (721)
                      |++|++||++++|+||+++||||+|+|++++++++.++|+++++.+|.                                
T Consensus       176 a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~--------------------------------  223 (278)
T 4f47_A          176 ACDLLLTGRHITAAEAKEMGLVGHVVPDGQALTKALEIAEIIAANGPL--------------------------------  223 (278)
T ss_dssp             HHHHHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHHSCHH--------------------------------
T ss_pred             HHHHHHcCCcCCHHHHHHCCCceEeeChhHHHHHHHHHHHHHHhCCHH--------------------------------
Confidence            999999999999999999999999999999999999999999998864                                


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004972          236 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  292 (721)
Q Consensus       236 ~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  292 (721)
                          |...+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|.+.
T Consensus       224 ----a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~Af~ekr~p~f~  276 (278)
T 4f47_A          224 ----AVQAILRTIRETEGMHENEAFKIDTRIGIEVFLSDDAKEGPQAFAQKRKPNFQ  276 (278)
T ss_dssp             ----HHHHHHHHHHHTTTSCHHHHHHHHHHHHGGGGGSSHHHHHHHHHHTTSCCCCC
T ss_pred             ----HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCC
Confidence                33456788999888999999999999999999999999999999999988753

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3

Probab=100.00  E-value=2.3e-48  Score=401.68  Aligned_cols=250  Identities=24%  Similarity=0.246  Sum_probs=220.4

Q ss_pred             CCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhc-c-CCCccc
Q 004972            3 APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKV-H-GAGDVS   80 (721)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~-~-~~~~~~   80 (721)
                      ++.+.+++++++|++||||||+.|++|.+|+++|.+++++++.|+++|+|||||.|+.||+|+|++ +... . ......
T Consensus         9 ~~~v~~~~~~~~v~~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~-~~~~~~~~~~~~~   87 (264)
T 1wz8_A            9 YPGLAFAWPRPGVLEITFRGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFG-LIEEMRASHEALL   87 (264)
T ss_dssp             CTTEEEEEEETTEEEEEECCSGGGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGGGCCBCCBCHH-HHHHHHHCHHHHH
T ss_pred             CCeEEEEEccCCEEEEEeCCCCcCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCCcccCccc-cccccccchHHHH
Confidence            456888874478999999999999999999999999999999999999999999999999999999 7542 1 101011


Q ss_pred             ccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHH
Q 004972           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAI  157 (721)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~  157 (721)
                      .+....++++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|+|++|..+|+
T Consensus        88 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~  166 (264)
T 1wz8_A           88 RVFWEARDLV-LGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAK  166 (264)
T ss_dssp             HHHHHHHHHH-HHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCHHHHH
T ss_pred             HHHHHHHHHH-HHHHcCCCCEEEEECCeeechhHHHHHhCCEEEecCCCEEeCchhhcCcCCCccHHHHHHHHhCHHHHH
Confidence            1223344556 6689999999999999999999999999999999999999999999999996   89999999999999


Q ss_pred             HHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCC
Q 004972          158 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN  237 (721)
Q Consensus       158 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (721)
                      +|++||++++|+||+++||||+|||++++.+++.++++++++.+|..                                 
T Consensus       167 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a---------------------------------  213 (264)
T 1wz8_A          167 YHLLLNEPLTGEEAERLGLVALAVEDEKVYEKALEVAERLAQGPKEA---------------------------------  213 (264)
T ss_dssp             HHHHHTCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHH---------------------------------
T ss_pred             HHHHcCCCCCHHHHHHCCCceeecChhHHHHHHHHHHHHHHhCCHHH---------------------------------
Confidence            99999999999999999999999999999999999999999987642                                 


Q ss_pred             ChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          238 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       238 ~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                         ...+|++++.+... ++++++.|.+.+..++.|+|+++++++|++||+|.+
T Consensus       214 ---~~~~K~~l~~~~~~-~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f  263 (264)
T 1wz8_A          214 ---LHHTKHALNHWYRS-FLPHFELSLALEFLGFSGKELEEGLKALKEKRPPEF  263 (264)
T ss_dssp             ---HHHHHHHHHHHHHT-THHHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCCC
T ss_pred             ---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcChHHHHHHHHHHccCCCCC
Confidence               23456778877777 899999999999999999999999999999988763

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP}

Probab=100.00  E-value=3.5e-48  Score=401.87  Aligned_cols=252  Identities=23%  Similarity=0.291  Sum_probs=211.6

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEe-----CC-CCCcCCCCchhhhhccC
Q 004972            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTG-----NG-GRFSGGFDINVFQKVHG   75 (721)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg-----~g-~~F~aG~Dl~~~~~~~~   75 (721)
                      ++.|.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||     .| ++||+|+|++++.....
T Consensus         9 ~~~v~~~~-~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~~~~~G~~~F~aG~Dl~~~~~~~~   87 (275)
T 4eml_A            9 YDDILYYK-AGGIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGDQSVRGEGGY   87 (275)
T ss_dssp             CSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTSCCEEECCBCCC-------
T ss_pred             CceEEEEE-ECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCcCcCCCCceeCCcChhhhhcccc
Confidence            57799999 7999999999995 69999999999999999999999999999999     88 59999999999864211


Q ss_pred             CCcccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccC
Q 004972           76 AGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVG  152 (721)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G  152 (721)
                      .............++ +.+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+   +++|+|++|
T Consensus        88 ~~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~~g~~~L~r~vG  166 (275)
T 4eml_A           88 IDDQGTPRLNVLDLQ-RLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGFGSSYLARIVG  166 (275)
T ss_dssp             -------CCCHHHHH-HHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHHHC
T ss_pred             cchhhHHHHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHhH
Confidence            111111111234555 6789999999999999999999999999999999999999999999998875   899999999


Q ss_pred             HHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHH
Q 004972          153 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK  232 (721)
Q Consensus       153 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (721)
                      ..+|++|++||++++|+||+++||||+|||++++++++.++|++|++.+|.++                           
T Consensus       167 ~~~A~~llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~---------------------------  219 (275)
T 4eml_A          167 QKKAREIWYLCRQYSAQEAERMGMVNTVVPVDRLEEEGIQWAKEILSKSPLAI---------------------------  219 (275)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHH---------------------------
T ss_pred             HHHHHHHHHhCCCcCHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCCHHHH---------------------------
Confidence            99999999999999999999999999999999999999999999999887432                           


Q ss_pred             HhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCC
Q 004972          233 KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  293 (721)
Q Consensus       233 ~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~  293 (721)
                               ..+|++++..... .....+.|.+.+..++.|+|++|++.+|++||+|...+
T Consensus       220 ---------~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~eg~~AF~ekR~p~f~~  270 (275)
T 4eml_A          220 ---------RCLKAAFNADCDG-QAGLQELAGNATLLYYMTEEGSEGKQAFLEKRPPDFSQ  270 (275)
T ss_dssp             ---------HHHHHHHHHTTSH-HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCTT
T ss_pred             ---------HHHHHHHHhhhcc-chhHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCCC
Confidence                     3456666665432 33445678888889999999999999999999987543

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A

Probab=100.00  E-value=1.8e-48  Score=403.71  Aligned_cols=250  Identities=22%  Similarity=0.274  Sum_probs=212.1

Q ss_pred             CCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCC-cccc
Q 004972            3 APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG-DVSL   81 (721)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~-~~~~   81 (721)
                      +++|.+++++++|++||||||+.|++|.+|+.+|.++++.+++|+++|+|||||.|++||+|+|++++....... ....
T Consensus        12 ~~~v~~~~~~~~v~~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   91 (272)
T 3qk8_A           12 FPSLRFEPGEHGVLNLVLDSPGLNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEGKAFSSGGSFELIDETIGDYEGRIR   91 (272)
T ss_dssp             CTTEEEEECSTTEEEEEECCHHHHEECHHHHHHHHHHHHHHHHCTTCSEEEEEESSSCSBCEECHHHHHHHHHCHHHHHH
T ss_pred             CCeEEEEEeCCCEEEEEECCCCcCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCeeCCcCHHHHhccccchHHHHH
Confidence            578999994358999999999999999999999999999999999999999999999999999999986532111 1112


Q ss_pred             cchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHH
Q 004972           82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIE  158 (721)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~  158 (721)
                      +....++++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+   +++|+|++|..+|++
T Consensus        92 ~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~  170 (272)
T 3qk8_A           92 IMREARDLV-LNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASATAKIIDGHTKLGVAAGDHAAICWPLLVGMAKAKY  170 (272)
T ss_dssp             HHHHHHHHH-HHHHTCCSCEEEEECSEEEHHHHHHHHHSSEEEEETTCEEECCHHHHTSCSCSSHHHHTHHHHCHHHHHH
T ss_pred             HHHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhCHHHHHH
Confidence            223344556 6799999999999999999999999999999999999999999999999997   899999999999999


Q ss_pred             HHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCC
Q 004972          159 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM  238 (721)
Q Consensus       159 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (721)
                      |++||++++|+||+++||||+|||++++++++.++|++|++.+|.+++                                
T Consensus       171 l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------------------------------  218 (272)
T 3qk8_A          171 YLLTCETLSGEEAERIGLVSTCVDDDEVLPTATRLAENLAQGAQNAIR--------------------------------  218 (272)
T ss_dssp             HHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHH--------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCCcEeeCHhHHHHHHHHHHHHHHcCCHHHHH--------------------------------
Confidence            999999999999999999999999999999999999999998875332                                


Q ss_pred             hhHHHHHHHHHHhhc---CCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCC
Q 004972          239 PQHQACLDVIEEGIV---HGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  293 (721)
Q Consensus       239 ~A~~~~~~~i~~~~~---~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~  293 (721)
                          .+|++++....   .+++..++.|    ..++.|+|++|++++|++||+|.+..
T Consensus       219 ----~~K~~l~~~~~~~~~~~~~~~~~e----~~~~~s~d~~eg~~Af~ekR~p~f~g  268 (272)
T 3qk8_A          219 ----WTKRSLNHWYRMFGPTFETSLGLE----FLGFTGPDVQEGLAAHRQKRPARFTD  268 (272)
T ss_dssp             ----HHHHHHHHHHHHTHHHHHHHHHHH----HHHTTSSHHHHHHHHHHTTSCCCC--
T ss_pred             ----HHHHHHHHHHhhcchhHHHHHHHH----HHHhCCHHHHHHHHHHHcCCCCCCCC
Confidence                34455544332   2344444444    47899999999999999999987643

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum}

Probab=100.00  E-value=5.5e-48  Score=398.53  Aligned_cols=247  Identities=24%  Similarity=0.367  Sum_probs=213.7

Q ss_pred             CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCccc
Q 004972            2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS   80 (721)
Q Consensus         2 ~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~   80 (721)
                      +++.|.+++ +++|++||||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++..........
T Consensus        13 ~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~   91 (265)
T 3qxi_A           13 TEPEVLVEQ-RDRILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGAGGSFCAGMDLKAFARGENVVVEG   91 (265)
T ss_dssp             --CCEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCCCCSBC-------CCCEETT
T ss_pred             CCCeEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCeeCCCChhhhhccchhhhhh
Confidence            357899999 7999999999995 69999999999999999999999999999999999999999999986532211110


Q ss_pred             ccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHH
Q 004972           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAI  157 (721)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~  157 (721)
                         ... . + ..+.. ||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|+|++|..+|+
T Consensus        92 ---~~~-~-~-~~~~~-~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~  164 (265)
T 3qxi_A           92 ---RGL-G-F-TERPP-AKPLIAAVEGYALAGGTELALATDLIVAARDSAFGIPEVKRGLVAGGGGLLRLPERIPYAIAM  164 (265)
T ss_dssp             ---TEE-T-T-TTSCC-SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHSCHHHHH
T ss_pred             ---hhh-h-H-HHhhC-CCCEEEEECCceeHHHHHHHHhCCEEEEcCCCEEECcccccCcCCcccHHHHHHHHhCHHHHH
Confidence               111 1 2 22334 9999999999999999999999999999999999999999999997   89999999999999


Q ss_pred             HHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCC
Q 004972          158 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN  237 (721)
Q Consensus       158 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (721)
                      +|++||++++|+||+++||||+|||++++++++.++|++|++.+|.+                                 
T Consensus       165 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a---------------------------------  211 (265)
T 3qxi_A          165 ELALTGDNLSAERAHALGMVNVLAEPGAALDAAIALAEKITANGPLA---------------------------------  211 (265)
T ss_dssp             HHHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHTSCHHH---------------------------------
T ss_pred             HHHHcCCCcCHHHHHHCCCccEeeChhHHHHHHHHHHHHHHcCCHHH---------------------------------
Confidence            99999999999999999999999999999999999999999988643                                 


Q ss_pred             ChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004972          238 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  292 (721)
Q Consensus       238 ~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  292 (721)
                         ...+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|.+.
T Consensus       212 ---~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~  263 (265)
T 3qxi_A          212 ---VAATKRIITESRGWSLDTRFAQQMKILFPIFTSNDAKEGAIAFAEKRPPRWT  263 (265)
T ss_dssp             ---HHHHHHHHHHHTTCCTTTHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCCC
T ss_pred             ---HHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCC
Confidence               3356788888888899999999999999999999999999999999988764

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3

Probab=100.00  E-value=5.8e-48  Score=401.59  Aligned_cols=249  Identities=22%  Similarity=0.292  Sum_probs=206.1

Q ss_pred             CCCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCc--
Q 004972            2 AAPRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD--   78 (721)
Q Consensus         2 ~~~~v~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~--   78 (721)
                      .++.+.++. +++|++|||||| +.|++|.+|+++|.+++++++.|+++ +|||||.|+.||+|+|++++........  
T Consensus        24 ~~~~i~~~~-~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~v-~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~  101 (280)
T 2f6q_A           24 GFETLVVTS-EDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNGDYYSSGNDLTNFTDIPPGGVEE  101 (280)
T ss_dssp             ECSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEESTTCSBCCBCC----CCCTTHHHH
T ss_pred             CCCeEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCE-EEEEeCCCCCcccCCCHHHHhhcCcchhhH
Confidence            356788998 789999999999 47999999999999999999999999 9999999999999999998854221110  


Q ss_pred             -ccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHH
Q 004972           79 -VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLS  154 (721)
Q Consensus        79 -~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~  154 (721)
                       ...+....++++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|+|++|..
T Consensus       102 ~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~  180 (280)
T 2f6q_A          102 KAKNNAVLLREFV-GCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPA  180 (280)
T ss_dssp             HHHHHHHHHHHHH-HHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHH-HHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEECCCcEEECchHhhCCCCcccHHHHHHHHhCHH
Confidence             001112334555 6689999999999999999999999999999999999999999999999997   89999999999


Q ss_pred             HHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004972          155 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  234 (721)
Q Consensus       155 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (721)
                      +|++|++||++++|+||+++||||+|||++++++++.++++++++.+|..                              
T Consensus       181 ~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a------------------------------  230 (280)
T 2f6q_A          181 KATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKLPPNA------------------------------  230 (280)
T ss_dssp             HHHHHHTTCCCEEHHHHHHTTSCSEEECTTTHHHHHHHHHHHHTTSCHHH------------------------------
T ss_pred             HHHHHHHcCCCCCHHHHHHCCCcceEECHHHHHHHHHHHHHHHHhCCHHH------------------------------
Confidence            99999999999999999999999999999999999999999999887642                              


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhh
Q 004972          235 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRAT  289 (721)
Q Consensus       235 ~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~  289 (721)
                            ...+|+.++.....+++++++.|.+.+..++.|+|++|++++|++||+|
T Consensus       231 ------~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekR~p  279 (280)
T 2f6q_A          231 ------LRISKEVIRKREREKLHAVNAEECNVLQGRWLSDECTNAVVNFLSRKSK  279 (280)
T ss_dssp             ------HHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHTSHHHHC-----------
T ss_pred             ------HHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCC
Confidence                  2345677777776778999999999999999999999999999999876

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp}

Probab=100.00  E-value=7.3e-48  Score=399.34  Aligned_cols=244  Identities=20%  Similarity=0.266  Sum_probs=218.4

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCC-cccc
Q 004972            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG-DVSL   81 (721)
Q Consensus         4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~-~~~~   81 (721)
                      +.|.++. +++|++||||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++....... ....
T Consensus        28 ~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~  106 (276)
T 3rrv_A           28 TEIDVRA-DGALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAGRAFSAGGDFGYLKELSADADLRAK  106 (276)
T ss_dssp             TTEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHHHHHHCHHHHHH
T ss_pred             CeEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCcccCCcCHHHHhhcccchHHHHH
Confidence            4688998 7999999999996 79999999999999999999999999999999999999999999986532111 1112


Q ss_pred             cchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHH
Q 004972           82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIE  158 (721)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~  158 (721)
                      +....+.++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|+|++|..+|++
T Consensus       107 ~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~e  185 (276)
T 3rrv_A          107 TIRDGREIV-LGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAENAYLADPHVQVGLVAADGGPLTWPLHISLLLAKE  185 (276)
T ss_dssp             HHHHHHHHH-HHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCCSSHHHHGGGTSCHHHHHH
T ss_pred             HHHHHHHHH-HHHHhCCCCEEEEECceeeHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCccHHHHHHHHhCHHHHHH
Confidence            223344556 6799999999999999999999999999999999999999999999999997   899999999999999


Q ss_pred             HHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCC
Q 004972          159 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM  238 (721)
Q Consensus       159 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (721)
                      |++||++++|+||+++||||+||  +++++++.++|+++++.+|.+                                  
T Consensus       186 llltG~~i~A~eA~~~GLv~~vv--~~l~~~a~~~A~~la~~~~~a----------------------------------  229 (276)
T 3rrv_A          186 YALTGTRISAQRAVELGLANHVA--DDPVAEAIACAKKILELPQQA----------------------------------  229 (276)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSEEE--SSHHHHHHHHHHHHHHSCHHH----------------------------------
T ss_pred             HHHcCCCCCHHHHHHcCCHHHHH--HHHHHHHHHHHHHHHcCCHHH----------------------------------
Confidence            99999999999999999999999  899999999999999988643                                  


Q ss_pred             hhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 004972          239 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQR  287 (721)
Q Consensus       239 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r  287 (721)
                        ...+|++++.....+++++++.|...+..++.|+|++|++.+|++||
T Consensus       230 --~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR  276 (276)
T 3rrv_A          230 --VESTKRVLNIHLERAVLASLDYALSAESQSFVTEDFRSIVTKLADKN  276 (276)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHCCC
T ss_pred             --HHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC
Confidence              33567778877777889999999999999999999999999999986

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}

Probab=100.00  E-value=6.3e-48  Score=397.92  Aligned_cols=248  Identities=24%  Similarity=0.321  Sum_probs=205.0

Q ss_pred             CCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccC--C-C-
Q 004972            2 AAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG--A-G-   77 (721)
Q Consensus         2 ~~~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~--~-~-   77 (721)
                      +++.+.++..+++|++||||||+.|++|.+|+.+|.++++.++.|+++|+|||||.|+.||+|+|++++.....  . . 
T Consensus         4 ~~~~~~~~~~~~~v~~itlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   83 (263)
T 3l3s_A            4 SQDGLLGEVLSEGVLTLTLGRAPAHPLSRAMIAALHDALRRAMGDDHVHVLVIHGPGRIFCAGHDLKEIGRHRADPDEGR   83 (263)
T ss_dssp             ----CEEEEESSSEEEEEECSTTTCCCCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCSCSCCCCC-----CCSH
T ss_pred             CccceEEEEeeCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhccccccccH
Confidence            46677777767899999999995599999999999999999999999999999999999999999998865310  1 1 


Q ss_pred             -cccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc--ccccccccCHH
Q 004972           78 -DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG--TQRLPRLVGLS  154 (721)
Q Consensus        78 -~~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~--~~~l~r~~G~~  154 (721)
                       ....+......++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+  +++|+|++|..
T Consensus        84 ~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~~~g~~~~l~r~vG~~  162 (263)
T 3l3s_A           84 AFVTDLFEACSALM-LDLAHCPKPTIALVEGIATAAGLQLMAACDLAYASPAARFCLPGVQNGGFCTTPAVAVSRVIGRR  162 (263)
T ss_dssp             HHHHHHHHHHHHHH-HHHHTCSSCEEEEESSEEETHHHHHHHHSSEEEECTTCEEECCTTTTTSCCHHHHHHHHTTSCHH
T ss_pred             HHHHHHHHHHHHHH-HHHHhCCCCEEEEECCEEEHHHHHHHHHCCEEEecCCCEEeCchhccCCCCccHHHHHHHHcCHH
Confidence             1112223344555 6799999999999999999999999999999999999999999999999976  99999999999


Q ss_pred             HHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004972          155 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  234 (721)
Q Consensus       155 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (721)
                      +|++|++||++++|+||+++||||+|||++++++++.++|+++++.+|.+                              
T Consensus       163 ~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a------------------------------  212 (263)
T 3l3s_A          163 AVTEMALTGATYDADWALAAGLINRILPEAALATHVADLAGALAARNQAP------------------------------  212 (263)
T ss_dssp             HHHHHHHHCCEEEHHHHHHHTSSSEECCHHHHHHHHHHHHHHHHSSCHHH------------------------------
T ss_pred             HHHHHHHcCCCCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHhCCHHH------------------------------
Confidence            99999999999999999999999999999999999999999999988643                              


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 004972          235 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQ  286 (721)
Q Consensus       235 ~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~  286 (721)
                            ...+|++++.....+++++++.|.+.+..++.|+|++|++++|.+.
T Consensus       213 ------~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~Eg~~Af~~~  258 (263)
T 3l3s_A          213 ------LRRGLETLNRHLELPLEQAYALATPVMVEHFMDPGRRHLDWIDEGH  258 (263)
T ss_dssp             ------HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHC--------------
T ss_pred             ------HHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcc
Confidence                  3456788999888999999999999999999999999999999864

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A

Probab=100.00  E-value=1.9e-48  Score=401.48  Aligned_cols=248  Identities=22%  Similarity=0.316  Sum_probs=209.4

Q ss_pred             EEEEEe-cCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC-CCCCcCCCCchhhhhccCCCcccccc
Q 004972            6 VTMEVG-NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-GGRFSGGFDINVFQKVHGAGDVSLMP   83 (721)
Q Consensus         6 v~~~~~-~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~-g~~F~aG~Dl~~~~~~~~~~~~~~~~   83 (721)
                      +++..+ +++|++||||||+.|++|.+|+++|.+++++++.|+++++|||||. |++||+|+|++++.... ......+.
T Consensus         5 v~v~~~~~~~v~~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~-~~~~~~~~   83 (260)
T 1sg4_A            5 VLVEPDAGAGVAVMKFKNPPVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRS-PAHYAGYW   83 (260)
T ss_dssp             EEEEEETTTTEEEEEECCTTTTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCC-HHHHHHHH
T ss_pred             EEEEEEecCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCceEcCcCHHHHhccC-HHHHHHHH
Confidence            444443 6889999999998899999999999999999999999999999999 78999999999875321 11111222


Q ss_pred             hHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEee--CCceEeCcccccCcccc---ccccccccCHHHHHH
Q 004972           84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA--PKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIE  158 (721)
Q Consensus        84 ~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~--~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~  158 (721)
                      ...+.++ ..+.++||||||+|||+|+|||++|+++||+||++  ++++|++||+++|++|+   +++|++++|..+|++
T Consensus        84 ~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~  162 (260)
T 1sg4_A           84 KAVQELW-LRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAER  162 (260)
T ss_dssp             HHHHHHH-HHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHH-HHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEEecCCCCEEeCchhhhCCCCchhHHHHHHHHhCHHHHHH
Confidence            2344556 67899999999999999999999999999999999  89999999999999997   899999999999999


Q ss_pred             HHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCC
Q 004972          159 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM  238 (721)
Q Consensus       159 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (721)
                      |++||++++|+||+++||||+|+|++++++++.++++++++.+|..+                                 
T Consensus       163 llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~---------------------------------  209 (260)
T 1sg4_A          163 ALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALSAIAQWMAIPDHAR---------------------------------  209 (260)
T ss_dssp             HHHHTCCBCHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHH---------------------------------
T ss_pred             HHHcCCcCCHHHHHHcCCCCEecCHHHHHHHHHHHHHHHHhCCHHHH---------------------------------
Confidence            99999999999999999999999999999999999999999876432                                 


Q ss_pred             hhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          239 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       239 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                         ..+|++++.....+++++++.|.+.+..++.|+|+++++++|++||+++|
T Consensus       210 ---~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~~~~  259 (260)
T 1sg4_A          210 ---QLTKAMMRKATASRLVTQRDADVQNFVSFISKDSIQKSLQMYLERLKEEK  259 (260)
T ss_dssp             ---HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSHHHHHHHTC---------
T ss_pred             ---HHHHHHHHHhhhccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcccC
Confidence               34566777766667888899999999999999999999999999999876

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus}

Probab=100.00  E-value=2e-47  Score=396.38  Aligned_cols=250  Identities=26%  Similarity=0.351  Sum_probs=214.1

Q ss_pred             CCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCC-CCcCCCCchhhhhccCCCccc
Q 004972            3 APRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG-RFSGGFDINVFQKVHGAGDVS   80 (721)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~-~F~aG~Dl~~~~~~~~~~~~~   80 (721)
                      ++.+.++. +++|++|||||| +.|+||.+|+++|.+++++++.|+++++|||||.|+ +||+|+|++++....... ..
T Consensus        12 ~~~i~~~~-~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~-~~   89 (273)
T 2uzf_A           12 YDEIKYEF-YEGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGHGGYVG-ED   89 (273)
T ss_dssp             CSSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSEEEECCCCCC--------C-CS
T ss_pred             CceEEEEE-ECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCceecCcCcHhhhccccch-hh
Confidence            45688998 789999999999 589999999999999999999999999999999998 999999999885421111 11


Q ss_pred             cc-chHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHH
Q 004972           81 LM-PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKA  156 (721)
Q Consensus        81 ~~-~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a  156 (721)
                      .+ ......++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|++++|..+|
T Consensus        90 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A  168 (273)
T 2uzf_A           90 QIPRLNVLDLQ-RLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHKKA  168 (273)
T ss_dssp             SSCCCTHHHHH-HHHHHSSSCEEEEECEEEETHHHHHHHHSSEEEEETTCEEECCGGGTTCCCCSTTTHHHHHHHCHHHH
T ss_pred             hHHHhhHHHHH-HHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEEcCCCEEECchhhhCCCCchhHHHHHHHHhCHHHH
Confidence            11 11133555 6688999999999999999999999999999999999999999999999997   8999999999999


Q ss_pred             HHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004972          157 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  236 (721)
Q Consensus       157 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (721)
                      ++|++||++++|+||+++||||+|||++++++++.++|+++++.+|.++                               
T Consensus       169 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~-------------------------------  217 (273)
T 2uzf_A          169 REIWYLCRQYNAQEALDMGLVNTVVPLEKVEDETVQWCKEIMKHSPTAL-------------------------------  217 (273)
T ss_dssp             HHHHHTCCCEEHHHHHHHTSSSEEECGGGSHHHHHHHHHHHTTSCHHHH-------------------------------
T ss_pred             HHHHHhCCCCCHHHHHHcCCCccccCHHHHHHHHHHHHHHHHhCCHHHH-------------------------------
Confidence            9999999999999999999999999999999999999999999876432                               


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHH-HHHHHHhCCHHHHHHHHHHHHhhhhcCCC
Q 004972          237 NMPQHQACLDVIEEGIVHGGYSGVLKEA-KVFKELVMLDTSRGLVHVFFAQRATSKVP  293 (721)
Q Consensus       237 ~~~A~~~~~~~i~~~~~~~~~~~l~~E~-~~~~~~~~s~~~~~~i~aF~~~r~~~~~~  293 (721)
                           ..+|++++  ...++.++++.|. +.+..++.|+|++|++++|++||+|...+
T Consensus       218 -----~~~K~~l~--~~~~~~~~l~~e~~~~~~~~~~s~d~~egi~af~ekr~p~f~~  268 (273)
T 2uzf_A          218 -----RFLKAAMN--ADTDGLAGLQQMAGDATLLYYTTDEAKEGRDAFKEKRDPDFDQ  268 (273)
T ss_dssp             -----HHHHHHHH--HHHSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCSS
T ss_pred             -----HHHHHHHH--ccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcCCCCCCC
Confidence                 23455665  2346789999999 99999999999999999999998887543

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0

Probab=100.00  E-value=1.8e-47  Score=395.98  Aligned_cols=249  Identities=22%  Similarity=0.325  Sum_probs=214.7

Q ss_pred             CCCCcEEEE----EecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccC
Q 004972            1 MAAPRVTME----VGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG   75 (721)
Q Consensus         1 m~~~~v~~~----~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~   75 (721)
                      |+ +.+.++    . +++|++||||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++.....
T Consensus         5 m~-~~v~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~   82 (267)
T 3oc7_A            5 MD-ALVDYAGPAAT-GGPVARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGGTFCAGADLSEAGSGGS   82 (267)
T ss_dssp             CC-SSEEEECHHHH-SSSEEEEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECSSEEECCBC---------
T ss_pred             cc-cccCCCCccce-eCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCceeCCcCchhhhhccC
Confidence            45 578888    6 7899999999995 699999999999999999999999999999999999999999999862111


Q ss_pred             CCcc----cccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccc
Q 004972           76 AGDV----SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLP  148 (721)
Q Consensus        76 ~~~~----~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~  148 (721)
                      ....    ..+......++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~  161 (267)
T 3oc7_A           83 PSSAYDMAVERAREMAALM-RAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPRSSFALTEARIGVAPAIISLTLLP  161 (267)
T ss_dssp             --CHHHHHHHHHHHHHHHH-HHHHHCSSCEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTTHHHHTT
T ss_pred             chhhhhhHHHHHHHHHHHH-HHHHhCCCCEEEEEcCeecccchHHHHHCCEEEEcCCCEEeCcccccCCCcchhHHHHHH
Confidence            1111    01233444556 6789999999999999999999999999999999999999999999999997   88999


Q ss_pred             cccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHH
Q 004972          149 RLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLAR  228 (721)
Q Consensus       149 r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (721)
                       ++|..+|++|++||++++|+||+++||||+|  ++++++++.++++++++.+|.+                        
T Consensus       162 -~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~v--~~~l~~~a~~~a~~la~~~~~a------------------------  214 (267)
T 3oc7_A          162 -KLSARAAARYYLTGEKFDARRAEEIGLITMA--AEDLDAAIDQLVTDVGRGSPQG------------------------  214 (267)
T ss_dssp             -TSCHHHHHHHHHHCCCBCHHHHHHHTSSSEE--CSSHHHHHHHHHHHHHTSCHHH------------------------
T ss_pred             -HhCHHHHHHHHHcCCccCHHHHHHCCChhhh--hHHHHHHHHHHHHHHHhCCHHH------------------------
Confidence             9999999999999999999999999999999  7889999999999999988643                        


Q ss_pred             HHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          229 LQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       229 ~~~~~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                                  ...+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|++
T Consensus       215 ------------~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f  265 (267)
T 3oc7_A          215 ------------LAASKALTTAAVLERFDRDAERLAEESARLFVSDEAREGMLAFLEKRSPNW  265 (267)
T ss_dssp             ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHTCCCTT
T ss_pred             ------------HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCC
Confidence                        335677788877788999999999999999999999999999999998775

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A

Probab=100.00  E-value=1.3e-47  Score=399.70  Aligned_cols=254  Identities=24%  Similarity=0.346  Sum_probs=212.5

Q ss_pred             CCCCcEEEEEec-CcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcCCCCchhhhhccCC-
Q 004972            1 MAAPRVTMEVGN-DGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGA-   76 (721)
Q Consensus         1 m~~~~v~~~~~~-~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~-   76 (721)
                      |.+++|.++. + ++|++||||||+ .|+||.+|+.+|.+++++++.|+++|+|||||.| ++||+|+|++++...... 
T Consensus        24 ~~~~~v~~~~-~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~  102 (289)
T 3t89_A           24 EGFEDIRYEK-STDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYK  102 (289)
T ss_dssp             TTCSSEEEEE-ETTSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCCC---------
T ss_pred             CCCCeEEEEE-ecCCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCCccCCCChhhhhccccch
Confidence            3567899999 6 899999999996 6999999999999999999999999999999999 499999999988542211 


Q ss_pred             CcccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCH
Q 004972           77 GDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGL  153 (721)
Q Consensus        77 ~~~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~  153 (721)
                      ............++ +.+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+   +++|+|++|.
T Consensus       103 ~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~~~~~g~~~L~r~vG~  181 (289)
T 3t89_A          103 DDSGVHHLNVLDFQ-RQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQ  181 (289)
T ss_dssp             -------CTHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHHHCH
T ss_pred             hhhHHHHHHHHHHH-HHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEeCCCEEeccccccCCCCCchHHHHHHHhcCH
Confidence            11111112234555 6799999999999999999999999999999999999999999999997664   8999999999


Q ss_pred             HHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHH
Q 004972          154 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK  233 (721)
Q Consensus       154 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (721)
                      .+|++|++||++++|+||+++||||+|||++++++++.++|++|++.+|.++                            
T Consensus       182 ~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~A~~la~~~~~a~----------------------------  233 (289)
T 3t89_A          182 KKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWCREMLQNSPMAL----------------------------  233 (289)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHH----------------------------
T ss_pred             HHHHHHHHcCCcccHHHHHHCCCceEeeCHHHHHHHHHHHHHHHHcCCHHHH----------------------------
Confidence            9999999999999999999999999999999999999999999999886432                            


Q ss_pred             hCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCC
Q 004972          234 TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  293 (721)
Q Consensus       234 ~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~  293 (721)
                              ..+|++++.... ......+.|.+.+..++.|+|++|++++|++||+|...+
T Consensus       234 --------~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~s~d~~Eg~~AF~ekR~P~f~~  284 (289)
T 3t89_A          234 --------RCLKAALNADCD-GQAGLQELAGNATMLFYMTEEGQEGRNAFNQKRQPDFSK  284 (289)
T ss_dssp             --------HHHHHHHHHTTS-HHHHHHHHHHHHHHHHTTSSTTTHHHHHHHTTSCCCCTT
T ss_pred             --------HHHHHHHHhhcc-cchHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCCC
Confidence                    345666766543 233444578888889999999999999999999987643

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3

Probab=100.00  E-value=1.4e-47  Score=393.86  Aligned_cols=246  Identities=24%  Similarity=0.352  Sum_probs=217.7

Q ss_pred             EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhcc--CCCccccc
Q 004972            6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVH--GAGDVSLM   82 (721)
Q Consensus         6 v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~--~~~~~~~~   82 (721)
                      +.++  +++|++||||||+ .|++|.+|+++|.++++.++.|+++++|||||.|++||+|+|++++....  ........
T Consensus         2 i~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   79 (253)
T 1uiy_A            2 VQVE--KGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEENYRH   79 (253)
T ss_dssp             EEEE--CSSEEEEEECCGGGTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHTTSCHHHHHHH
T ss_pred             EEEE--eCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcChHHHHhcccCCchhHHHH
Confidence            4566  5789999999995 79999999999999999999999999999999999999999999986531  11000000


Q ss_pred             chHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc--ccccccccCHHHHHHHH
Q 004972           83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG--TQRLPRLVGLSKAIEMM  160 (721)
Q Consensus        83 ~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~--~~~l~r~~G~~~a~~l~  160 (721)
                      ....++++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+  +++|+|++|..+|++|+
T Consensus        80 ~~~~~~~~-~~i~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~l~r~vG~~~a~~l~  158 (253)
T 1uiy_A           80 SLSLMRLF-HRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAALVSVILVRAVGEKAAKDLL  158 (253)
T ss_dssp             HHHHHHHH-HHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCHHHHHHHHHHSCHHHHHHHH
T ss_pred             HHHHHHHH-HHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEcCCcEEeCcccccCcCCchHHHHHHHHhCHHHHHHHH
Confidence            01134555 6689999999999999999999999999999999999999999999999998  78999999999999999


Q ss_pred             HcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChh
Q 004972          161 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQ  240 (721)
Q Consensus       161 ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A  240 (721)
                      +||++++|+||+++||||+|+|++++++++.++++++++.+|..                                    
T Consensus       159 ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a------------------------------------  202 (253)
T 1uiy_A          159 LTGRLVEAREAKALGLVNRIAPPGKALEEAKALAEEVAKNAPTS------------------------------------  202 (253)
T ss_dssp             HHCCEEEHHHHHHHTSCSEEECTTCHHHHHHHHHHHHHHSCHHH------------------------------------
T ss_pred             HhCCccCHHHHHHCCCcceecChhHHHHHHHHHHHHHHcCCHHH------------------------------------
Confidence            99999999999999999999999999999999999999987642                                    


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhc
Q 004972          241 HQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS  290 (721)
Q Consensus       241 ~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~  290 (721)
                      ...+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|.
T Consensus       203 ~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~~kr~p~  252 (253)
T 1uiy_A          203 LRLTKELLLALPGMGLEDGFRLAALANAWVRETGDLAEGIRAFFEKRPPR  252 (253)
T ss_dssp             HHHHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHTTSCCC
T ss_pred             HHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCcCCCC
Confidence            33567888888888999999999999999999999999999999998765

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*

Probab=100.00  E-value=6.5e-48  Score=395.55  Aligned_cols=244  Identities=24%  Similarity=0.305  Sum_probs=197.0

Q ss_pred             EEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEe-CCCCCcCCCCchhhhhccCCCcccccc
Q 004972            6 VTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTG-NGGRFSGGFDINVFQKVHGAGDVSLMP   83 (721)
Q Consensus         6 v~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg-~g~~F~aG~Dl~~~~~~~~~~~~~~~~   83 (721)
                      +.++. +++|++|||||| +.|++|.+|+++|.+++++++.|+++|+||||| .|++||+|+|++++...........+.
T Consensus         2 v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~~~~~~~~~   80 (250)
T 2a7k_A            2 VFEEN-SDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWI   80 (250)
T ss_dssp             EEEEE-ETTEEEEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHH
T ss_pred             eEEEe-eCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCCccCCcCHHHHhhcCchhhHHHHH
Confidence            67788 789999999999 579999999999999999999999999999999 999999999999986432111001122


Q ss_pred             hHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHHHH
Q 004972           84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMM  160 (721)
Q Consensus        84 ~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~l~  160 (721)
                      ...++++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   + +|+|++|..+|++|+
T Consensus        81 ~~~~~~~-~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vG~~~a~~l~  158 (250)
T 2a7k_A           81 DRVIDLY-QAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGAA-ILGFTHGFSTMQEII  158 (250)
T ss_dssp             HHHHHHH-HHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHHH-HHHHHHCHHHHHHHH
T ss_pred             HHHHHHH-HHHHcCCCCEEEEECCeEeHHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCcHHH-HHHHHhHHHHHHHHH
Confidence            2344555 6789999999999999999999999999999999999999999999999997   7 999999999999999


Q ss_pred             HcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChh
Q 004972          161 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQ  240 (721)
Q Consensus       161 ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A  240 (721)
                      +||++++|+||+++||||+|+|++++++++.++++++++.+|..                                    
T Consensus       159 ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a------------------------------------  202 (250)
T 2a7k_A          159 YQCQSLDAPRCVDYRLVNQVVESSALLDAAITQAHVMASYPASA------------------------------------  202 (250)
T ss_dssp             HHCCCBCHHHHHHHTCCSEEECHHHHHHHHHHHHHHHHTSCHHH------------------------------------
T ss_pred             HcCCcccHHHHHHcCCcceecCHHHHHHHHHHHHHHHHcCCHHH------------------------------------
Confidence            99999999999999999999999999999999999999987642                                    


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhh
Q 004972          241 HQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA  288 (721)
Q Consensus       241 ~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~  288 (721)
                      ...+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+
T Consensus       203 ~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~  250 (250)
T 2a7k_A          203 FINTKRAVNKPFIHLLEQTRDASKAVHKAAFQARDAQGHFKNVLGKKY  250 (250)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------------
T ss_pred             HHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Confidence            234567777777777899999999999999999999999999999874

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C*

Probab=100.00  E-value=1.3e-47  Score=398.49  Aligned_cols=248  Identities=19%  Similarity=0.300  Sum_probs=201.4

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccC--CCc-
Q 004972            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG--AGD-   78 (721)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~--~~~-   78 (721)
                      ++.+.++. +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.....  ... 
T Consensus         8 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~   86 (276)
T 2j5i_A            8 WKTVKVEI-EDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFREVDAGPEIL   86 (276)
T ss_dssp             CSSEEEEE-ETEEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTEEEEEEEESTTCSBCCBCHHHHHHHHHHSCTTH
T ss_pred             CceEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCcCCcChhhHhhccccchhHH
Confidence            46788998 7899999999994 799999999999999999999999999999999999999999998753211  110 


Q ss_pred             ccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHH
Q 004972           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSK  155 (721)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~  155 (721)
                      ...+.......+...+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|+|++|..+
T Consensus        87 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~  166 (276)
T 2j5i_A           87 QEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQ  166 (276)
T ss_dssp             HHHHHHHHHHHHTTTTTTCSSCEEEEECSCEEGGGHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHhCHHH
Confidence            01111111222125578999999999999999999999999999999999999999999999997   899999999999


Q ss_pred             HHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004972          156 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  235 (721)
Q Consensus       156 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (721)
                      |++|++||++++|+||+++||||+|||++++++++.++++++++.+|.+                               
T Consensus       167 A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a-------------------------------  215 (276)
T 2j5i_A          167 SLMYIMTGKTFGGQKAAEMGLVNESVPLAQLREVTIELARNLLEKNPVV-------------------------------  215 (276)
T ss_dssp             HHHHHHHCCEEEHHHHHHHTSSSEEECHHHHHHHHHHHHHHHHTSCHHH-------------------------------
T ss_pred             HHHHHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCCHHH-------------------------------
Confidence            9999999999999999999999999999999999999999999988643                               


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH--hCCH-HHHHHHHHHHHhh
Q 004972          236 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKEL--VMLD-TSRGLVHVFFAQR  287 (721)
Q Consensus       236 ~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~--~~s~-~~~~~i~aF~~~r  287 (721)
                           ...+|++++.+...+++++++.|.+.+..+  +.|+ |++|++++|++||
T Consensus       216 -----~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~s~~d~~eg~~AF~ekr  265 (276)
T 2j5i_A          216 -----LRAAKHGFKRCRELTWEQNEDYLYAKLDQSRLLDTEGGREQGMKQFLDDK  265 (276)
T ss_dssp             -----HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHC----------------
T ss_pred             -----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcc
Confidence                 335678888888888999999998887776  6799 9999999999998

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}

Probab=100.00  E-value=3.7e-48  Score=398.82  Aligned_cols=243  Identities=24%  Similarity=0.307  Sum_probs=188.3

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccc
Q 004972            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL   81 (721)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   81 (721)
                      ++.|.++. +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|+.||+|+|++++....... ...
T Consensus        11 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-~~~   88 (258)
T 3lao_A           11 PGRVTREQ-RGHLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLFAHGEHFTAGLDLMELAPKLAAS-GFR   88 (258)
T ss_dssp             SCCEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHGGGCBTT-BCC
T ss_pred             CCeEEEEE-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCeecCcCHHHHhhccchh-hHH
Confidence            56799999 7999999999995 69999999999999999999999999999999999999999999987643222 111


Q ss_pred             cchHHHHHHHHHH-hhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHH
Q 004972           82 MPDVSVELVVNLI-EDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAI  157 (721)
Q Consensus        82 ~~~~~~~~~~~~l-~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~  157 (721)
                      +.....+.+ ..+ .++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|+|++|..+|+
T Consensus        89 ~~~~~~~~~-~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~  167 (258)
T 3lao_A           89 YPDGGVDPW-GVVQPRRSKPLVVAVQGTCWTAGIELMLNADIAVAARGTRFAHLEVLRGIPPLGGSTVRFPRAAGWTDAM  167 (258)
T ss_dssp             CCTTCCCTT-SCSSSCCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGTCCCSSCCCCSHHHHHHCHHHHH
T ss_pred             HHHHHHHHH-HHHHHhCCCCEEEEECCEeEhHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHH
Confidence            222222334 457 8999999999999999999999999999999999999999999999996   89999999999999


Q ss_pred             HHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCC
Q 004972          158 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN  237 (721)
Q Consensus       158 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (721)
                      +|++||++++|+||+++||||+|+|++++++++.++|+++++.+|.+                                 
T Consensus       168 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a---------------------------------  214 (258)
T 3lao_A          168 RYILTGDEFDADEALRMRLLTEVVEPGEELARALEYAERIARAAPLA---------------------------------  214 (258)
T ss_dssp             HHHTTCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHHSCHHH---------------------------------
T ss_pred             HHHHcCCCCCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhCCHHH---------------------------------
Confidence            99999999999999999999999999999999999999999988643                                 


Q ss_pred             ChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004972          238 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFF  284 (721)
Q Consensus       238 ~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~  284 (721)
                         ...+|++++.....+++++++.|.+.+..++.|+|++|++++|+
T Consensus       215 ---~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~AF~  258 (258)
T 3lao_A          215 ---VRAALQSAFQGRDEGDDAALSRVNESLAALIGSEDVREGVLAMV  258 (258)
T ss_dssp             ---HHHHHHHHHHHTC-------------------------------
T ss_pred             ---HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHhhC
Confidence               34567888888888999999999999999999999999999995

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3

Probab=100.00  E-value=9.1e-48  Score=401.32  Aligned_cols=253  Identities=21%  Similarity=0.296  Sum_probs=213.7

Q ss_pred             CCCcEEEEEecCcEEEEEeC-CC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCC--
Q 004972            2 AAPRVTMEVGNDGVAIITLI-NP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG--   77 (721)
Q Consensus         2 ~~~~v~~~~~~~~v~~i~l~-~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~--   77 (721)
                      .++.|.++. +++|++|||| || +.|+||.+|+.+|.+++++++.|+. ++|||||.|+.||+|+|++++.......  
T Consensus        21 ~~~~v~~~~-~~~v~~itln~rp~~~Nal~~~m~~~L~~al~~~~~d~~-r~vVltg~G~~FcaG~Dl~~~~~~~~~~~~   98 (291)
T 2fbm_A           21 TYRDIVVKK-EDGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADDS-KLVLFSAAGSVFCCGLDFGYFVKHLRNNRN   98 (291)
T ss_dssp             CCSSEEEEE-CSSEEEEEECCSSSSTTCBCHHHHHHHHHHHHHHHHSSC-SEEEEEECSSCSBCCBCHHHHHHHHHHCHH
T ss_pred             CcceEEEEE-eCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCC-eEEEEECCCCCccCCcCHHHHHhcccccch
Confidence            356789999 7899999999 68 5799999999999999999998875 9999999999999999999985421111  


Q ss_pred             -cccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCH
Q 004972           78 -DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGL  153 (721)
Q Consensus        78 -~~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~  153 (721)
                       ....+......++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+   +++|+|++|.
T Consensus        99 ~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~  177 (291)
T 2fbm_A           99 TASLEMVDTIKNFV-NTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGK  177 (291)
T ss_dssp             HHHHHHHHHHHHHH-HHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCH
T ss_pred             hHHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEECcHHhcCCCCcccHHHHHHHHHhH
Confidence             0111222334555 6689999999999999999999999999999999999999999999999997   8999999999


Q ss_pred             HHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHH
Q 004972          154 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK  233 (721)
Q Consensus       154 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (721)
                      .+|++|++||++++|+||+++||||+|||++++.+++.++|++|++.+|.+                             
T Consensus       178 ~~A~el~ltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~a-----------------------------  228 (291)
T 2fbm_A          178 ASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKELASYNPIV-----------------------------  228 (291)
T ss_dssp             HHHHHHHTSCCEEEHHHHHHTTSCSEEECSTTSHHHHHHHHHHHTTSCHHH-----------------------------
T ss_pred             HHHHHHHHcCCccCHHHHHHCCCcceecChhHHHHHHHHHHHHHHhCCHHH-----------------------------
Confidence            999999999999999999999999999999999999999999999987643                             


Q ss_pred             hCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHH-HHhhhhcCCC
Q 004972          234 TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVF-FAQRATSKVP  293 (721)
Q Consensus       234 ~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF-~~~r~~~~~~  293 (721)
                             ...+|++++.....+++++++.|.+.+..++.|+|++|++.+| ++||+|...+
T Consensus       229 -------~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~Af~~ekR~P~f~~  282 (291)
T 2fbm_A          229 -------LEECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKIPLLGYKAAFPP  282 (291)
T ss_dssp             -------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHTSHHHHHHHHTC-----------
T ss_pred             -------HHHHHHHHHhhhccCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCCC
Confidence                   2355777877777778999999999999999999999999999 9999987543

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A

Probab=100.00  E-value=1.1e-47  Score=396.23  Aligned_cols=249  Identities=20%  Similarity=0.282  Sum_probs=219.0

Q ss_pred             CCcEEEEEecCcEEEEEeC-CC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCC---
Q 004972            3 APRVTMEVGNDGVAIITLI-NP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG---   77 (721)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~-~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~---   77 (721)
                      ++++.++. +++|++|||| || +.|++|.+|+.+|.+++++++.|+ +++|||||.|++||+|+|++++.......   
T Consensus         4 ~~~i~~~~-~~~v~~itln~rp~~~Nal~~~~~~~L~~al~~~~~d~-~r~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~   81 (261)
T 2gtr_A            4 YRDIVVRK-QDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADD-SKLVLLSAVGSVFCCGLDFIYFIRRLTDDRKR   81 (261)
T ss_dssp             CSSEEEEE-ETTEEEEEECCSSSSTTEECHHHHHHHHHHHHHHHHSS-CSCEEEEESSSCSBCEECHHHHHHHHHHCHHH
T ss_pred             cceEEEEE-eCCEEEEEECCCCccCCCCCHHHHHHHHHHHHHHhcCC-CEEEEEecCCCccccccCchhhhhccccchhh
Confidence            56789998 7899999999 58 579999999999999999999887 49999999999999999999885421111   


Q ss_pred             cccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHH
Q 004972           78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLS  154 (721)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~  154 (721)
                      ....+....+.++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|++++|..
T Consensus        82 ~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~  160 (261)
T 2gtr_A           82 ESTKMAEAIRNFV-NTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGA  160 (261)
T ss_dssp             HHHHHHHHHHHHH-HHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCTTTTTCCCCTTHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHH-HHHHhCCCCEEEEECCeEeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCccchHHHHHHHHcCHH
Confidence            0111222334555 6689999999999999999999999999999999999999999999999997   88999999999


Q ss_pred             HHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004972          155 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  234 (721)
Q Consensus       155 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (721)
                      +|++|++||++++|+||+++||||+|||++++.+++.++++++++.+|..                              
T Consensus       161 ~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a------------------------------  210 (261)
T 2gtr_A          161 SANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVMVRIKELASCNPVV------------------------------  210 (261)
T ss_dssp             HHHHHHHHCCCEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSCHHH------------------------------
T ss_pred             HHHHHHHcCCCCCHHHHHHCCCcccccChhHHHHHHHHHHHHHHhCCHHH------------------------------
Confidence            99999999999999999999999999999999999999999999987643                              


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhc
Q 004972          235 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS  290 (721)
Q Consensus       235 ~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~  290 (721)
                            ...+|++++.....+++++++.|.+.+..++.|+|++|++.+|++||+|.
T Consensus       211 ------~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~P~  260 (261)
T 2gtr_A          211 ------LEESKALVRCNMKMELEQANERECEVLKKIWGSAQGMDSMLKYLQRKIDE  260 (261)
T ss_dssp             ------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHC
T ss_pred             ------HHHHHHHHHhccccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCCC
Confidence                  23556778777777789999999999999999999999999999999886

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A*

Probab=100.00  E-value=2.3e-47  Score=393.35  Aligned_cols=250  Identities=32%  Similarity=0.417  Sum_probs=219.6

Q ss_pred             CCCcEEEEEe--cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCc
Q 004972            2 AAPRVTMEVG--NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD   78 (721)
Q Consensus         2 ~~~~v~~~~~--~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~   78 (721)
                      +++.+.++..  .++|++||||||+ .|++|.+|+++|.+++++++.|+++++|||||.|++||+|+|++++....... 
T Consensus         2 ~~~~~~~~~~v~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-   80 (260)
T 1mj3_A            2 NFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQD-   80 (260)
T ss_dssp             CCSSEEEEEESGGGCEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEECCBCHHHHTTCCHHH-
T ss_pred             CcccceeecccCcCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCccCCcChHhhhcccchH-
Confidence            3567777762  5789999999995 79999999999999999999999999999999999999999999875321100 


Q ss_pred             ccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHH
Q 004972           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSK  155 (721)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~  155 (721)
                        .....+...+ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|+|++|..+
T Consensus        81 --~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~  157 (260)
T 1mj3_A           81 --CYSGKFLSHW-DHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSL  157 (260)
T ss_dssp             --HHHC--CCGG-GGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHHCHHH
T ss_pred             --HHHHHHHHHH-HHHHhCCCCEEEEECCEEEeHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHhCHHH
Confidence              0000011123 4578999999999999999999999999999999999999999999999997   889999999999


Q ss_pred             HHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004972          156 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  235 (721)
Q Consensus       156 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (721)
                      |++|++||++++|+||+++||||+|+|++++++++.++++++++.+|.                                
T Consensus       158 a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~--------------------------------  205 (260)
T 1mj3_A          158 AMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSKI--------------------------------  205 (260)
T ss_dssp             HHHHHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHHHHHHHSCHH--------------------------------
T ss_pred             HHHHHHcCCcCCHHHHHHcCCccEEeChHHHHHHHHHHHHHHHcCCHH--------------------------------
Confidence            999999999999999999999999999999999999999999998864                                


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          236 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       236 ~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                          |...+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|.+
T Consensus       206 ----a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~~kr~p~~  257 (260)
T 1mj3_A          206 ----IVAMAKESVNAAFEMTLTEGNKLEKKLFYSTFATDDRREGMSAFVEKRKANF  257 (260)
T ss_dssp             ----HHHHHHHHHHGGGSSCHHHHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCCC
T ss_pred             ----HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCC
Confidence                2335678888888889999999999999999999999999999999988764

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A

Probab=100.00  E-value=1.3e-47  Score=405.80  Aligned_cols=253  Identities=23%  Similarity=0.274  Sum_probs=183.6

Q ss_pred             CCcEEEEEe-cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCC-------CCcCCCCchhhhhc
Q 004972            3 APRVTMEVG-NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG-------RFSGGFDINVFQKV   73 (721)
Q Consensus         3 ~~~v~~~~~-~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~-------~F~aG~Dl~~~~~~   73 (721)
                      ++.|+++++ +++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.|+       .||+|+|++++...
T Consensus        54 ~~~i~~~~~~~~gVa~ItlnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvVVltG~G~~~~~~~~~FcaG~Dl~~~~~~  133 (334)
T 3t8b_A           54 LTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRS  133 (334)
T ss_dssp             CSSEEEEEESSSSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCSCTTTTC--
T ss_pred             CceEEEEEeccCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCcCCCCCcccCCCCHHHhhcc
Confidence            567999983 4899999999996 69999999999999999999999999999999996       89999999987432


Q ss_pred             cCC----------CcccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEee-CCceEeCcccccCccc
Q 004972           74 HGA----------GDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA-PKTQLGLPELTLGVIP  142 (721)
Q Consensus        74 ~~~----------~~~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~-~~a~~~~pe~~~Gl~P  142 (721)
                      ...          ............++ +.|.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~kPvIAaV~G~A~GgG~~LalacD~riAs~~~A~f~~pe~~lGl~p  212 (334)
T 3t8b_A          134 GYQYASGDTADTVDVARAGRLHILEVQ-RLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFD  212 (334)
T ss_dssp             --------------------CCHHHHH-HHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCCTTCSSSS
T ss_pred             cccccccccchhhhHHHHHHHHHHHHH-HHHHhCCCCEEEEECCccccCcchhHhhCCEEEEeCCCcEEECcccccCCCC
Confidence            110          00011111233455 67899999999999999999999999999999999 9999999999999999


Q ss_pred             c---ccccccccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHH
Q 004972          143 G---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSE  219 (721)
Q Consensus       143 ~---~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~  219 (721)
                      +   +++|+|++|..+|++|++||++++|+||+++||||+|||++++++++.++|++|++.+|.+               
T Consensus       213 ~~gg~~~L~r~vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~A~~ia~~~p~a---------------  277 (334)
T 3t8b_A          213 GGYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAEHAELETVGLQWAAEINAKSPQA---------------  277 (334)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHH---------------
T ss_pred             cccHHHHHHHHhhHHHHHHHHHhCCcCCHHHHHHCCCCcEecCHHHHHHHHHHHHHHHHhCCHHH---------------
Confidence            7   8999999999999999999999999999999999999999999999999999999988753               


Q ss_pred             HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCC
Q 004972          220 AREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  293 (721)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~  293 (721)
                                           ...+|++++.... .+...+..|.+.+..++.|+|++|++.+|++||+|...+
T Consensus       278 ---------------------~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~s~d~~Eg~~AFleKR~P~f~~  329 (334)
T 3t8b_A          278 ---------------------QRMLKFAFNLLDD-GLVGQQLFAGEATRLAYMTDEAVEGRDAFLQKRPPDWSP  329 (334)
T ss_dssp             ---------------------HHHHHHHHHHTCC-CC-------------------------------------
T ss_pred             ---------------------HHHHHHHHHhhhc-chHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCCC
Confidence                                 2345667776543 455566788888899999999999999999999987643

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis}

Probab=100.00  E-value=3.4e-47  Score=396.58  Aligned_cols=244  Identities=20%  Similarity=0.276  Sum_probs=218.3

Q ss_pred             CCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CcCCCCchhhhhccCCCc--c
Q 004972            3 APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVFQKVHGAGD--V   79 (721)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~-F~aG~Dl~~~~~~~~~~~--~   79 (721)
                      ++.|.++. +++|++||||||+.|+||.+|+.+|.++++.++.|+++|+|||||.|+. ||+|+|++++........  .
T Consensus         7 ~~~v~~~~-~~~Va~itlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~ff~~G~Dl~~~~~~~~~~~~~~   85 (289)
T 3h0u_A            7 YETIKARL-DGTVLSATFNAPPMNLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKVPEYTAEAAKAG   85 (289)
T ss_dssp             CSSEEEEE-ETTEEEEEECCTTTCCBCHHHHHHHHHHHHHTTSTTSCSEEEEEECSSSEEECSBCTTCHHHHHHHHHTTS
T ss_pred             CCeEEEEE-ECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCceeCCcCHHHHhhcCcchhhhH
Confidence            67899999 7999999999999999999999999999999999999999999999865 556779998865321110  0


Q ss_pred             cccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCC-ceEeCcccccCcccc---ccccccccCHHH
Q 004972           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPG---TQRLPRLVGLSK  155 (721)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~-a~~~~pe~~~Gl~P~---~~~l~r~~G~~~  155 (721)
                      ..+.....+++ .++.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|+   +++|+|++|..+
T Consensus        86 ~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~  164 (289)
T 3h0u_A           86 GPGDASLGMLF-RKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRENAILGQPEVGIGAPPGAGAIQHLTRLLGRGR  164 (289)
T ss_dssp             STTCCSHHHHH-HHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECTHHHHTSCCCSSHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHH-HHHHhCCCCEEEEECCEeehhhHHHHHhCCEEEEeCCCcEEeCchhhcCCCCCccHHHHHHHHhCHHH
Confidence            12233455666 6799999999999999999999999999999999998 999999999999997   899999999999


Q ss_pred             HHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004972          156 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  235 (721)
Q Consensus       156 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (721)
                      |++|++||++++|+||+++||||+|||++++++++.++|++|++.+|.+                               
T Consensus       165 A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~p~a-------------------------------  213 (289)
T 3h0u_A          165 ALEAVLTSSDFDADLAERYGWVNRAVPDAELDEFVAGIAARMSGFPRDA-------------------------------  213 (289)
T ss_dssp             HHHHHHHCCCEEHHHHHHHTSSSEEECHHHHHHHHHHHHHHHHTSCHHH-------------------------------
T ss_pred             HHHHHHcCCCCCHHHHHHCCCccEecCHHHHHHHHHHHHHHHHhCCHHH-------------------------------
Confidence            9999999999999999999999999999999999999999999988643                               


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 004972          236 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFA  285 (721)
Q Consensus       236 ~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~  285 (721)
                           ...+|++++.... +++++++.|.+.+..++.|+|++|++++|++
T Consensus       214 -----~~~~K~~l~~~~~-~l~~~l~~e~~~~~~~~~s~d~~egi~AFle  257 (289)
T 3h0u_A          214 -----LIAAKSAINAISL-PAPAEVRADAALFQQLVRGEKVQQRTAELFK  257 (289)
T ss_dssp             -----HHHHHHHHHHHHS-CCHHHHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHhhcc-cHHHHHHHHHHHHHHHhCCHHHHHHHHHHhC
Confidence                 3356778888777 8999999999999999999999999999999

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis}

Probab=100.00  E-value=1.8e-47  Score=392.56  Aligned_cols=242  Identities=19%  Similarity=0.299  Sum_probs=204.6

Q ss_pred             cEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccc
Q 004972            5 RVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMP   83 (721)
Q Consensus         5 ~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~   83 (721)
                      .|.++. +++|++||||||+ .|++|.+|+++|.++++.+++ +++|+|||||.|++||+|+|++++....... .....
T Consensus         8 ~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~-~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-~~~~~   84 (254)
T 3isa_A            8 PLAIER-RPAAWTFTLSRPEKRNALSAELVEALIDGVDAAHR-EQVPLLVFAGAGRNFSAGFDFTDYETQSEGD-LLLRM   84 (254)
T ss_dssp             SEEEEE-CSSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHH-TTCSEEEEEESTTCSCCCBCCTTCTTSCHHH-HHHHH
T ss_pred             eEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEECCCCceeeCcChHHhhccCchh-HHHHH
Confidence            388999 8999999999995 899999999999999999986 5899999999999999999999986432111 11111


Q ss_pred             hHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCccccccccccccCHHHHHHHHHcC
Q 004972           84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGTQRLPRLVGLSKAIEMMLLS  163 (721)
Q Consensus        84 ~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~~~~l~r~~G~~~a~~l~ltg  163 (721)
                      ...+.++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++++|+|++|..+|++|++||
T Consensus        85 ~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~pg~~~l~~~vG~~~A~~l~ltg  163 (254)
T 3isa_A           85 VRIEMLL-QRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRMPGLKFGLVLGTRRFRDIVGADQALSILGSA  163 (254)
T ss_dssp             HHHHHHH-HHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCCSHHHHHHHHCHHHHHHHHTTT
T ss_pred             HHHHHHH-HHHHhCCCCEEEEECCeEeecchhHHHhCCEEEEcCCCEEECchhccCccHHHHHHHHHcCHHHHHHHHHhC
Confidence            2234555 679999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChhHHH
Q 004972          164 KSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQA  243 (721)
Q Consensus       164 ~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~  243 (721)
                      ++++|+||+++||||+|||++++.+++.++++++++.++.+++                                    .
T Consensus       164 ~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------------~  207 (254)
T 3isa_A          164 RAFDADEARRIGFVRDCAAQAQWPALIDAAAEAATALDPATRA------------------------------------T  207 (254)
T ss_dssp             CEEEHHHHHHTTSSSEECCGGGHHHHHHHHHHHHTTSCHHHHH------------------------------------H
T ss_pred             CCCcHHHHHHCCCccEEeChhHHHHHHHHHHHHHHcCCHHHHH------------------------------------H
Confidence            9999999999999999999999999999999999998864322                                    3


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCC
Q 004972          244 CLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  293 (721)
Q Consensus       244 ~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~  293 (721)
                      +|+++.       .+.++.|.+.+..++.|+|++|++.+|++||++.+.+
T Consensus       208 ~K~~l~-------~~~~~~e~~~~~~~~~s~d~~egi~af~ekr~p~~~~  250 (254)
T 3isa_A          208 LHRVLR-------DDHDDADLAALARSAAQPGFKARIRDYLAQPAAEGHH  250 (254)
T ss_dssp             HHHHHS-------CCCHHHHHHHHHHHHHSTTHHHHHHHHHHC-------
T ss_pred             HHHHHh-------hhhHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCC
Confidence            344442       1234678888999999999999999999999999865

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A

Probab=100.00  E-value=1.1e-47  Score=393.77  Aligned_cols=241  Identities=24%  Similarity=0.367  Sum_probs=197.0

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccc
Q 004972            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL   81 (721)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   81 (721)
                      ++.+.++. +++|++||||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++....       
T Consensus         8 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vvltg~g~~F~aG~Dl~~~~~~~-------   79 (256)
T 3pe8_A            8 SPVLLVDT-TDRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGADPVFCAGLDLKELGDTT-------   79 (256)
T ss_dssp             CCSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEESTTCSBCCBCTTTC-----------
T ss_pred             CCcEEEEE-ECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhhhH-------
Confidence            56799999 7999999999995 69999999999999999999999999999999999999999999885421       


Q ss_pred             cchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHH
Q 004972           82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIE  158 (721)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~  158 (721)
                         ...... ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|+|++|..+|++
T Consensus        80 ---~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~  155 (256)
T 3pe8_A           80 ---ELPDIS-PKWPDMTKPVIGAINGAAVTGGLELALYCDILIASENAKFADTHARVGLMPTWGLSVRLPQKVGVGLARR  155 (256)
T ss_dssp             --------C-CCCCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSSHHHHHHHHHCHHHHHH
T ss_pred             ---HHHHHH-HHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEcCCCEEECchhhhCCCCcccHHHHHHHhcCHHHHHH
Confidence               111222 4578999999999999999999999999999999999999999999999997   899999999999999


Q ss_pred             HHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCC
Q 004972          159 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM  238 (721)
Q Consensus       159 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (721)
                      |++||++++|+||+++||||+|+|++++++++.++|+++++.+|.+                                  
T Consensus       156 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a----------------------------------  201 (256)
T 3pe8_A          156 MSLTGDYLSAQDALRAGLVTEVVAHDDLLTAARRVAASIVGNNQKA----------------------------------  201 (256)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSCEECGGGHHHHHHHHHHHHHTSCHHH----------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCCeEEeCHhHHHHHHHHHHHHHHcCCHHH----------------------------------
Confidence            9999999999999999999999999999999999999999988643                                  


Q ss_pred             hhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHhhhhcC
Q 004972          239 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKEL---VMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       239 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~---~~s~~~~~~i~aF~~~r~~~~  291 (721)
                        ...+|++++.+...+++++++.|.+.+..+   ..++|+++++.+|++|+++.+
T Consensus       202 --~~~~K~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~e~~~aflek~k~~~  255 (256)
T 3pe8_A          202 --VRALLDSYHRIDALQTGGALWAEAEAARQWMRSTSGDDIAASRASVIERGRSQV  255 (256)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------
T ss_pred             --HHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCccC
Confidence              335677888888888999999999997654   677788999999999999864

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis}

Probab=100.00  E-value=6.5e-47  Score=388.61  Aligned_cols=239  Identities=26%  Similarity=0.361  Sum_probs=206.4

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccc
Q 004972            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL   81 (721)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   81 (721)
                      ++.|.++. +++|++||||||+ .|+||.+|+.+|.++++++++| ++|+|||||.|+.||+|+|++...      ....
T Consensus        20 ~~~i~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~G~~FcaG~Dl~~~~------~~~~   91 (264)
T 3he2_A           20 GSMIGITQ-AEAVLTIELQRPERRNALNSQLVEELTQAIRKAGDG-SARAIVLTGQGTAFCAGADLSGDA------FAAD   91 (264)
T ss_dssp             --CEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHCC----CCSEEEEEESSSCSBCCBCCTTCT------TGGG
T ss_pred             CCeEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhC-CceEEEEECCCCCccCCcCCccch------hhHH
Confidence            35688999 7999999999995 7999999999999999999988 999999999999999999998311      1122


Q ss_pred             cchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHH
Q 004972           82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIE  158 (721)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~  158 (721)
                      +.....+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|+|++|..+|++
T Consensus        92 ~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~  170 (264)
T 3he2_A           92 YPDRLIELH-KAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGLALDNWSIRRLSSLVGHGRARA  170 (264)
T ss_dssp             HHHHHHHHH-HHHHHCSSCEEEEECSCEETHHHHHHHHSSEEEECTTCEEECTHHHHTCCCCHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHH-HHHHhCCCCEEEEECCcEEcchhHHHHhCCEEEEcCCCEEECcccccCcCCcchHHHHHHHHhCHHHHHH
Confidence            333445566 6799999999999999999999999999999999999999999999999997   899999999999999


Q ss_pred             HHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCC
Q 004972          159 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM  238 (721)
Q Consensus       159 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (721)
                      |++||++++|+||+++||||+|++    .+++.++|+++++.+|.+                                  
T Consensus       171 llltG~~i~A~eA~~~GLV~~v~~----~~~a~~~A~~la~~~p~a----------------------------------  212 (264)
T 3he2_A          171 MLLSAEKLTAEIALHTGMANRIGT----LADAQAWAAEIARLAPLA----------------------------------  212 (264)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSEECC----HHHHHHHHHHHHTSCHHH----------------------------------
T ss_pred             HHHcCCCccHHHHHHCCCeEEEec----HHHHHHHHHHHHcCCHHH----------------------------------
Confidence            999999999999999999999996    467899999999988643                                  


Q ss_pred             hhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004972          239 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  292 (721)
Q Consensus       239 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  292 (721)
                        ...+|++++..  .+++++++.|.+.+..++.|+|++|++.+|++||+|...
T Consensus       213 --~~~~K~~l~~~--~~~~~~~~~e~~~~~~~~~s~d~~Eg~~AF~ekR~P~f~  262 (264)
T 3he2_A          213 --IQHAKRVLNDD--GAIEEAWPAHKELFDKAWGSQDVIEAQVARMEKRPPKFQ  262 (264)
T ss_dssp             --HHHHHHHHHTS--SCSCCCCHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred             --HHHHHHHHHcc--CCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCCC
Confidence              23456777765  345677888999999999999999999999999998753

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum}

Probab=100.00  E-value=8.2e-47  Score=390.97  Aligned_cols=240  Identities=28%  Similarity=0.441  Sum_probs=212.2

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCccc
Q 004972            1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS   80 (721)
Q Consensus         1 m~~~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~   80 (721)
                      |+ +.|.++. +++|++||||||+.|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++..... ....
T Consensus        22 m~-~~v~~~~-~~~Va~ItlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~-~~~~   98 (277)
T 4di1_A           22 MN-EFVSVVA-DQGLATLVVSRPPTNAMTRQVYREIVAAADELGRRDDIGAVVLFGGHEIFSAGDDMPELRTLNA-PEAD   98 (277)
T ss_dssp             -C-CSEEEEE-ETTEEEEEECCTTTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSCSBCCBCHHHHHTCCH-HHHH
T ss_pred             CC-ceEEEEE-ECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCEecCcCcccccccCh-HHHH
Confidence            44 5789999 7999999999996699999999999999999999999999999999999999999999865321 1122


Q ss_pred             ccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHH
Q 004972           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAI  157 (721)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~  157 (721)
                      .+......++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|+|++|..+|+
T Consensus        99 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~  177 (277)
T 4di1_A           99 TAARVRLEAI-DAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNVKFGATEILAGLIPGGGGMGRLTRVVGSSRAK  177 (277)
T ss_dssp             HHHHHHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHH-HHHHhCCCCEEEEECCeEehhHHHHHHhCCEEEEcCCCEEECcccccCCCCCchHHHHHHHHhCHHHHH
Confidence            2233444566 6799999999999999999999999999999999999999999999999997   89999999999999


Q ss_pred             HHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCC
Q 004972          158 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN  237 (721)
Q Consensus       158 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (721)
                      +|++||++++|+||+++||||+|+|++++++++.++|+++++.+|.                                  
T Consensus       178 ~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~----------------------------------  223 (277)
T 4di1_A          178 ELVFSGRFFDAEEALALGLIDDMVAPDDVYDSAVAWARRYLECPPR----------------------------------  223 (277)
T ss_dssp             HHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHTTTTSCHH----------------------------------
T ss_pred             HHHHcCCCCCHHHHHHCCCccEEeChhHHHHHHHHHHHHHHcCCHH----------------------------------
Confidence            9999999999999999999999999999999999999999998764                                  


Q ss_pred             ChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhc
Q 004972          238 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS  290 (721)
Q Consensus       238 ~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~  290 (721)
                        |+..+|++++.+...+++++++.|.+.+..++.|+          +||+|.
T Consensus       224 --a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~----------ekR~P~  264 (277)
T 4di1_A          224 --ALAAAKAVINDVFELEATERAAAERRRYVELFAAG----------QRGPDG  264 (277)
T ss_dssp             --HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHTTSGG----------GC----
T ss_pred             --HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCc----------ccCCCc
Confidence              33466889999999999999999999999999999          888877

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A

Probab=100.00  E-value=1.4e-46  Score=389.88  Aligned_cols=250  Identities=25%  Similarity=0.409  Sum_probs=215.4

Q ss_pred             CcEEEEE---ecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcCCCCchhhhhccCCCc
Q 004972            4 PRVTMEV---GNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD   78 (721)
Q Consensus         4 ~~v~~~~---~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~   78 (721)
                      ..+.++.   .+++|++||||||+ .|++|.+|+++|.++++.+++|+++++|||||.| ++||+|+|++++..... ..
T Consensus         8 ~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~-~~   86 (272)
T 1hzd_A            8 DELRVRHLEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSS-SE   86 (272)
T ss_dssp             CSEEEEECCGGGTTEEEEEECCGGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCH-HH
T ss_pred             CcEEEEecccccCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCCCChhhhhccCh-HH
Confidence            3455553   25789999999995 7999999999999999999999999999999998 69999999998754211 11


Q ss_pred             ccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHH
Q 004972           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSK  155 (721)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~  155 (721)
                      ...+....++++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|+|++|..+
T Consensus        87 ~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~  165 (272)
T 1hzd_A           87 VGPFVSKIRAVI-NDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSL  165 (272)
T ss_dssp             HHHHHHHHHHHH-HHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHH-HHHHhCCCCEEEEeCceEEecHHHHHHhCCEEEEcCCCEEeCchhccCCCCCchHHHHHHHHhCHHH
Confidence            111222344555 6689999999999999999999999999999999999999999999999997   899999999999


Q ss_pred             HHHHHHcCCCcCHHHHHHcCCccEEcCCchH----HHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHH
Q 004972          156 AIEMMLLSKSITSEEGWKLGLIDAVVTSEEL----LKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQA  231 (721)
Q Consensus       156 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l----~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (721)
                      |++|++||++++|+||+++||||+|+|++++    .+++.+++++++..+|.                            
T Consensus       166 A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~~~~~a~~~a~~la~~~p~----------------------------  217 (272)
T 1hzd_A          166 AKELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPV----------------------------  217 (272)
T ss_dssp             HHHHHHHTCEEEHHHHHHHTSCSEEECCCTTSCHHHHHHHHHHHTTTTSCHH----------------------------
T ss_pred             HHHHHHcCCcCCHHHHHHCCCcceecChhhhhHHHHHHHHHHHHHHHhCCHH----------------------------
Confidence            9999999999999999999999999998875    45677777777776653                            


Q ss_pred             HHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          232 KKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       232 ~~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                              +...+|++++.+...+++++++.|.+.+..++.|+|++|++++|++||+|.+
T Consensus       218 --------a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~~  269 (272)
T 1hzd_A          218 --------AMRVAKLAINQGMEVDLVTGLAIEEACYAQTIPTKDRLEGLLAFKEKRPPRY  269 (272)
T ss_dssp             --------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTTSCCCC
T ss_pred             --------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCC
Confidence                    2335678888888889999999999999999999999999999999998875

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}

Probab=100.00  E-value=1.5e-45  Score=396.56  Aligned_cols=287  Identities=22%  Similarity=0.300  Sum_probs=220.5

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcCCCCchhhhhccCCCc--
Q 004972            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD--   78 (721)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~--   78 (721)
                      .+.|.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++........  
T Consensus         5 ~~~v~~~~-~~~v~~itLnrP~~~Nal~~~m~~~L~~al~~~~~d~~vr~vVltG~g~~~FcaG~Dl~~~~~~~~~~~~~   83 (363)
T 3bpt_A            5 AEEVLLGK-KGCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQKI   83 (363)
T ss_dssp             CCSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEETTSSEEECCBCHHHHHHHHTSSCCC
T ss_pred             CcceEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCcccCCcCHHHHHhhcccccHH
Confidence            45788998 7899999999995 7999999999999999999999999999999998 89999999999864321111  


Q ss_pred             ccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHH
Q 004972           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSK  155 (721)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~  155 (721)
                      ...+......++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+   +++|+|++|. +
T Consensus        84 ~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~-~  161 (363)
T 3bpt_A           84 APVFFREEYMLN-NAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGK-L  161 (363)
T ss_dssp             HHHHHHHHHHHH-HHHHTCSSCEEEEECSEEETHHHHTTTTSSEEEECTTCEEECCGGGTTSCCCTTHHHHHHHSSTT-H
T ss_pred             HHHHHHHHHHHH-HHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCeEEeCCccccCCCCCchHHHHHHHhhHH-H
Confidence            111112223445 6689999999999999999999999999999999999999999999999997   8999999997 9


Q ss_pred             HHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhcc------------CC----------
Q 004972          156 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRT------------DK----------  213 (721)
Q Consensus       156 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~------------~~----------  213 (721)
                      |++|++||++++|+||+++||||+|||++++.+.+..+++ +...++..+....+.            ..          
T Consensus       162 a~~l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~-l~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~  240 (363)
T 3bpt_A          162 GYFLALTGFRLKGRDVYRAGIATHFVDSEKLAMLEEDLLA-LKSPSKENIASVLENYHTESKIDRDKSFILEEHMDKINS  240 (363)
T ss_dssp             HHHHHHHCCCEETHHHHHTTSCSEECCGGGHHHHHHHHHH-CSSCCHHHHHHHHHHHHHHCCTTTTCCCTTGGGHHHHHH
T ss_pred             HHHHHHcCCCCCHHHHHHCCCcceecCHHHHHHHHHHHHh-cccCCHHHHHHHHHHHHhhhcccCCCchhhHHHHHHHHH
Confidence            9999999999999999999999999999998776544432 111111111000000            00          


Q ss_pred             ---CCCcHHHHHHH-----HHHHHHHHHhCCCCh-hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004972          214 ---LGSLSEAREVL-----KLARLQAKKTAPNMP-QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFF  284 (721)
Q Consensus       214 ---~~~~~~~~~~~-----~~~~~~~~~~~~~~~-A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~  284 (721)
                         .++..+....+     ..+.+..++...+-| |+..+|++++.+...+++++++.|.+.+..++.|+|++|++++|+
T Consensus       241 ~f~~~~~~ei~~al~~~~~~~a~~~a~~la~~sP~al~~~k~~l~~~~~~~l~~~l~~E~~~~~~~~~s~D~~EGv~Afl  320 (363)
T 3bpt_A          241 CFSANTVEEIIENLQQDGSSFALEQLKVINKMSPTSLKITLRQLMEGSSKTLQEVLTMEYRLSQACMRGHDFHEGVRAVL  320 (363)
T ss_dssp             HTTSSSHHHHHHHHHHHCCHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSSHHHHHHHHHT
T ss_pred             HhCCCCHHHHHHHHhccChHHHHHHHHHHHhCCchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCccHHhhhhhee
Confidence               00000000001     011122333333444 778899999999999999999999999999999999999999999


Q ss_pred             -Hh-hhhcCCC
Q 004972          285 -AQ-RATSKVP  293 (721)
Q Consensus       285 -~~-r~~~~~~  293 (721)
                       +| |+|++.+
T Consensus       321 ~eK~r~P~~~~  331 (363)
T 3bpt_A          321 IDKDQSPKWKP  331 (363)
T ss_dssp             TSCCCCCCCSS
T ss_pred             eCCCCCCCCCC
Confidence             77 7766543

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A

Probab=100.00  E-value=6e-46  Score=378.64  Aligned_cols=235  Identities=23%  Similarity=0.303  Sum_probs=209.3

Q ss_pred             EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccch
Q 004972            6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD   84 (721)
Q Consensus         6 v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   84 (721)
                      ..++. +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++....... . ..  
T Consensus         5 ~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-~-~~--   79 (243)
T 2q35_A            5 QLTEL-GNGVVQITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYGNYFSSGASKEFLIRKTRGE-V-EV--   79 (243)
T ss_dssp             EEEEE-ETTEEEEEECCGGGTSBSCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECBSCHHHHHHHHTTC-C-CC--
T ss_pred             EEEEe-eCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCCChHHHhhccchh-h-HH--
Confidence            44566 7899999999994 79999999999999999999999999999999999999999999886432111 1 11  


Q ss_pred             HHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHHHHH
Q 004972           85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMML  161 (721)
Q Consensus        85 ~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~l~l  161 (721)
                        ++++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|+|++|..+|++|++
T Consensus        80 --~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l  156 (243)
T 2q35_A           80 --LDLS-GLILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQESVYATNFMKYGFTPVGATSLILREKLGSELAQEMIY  156 (243)
T ss_dssp             --CCCH-HHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEESSSEEECCHHHHTSCCCSSHHHHHHHHHCHHHHHHHHH
T ss_pred             --HHHH-HHHHhCCCCEEEEEcCccccchHHHHHhCCEEEEeCCCEEECCccccCCCCcchHHHHHHHHhCHHHHHHHHH
Confidence              2344 5688999999999999999999999999999999999999999999999997   789999999999999999


Q ss_pred             cCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChhH
Q 004972          162 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH  241 (721)
Q Consensus       162 tg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~  241 (721)
                      ||++++|+||+++||||+|+|++++.+++.++++++++.+|.+                                    .
T Consensus       157 tg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a------------------------------------~  200 (243)
T 2q35_A          157 TGENYRGKELAERGIPFPVVSRQDVLNYAQQLGQKIAKSPRLS------------------------------------L  200 (243)
T ss_dssp             HCCCEEHHHHHHTTCSSCEECHHHHHHHHHHHHHHHTTSCHHH------------------------------------H
T ss_pred             cCCCCCHHHHHHcCCCCEecChhHHHHHHHHHHHHHHhCCHHH------------------------------------H
Confidence            9999999999999999999999999999999999999987643                                    2


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 004972          242 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFF  284 (721)
Q Consensus       242 ~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~  284 (721)
                      ..+|++++.....+++++++.|.+.+..++.|+|++|++++|+
T Consensus       201 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~a~~  243 (243)
T 2q35_A          201 VALKQHLSADIKAKFPEAIKKELEIHQVTFNQPEIASRIQQEF  243 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTTHHHHHHTTC
T ss_pred             HHHHHHHHHhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHhhcC
Confidence            3456777777777788999999999999999999999999874

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis}

Probab=100.00  E-value=1e-45  Score=401.61  Aligned_cols=283  Identities=17%  Similarity=0.219  Sum_probs=219.7

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcCCCCchhhhhccCC-----
Q 004972            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGA-----   76 (721)
Q Consensus         4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~-----   76 (721)
                      +.|.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++......     
T Consensus        42 ~~v~~~~-~~~V~~ItLnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltG~G~~~FcaG~Dl~~~~~~~~~~~~~~  120 (407)
T 3ju1_A           42 QTLATAS-GKLVGVVTLNVEKALNALDLDMVRAMTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHASVAAKGQV  120 (407)
T ss_dssp             EEEECTT-SCEEEEEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTEEEEEEEESSSSEEECCBCCHHHHHHHHHHTSSC
T ss_pred             ceEEEEE-ECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCcccCCCChhhhhhccccccccc
Confidence            4566666 7899999999996 7999999999999999999999999999999999 799999999998653210     


Q ss_pred             -CcccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccC
Q 004972           77 -GDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVG  152 (721)
Q Consensus        77 -~~~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G  152 (721)
                       .....+......++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+   +++|+|++|
T Consensus       121 ~~~~~~~~~~~~~l~-~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~G~t~~L~rl~g  199 (407)
T 3ju1_A          121 TEVAKVFFEEEYRLD-YLLHTYGKPVLVWGDGIVMGGGLGLMAGASHKVVTETSRIAMPEVTIGLYPDVGGSYFLNRMPG  199 (407)
T ss_dssp             CHHHHHHHHHHHHHH-HHHHTCSSCEEEECCSEEETHHHHHHHHCSEEEECTTCEEECGGGGGTCCSCTTHHHHTTTSST
T ss_pred             HHHHHHHHHHHHHHH-HHHHHCCCCEEEEECCccccCcchHHhcCCEEEEcCCCEEeChHhhcCCCCCchHHHHHhhhhH
Confidence             10112222233445 6699999999999999999999999999999999999999999999999997   899999999


Q ss_pred             HHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHH---H----------------HHHHHHHHHhcCc-----------
Q 004972          153 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK---V----------------SRLWALDIAARRK-----------  202 (721)
Q Consensus       153 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~---~----------------a~~~a~~~a~~~~-----------  202 (721)
                       .+|++|++||++++|+||+++||||+|||++++.+   +                +.++++++.....           
T Consensus       200 -~~A~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~L~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~l~~~  278 (407)
T 3ju1_A          200 -KMGLFLGLTAYHMNAADACYVGLADHYLNRDDKELMFDAMATLDWSDSPALNHQRLDTMINELSNQVDIPKGDSVLAES  278 (407)
T ss_dssp             -THHHHHHHHCCCBCHHHHHHHTSCSEECCGGGHHHHHHHHHSSCCCSCHHHHHHHHHHHHHHHHTTCSSCCCCCHHHHT
T ss_pred             -HHHHHHHHcCCcCcHHHHHHCCCccEEcCHHHHHHHHHHHhcccccccccchhHHHHHHHHHhhhhccccCCchhHHHH
Confidence             99999999999999999999999999999999887   3                3334433322110           


Q ss_pred             -hhhhhhhccCCCCCcHHHHHHHH-------HHHHHHHH-hCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCC
Q 004972          203 -PWIRSLHRTDKLGSLSEAREVLK-------LARLQAKK-TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVML  273 (721)
Q Consensus       203 -~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~-~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s  273 (721)
                       .++...+.    .++.+....+.       .+....++ ....-.|...+|++++.+...+++++++.|.+.+..++.+
T Consensus       279 ~~~I~~~f~----~sv~~i~~~L~~~~~~~~~a~~~a~~la~~sP~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~s  354 (407)
T 3ju1_A          279 QEMIDRLMA----GSLTDIVTRMSTLSTDEAWLSKACATMLAGSPISWHLAYIQTQLGTKLSLAQCFKWELTVSVNVCAK  354 (407)
T ss_dssp             HHHHHHHTC----SCHHHHHHHHHHCCCSCHHHHHHHHHHHHSCHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhc----CCHHHHHHHHHhcccccHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCC
Confidence             01111111    11111100000       01111111 1123348889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH-Hh-hhhcCCC
Q 004972          274 DTSRGLVHVFF-AQ-RATSKVP  293 (721)
Q Consensus       274 ~~~~~~i~aF~-~~-r~~~~~~  293 (721)
                      +|++||+++|+ +| |+|++.+
T Consensus       355 ~D~~EGvrAflidKdr~P~w~~  376 (407)
T 3ju1_A          355 GDFCEGVRALLIDKDKQPKWQF  376 (407)
T ss_dssp             SSHHHHHHHHTTSCCCCCCCSS
T ss_pred             HHHHHHHHHHHhcCCcCCCCCC
Confidence            99999999999 87 7777655

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A

Probab=100.00  E-value=3.2e-45  Score=381.47  Aligned_cols=242  Identities=18%  Similarity=0.186  Sum_probs=201.0

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCC--
Q 004972            1 MAAPRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG--   77 (721)
Q Consensus         1 m~~~~v~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~--   77 (721)
                      |+++.+.++. +++|++|||||| +.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++.......  
T Consensus         6 m~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~   84 (280)
T 1pjh_A            6 RQNEKISYRI-EGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTN   84 (280)
T ss_dssp             CCBTTEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCCBCHHHHHC-------
T ss_pred             ccCCceEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcCHHHHhhccccccc
Confidence            5667899999 789999999999 579999999999999999999999999999999999999999999885421111  


Q ss_pred             -ccc---ccc----hHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEee-CCceEeCcccccCcccc---cc
Q 004972           78 -DVS---LMP----DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA-PKTQLGLPELTLGVIPG---TQ  145 (721)
Q Consensus        78 -~~~---~~~----~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~-~~a~~~~pe~~~Gl~P~---~~  145 (721)
                       ...   .+.    ...+.++ ..+.++||||||+|||+|+|||++|+++||+||++ ++++|++||+++|++|+   ++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~~ia~~~~a~f~~pe~~lGl~p~~g~~~  163 (280)
T 1pjh_A           85 KYPSETSKWVSNFVARNVYVT-DAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTV  163 (280)
T ss_dssp             CCSSHHHHHHHHTHHHHHHHH-HHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHH
T ss_pred             chhhhHHHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeeeHHHHHHHHCCEEEEeCCCCEEeCchhhcCCCCCccHHH
Confidence             000   011    1113455 66899999999999999999999999999999999 99999999999999997   89


Q ss_pred             ccccccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCc-----hHHHHHH-HHHHHHHhcCchhhhhhhccCCCCCcHH
Q 004972          146 RLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE-----ELLKVSR-LWALDIAARRKPWIRSLHRTDKLGSLSE  219 (721)
Q Consensus       146 ~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~-----~l~~~a~-~~a~~~a~~~~~~~~~~~~~~~~~~~~~  219 (721)
                      +|+|++|..+|++|++||++++|+||+++||||+|||++     ++++++. ++++++++.+|.++              
T Consensus       164 ~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~~~~~~l~~~a~~~~a~~la~~~~~a~--------------  229 (280)
T 1pjh_A          164 SLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSC--------------  229 (280)
T ss_dssp             HHHHHHCHHHHHHHHHTTCCEEHHHHHHTTCCSEECCCCTTCHHHHHHHHHHHHHHHHTTCCHHHH--------------
T ss_pred             HHHHHhCHHHHHHHHHhCCCCCHHHHHHCCCcceeeCCccccHHHHHHHHHHHHHHHHHcCCHHHH--------------
Confidence            999999999999999999999999999999999999885     7888885 99999999886432              


Q ss_pred             HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004972          220 AREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  292 (721)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  292 (721)
                                            ..+|++++....    ..++        ...++|+++++.+|++||++..+
T Consensus       230 ----------------------~~~K~~l~~~~~----~~l~--------~~~~~d~~e~~~af~~kr~~e~~  268 (280)
T 1pjh_A          230 ----------------------LGMKKLLKSNHI----DAFN--------KANSVEVNESLKYWVDGEPLKRF  268 (280)
T ss_dssp             ----------------------HHHHHHHHTTTH----HHHH--------HHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             ----------------------HHHHHHHHHhHH----HHHH--------HhhhHHHHHHHHHHhCCccHHHH
Confidence                                  244566655332    2222        13578999999999999988433

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A*

Probab=100.00  E-value=1e-44  Score=367.17  Aligned_cols=227  Identities=24%  Similarity=0.263  Sum_probs=197.2

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCccc
Q 004972            1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS   80 (721)
Q Consensus         1 m~~~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~   80 (721)
                      |+ +.|.++. +++|++||||||+.|++|.+|+++|.++++++++| ++|+|||||.|++||+|+|++++.... .....
T Consensus         3 M~-~~v~~~~-~~~v~~itlnrp~~Nal~~~~~~~L~~al~~~~~d-~vr~vvltg~g~~F~aG~Dl~~~~~~~-~~~~~   78 (233)
T 3r6h_A            3 MS-GPVTYTH-DDAIGVIRMDDGKVNVLGPTMQQALNEAIDAADRD-NVGALVIAGNHRVFSGGFDLKVLTSGE-AKPAI   78 (233)
T ss_dssp             ---CCEEEEE-ETTEEEEEECCSSSCCCSHHHHHHHHHHHHHHHHH-TCSEEEEECCSSEEECCSCHHHHC----CHHHH
T ss_pred             CC-CceEEEE-ECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEECCCCCccCCcChHHHhccC-hHHHH
Confidence            55 5689999 79999999999989999999999999999999977 699999999999999999999986532 11122


Q ss_pred             ccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHH
Q 004972           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAI  157 (721)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~  157 (721)
                      .+....++++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   ++++++++|..+|+
T Consensus        79 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~~g~~~l~~~~g~~~a~  157 (233)
T 3r6h_A           79 DMLRGGFELS-YRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYNVQANEVAIGMTIPYAAMEVLKLRLTPSAYQ  157 (233)
T ss_dssp             HHHHHHHHHH-HHHHTCSSCEEEEECSEEETHHHHHHTTSSEEEECTTCCEECCGGGGTCCCCHHHHHHHHHHSCHHHHH
T ss_pred             HHHHHHHHHH-HHHHhCCCCEEEEECCcchHHHHHHHHhCCEEEEeCCcEEECchhhhCCCCCccHHHHHHHHhCHHHHH
Confidence            2333344556 6799999999999999999999999999999999999999999999999765   88999999999999


Q ss_pred             HHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCC
Q 004972          158 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN  237 (721)
Q Consensus       158 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (721)
                      ++++||++++|+||+++||||+|||++++.+++.++|+++++.+|.+                                 
T Consensus       158 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a---------------------------------  204 (233)
T 3r6h_A          158 QAAGLAKTFFGETALAAGFIDEISLPEVVLSRAEEAAREFAGLNQQA---------------------------------  204 (233)
T ss_dssp             HHHHSCCEECHHHHHHHTSCSEECCGGGHHHHHHHHHHHHHTSCHHH---------------------------------
T ss_pred             HHHHcCCcCCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHcCCHHH---------------------------------
Confidence            99999999999999999999999999999999999999999988643                                 


Q ss_pred             ChhHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 004972          238 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFK  268 (721)
Q Consensus       238 ~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~  268 (721)
                         ...+|++++.....+++++++.|.+.|.
T Consensus       205 ---~~~~K~~l~~~~~~~l~~~l~~e~~~f~  232 (233)
T 3r6h_A          205 ---HNATKLRARAEALKAIRAGIDGIEAEFG  232 (233)
T ss_dssp             ---HHHHHHHTTHHHHHHHHHHHHTSHHHHC
T ss_pred             ---HHHHHHHHHHHHHhHHHHHHHHHHHHhC
Confidence               3355677777777788999999988763

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D

Probab=100.00  E-value=1.9e-44  Score=370.73  Aligned_cols=236  Identities=15%  Similarity=0.214  Sum_probs=200.6

Q ss_pred             CCcEEEEEecC-cEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCccc
Q 004972            3 APRVTMEVGND-GVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS   80 (721)
Q Consensus         3 ~~~v~~~~~~~-~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~   80 (721)
                      ++.+.+++ ++ +|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|+.||+|+|++++..........
T Consensus        22 ~~~i~~~~-~~~~Va~ItLnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~  100 (263)
T 2j5g_A           22 YENLHFHR-DENGILEVRMHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVILTGSGDAWMAEIDFPSLGDVTNPREWD  100 (263)
T ss_dssp             CTTEEEEE-CTTCEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECEECSGGGCCTTSHHHHH
T ss_pred             CCeEEEEE-cCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCcccCcCHHHHhccCCHHHHH
Confidence            45688999 67 99999999995 79999999999999999999999999999999999999999999875421111111


Q ss_pred             ccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeC-cccccCcccc---ccccccccCHHHH
Q 004972           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGL-PELTLGVIPG---TQRLPRLVGLSKA  156 (721)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~-pe~~~Gl~P~---~~~l~r~~G~~~a  156 (721)
                      .+......++ ..+.++||||||+|||+|+ ||++|+++||+||++++++|++ ||+++|++|+   +++|+|++|..+|
T Consensus       101 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~L~r~vG~~~A  178 (263)
T 2j5g_A          101 KTYWEGKKVL-QNLLDIEVPVISAVNGAAL-LHSEYILTTDIILASENTVFQDMPHLNAGIVPGDGVHILWPLALGLYRG  178 (263)
T ss_dssp             HHHHHHHHHH-HHHHTCCSCEEEEECSEEC-SCGGGGGGCSEEEEETTCEECCCHHHHHTCCCCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-HHHHhCCCCEEEEECCcch-HHHHHHHhCCEEEEcCCCEEecCcccccccCCCccHHHHHHHHcCHHHH
Confidence            1222234555 6689999999999999999 6999999999999999999999 9999999997   7899999999999


Q ss_pred             HHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004972          157 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  236 (721)
Q Consensus       157 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (721)
                      ++|++||++++|+||+++||||+|||++++++++.++++++++.+|.++                               
T Consensus       179 ~~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~-------------------------------  227 (263)
T 2j5g_A          179 RYFLFTQEKLTAQQAYELNVVHEVLPQSKLMERAWEIARTLAKQPTLNL-------------------------------  227 (263)
T ss_dssp             HHHHHTTCCEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSCHHHH-------------------------------
T ss_pred             HHHHHcCCCCCHHHHHHCCCccEecChHHHHHHHHHHHHHHHhCCHHHH-------------------------------
Confidence            9999999999999999999999999999999999999999999886432                               


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhh
Q 004972          237 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA  288 (721)
Q Consensus       237 ~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~  288 (721)
                           ..+|++++.....++++++..|           ...|++++|++||.
T Consensus       228 -----~~~K~~l~~~~~~~l~~~l~~e-----------~~~eg~~af~~~~~  263 (263)
T 2j5g_A          228 -----RYTRVALTQRLKRLVNEGIGYG-----------LALEGITATDLRNT  263 (263)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHTTC-
T ss_pred             -----HHHHHHHHhhhhccHHHHHHHH-----------HHHhhHHHHHhccC
Confidence                 3456677766555566665554           45699999999873

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A

Probab=100.00  E-value=3.4e-43  Score=374.17  Aligned_cols=203  Identities=24%  Similarity=0.335  Sum_probs=173.0

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcc
Q 004972            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (721)
Q Consensus         1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   79 (721)
                      |.+++|.++. +++|++||||||+ .|+||.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++.........
T Consensus        32 ~~~~~i~~e~-~~~Va~ItLnrP~~~NAl~~~m~~eL~~al~~~~~d~~vrvvVltG~G~~FcaG~Dl~~~~~~~~~~~~  110 (333)
T 3njd_A           32 DNLKTMTYEV-TDRVARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRGEGFCAGFDLSAYAEGSSSAGG  110 (333)
T ss_dssp             TSCSSEEEEE-ETTEEEEEECCGGGTTCBCTHHHHHHHHHHHHHHHCTTCCEEEEEESTTSSBCCBC-------------
T ss_pred             CCCCeEEEEE-ECCEEEEEeCCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecCcCHHHHhhccccccc
Confidence            3467899999 7999999999995 7999999999999999999999999999999999999999999998653211100


Q ss_pred             ---------------------c--------ccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCce
Q 004972           80 ---------------------S--------LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ  130 (721)
Q Consensus        80 ---------------------~--------~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~  130 (721)
                                           .        .+...+..++ ..|.++||||||+|||+|+|||++|+++||+|||+++++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~LalacD~rias~~a~  189 (333)
T 3njd_A          111 GSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGF-ASLMHCDKPTVVKIHGYCVAGGTDIALHADQVIAAADAK  189 (333)
T ss_dssp             --CCTTSTTCHHHHHHTTCSSSCCCHHHHHHHHHHHHHHH-THHHHSSSCEEEEECSEEETHHHHHHTTSSEEEECTTCE
T ss_pred             ccccccccccccccccccccccccchhhHHHHHHHHHHHH-HHHHhCCCCEEEEECCEEeHHHHHHHHhCCEEEECCCCe
Confidence                                 0        0111223344 568899999999999999999999999999999999999


Q ss_pred             EeCcccccCccccccccccccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhh
Q 004972          131 LGLPELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWI  205 (721)
Q Consensus       131 ~~~pe~~~Gl~P~~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~  205 (721)
                      |++||+++|++|+..+|++++|..+|++|++||++++|+||+++||||+|||++++++++.++|++|++.++.++
T Consensus       190 f~~pe~~lG~~P~~g~l~~~vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~ia~~~~~al  264 (333)
T 3njd_A          190 IGYPPMRVWGVPAAGLWAHRLGDQRAKRLLFTGDCITGAQAAEWGLAVEAPDPADLDARTERLVERIAAMPVNQL  264 (333)
T ss_dssp             EECGGGGTTCCCTTCCHHHHHCHHHHHHHHTTCCEEEHHHHHHTTSSSBCCCGGGHHHHHHHHHHHHHTSCHHHH
T ss_pred             eechhhceeccCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHCCCccEecChHHHHHHHHHHHHHHHcCCHHHH
Confidence            999999999999955899999999999999999999999999999999999999999999999999999887543

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV}

Probab=100.00  E-value=2.3e-44  Score=364.34  Aligned_cols=222  Identities=21%  Similarity=0.287  Sum_probs=195.8

Q ss_pred             CcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccc
Q 004972            4 PRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMP   83 (721)
Q Consensus         4 ~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~   83 (721)
                      +.|.++. +++|++||||||+.|++|.+|+++|.+++++++.|  +++|||||.|++||+|+|++++....  .....+.
T Consensus         6 ~~v~~~~-~~~v~~itlnrp~~Nal~~~~~~~L~~al~~~~~d--~~~vvltg~g~~F~aG~Dl~~~~~~~--~~~~~~~   80 (232)
T 3ot6_A            6 DLVSYHL-DDGVATLTLNNGKVNAISPDVIIAFNAALDQAEKD--RAIVIVTGQPGILSGGYDLKVMTSSA--EAAINLV   80 (232)
T ss_dssp             HHEEEEE-ETTEEEEEECCTTTTCBCHHHHHHHHHHHHHHHHT--TCEEEEECBTEEEECCBCHHHHHHCH--HHHHHHH
T ss_pred             cceEEEE-ECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHhcC--CCEEEEECCCCCccCCcCHHHHhhCh--HHHHHHH
Confidence            4688998 79999999999989999999999999999999976  48999999999999999999986521  1122233


Q ss_pred             hHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCC-ceEeCcccccCcccc---ccccccccCHHHHHHH
Q 004972           84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPG---TQRLPRLVGLSKAIEM  159 (721)
Q Consensus        84 ~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~-a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~l  159 (721)
                      ...+.++ +.+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|++|+   ++++++++|..+|++|
T Consensus        81 ~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~g~~~l~~~ig~~~a~~l  159 (232)
T 3ot6_A           81 AQGSTLA-RRMLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVAGPFSIGLNEVQIGMTMHHAGIELARDRLRKSAFNRS  159 (232)
T ss_dssp             HHHHHHH-HHHHTCSSCEEEECCEEEETHHHHHHTTSSEEEEECSSCCEECCTTTTTCCCCHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHHH-HHHHcCCCCEEEEECCEeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCchhHHHHHHHHhCHHHHHHH
Confidence            3445566 6799999999999999999999999999999999998 899999999999864   7889999999999999


Q ss_pred             HHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCCh
Q 004972          160 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP  239 (721)
Q Consensus       160 ~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (721)
                      ++||++++|+||+++||||+|||++++++++.++|+++++.+|.+                                   
T Consensus       160 ~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a-----------------------------------  204 (232)
T 3ot6_A          160 VINAEMFDPEGAMAAGFLDKVVSVEELQGAALAVAAQLKKINMNA-----------------------------------  204 (232)
T ss_dssp             HTSCCEECHHHHHHHTSCSEEECTTTHHHHHHHHHHHHTTSCHHH-----------------------------------
T ss_pred             HHcCCccCHHHHHHCCCCCEecCHHHHHHHHHHHHHHHHcCCHHH-----------------------------------
Confidence            999999999999999999999999999999999999999988643                                   


Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 004972          240 QHQACLDVIEEGIVHGGYSGVLKEAKVF  267 (721)
Q Consensus       240 A~~~~~~~i~~~~~~~~~~~l~~E~~~~  267 (721)
                       ...+|++++.....+++++++.|.+.|
T Consensus       205 -~~~~K~~l~~~~~~~l~~~l~~E~~~~  231 (232)
T 3ot6_A          205 -HKKTKLKVRKGLLDTLDAAIEQDRQHM  231 (232)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             -HHHHHHHHHHHhHhHHHHHHHHHHHhc
Confidence             335677888888888999999998764

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A

Probab=100.00  E-value=3.6e-43  Score=369.38  Aligned_cols=253  Identities=18%  Similarity=0.184  Sum_probs=211.6

Q ss_pred             CCcEEEEEe-cCcEEEEEeCCCC-----CCCCCHHHHHHHHHHHHHHhc-----CCCceEEEEEeCCCCCcCCCCchhhh
Q 004972            3 APRVTMEVG-NDGVAIITLINPP-----VNALAIPIVAGLKDKFEEATS-----RDDVKAIVLTGNGGRFSGGFDINVFQ   71 (721)
Q Consensus         3 ~~~v~~~~~-~~~v~~i~l~~p~-----~Nal~~~~~~~l~~~l~~~~~-----~~~v~~vVltg~g~~F~aG~Dl~~~~   71 (721)
                      |+++.+..+ +++|++||||||+     +|+||.+|+.+|.+++++++.     |+++|+|||||.|++||+|+|++++.
T Consensus        29 y~~i~v~~~~~~~V~~itLnrp~k~n~~rpal~~~m~~eL~~al~~~~~d~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~  108 (305)
T 3m6n_A           29 GSTLRIIEEPQRDVYWIHMHADLAINPGRACFSTRLVDDITGYQTNLGQRLNTAGVLAPHVVLASDSDVFNLGGDLALFC  108 (305)
T ss_dssp             CTTEEEEEETTTTEEEEEECTTC-----CCSBCHHHHHHHHHHHHHHHHHHHHHTCSSCEEEEEESSSSSBCCBCHHHHH
T ss_pred             CceEEEEEEEECCEEEEEECCccccCCCCCCCCHHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCeecCcCHHHHH
Confidence            455666443 7889999999984     459999999999999999987     58999999999999999999999986


Q ss_pred             hccCCCcccc---cchHHHHHHHHHH---hhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc--
Q 004972           72 KVHGAGDVSL---MPDVSVELVVNLI---EDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG--  143 (721)
Q Consensus        72 ~~~~~~~~~~---~~~~~~~~~~~~l---~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~--  143 (721)
                      ..........   +.......+ ..+   ..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+  
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g  187 (305)
T 3m6n_A          109 QLIREGDRARLLDYAQRCVRGV-HAFHVGLGARAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDLFPGMG  187 (305)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHH-HHHHTGGGTTCEEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSS
T ss_pred             hccccccHHHHHHHHHHHHHHH-HHHHHhcCCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEECchhccCcCCCcc
Confidence            5321111111   111122222 223   3589999999999999999999999999999999999999999999997  


Q ss_pred             -ccccccccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHH
Q 004972          144 -TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEARE  222 (721)
Q Consensus       144 -~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~  222 (721)
                       +++|+|++|..+|++|++||++++|+||+++||||+|||++++++++.++|++|++ +|.                   
T Consensus       188 ~~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~-~p~-------------------  247 (305)
T 3m6n_A          188 AYSFMCQRISAHLAQKIMLEGNLYSAEQLLGMGLVDRVVPRGQGVAAVEQVIRESKR-TPH-------------------  247 (305)
T ss_dssp             HHHHHTTTSCHHHHHHHHHHCCEEEHHHHHHHTSCSEEECTTCHHHHHHHHHHHHTT-CHH-------------------
T ss_pred             HHHHHHHHhcHHHHHHHHHcCCCCCHHHHHHCCCCCEecChhHHHHHHHHHHHHHhh-ChH-------------------
Confidence             89999999999999999999999999999999999999999999999999999986 442                   


Q ss_pred             HHHHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCC
Q 004972          223 VLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  293 (721)
Q Consensus       223 ~~~~~~~~~~~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~  293 (721)
                                       |...+|++++.....+++++++.|.+.+..++.|+|....+..++-+.+.++++
T Consensus       248 -----------------a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~~~~m~~l~~~q~~~~~  301 (305)
T 3m6n_A          248 -----------------AWAAMQQVREMTTAVPLEEMMRITEIWVDTAMQLGEKSLRTMDRLVRAQSRRSG  301 (305)
T ss_dssp             -----------------HHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC----
T ss_pred             -----------------HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHhhccc
Confidence                             334668889999999999999999999999999999988888777776665543

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A*

Probab=100.00  E-value=1.3e-43  Score=384.05  Aligned_cols=243  Identities=23%  Similarity=0.217  Sum_probs=199.8

Q ss_pred             CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC--------C-CCCcCCCCchhhhhc
Q 004972            4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN--------G-GRFSGGFDINVFQKV   73 (721)
Q Consensus         4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~--------g-~~F~aG~Dl~~~~~~   73 (721)
                      +.|.++. +++|++||||||+ .|+||.+|+.+|.+++++++.|+++|+|||||.        | ++||+|+|++++...
T Consensus       167 ~~v~~e~-~~gVa~ItLNRP~k~NALs~~m~~eL~~al~~~~~D~~VRvVVLtG~~~~~p~~aG~~~FcAG~DL~~~~~~  245 (440)
T 2np9_A          167 EAVHLER-RDGVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVFSAGINLKYLSQG  245 (440)
T ss_dssp             SSEEEEE-ETTEEEEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECBCCSTTTTTCBCCBCCBCHHHHHTT
T ss_pred             ceEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCccccccCCCccccCCcchhhhhcc
Confidence            4688888 7899999999995 799999999999999999999999999999994        6 799999999998643


Q ss_pred             cCCCccc---ccchHHHHHHHHHH------------hhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCccccc
Q 004972           74 HGAGDVS---LMPDVSVELVVNLI------------EDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTL  138 (721)
Q Consensus        74 ~~~~~~~---~~~~~~~~~~~~~l------------~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~  138 (721)
                      .......   ......+.++ +.+            .++||||||+|||+|+|||++|+++||+||++++++|++||+++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~pkPvIAAVnG~A~GGG~eLALaCDirIAae~A~Fglpev~l  324 (440)
T 2np9_A          246 GISLVDFLMRRELGYIHKLV-RGVLTNDDRPGWWHSPRIEKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKE  324 (440)
T ss_dssp             CCCTTTTHHHHHHTHHHHHH-HCEECCSCSTTTTTCCEECCCEEEEECSEEETHHHHHGGGCSEEEEETTCEEECCCTTT
T ss_pred             CcchhhhhhHHHHHHHHHHH-HHHHhhcccchhhhhhcCCCCEEEEECCcccccchHHHhhCCEEEEcCCCEEECchhcc
Confidence            2111000   0001122333 323            47999999999999999999999999999999999999999999


Q ss_pred             Ccccc--ccccccccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCC
Q 004972          139 GVIPG--TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGS  216 (721)
Q Consensus       139 Gl~P~--~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~  216 (721)
                      |++|+  +++|+|++|..+|++|++||++|+|+||+++||||+|||++++++++.+++++++.   .             
T Consensus       325 Gl~P~~g~~~L~rlvG~~~A~ellLtG~~i~A~EA~~~GLV~~Vvp~~eL~~~a~~~A~~la~---~-------------  388 (440)
T 2np9_A          325 GIIPGAANLRLGRFAGPRVSRQVILEGRRIWAKEPEARLLVDEVVEPDELDAAIERSLTRLDG---D-------------  388 (440)
T ss_dssp             CCCCTTHHHHHHHHHHHHHHHHHHHHCCCEETTSGGGGGTCSEEECHHHHHHHHHHHHHTTCS---H-------------
T ss_pred             CcCcchHHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCCcEecChHHHHHHHHHHHHHhCH---H-------------
Confidence            99998  88999999999999999999999999999999999999999999999998877632   1             


Q ss_pred             cHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhhcCCH---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhh
Q 004972          217 LSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGG---YSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA  288 (721)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~i~~~~~~~~---~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~  288 (721)
                                             |+..+|++++.... +.   .+.+..|...+..++.|+|++|++.+|++||+
T Consensus       389 -----------------------Av~~~K~~l~~~~~-~~~~~~~~l~~e~~~~~~~~~s~D~~Egv~AFleKR~  439 (440)
T 2np9_A          389 -----------------------AVLANRRMLNLADE-SPDGFRAYMAEFALMQALRLYGHDVIDKVGRFGGRPP  439 (440)
T ss_dssp             -----------------------HHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHTCHHHHHHHHTCC----
T ss_pred             -----------------------HHHHHHHHHHhhhc-chhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhCCC
Confidence                                   22345666666544 33   35667778889999999999999999999986

>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A

Probab=100.00  E-value=1.6e-42  Score=360.40  Aligned_cols=201  Identities=27%  Similarity=0.331  Sum_probs=171.2

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcc
Q 004972            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (721)
Q Consensus         1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   79 (721)
                      |+++.|.++. +++|++||||||+ .|+||.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++.........
T Consensus        17 ~~~~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~   95 (279)
T 3t3w_A           17 RTEMYIDYDV-SDRIATITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANGKHFSAGHDLRGGGPVPDKLTL   95 (279)
T ss_dssp             --CCSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECSSCSBCCBCCC--------CCH
T ss_pred             ccCCeEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCceeeccChHhhhhcccccch
Confidence            4567899999 7999999999995 7999999999999999999999999999999999999999999998653221111


Q ss_pred             c-cc---chHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc-ccccccccCHH
Q 004972           80 S-LM---PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG-TQRLPRLVGLS  154 (721)
Q Consensus        80 ~-~~---~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~-~~~l~r~~G~~  154 (721)
                      . .+   ......++ .++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+.|+ ...+++++|..
T Consensus        96 ~~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~~~~~~~~~~~vG~~  174 (279)
T 3t3w_A           96 EFIYAHESRRYLEYS-LRWRNVPKPSIAAVQGRCISGGLLLCWPCDLIIAAEDALFSDPVVLMDIGGVEYHGHTWELGPR  174 (279)
T ss_dssp             HHHHHHHHHHTHHHH-HHHHHCSSCEEEEECSEEEGGGHHHHTTSSEEEEETTCEEECCGGGGTCSSCSSCCHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCeEhHHHHHHHHhCCEEEecCCCEEeCcHHhcCCCCchHHHHHhhcCHH
Confidence            0 11   11223444 6689999999999999999999999999999999999999999999999554 33349999999


Q ss_pred             HHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCch
Q 004972          155 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKP  203 (721)
Q Consensus       155 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~  203 (721)
                      +|++|++||++++|+||+++||||+|||++++++++.++|+++++.+|.
T Consensus       175 ~A~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~  223 (279)
T 3t3w_A          175 KAKEILFTGRAMTAEEVAQTGMVNRVVPRDRLDAETRALAGEIAKMPPF  223 (279)
T ss_dssp             HHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHH
T ss_pred             HHHHHHHcCCccCHHHHHHCCCCcEeeChHHHHHHHHHHHHHHHcCCHH
Confidence            9999999999999999999999999999999999999999999998864

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A

Probab=100.00  E-value=1e-42  Score=357.16  Aligned_cols=234  Identities=18%  Similarity=0.231  Sum_probs=196.9

Q ss_pred             CcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCccccc
Q 004972            4 PRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM   82 (721)
Q Consensus         4 ~~v~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (721)
                      +.+.+++ +++|++|||||| +.|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++... .......+
T Consensus        16 ~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~-~~~~~~~~   93 (257)
T 1szo_A           16 ENIRLER-DGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNLG-TPHDWDEI   93 (257)
T ss_dssp             TTEEEEE-ETTEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCEECGGGSCCS-SHHHHHHH
T ss_pred             ceEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCccccCcCchhhhcC-CHHHHHHH
Confidence            5689999 789999999999 47999999999999999999999999999999999999999999987531 11111111


Q ss_pred             chHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeC-cccccCcccc---ccccccccCHHHHHH
Q 004972           83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGL-PELTLGVIPG---TQRLPRLVGLSKAIE  158 (721)
Q Consensus        83 ~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~-pe~~~Gl~P~---~~~l~r~~G~~~a~~  158 (721)
                      .....+++ ..+.++||||||+|||+|+ ||++|+++||+||++++++|++ ||+++|++|+   +++|+|++|..+|++
T Consensus        94 ~~~~~~~~-~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~l~r~vG~~~A~~  171 (257)
T 1szo_A           94 IFEGQRLL-NNLLSIEVPVIAAVNGPVT-NAPEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRY  171 (257)
T ss_dssp             HHHHHHHH-HHHHHCCSCEEEEECSCBC-SSTHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHH-HHHHcCCCcEEEEECCchH-HHHHHHHHCCEEEEeCCCEEecCcccccccCCCccHHHHHHHHcCHHHHHH
Confidence            22234555 6689999999999999999 5999999999999999999999 9999999997   789999999999999


Q ss_pred             HHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCC
Q 004972          159 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM  238 (721)
Q Consensus       159 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (721)
                      |++||++++|+||+++||||+|||++++.+++.++|+++++.+|.++                                 
T Consensus       172 llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~---------------------------------  218 (257)
T 1szo_A          172 FLLTGQELDARTALDYGAVNEVLSEQELLPRAWELARGIAEKPLLAR---------------------------------  218 (257)
T ss_dssp             HHHTTCEEEHHHHHHHTSCSEEECHHHHHHHHHHHHHHHHTSCHHHH---------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCceEEeChHHHHHHHHHHHHHHHhCCHHHH---------------------------------
Confidence            99999999999999999999999999999999999999999886432                                 


Q ss_pred             hhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhh
Q 004972          239 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA  288 (721)
Q Consensus       239 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~  288 (721)
                         ..+|++++.....+++++++.|..           .+++.+|-.+-+
T Consensus       219 ---~~~K~~l~~~~~~~l~~~l~~~~~-----------~eg~~a~~~~~~  254 (257)
T 1szo_A          219 ---RYARKVLTRQLRRVMEADLSLGLA-----------HEALAAIDLGME  254 (257)
T ss_dssp             ---HHHHHHHSHHHHHHHHHHHHHHHH-----------HHHHHHHHHC--
T ss_pred             ---HHHHHHHHhhhhccHHHHHHHHHH-----------Hhhhhhhhcccc
Confidence               245666766666566666666543           367888876544

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=100.00  E-value=3.8e-38  Score=342.88  Aligned_cols=201  Identities=24%  Similarity=0.320  Sum_probs=179.0

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-----------CCCCCHHHHHHHHHHHHHHhcC-CCceEEEEEe-CCCCCcCCCCchh
Q 004972            3 APRVTMEVGNDGVAIITLINPP-----------VNALAIPIVAGLKDKFEEATSR-DDVKAIVLTG-NGGRFSGGFDINV   69 (721)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~-----------~Nal~~~~~~~l~~~l~~~~~~-~~v~~vVltg-~g~~F~aG~Dl~~   69 (721)
                      +++|.++. +++|++||||||+           .|++|.+|+.+|.+++++++.| +++|+||||| .|+.||+|+|+++
T Consensus        20 ~~~v~ve~-~ggVA~ITLNRPed~~l~~g~~~k~NALs~~ml~eL~~AL~~~~~D~~~VRaVVLTGa~G~~FcAGaDL~e   98 (556)
T 2w3p_A           20 YKHWKLSF-NGPVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKDRVFCSGANIFM   98 (556)
T ss_dssp             CSSEEEEE-ETTEEEEEECCCTTCCSSSSCCCCTTEECHHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECEECHHH
T ss_pred             CceEEEEe-eCCEEEEEEecccccccccccCCCCCCCCHHHHHHHHHHHHHHHhCCCCceEEEEeCCCCCcccCCcCHHH
Confidence            35688998 7899999999995           6999999999999999999999 9999999999 8999999999999


Q ss_pred             hhhccCCCcccccchHHHHHHHHHH----hhCCCcEEEEECCcccccchHhhhhcCEEEeeCC--ceEeCcccc-cCccc
Q 004972           70 FQKVHGAGDVSLMPDVSVELVVNLI----EDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELT-LGVIP  142 (721)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~--a~~~~pe~~-~Gl~P  142 (721)
                      +...... ....+....++++ ..|    .++||||||+|||+|+|||++|+++||+||++++  ++|++||++ +|++|
T Consensus        99 l~~~~~~-~~~~~~~~~~~l~-~~L~~a~~~~pKPVIAAVnG~AlGGGleLALACD~rIAse~~~A~FglPEv~~LGL~P  176 (556)
T 2w3p_A           99 LGLSTHA-WKVNFCKFTNETR-NGLEDSSRHSGLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSVSLPEVPLLGVLP  176 (556)
T ss_dssp             HHHSCHH-HHHHHHHHHHHHH-HHHHHHHHHTSCEEEEEECSEEETHHHHHHHHSSEEEEECSSSCEEECCHHHHHSSCC
T ss_pred             HhhcccH-HHHHHHHHHHHHH-HHHHHHHhcCCCCEEEEECCeechhhHHHHHhCCEEEEcCCCCcEEecccccccCCCC
Confidence            8653211 1111222334555 567    8999999999999999999999999999999999  999999999 99999


Q ss_pred             c---ccccc--cccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhh
Q 004972          143 G---TQRLP--RLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIR  206 (721)
Q Consensus       143 ~---~~~l~--r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~  206 (721)
                      +   +++|+  |++|..+|++|+++|++++|+||+++||||+|||++++++++.++|+++++.+|.+++
T Consensus       177 g~Ggt~rLp~~RlVG~~rA~eLlLTGr~isA~EAl~lGLVdeVVp~~eL~~~A~~lA~~LA~~~p~Av~  245 (556)
T 2w3p_A          177 GTGGLTRVTDKRKVRHDRADIFCTVVEGVRGERAKAWRLVDEVVKPNQFDQAIQARALELAAQSDRPAH  245 (556)
T ss_dssp             TTTHHHHHHHTSCCCHHHHHHHTTCSSCEEHHHHHHTTSCSEEECHHHHHHHHHHHHHHHHTTCCCCTT
T ss_pred             CccHHHHHHhhccCCHHHHHHHHHcCCCCCHHHHHHCCCceEEeChhHHHHHHHHHHHHHHcCChHHHh
Confidence            7   89999  9999999999999999999999999999999999999999999999999999886654

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=99.89  E-value=8.8e-23  Score=227.05  Aligned_cols=150  Identities=11%  Similarity=0.085  Sum_probs=136.4

Q ss_pred             cCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHH
Q 004972          419 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPY  498 (721)
Q Consensus       419 ~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~gfi~nRl~~~~  498 (721)
                      .+++.+.++.  ...+|.++++.|+++    ++++|+++++.|++++++.+..|++.+|+.|+.++|.||||+||++.++
T Consensus       324 ~~~~~~~~~~--~~~~~~~~v~~~~~~----~~~vev~~~~~t~~~~~~~~~~~~~~~gk~~~~~~d~~g~i~~Rll~~~  397 (483)
T 3mog_A          324 ETQGETAQAL--AIRLARPVVVIDKMA----GKVVTIAAAAVNPDSATRKAIYYLQQQGKTVLQIADYPGMLIWRTVAMI  397 (483)
T ss_dssp             ECSSSCHHHH--HHHHTSCEEEEECCS----SSEEEEEECTTSCHHHHHHHHHHHHTTTCEEEECCCCTTTTHHHHHHHH
T ss_pred             ccCCcchHHH--hhccccceeeeeccc----cceEEEecCCCCCHHHHHHHHHHHHHcCCceeeecccccHHHHHHHHHH
Confidence            5667777766  345688999999988    7899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHHHHHHHHHHhCCC-CCCCcHHHHHHHHcCCCCccc
Q 004972          499 SQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPD-RSFQSPLVDLLLKSGRNGKAN  574 (721)
Q Consensus       499 ~~Ea~~l~~~Gv-~~~~ID~a~-~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~-~~~~~~~l~~~v~~G~~G~k~  574 (721)
                      +|||++++++|+ +++|||.++ .++|||+|||+++|.+|+|+++++++.+++.+++ ++.|+++|++|+++|++|..-
T Consensus       398 ~nEA~~~l~eGvas~~diD~a~~~G~G~P~GPl~~~D~~Gld~~~~~~~~l~~~~g~~~~~p~~lL~~~v~~G~~~~~~  476 (483)
T 3mog_A          398 INEALDALQKGVASEQDIDTAMRLGVNYPYGPLAWGAQLGWQRILRLLENLQHHYGEERYRPCSLLRQRALLESGYESE  476 (483)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHSCCSSCHHHHHHHHCHHHHHHHHHHHHHHHCCGGGCCCHHHHHHHHHHTCC---
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHcCCCCCCC
Confidence            999999999999 999999999 9999999999999999999999999999999987 455999999999999865443

>3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304}

Probab=99.88  E-value=8.3e-24  Score=187.51  Aligned_cols=103  Identities=20%  Similarity=0.153  Sum_probs=85.5

Q ss_pred             HcCCeeE-EEcCCCchhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHHHHHHHHHHhC
Q 004972          475 IIKKVPV-VVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAF  551 (721)
Q Consensus       475 ~lG~~~v-~v~d~~gfi~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~  551 (721)
                      .++|.+| +++|.||||+||++.+++|||++++++|+ +++|||.++ .++|||+|||+++|.+|+|+++++++.+++.+
T Consensus         3 ~~~K~~v~~~~d~~gfi~nRll~~~~~eA~~ll~eGva~~~dID~a~~~g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~   82 (110)
T 3ctv_A            3 SKGRPQIDSSKATDKINPMDFTFVEINEAVKLVEMGVATPQDIDTAIKLGLNRPFGPFELAKQFGAEQIAKRLEELAKQF   82 (110)
T ss_dssp             --------------CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTTCSSCHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCcccCCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4688999 88999999999999999999999999997 999999999 89999999999999999999999999999988


Q ss_pred             CC-CCCCcHHHHHHHHcCCCCcccCcc
Q 004972          552 PD-RSFQSPLVDLLLKSGRNGKANGKG  577 (721)
Q Consensus       552 ~~-~~~~~~~l~~~v~~G~~G~k~g~G  577 (721)
                      ++ ++.|+++|++|+++|++|+|||+|
T Consensus        83 g~~~~~p~~~L~~~v~~G~lG~k~g~G  109 (110)
T 3ctv_A           83 GKKIFEPAKTLKEGKLEELLKAGKAEG  109 (110)
T ss_dssp             CCGGGSCCHHHHTTTHHHHHHHHHHC-
T ss_pred             CCCcCCCCHHHHHHHHcCCCCccCCCC
Confidence            87 555899999999999999999998

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=99.79  E-value=6.4e-20  Score=194.52  Aligned_cols=204  Identities=17%  Similarity=0.205  Sum_probs=160.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  384 (721)
                      +||+|||+|.||+++|..|+.+|+ +|++||++++.++.....+.....            ......++..+++++++++
T Consensus         5 ~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~------------~~~~~~~i~~t~d~~a~~~   72 (317)
T 2ewd_A            5 RKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMV------------MFGSTSKVIGTDDYADISG   72 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHH------------HHTCCCCEEEESCGGGGTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhh------------hcCCCcEEEECCCHHHhCC
Confidence            589999999999999999999999 999999999887753211111100            0011235777778888999


Q ss_pred             CCEEEEcc--------------cCChHHHHHHHHHHHhhCCCCeEE--EecCCCCCHHHHhcccCC-CCcEEEecCCCCC
Q 004972          385 VDMVIEAV--------------IESVPLKQKIFSELEKACPPHCIL--ATNTSTIDLNIVGEKTSS-QDRIIGAHFFSPA  447 (721)
Q Consensus       385 aDlVIeav--------------pe~~~~k~~v~~~l~~~~~~~~ii--~s~ts~~~i~~l~~~~~~-~~r~ig~h~~~p~  447 (721)
                      ||+||+|+              +++..+++++++++.++++ ++++  +||++.+....+.+.... |+|++|+      
T Consensus        73 aDiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~-~~iii~~sNp~~~~~~~~~~~~~~~~~rviG~------  145 (317)
T 2ewd_A           73 SDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCP-NAFVICITNPLDVMVSHFQKVSGLPHNKVCGM------  145 (317)
T ss_dssp             CSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEECCSSHHHHHHHHHHHHCCCGGGEEES------
T ss_pred             CCEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHHHhhCCCHHHEEec------
Confidence            99999999              7888999999999999975 7766  567666666666666655 6788875      


Q ss_pred             CCCCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhh---hhhHHHHHH-------HHHHHcCC-CHHHHH
Q 004972          448 HVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNR---AFFPYSQSA-------RLLVSLGV-DVFRID  516 (721)
Q Consensus       448 ~~~~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~gfi~nR---l~~~~~~Ea-------~~l~~~Gv-~~~~ID  516 (721)
                                  .|+.++......+.+.+|+.   .++.+||++||   .++++++++       ..++++|+ +++++|
T Consensus       146 ------------~t~ld~~r~~~~la~~lg~~---~~~v~~~v~g~Hg~~~~~~~~~a~v~g~~~~~~~~~g~~~~~~id  210 (317)
T 2ewd_A          146 ------------AGVLDSSRFRTFIAQHFGVN---ASDVSANVIGGHGDGMVPATSSVSVGGVPLSSFIKQGLITQEQID  210 (317)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHTSC---GGGEECCEEBCSSTTCEECGGGCEETTEEHHHHHHTTSSCHHHHH
T ss_pred             ------------cCcHHHHHHHHHHHHHhCcC---hhhceEEEEecCCCceeEEeeccccCCEEHHHHHhccCCCHHHHH
Confidence                        36788888888899999987   48999999999   889999998       88999985 999999


Q ss_pred             HHHHhcCCCccHHHHHHhhch-HHHHHHHH
Q 004972          517 SAIRSFGLPIGPFQLLDLAGY-GVAAATSK  545 (721)
Q Consensus       517 ~a~~~~G~p~Gpf~~~D~~Gl-d~~~~~~~  545 (721)
                      .++...  ++|||+++|..|. ++.+.+..
T Consensus       211 ~~~~~~--~~~~~ei~~~~g~g~~~~~~a~  238 (317)
T 2ewd_A          211 EIVCHT--RIAWKEVADNLKTGTAYFAPAA  238 (317)
T ss_dssp             HHHHHH--HHHHHHHHHHHSSSCCCHHHHH
T ss_pred             HHHHHH--HhhHHHHHHhhcCCchHHHHHH
Confidence            998433  7899999999887 55544433

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=99.79  E-value=4.5e-20  Score=210.51  Aligned_cols=166  Identities=20%  Similarity=0.229  Sum_probs=141.4

Q ss_pred             cCcEEEEEeCCCC-CCC--CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHH
Q 004972           12 NDGVAIITLINPP-VNA--LAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVE   88 (721)
Q Consensus        12 ~~~v~~i~l~~p~-~Na--l~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~   88 (721)
                      +++|++|++|+|. .|+  ++..+.++|.++|++++.|+++|+|||++.+    .|+|+....             ...+
T Consensus       300 ~~~VavI~l~g~i~~n~~~~~~~~~~~l~~~L~~a~~d~~vkaVVL~i~s----pGG~~~~~~-------------~i~~  362 (593)
T 3bf0_A          300 GDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNS----PGGSVTASE-------------VIRA  362 (593)
T ss_dssp             SCEEEEEEEEEEEESSSSCTTSEEHHHHHHHHHHHHHCTTEEEEEEEEEE----EEECHHHHH-------------HHHH
T ss_pred             CCCEEEEEEeeeecCCccccchhHHHHHHHHHHHHHhCCCCCEEEEEecC----CCCCHHHHH-------------HHHH
Confidence            5789999999994 677  6888999999999999999999999999873    578876421             1234


Q ss_pred             HHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCccc------------ccCcccc-------------
Q 004972           89 LVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPEL------------TLGVIPG-------------  143 (721)
Q Consensus        89 ~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~------------~~Gl~P~-------------  143 (721)
                      .+ +.+..++|||||+|+|.|.|||+.|+++||+|+|++++.||.+++            ++|+.|+             
T Consensus       363 ~i-~~l~~~~kPVia~v~g~AasgG~~iA~aaD~iva~p~a~~Gsigv~~~~~~~~~~~~klGi~~~~~~~g~~k~~~~~  441 (593)
T 3bf0_A          363 EL-AAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSIT  441 (593)
T ss_dssp             HH-HHHHHTTCCEEEEEEEEEETHHHHTTTTCSEEEECTTCEEECCCEEEEEEECHHHHHHTTCEEECCBSCGGGCCCTT
T ss_pred             HH-HHHHhCCCCEEEEECCChHHHHHHHHHhCCEEEECCCCEeecceeEEecCchHHHHHhcCceeeeeecccccccCcC
Confidence            45 557889999999999999999999999999999999999999985            5888752             


Q ss_pred             ---c---------------cccccccCHHH-----HHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHH
Q 004972          144 ---T---------------QRLPRLVGLSK-----AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWAL  195 (721)
Q Consensus       144 ---~---------------~~l~r~~G~~~-----a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~  195 (721)
                         +               .++.+.++..+     +.+++++|+.++|+||+++||||++++.+++.+++.+++.
T Consensus       442 ~~~t~~~~~~l~~~l~~~~~~f~~~V~~~Rg~~~~a~~~l~~G~~~ta~eA~~~GLVD~v~~~~~~~~~a~~~a~  516 (593)
T 3bf0_A          442 RALPPEAQLMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAK  516 (593)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHTTCTTCEEEHHHHHHHTSCSEECCHHHHHHHHHHHSC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCcCHHHHHHCCCCcCccCHHHHHHHHHHHcC
Confidence               1               45677888888     9999999999999999999999999998888887777543

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=99.78  E-value=2.2e-18  Score=179.25  Aligned_cols=189  Identities=15%  Similarity=0.087  Sum_probs=147.1

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCC---ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-c
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNI---YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  380 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~---~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  380 (721)
                      .+||+|||+|.||.+|+..|+++|+   +|++||+++++++...+.                      . .+..+++. +
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~----------------------~-gi~~~~~~~~   59 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEK----------------------C-GVHTTQDNRQ   59 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHT----------------------T-CCEEESCHHH
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHH----------------------c-CCEEeCChHH
Confidence            4689999999999999999999999   999999999987765321                      0 23444444 6


Q ss_pred             ccCCCCEEEEcccCChHHHHHHHHHHHhh-CCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEE-ecC
Q 004972          381 EFKDVDMVIEAVIESVPLKQKIFSELEKA-CPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEI-VRT  458 (721)
Q Consensus       381 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~-~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEi-v~~  458 (721)
                      .+++||+||+|||  ++.+.++++++.++ ++++++|+|++++++++.+...+..+.++++.||++|...+..+++ +++
T Consensus        60 ~~~~aDvVilav~--p~~~~~vl~~l~~~~l~~~~iiiS~~agi~~~~l~~~l~~~~~vvr~mPn~p~~v~~g~~~l~~~  137 (280)
T 3tri_A           60 GALNADVVVLAVK--PHQIKMVCEELKDILSETKILVISLAVGVTTPLIEKWLGKASRIVRAMPNTPSSVRAGATGLFAN  137 (280)
T ss_dssp             HHSSCSEEEECSC--GGGHHHHHHHHHHHHHTTTCEEEECCTTCCHHHHHHHHTCCSSEEEEECCGGGGGTCEEEEEECC
T ss_pred             HHhcCCeEEEEeC--HHHHHHHHHHHHhhccCCCeEEEEecCCCCHHHHHHHcCCCCeEEEEecCChHHhcCccEEEEeC
Confidence            7899999999998  78889999999998 8999899999999999999998888889999999999999988875 568


Q ss_pred             CCCCHHHHHHHHHHHHHcCCeeEEEcCCC--chh-----hhhhhhHHHHHHHH--HHHcCCCHHHHHHHH
Q 004972          459 ERTSAQVILDLMTVGKIIKKVPVVVGNCT--GFA-----VNRAFFPYSQSARL--LVSLGVDVFRIDSAI  519 (721)
Q Consensus       459 ~~t~~e~~~~~~~l~~~lG~~~v~v~d~~--gfi-----~nRl~~~~~~Ea~~--l~~~Gv~~~~ID~a~  519 (721)
                      +.++++.++.+.++++.+|+.+++..+..  .+.     ..-+++ ++.|++.  .+..|+++++.-+++
T Consensus       138 ~~~~~~~~~~v~~l~~~iG~~~~v~~E~~~d~~talsgsgpa~~~-~~~eal~~a~v~~Gl~~~~a~~l~  206 (280)
T 3tri_A          138 ETVDKDQKNLAESIMRAVGLVIWVSSEDQIEKIAALSGSGPAYIF-LIMEALQEAAEQLGLTKETAELLT  206 (280)
T ss_dssp             TTSCHHHHHHHHHHHGGGEEEEECSSHHHHHHHHHHTTSHHHHHH-HHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCeEEECCHHHhhHHHHHhccHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHH
Confidence            88999999999999999998554323310  000     011111 2234432  345688888776665

>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}

Probab=99.75  E-value=5.2e-18  Score=171.81  Aligned_cols=165  Identities=19%  Similarity=0.192  Sum_probs=124.8

Q ss_pred             cCcEEEEEeCCC-CCCC-----CC--HHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccc
Q 004972           12 NDGVAIITLINP-PVNA-----LA--IPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMP   83 (721)
Q Consensus        12 ~~~v~~i~l~~p-~~Na-----l~--~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~   83 (721)
                      +++|++|+++.+ ..+.     ++  .-..++|.++++++.+|+++|+|||++.    |.|+|+....            
T Consensus         2 ~~~iavi~i~G~I~~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~----s~Gg~~~~~~------------   65 (240)
T 3rst_A            2 SSKIAVLEVSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKDDKTVKGIVLKVN----SPGGGVYESA------------   65 (240)
T ss_dssp             CCEEEEEEEESCBCCC---------CCCCHHHHHHHHHHHHHCTTEEEEEEEEE----ECCBCHHHHH------------
T ss_pred             CCeEEEEEEEEEEcCCCCcCcccccCCcCHHHHHHHHHHHHhCCCcEEEEEEec----CCCCCHHHHH------------
Confidence            578999999877 2221     11  0135899999999999999999999986    6788886532            


Q ss_pred             hHHHHHHHHHHhh-CCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCc---------------------ccccCcc
Q 004972           84 DVSVELVVNLIED-CKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLP---------------------ELTLGVI  141 (721)
Q Consensus        84 ~~~~~~~~~~l~~-~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~p---------------------e~~~Gl~  141 (721)
                       ...+.+ +.+.. ++|||||+++|.|.|||++|+++||+|++++++.|+++                     +++.|..
T Consensus        66 -~i~~~l-~~~~~~~~kPVia~v~g~a~~gG~~lA~a~D~i~a~~~a~~g~~Gv~~~~~~~~~~l~k~Gi~~~~~~~G~~  143 (240)
T 3rst_A           66 -EIHKKL-EEIKKETKKPIYVSMGSMAASGGYYISTAADKIFATPETLTGSLGVIMESVNYSKLADKLGISFETIKSGAH  143 (240)
T ss_dssp             -HHHHHH-HHHHHHHCCCEEEEEEEEEETHHHHHHTTSSEEEECTTCEEECCCCEEEEEECHHHHHHHTCEEEEEESSTT
T ss_pred             -HHHHHH-HHHHHhCCCeEEEEECCeehHhHHHHHHhCCeeEECCCCeEeccceeeEecCHHHHHHHcCCeEEEEecccc
Confidence             123444 44666 89999999999999999999999999999999999999                     4445544


Q ss_pred             cc--cc---------------------------ccccccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHH
Q 004972          142 PG--TQ---------------------------RLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRL  192 (721)
Q Consensus       142 P~--~~---------------------------~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~  192 (721)
                      ++  ..                           ...|.+......+ +++|+.+++++|+++||||++.+.+++.+.+.+
T Consensus       144 k~~~~p~~~~s~~~~~~~~~~l~~~~~~f~~~Va~~R~l~~~~~~~-~~~g~~~~a~~A~~~GLVD~i~~~~~~~~~~~~  222 (240)
T 3rst_A          144 ADIMSPSREMTKEEKNIMQSMVDNSYEGFVDVISKGRGMPKAEVKK-IADGRVYDGRQAKKLNLVDELGFYDDTITAMKK  222 (240)
T ss_dssp             TTTTCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHH-HCSSCEEEHHHHHHTTSSSEECCHHHHHHHHHH
T ss_pred             ccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH-HhcCCcccHHHHHHcCCCcccCCHHHHHHHHHH
Confidence            43  11                           1123345444444 789999999999999999999998887777766


Q ss_pred             HHH
Q 004972          193 WAL  195 (721)
Q Consensus       193 ~a~  195 (721)
                      ++.
T Consensus       223 ~~~  225 (240)
T 3rst_A          223 DHK  225 (240)
T ss_dssp             HCG
T ss_pred             HhC
Confidence            553

>3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304}

Probab=99.75  E-value=9.6e-19  Score=154.88  Aligned_cols=85  Identities=27%  Similarity=0.437  Sum_probs=79.6

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCC-CCCCC
Q 004972          616 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPS  694 (721)
Q Consensus       616 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~  694 (721)
                      ++++|.||++.+++|||++|++|||+ +++|||.+|++|+|||+   |||+++|.+|+|.++++++.+.+.+++ +|+|+
T Consensus        15 ~~gfi~nRll~~~~~eA~~ll~eGva-~~~dID~a~~~g~G~p~---GPf~~~D~~Gld~~~~~~~~l~~~~g~~~~~p~   90 (110)
T 3ctv_A           15 TDKINPMDFTFVEINEAVKLVEMGVA-TPQDIDTAIKLGLNRPF---GPFELAKQFGAEQIAKRLEELAKQFGKKIFEPA   90 (110)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHTTCSS---CHHHHHHHHCHHHHHHHHHHHHHHHCCGGGSCC
T ss_pred             CccHHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHcCCCCc---cHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCC
Confidence            57899999999999999999999999 99999999999999999   999999999999999999999999998 89999


Q ss_pred             HHHHHHHHcC
Q 004972          695 RFLEERATKG  704 (721)
Q Consensus       695 ~~l~~~~~~g  704 (721)
                      ++|++|+++|
T Consensus        91 ~~L~~~v~~G  100 (110)
T 3ctv_A           91 KTLKEGKLEE  100 (110)
T ss_dssp             HHHHTTTHHH
T ss_pred             HHHHHHHHcC
Confidence            9999999543

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=99.74  E-value=9.2e-18  Score=173.51  Aligned_cols=211  Identities=10%  Similarity=0.026  Sum_probs=156.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCc-eEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  383 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~-V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  383 (721)
                      +||+|||+|.||..+|..|++.|++ |++||++++.++...+.+                       .+..++++ +.++
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~-----------------------g~~~~~~~~~~~~   67 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKV-----------------------EAEYTTDLAEVNP   67 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHT-----------------------TCEEESCGGGSCS
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHc-----------------------CCceeCCHHHHhc
Confidence            5899999999999999999999999 999999999876643210                       13345555 5678


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCC-----CCCCeeEEecC
Q 004972          384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA-----HVMPLLEIVRT  458 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~-----~~~~lvEiv~~  458 (721)
                      +||+||+|+|++  ...+++.++.+.++++++|++++++.+.+.+.+.+..   .-..|+++|.     ..++.++++. 
T Consensus        68 ~~Dvvi~av~~~--~~~~v~~~l~~~~~~~~ivv~~s~~~~~~~l~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~v-  141 (266)
T 3d1l_A           68 YAKLYIVSLKDS--AFAELLQGIVEGKREEALMVHTAGSIPMNVWEGHVPH---YGVFYPMQTFSKQREVDFKEIPFFI-  141 (266)
T ss_dssp             CCSEEEECCCHH--HHHHHHHHHHTTCCTTCEEEECCTTSCGGGSTTTCSS---EEEEEECCCC---CCCCCTTCCEEE-
T ss_pred             CCCEEEEecCHH--HHHHHHHHHHhhcCCCcEEEECCCCCchHHHHHHHHh---ccCcCCceecCCCchhhcCCCeEEE-
Confidence            999999999944  4588889998888899999999999988776655543   2235776652     2233344333 


Q ss_pred             CCCCHHHHHHHHHHHHHcCCeeEEEcCC--Cch-----hhhhhh--hHHHHHHHHHHHcCCCHHHHHHHH-Hh------c
Q 004972          459 ERTSAQVILDLMTVGKIIKKVPVVVGNC--TGF-----AVNRAF--FPYSQSARLLVSLGVDVFRIDSAI-RS------F  522 (721)
Q Consensus       459 ~~t~~e~~~~~~~l~~~lG~~~v~v~d~--~gf-----i~nRl~--~~~~~Ea~~l~~~Gv~~~~ID~a~-~~------~  522 (721)
                      ..++++.++.+.++++.+|+.++++++.  +++     ++|++.  ...+.|++. .+.|++++++..++ ..      .
T Consensus       142 ~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~eal~-~~~Gl~~~~~~~l~~~~~~~~~~~  220 (266)
T 3d1l_A          142 EASSTEDAAFLKAIASTLSNRVYDADSEQRKSLHLAAVFTCNFTNHMYALAAELL-KKYNLPFDVMLPLIDETARKVHEL  220 (266)
T ss_dssp             EESSHHHHHHHHHHHHTTCSCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTCCGGGGHHHHHHHHHHHHHS
T ss_pred             ecCCHHHHHHHHHHHHhcCCcEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHhc
Confidence            2358999999999999999999999764  356     777775  334456632 35699988875544 21      2


Q ss_pred             ---CCCccHHHHHHhhchHHHHHHHHH
Q 004972          523 ---GLPIGPFQLLDLAGYGVAAATSKE  546 (721)
Q Consensus       523 ---G~p~Gpf~~~D~~Gld~~~~~~~~  546 (721)
                         +.++||+...|..|++.....++.
T Consensus       221 ~~~~~~~GP~~r~d~~~l~~~l~~l~~  247 (266)
T 3d1l_A          221 EPKTAQTGPAIRYDENVIGNHLRMLAD  247 (266)
T ss_dssp             CHHHHCCSTTTTTCHHHHHHHHHHTTT
T ss_pred             ChhhhCCCCCccCCHHHHHHHHHHHhc
Confidence               346799999999999998877654

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=99.71  E-value=6.2e-17  Score=165.38  Aligned_cols=188  Identities=16%  Similarity=0.175  Sum_probs=144.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC----ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-c
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  380 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  380 (721)
                      +||+|||+|.||.+++..|+++|+    +|++||+++++++...+..                       .+..+++. +
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~-----------------------g~~~~~~~~e   59 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKY-----------------------GLTTTTDNNE   59 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHH-----------------------CCEECSCHHH
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHh-----------------------CCEEeCChHH
Confidence            589999999999999999999998    9999999999877653210                       23344454 5


Q ss_pred             ccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCC-eeEEecCC
Q 004972          381 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMP-LLEIVRTE  459 (721)
Q Consensus       381 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~-lvEiv~~~  459 (721)
                      .+++||+||+|||  +....++++++.++++++++|+|.++++++..+...+..+.++++.||+.|..... ...+++++
T Consensus        60 ~~~~aDvVilav~--~~~~~~v~~~l~~~l~~~~~vvs~~~gi~~~~l~~~~~~~~~~v~~~p~~p~~~~~g~~~~~~~~  137 (247)
T 3gt0_A           60 VAKNADILILSIK--PDLYASIINEIKEIIKNDAIIVTIAAGKSIESTENAFNKKVKVVRVMPNTPALVGEGMSALCPNE  137 (247)
T ss_dssp             HHHHCSEEEECSC--TTTHHHHC---CCSSCTTCEEEECSCCSCHHHHHHHHCSCCEEEEEECCGGGGGTCEEEEEEECT
T ss_pred             HHHhCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEecCCCCHHHHHHHhCCCCcEEEEeCChHHHHcCceEEEEeCC
Confidence            6788999999997  77788999999998999999999999999998888877777899999999998887 56677888


Q ss_pred             CCCHHHHHHHHHHHHHcCCeeEEEcCCC-----chhhh-hhhhHHHHHHHHH--HHcCCCHHHHHHHH
Q 004972          460 RTSAQVILDLMTVGKIIKKVPVVVGNCT-----GFAVN-RAFFPYSQSARLL--VSLGVDVFRIDSAI  519 (721)
Q Consensus       460 ~t~~e~~~~~~~l~~~lG~~~v~v~d~~-----gfi~n-Rl~~~~~~Ea~~l--~~~Gv~~~~ID~a~  519 (721)
                      .++++.++.++++++.+|+ ++++.+..     +.... ..+..++.|++..  ...|+++++..+++
T Consensus       138 ~~~~~~~~~~~~l~~~~G~-~~~~~e~~~d~~~a~~g~gpa~~~~~~eal~~a~~~~Gl~~~~a~~~~  204 (247)
T 3gt0_A          138 MVTEKDLEDVLNIFNSFGQ-TEIVSEKLMDVVTSVSGSSPAYVYMIIEAMADAAVLDGMPRNQAYKFA  204 (247)
T ss_dssp             TCCHHHHHHHHHHHGGGEE-EEECCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhCCC-EEEeCHHHccHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            8999999999999999998 55554321     11100 1122234466544  35599999888887

>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A

Probab=99.71  E-value=4.8e-17  Score=161.96  Aligned_cols=145  Identities=24%  Similarity=0.335  Sum_probs=123.2

Q ss_pred             cCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHH
Q 004972           12 NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVV   91 (721)
Q Consensus        12 ~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~   91 (721)
                      .+.|++|++++    +++..+.+.|.++++.+++ +++++|||+..    |.|+|+...                ..++ 
T Consensus         7 ~~~V~vI~i~g----~I~~~~~~~l~~~l~~a~~-~~~~~Ivl~in----spGG~v~~~----------------~~i~-   60 (230)
T 3viv_A            7 KNIVYVAQIKG----QITSYTYDQFDRYITIAEQ-DNAEAIIIELD----TPGGRADAM----------------MNIV-   60 (230)
T ss_dssp             CCEEEEEEEES----CBCHHHHHHHHHHHHHHHH-TTCSEEEEEEE----BSCEEHHHH----------------HHHH-
T ss_pred             CCeEEEEEEeC----EECHHHHHHHHHHHHHHhc-CCCCEEEEEEe----CCCcCHHHH----------------HHHH-
Confidence            46799999985    6999999999999999986 46999999875    778876532                2445 


Q ss_pred             HHHhhCCCcEEEEE---CCcccccchHhhhhcCEEEeeCCceEeCcccccCccc--c-c---------------cccccc
Q 004972           92 NLIEDCKKPIVAAV---EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIP--G-T---------------QRLPRL  150 (721)
Q Consensus        92 ~~l~~~~~p~Iaav---~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P--~-~---------------~~l~r~  150 (721)
                      +.|..+++|||++|   +|.|.|+|+.|+++||+|+|+++++|+.++...+. |  | +               ..+++.
T Consensus        61 ~~i~~~~~PVia~v~p~~G~AasaG~~ia~a~d~~~a~p~a~ig~~~p~~~~-~~~G~~~~~~~k~~~~~~~~~~~la~~  139 (230)
T 3viv_A           61 QRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGY-SQNGSIIEAPPAITNYFIAYIKSLAQE  139 (230)
T ss_dssp             HHHHTCSSCEEEEECSTTCEEETHHHHHHHTSSEEEECTTCEEECCCEEEEE-CTTSCEEECCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCEEEEEecCCCEEhHHHHHHHHhcCceeECCCCEEEeccceecC-CCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence            66889999999999   99999999999999999999999999999987421 2  1 1               136677


Q ss_pred             cCH--HHHHHHHHcCCCcCHHHHHHcCCccEEcCC
Q 004972          151 VGL--SKAIEMMLLSKSITSEEGWKLGLIDAVVTS  183 (721)
Q Consensus       151 ~G~--~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~  183 (721)
                      .|.  ..+.+++.+++.++|+||+++||||+|++.
T Consensus       140 ~Gr~~~~a~~~~~~~~~ltA~EAle~GliD~V~~~  174 (230)
T 3viv_A          140 SGRNATIAEEFITKDLSLTPEEALKYGVIEVVARD  174 (230)
T ss_dssp             TTCCHHHHHHHHHTCCEECHHHHHHTTSCSEECSS
T ss_pred             hCcCHHHHHHHHhcCCeecHHHHHHcCCceEecCC
Confidence            885  789999999999999999999999999975

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=99.70  E-value=2.8e-16  Score=165.85  Aligned_cols=166  Identities=15%  Similarity=0.153  Sum_probs=129.7

Q ss_pred             CCceeEEEEcCCCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-
Q 004972          303 RGVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  379 (721)
Q Consensus       303 ~~~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-  379 (721)
                      +.++||+|||+|.||+++|..|+++|+  +|++||++++.++.+.           +.|.+           ...++++ 
T Consensus        31 ~~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~-----------~~G~~-----------~~~~~~~~   88 (314)
T 3ggo_A           31 LSMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV-----------DLGII-----------DEGTTSIA   88 (314)
T ss_dssp             CSCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH-----------HTTSC-----------SEEESCTT
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-----------HCCCc-----------chhcCCHH
Confidence            346799999999999999999999999  9999999998877642           22211           1234555 


Q ss_pred             c-ccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCC--HHHHhcccCCCCcEEEecCCCCCC--------
Q 004972          380 S-EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAH--------  448 (721)
Q Consensus       380 ~-~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--i~~l~~~~~~~~r~ig~h~~~p~~--------  448 (721)
                      + .+++||+||+|||  .....++++++.+.++++++|++.+|+..  +..+.+.++  .+|++.||+.++.        
T Consensus        89 ~~~~~~aDvVilavp--~~~~~~vl~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~--~~~v~~hPm~G~e~sG~~~A~  164 (314)
T 3ggo_A           89 KVEDFSPDFVMLSSP--VRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILG--KRFVGGHPIAGTEKSGVEYSL  164 (314)
T ss_dssp             GGGGGCCSEEEECSC--GGGHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHG--GGEECEEECCCCCCCSGGGCC
T ss_pred             HHhhccCCEEEEeCC--HHHHHHHHHHHhhccCCCcEEEECCCCcHHHHHHHHHhcC--CCEEecCcccCCcccchhhhh
Confidence            4 6899999999999  55677899999999999999998777643  445555443  2899999988653        


Q ss_pred             ----CCCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC-CCchhhhhh
Q 004972          449 ----VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTGFAVNRA  494 (721)
Q Consensus       449 ----~~~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d-~~gfi~nRl  494 (721)
                          .+..+.+++++.++++.++.+.++++.+|+.++++++ ....++..+
T Consensus       165 ~~Lf~g~~~il~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~~hD~~~a~~  215 (314)
T 3ggo_A          165 DNLYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEYMSPELHDYVFGVV  215 (314)
T ss_dssp             TTTTTTCEEEECCCTTSCHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHH
T ss_pred             hhhhcCCEEEEEeCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHH
Confidence                3567888889889999999999999999999998853 444444443

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=99.69  E-value=6.2e-17  Score=169.46  Aligned_cols=188  Identities=15%  Similarity=0.166  Sum_probs=133.0

Q ss_pred             CceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc
Q 004972          304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  382 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  382 (721)
                      .|+||+|||+|.||.+||.+|+++||+|++||+++++++...           +.|             ....+++ +.+
T Consensus         2 ~M~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~-----------~~G-------------a~~a~s~~e~~   57 (300)
T 3obb_A            2 HMKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLV-----------AAG-------------ASAARSARDAV   57 (300)
T ss_dssp             -CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHH-----------HTT-------------CEECSSHHHHH
T ss_pred             CcCEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHH-----------HcC-------------CEEcCCHHHHH
Confidence            368999999999999999999999999999999999877642           222             3344555 667


Q ss_pred             CCCCEEEEcccCChHHHHHHHH--HHHhhCCCCeEEEecCCCCCHH---HHhcccCCCCcEEEecCCCCCCC--------
Q 004972          383 KDVDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHV--------  449 (721)
Q Consensus       383 ~~aDlVIeavpe~~~~k~~v~~--~l~~~~~~~~ii~s~ts~~~i~---~l~~~~~~~~r~ig~h~~~p~~~--------  449 (721)
                      ++||+||.|+|.+..+...++.  .+.+.++++++|++.++ ..+.   ++++.+...    |++|.+.|-.        
T Consensus        58 ~~~dvv~~~l~~~~~v~~V~~~~~g~~~~~~~g~iiId~sT-~~p~~~~~~a~~~~~~----G~~~lDaPVsGg~~~A~~  132 (300)
T 3obb_A           58 QGADVVISMLPASQHVEGLYLDDDGLLAHIAPGTLVLECST-IAPTSARKIHAAARER----GLAMLDAPVSGGTAGAAA  132 (300)
T ss_dssp             TTCSEEEECCSCHHHHHHHHHSSSSSTTSCCC-CEEEECSC-CCHHHHHHHHHHHHTT----TCEEEECCEESCHHHHHH
T ss_pred             hcCCceeecCCchHHHHHHHhchhhhhhcCCCCCEEEECCC-CCHHHHHHHHHHHHHc----CCEEEecCCCCCHHHHHh
Confidence            9999999999966665544443  26667788888876444 4443   344444322    5666654422        


Q ss_pred             CCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCC-c---hhhhhhhhH----HHHHHHHHHHc-CCCHHHHHHHH-
Q 004972          450 MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCT-G---FAVNRAFFP----YSQSARLLVSL-GVDVFRIDSAI-  519 (721)
Q Consensus       450 ~~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~-g---fi~nRl~~~----~~~Ea~~l~~~-Gv~~~~ID~a~-  519 (721)
                      +.+.-++.|   +++++++++++++.+|+.++++++.. |   -++|.++..    .+.|++.+.+. |++++.+-.++ 
T Consensus       133 G~L~imvGG---~~~~~~~~~p~l~~~g~~i~~~G~~G~g~~~Kl~~N~l~~~~~~a~aEa~~la~~~Gld~~~~~~vl~  209 (300)
T 3obb_A          133 GTLTFMVGG---DAEALEKARPLFEAMGRNIFHAGPDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMR  209 (300)
T ss_dssp             TCEEEEEES---CHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             CCEEEEEeC---CHHHHHHHHHHHHHhCCCEEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            223444455   78999999999999999999998732 1   244554332    24599999987 99999999888 


Q ss_pred             HhcC
Q 004972          520 RSFG  523 (721)
Q Consensus       520 ~~~G  523 (721)
                      .+.+
T Consensus       210 ~~~~  213 (300)
T 3obb_A          210 RSSG  213 (300)
T ss_dssp             TSTT
T ss_pred             hCcc
Confidence            4443

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=99.67  E-value=8.4e-17  Score=170.03  Aligned_cols=191  Identities=11%  Similarity=0.079  Sum_probs=135.6

Q ss_pred             CCceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cc
Q 004972          303 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  381 (721)
Q Consensus       303 ~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  381 (721)
                      ..|+||+|||+|.||.++|..|+++|++|++||+++++++.+.+           .             .+..++++ +.
T Consensus        19 ~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~-----------~-------------g~~~~~~~~~~   74 (310)
T 3doj_A           19 SHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVE-----------H-------------GASVCESPAEV   74 (310)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHH-----------T-------------TCEECSSHHHH
T ss_pred             ccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH-----------C-------------CCeEcCCHHHH
Confidence            45789999999999999999999999999999999998776421           1             23445555 56


Q ss_pred             cCCCCEEEEcccCChHHHHHHH--HHHHhhCCCCeEEEecCCCCCHH--HHhcccC-CCCcEEEecCCCCC----CCCCe
Q 004972          382 FKDVDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA----HVMPL  452 (721)
Q Consensus       382 l~~aDlVIeavpe~~~~k~~v~--~~l~~~~~~~~ii~s~ts~~~i~--~l~~~~~-~~~r~ig~h~~~p~----~~~~l  452 (721)
                      +++||+||+|||++..++..++  .++.+.++++++|++.++..+..  .+.+.+. ....|+. ||....    ..+.+
T Consensus        75 ~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~v~-~pv~g~~~~a~~g~l  153 (310)
T 3doj_A           75 IKKCKYTIAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVE-GPVSGSKKPAEDGQL  153 (310)
T ss_dssp             HHHCSEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE-CCEECCHHHHHHTCE
T ss_pred             HHhCCEEEEEcCCHHHHHHHHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEe-CCCCCChhHHhcCCe
Confidence            7899999999996655554433  66778888998887655433322  3333332 2233444 332111    12234


Q ss_pred             eEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCc------hhhhhhh---hHHHHHHHHHHHc-CCCHHHHHHHH-Hh
Q 004972          453 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG------FAVNRAF---FPYSQSARLLVSL-GVDVFRIDSAI-RS  521 (721)
Q Consensus       453 vEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~g------fi~nRl~---~~~~~Ea~~l~~~-Gv~~~~ID~a~-~~  521 (721)
                      ..++.+   ++++++.+.++++.+|+.++++++ +|      ++.|.++   ...++|++.+++. |++++++..++ .+
T Consensus       154 ~i~~gg---~~~~~~~~~~ll~~~g~~~~~~g~-~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~  229 (310)
T 3doj_A          154 IILAAG---DKALFEESIPAFDVLGKRSFYLGQ-VGNGAKMKLIVNMIMGSMMNAFSEGLVLADKSGLSSDTLLDILDLG  229 (310)
T ss_dssp             EEEEEE---CHHHHHHHHHHHHHHEEEEEECSS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred             EEEEcC---CHHHHHHHHHHHHHhCCCEEEeCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence            445555   589999999999999999999987 55      5556554   3457899999987 99999999998 54


Q ss_pred             c
Q 004972          522 F  522 (721)
Q Consensus       522 ~  522 (721)
                      .
T Consensus       230 ~  230 (310)
T 3doj_A          230 A  230 (310)
T ss_dssp             T
T ss_pred             c
Confidence            3

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=99.66  E-value=1e-16  Score=169.36  Aligned_cols=189  Identities=13%  Similarity=0.067  Sum_probs=127.5

Q ss_pred             CCCceeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCC--HHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccC
Q 004972          302 PRGVRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN--SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD  378 (721)
Q Consensus       302 ~~~~~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  378 (721)
                      .+.++||+|||+|.||.+||..|+++|+ +|++||++  ++..+.+.           +.             .+..+++
T Consensus        21 ~~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~-----------~~-------------g~~~~~~   76 (312)
T 3qsg_A           21 QSNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAE-----------EL-------------GVSCKAS   76 (312)
T ss_dssp             ----CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHH-----------HT-------------TCEECSC
T ss_pred             cCCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHH-----------HC-------------CCEEeCC
Confidence            3456899999999999999999999999 99999997  45544431           11             2344555


Q ss_pred             c-cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH--HHhcccC-C--CCcEEEecCCCCC--CCC
Q 004972          379 Y-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-S--QDRIIGAHFFSPA--HVM  450 (721)
Q Consensus       379 ~-~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~--~l~~~~~-~--~~r~ig~h~~~p~--~~~  450 (721)
                      . +.+++||+||+|||++...  +++.++.+.++++++|++.+|..+.+  .+...+. .  ..+|+....+.|+  ...
T Consensus        77 ~~e~~~~aDvVi~~vp~~~~~--~~~~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd~pv~g~~~~~~g  154 (312)
T 3qsg_A           77 VAEVAGECDVIFSLVTAQAAL--EVAQQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAAVAVMSAVKPHGH  154 (312)
T ss_dssp             HHHHHHHCSEEEECSCTTTHH--HHHHHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEEEEECSCSTTTGG
T ss_pred             HHHHHhcCCEEEEecCchhHH--HHHHhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEeccccCCchhhcC
Confidence            5 5678999999999966654  46788999999999998766654433  2222221 1  2234332112211  122


Q ss_pred             CeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCch-----hhhhhhh----HHHHHHHHHHHc-CCCHHHHHHHH-
Q 004972          451 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGF-----AVNRAFF----PYSQSARLLVSL-GVDVFRIDSAI-  519 (721)
Q Consensus       451 ~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~gf-----i~nRl~~----~~~~Ea~~l~~~-Gv~~~~ID~a~-  519 (721)
                      .+..++.++.+     +.++++++.+|+.++++++.+|.     ++|..+.    ..++|++.+.+. |++++-++ ++ 
T Consensus       155 ~l~i~vgg~~~-----~~~~~ll~~~g~~~~~~g~~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~-~l~  228 (312)
T 3qsg_A          155 RVPLVVDGDGA-----RRFQAAFTLYGCRIEVLDGEVGGAALLKMCRSAVLKGLEALFLEALAAAEKMGLADRVLA-SLD  228 (312)
T ss_dssp             GSEEEEESTTH-----HHHHHHHHTTTCEEEECCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHH-HHH
T ss_pred             CEEEEecCChH-----HHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHH
Confidence            55667777532     88999999999999999876662     4444443    567899998887 99985554 45 


Q ss_pred             Hhc
Q 004972          520 RSF  522 (721)
Q Consensus       520 ~~~  522 (721)
                      .++
T Consensus       229 ~~~  231 (312)
T 3qsg_A          229 ASF  231 (312)
T ss_dssp             HHS
T ss_pred             hcC
Confidence            443

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=99.65  E-value=3.9e-16  Score=163.78  Aligned_cols=184  Identities=19%  Similarity=0.170  Sum_probs=132.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      +||+|||+|.||.++|..|+++|++|++||+++++++.+.+           .             .+..++++ +.++ 
T Consensus        16 ~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~-----------~-------------g~~~~~~~~~~~~-   70 (296)
T 3qha_A           16 LKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAE-----------A-------------GATLADSVADVAA-   70 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHH-----------T-------------TCEECSSHHHHTT-
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH-----------C-------------CCEEcCCHHHHHh-
Confidence            58999999999999999999999999999999998776432           1             24556666 4466 


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH--HHhcccC-CCCcEEEecCCCCC---CCCCeeEEecC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLLEIVRT  458 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~--~l~~~~~-~~~r~ig~h~~~p~---~~~~lvEiv~~  458 (721)
                      ||+||+|||++..+ +.++.++.+.++++++|++.++..+.+  ++.+.+. ...+|+....+.++   ..+.+..++.+
T Consensus        71 aDvvi~~vp~~~~~-~~v~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg  149 (296)
T 3qha_A           71 ADLIHITVLDDAQV-REVVGELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAPVSGGAAAAARGELATMVGA  149 (296)
T ss_dssp             SSEEEECCSSHHHH-HHHHHHHHTTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEEEECCEESCHHHHHHTCEEEEEEC
T ss_pred             CCEEEEECCChHHH-HHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHHHHhcCCccEEecC
Confidence            99999999965554 456688988899999887655543322  3333332 22234432222211   12344555555


Q ss_pred             CCCCHHHHHHHHHHHHHcCCeeEEEcCCCc------hhhhhhhh---HHHHHHHHHHHc-CCCHHHH------HHHH
Q 004972          459 ERTSAQVILDLMTVGKIIKKVPVVVGNCTG------FAVNRAFF---PYSQSARLLVSL-GVDVFRI------DSAI  519 (721)
Q Consensus       459 ~~t~~e~~~~~~~l~~~lG~~~v~v~d~~g------fi~nRl~~---~~~~Ea~~l~~~-Gv~~~~I------D~a~  519 (721)
                         ++++++.++++++.+|+.++++++ +|      ++.|.+..   ..++|++.+++. |++++++      ..++
T Consensus       150 ---~~~~~~~~~~ll~~~g~~~~~~g~-~g~a~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~i  222 (296)
T 3qha_A          150 ---DREVYERIKPAFKHWAAVVIHAGE-PGAGTRMKLARNMLTFTSYAAACEAMKLAEAAGLDLQALGRVVRHTDAL  222 (296)
T ss_dssp             ---CHHHHHHHHHHHHHHEEEEEEEES-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             ---CHHHHHHHHHHHHHHcCCeEEcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhhcchHHHH
Confidence               689999999999999999999976 45      45555543   347899999987 9999999      7777

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=99.64  E-value=1.5e-15  Score=159.84  Aligned_cols=191  Identities=13%  Similarity=0.117  Sum_probs=133.6

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  383 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  383 (721)
                      .+||+|||+|.||.++|..|+++|++|++||+++++++...+           .|            ....++++ +.++
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g------------~~~~~~~~~e~~~   63 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLA-----------EG------------ACGAAASAREFAG   63 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TT------------CSEEESSSTTTTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH-----------cC------------CccccCCHHHHHh
Confidence            468999999999999999999999999999999998776432           12            12224444 6679


Q ss_pred             CCCEEEEcccCChHHHHHHH--HHHHhhCCCCeEEEecCCCCCH--HHHhcccC-CCCcEEEecCCCC-C---CCCCeeE
Q 004972          384 DVDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDL--NIVGEKTS-SQDRIIGAHFFSP-A---HVMPLLE  454 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~--~~l~~~~~~~~ii~s~ts~~~i--~~l~~~~~-~~~r~ig~h~~~p-~---~~~~lvE  454 (721)
                      +||+||+|||++..++..++  +++.+.++++++|++.++..+.  ..+.+.+. ....|+. ||... +   ....++.
T Consensus        64 ~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a~~g~l~~  142 (303)
T 3g0o_A           64 VVDALVILVVNAAQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLD-APVSGGAVKAAQGEMTV  142 (303)
T ss_dssp             TCSEEEECCSSHHHHHHHHC--CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEE-CCEESCHHHHHTTCEEE
T ss_pred             cCCEEEEECCCHHHHHHHHhChhhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCeEEe-CCCCCChhhhhcCCeEE
Confidence            99999999996555544433  6677888899988765543332  23333332 2234554 44221 1   1123344


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCc------hhhhhhh---hHHHHHHHHHHHc-CCCHHHHHHHH-Hhc
Q 004972          455 IVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG------FAVNRAF---FPYSQSARLLVSL-GVDVFRIDSAI-RSF  522 (721)
Q Consensus       455 iv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~g------fi~nRl~---~~~~~Ea~~l~~~-Gv~~~~ID~a~-~~~  522 (721)
                      ++.+   ++++++.++++++.+|+.++++++.+|      ++.|-+.   ...++|++.+++. |++++++..++ .+.
T Consensus       143 ~~gg---~~~~~~~~~~ll~~~g~~~~~~~~~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~  218 (303)
T 3g0o_A          143 MASG---SEAAFTRLKPVLDAVASNVYRISDTPGAGSTVKIIHQLLAGVHIAAAAEAMALAARAGIPLDVMYDVVTHAA  218 (303)
T ss_dssp             EEEC---CHHHHHHHHHHHHHHEEEEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTST
T ss_pred             EeCC---CHHHHHHHHHHHHHHCCCEEECCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence            4444   689999999999999999999987555      2344442   3457899998877 99999999998 543

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=99.64  E-value=2.8e-16  Score=163.18  Aligned_cols=210  Identities=10%  Similarity=-0.030  Sum_probs=140.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCce-EEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  383 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V-~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  383 (721)
                      +||+|||+|.||.+++..|+++ ++| .+||++++.++.+.+.                      .+.  .++++ +.++
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~----------------------~g~--~~~~~~~~~~   57 (276)
T 2i76_A            3 LVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEV----------------------YGG--KAATLEKHPE   57 (276)
T ss_dssp             -CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHH----------------------TCC--CCCSSCCCCC
T ss_pred             ceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHH----------------------cCC--ccCCHHHHHh
Confidence            5899999999999999999888 999 5999999887664221                      111  34455 4578


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecC----CCCCC-CCCeeEEecC
Q 004972          384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHF----FSPAH-VMPLLEIVRT  458 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~----~~p~~-~~~lvEiv~~  458 (721)
                      +||+||+|+|++.  ..+++.++.   .++++|++.+++.+.+.+...     .+.+.|+    .+++. .....++...
T Consensus        58 ~~DvVilav~~~~--~~~v~~~l~---~~~~ivi~~s~~~~~~~l~~~-----~~~~~~p~~~~~g~~~~~~~~~~~~~~  127 (276)
T 2i76_A           58 LNGVVFVIVPDRY--IKTVANHLN---LGDAVLVHCSGFLSSEIFKKS-----GRASIHPNFSFSSLEKALEMKDQIVFG  127 (276)
T ss_dssp             ---CEEECSCTTT--HHHHHTTTC---CSSCCEEECCSSSCGGGGCSS-----SEEEEEECSCC--CTTGGGCGGGCCEE
T ss_pred             cCCEEEEeCChHH--HHHHHHHhc---cCCCEEEECCCCCcHHHHHHh-----hccccchhhhcCCCchhHHHhCCCeEE
Confidence            9999999999554  567776664   577888776656677655433     4566774    34232 1112222222


Q ss_pred             CCCCHHHHHHHHHHHHHcCCeeEEEcCC--C------chhhhhhhhHHHHHHHHHHHc-CCCHH----------HHHHHH
Q 004972          459 ERTSAQVILDLMTVGKIIKKVPVVVGNC--T------GFAVNRAFFPYSQSARLLVSL-GVDVF----------RIDSAI  519 (721)
Q Consensus       459 ~~t~~e~~~~~~~l~~~lG~~~v~v~d~--~------gfi~nRl~~~~~~Ea~~l~~~-Gv~~~----------~ID~a~  519 (721)
                      ..++++.++.++++++.+|+.++++++.  +      ++..| .+..++.|+..+++. |++.+          .++.++
T Consensus       128 ~~~~~~~~~~~~~l~~~lG~~~~~v~~~~~~~~~~~~~l~~n-~~~~~~~~a~~~~~~~Gl~~~~a~~~~l~~~~~~~~~  206 (276)
T 2i76_A          128 LEGDERGLPIVKKIAEEISGKYFVIPSEKKKAYHLAAVIASN-FPVALAYLSKRIYTLLGLDEPELLIHTLMKGVADNIK  206 (276)
T ss_dssp             ECCCTTTHHHHHHHHHHHCSCEEECCGGGHHHHHHHHHHHHT-THHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             EEeChHHHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence            2235667999999999999999998742  1      34444 666677888888874 99554          566666


Q ss_pred             -Hh-cCCCccHHHHHHhhchHHHHHHHHHHHHhC
Q 004972          520 -RS-FGLPIGPFQLLDLAGYGVAAATSKEFDKAF  551 (721)
Q Consensus       520 -~~-~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~  551 (721)
                       .+ .+.++||++..|..+++...+.++.+++++
T Consensus       207 ~~gp~~~~tgP~~r~D~~t~~~~l~~l~~~~~~~  240 (276)
T 2i76_A          207 KMRVECSLTGPVKRGDWQVVEEERREYEKIFGNT  240 (276)
T ss_dssp             HSCGGGGCCSHHHHTCHHHHHHHHHHHHHHHSCC
T ss_pred             hcChHhhCCCCcccCCHHHHHHHHHHHhccCccH
Confidence             33 556789999999999999999998875544

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=99.64  E-value=3e-16  Score=163.98  Aligned_cols=188  Identities=13%  Similarity=0.058  Sum_probs=133.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      +||+|||+|.||.++|..|+++|++|++||+++++++...+           .             .+..++++ +.+++
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~-----------~-------------g~~~~~~~~~~~~~   57 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAA-----------L-------------GAERAATPCEVVES   57 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHH-----------T-------------TCEECSSHHHHHHH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------C-------------CCeecCCHHHHHhc
Confidence            58999999999999999999999999999999998776432           1             24455565 55788


Q ss_pred             CCEEEEcccCChHHHHHHH--HHHHhhCCCCeEEEecCCCCCHH--HHhcccC-CCCcEEEecCCCCC----CCCCeeEE
Q 004972          385 VDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA----HVMPLLEI  455 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~--~~l~~~~~~~~ii~s~ts~~~i~--~l~~~~~-~~~r~ig~h~~~p~----~~~~lvEi  455 (721)
                      ||+||+|||++..++..++  .++.+.++++++|++.++..+.+  .+.+.+. ....|+. ||..+.    ....++.+
T Consensus        58 aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a~~g~l~~~  136 (287)
T 3pef_A           58 CPVTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLE-APVSGSKKPAEDGTLIIL  136 (287)
T ss_dssp             CSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE-CCEECCHHHHHHTCEEEE
T ss_pred             CCEEEEEcCCHHHHHHHHcCcchHhhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCEEEE-CCCcCCHHHHhcCCEEEE
Confidence            9999999996656554443  77888899999887654433322  3333332 2234554 443221    11234445


Q ss_pred             ecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCc--h---hhhhhhh----HHHHHHHHHHHc-CCCHHHHHHHH-Hhc
Q 004972          456 VRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG--F---AVNRAFF----PYSQSARLLVSL-GVDVFRIDSAI-RSF  522 (721)
Q Consensus       456 v~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~g--f---i~nRl~~----~~~~Ea~~l~~~-Gv~~~~ID~a~-~~~  522 (721)
                      +.+   ++++++.++++++.+|++++++++ +|  .   ++|+++.    ..++|++.+++. |++++++..++ .+.
T Consensus       137 ~gg---~~~~~~~~~~ll~~~g~~~~~~g~-~g~~~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~  210 (287)
T 3pef_A          137 AAG---DRNLYDEAMPGFEKMGKKIIHLGD-VGKGAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGA  210 (287)
T ss_dssp             EEE---CHHHHHHHHHHHHHHEEEEEECSS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHST
T ss_pred             EeC---CHHHHHHHHHHHHHhCCCeEEeCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence            554   689999999999999999999976 44  1   3344432    367899999987 99999999998 544

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=99.64  E-value=2.6e-16  Score=164.72  Aligned_cols=186  Identities=13%  Similarity=0.079  Sum_probs=127.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      +||||||+|.||.+||.+|+++||+|++||+++++++..           .+.|             ....+++ +.+++
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l-----------~~~G-------------~~~~~s~~e~~~~   61 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPL-----------TKLG-------------ATVVENAIDAITP   61 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTT-----------TTTT-------------CEECSSGGGGCCT
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH-----------HHcC-------------CeEeCCHHHHHhc
Confidence            489999999999999999999999999999999886542           2222             3334455 77899


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH---HHhcccCCCCcEEEecCCCCCCCC--------Cee
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHVM--------PLL  453 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~---~l~~~~~~~~r~ig~h~~~p~~~~--------~lv  453 (721)
                      ||+||.|+|.+......+...+.+.+++++++++.++ ..+.   ++++.+...    |.+|.+.|-.+        .+.
T Consensus        62 ~dvvi~~l~~~~~~~~v~~~~~~~~~~~~~iiid~sT-~~p~~~~~~~~~~~~~----g~~~ldapVsGg~~~a~~g~l~  136 (297)
T 4gbj_A           62 GGIVFSVLADDAAVEELFSMELVEKLGKDGVHVSMST-ISPETSRQLAQVHEWY----GAHYVGAPIFARPEAVRAKVGN  136 (297)
T ss_dssp             TCEEEECCSSHHHHHHHSCHHHHHHHCTTCEEEECSC-CCHHHHHHHHHHHHHT----TCEEEECCEECCHHHHHHTCCE
T ss_pred             CCceeeeccchhhHHHHHHHHHHhhcCCCeEEEECCC-CChHHHHHHHHHHHhc----CCceecCCcCCCccccccccce
Confidence            9999999997777666666778888889988876444 3333   333333211    34554333221        222


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCc-----hhhhhhhh----HHHHHHHHHHHc-CCCHHHHHHHH-Hhc
Q 004972          454 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG-----FAVNRAFF----PYSQSARLLVSL-GVDVFRIDSAI-RSF  522 (721)
Q Consensus       454 Eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~g-----fi~nRl~~----~~~~Ea~~l~~~-Gv~~~~ID~a~-~~~  522 (721)
                      -++.+   +++++++++++++.+|+.++++++.+|     -++|.++.    ..+.|++.+.+. |++++++-.++ .+.
T Consensus       137 im~gG---~~~~~~~~~~~l~~~g~~i~~~g~~~G~g~~~Kl~~N~~~~~~~~~~aEa~~la~~~Gld~~~~~~~l~~~~  213 (297)
T 4gbj_A          137 ICLSG---NAGAKERIKPIVENFVKGVFDFGDDPGAANVIKLAGNFMIACSLEMMGEAFTMAEKNGISRQSIYEMLTSTL  213 (297)
T ss_dssp             EEEEE---CHHHHHHHHHHHHTTCSEEEECCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTT
T ss_pred             eeccc---chhHHHHHHHHHHHhhCCeEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc
Confidence            23333   789999999999999999999987665     24455532    235699999987 99999998888 444


Q ss_pred             C
Q 004972          523 G  523 (721)
Q Consensus       523 G  523 (721)
                      +
T Consensus       214 ~  214 (297)
T 4gbj_A          214 F  214 (297)
T ss_dssp             T
T ss_pred             c
Confidence            3

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=99.64  E-value=2.6e-16  Score=164.49  Aligned_cols=190  Identities=13%  Similarity=0.097  Sum_probs=131.2

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  383 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  383 (721)
                      |+||+|||+|.||.++|..|+++|++|++||+++++++...+           .             .+..+++. +.++
T Consensus         1 M~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~-----------~-------------g~~~~~~~~~~~~   56 (287)
T 3pdu_A            1 MTTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVA-----------L-------------GARQASSPAEVCA   56 (287)
T ss_dssp             CCCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHH-----------H-------------TCEECSCHHHHHH
T ss_pred             CCeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------C-------------CCeecCCHHHHHH
Confidence            468999999999999999999999999999999998776432           1             23445555 5578


Q ss_pred             CCCEEEEcccCChHHHHHHH--HHHHhhCCCCeEEEecCCCCCHH--HHhcccC-CCCcEEEecCCCCCC---CCCeeEE
Q 004972          384 DVDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPAH---VMPLLEI  455 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~--~~l~~~~~~~~ii~s~ts~~~i~--~l~~~~~-~~~r~ig~h~~~p~~---~~~lvEi  455 (721)
                      +||+||+|||++..++..++  +++.+.++++++|++.++..+..  .+.+.+. ...+|+....+.++.   ...+..+
T Consensus        57 ~advvi~~v~~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~  136 (287)
T 3pdu_A           57 ACDITIAMLADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVSGTKKPAEDGTLIIL  136 (287)
T ss_dssp             HCSEEEECCSSHHHHHHHHHSTTCGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEE
T ss_pred             cCCEEEEEcCCHHHHHHHHcCchhhhhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEECCccCCHHHHhcCCEEEE
Confidence            99999999996655544443  66778888888887655433322  3333332 222343322221110   1122333


Q ss_pred             ecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCc------hhhhhhh---hHHHHHHHHHHHc-CCCHHHHHHHH-Hhc
Q 004972          456 VRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG------FAVNRAF---FPYSQSARLLVSL-GVDVFRIDSAI-RSF  522 (721)
Q Consensus       456 v~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~g------fi~nRl~---~~~~~Ea~~l~~~-Gv~~~~ID~a~-~~~  522 (721)
                      +.+   ++++++.++++++.+|++++++++ +|      ++.|.+.   ...++|++.+++. |++++++..++ .+.
T Consensus       137 ~gg---~~~~~~~~~~ll~~~g~~~~~~g~-~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~  210 (287)
T 3pdu_A          137 AAG---DQSLFTDAGPAFAALGKKCLHLGE-VGQGARMKLVVNMIMGQMMTALGEGMALGRNCGLDGGQLLEVLDAGA  210 (287)
T ss_dssp             EEE---CHHHHHHTHHHHHHHEEEEEECSS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHST
T ss_pred             EeC---CHHHHHHHHHHHHHhCCCEEEcCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence            333   689999999999999999999986 44      3445543   3456899998877 99999999998 544

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=99.63  E-value=1.2e-15  Score=161.73  Aligned_cols=190  Identities=14%  Similarity=0.102  Sum_probs=131.7

Q ss_pred             CceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc
Q 004972          304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  382 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  382 (721)
                      .++||+|||+|.||.++|..|+++|++|++||+++++++...+           .             .+..++++ +.+
T Consensus        30 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~-----------~-------------g~~~~~~~~e~~   85 (320)
T 4dll_A           30 YARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAA-----------L-------------GATIHEQARAAA   85 (320)
T ss_dssp             CCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHT-----------T-------------TCEEESSHHHHH
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHH-----------C-------------CCEeeCCHHHHH
Confidence            3569999999999999999999999999999999998776421           1             24455666 567


Q ss_pred             CCCCEEEEcccCChHHHHHHHH--HHHhhCCCCeEEEecCCCCCHH--HHhcccC-CCCcEEEecCCCCC---CCCCeeE
Q 004972          383 KDVDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLLE  454 (721)
Q Consensus       383 ~~aDlVIeavpe~~~~k~~v~~--~l~~~~~~~~ii~s~ts~~~i~--~l~~~~~-~~~r~ig~h~~~p~---~~~~lvE  454 (721)
                      ++||+||+|||++..++ .++.  ++.+.++++++|++.+++.+..  .+.+.+. ...+|+....+.++   ..+.+..
T Consensus        86 ~~aDvVi~~vp~~~~~~-~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~i  164 (320)
T 4dll_A           86 RDADIVVSMLENGAVVQ-DVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHLDTPVSGGTVGAEQGTLVI  164 (320)
T ss_dssp             TTCSEEEECCSSHHHHH-HHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECHHHHHHHTCEEE
T ss_pred             hcCCEEEEECCCHHHHH-HHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHhHHhcCCeeE
Confidence            89999999999655554 4444  6777788888887655443322  3333332 22234332111111   1223444


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCc------hhhhhhh---hHHHHHHHHHHHc-CCCHHHHHHHH-HhcC
Q 004972          455 IVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG------FAVNRAF---FPYSQSARLLVSL-GVDVFRIDSAI-RSFG  523 (721)
Q Consensus       455 iv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~g------fi~nRl~---~~~~~Ea~~l~~~-Gv~~~~ID~a~-~~~G  523 (721)
                      ++.+   ++++++.++++++.+ +.++++++ +|      ++.|-+.   ...++|++.+++. |++++++..++ .+.+
T Consensus       165 ~~gg---~~~~~~~~~~ll~~~-~~~~~~g~-~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~  239 (320)
T 4dll_A          165 MAGG---KPADFERSLPLLKVF-GRATHVGP-HGSGQLTKLANQMIVGITIGAVAEALLFATKGGADMAKVKEAITGGFA  239 (320)
T ss_dssp             EEES---CHHHHHHHHHHHHHH-EEEEEEES-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHTTSTT
T ss_pred             EeCC---CHHHHHHHHHHHHhc-CCEEEeCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcccc
Confidence            5554   689999999999999 88999976 34      3344433   3357899999987 99999999998 5443

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=99.61  E-value=1e-15  Score=152.39  Aligned_cols=159  Identities=9%  Similarity=0.014  Sum_probs=125.3

Q ss_pred             CceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972          304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  383 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  383 (721)
                      ..+||+|||+|.||+++|..|.++|++|++||+.                                          +.++
T Consensus         5 ~~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~------------------------------------------~~~~   42 (232)
T 3dfu_A            5 PRLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP------------------------------------------EDIR   42 (232)
T ss_dssp             CCCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG------------------------------------------GGGG
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH------------------------------------------HHhc
Confidence            3468999999999999999999999999999982                                          1146


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCCCH
Q 004972          384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA  463 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t~~  463 (721)
                      +||  |+|||.+  ...++++++.+.+++++++++.+++.+...+........+|++.||....     ..++...  ++
T Consensus        43 ~aD--ilavP~~--ai~~vl~~l~~~l~~g~ivvd~sgs~~~~vl~~~~~~g~~fvg~HPm~g~-----~~~i~a~--d~  111 (232)
T 3dfu_A           43 DFE--LVVIDAH--GVEGYVEKLSAFARRGQMFLHTSLTHGITVMDPLETSGGIVMSAHPIGQD-----RWVASAL--DE  111 (232)
T ss_dssp             GCS--EEEECSS--CHHHHHHHHHTTCCTTCEEEECCSSCCGGGGHHHHHTTCEEEEEEEEETT-----EEEEEES--SH
T ss_pred             cCC--EEEEcHH--HHHHHHHHHHHhcCCCCEEEEECCcCHHHHHHHHHhCCCcEEEeeeCCCC-----ceeeeCC--CH
Confidence            788  8899954  66788899999999999998766555555444444556789999986432     2233322  78


Q ss_pred             HHHHHHHHHHHHcCCeeEEEc--CCCch----hhhhhhhHHHHHHHHHH---HcCC-CHHHH
Q 004972          464 QVILDLMTVGKIIKKVPVVVG--NCTGF----AVNRAFFPYSQSARLLV---SLGV-DVFRI  515 (721)
Q Consensus       464 e~~~~~~~l~~~lG~~~v~v~--d~~gf----i~nRl~~~~~~Ea~~l~---~~Gv-~~~~I  515 (721)
                      +.++.++++++.+|++++.+.  +.++|    ..++.+.++.++|.+++   ++|+ +++|+
T Consensus       112 ~a~~~l~~L~~~lG~~vv~~~~~~hd~~~AAvsh~nhLv~L~~~A~~ll~~~~~g~a~~~d~  173 (232)
T 3dfu_A          112 LGETIVGLLVGELGGSIVEIADDKRAQLAAALTYAGFLSTLQRDASYFLDEFLGDPDVTSDI  173 (232)
T ss_dssp             HHHHHHHHHHHHTTCEECCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCEEEEeCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhh
Confidence            899999999999999999994  46666    55777888999999999   8898 88883

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=99.60  E-value=7.3e-15  Score=153.36  Aligned_cols=188  Identities=13%  Similarity=0.027  Sum_probs=135.8

Q ss_pred             ceeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972          305 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  383 (721)
Q Consensus       305 ~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  383 (721)
                      |+||+|||+ |.||+++|..|++.|++|++||++++.++.+.+           .|             +..++..+.++
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~-----------~g-------------~~~~~~~~~~~   66 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQG-----------MG-------------IPLTDGDGWID   66 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHH-----------TT-------------CCCCCSSGGGG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHh-----------cC-------------CCcCCHHHHhc
Confidence            569999999 999999999999999999999999988765421           12             22233336678


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCC--------CCCe---
Q 004972          384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAH--------VMPL---  452 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~--------~~~l---  452 (721)
                      +||+||+|+|  .....++++++.+.++++++|++.+++.++..+.+ .....++++.||+.|..        ....   
T Consensus        67 ~aDvVi~av~--~~~~~~v~~~l~~~l~~~~ivv~~s~~~~~~~l~~-~~~~~~~v~~~P~~~~~~~~~~~~~~~~g~l~  143 (286)
T 3c24_A           67 EADVVVLALP--DNIIEKVAEDIVPRVRPGTIVLILDAAAPYAGVMP-ERADITYFIGHPCHPPLFNDETDPAARTDYHG  143 (286)
T ss_dssp             TCSEEEECSC--HHHHHHHHHHHGGGSCTTCEEEESCSHHHHHTCSC-CCTTSEEEEEEECCSCSSCCCCSHHHHTCSSS
T ss_pred             CCCEEEEcCC--chHHHHHHHHHHHhCCCCCEEEECCCCchhHHHHh-hhCCCeEEecCCCCccccccccchhhccCccc
Confidence            9999999999  45578899999999999999998777676666654 33345899999998766        2232   


Q ss_pred             -----eEEecCCCCCHHHHHHHHHHHHHcCC---eeEEEcCC-Cch----hhhhhhhHH---HHHHHHH-HHc-CCCHHH
Q 004972          453 -----LEIVRTERTSAQVILDLMTVGKIIKK---VPVVVGNC-TGF----AVNRAFFPY---SQSARLL-VSL-GVDVFR  514 (721)
Q Consensus       453 -----vEiv~~~~t~~e~~~~~~~l~~~lG~---~~v~v~d~-~gf----i~nRl~~~~---~~Ea~~l-~~~-Gv~~~~  514 (721)
                           ..++.+..++++.++.+.++++.+|+   .++++++. .+.    +.|-...++   +.|++.. ... |+++++
T Consensus       144 ~~~~~~~i~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~v~~~~~~~~~~a~~n~~~~~~~~~~~eal~~~~~~~Gl~~~~  223 (286)
T 3c24_A          144 GIAKQAIVCALMQGPEEHYAIGADICETMWSPVTRTHRVTTEQLAILEPGLSEMVAMPFVETMVHAVDECADRYGIDRQA  223 (286)
T ss_dssp             SSSCEEEEEEEEESCTHHHHHHHHHHHHHTCSEEEEEECCHHHHHHHTTHHHHTTHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred             ccccceeeeeccCCCHHHHHHHHHHHHHhcCCcceEEEeChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence                 23333344688999999999999999   88888642 222    234443333   2354433 333 898887


Q ss_pred             HHHHH
Q 004972          515 IDSAI  519 (721)
Q Consensus       515 ID~a~  519 (721)
                      +-.++
T Consensus       224 ~~~~~  228 (286)
T 3c24_A          224 ALDFM  228 (286)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77665

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=99.60  E-value=2.7e-15  Score=167.05  Aligned_cols=204  Identities=13%  Similarity=0.081  Sum_probs=145.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHH--HhhcCceeccCc-ccc
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKAN--NALKMLKGVLDY-SEF  382 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~i~~~~~~-~~l  382 (721)
                      +||+|||+|.||.++|..|+++|++|++||+++++++.+.+....    ....+ + .+...  ...+++.+++++ +.+
T Consensus         9 ~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~----i~e~g-l-~~~l~~~~~~~~l~~ttd~~~a~   82 (478)
T 2y0c_A            9 MNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVP----IHEPG-L-KEVIARNRSAGRLRFSTDIEAAV   82 (478)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCS----SCCTT-H-HHHHHHHHHTTCEEEECCHHHHH
T ss_pred             ceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCC----cCCCC-H-HHHHHHhcccCCEEEECCHHHHh
Confidence            589999999999999999999999999999999998875431000    00000 0 00011  012468888888 568


Q ss_pred             CCCCEEEEcccC--------ChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH---HHhcccC----CC---CcEEEecCC
Q 004972          383 KDVDMVIEAVIE--------SVPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTS----SQ---DRIIGAHFF  444 (721)
Q Consensus       383 ~~aDlVIeavpe--------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~---~l~~~~~----~~---~r~ig~h~~  444 (721)
                      ++||+||+|||+        |+....++++++.++++++++|++ .|++++.   .+...+.    .+   ..+  .+.+
T Consensus        83 ~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~-~STv~~gt~~~l~~~l~~~~~~g~~~~~~--~v~~  159 (478)
T 2y0c_A           83 AHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVD-KSTVPVGTAERVRAAVAEELAKRGGDQMF--SVVS  159 (478)
T ss_dssp             HHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEE-CSCCCTTHHHHHHHHHHHHHHHTTCCCCE--EEEE
T ss_pred             hcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEE-eCCcCCCchHHHHHHHHHHhcCCCCCccE--EEEE
Confidence            999999999997        458899999999999999998864 4566542   2222211    11   222  2456


Q ss_pred             CCCCCCCee---------EEecCCCCCH----HHHHHHHHHHHHcCC--eeEEEcC-----CCchhhhhhh---hHHHHH
Q 004972          445 SPAHVMPLL---------EIVRTERTSA----QVILDLMTVGKIIKK--VPVVVGN-----CTGFAVNRAF---FPYSQS  501 (721)
Q Consensus       445 ~p~~~~~lv---------Eiv~~~~t~~----e~~~~~~~l~~~lG~--~~v~v~d-----~~gfi~nRl~---~~~~~E  501 (721)
                      +|....+..         .++.|.. ++    +..+.+.++++.+++  .++++.+     ..+++.|.+.   .+++||
T Consensus       160 ~Pe~~~eG~~~~~~~~p~~iviG~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE  238 (478)
T 2y0c_A          160 NPEFLKEGAAVDDFTRPDRIVIGCD-DDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISFMNE  238 (478)
T ss_dssp             CCCCCCTTCHHHHHHSCSCEEEECC-SSHHHHHHHHHHHHHTGGGGSSSCCEEEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhhhcccceeeccCCCCEEEEEEC-CCcccHHHHHHHHHHHHHHhccCCeEEcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            776665554         3555543 34    789999999998875  5777764     4567888875   667899


Q ss_pred             HHHHHHc-CCCHHHHHHHH
Q 004972          502 ARLLVSL-GVDVFRIDSAI  519 (721)
Q Consensus       502 a~~l~~~-Gv~~~~ID~a~  519 (721)
                      +..+++. |++++++..++
T Consensus       239 ~~~la~~~Gid~~~v~~~i  257 (478)
T 2y0c_A          239 LANLADRFGADIEAVRRGI  257 (478)
T ss_dssp             HHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHH
Confidence            9999988 99999999888

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=99.59  E-value=1e-14  Score=154.83  Aligned_cols=189  Identities=13%  Similarity=0.068  Sum_probs=137.1

Q ss_pred             CceeEEEEcCCCCcHHHHHHHHHCC----CceEEEeCCHH--HHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceecc
Q 004972          304 GVRKVAVIGGGLMGSGIATAHILNN----IYVVLKEVNSE--YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL  377 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~~la~~G----~~V~l~d~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  377 (721)
                      .++||+|||+|.||++||..|+++|    ++|++||++++  +++.+.           +.|             +..++
T Consensus        21 ~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~-----------~~G-------------~~~~~   76 (322)
T 2izz_A           21 QSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALR-----------KMG-------------VKLTP   76 (322)
T ss_dssp             -CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHH-----------HHT-------------CEEES
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHH-----------HcC-------------CEEeC
Confidence            3458999999999999999999999    89999999986  555432           111             33344


Q ss_pred             Cc-cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCC---CCcEEEecCCCCCCCCCee
Q 004972          378 DY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSS---QDRIIGAHFFSPAHVMPLL  453 (721)
Q Consensus       378 ~~-~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~---~~r~ig~h~~~p~~~~~lv  453 (721)
                      +. +.+++||+||+|||  .....+++.++.+.++++++|++.++++++..+.+.+..   ..++++.|+..|.......
T Consensus        77 ~~~e~~~~aDvVilav~--~~~~~~vl~~l~~~l~~~~ivvs~s~gi~~~~l~~~l~~~~~~~~vv~~~p~~p~~~~~g~  154 (322)
T 2izz_A           77 HNKETVQHSDVLFLAVK--PHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMTNTPVVVREGA  154 (322)
T ss_dssp             CHHHHHHHCSEEEECSC--GGGHHHHHHHHGGGCCTTCEEEECCTTCCHHHHHHHHHTTSSCCEEEEEECCGGGGGTCEE
T ss_pred             ChHHHhccCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHhhcCCCCeEEEEeCCcHHHHcCCe
Confidence            44 56788999999999  678888999999989889999998888888777665542   4589999999888777666


Q ss_pred             EEe-cCCCCCHHHHHHHHHHHHHcCCeeEEEcCCC----ch--hhhhhhhHHHHHHHH--HHHcCCCHHHHHHHH
Q 004972          454 EIV-RTERTSAQVILDLMTVGKIIKKVPVVVGNCT----GF--AVNRAFFPYSQSARL--LVSLGVDVFRIDSAI  519 (721)
Q Consensus       454 Eiv-~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~----gf--i~nRl~~~~~~Ea~~--l~~~Gv~~~~ID~a~  519 (721)
                      .++ .++.++++.++.+.++++.+|..+++..+.-    +.  ..+-+++ .+.|++.  ....|+++++.-.++
T Consensus       155 ~v~~~g~~~~~~~~~~v~~ll~~~G~~~~~~e~~~~~~~a~~g~gpa~~~-~~~eala~a~~~~Gl~~~~a~~l~  228 (322)
T 2izz_A          155 TVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPAYAF-TALDALADGGVKMGLPRRLAVRLG  228 (322)
T ss_dssp             EEEEECTTCCHHHHHHHHHHHHTTEEEEECCGGGHHHHHHHTTTHHHHHH-HHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHhCCCEEEeCHHHHHHHHHHhcCHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHH
Confidence            655 5777789999999999999998765432210    00  1122222 2334433  234588887766665

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=99.56  E-value=1.6e-14  Score=159.47  Aligned_cols=205  Identities=16%  Similarity=0.162  Sum_probs=138.6

Q ss_pred             CceeEEEEcCCCCcHHHHHHHHHC-CC-ceEEEeCCHH----HHHHHHHHH------HHHHHhhhhcCCCCHHHHHHhhc
Q 004972          304 GVRKVAVIGGGLMGSGIATAHILN-NI-YVVLKEVNSE----YLLKGIKTI------EANVRGLVTRGKLTQDKANNALK  371 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~~la~~-G~-~V~l~d~~~~----~~~~~~~~~------~~~~~~~~~~g~~~~~~~~~~~~  371 (721)
                      +++||+|||+|.||.++|..|+++ |+ +|++||++++    +++...+..      +..++.++++        ....+
T Consensus        17 ~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~--------~~~~g   88 (478)
T 3g79_A           17 PIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGK--------VVKAG   88 (478)
T ss_dssp             SCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHH--------HHHTT
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHh--------hcccC
Confidence            467999999999999999999999 99 9999999999    877643210      0000000000        00136


Q ss_pred             CceeccCccccCCCCEEEEcccCCh----------HHHHHHHHHHHhhCCCCeEEEecCCCCCHH---HHhc-----ccC
Q 004972          372 MLKGVLDYSEFKDVDMVIEAVIESV----------PLKQKIFSELEKACPPHCILATNTSTIDLN---IVGE-----KTS  433 (721)
Q Consensus       372 ~i~~~~~~~~l~~aDlVIeavpe~~----------~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~---~l~~-----~~~  433 (721)
                      ++.++++.+++++||+||+|||++.          .......+++.++++++++|+. .||+++.   ++..     ...
T Consensus        89 ~l~~ttd~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~-~STv~pgtt~~v~~~ile~~~g  167 (478)
T 3g79_A           89 KFECTPDFSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVL-ESTITPGTTEGMAKQILEEESG  167 (478)
T ss_dssp             CEEEESCGGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEE-CSCCCTTTTTTHHHHHHHHHHC
T ss_pred             CeEEeCcHHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEE-eCCCChHHHHHHHHHHHHHhcC
Confidence            7888888888999999999998753          3456677889999999998864 4555543   2221     111


Q ss_pred             C--CCcE-EEecCCCCCCCCCee---------EEecCCCCCHHHHHHHHHHHHHc-CCeeEEEcCCCc----hhhhhhh-
Q 004972          434 S--QDRI-IGAHFFSPAHVMPLL---------EIVRTERTSAQVILDLMTVGKII-KKVPVVVGNCTG----FAVNRAF-  495 (721)
Q Consensus       434 ~--~~r~-ig~h~~~p~~~~~lv---------Eiv~~~~t~~e~~~~~~~l~~~l-G~~~v~v~d~~g----fi~nRl~-  495 (721)
                      .  ...| +.   ++|....+.-         -|+.|  .+++..+.+.++++.+ ++.++++++...    -++|.++ 
T Consensus       168 ~~~~~d~~v~---~~Pe~~~~G~a~~~~~~~~~Iv~G--~~~~~~~~~~~ly~~~~~~~~~~~~~~~~aE~~Kl~~N~~~  242 (478)
T 3g79_A          168 LKAGEDFALA---HAPERVMVGRLLKNIREHDRIVGG--IDEASTKRAVELYSPVLTVGQVIPMSATAAEVTKTAENTFR  242 (478)
T ss_dssp             CCBTTTBEEE---ECCCCCCTTSHHHHHHHSCEEEEE--SSHHHHHHHHHHHGGGCSSCCEEEEEHHHHHHHHHHHHHHH
T ss_pred             CCcCCceeEE---eCCccCCccchhhhhcCCcEEEEe--CCHHHHHHHHHHHhhhccCCeEEeCCHHHHHHHHHHHHHHH
Confidence            1  0111 11   3444333221         25544  3688889999999999 888888865321    2334432 


Q ss_pred             ---hHHHHHHHHHHHc-CCCHHHHHHHH-Hhc
Q 004972          496 ---FPYSQSARLLVSL-GVDVFRIDSAI-RSF  522 (721)
Q Consensus       496 ---~~~~~Ea~~l~~~-Gv~~~~ID~a~-~~~  522 (721)
                         .+++||+..+++. |+|+.++-.++ ...
T Consensus       243 a~~Ia~~nE~~~l~e~~GiD~~~v~~~~~~~~  274 (478)
T 3g79_A          243 DLQIAAINQLALYCEAMGINVYDVRTGVDSLK  274 (478)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHCCCc
Confidence               4678999999988 99999998888 444

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=99.55  E-value=1.4e-13  Score=141.77  Aligned_cols=183  Identities=12%  Similarity=0.090  Sum_probs=131.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCC-CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  383 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  383 (721)
                      +||+|||+|.||.++|..|+++| ++|++||+++++++...+.          .|             +..+++. +.+ 
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~----------~g-------------~~~~~~~~~~~-   56 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKE----------LG-------------VETSATLPELH-   56 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHH----------TC-------------CEEESSCCCCC-
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHh----------cC-------------CEEeCCHHHHh-
Confidence            37999999999999999999999 9999999999887764321          01             3344454 567 


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCC-eeEEecCCCCC
Q 004972          384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMP-LLEIVRTERTS  462 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~-lvEiv~~~~t~  462 (721)
                      +||+||+|+|  .....+++.++.+  + +++|++.++++++..+.+.+....+++..++..|..... ...++++..++
T Consensus        57 ~~D~vi~~v~--~~~~~~v~~~l~~--~-~~ivv~~~~g~~~~~l~~~~~~~~~~v~~~~~~~~~~~~g~~~i~~~~~~~  131 (263)
T 1yqg_A           57 SDDVLILAVK--PQDMEAACKNIRT--N-GALVLSVAAGLSVGTLSRYLGGTRRIVRVMPNTPGKIGLGVSGMYAEAEVS  131 (263)
T ss_dssp             TTSEEEECSC--HHHHHHHHTTCCC--T-TCEEEECCTTCCHHHHHHHTTSCCCEEEEECCGGGGGTCEEEEEECCTTSC
T ss_pred             cCCEEEEEeC--chhHHHHHHHhcc--C-CCEEEEecCCCCHHHHHHHcCCCCcEEEEcCCHHHHHcCceEEEEcCCCCC
Confidence            9999999999  6666777776655  4 889999889999888887776656888886655665554 34566777789


Q ss_pred             HHHHHHHHHHHHHcCCeeEEEc-CC--------CchhhhhhhhHHHHHHHH-HHHcCCCHHHHHHHH
Q 004972          463 AQVILDLMTVGKIIKKVPVVVG-NC--------TGFAVNRAFFPYSQSARL-LVSLGVDVFRIDSAI  519 (721)
Q Consensus       463 ~e~~~~~~~l~~~lG~~~v~v~-d~--------~gfi~nRl~~~~~~Ea~~-l~~~Gv~~~~ID~a~  519 (721)
                      ++.++.+.++++.+|..+ +++ +.        .| ..+..+..++..... ....|++++++...+
T Consensus       132 ~~~~~~~~~l~~~~g~~~-~~~~~~~~~~~~al~g-~~~~~~~~~~~~l~e~~~~~G~~~~~~~~~~  196 (263)
T 1yqg_A          132 ETDRRIADRIMKSVGLTV-WLDDEEKMHGITGISG-SGPAYVFYLLDALQNAAIRQGFDMAEARALS  196 (263)
T ss_dssp             HHHHHHHHHHHHTTEEEE-ECSSTTHHHHHHHHTT-SHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCEE-EeCChhhccHHHHHHc-cHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            999999999999999876 666 41        11 111122222221111 334588887777666

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=99.54  E-value=8.4e-14  Score=147.28  Aligned_cols=193  Identities=12%  Similarity=0.064  Sum_probs=127.7

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCC-CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceec-cCcccc
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDYSEF  382 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~l  382 (721)
                      ++||+|||+|.||.++|..|+++| ++|++||++++..+++.+..+    ...+.|             + .+ +..+.+
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~----~~~~~g-------------~-~~~s~~e~~   85 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRA----RAAELG-------------V-EPLDDVAGI   85 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHH----HHHHTT-------------C-EEESSGGGG
T ss_pred             CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHH----HHHHCC-------------C-CCCCHHHHH
Confidence            468999999999999999999999 999999999832111111110    111122             2 33 334678


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH--HHhcccC-CCCcEEEecCCCCC--CCCCeeEEec
Q 004972          383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA--HVMPLLEIVR  457 (721)
Q Consensus       383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~--~l~~~~~-~~~r~ig~h~~~p~--~~~~lvEiv~  457 (721)
                      ++||+||+|||.+...  +.+.++.+.++++++|++.++..+.+  .+.+.+. ...+|+....+.|.  ....+..++.
T Consensus        86 ~~aDvVi~avp~~~~~--~~~~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~~~a~~g~l~i~vg  163 (317)
T 4ezb_A           86 ACADVVLSLVVGAATK--AVAASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMARVPPYAEKVPILVA  163 (317)
T ss_dssp             GGCSEEEECCCGGGHH--HHHHHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSCSTTTGGGSEEEEE
T ss_pred             hcCCEEEEecCCHHHH--HHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCCchhhcCCEEEEEe
Confidence            9999999999965544  45688888999999888765443322  3333332 22345543323332  2344565666


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCeeEEEcCCCch-----hhhhh----hhHHHHHHHHHHHc-CCCHHHHHHHHHhc
Q 004972          458 TERTSAQVILDLMTVGKIIKKVPVVVGNCTGF-----AVNRA----FFPYSQSARLLVSL-GVDVFRIDSAIRSF  522 (721)
Q Consensus       458 ~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~gf-----i~nRl----~~~~~~Ea~~l~~~-Gv~~~~ID~a~~~~  522 (721)
                      ++.   +  +.++++++.+|+.++++++.+|-     ++|.+    ..+.++|++.+++. |++++.++.+..+.
T Consensus       164 g~~---~--~~~~~ll~~~g~~v~~~g~~~g~a~~~Kl~~N~~~~~~~~~~~E~~~la~~~Gid~~~~~~l~~~~  233 (317)
T 4ezb_A          164 GRR---A--VEVAERLNALGMNLEAVGETPGQASSLKMIRSVMIKGVEALLIEALSSAERAGVTERILDSVQETF  233 (317)
T ss_dssp             STT---H--HHHHHHHHTTTCEEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred             CCh---H--HHHHHHHHHhCCCeEEeCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence            643   2  78999999999999999876662     33333    35567899999987 99997666665443

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=99.54  E-value=2.2e-14  Score=151.15  Aligned_cols=189  Identities=11%  Similarity=0.043  Sum_probs=130.3

Q ss_pred             CceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc
Q 004972          304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  382 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  382 (721)
                      .++||+|||+|.||.+||..|+++|++|++||+++++++.+.+           .|             +...++. +.+
T Consensus         8 ~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g-------------~~~~~~~~e~~   63 (306)
T 3l6d_A            8 FEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVA-----------AG-------------AHLCESVKAAL   63 (306)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHH-----------HT-------------CEECSSHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----------CC-------------CeecCCHHHHH
Confidence            3568999999999999999999999999999999998776432           11             3334455 567


Q ss_pred             CCCCEEEEcccCChHHHHHHHH--HHHhhCCCCeEEEecCCCCCHH--HHhcccC-CCCcEEEecCCCCC-CC--CCeeE
Q 004972          383 KDVDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA-HV--MPLLE  454 (721)
Q Consensus       383 ~~aDlVIeavpe~~~~k~~v~~--~l~~~~~~~~ii~s~ts~~~i~--~l~~~~~-~~~r~ig~h~~~p~-~~--~~lvE  454 (721)
                      ++||+||+|||++..++ .++.  .+... .++++|++.++..+..  .+.+.+. ...+|+....+.++ ..  ..++.
T Consensus        64 ~~aDvVi~~vp~~~~~~-~v~~~~~l~~~-~~g~ivid~st~~~~~~~~l~~~~~~~g~~~vdapv~g~~~~~~~~~~~i  141 (306)
T 3l6d_A           64 SASPATIFVLLDNHATH-EVLGMPGVARA-LAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKGMIVAYPRNVGHRESHS  141 (306)
T ss_dssp             HHSSEEEECCSSHHHHH-HHHTSTTHHHH-TTTCEEEECCCCCTTHHHHHHHHHHHTTCEEEEEEEESCGGGTTCTTCEE
T ss_pred             hcCCEEEEEeCCHHHHH-HHhcccchhhc-cCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEecccccCcccccCCceEE
Confidence            88999999999655544 4444  56554 5777776544443322  3333332 33456554332211 11  12333


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCCeeEEE--cC--CCchhhhhhh---hHHHHHHHHHHHc-CCCHHHHHHHH-Hh
Q 004972          455 IVRTERTSAQVILDLMTVGKIIKKVPVVV--GN--CTGFAVNRAF---FPYSQSARLLVSL-GVDVFRIDSAI-RS  521 (721)
Q Consensus       455 iv~~~~t~~e~~~~~~~l~~~lG~~~v~v--~d--~~gfi~nRl~---~~~~~Ea~~l~~~-Gv~~~~ID~a~-~~  521 (721)
                      ++.+   ++++++.++++++.+|++++++  ++  ..|...+-++   ...++|++.+++. |++++++..++ .+
T Consensus       142 ~~gg---~~~~~~~~~~ll~~lg~~~~~~~~g~~~g~g~~~k~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~  214 (306)
T 3l6d_A          142 IHTG---DREAFEQHRALLEGLAGHTVFLPWDEALAFATVLHAHAFAAMVTFFEAVGAGDRFGLPVSKTARLLLET  214 (306)
T ss_dssp             EEEE---CHHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             EEcC---CHHHHHHHHHHHHHhcCCEEEecCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence            4444   6999999999999998899999  75  4567776332   3456799998877 99999999988 44

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=99.53  E-value=1.4e-14  Score=153.52  Aligned_cols=188  Identities=15%  Similarity=0.122  Sum_probs=135.4

Q ss_pred             CceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc
Q 004972          304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  382 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  382 (721)
                      .++||+|||+|.||..+|..|++.|++|++||++++.++...+           .|             +..+++. +.+
T Consensus        29 ~~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~g-------------~~~~~~~~~~~   84 (316)
T 2uyy_A           29 TDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQ-----------EG-------------ARLGRTPAEVV   84 (316)
T ss_dssp             CSSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHH-----------TT-------------CEECSCHHHHH
T ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH-----------cC-------------CEEcCCHHHHH
Confidence            3578999999999999999999999999999999987665321           12             2233444 557


Q ss_pred             CCCCEEEEcccCChHHHHHHHHH---HHhhCCCCeEEEecCCCCC--HHHHhcccC-CCCcEEEecCCCCC---CCCCee
Q 004972          383 KDVDMVIEAVIESVPLKQKIFSE---LEKACPPHCILATNTSTID--LNIVGEKTS-SQDRIIGAHFFSPA---HVMPLL  453 (721)
Q Consensus       383 ~~aDlVIeavpe~~~~k~~v~~~---l~~~~~~~~ii~s~ts~~~--i~~l~~~~~-~~~r~ig~h~~~p~---~~~~lv  453 (721)
                      ++||+||+|+|++..++ .++.+   +.+.+.++++|++.+++.+  ..++.+.+. .+.++++.++++.+   ..+.++
T Consensus        85 ~~~DvVi~av~~~~~~~-~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~~v~~p~~g~~~~~~~g~~~  163 (316)
T 2uyy_A           85 STCDITFACVSDPKAAK-DLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLV  163 (316)
T ss_dssp             HHCSEEEECCSSHHHHH-HHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEE
T ss_pred             hcCCEEEEeCCCHHHHH-HHHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCccCChhHHhhCCEE
Confidence            88999999999655554 44443   3366778888876544332  345555543 45678887766432   234556


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCC-----Cchhhhhh---hhHHHHHHHHHHHc-CCCHHHHHHHH
Q 004972          454 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNC-----TGFAVNRA---FFPYSQSARLLVSL-GVDVFRIDSAI  519 (721)
Q Consensus       454 Eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~-----~gfi~nRl---~~~~~~Ea~~l~~~-Gv~~~~ID~a~  519 (721)
                      .++++   +++.++.+.++++.+|+.++++++.     ..++.|.+   +..+++|++.+.+. |+++++++.++
T Consensus       164 ~~~~g---~~~~~~~v~~ll~~~g~~~~~~~~~~~~~~~K~~~n~~~~~~~~~~~Ea~~la~~~G~~~~~~~~~~  235 (316)
T 2uyy_A          164 ILAAG---DRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDIL  235 (316)
T ss_dssp             EEEEE---CHHHHHHTHHHHHHHEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             EEeCC---CHHHHHHHHHHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            66666   5789999999999999999888762     12456766   45667899998876 99999999988

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=99.53  E-value=2.1e-14  Score=152.45  Aligned_cols=154  Identities=14%  Similarity=0.157  Sum_probs=116.9

Q ss_pred             CceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc
Q 004972          304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  382 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  382 (721)
                      .++||+|||+|.||++||..|.++|++|++||++++.++.+.+           .|             +..+++. +.+
T Consensus         7 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~-----------~G-------------~~~~~~~~e~~   62 (341)
T 3ktd_A            7 ISRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVD-----------EG-------------FDVSADLEATL   62 (341)
T ss_dssp             CSSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHH-----------TT-------------CCEESCHHHHH
T ss_pred             CCCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----------cC-------------CeeeCCHHHHH
Confidence            3578999999999999999999999999999999998776421           12             1223343 333


Q ss_pred             ----CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCC--HHHHhcccCCCCcEEEecCCCCCCC-------
Q 004972          383 ----KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAHV-------  449 (721)
Q Consensus       383 ----~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--i~~l~~~~~~~~r~ig~h~~~p~~~-------  449 (721)
                          ++||+||+|||  ......+++++.++ +++++|++.+|+..  +..+..... ..+|++.||...+..       
T Consensus        63 ~~a~~~aDlVilavP--~~~~~~vl~~l~~~-~~~~iv~Dv~Svk~~i~~~~~~~~~-~~~~v~~HPmaG~e~sG~~aa~  138 (341)
T 3ktd_A           63 QRAAAEDALIVLAVP--MTAIDSLLDAVHTH-APNNGFTDVVSVKTAVYDAVKARNM-QHRYVGSHPMAGTANSGWSASM  138 (341)
T ss_dssp             HHHHHTTCEEEECSC--HHHHHHHHHHHHHH-CTTCCEEECCSCSHHHHHHHHHTTC-GGGEECEEECCSCC-CCGGGCC
T ss_pred             HhcccCCCEEEEeCC--HHHHHHHHHHHHcc-CCCCEEEEcCCCChHHHHHHHHhCC-CCcEecCCccccccccchhhhh
Confidence                35799999999  77788999999887 78888876655432  334544432 468999999876531       


Q ss_pred             -----CCeeEEecCCCCCHH--------HHHHHHHHHHHcCCeeEEEcC
Q 004972          450 -----MPLLEIVRTERTSAQ--------VILDLMTVGKIIKKVPVVVGN  485 (721)
Q Consensus       450 -----~~lvEiv~~~~t~~e--------~~~~~~~l~~~lG~~~v~v~d  485 (721)
                           +..+-+++++.++++        .++.+.++++.+|++++++.+
T Consensus       139 ~~Lf~g~~~iltp~~~~~~e~~~~~~~~~~~~v~~l~~~~Ga~v~~~~~  187 (341)
T 3ktd_A          139 DGLFKRAVWVVTFDQLFDGTDINSTWISIWKDVVQMALAVGAEVVPSRV  187 (341)
T ss_dssp             SSTTTTCEEEECCGGGTSSCCCCHHHHHHHHHHHHHHHHTTCEEEECCH
T ss_pred             hHHhcCCeEEEEeCCCCChhhhccchHHHHHHHHHHHHHcCCEEEEeCH
Confidence                 224667788888888        999999999999999999853

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=99.52  E-value=6.9e-14  Score=146.20  Aligned_cols=159  Identities=14%  Similarity=0.093  Sum_probs=121.0

Q ss_pred             CCceeEEEEcCCCCcHHHHHHHHHC--CCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-
Q 004972          303 RGVRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  379 (721)
Q Consensus       303 ~~~~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-  379 (721)
                      |+++||+|||+|.||+++|..|+++  |++|++||++++.++.+.           +.|..           ...++++ 
T Consensus         4 M~~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~-----------~~g~~-----------~~~~~~~~   61 (290)
T 3b1f_A            4 MEEKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIAL-----------ERGIV-----------DEATADFK   61 (290)
T ss_dssp             GCCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHH-----------HTTSC-----------SEEESCTT
T ss_pred             cccceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHH-----------HcCCc-----------ccccCCHH
Confidence            4467999999999999999999987  679999999998876542           11211           0234455 


Q ss_pred             cccCCCCEEEEcccCChHHHHHHHHHHHhh-CCCCeEEEecCCCCC--HHHHhcccCC-CCcEEEecCC------CCCC-
Q 004972          380 SEFKDVDMVIEAVIESVPLKQKIFSELEKA-CPPHCILATNTSTID--LNIVGEKTSS-QDRIIGAHFF------SPAH-  448 (721)
Q Consensus       380 ~~l~~aDlVIeavpe~~~~k~~v~~~l~~~-~~~~~ii~s~ts~~~--i~~l~~~~~~-~~r~ig~h~~------~p~~-  448 (721)
                      +.+++||+||+|||  .....+++.++.+. ++++++|++.+++..  ...+.+.+.. ..++++.||+      .|.. 
T Consensus        62 ~~~~~aDvVilavp--~~~~~~v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~v~~~P~~g~~~~g~~~a  139 (290)
T 3b1f_A           62 VFAALADVIILAVP--IKKTIDFIKILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFVGSHPMAGSHKSGAVAA  139 (290)
T ss_dssp             TTGGGCSEEEECSC--HHHHHHHHHHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCEEEEEEEC-----CCTTSC
T ss_pred             HhhcCCCEEEEcCC--HHHHHHHHHHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCEEEEeCCcCCCCcchHHHh
Confidence            56789999999999  55568899999888 888998876544322  2455555554 5789999997      4443 


Q ss_pred             -----CCCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004972          449 -----VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN  485 (721)
Q Consensus       449 -----~~~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d  485 (721)
                           .+..+.++++..++++.++.+.++++.+|..++++.+
T Consensus       140 ~~~l~~g~~~~~~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~  181 (290)
T 3b1f_A          140 NVNLFENAYYIFSPSCLTKPNTIPALQDLLSGLHARYVEIDA  181 (290)
T ss_dssp             CTTTTTTSEEEEEECTTCCTTHHHHHHHHTGGGCCEEEECCH
T ss_pred             hHHHhCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence                 3355778888888999999999999999999888764

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=99.52  E-value=1.8e-14  Score=151.63  Aligned_cols=90  Identities=27%  Similarity=0.372  Sum_probs=85.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhh-CC-CCCCC
Q 004972          617 EKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLY-GN-FFKPS  694 (721)
Q Consensus       617 ~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~-~~-~~~p~  694 (721)
                      ++++.||++.+++||+++++++|++ ++++||.++..|+|||.   |||+++|.+|+|.++++++.+.+.+ ++ +|.|+
T Consensus       203 ~g~i~nr~l~~~~~Ea~~l~~~g~~-~~~~id~~~~~g~g~p~---GP~~~~D~~Gld~~~~~~~~l~~~~~~~~~~~~~  278 (302)
T 1f0y_A          203 PGFIVNRLLVPYLMEAIRLYERGDA-SKEDIDTAMKLGAGYPM---GPFELLDYVGLDTTKFIVDGWHEMDAENPLHQPS  278 (302)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHHCCSS---CHHHHHHHHCHHHHHHHHHHHHHTTTTCGGGCCC
T ss_pred             ccccHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHHHHHHHHHHHccCCCccCcC
Confidence            4789999999999999999999999 99999999999999995   9999999999999999999999888 77 59999


Q ss_pred             HHHHHHH-------HcCCCCcCC
Q 004972          695 RFLEERA-------TKGIPLSAP  710 (721)
Q Consensus       695 ~~l~~~~-------~~g~~f~~~  710 (721)
                      ++|++|+       |+|+|||+|
T Consensus       279 ~~l~~~~~~g~~G~k~g~Gfy~y  301 (302)
T 1f0y_A          279 PSLNKLVAENKFGKKTGEGFYKY  301 (302)
T ss_dssp             HHHHHHHHTTCCBTTTTBSSSBC
T ss_pred             HHHHHHHHcCCCccccCcEeeeC
Confidence            9999999       678999999

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=99.52  E-value=3.9e-15  Score=154.55  Aligned_cols=93  Identities=24%  Similarity=0.314  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCC-CCCCCHHH
Q 004972          619 EIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN-FFKPSRFL  697 (721)
Q Consensus       619 ~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~~~l  697 (721)
                      ++.||++.++++||+.++++|+  ++++||.++..|+|+|++..|||+++|.+|+|.++.+++.+++.+++ +|.|+++|
T Consensus       174 fi~Nrll~~~~~EA~~l~~~Gv--~~e~id~~~~~g~g~~~~~~GP~~l~D~~Gld~~~~~~~~l~~~~~~~~~~~~~~l  251 (293)
T 1zej_A          174 SLVNRFNAAVLSEASRMIEEGV--RAEDVDRVWKHHLGLLYTLFGPLGNLDYIGLDVAYYASLYLYKRFGDEKFKPPEWL  251 (293)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTC--CHHHHHHHHHTTHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCGGGSCCHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHhcCCCCCCCCCHHHHHHHhchHHHHHHHHHHHHHcCCCcCCCCHHH
Confidence            8999999999999999999998  79999999999999988788999999999999999999999999887 89999999


Q ss_pred             HHHH-------HcCCCCcCCCCC
Q 004972          698 EERA-------TKGIPLSAPVSS  713 (721)
Q Consensus       698 ~~~~-------~~g~~f~~~~~~  713 (721)
                      ++|+       |+|+|||+|++.
T Consensus       252 ~~~v~~G~lG~Ktg~Gfy~y~~~  274 (293)
T 1zej_A          252 QEKIKKGEVGVKAGKGIYEYGPK  274 (293)
T ss_dssp             HHHHHTTCCBGGGTBSSSBCCTT
T ss_pred             HHHHHCCCCccccCCEeeecCcc
Confidence            9999       689999999553

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=99.50  E-value=1.5e-13  Score=149.79  Aligned_cols=201  Identities=13%  Similarity=0.087  Sum_probs=133.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHH-HH--hhcCceeccCcccc
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKA-NN--ALKMLKGVLDYSEF  382 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~--~~~~i~~~~~~~~l  382 (721)
                      .|..|||+|.||.++|.+|+++||+|++||+++++++...+...       ....-.-++. ..  ..+++.+++++   
T Consensus        12 ~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~-------pi~epgl~~ll~~~~~~g~l~~ttd~---   81 (431)
T 3ojo_A           12 SKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQI-------SIEEPGLQEVYEEVLSSGKLKVSTTP---   81 (431)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCC-------SSCCTTHHHHHHHHHHTTCEEEESSC---
T ss_pred             CccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCC-------CcCCCCHHHHHHhhcccCceEEeCch---
Confidence            68999999999999999999999999999999999887643100       0000000000 00  12568888774   


Q ss_pred             CCCCEEEEcccCChH----------HHHHHHHHHHhhCCCCeEEEecCCCCCHHH---Hhccc-C-CCCcE-EEecC-CC
Q 004972          383 KDVDMVIEAVIESVP----------LKQKIFSELEKACPPHCILATNTSTIDLNI---VGEKT-S-SQDRI-IGAHF-FS  445 (721)
Q Consensus       383 ~~aDlVIeavpe~~~----------~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~---l~~~~-~-~~~r~-ig~h~-~~  445 (721)
                      ++||+||.|||.+..          ......+.+.++++++++|+. .||+++..   +...+ . ...++ ...++ ++
T Consensus        82 ~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~-~STV~pgtt~~v~~~i~e~~g~~~~~d~~v~~~  160 (431)
T 3ojo_A           82 EASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIV-ESTIAPKTMDDFVKPVIENLGFTIGEDIYLVHC  160 (431)
T ss_dssp             CCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEE-CSCCCTTHHHHTHHHHHHTTTCCBTTTEEEEEC
T ss_pred             hhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEE-ecCCChhHHHHHHHHHHHHcCCCcCCCeEEEEC
Confidence            589999999997652          456667889999999998875 44555432   22211 1 11110 00111 34


Q ss_pred             CCCCCCee---------EEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCC-c---hhhhhhh----hHHHHHHHHHHHc
Q 004972          446 PAHVMPLL---------EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCT-G---FAVNRAF----FPYSQSARLLVSL  508 (721)
Q Consensus       446 p~~~~~lv---------Eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~-g---fi~nRl~----~~~~~Ea~~l~~~  508 (721)
                      |....+.-         -|+.|.  ++++.+.++++++.+++.++++++.. +   -++|.++    .+++||+..+++.
T Consensus       161 Pe~~~~G~A~~~~~~p~~Iv~G~--~~~~~~~~~~ly~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~nE~~~l~e~  238 (431)
T 3ojo_A          161 PERVLPGKILEELVHNNRIIGGV--TKACIEAGKRVYRTFVQGEMIETDARTAEMSKLMENTYRDVNIALANELTKICNN  238 (431)
T ss_dssp             CCCCCTTSHHHHHHHSCEEEEES--SHHHHHHHHHHHTTTCCSCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcCCCcchhhcccCCCEEEEeC--CHHHHHHHHHHHHHHhCCcEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44333321         355553  68999999999999998888875421 1   2334443    4568999999988


Q ss_pred             -CCCHHHHHHHH
Q 004972          509 -GVDVFRIDSAI  519 (721)
Q Consensus       509 -Gv~~~~ID~a~  519 (721)
                       |+|+.++-.++
T Consensus       239 ~GiD~~~v~~~~  250 (431)
T 3ojo_A          239 LNINVLDVIEMA  250 (431)
T ss_dssp             TTCCHHHHHHHH
T ss_pred             cCCCHHHHHHHH
Confidence             99999999988

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=99.49  E-value=4.9e-13  Score=141.16  Aligned_cols=168  Identities=15%  Similarity=0.182  Sum_probs=114.2

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcc---c
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS---E  381 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~---~  381 (721)
                      |+||+|||+|.||+.+|..|+++|++|++||++++.++...+.      ...-.. ..    .....++..+++.+   .
T Consensus         3 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~------g~~~~~-~~----~~~~~~~~~~~~~~~~~~   71 (316)
T 2ew2_A            3 AMKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKN------GLIADF-NG----EEVVANLPIFSPEEIDHQ   71 (316)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH------CEEEEE-TT----EEEEECCCEECGGGCCTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhC------CEEEEe-CC----CeeEecceeecchhhccc
Confidence            4689999999999999999999999999999999887765321      000000 00    00001222233222   3


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH-HHHhcccCCCCcEE-EecCCCCCCCCC--------
Q 004972          382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKTSSQDRII-GAHFFSPAHVMP--------  451 (721)
Q Consensus       382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i-~~l~~~~~~~~r~i-g~h~~~p~~~~~--------  451 (721)
                      ++++|+||+|+|  .....++++++.+.++++++|++.++++.. ..+.+.+. +.+++ |.++...+..+|        
T Consensus        72 ~~~~d~vi~~v~--~~~~~~v~~~l~~~l~~~~~iv~~~~g~~~~~~l~~~~~-~~~vi~g~~~~~~~~~~p~~~~~~~~  148 (316)
T 2ew2_A           72 NEQVDLIIALTK--AQQLDAMFKAIQPMITEKTYVLCLLNGLGHEDVLEKYVP-KENILVGITMWTAGLEGPGRVKLLGD  148 (316)
T ss_dssp             SCCCSEEEECSC--HHHHHHHHHHHGGGCCTTCEEEECCSSSCTHHHHTTTSC-GGGEEEEEECCCCEEEETTEEEECSC
T ss_pred             CCCCCEEEEEec--cccHHHHHHHHHHhcCCCCEEEEecCCCCcHHHHHHHcC-CccEEEEEeeeeeEEcCCCEEEEecC
Confidence            348999999999  556788999999999999999988888776 45555554 33677 444433222222        


Q ss_pred             -eeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCC
Q 004972          452 -LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNC  486 (721)
Q Consensus       452 -lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~  486 (721)
                       .+.+.....++++..+.+.++++.+|..+++..|.
T Consensus       149 g~~~i~~~~~~~~~~~~~~~~ll~~~g~~~~~~~d~  184 (316)
T 2ew2_A          149 GEIELENIDPSGKKFALEVVDVFQKAGLNPSYSSNV  184 (316)
T ss_dssp             CCEEEEESSGGGHHHHHHHHHHHHHTTCCEEECTTH
T ss_pred             CcEEEeecCCCccHHHHHHHHHHHhCCCCcEEchhH
Confidence             12344444567899999999999999988777664

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=99.49  E-value=2.4e-13  Score=139.64  Aligned_cols=185  Identities=12%  Similarity=0.103  Sum_probs=130.8

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  383 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  383 (721)
                      ++||+|||+|.||..++..|.+.|++|++||+++++++...+..          |             +..++++ +.++
T Consensus         3 ~m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~----------g-------------~~~~~~~~~~~~   59 (259)
T 2ahr_A            3 AMKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQL----------A-------------LPYAMSHQDLID   59 (259)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHH----------T-------------CCBCSSHHHHHH
T ss_pred             ccEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHc----------C-------------CEeeCCHHHHHh
Confidence            35899999999999999999999999999999998876643210          1             2234444 4567


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCe-eEEecCCCCC
Q 004972          384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPL-LEIVRTERTS  462 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~l-vEiv~~~~t~  462 (721)
                      ++|+||+|+|  .....+++.++    .+++++++.++++++.++.+.+....+++..|+..|...... ..++++..++
T Consensus        60 ~~D~Vi~~v~--~~~~~~v~~~l----~~~~~vv~~~~~~~~~~l~~~~~~~~~~v~~~p~~~~~~~~g~~~i~~~~~~~  133 (259)
T 2ahr_A           60 QVDLVILGIK--PQLFETVLKPL----HFKQPIISMAAGISLQRLATFVGQDLPLLRIMPNMNAQILQSSTALTGNALVS  133 (259)
T ss_dssp             TCSEEEECSC--GGGHHHHHTTS----CCCSCEEECCTTCCHHHHHHHHCTTSCEEEEECCGGGGGTCEEEEEEECTTCC
T ss_pred             cCCEEEEEeC--cHhHHHHHHHh----ccCCEEEEeCCCCCHHHHHHhcCCCCCEEEEcCCchHHHcCceEEEEcCCCCC
Confidence            9999999999  45555565543    467788888888888888877765557888888877776653 5566777789


Q ss_pred             HHHHHHHHHHHHHcCCeeEEEcCCC-c-h-----hhhhhhhHHHHHHH-HHHHcCCCHHHHHHHH
Q 004972          463 AQVILDLMTVGKIIKKVPVVVGNCT-G-F-----AVNRAFFPYSQSAR-LLVSLGVDVFRIDSAI  519 (721)
Q Consensus       463 ~e~~~~~~~l~~~lG~~~v~v~d~~-g-f-----i~nRl~~~~~~Ea~-~l~~~Gv~~~~ID~a~  519 (721)
                      ++.++.+.++++.+| .++++++.. . +     -.|.++..+..... .....|++++++-.++
T Consensus       134 ~~~~~~~~~ll~~~G-~~~~~~~~~~d~~~al~g~~~~~~~~~~~~la~~~~~~Gl~~~~~~~~~  197 (259)
T 2ahr_A          134 QELQARVRDLTDSFG-STFDISEKDFDTFTALAGSSPAYIYLFIEALAKAGVKNGIPKAKALEIV  197 (259)
T ss_dssp             HHHHHHHHHHHHTTE-EEEECCGGGHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCC-CEEEecHHHccHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            999999999999999 577776521 0 0     01222233332221 2344588877766665

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=99.49  E-value=8.5e-14  Score=146.29  Aligned_cols=186  Identities=16%  Similarity=0.140  Sum_probs=130.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      +||+|||+|.||..+|..|++.|++|++||++++.++...+           .|             +...+++ +.+++
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~~   60 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVA-----------QG-------------AQACENNQKVAAA   60 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHT-----------TT-------------CEECSSHHHHHHH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH-----------CC-------------CeecCCHHHHHhC
Confidence            58999999999999999999999999999999988765421           11             3334455 45678


Q ss_pred             CCEEEEcccCChHHHHHHH--HHHHhhCCCCeEEEecCCCCC--HHHHhcccCC-CCcEEEecCCCCCC----CCCeeEE
Q 004972          385 VDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTID--LNIVGEKTSS-QDRIIGAHFFSPAH----VMPLLEI  455 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~--~~l~~~~~~~~ii~s~ts~~~--i~~l~~~~~~-~~r~ig~h~~~p~~----~~~lvEi  455 (721)
                      +|+||+|+|.+..++..+.  .++.+.++++++|++.+++.+  ..++.+.+.. ..+++.. +..+..    ...+..+
T Consensus        61 ~D~vi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~~~~~-p~~~~~~~a~~g~~~~~  139 (301)
T 3cky_A           61 SDIIFTSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDA-PVSGGTKGAEAGTLTIM  139 (301)
T ss_dssp             CSEEEECCSSHHHHHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCEEEEC-CEESHHHHHHHTCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEc-cCCCCHHHHHcCCeEEE
Confidence            9999999986555544433  278888899999988777763  3455554432 2344432 211110    0122333


Q ss_pred             ecCCCCCHHHHHHHHHHHHHcCCeeEEEcC-CCc----hhhhhh---hhHHHHHHHHHHHc-CCCHHHHHHHH
Q 004972          456 VRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTG----FAVNRA---FFPYSQSARLLVSL-GVDVFRIDSAI  519 (721)
Q Consensus       456 v~~~~t~~e~~~~~~~l~~~lG~~~v~v~d-~~g----fi~nRl---~~~~~~Ea~~l~~~-Gv~~~~ID~a~  519 (721)
                      +.+   +++.++.+.++++.+|..++++++ ..|    ++.|.+   +...++|++.+.+. |+++++++.++
T Consensus       140 ~~g---~~~~~~~v~~ll~~~g~~~~~~~~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~  209 (301)
T 3cky_A          140 VGA---SEAVFEKIQPVLSVIGKDIYHVGDTGAGDAVKIVNNLLLGCNMASLAEALVLGVKCGLKPETMQEII  209 (301)
T ss_dssp             EES---CHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             ECC---CHHHHHHHHHHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            443   789999999999999999888865 333    335655   34467899988876 99999998887

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=99.48  E-value=2.6e-13  Score=149.08  Aligned_cols=202  Identities=16%  Similarity=0.130  Sum_probs=134.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHH-HHH--hhcCceeccCc-cc
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDK-ANN--ALKMLKGVLDY-SE  381 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~--~~~~i~~~~~~-~~  381 (721)
                      -+|+|||+|.||.++|..|+++|++|++||+++++++...+....    ..+.|   -.+ ...  ..+++++++++ ++
T Consensus         9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~----~~epg---l~~~~~~~~~~g~l~~ttd~~ea   81 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMP----IYEPG---LDALVASNVKAGRLSFTTDLAEG   81 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCS----SCCTT---HHHHHHHHHHTTCEEEESCHHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCC----ccCCC---HHHHHHhhcccCCEEEECCHHHH
Confidence            379999999999999999999999999999999998875321000    00000   000 000  12568889998 67


Q ss_pred             cCCCCEEEEcccCChH---------HHHHHHHHHHhhCCCCeEEEecCCCCCHH---HHhcccC----CCCcEEEecCCC
Q 004972          382 FKDVDMVIEAVIESVP---------LKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTS----SQDRIIGAHFFS  445 (721)
Q Consensus       382 l~~aDlVIeavpe~~~---------~k~~v~~~l~~~~~~~~ii~s~ts~~~i~---~l~~~~~----~~~r~ig~h~~~  445 (721)
                      +++||+||.|||.+..         ..+++++++.++++++++|++. ||+++.   ++...+.    ...-.+.   ++
T Consensus        82 ~~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~-STv~pgtt~~l~~~l~e~~~~~d~~v~---~~  157 (446)
T 4a7p_A           82 VKDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTK-STVPVGTGDEVERIIAEVAPNSGAKVV---SN  157 (446)
T ss_dssp             HTTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEEC-SCCCTTHHHHHHHHHHHHSTTSCCEEE---EC
T ss_pred             HhcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEe-CCCCchHHHHHHHHHHHhCCCCCceEE---eC
Confidence            8999999999987653         5788889999999999988764 455543   2222211    1111122   23


Q ss_pred             CCCCCCee---------EEecCCCCCHHHHHHHHHHHHHcCCe---eEEEcCCC-----chhhhhh---hhHHHHHHHHH
Q 004972          446 PAHVMPLL---------EIVRTERTSAQVILDLMTVGKIIKKV---PVVVGNCT-----GFAVNRA---FFPYSQSARLL  505 (721)
Q Consensus       446 p~~~~~lv---------Eiv~~~~t~~e~~~~~~~l~~~lG~~---~v~v~d~~-----gfi~nRl---~~~~~~Ea~~l  505 (721)
                      |....+.-         -++.|. .++++.+.+.++++.+++.   ++++++..     +++.|-+   ..+++||+..+
T Consensus       158 Pe~a~eG~a~~d~~~p~~ivvG~-~~~~~~~~~~~ly~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~l  236 (446)
T 4a7p_A          158 PEFLREGAAIEDFKRPDRVVVGT-EDEFARQVMREIYRPLSLNQSAPVLFTGRRTSELIKYAANAFLAVKITFINEIADL  236 (446)
T ss_dssp             CCCCCTTSHHHHHHSCSCEEEEC-SCHHHHHHHHHHHCSCC-----CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhhccCCCEEEEeC-CcHHHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33322221         234332 3689999999999999875   57776532     2333443   34568999999


Q ss_pred             HHc-CCCHHHHHHHH
Q 004972          506 VSL-GVDVFRIDSAI  519 (721)
Q Consensus       506 ~~~-Gv~~~~ID~a~  519 (721)
                      ++. |++++++-.++
T Consensus       237 ~~~~GiD~~~v~~~~  251 (446)
T 4a7p_A          237 CEQVGADVQEVSRGI  251 (446)
T ss_dssp             HHHTTCCHHHHHHHH
T ss_pred             HHHcCCCHHHHHHHH
Confidence            988 99999999998

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=99.48  E-value=4.7e-14  Score=151.11  Aligned_cols=174  Identities=10%  Similarity=0.042  Sum_probs=120.4

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  383 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  383 (721)
                      .+||+|||+|.||.++|..|+++|++|++||+++++++.+.+           .|             +..++++ +.++
T Consensus        22 ~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~-----------~g-------------~~~~~s~~e~~~   77 (358)
T 4e21_A           22 SMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALER-----------EG-------------IAGARSIEEFCA   77 (358)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHT-----------TT-------------CBCCSSHHHHHH
T ss_pred             CCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH-----------CC-------------CEEeCCHHHHHh
Confidence            468999999999999999999999999999999998776421           12             3334455 4456


Q ss_pred             CC---CEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH--HHhcccC-CCCcEEEecCCCCC---CCCCeeE
Q 004972          384 DV---DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLLE  454 (721)
Q Consensus       384 ~a---DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~--~l~~~~~-~~~r~ig~h~~~p~---~~~~lvE  454 (721)
                      ++   |+||+|||.+  ...+++.++.+.++++++|++.+++.+..  .+.+.+. ...+|+....+.++   ..++  .
T Consensus        78 ~a~~~DvVi~~vp~~--~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg~~~a~~G~--~  153 (358)
T 4e21_A           78 KLVKPRVVWLMVPAA--VVDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGGIFGLERGY--C  153 (358)
T ss_dssp             HSCSSCEEEECSCGG--GHHHHHHHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECGGGHHHHCC--E
T ss_pred             cCCCCCEEEEeCCHH--HHHHHHHHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCCHHHHhcCC--e
Confidence            67   9999999966  66778899999999999998877665433  3333332 23345543222211   1112  2


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcC--------------------CeeEEEcC-CCchhh---hh-hh---hHHHHHHHHHH
Q 004972          455 IVRTERTSAQVILDLMTVGKIIK--------------------KVPVVVGN-CTGFAV---NR-AF---FPYSQSARLLV  506 (721)
Q Consensus       455 iv~~~~t~~e~~~~~~~l~~~lG--------------------~~~v~v~d-~~gfi~---nR-l~---~~~~~Ea~~l~  506 (721)
                      ++.+  .++++++.++++++.+|                    +.++++++ ..|..+   |. +.   ...++|++.++
T Consensus       154 im~G--G~~~a~~~~~~ll~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~i~~~aE~~~la  231 (358)
T 4e21_A          154 LMIG--GEKQAVERLDPVFRTLAPGIGAAPRTPGREKREGTAELGYLHCGPSGAGHFVKMVHNGIEYGLMAAYAEGLNIL  231 (358)
T ss_dssp             EEEE--SCHHHHHHTHHHHHHHSCCGGGSCCCTTGGGCCSSGGGTEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeec--CCHHHHHHHHHHHHHhccccccCcccccccccccccccceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4443  27899999999999999                    57888876 334333   22 22   23356999999


Q ss_pred             Hc
Q 004972          507 SL  508 (721)
Q Consensus       507 ~~  508 (721)
                      +.
T Consensus       232 ~~  233 (358)
T 4e21_A          232 HH  233 (358)
T ss_dssp             HT
T ss_pred             Hh
Confidence            87

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=99.47  E-value=7.5e-13  Score=146.22  Aligned_cols=202  Identities=15%  Similarity=0.114  Sum_probs=136.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHH-HHH--hhcCceeccCcc-c
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDK-ANN--ALKMLKGVLDYS-E  381 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~--~~~~i~~~~~~~-~  381 (721)
                      +||+|||+|.||.++|..|+++|++|++||+++++++...+....    ....+   -.+ ...  ..+++.++++++ .
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~----i~e~g---l~~~l~~~~~~~~l~~t~d~~ea   75 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIP----IYEPG---LEKMIARNVKAGRLRFGTEIEQA   75 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSC----CCSTT---HHHHHHHHHHTTSEEEESCHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCc----ccCCC---HHHHHHhhcccCcEEEECCHHHH
Confidence            589999999999999999999999999999999998875431000    00000   000 000  135688888884 5


Q ss_pred             cCCCCEEEEcccCCh--------HHHHHHHHHHHhhCCCCeEEEecCCCCCHH---HHhcccCC--C-----Cc-EEEec
Q 004972          382 FKDVDMVIEAVIESV--------PLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSS--Q-----DR-IIGAH  442 (721)
Q Consensus       382 l~~aDlVIeavpe~~--------~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~---~l~~~~~~--~-----~r-~ig~h  442 (721)
                      +++||+||+|||.+.        ....++++++.++++++++|++.+ ++++.   ++...+..  +     .. .+.  
T Consensus        76 ~~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~S-Tv~pgt~~~l~~~l~~~~~~~~~~~d~~v~--  152 (450)
T 3gg2_A           76 VPEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKS-TVPVGSYRLIRKAIQEELDKREVLIDFDIA--  152 (450)
T ss_dssp             GGGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECS-CCCTTHHHHHHHHHHHHHHHTTCCCCEEEE--
T ss_pred             HhcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEee-eCCCcchHHHHHHHHHhccccCcCcceeEE--
Confidence            899999999998664        377888899999999999887644 44432   22222210  0     11 111  


Q ss_pred             CCCCCCCCCee---------EEecCCCCCHHHHHHHHHHHHHcCC--eeEEEcCCC-----chhhhhh---hhHHHHHHH
Q 004972          443 FFSPAHVMPLL---------EIVRTERTSAQVILDLMTVGKIIKK--VPVVVGNCT-----GFAVNRA---FFPYSQSAR  503 (721)
Q Consensus       443 ~~~p~~~~~lv---------Eiv~~~~t~~e~~~~~~~l~~~lG~--~~v~v~d~~-----gfi~nRl---~~~~~~Ea~  503 (721)
                       ++|....+..         -++.|. .++++.+.+.++++.+++  .++++++..     +++.|-+   ..+++||+.
T Consensus       153 -~~Pe~a~eG~~~~~~~~p~~ivvG~-~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~  230 (450)
T 3gg2_A          153 -SNPEFLKEGNAIDDFMKPDRVVVGV-DSDRARELITSLYKPMLLNNFRVLFMDIASAEMTKYAANAMLATRISFMNDVA  230 (450)
T ss_dssp             -ECCCCCCTTSHHHHHHSCSCEEEEE-SSHHHHHHHHHHHTTTCCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -echhhhcccchhhhccCCCEEEEEc-CCHHHHHHHHHHHHHHhcCCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             2344333322         134332 368999999999999987  366666533     3455553   356689999


Q ss_pred             HHHHc-CCCHHHHHHHH
Q 004972          504 LLVSL-GVDVFRIDSAI  519 (721)
Q Consensus       504 ~l~~~-Gv~~~~ID~a~  519 (721)
                      .+++. |++++++-.++
T Consensus       231 ~l~~~~Gid~~~v~~~~  247 (450)
T 3gg2_A          231 NLCERVGADVSMVRLGI  247 (450)
T ss_dssp             HHHHHHTCCHHHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHH
Confidence            99988 99999999998

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=99.47  E-value=1.5e-13  Score=153.07  Aligned_cols=202  Identities=16%  Similarity=0.167  Sum_probs=139.1

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHC--CCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCC--HHHHHHh-----hcCcee
Q 004972          305 VRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT--QDKANNA-----LKMLKG  375 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~-----~~~i~~  375 (721)
                      |+||+|||+|.||.++|..|+++  |++|++||+++++++...+            +...  ....+..     ..++.+
T Consensus         5 ~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~------------g~~~i~e~~l~~~~~~~~~~~~~~   72 (467)
T 2q3e_A            5 IKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNS------------PTLPIYEPGLKEVVESCRGKNLFF   72 (467)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTS------------SSCSSCCTTHHHHHHHHBTTTEEE
T ss_pred             ccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhC------------CCCCcCCCCHHHHHHHhhcCCEEE
Confidence            56999999999999999999998  8999999999998776421            1110  0000001     135777


Q ss_pred             ccCc-cccCCCCEEEEcccCChHH-------------HHHHHHHHHhhCCCCeEEEecCCCCCHH---HHhcccCCC-Cc
Q 004972          376 VLDY-SEFKDVDMVIEAVIESVPL-------------KQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSSQ-DR  437 (721)
Q Consensus       376 ~~~~-~~l~~aDlVIeavpe~~~~-------------k~~v~~~l~~~~~~~~ii~s~ts~~~i~---~l~~~~~~~-~r  437 (721)
                      ++++ +.+++||+||+|||++...             ...+.+++.++++++++|+. +|+.++.   ++...+... ..
T Consensus        73 t~~~~e~~~~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~-~STv~~g~~~~l~~~l~~~~~~  151 (467)
T 2q3e_A           73 STNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTE-KSTVPVRAAESIRRIFDANTKP  151 (467)
T ss_dssp             ESCHHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEE-CSCCCTTHHHHHHHHHHHTCCT
T ss_pred             ECCHHHHHhcCCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEE-CCcCCchHHHHHHHHHHHhCCC
Confidence            7776 5678999999999865532             46777888888899988864 3344432   233333211 11


Q ss_pred             EEEec-CCCCCCCCCeeE---------E-ecCCC--CCHHHHHHHHHHHHHc-CCeeEEEcC-----CCchhhhhh---h
Q 004972          438 IIGAH-FFSPAHVMPLLE---------I-VRTER--TSAQVILDLMTVGKII-KKVPVVVGN-----CTGFAVNRA---F  495 (721)
Q Consensus       438 ~ig~h-~~~p~~~~~lvE---------i-v~~~~--t~~e~~~~~~~l~~~l-G~~~v~v~d-----~~gfi~nRl---~  495 (721)
                      .+..+ .++|....+...         + +.++.  +++++.+.+.++++.+ |+.++++++     ..+++.|.+   .
T Consensus       152 ~~d~~V~~~Pe~~~~G~~~~d~~~~~rivvGg~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~ae~~Kl~~N~~~a~~  231 (467)
T 2q3e_A          152 NLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQR  231 (467)
T ss_dssp             TCEEEEEECCCCCCTTSHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHHTTTSCGGGEEEECHHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEeCHHHhhcccchhhccCCCEEEECCCCCCCCHHHHHHHHHHHHHhccCCeEEecCHHHHHHHHHHHHHHHHHH
Confidence            11111 245555554432         3 34433  3788999999999998 778888765     346777876   3


Q ss_pred             hHHHHHHHHHHHc-CCCHHHHHHHH
Q 004972          496 FPYSQSARLLVSL-GVDVFRIDSAI  519 (721)
Q Consensus       496 ~~~~~Ea~~l~~~-Gv~~~~ID~a~  519 (721)
                      .+++||+..+++. |++++++..++
T Consensus       232 ia~~nE~~~l~~~~Gid~~~v~~~~  256 (467)
T 2q3e_A          232 ISSINSISALCEATGADVEEVATAI  256 (467)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            6778999999988 99999999998

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=99.47  E-value=4.6e-13  Score=145.76  Aligned_cols=196  Identities=16%  Similarity=0.190  Sum_probs=133.3

Q ss_pred             CceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHh----hcCceeccCc
Q 004972          304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNA----LKMLKGVLDY  379 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~i~~~~~~  379 (721)
                      .++||+|||+|.||.++|..|++ |++|++||+++++++.+.+..          ..+.....+..    ..++.+++++
T Consensus        35 ~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~----------~~i~e~~l~~ll~~~~~~l~~ttd~  103 (432)
T 3pid_A           35 EFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKI----------SPIVDKEIQEYLAEKPLNFRATTDK  103 (432)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTC----------CSSCCHHHHHHHHHSCCCEEEESCH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccC----------CccccccHHHHHhhccCCeEEEcCH
Confidence            46799999999999999999998 999999999999988764310          01111111111    2368888887


Q ss_pred             -cccCCCCEEEEcccCCh---------HHHHHHHHHHHhhCCCCeEEEecCCCCCHH---HHhcccCCCCcEEEecCCCC
Q 004972          380 -SEFKDVDMVIEAVIESV---------PLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSP  446 (721)
Q Consensus       380 -~~l~~aDlVIeavpe~~---------~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~---~l~~~~~~~~r~ig~h~~~p  446 (721)
                       +++++||+||+|||++.         .....+.+++.+ ++++++|+. .|++++.   ++...+..  ..+  . ++|
T Consensus       104 ~ea~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~-~STv~pgtt~~l~~~l~~--~~v--~-~sP  176 (432)
T 3pid_A          104 HDAYRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMII-KSTIPVGFTRDIKERLGI--DNV--I-FSP  176 (432)
T ss_dssp             HHHHTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEE-CSCCCTTHHHHHHHHHTC--CCE--E-ECC
T ss_pred             HHHHhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEE-eCCCChHHHHHHHHHHhh--ccE--e-ecC
Confidence             67899999999999864         356777888888 888888874 5555543   44443322  222  2 266


Q ss_pred             CCCCCee---------EEecCCCCCHHHHHHHHHHHHH--cCC-eeEEEcCC-----Cchhhhhh---hhHHHHHHHHHH
Q 004972          447 AHVMPLL---------EIVRTERTSAQVILDLMTVGKI--IKK-VPVVVGNC-----TGFAVNRA---FFPYSQSARLLV  506 (721)
Q Consensus       447 ~~~~~lv---------Eiv~~~~t~~e~~~~~~~l~~~--lG~-~~v~v~d~-----~gfi~nRl---~~~~~~Ea~~l~  506 (721)
                      ....+.-         .|+.|.  +++..+.+.+++..  ++. .++++.+.     ..++.|-+   ..+++||+..++
T Consensus       177 e~~~~G~A~~~~l~p~rIvvG~--~~~~~~~~~~ll~~~~~~~~~~v~~~~~~~AE~~Kl~~N~~~a~~Ia~~nEl~~la  254 (432)
T 3pid_A          177 EFLREGRALYDNLHPSRIVIGE--RSARAERFADLLKEGAIKQDIPTLFTDSTEAEAIKLFANTYLALRVAYFNELDSYA  254 (432)
T ss_dssp             CCCCTTSHHHHHHSCSCEEESS--CSHHHHHHHHHHHHHCSSSSCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCcchhhhcccCCceEEecC--CHHHHHHHHHHHHhhhccCCCeEEecCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6554431         244443  45677888999986  553 35665541     12344443   256789999999


Q ss_pred             Hc-CCCHHHHHHHH
Q 004972          507 SL-GVDVFRIDSAI  519 (721)
Q Consensus       507 ~~-Gv~~~~ID~a~  519 (721)
                      +. |+++.++-.++
T Consensus       255 e~~GiD~~~v~~~~  268 (432)
T 3pid_A          255 ESQGLNSKQIIEGV  268 (432)
T ss_dssp             HHTTCCHHHHHHHH
T ss_pred             HHcCCCHHHHHHHH
Confidence            88 99999998888

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=99.47  E-value=9.6e-13  Score=136.66  Aligned_cols=155  Identities=17%  Similarity=0.172  Sum_probs=115.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  385 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  385 (721)
                      +||+|||+|.||+++|..|.+.|++|++||++++.++.+.           +.|..           ...+++++.+.+|
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~-----------~~g~~-----------~~~~~~~~~~~~~   58 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAV-----------ERQLV-----------DEAGQDLSLLQTA   58 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------HTTSC-----------SEEESCGGGGTTC
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------hCCCC-----------ccccCCHHHhCCC
Confidence            3799999999999999999999999999999998876542           11210           1234455333899


Q ss_pred             CEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCC------------CCCee
Q 004972          386 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAH------------VMPLL  453 (721)
Q Consensus       386 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~------------~~~lv  453 (721)
                      |+||+|+|  .....+++.++.+.++++++|++. ++.....+........++++.||.....            .++.+
T Consensus        59 D~vi~av~--~~~~~~~~~~l~~~~~~~~~vv~~-~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~gp~~a~~~~~~g~~~  135 (279)
T 2f1k_A           59 KIIFLCTP--IQLILPTLEKLIPHLSPTAIVTDV-ASVKTAIAEPASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPY  135 (279)
T ss_dssp             SEEEECSC--HHHHHHHHHHHGGGSCTTCEEEEC-CSCCHHHHHHHHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEE
T ss_pred             CEEEEECC--HHHHHHHHHHHHhhCCCCCEEEEC-CCCcHHHHHHHHHHhCCEeecCcccCCccCCHHHHhHHHhCCCcE
Confidence            99999999  667888999999999999988765 4444433332222223899999875221            23356


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004972          454 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGN  485 (721)
Q Consensus       454 Eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d  485 (721)
                      .++++..++++..+.+.++++.+|..++++.+
T Consensus       136 ~~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~  167 (279)
T 2f1k_A          136 VLTPTEYTDPEQLACLRSVLEPLGVKIYLCTP  167 (279)
T ss_dssp             EEEECTTCCHHHHHHHHHHHGGGTCEEEECCH
T ss_pred             EEecCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence            77787778999999999999999999988865

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=99.46  E-value=6.6e-14  Score=146.76  Aligned_cols=182  Identities=18%  Similarity=0.133  Sum_probs=125.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      +||+|||+|.||.++|..|++.|++|++||+++++++...+           .|             +..+++. +.+++
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~~   56 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQD-----------AG-------------EQVVSSPADVAEK   56 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHT-----------TT-------------CEECSSHHHHHHH
T ss_pred             CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----------cC-------------CeecCCHHHHHhc
Confidence            37999999999999999999999999999999988765421           11             3444555 45788


Q ss_pred             CCEEEEcccCChHHHHHHHHH---HHhhCCCCeEEEecCCCCCHHHHhcc---cCCCCcEEEecCCCCC-CCC------C
Q 004972          385 VDMVIEAVIESVPLKQKIFSE---LEKACPPHCILATNTSTIDLNIVGEK---TSSQDRIIGAHFFSPA-HVM------P  451 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~---l~~~~~~~~ii~s~ts~~~i~~l~~~---~~~~~r~ig~h~~~p~-~~~------~  451 (721)
                      +|+||+|+|.+... +.++.+   +.+.++++++|++ ++++.+......   +...    +.+|.+.| ..+      +
T Consensus        57 ~Dvvi~~vp~~~~~-~~v~~~~~~~~~~l~~~~~vv~-~s~~~~~~~~~~~~~~~~~----g~~~~~~p~~~g~~~a~~~  130 (296)
T 2gf2_A           57 ADRIITMLPTSINA-IEAYSGANGILKKVKKGSLLID-SSTIDPAVSKELAKEVEKM----GAVFMDAPVSGGVGAARSG  130 (296)
T ss_dssp             CSEEEECCSSHHHH-HHHHHSTTSGGGTCCTTCEEEE-CSCCCHHHHHHHHHHHHHT----TCEEEECCEESHHHHHHHT
T ss_pred             CCEEEEeCCCHHHH-HHHHhCchhHHhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHc----CCEEEEcCCCCChhHHhcC
Confidence            99999999855444 445554   3346678888888 788877644322   2211    22333322 111      1


Q ss_pred             eeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCC-ch---hhhhhhh----HHHHHHHHHHHc-CCCHHHHHHHH
Q 004972          452 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCT-GF---AVNRAFF----PYSQSARLLVSL-GVDVFRIDSAI  519 (721)
Q Consensus       452 lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~-gf---i~nRl~~----~~~~Ea~~l~~~-Gv~~~~ID~a~  519 (721)
                      .+.++.+  .+++.++.+.++++.+|..++++++.. |.   ++|+.+.    .+++|++.+.+. |+++++++.++
T Consensus       131 ~~~~~~~--~~~~~~~~v~~l~~~~g~~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~~~~~~G~~~~~~~~~~  205 (296)
T 2gf2_A          131 NLTFMVG--GVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKIL  205 (296)
T ss_dssp             CEEEEEE--SCGGGHHHHHHHHTTTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             cEEEEeC--CCHHHHHHHHHHHHHHcCCeEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            2334444  368889999999999999998886621 21   3344442    468899998876 99999999988

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=99.46  E-value=7.1e-13  Score=137.80  Aligned_cols=155  Identities=15%  Similarity=0.160  Sum_probs=116.9

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cc
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  381 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  381 (721)
                      |+||+|||+|.||.++|..|++.|+  +|++||++++.++.+.           +.|..           ...+++. +.
T Consensus         1 m~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~-----------~~g~~-----------~~~~~~~~~~   58 (281)
T 2g5c_A            1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV-----------DLGII-----------DEGTTSIAKV   58 (281)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH-----------HTTSC-----------SEEESCGGGG
T ss_pred             CcEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH-----------HCCCc-----------ccccCCHHHH
Confidence            4689999999999999999999999  9999999998876542           11211           1123445 56


Q ss_pred             cC-CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCC--HHHHhcccCCCCcEEEecCCCCCC----------
Q 004972          382 FK-DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAH----------  448 (721)
Q Consensus       382 l~-~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--i~~l~~~~~~~~r~ig~h~~~p~~----------  448 (721)
                      ++ +||+||+|||  .....+++.++.+.++++++|++.+++..  ...+.+.+..  ++++.||+..+.          
T Consensus        59 ~~~~aDvVilavp--~~~~~~v~~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~--~~v~~~p~~~~~~~gp~~a~~~  134 (281)
T 2g5c_A           59 EDFSPDFVMLSSP--VRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGK--RFVGGHPIAGTEKSGVEYSLDN  134 (281)
T ss_dssp             GGTCCSEEEECSC--HHHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG--GEECEEEECCCSCCSGGGCCSS
T ss_pred             hcCCCCEEEEcCC--HHHHHHHHHHHHhhCCCCcEEEECCCCcHHHHHHHHHhccc--cceeeccccCCccCChhhhhhH
Confidence            78 9999999999  66677888899888999988876444332  2344444432  488888865432          


Q ss_pred             --CCCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004972          449 --VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN  485 (721)
Q Consensus       449 --~~~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d  485 (721)
                        .+..+.++++..++++.++.+.++++.+|..++++++
T Consensus       135 l~~g~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~  173 (281)
T 2g5c_A          135 LYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEYMSP  173 (281)
T ss_dssp             TTTTCEEEECCCSSSCHHHHHHHHHHHHHTTCEEEECCH
T ss_pred             HhCCCCEEEecCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence              3445777888788999999999999999999888865

>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=99.46  E-value=1.2e-13  Score=143.41  Aligned_cols=157  Identities=17%  Similarity=0.160  Sum_probs=123.5

Q ss_pred             EEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHH
Q 004972           15 VAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL   93 (721)
Q Consensus        15 v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (721)
                      |+++..+.. ..|+++..+.+.+.++++.+.++ .+.+|+|++.|     |+|+.+....        + ..+..++ ..
T Consensus       120 V~v~a~d~~~~ggslg~~~~~Ki~r~~e~A~~~-~~PvI~l~~sG-----Garlqeg~~~--------l-~~~~~i~-~a  183 (304)
T 2f9y_B          120 VVAAAFEFAFMGGSMGSVVGARFVRAVEQALED-NCPLICFSASG-----GARMQEALMS--------L-MQMAKTS-AA  183 (304)
T ss_dssp             CBEEEECTTSTTTCBCTHHHHHHHHHHHHHHHH-TCCEEEEEEES-----SBCGGGTHHH--------H-HHHHHHH-HH
T ss_pred             EEEEEEcCccccCCCCHHHHHHHHHHHHHHHhC-CCCEEEEECCC-----CcCHHHHHHH--------H-HHHHHHH-HH
Confidence            444444444 35999999999999999999987 89999999876     8888654310        1 1222333 33


Q ss_pred             H---hhCCCcEEEEECCcccccc-hHhhhhcCEEEeeCCceEeCcccccCccccccccccccCHHHHHHHHHcCCCcCHH
Q 004972           94 I---EDCKKPIVAAVEGLALGGG-LELAMGCHARIAAPKTQLGLPELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSE  169 (721)
Q Consensus        94 l---~~~~~p~Iaav~G~a~GgG-~~lalacD~ria~~~a~~~~pe~~~Gl~P~~~~l~r~~G~~~a~~l~ltg~~~~a~  169 (721)
                      +   ...++|+|++|+|.|+||| +.++++||++||.++|+|++.        |...+++.+|..      ++++..+|+
T Consensus       184 l~~~~~~~vP~IavV~G~~~GGg~a~~a~~~D~via~~~A~i~v~--------Gp~~i~~~ig~~------l~~~~~~Ae  249 (304)
T 2f9y_B          184 LAKMQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFA--------GPRVIEQTVREK------LPPGFQRSE  249 (304)
T ss_dssp             HHHHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESS--------CHHHHHHHHTSC------CCTTTTBHH
T ss_pred             HHHHhcCCCCEEEEEECCCccHHHHHHHhcCCEEEEeCCcEEEee--------cHHHHHHHhCcc------CCcccCCHH
Confidence            4   4459999999999999999 788999999999999999987        334445555542      468889999


Q ss_pred             HHHHcCCccEEcCCchHHHHHHHHHHHHHhcC
Q 004972          170 EGWKLGLIDAVVTSEELLKVSRLWALDIAARR  201 (721)
Q Consensus       170 eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~  201 (721)
                      ++.++|+||.|++++++.+.+.+++..++..+
T Consensus       250 ~~~~~Glvd~Vv~~~el~~~l~~ll~~l~~~~  281 (304)
T 2f9y_B          250 FLIEKGAIDMIVRRPEMRLKLASILAKLMNLP  281 (304)
T ss_dssp             HHGGGTCCSEECCHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHhcCCccEEeCcHHHHHHHHHHHHHhhcCC
Confidence            99999999999999999999999999987653

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=99.46  E-value=2.2e-13  Score=150.65  Aligned_cols=201  Identities=14%  Similarity=0.077  Sum_probs=134.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHh------hcCceeccCc
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNA------LKMLKGVLDY  379 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~------~~~i~~~~~~  379 (721)
                      +||+|||+|.||.++|..|+++|++|++||+++++++...+..          -.+.....+..      .+++.+++++
T Consensus         1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~----------~~i~e~~l~~~~~~~~~~g~l~~t~~~   70 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGK----------SPIVEPGLEALLQQGRQTGRLSGTTDF   70 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTC----------CSSCCTTHHHHHHHHHHTTCEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCC----------CCcCCCCHHHHHHhhcccCceEEeCCH
Confidence            3899999999999999999999999999999999887653210          00000000100      2457788887


Q ss_pred             -cccCCCCEEEEcccCChH--------HHHHHHHHHHhhCCC---CeEEEecCCCCCHHH----HhcccCC--CCcE-EE
Q 004972          380 -SEFKDVDMVIEAVIESVP--------LKQKIFSELEKACPP---HCILATNTSTIDLNI----VGEKTSS--QDRI-IG  440 (721)
Q Consensus       380 -~~l~~aDlVIeavpe~~~--------~k~~v~~~l~~~~~~---~~ii~s~ts~~~i~~----l~~~~~~--~~r~-ig  440 (721)
                       +.+++||+||+|||.+..        ...++++++.+++++   +++|+.. |+.++..    +...+..  ..++ +.
T Consensus        71 ~~~~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~-Stv~~g~t~~~l~~~l~~~~g~~~~~~  149 (436)
T 1mv8_A           71 KKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVR-STVLPGTVNNVVIPLIEDCSGKKAGVD  149 (436)
T ss_dssp             HHHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEEC-SCCCTTHHHHTHHHHHHHHHSCCBTTT
T ss_pred             HHHhccCCEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEe-CCcCCCchHHHHHHHHHHhcCcccCCc
Confidence             468999999999986553        255677889988888   8887643 3433322    2222211  1111 00


Q ss_pred             ec-CCCCCCCCCee---------EEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC-----CCchhhhhhh---hHHHHHH
Q 004972          441 AH-FFSPAHVMPLL---------EIVRTERTSAQVILDLMTVGKIIKKVPVVVGN-----CTGFAVNRAF---FPYSQSA  502 (721)
Q Consensus       441 ~h-~~~p~~~~~lv---------Eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d-----~~gfi~nRl~---~~~~~Ea  502 (721)
                      .+ .++|....+..         .++.|. ++++..+.+.++++.+|.. +++.+     ..+++.|.+.   .+++||+
T Consensus       150 ~~v~~~Pe~~~~G~~~~~~~~~~~iv~G~-~~~~~~~~~~~l~~~~~~~-v~~~~~~~ae~~Kl~~N~~~a~~ia~~nE~  227 (436)
T 1mv8_A          150 FGVGTNPEFLRESTAIKDYDFPPMTVIGE-LDKQTGDLLEEIYRELDAP-IIRKTVEVAEMIKYTCNVWHAAKVTFANEI  227 (436)
T ss_dssp             BEEEECCCCCCTTSHHHHHHSCSCEEEEE-SSHHHHHHHHHHHTTSSSC-EEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECcccccccccchhccCCCEEEEEc-CCHHHHHHHHHHHhccCCC-EEcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00 13455444432         244443 3689999999999999984 44444     3346667653   5788999


Q ss_pred             HHHHHc-CCCHHHHHHHH
Q 004972          503 RLLVSL-GVDVFRIDSAI  519 (721)
Q Consensus       503 ~~l~~~-Gv~~~~ID~a~  519 (721)
                      ..+++. |++++++..++
T Consensus       228 ~~l~~~~Gid~~~v~~~~  245 (436)
T 1mv8_A          228 GNIAKAVGVDGREVMDVI  245 (436)
T ss_dssp             HHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHh
Confidence            999987 99999999998

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=99.46  E-value=3.3e-13  Score=141.67  Aligned_cols=188  Identities=18%  Similarity=0.204  Sum_probs=128.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      +||+|||+|.||..+|..|++.|++|++||++++.++...+           .|             +..++++ +.+++
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~~   61 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIA-----------AG-------------AETASTAKAIAEQ   61 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TT-------------CEECSSHHHHHHH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH-----------CC-------------CeecCCHHHHHhC
Confidence            48999999999999999999999999999999988765421           12             3334555 45788


Q ss_pred             CCEEEEcccCChHHHHHHH--HHHHhhCCCCeEEEecCCCCCH--HHHhcccCC-CCcEEEecCC-CCC-CCCCeeEEec
Q 004972          385 VDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDL--NIVGEKTSS-QDRIIGAHFF-SPA-HVMPLLEIVR  457 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~--~~l~~~~~~~~ii~s~ts~~~i--~~l~~~~~~-~~r~ig~h~~-~p~-~~~~lvEiv~  457 (721)
                      +|+||+|+|.+..+...++  +++.+.++++++|++.+++.+.  ..+.+.+.. ...++....+ +|+ .....+.++.
T Consensus        62 ~D~vi~~v~~~~~~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~  141 (299)
T 1vpd_A           62 CDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMV  141 (299)
T ss_dssp             CSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHhCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEecCCCCHhHHhcCCEEEEe
Confidence            9999999996555444333  5677888999988876655442  355554432 2233332111 000 0111234444


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCeeEEEcC-CCchh---hhhhhh----HHHHHHHHHHHc-CCCHHHHHHHH
Q 004972          458 TERTSAQVILDLMTVGKIIKKVPVVVGN-CTGFA---VNRAFF----PYSQSARLLVSL-GVDVFRIDSAI  519 (721)
Q Consensus       458 ~~~t~~e~~~~~~~l~~~lG~~~v~v~d-~~gfi---~nRl~~----~~~~Ea~~l~~~-Gv~~~~ID~a~  519 (721)
                      +.  +++.++.+.++++.+|..++++++ ..|..   +|+.+.    ..++|++.+.+. |+++++++.++
T Consensus       142 ~~--~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~  210 (299)
T 1vpd_A          142 GG--DKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAI  210 (299)
T ss_dssp             ES--CHHHHHHHHHHHHTTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             CC--CHHHHHHHHHHHHHHcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            43  789999999999999999988864 33432   244333    467899988776 99999999887

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=99.46  E-value=5.7e-13  Score=142.75  Aligned_cols=173  Identities=12%  Similarity=0.035  Sum_probs=117.5

Q ss_pred             CCCCceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-
Q 004972          301 KPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  379 (721)
Q Consensus       301 ~~~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-  379 (721)
                      |.+.++||+|||+|.||+++|..|+++|++|++||++++.++...+...+  ..+...-.        ...++.+++++ 
T Consensus        25 m~~~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~--~~~l~g~~--------l~~~i~~t~d~~   94 (356)
T 3k96_A           25 MEPFKHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVN--NRYLPNYP--------FPETLKAYCDLK   94 (356)
T ss_dssp             --CCCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSB--TTTBTTCC--------CCTTEEEESCHH
T ss_pred             ccccCCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCC--cccCCCCc--------cCCCeEEECCHH
Confidence            33445789999999999999999999999999999999987765432100  00000000        12357777787 


Q ss_pred             cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH------HHhcccCCCCcEE-EecCCCCC---CC
Q 004972          380 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN------IVGEKTSSQDRII-GAHFFSPA---HV  449 (721)
Q Consensus       380 ~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~------~l~~~~~~~~r~i-g~h~~~p~---~~  449 (721)
                      +++++||+||+|||  ....+++++++.++++++++|++.++++...      .+.+.++. ..+. -.-|....   ..
T Consensus        95 ea~~~aDvVilaVp--~~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~~l~~-~~~~vlsgP~~a~ev~~g  171 (356)
T 3k96_A           95 ASLEGVTDILIVVP--SFAFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATELGQ-VPMAVISGPSLATEVAAN  171 (356)
T ss_dssp             HHHTTCCEEEECCC--HHHHHHHHHHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHHHHCS-CCEEEEESSCCHHHHHTT
T ss_pred             HHHhcCCEEEECCC--HHHHHHHHHHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHHHcCC-CCEEEEECccHHHHHHcC
Confidence            57899999999999  7788999999999999999999988877764      23333331 1211 11111110   11


Q ss_pred             CCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCc
Q 004972          450 MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG  488 (721)
Q Consensus       450 ~~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~g  488 (721)
                      .+..-++.+  .+++..+.+.+++...+.++.+..|..|
T Consensus       172 ~pt~~via~--~~~~~~~~v~~lf~~~~~rv~~~~Di~g  208 (356)
T 3k96_A          172 LPTAVSLAS--NNSQFSKDLIERLHGQRFRVYKNDDMIG  208 (356)
T ss_dssp             CCEEEEEEE--SCHHHHHHHHHHHCCSSEEEEEESCHHH
T ss_pred             CCeEEEEec--CCHHHHHHHHHHhCCCCeeEEEeCCHHH
Confidence            122222222  4789999999999999998888877554

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=99.45  E-value=4.1e-13  Score=149.93  Aligned_cols=201  Identities=14%  Similarity=0.162  Sum_probs=136.0

Q ss_pred             CCceeEEEEcCCCCcHHHHHHHHHC--CCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCC--HHHHHHh-----hcCc
Q 004972          303 RGVRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT--QDKANNA-----LKML  373 (721)
Q Consensus       303 ~~~~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~-----~~~i  373 (721)
                      ++++||+|||+|.||.++|..|+++  |++|++||+++++++...+            +...  ....+..     ..++
T Consensus         7 ~~~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~------------g~~~i~e~gl~~~~~~~~~~~l   74 (481)
T 2o3j_A            7 GKVSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNS------------DKLPIYEPGLDEIVFAARGRNL   74 (481)
T ss_dssp             CCCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTS------------SSCSSCCTTHHHHHHHHBTTTE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHC------------CCCCcCCCCHHHHHHHhhcCCE
Confidence            3467999999999999999999998  7999999999999876531            1110  0000111     1357


Q ss_pred             eeccCc-cccCCCCEEEEcccCCh-------------HHHHHHHHHHHhhCCCCeEEEecCCCCCHH---HHhcccCC--
Q 004972          374 KGVLDY-SEFKDVDMVIEAVIESV-------------PLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSS--  434 (721)
Q Consensus       374 ~~~~~~-~~l~~aDlVIeavpe~~-------------~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~---~l~~~~~~--  434 (721)
                      .+++++ +.+++||+||+|||...             ....++++++.++++++++|+. .|++++.   .+...+..  
T Consensus        75 ~~t~~~~~~~~~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~-~STv~~gt~~~l~~~l~~~~  153 (481)
T 2o3j_A           75 FFSSDIPKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVE-KSTVPVKAAESIGCILREAQ  153 (481)
T ss_dssp             EEESCHHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEE-CSCCCTTHHHHHHHHHHHHT
T ss_pred             EEECCHHHHhhcCCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEE-CCCCCCCHHHHHHHHHHHhh
Confidence            778886 66899999999998654             2577888999999999998875 3344432   23222211  


Q ss_pred             C----C-cEEEecCCCCCCCCCee---------EEe-cCCCC--CHHHHHHHHHHHHHcCC-eeEEEcC-----CCchhh
Q 004972          435 Q----D-RIIGAHFFSPAHVMPLL---------EIV-RTERT--SAQVILDLMTVGKIIKK-VPVVVGN-----CTGFAV  491 (721)
Q Consensus       435 ~----~-r~ig~h~~~p~~~~~lv---------Eiv-~~~~t--~~e~~~~~~~l~~~lG~-~~v~v~d-----~~gfi~  491 (721)
                      .    . -.+..+   |....+..         .++ .+...  ++++++.+.++++.+++ .++++.+     ...++.
T Consensus       154 ~~~~~~d~~v~~~---Pe~~~~G~a~~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~d~~~ae~~Kl~~  230 (481)
T 2o3j_A          154 KNNENLKFQVLSN---PEFLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVA  230 (481)
T ss_dssp             C----CCEEEEEC---CCCCCTTCHHHHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEEEEEHHHHHHHHHHH
T ss_pred             CcCcCCceEEEeC---cccccccchhhcccCCCEEEEEecCchhhHHHHHHHHHHHHhhcCCCeEEecCHHHHHHHHHHH
Confidence            1    1 123333   33332221         244 33321  23688999999999996 7777754     334666


Q ss_pred             hhh---hhHHHHHHHHHHHc-CCCHHHHHHHH
Q 004972          492 NRA---FFPYSQSARLLVSL-GVDVFRIDSAI  519 (721)
Q Consensus       492 nRl---~~~~~~Ea~~l~~~-Gv~~~~ID~a~  519 (721)
                      |-+   ..+++||+..+++. |++++++..++
T Consensus       231 N~~~a~~ia~~nE~~~la~~~Gid~~~v~~~~  262 (481)
T 2o3j_A          231 NAFLAQRISSINSISAVCEATGAEISEVAHAV  262 (481)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            763   46788999999988 99999999998

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=99.45  E-value=1.4e-13  Score=152.99  Aligned_cols=108  Identities=15%  Similarity=0.206  Sum_probs=98.3

Q ss_pred             CCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCC--CHHHHHHHH-HhcCCCc---cHHHHHH
Q 004972          460 RTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV--DVFRIDSAI-RSFGLPI---GPFQLLD  533 (721)
Q Consensus       460 ~t~~e~~~~~~~l~~~lG~~~v~v~d~~gfi~nRl~~~~~~Ea~~l~~~Gv--~~~~ID~a~-~~~G~p~---Gpf~~~D  533 (721)
                      .+++++.+.+..+.+.+|+.++.+  .+|+|+||++.+++|||++++++|+  +++|||.++ .++|||+   |||+++|
T Consensus       331 ~~~~~~~~~~~~~~~~~g~~~~~~--~~g~i~~Rll~~~~nEa~~~l~eGIa~~~~dID~a~~~G~G~p~~~gGP~~~~D  408 (463)
T 1zcj_A          331 KPDPWLSTFLSQYREVHHIEQRTI--SKEEILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAA  408 (463)
T ss_dssp             EECHHHHHHHHHHHHHTTCCCCCC--CHHHHHHHHHHHHHHHHHHHHHTTSBSCHHHHHHHHHHHSCCCGGGCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCcccC--CHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhCCCCCCCCcChHHHHH
Confidence            468999999988888888766543  3799999999999999999999998  599999999 9999998   9999999


Q ss_pred             hhchHHHHHHHHHHHHhCCC--CCCCcHHHHHHHHcCC
Q 004972          534 LAGYGVAAATSKEFDKAFPD--RSFQSPLVDLLLKSGR  569 (721)
Q Consensus       534 ~~Gld~~~~~~~~l~~~~~~--~~~~~~~l~~~v~~G~  569 (721)
                      .+|+|.++++++.+++.+++  ++.|+++|++|+++|+
T Consensus       409 ~~Gl~~~~~~~~~l~~~~g~~~~~~p~~lL~~~v~~G~  446 (463)
T 1zcj_A          409 SVGLPTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQGS  446 (463)
T ss_dssp             HHCHHHHHHHHHHHHHHCTTCGGGSCCHHHHHHHHTTC
T ss_pred             HhCHHHHHHHHHHHHHHhCCCccCCCCHHHHHHHHcCC
Confidence            99999999999999999998  5569999999999986

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=99.44  E-value=5.4e-13  Score=137.19  Aligned_cols=147  Identities=12%  Similarity=0.070  Sum_probs=111.8

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCC----CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNN----IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  379 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G----~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-  379 (721)
                      .+||+|||+|.||+++|..|+++|    ++|++||++++.                 .|             +..+++. 
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~-----------------~g-------------~~~~~~~~   53 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN-----------------TT-------------LNYMSSNE   53 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS-----------------SS-------------SEECSCHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc-----------------Cc-------------eEEeCCHH
Confidence            358999999999999999999999    799999998764                 01             2334444 


Q ss_pred             cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeE-EecC
Q 004972          380 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVRT  458 (721)
Q Consensus       380 ~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvE-iv~~  458 (721)
                      +.+++||+||+|+|  .....+++.++.+.+ +++++++.++++....+.+.+....+++...+..|......+. ++++
T Consensus        54 ~~~~~~D~vi~~v~--~~~~~~v~~~l~~~l-~~~~vv~~~~gi~~~~l~~~~~~~~~~v~~~p~~p~~~~~g~~~~~~~  130 (262)
T 2rcy_A           54 ELARHCDIIVCAVK--PDIAGSVLNNIKPYL-SSKLLISICGGLNIGKLEEMVGSENKIVWVMPNTPCLVGEGSFIYCSN  130 (262)
T ss_dssp             HHHHHCSEEEECSC--TTTHHHHHHHSGGGC-TTCEEEECCSSCCHHHHHHHHCTTSEEEEEECCGGGGGTCEEEEEEEC
T ss_pred             HHHhcCCEEEEEeC--HHHHHHHHHHHHHhc-CCCEEEEECCCCCHHHHHHHhCCCCcEEEECCChHHHHcCCeEEEEeC
Confidence            55788999999999  456778888888888 5667778899999887777765433444333444444444444 4567


Q ss_pred             CCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004972          459 ERTSAQVILDLMTVGKIIKKVPVVVGN  485 (721)
Q Consensus       459 ~~t~~e~~~~~~~l~~~lG~~~v~v~d  485 (721)
                      +.++++.++.+.++++.+|+ ++++++
T Consensus       131 ~~~~~~~~~~~~~ll~~~G~-~~~~~~  156 (262)
T 2rcy_A          131 KNVNSTDKKYVNDIFNSCGI-IHEIKE  156 (262)
T ss_dssp             TTCCHHHHHHHHHHHHTSEE-EEECCG
T ss_pred             CCCCHHHHHHHHHHHHhCCC-EEEeCH
Confidence            77899999999999999997 888764

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=99.44  E-value=1.2e-13  Score=144.77  Aligned_cols=182  Identities=17%  Similarity=0.148  Sum_probs=126.8

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  383 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  383 (721)
                      ++||+|||+|.||..+|..|++.|++|++|| ++++++...+           .|             +..+++. +.++
T Consensus         3 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~   57 (295)
T 1yb4_A            3 AMKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLS-----------LG-------------AVNVETARQVTE   57 (295)
T ss_dssp             -CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHT-----------TT-------------CBCCSSHHHHHH
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHH-----------cC-------------CcccCCHHHHHh
Confidence            4689999999999999999999999999999 8877655321           12             2233444 4578


Q ss_pred             CCCEEEEcccCChHHHHHHHH---HHHhhCCCCeEEEecCCCCC--HHHHhcccCCCCcEEEecCCCCCCC--------C
Q 004972          384 DVDMVIEAVIESVPLKQKIFS---ELEKACPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAHV--------M  450 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~~---~l~~~~~~~~ii~s~ts~~~--i~~l~~~~~~~~r~ig~h~~~p~~~--------~  450 (721)
                      ++|+||+|+|.+..++ .++.   ++.+.++++++|++.+++.+  ..++.+.+...    +.||++.|..        .
T Consensus        58 ~~D~vi~~vp~~~~~~-~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~----g~~~~~~p~~~~~~~a~~g  132 (295)
T 1yb4_A           58 FADIIFIMVPDTPQVE-DVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNEM----GADYLDAPVSGGEIGAREG  132 (295)
T ss_dssp             TCSEEEECCSSHHHHH-HHHHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHHHHHTT----TEEEEECCEESHHHHHHHT
T ss_pred             cCCEEEEECCCHHHHH-HHHhCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc----CCeEEEccCCCCHHHHHcC
Confidence            9999999999555443 4444   67777888998887666533  33555544321    3444433321        2


Q ss_pred             CeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC-CCc----hhhhhh---hhHHHHHHHHHHHc-CCCHHHHHHHH
Q 004972          451 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTG----FAVNRA---FFPYSQSARLLVSL-GVDVFRIDSAI  519 (721)
Q Consensus       451 ~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d-~~g----fi~nRl---~~~~~~Ea~~l~~~-Gv~~~~ID~a~  519 (721)
                      .+..++.+   +++.++.+.++++.+|..++++++ ..+    ++.|.+   +...++|++.+++. |++++++..++
T Consensus       133 ~~~~~~~~---~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~  207 (295)
T 1yb4_A          133 TLSIMVGG---EQKVFDRVKPLFDILGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGADPVRVRQAL  207 (295)
T ss_dssp             CEEEEEES---CHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             CeEEEECC---CHHHHHHHHHHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            33444444   789999999999999999988865 233    334443   23467899998877 99999999888

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=99.44  E-value=1.6e-13  Score=137.43  Aligned_cols=155  Identities=18%  Similarity=0.231  Sum_probs=114.6

Q ss_pred             CCceeEEEEcCCCCcHHHHHHHHHCCCceEE-EeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccc
Q 004972          303 RGVRKVAVIGGGLMGSGIATAHILNNIYVVL-KEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  381 (721)
Q Consensus       303 ~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l-~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  381 (721)
                      |.|+||+|||+|.||.++|..|+++|++|++ ||+++++++...+..          +            ....+++.+.
T Consensus        21 m~mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~----------g------------~~~~~~~~~~   78 (220)
T 4huj_A           21 QSMTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRF----------G------------ASVKAVELKD   78 (220)
T ss_dssp             GGSCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHH----------T------------TTEEECCHHH
T ss_pred             hcCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHh----------C------------CCcccChHHH
Confidence            4568999999999999999999999999999 999999877643211          1            1112344466


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCC--------------CHHHHhcccCCCCcEEEecCCCCC
Q 004972          382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--------------DLNIVGEKTSSQDRIIGAHFFSPA  447 (721)
Q Consensus       382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--------------~i~~l~~~~~~~~r~ig~h~~~p~  447 (721)
                      ++++|+||+|+|  .....+++.++.+ + ++++|++.++++              ....+++.++ ..+++..+++.|.
T Consensus        79 ~~~aDvVilavp--~~~~~~v~~~l~~-~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~-~~~vv~~~~~~~~  153 (220)
T 4huj_A           79 ALQADVVILAVP--YDSIADIVTQVSD-W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVP-GAKVVKAFNTLPA  153 (220)
T ss_dssp             HTTSSEEEEESC--GGGHHHHHTTCSC-C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHST-TCEEEEESCSSCH
T ss_pred             HhcCCEEEEeCC--hHHHHHHHHHhhc-c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCC-CCCEEECCCCCCH
Confidence            889999999998  7778888888766 4 477888888777              3456666664 4577777655444


Q ss_pred             CCCC---------eeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCC
Q 004972          448 HVMP---------LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNC  486 (721)
Q Consensus       448 ~~~~---------lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~  486 (721)
                      ....         ...++.+  .++++.+.+.++++.+|+.++.+++.
T Consensus       154 ~v~~~g~~~~~~~~~v~~~g--~~~~~~~~v~~l~~~~G~~~~~~G~l  199 (220)
T 4huj_A          154 AVLAADPDKGTGSRVLFLSG--NHSDANRQVAELISSLGFAPVDLGTL  199 (220)
T ss_dssp             HHHTSCSBCSSCEEEEEEEE--SCHHHHHHHHHHHHHTTCEEEECCSH
T ss_pred             HHhhhCcccCCCCeeEEEeC--CCHHHHHHHHHHHHHhCCCeEeeCCh
Confidence            3221         2223334  46999999999999999999998763

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=99.41  E-value=3.1e-13  Score=149.55  Aligned_cols=192  Identities=13%  Similarity=0.038  Sum_probs=130.9

Q ss_pred             CceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcc-c-
Q 004972          304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-E-  381 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~-  381 (721)
                      .+++|+|||+|.||.+||..|+++|++|++||+++++++...+           .+..        -..+..+++++ . 
T Consensus         3 ~~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~g~~--------g~~i~~~~s~~e~v   63 (484)
T 4gwg_A            3 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLA-----------NEAK--------GTKVVGAQSLKEMV   63 (484)
T ss_dssp             CCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHH-----------TTTT--------TSSCEECSSHHHHH
T ss_pred             CCCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-----------cccC--------CCceeccCCHHHHH
Confidence            4578999999999999999999999999999999998776532           1100        01344445552 2 


Q ss_pred             --cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH--HHhcccC-CCCcEEEecCCCCC---CCCCee
Q 004972          382 --FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLL  453 (721)
Q Consensus       382 --l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~--~l~~~~~-~~~r~ig~h~~~p~---~~~~lv  453 (721)
                        ++++|+||+|||.+.. ...++.++.+.++++.+|++.+++.+..  .+.+.+. ...+|++......+   ..++  
T Consensus        64 ~~l~~aDvVil~Vp~~~~-v~~vl~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsGg~~gA~~G~--  140 (484)
T 4gwg_A           64 SKLKKPRRIILLVKAGQA-VDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGP--  140 (484)
T ss_dssp             HTBCSSCEEEECSCSSHH-HHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC--
T ss_pred             hhccCCCEEEEecCChHH-HHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccCCHHHHhcCC--
Confidence              3469999999996544 4567789999999999998877666533  3333332 23345554221111   1122  


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHcCCee-------EEEcCC-Cc----hhhhhhh---hHHHHHHHHHHHc--CCCHHHHH
Q 004972          454 EIVRTERTSAQVILDLMTVGKIIKKVP-------VVVGNC-TG----FAVNRAF---FPYSQSARLLVSL--GVDVFRID  516 (721)
Q Consensus       454 Eiv~~~~t~~e~~~~~~~l~~~lG~~~-------v~v~d~-~g----fi~nRl~---~~~~~Ea~~l~~~--Gv~~~~ID  516 (721)
                      -++++.  ++++++.++++++.+|..+       +++++. .|    .+-|-+.   ...++|++.+++.  |++++++-
T Consensus       141 ~im~GG--~~ea~~~v~pll~~ig~~v~~~~~~~~~~G~~Gag~~vKmv~N~i~~~~m~~iaEa~~l~~~~~Gld~~~l~  218 (484)
T 4gwg_A          141 SLMPGG--NKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMA  218 (484)
T ss_dssp             EEEEEE--CGGGHHHHHHHHHHHSCBCTTSCBSBCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred             eeecCC--CHHHHHHHHHHHHHhcCcccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence            244442  6899999999999999887       777652 12    2334443   3346799999986  89999998


Q ss_pred             HHH
Q 004972          517 SAI  519 (721)
Q Consensus       517 ~a~  519 (721)
                      .++
T Consensus       219 ~v~  221 (484)
T 4gwg_A          219 QAF  221 (484)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            887

>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1

Probab=99.41  E-value=6.1e-13  Score=132.09  Aligned_cols=137  Identities=16%  Similarity=0.186  Sum_probs=108.7

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEEC
Q 004972           27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE  106 (721)
Q Consensus        27 al~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav~  106 (721)
                      .++.++.+++.+.|..++.+++++.|+|.-    .|.|+++..                ...++ +.|..+++||+++++
T Consensus        53 ~I~~~~a~~i~~~L~~l~~~~~~k~I~l~I----nSPGG~v~a----------------g~~I~-~~i~~~~~pV~t~v~  111 (218)
T 1y7o_A           53 PVEDNMANSVIAQLLFLDAQDSTKDIYLYV----NTPGGSVSA----------------GLAIV-DTMNFIKADVQTIVM  111 (218)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCTTSCEEEEE----EECCBCHHH----------------HHHHH-HHHHHSSSCEEEEEE
T ss_pred             EECHHHHHHHHHHHHHHHhcCCCCCEEEEE----ECcCCCHHH----------------HHHHH-HHHHhcCCCEEEEEc
Confidence            488999999999999999887778887763    244444321                12344 567889999999999


Q ss_pred             CcccccchHhhhhcCE--EEeeCCceEeCcccccCccc--c-c------------------cccccccCH--HHHHHHHH
Q 004972          107 GLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIP--G-T------------------QRLPRLVGL--SKAIEMML  161 (721)
Q Consensus       107 G~a~GgG~~lalacD~--ria~~~a~~~~pe~~~Gl~P--~-~------------------~~l~r~~G~--~~a~~l~l  161 (721)
                      |.|.++|+.|+++||.  |+|.++++|++++.. |.+|  | .                  ..+++..|.  .++.+++.
T Consensus       112 G~AaS~G~~Ia~a~d~g~r~a~p~a~igih~p~-~g~~~~G~~~di~~~~~~i~~~~~~~~~~~a~~~G~~~~~i~~~~~  190 (218)
T 1y7o_A          112 GMAASMGTVIASSGAKGKRFMLPNAEYMIHQPM-GGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVHADAE  190 (218)
T ss_dssp             EEEETHHHHHHTTSCTTCEEECTTCEEECCCCC---------------CHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred             cEeHHHHHHHHHcCCcCcEEEcCCcEEEEeccc-ccccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHh
Confidence            9999999999999999  999999999999987 4342  2 1                  346666666  48889999


Q ss_pred             cCCCcCHHHHHHcCCccEEcCCch
Q 004972          162 LSKSITSEEGWKLGLIDAVVTSEE  185 (721)
Q Consensus       162 tg~~~~a~eA~~~Glv~~vv~~~~  185 (721)
                      +|+.++|+||+++||||+|+++++
T Consensus       191 ~~~~~ta~EA~e~GLVD~v~~~~~  214 (218)
T 1y7o_A          191 RDNWMSAQETLEYGFIDEIMANNS  214 (218)
T ss_dssp             SCCCBCHHHHHHHTSCSEECCCC-
T ss_pred             CCCEEcHHHHHHCCCCcEEcCcCC
Confidence            999999999999999999998765

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=99.40  E-value=6.7e-14  Score=145.71  Aligned_cols=89  Identities=17%  Similarity=0.194  Sum_probs=79.5

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCCCCCCCH
Q 004972          616 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPSR  695 (721)
Q Consensus       616 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~  695 (721)
                      .++++.||++.++++||++++++|++ ++++||.++..|+|+|+   |||+++|.+|+|+.+.++++  ....+++.|++
T Consensus       188 ~~g~i~nr~~~~~~~ea~~l~~~g~~-~~~~id~~~~~~~g~~~---Gp~~~~D~~Gld~~~~~~~~--~~~~~~~~~~~  261 (283)
T 4e12_A          188 KAGYVLNSLLVPLLDAAAELLVDGIA-DPETIDKTWRIGTGAPK---GPFEIFDIVGLTTAYNISSV--SGPKQREFAAY  261 (283)
T ss_dssp             CTTTTHHHHHHHHHHHHHHHHHTTSC-CHHHHHHHHHHHHCCSS---CHHHHHHHHCHHHHHHHHHT--SCHHHHHHHHH
T ss_pred             CCCEEehHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhccCCCc---CHHHHHHhccHHHHHHHHhc--cccCcccCchH
Confidence            46789999999999999999999999 99999999999999999   99999999999999999883  11112567889


Q ss_pred             HHHHHH-------HcCCCCcCC
Q 004972          696 FLEERA-------TKGIPLSAP  710 (721)
Q Consensus       696 ~l~~~~-------~~g~~f~~~  710 (721)
                      ++++|+       |+|+|||+|
T Consensus       262 ~~~~~v~~g~lG~k~g~Gfy~y  283 (283)
T 4e12_A          262 LKENYIDKGKLGLATGEGFYRY  283 (283)
T ss_dssp             HHHHTGGGTCCBGGGTBSSSBC
T ss_pred             HHHHHHHCCCCceeCCeEeecC
Confidence            999999       789999998

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=99.39  E-value=7e-13  Score=148.07  Aligned_cols=190  Identities=13%  Similarity=0.075  Sum_probs=132.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      .+|+|||+|.||++||..|+++|++|++||+++++++...+.       .. .+           ..+..++++ +.+++
T Consensus        11 ~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~-------~~-~~-----------~gi~~~~s~~e~v~~   71 (497)
T 2p4q_A           11 ADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLAN-------EA-KG-----------KSIIGATSIEDFISK   71 (497)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHT-------TT-TT-----------SSEECCSSHHHHHHT
T ss_pred             CCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcc-------cc-cC-----------CCeEEeCCHHHHHhc
Confidence            479999999999999999999999999999999987765320       00 00           135555665 33444


Q ss_pred             ---CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH--HHHhcccC-CCCcEEEecCCCCCC---CCCeeEE
Q 004972          385 ---VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS-SQDRIIGAHFFSPAH---VMPLLEI  455 (721)
Q Consensus       385 ---aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i--~~l~~~~~-~~~r~ig~h~~~p~~---~~~lvEi  455 (721)
                         ||+||+|||.+.. .+++++++.+.++++++|++.+++.+.  ..+.+.+. ...+|+++....++.   .++  .+
T Consensus        72 l~~aDvVil~Vp~~~~-v~~vl~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v~~pVsgg~~~a~~G~--~i  148 (497)
T 2p4q_A           72 LKRPRKVMLLVKAGAP-VDALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVGSGVSGGEEGARYGP--SL  148 (497)
T ss_dssp             SCSSCEEEECCCSSHH-HHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC--EE
T ss_pred             CCCCCEEEEEcCChHH-HHHHHHHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCceeCCCcccChhHhhcCC--eE
Confidence               9999999995544 456678899999999999876666553  23444432 223455543222111   112  24


Q ss_pred             ecCCCCCHHHHHHHHHHHHHcCCe------eEEEcC-CCc----hhhhhhh---hHHHHHHHHHHHc--CCCHHHHHHHH
Q 004972          456 VRTERTSAQVILDLMTVGKIIKKV------PVVVGN-CTG----FAVNRAF---FPYSQSARLLVSL--GVDVFRIDSAI  519 (721)
Q Consensus       456 v~~~~t~~e~~~~~~~l~~~lG~~------~v~v~d-~~g----fi~nRl~---~~~~~Ea~~l~~~--Gv~~~~ID~a~  519 (721)
                      +.+.  ++++++.++++++.+|+.      ++++++ ..|    ++.|.+.   ...++|++.+++.  |++++++..++
T Consensus       149 m~gg--~~e~~~~v~~ll~~~g~~~dGe~~v~~vg~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~~~  226 (497)
T 2p4q_A          149 MPGG--SEEAWPHIKNIFQSISAKSDGEPCCEWVGPAGAGHYVKMVHNGIEYGDMQLICEAYDIMKRLGGFTDKEISDVF  226 (497)
T ss_dssp             EEEE--CGGGHHHHHHHHHHHSCEETTEESCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred             EecC--CHHHHHHHHHHHHHhcCccCCCCceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHH
Confidence            4442  688999999999999988      667753 333    3456664   4557899998886  89999999887

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=99.39  E-value=1.4e-12  Score=145.19  Aligned_cols=192  Identities=14%  Similarity=0.056  Sum_probs=132.7

Q ss_pred             CCceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cc
Q 004972          303 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  381 (721)
Q Consensus       303 ~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  381 (721)
                      +.-++|+|||+|.||++||..|+++|++|++||+++++++...+..        . +           ..+..++++ +.
T Consensus        13 ~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~--------~-~-----------~gi~~~~s~~e~   72 (480)
T 2zyd_A           13 MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAEN--------P-G-----------KKLVPYYTVKEF   72 (480)
T ss_dssp             --CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHS--------T-T-----------SCEEECSSHHHH
T ss_pred             cCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhC--------C-C-----------CCeEEeCCHHHH
Confidence            4456899999999999999999999999999999999877653210        0 0           135556666 44


Q ss_pred             cCC---CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH--HHHhcccC-CCCcEEEecCCCCC---CCCCe
Q 004972          382 FKD---VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS-SQDRIIGAHFFSPA---HVMPL  452 (721)
Q Consensus       382 l~~---aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i--~~l~~~~~-~~~r~ig~h~~~p~---~~~~l  452 (721)
                      +++   ||+||.|||.+.. .++++.++.+.++++++|++.+++.+.  ..+.+.+. ...+++++.....+   ..++ 
T Consensus        73 v~~l~~aDvVil~Vp~~~~-v~~vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~-  150 (480)
T 2zyd_A           73 VESLETPRRILLMVKAGAG-TDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGP-  150 (480)
T ss_dssp             HHTBCSSCEEEECSCSSSH-HHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-
T ss_pred             HhCCCCCCEEEEECCCHHH-HHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCeeCCccccCHhHHhcCC-
Confidence            454   9999999995433 456778899999999999887776644  33444442 23355554221111   1222 


Q ss_pred             eEEecCCCCCHHHHHHHHHHHHHcCCe-------eEEEcCC-Cc----hhhhhhh---hHHHHHHHHHHHc--CCCHHHH
Q 004972          453 LEIVRTERTSAQVILDLMTVGKIIKKV-------PVVVGNC-TG----FAVNRAF---FPYSQSARLLVSL--GVDVFRI  515 (721)
Q Consensus       453 vEiv~~~~t~~e~~~~~~~l~~~lG~~-------~v~v~d~-~g----fi~nRl~---~~~~~Ea~~l~~~--Gv~~~~I  515 (721)
                       .++.+.  +++.++.+.++++.+|..       ++++++. .|    ++.|.+.   ...+.|++.+++.  |++++++
T Consensus       151 -~i~~gg--~~~~~~~v~~ll~~~g~~~~dGe~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~  227 (480)
T 2zyd_A          151 -SIMPGG--QKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEEL  227 (480)
T ss_dssp             -EEEEES--CHHHHHHHHHHHHHHSCBCTTSCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred             -eEEecC--CHHHHHHHHHHHHHHhccccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence             245443  689999999999999987       5666652 22    3446553   3456799998876  9999999


Q ss_pred             HHHH
Q 004972          516 DSAI  519 (721)
Q Consensus       516 D~a~  519 (721)
                      ..++
T Consensus       228 ~~l~  231 (480)
T 2zyd_A          228 AQTF  231 (480)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8877

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=99.37  E-value=1.6e-12  Score=136.24  Aligned_cols=139  Identities=17%  Similarity=0.115  Sum_probs=106.7

Q ss_pred             ceeEEEEc-CCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972          305 VRKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  383 (721)
Q Consensus       305 ~~kI~VIG-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  383 (721)
                      ++||+||| +|.||+++|..|++.|++|++||++++.                                    +..+.++
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~------------------------------------~~~~~~~   64 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA------------------------------------VAESILA   64 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG------------------------------------GHHHHHT
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCccc------------------------------------CHHHHhc
Confidence            56899999 9999999999999999999999998652                                    0113467


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCC--HHHHhcccCCCCcEEEecCCCCCC----CCCeeEEec
Q 004972          384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAH----VMPLLEIVR  457 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--i~~l~~~~~~~~r~ig~h~~~p~~----~~~lvEiv~  457 (721)
                      +||+||+|||  .....+++.++.++++++++|++.+|...  +..+....  +.++++.||..++.    .+..+-+++
T Consensus        65 ~aDvVilavp--~~~~~~vl~~l~~~l~~~~iv~~~~svk~~~~~~~~~~~--~~~~v~~hP~~g~~~~~~~g~~~~l~~  140 (298)
T 2pv7_A           65 NADVVIVSVP--INLTLETIERLKPYLTENMLLADLTSVKREPLAKMLEVH--TGAVLGLHPMFGADIASMAKQVVVRCD  140 (298)
T ss_dssp             TCSEEEECSC--GGGHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHC--SSEEEEEEECSCTTCSCCTTCEEEEEE
T ss_pred             CCCEEEEeCC--HHHHHHHHHHHHhhcCCCcEEEECCCCCcHHHHHHHHhc--CCCEEeeCCCCCCCchhhcCCeEEEec
Confidence            8999999999  56688999999999999998876554322  33344333  46899999965442    233455555


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004972          458 TERTSAQVILDLMTVGKIIKKVPVVVGN  485 (721)
Q Consensus       458 ~~~t~~e~~~~~~~l~~~lG~~~v~v~d  485 (721)
                      +.  +++.++.+.++++.+|..++++.+
T Consensus       141 ~~--~~~~~~~v~~l~~~~G~~~~~~~~  166 (298)
T 2pv7_A          141 GR--FPERYEWLLEQIQIWGAKIYQTNA  166 (298)
T ss_dssp             EE--CGGGTHHHHHHHHHTTCEEEECCH
T ss_pred             CC--CHHHHHHHHHHHHHcCCEEEECCH
Confidence            54  788899999999999999988864

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=99.37  E-value=3.1e-12  Score=142.57  Aligned_cols=191  Identities=13%  Similarity=0.032  Sum_probs=132.1

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  383 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  383 (721)
                      .+||+|||+|.||.++|..|+++|++|++||+++++++...+...         +           ..+..++++ +.++
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~---------~-----------~gi~~~~s~~e~v~   64 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQ---------D-----------KNLVFTKTLEEFVG   64 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTT---------T-----------SCEEECSSHHHHHH
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCc---------C-----------CCeEEeCCHHHHHh
Confidence            468999999999999999999999999999999998776532110         0           124555565 3344


Q ss_pred             ---CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH--HHHhcccCC-CCcEEEecCCCCC---CCCCeeE
Q 004972          384 ---DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTSS-QDRIIGAHFFSPA---HVMPLLE  454 (721)
Q Consensus       384 ---~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i--~~l~~~~~~-~~r~ig~h~~~p~---~~~~lvE  454 (721)
                         ++|+||+|||.+.. ...++.++.+.++++++|++.+++.+.  ..+.+.+.. ..++++.....++   ..++  .
T Consensus        65 ~l~~aDvVilavp~~~~-v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~--~  141 (474)
T 2iz1_A           65 SLEKPRRIMLMVQAGAA-TDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGVSGGEKGALLGP--S  141 (474)
T ss_dssp             TBCSSCEEEECCCTTHH-HHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEEEEECSHHHHHHHCC--C
T ss_pred             hccCCCEEEEEccCchH-HHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEECCCCCCChhhhccCC--e
Confidence               49999999995544 446678899999999988876666543  345555432 2345544322111   1122  1


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCCe--------eEEEcC-CCc----hhhhhhh---hHHHHHHHHHHHc--CCCHHHHH
Q 004972          455 IVRTERTSAQVILDLMTVGKIIKKV--------PVVVGN-CTG----FAVNRAF---FPYSQSARLLVSL--GVDVFRID  516 (721)
Q Consensus       455 iv~~~~t~~e~~~~~~~l~~~lG~~--------~v~v~d-~~g----fi~nRl~---~~~~~Ea~~l~~~--Gv~~~~ID  516 (721)
                      ++++.  +++.++.+.++++.+|..        +.++++ ..|    ++.|.+.   ...+.|++.+++.  |++++++.
T Consensus       142 i~~gg--~~~~~~~v~~ll~~~g~~~~~dge~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~~Gl~~~~~~  219 (474)
T 2iz1_A          142 MMPGG--QKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQ  219 (474)
T ss_dssp             EEEEE--CHHHHHHHHHHHHHHSCBCTTTCCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred             EEecC--CHHHHHHHHHHHHHHhcccccCCCceEEEECCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence            34443  789999999999999987        456654 222    4556663   3457799998876  89999999


Q ss_pred             HHHH
Q 004972          517 SAIR  520 (721)
Q Consensus       517 ~a~~  520 (721)
                      .++.
T Consensus       220 ~l~~  223 (474)
T 2iz1_A          220 AIFE  223 (474)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8873

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=99.36  E-value=1.6e-12  Score=138.60  Aligned_cols=182  Identities=16%  Similarity=0.086  Sum_probs=124.1

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHH-HHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  382 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  382 (721)
                      .+||+|||+|.||+++|..|...|++|+++|++++. .+.+.           +.|             +..+ +. +.+
T Consensus        16 ~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~-----------~~G-------------~~~~-~~~e~~   70 (338)
T 1np3_A           16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAE-----------AHG-------------LKVA-DVKTAV   70 (338)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHH-----------HTT-------------CEEE-CHHHHH
T ss_pred             CCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHH-----------HCC-------------CEEc-cHHHHH
Confidence            358999999999999999999999999999998765 33221           112             2233 44 567


Q ss_pred             CCCCEEEEcccCChHHHHHHHH-HHHhhCCCCeEEEecCCCCCHHHHhccc-CCCCcEEEecCCCCCCC---------CC
Q 004972          383 KDVDMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNTSTIDLNIVGEKT-SSQDRIIGAHFFSPAHV---------MP  451 (721)
Q Consensus       383 ~~aDlVIeavpe~~~~k~~v~~-~l~~~~~~~~ii~s~ts~~~i~~l~~~~-~~~~r~ig~h~~~p~~~---------~~  451 (721)
                      ++||+||+|||  ......++. ++.+.++++++|++. +++.+ .+.... .....+++.||..|.+.         +.
T Consensus        71 ~~aDvVilavp--~~~~~~v~~~~i~~~l~~~~ivi~~-~gv~~-~~~~~~~~~~~~vv~~~P~gp~~a~~~l~~~G~g~  146 (338)
T 1np3_A           71 AAADVVMILTP--DEFQGRLYKEEIEPNLKKGATLAFA-HGFSI-HYNQVVPRADLDVIMIAPKAPGHTVRSEFVKGGGI  146 (338)
T ss_dssp             HTCSEEEECSC--HHHHHHHHHHHTGGGCCTTCEEEES-CCHHH-HTTSSCCCTTCEEEEEEESSCSHHHHHHHHTTCCC
T ss_pred             hcCCEEEEeCC--cHHHHHHHHHHHHhhCCCCCEEEEc-CCchh-HHHhhcCCCCcEEEeccCCCCchhHHHHHhccCCC
Confidence            89999999999  555678888 898999999988875 44444 333322 12235999999777641         22


Q ss_pred             eeEEecCCCCCHHHHHHHHHHHHHcCC-e--eEEEc----C-CCchhhhhhhhH----HHHHHH-HHHHcCCCHHHH
Q 004972          452 LLEIVRTERTSAQVILDLMTVGKIIKK-V--PVVVG----N-CTGFAVNRAFFP----YSQSAR-LLVSLGVDVFRI  515 (721)
Q Consensus       452 lvEiv~~~~t~~e~~~~~~~l~~~lG~-~--~v~v~----d-~~gfi~nRl~~~----~~~Ea~-~l~~~Gv~~~~I  515 (721)
                      .+-++++..++++..+.+..+++.+|. .  ++.+.    + ...++.+..+..    ++..++ .+++.|+++++.
T Consensus       147 ~~ii~~~~~~~~~a~~~~~~l~~~lG~~~agv~~~~~~~~~~~~~~~s~~~l~G~lp~~ia~~~e~l~~~Gl~~~~a  223 (338)
T 1np3_A          147 PDLIAIYQDASGNAKNVALSYACGVGGGRTGIIETTFKDETETDLFGEQAVLCGGCVELVKAGFETLVEAGYAPEMA  223 (338)
T ss_dssp             CEEEEEEECSSSCHHHHHHHHHHHTTHHHHCEEECCHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             eEEEEecCCCCHHHHHHHHHHHHHcCCCccceEeechhcccchHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHH
Confidence            333567767788999999999999998 4  55552    2 234444434322    233333 335668887654

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=99.36  E-value=2.7e-12  Score=133.82  Aligned_cols=184  Identities=15%  Similarity=0.057  Sum_probs=124.3

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  384 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  384 (721)
                      |+||+|||+|.||..+|..|++ |++|++||+++++++...+.           |             +..++..+.+++
T Consensus         1 M~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~-----------g-------------~~~~~~~~~~~~   55 (289)
T 2cvz_A            1 MEKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEE-----------F-------------GSEAVPLERVAE   55 (289)
T ss_dssp             -CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHH-----------H-------------CCEECCGGGGGG
T ss_pred             CCeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHC-----------C-------------CcccCHHHHHhC
Confidence            3589999999999999999999 99999999999887664321           1             111222255789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCC--HHHHhcccCC-CCcEEEecCCCC-CC---CCCeeEEec
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSS-QDRIIGAHFFSP-AH---VMPLLEIVR  457 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--i~~l~~~~~~-~~r~ig~h~~~p-~~---~~~lvEiv~  457 (721)
                      +|+||+|+|.+..+ ..+++++.+.++++++|++.++..+  ...+.+.+.. ...++.. +..+ +.   ...+..++.
T Consensus        56 ~D~vi~~v~~~~~~-~~v~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~-p~~~~~~~~~~g~~~~~~~  133 (289)
T 2cvz_A           56 ARVIFTCLPTTREV-YEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDA-PVSGGTSGAEAGTLTVMLG  133 (289)
T ss_dssp             CSEEEECCSSHHHH-HHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEEC-CEESHHHHHHHTCEEEEEE
T ss_pred             CCEEEEeCCChHHH-HHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEe-cCCCChhHHhhCCeEEEEC
Confidence            99999999954443 4567888888888998885443322  3355554433 2234443 2211 10   112222333


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCeeEEEcCCC-c----hhhhhh---hhHHHHHHHHHHHc-CCCHHHHHHHH
Q 004972          458 TERTSAQVILDLMTVGKIIKKVPVVVGNCT-G----FAVNRA---FFPYSQSARLLVSL-GVDVFRIDSAI  519 (721)
Q Consensus       458 ~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~-g----fi~nRl---~~~~~~Ea~~l~~~-Gv~~~~ID~a~  519 (721)
                         .+++.++.+.+++ .+|..++++++.. +    ++.|.+   +...++|++.+.+. |++++++..++
T Consensus       134 ---~~~~~~~~~~~ll-~~g~~~~~~~~~~~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~  200 (289)
T 2cvz_A          134 ---GPEEAVERVRPFL-AYAKKVVHVGPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVI  200 (289)
T ss_dssp             ---SCHHHHHHHGGGC-TTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             ---CCHHHHHHHHHHH-hhcCCeEEcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHHHHH
Confidence               3789999999999 9999888887632 2    233553   34567899988876 99999998887

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=99.35  E-value=8.6e-12  Score=135.71  Aligned_cols=204  Identities=17%  Similarity=0.147  Sum_probs=133.7

Q ss_pred             CceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHH--------HHHHHHhhhhcCCCCHHHHHHhhcCcee
Q 004972          304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT--------IEANVRGLVTRGKLTQDKANNALKMLKG  375 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~i~~  375 (721)
                      +|.+|+|||+|.+|.++|..|++.|++|+++|+++++++...+.        +...+.+.++            .+++++
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~------------~g~l~~   87 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALS------------SGRLSF   87 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHH------------TTCEEE
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHH------------cCCeeE
Confidence            57899999999999999999999999999999999998876431        1111111122            246888


Q ss_pred             ccCc-cccCCCCEEEEcccC--------ChHHHHHHHHHHHhhCC---CCeEEEecCCCCCHHH---Hh-----cccCCC
Q 004972          376 VLDY-SEFKDVDMVIEAVIE--------SVPLKQKIFSELEKACP---PHCILATNTSTIDLNI---VG-----EKTSSQ  435 (721)
Q Consensus       376 ~~~~-~~l~~aDlVIeavpe--------~~~~k~~v~~~l~~~~~---~~~ii~s~ts~~~i~~---l~-----~~~~~~  435 (721)
                      +++. +++++||++|.|||.        |+.......+.+.++++   ++.+|+. .||.++..   +.     +.....
T Consensus        88 tt~~~~ai~~ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~-eSTVppGtte~~~~~~l~~~~~~~  166 (444)
T 3vtf_A           88 AESAEEAVAATDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVV-KSTVPPGTTEGLVARAVAEEAGGV  166 (444)
T ss_dssp             CSSHHHHHHTSSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEE-CSCCCTTTTTTHHHHHHHTTTTTC
T ss_pred             EcCHHHHHhcCCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEE-eCCCCCchHHHHHHHHHHHhCCCC
Confidence            9888 568999999999984        45567777778877764   3455543 33443321   11     111111


Q ss_pred             CcEEEecCCCCCCCCCee---------EEecCCCCCHHHHHHHHHHHHHcCCeeEEEc----CCCchhhhhh---hhHHH
Q 004972          436 DRIIGAHFFSPAHVMPLL---------EIVRTERTSAQVILDLMTVGKIIKKVPVVVG----NCTGFAVNRA---FFPYS  499 (721)
Q Consensus       436 ~r~ig~h~~~p~~~~~lv---------Eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~----d~~gfi~nRl---~~~~~  499 (721)
                      .-.++   ++|....+.-         -++.| .+++++.+.+..+++.+....+++.    |...++.|-.   -.+++
T Consensus       167 ~f~v~---~~PErl~eG~a~~d~~~~~riViG-~~~~~a~~~~~~ly~~~~~~~~~~~~~~AE~~Kl~eN~~ravnIa~~  242 (444)
T 3vtf_A          167 KFSVA---SNPEFLREGSALEDFFKPDRIVIG-AGDERAASFLLDVYKAVDAPKLVMKPREAELVKYASNVFLALKISFA  242 (444)
T ss_dssp             CCEEE---ECCCCCCTTSHHHHHHSCSCEEEE-ESSHHHHHHHHHHTTTSCSCEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Cceee---cCcccccCCccccccccCCcEEEc-CCCHHHHHHHHHHHhccCCCEEEechhHHHHHHHHHHHHHHHHHHHH
Confidence            11222   2333332221         12322 2468888999999998877665543    2223444544   35789


Q ss_pred             HHHHHHHHc-CCCHHHHHHHH-H--hcCC
Q 004972          500 QSARLLVSL-GVDVFRIDSAI-R--SFGL  524 (721)
Q Consensus       500 ~Ea~~l~~~-Gv~~~~ID~a~-~--~~G~  524 (721)
                      ||...+++. |+|+.+|-.++ .  .+|+
T Consensus       243 NEla~ice~~GiDv~eV~~a~~~d~rig~  271 (444)
T 3vtf_A          243 NEVGLLAKRLGVDTYRVFEAVGLDKRIGR  271 (444)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHTSTTSCS
T ss_pred             HHHHHHHHHcCCCHHHHHHHhccCCCCCC
Confidence            999999988 99999998888 3  5554

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=99.34  E-value=7.3e-12  Score=128.89  Aligned_cols=174  Identities=14%  Similarity=0.087  Sum_probs=115.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeC--CHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEV--NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  382 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  382 (721)
                      +||+|||+|.||.++|..|+++|++|++||+  +++.++...+           .|             +.  ++. +.+
T Consensus         1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~-----------~g-------------~~--~~~~~~~   54 (264)
T 1i36_A            1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERART-----------VG-------------VT--ETSEEDV   54 (264)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHH-----------HT-------------CE--ECCHHHH
T ss_pred             CeEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHH-----------CC-------------Cc--CCHHHHH
Confidence            3799999999999999999999999999999  6666554321           11             22  333 556


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH---HHHhcccCCCCcEEEecCCCCCC---CCCeeEEe
Q 004972          383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL---NIVGEKTSSQDRIIGAHFFSPAH---VMPLLEIV  456 (721)
Q Consensus       383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i---~~l~~~~~~~~r~ig~h~~~p~~---~~~lvEiv  456 (721)
                      ++||+||+|||.+.....  +.++.+.+++  +|++. |+..+   ..+.+.+.... ++..+.+.++.   .+.. .++
T Consensus        55 ~~aDvvi~~v~~~~~~~~--~~~~~~~~~~--~vi~~-s~~~~~~~~~l~~~~~~~g-~~~~~v~~~~~~~~~g~~-~~~  127 (264)
T 1i36_A           55 YSCPVVISAVTPGVALGA--ARRAGRHVRG--IYVDI-NNISPETVRMASSLIEKGG-FVDAAIMGSVRRKGADIR-IIA  127 (264)
T ss_dssp             HTSSEEEECSCGGGHHHH--HHHHHTTCCS--EEEEC-SCCCHHHHHHHHHHCSSSE-EEEEEECSCHHHHGGGCE-EEE
T ss_pred             hcCCEEEEECCCHHHHHH--HHHHHHhcCc--EEEEc-cCCCHHHHHHHHHHHhhCC-eeeeeeeCCccccccCCe-EEe
Confidence            899999999996544332  3567777766  55543 44433   35666665443 76766665443   2223 344


Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCch-----hhhhhh----hHHHHHHHHHHHc-CCCHHHHHHHH
Q 004972          457 RTERTSAQVILDLMTVGKIIKKVPVVVGNCTGF-----AVNRAF----FPYSQSARLLVSL-GVDVFRIDSAI  519 (721)
Q Consensus       457 ~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~gf-----i~nRl~----~~~~~Ea~~l~~~-Gv~~~~ID~a~  519 (721)
                      .++.  .   +.+.+ ++.+|+.++++++.+|.     +++..+    ...++|++.+.+. |++++.+ ..+
T Consensus       128 ~g~~--~---~~~~~-l~~~g~~~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~la~~~G~~~~~~-~~~  193 (264)
T 1i36_A          128 SGRD--A---EEFMK-LNRYGLNIEVRGREPGDASAIKMLRSSYTKGVSALLWETLTAAHRLGLEEDVL-EML  193 (264)
T ss_dssp             ESTT--H---HHHHG-GGGGTCEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH-HHH
T ss_pred             cCCc--H---HHhhh-HHHcCCeeEECCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH-HHH
Confidence            4432  2   67788 99999999998865553     334432    4457799888766 9987644 444

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=99.33  E-value=6e-12  Score=124.98  Aligned_cols=157  Identities=15%  Similarity=0.160  Sum_probs=114.8

Q ss_pred             eeEEEEc-CCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972          306 RKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  383 (721)
Q Consensus       306 ~kI~VIG-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  383 (721)
                      +||+||| +|.||..++..|++.|++|+++|++++..+...+.+..    .+..            ..+.. +++ +.++
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~----~~~~------------~~~~~-~~~~~~~~   63 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRR----IAGD------------ASITG-MKNEDAAE   63 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHH----HHSS------------CCEEE-EEHHHHHH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc----cccc------------CCCCh-hhHHHHHh
Confidence            3799999 99999999999999999999999999887665432211    1110            12332 333 5578


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCC--------------HHHHhcccCCCCcEEEecCCCCCC-
Q 004972          384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--------------LNIVGEKTSSQDRIIGAHFFSPAH-  448 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--------------i~~l~~~~~~~~r~ig~h~~~p~~-  448 (721)
                      ++|+||.|+|  .....+++.++.+.++ ++++++.++++.              ..++++.+. ..+++..|+..|.. 
T Consensus        64 ~~D~Vi~~~~--~~~~~~~~~~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~-~~~~v~~~~~~~~~~  139 (212)
T 1jay_A           64 ACDIAVLTIP--WEHAIDTARDLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLE-SEKVVSALHTIPAAR  139 (212)
T ss_dssp             HCSEEEECSC--HHHHHHHHHHTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHT-CSCEEECCTTCCHHH
T ss_pred             cCCEEEEeCC--hhhHHHHHHHHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCC-CCeEEEEccchHHHH
Confidence            8999999999  5556688888877774 888888888766              567776665 36788776543321 


Q ss_pred             ------CCCeeEEecCCCCCHHHHHHHHHHHHHc-CCeeEEEcC
Q 004972          449 ------VMPLLEIVRTERTSAQVILDLMTVGKII-KKVPVVVGN  485 (721)
Q Consensus       449 ------~~~lvEiv~~~~t~~e~~~~~~~l~~~l-G~~~v~v~d  485 (721)
                            ...+..+++++  +++.++.+.++++.+ |+.++++++
T Consensus       140 ~~~~~~~~~~~~~~~g~--~~~~~~~v~~l~~~~~G~~~~~~~~  181 (212)
T 1jay_A          140 FANLDEKFDWDVPVCGD--DDESKKVVMSLISEIDGLRPLDAGP  181 (212)
T ss_dssp             HHCTTCCCCEEEEEEES--CHHHHHHHHHHHHHSTTEEEEEEES
T ss_pred             hhCcCCCCCccEEEECC--cHHHHHHHHHHHHHcCCCCceeccc
Confidence                  22345566665  689999999999999 999999976

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=99.31  E-value=2.5e-12  Score=140.85  Aligned_cols=86  Identities=15%  Similarity=0.122  Sum_probs=77.0

Q ss_pred             ChHHHHHHHHHHHHHHHHHHh-hcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCCCCCCC
Q 004972          616 TEKEIVEMILFPVVNESCRVL-EEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPS  694 (721)
Q Consensus       616 ~~~~i~~r~~~~~~~ea~~~l-~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~  694 (721)
                      .+++++||++.++++||+.++ ++| + ++++||.++. ++|||+   |||+++|.+|+|+.+.+++.+      .+.|+
T Consensus       232 ~pGfi~Nril~~~~~EA~~l~~~~G-a-~~e~ID~a~~-~~G~pm---GPf~l~D~vGlD~~~~i~~~~------~~~~~  299 (460)
T 3k6j_A          232 CKSFVFNRLLHVYFDQSQKLMYEYG-Y-LPHQIDKIIT-NFGFLM---GPMTVADMNGFDVMEKLKKEN------GLEPN  299 (460)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTSC-C-CHHHHHHHHH-HHTBSS---CHHHHHHHHCTHHHHHHHHHS------CCCCC
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHcC-C-CHHHHHHHHH-HcCCCc---CHHHHHHHhchHHHHHHHHHh------ccCch
Confidence            579999999999999999999 777 5 8999999998 999999   999999999999999988765      24567


Q ss_pred             HHHHHHH-------HcCCCCcCCCCC
Q 004972          695 RFLEERA-------TKGIPLSAPVSS  713 (721)
Q Consensus       695 ~~l~~~~-------~~g~~f~~~~~~  713 (721)
                      ++|++|+       |+|+|||+|++.
T Consensus       300 ~~l~~~v~~G~lG~KtG~GFY~y~~~  325 (460)
T 3k6j_A          300 PIEKEMWRLKRYGRKTNKGFYKYDDK  325 (460)
T ss_dssp             HHHHHHHHTTCCBGGGTBSSSEECTT
T ss_pred             HHHHHHHHCCCCeeecCCEEEECCCC
Confidence            9999999       789999999653

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=99.29  E-value=1.1e-11  Score=138.09  Aligned_cols=194  Identities=12%  Similarity=0.062  Sum_probs=131.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC-
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK-  383 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~-  383 (721)
                      +||+|||+|.||+.+|..|+++|++|++||+++++++...+..          |... .     ...+..++++ +.++ 
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~----------g~~~-~-----~~~i~~~~~~~e~v~~   65 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKAN----------ASAP-F-----AGNLKAFETMEAFAAS   65 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHT----------TTST-T-----GGGEEECSCHHHHHHH
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc----------CCCC-C-----CCCeEEECCHHHHHhc
Confidence            3799999999999999999999999999999999877653210          1000 0     0135556666 3333 


Q ss_pred             --CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH--HHHhcccCC-CCcEEEecCCCCC---CCCCeeEE
Q 004972          384 --DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTSS-QDRIIGAHFFSPA---HVMPLLEI  455 (721)
Q Consensus       384 --~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i--~~l~~~~~~-~~r~ig~h~~~p~---~~~~lvEi  455 (721)
                        ++|+||+|||.... ...+++++.+.++++++|++.+++.+.  ..+.+.+.. ...+++.....++   ..++  .+
T Consensus        66 l~~aDvVilaVp~~~~-v~~vl~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~--~i  142 (478)
T 1pgj_A           66 LKKPRKALILVQAGAA-TDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGP--AF  142 (478)
T ss_dssp             BCSSCEEEECCCCSHH-HHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCC--EE
T ss_pred             ccCCCEEEEecCChHH-HHHHHHHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEeeccCCHHHHhcCC--eE
Confidence              59999999995544 456678899999999988876666543  344444432 3345554322211   1122  23


Q ss_pred             ecCCCCCHHHHHHHHHHHHHcCCe-------eEEEcCC-Cc----hhhhhhh---hHHHHHHHHHHHc-CCCHHHHHHHH
Q 004972          456 VRTERTSAQVILDLMTVGKIIKKV-------PVVVGNC-TG----FAVNRAF---FPYSQSARLLVSL-GVDVFRIDSAI  519 (721)
Q Consensus       456 v~~~~t~~e~~~~~~~l~~~lG~~-------~v~v~d~-~g----fi~nRl~---~~~~~Ea~~l~~~-Gv~~~~ID~a~  519 (721)
                      +.+.  +++..+.+.++++.+|..       ++++++. .|    ++.|.+.   ...++|++.+++. |++++++..++
T Consensus       143 ~~gg--~~~~~~~v~~ll~~~g~~~~dg~~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~G~~~~~~~~l~  220 (478)
T 1pgj_A          143 FPGG--TLSVWEEIRPIVEAAAAKADDGRPCVTMNGSGGAGSCVKMYHNSGEYAILQIWGEVFDILRAMGLNNDEVAAVL  220 (478)
T ss_dssp             EEEE--CHHHHHHHHHHHHHHSCBCTTSCBSCCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             eccC--CHHHHHHHHHHHHHhcccccCCCeeEEEeCCchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            4432  689999999999999987       5666542 22    2346553   3457899988877 89999998887


Q ss_pred             H
Q 004972          520 R  520 (721)
Q Consensus       520 ~  520 (721)
                      .
T Consensus       221 ~  221 (478)
T 1pgj_A          221 E  221 (478)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=99.29  E-value=1.6e-11  Score=124.83  Aligned_cols=167  Identities=13%  Similarity=0.080  Sum_probs=103.7

Q ss_pred             CceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHH-HHHH-HHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccc
Q 004972          304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY-LLKG-IKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  381 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~-~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  381 (721)
                      ..+||+|||+|.||.+||..|+++|++|++||++++. +... ....          +.....+.....+.+..++..+.
T Consensus        18 ~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~e~   87 (245)
T 3dtt_A           18 QGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAM----------GAPPFSQWLPEHPHVHLAAFADV   87 (245)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-----------------CCHHHHGGGSTTCEEEEHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhh----------cchhhhHHHhhcCceeccCHHHH
Confidence            4579999999999999999999999999999999986 1110 0000          00000000111122333333466


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHH-HhhCCCCeEEEecCCCC----------------CH-HHHhcccCCCCcEEE-ec
Q 004972          382 FKDVDMVIEAVIESVPLKQKIFSEL-EKACPPHCILATNTSTI----------------DL-NIVGEKTSSQDRIIG-AH  442 (721)
Q Consensus       382 l~~aDlVIeavpe~~~~k~~v~~~l-~~~~~~~~ii~s~ts~~----------------~i-~~l~~~~~~~~r~ig-~h  442 (721)
                      +++||+||+|||  .....+++.++ .+.+ ++++|++.+.++                .+ ..+++.++ ..+++. ++
T Consensus        88 ~~~aDvVilavp--~~~~~~~~~~i~~~~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~~l~-~~~vv~~~~  163 (245)
T 3dtt_A           88 AAGAELVVNATE--GASSIAALTAAGAENL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRTFP-EAKVVKTLN  163 (245)
T ss_dssp             HHHCSEEEECSC--GGGHHHHHHHHCHHHH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHHHST-TSEEEECST
T ss_pred             HhcCCEEEEccC--cHHHHHHHHHhhhhhc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHHHCC-CCeEEEeec
Confidence            789999999999  44445677777 6666 677887766322                23 34444443 345554 44


Q ss_pred             CCCCC--------CCCCeeEEecCCCCCHHHHHHHHHHHHHcCCe-eEEEcCC
Q 004972          443 FFSPA--------HVMPLLEIVRTERTSAQVILDLMTVGKIIKKV-PVVVGNC  486 (721)
Q Consensus       443 ~~~p~--------~~~~lvEiv~~~~t~~e~~~~~~~l~~~lG~~-~v~v~d~  486 (721)
                      +...+        ...++.-++.+.  ++++.+.+.++++.+|.. ++++++.
T Consensus       164 ~~~a~v~~~~~~a~~g~~~~~v~g~--d~~~~~~v~~ll~~~g~~~~~~~G~~  214 (245)
T 3dtt_A          164 TMNASLMVDPGRAAGGDHSVFVSGN--DAAAKAEVATLLKSLGHQDVIDLGDI  214 (245)
T ss_dssp             TSCHHHHHCGGGTGGGCCCEEEECS--CHHHHHHHHHHHHHTTCCCEEEEESG
T ss_pred             ccCHHHhcCccccCCCCeeEEEECC--CHHHHHHHHHHHHHcCCCceeccCcH
Confidence            43211        122333344443  799999999999999976 4778763

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=99.27  E-value=1e-11  Score=138.62  Aligned_cols=191  Identities=13%  Similarity=0.071  Sum_probs=129.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccc-c--
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE-F--  382 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-l--  382 (721)
                      +||+|||+|.||+.+|..|+++|++|++||+++++++...+.      .  ..|           ..+..+++++. +  
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~------~--~~g-----------~gi~~~~~~~e~v~~   63 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLAN------E--AKG-----------TKVLGAHSLEEMVSK   63 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHT------T--TTT-----------SSCEECSSHHHHHHH
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhc------c--ccC-----------CCeEEeCCHHHHHhh
Confidence            479999999999999999999999999999999987765320      0  001           12455666633 3  


Q ss_pred             -CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH--HHhcccC-CCCcEEEecCCCCCC---CCCeeEE
Q 004972          383 -KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPAH---VMPLLEI  455 (721)
Q Consensus       383 -~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~--~l~~~~~-~~~r~ig~h~~~p~~---~~~lvEi  455 (721)
                       +++|+||+|||.... ...++.++.+.++++++|++.+++.+..  .+.+.+. ....++++....++.   .++  .+
T Consensus        64 l~~aDvVilaVp~~~~-v~~vl~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~pv~g~~~~a~~g~--~i  140 (482)
T 2pgd_A           64 LKKPRRIILLVKAGQA-VDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGP--SL  140 (482)
T ss_dssp             BCSSCEEEECSCTTHH-HHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC--EE
T ss_pred             ccCCCEEEEeCCChHH-HHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCCCCCCChhhhccCC--eE
Confidence             589999999995444 4567788999999989888776665532  3444332 233455543222111   112  23


Q ss_pred             ecCCCCCHHHHHHHHHHHHHcCCee-------EEEcC-CCc----hhhhhhh---hHHHHHHHHHHHc--CCCHHHHHHH
Q 004972          456 VRTERTSAQVILDLMTVGKIIKKVP-------VVVGN-CTG----FAVNRAF---FPYSQSARLLVSL--GVDVFRIDSA  518 (721)
Q Consensus       456 v~~~~t~~e~~~~~~~l~~~lG~~~-------v~v~d-~~g----fi~nRl~---~~~~~Ea~~l~~~--Gv~~~~ID~a  518 (721)
                      +++.  +++..+.+.++++.+|..+       +++++ ..|    ++.|.+.   ...++|++.+++.  |++++++..+
T Consensus       141 ~~gg--~~e~~~~v~~ll~~~g~~v~d~~~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~~G~~~~~~~~~  218 (482)
T 2pgd_A          141 MPGG--NKEAWPHIKAIFQGIAAKVGTGEPCCDWVGDDGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKA  218 (482)
T ss_dssp             EEEE--CTTTHHHHHHHHHHHSCBCTTSCBSCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHH
T ss_pred             EeCC--CHHHHHHHHHHHHHhhhhccCCCcceEEECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHH
Confidence            4432  5778899999999999876       45543 222    4556654   3457899988865  8999999988


Q ss_pred             HH
Q 004972          519 IR  520 (721)
Q Consensus       519 ~~  520 (721)
                      +.
T Consensus       219 ~~  220 (482)
T 2pgd_A          219 FE  220 (482)
T ss_dssp             HH
T ss_pred             HH
Confidence            73

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=99.27  E-value=3.9e-12  Score=137.45  Aligned_cols=170  Identities=12%  Similarity=0.020  Sum_probs=106.9

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  383 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  383 (721)
                      |+||+|||+|.||+++|..|+++|++|++||++++.++...+..       .....+. .  ......+..+++. +.++
T Consensus        15 M~kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~-------~~~~~~~-~--~~~~~~~~~~~~~~~~~~   84 (366)
T 1evy_A           15 LNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKR-------ENVLFLK-G--VQLASNITFTSDVEKAYN   84 (366)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHT-------BCTTTST-T--CBCCTTEEEESCHHHHHT
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcC-------ccccccc-c--cccccceeeeCCHHHHHc
Confidence            55999999999999999999999999999999998877653210       0000000 0  0001235556666 4578


Q ss_pred             CCCEEEEcccCChHHHHHHHHH----HHhhCCC-CeEEEecCCCCCHHH---HhcccCC--CC-c-EEEecCCCCCC--C
Q 004972          384 DVDMVIEAVIESVPLKQKIFSE----LEKACPP-HCILATNTSTIDLNI---VGEKTSS--QD-R-IIGAHFFSPAH--V  449 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~~~----l~~~~~~-~~ii~s~ts~~~i~~---l~~~~~~--~~-r-~ig~h~~~p~~--~  449 (721)
                      +||+||+|||  .....+++.+    +.+.+++ +++|++.++++.+..   +.+.+..  +. . .+...+..+..  .
T Consensus        85 ~aDvVilav~--~~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~~~~~~~~~v~~gp~~~~~~~~  162 (366)
T 1evy_A           85 GAEIILFVIP--TQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEVAT  162 (366)
T ss_dssp             TCSSEEECCC--HHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCHHHHHT
T ss_pred             CCCEEEECCC--hHHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHHHCCCCcEEEEeCCChHHHHHh
Confidence            9999999999  5777888888    8888888 888888776665531   1111110  11 1 11111211110  0


Q ss_pred             CCeeEEecCCCCCHHHHHHHHHHHHHc--CCeeEEEcCCC
Q 004972          450 MPLLEIVRTERTSAQVILDLMTVGKII--KKVPVVVGNCT  487 (721)
Q Consensus       450 ~~lvEiv~~~~t~~e~~~~~~~l~~~l--G~~~v~v~d~~  487 (721)
                      .....++.+ ..+++..+.+.++++..  |..+.+..|..
T Consensus       163 g~~~~~~~~-~~~~~~~~~v~~ll~~~g~g~~~~~~~di~  201 (366)
T 1evy_A          163 GVFTCVSIA-SADINVARRLQRIMSTGDRSFVCWATTDTV  201 (366)
T ss_dssp             TCCEEEEEE-CSSHHHHHHHHHHHSCTTSSEEEEEESCHH
T ss_pred             CCceEEEEe-cCCHHHHHHHHHHhcCCCCeEEEEEcCCch
Confidence            111112222 23678899999999999  77777666643

>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=99.26  E-value=3.7e-11  Score=125.87  Aligned_cols=135  Identities=16%  Similarity=0.113  Sum_probs=98.4

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEE
Q 004972           26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (721)
Q Consensus        26 Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav  105 (721)
                      ++++++..+...++++.+++..- -+|.|.-.++++. |.+..+.      .    ........+ ..+.++++|+||+|
T Consensus       139 G~~~~~~~~Ka~r~~~~A~~~~~-PlI~lvdt~Ga~~-g~~ae~~------g----~~~~~a~~l-~al~~~~vPvIavV  205 (327)
T 2f9i_A          139 GMAHPEGYRKALRLMKQAEKFNR-PIFTFIDTKGAYP-GKAAEER------G----QSESIATNL-IEMASLKVPVIAIV  205 (327)
T ss_dssp             GCCCHHHHHHHHHHHHHHHHTTC-CEEEEEEESCSCC-CHHHHHT------T----HHHHHHHHH-HHHHTCSSCEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHhhcCC-CEEEEEeCCCCCc-chhhhhh------h----hHHHHHHHH-HHHHhCCCCEEEEE
Confidence            68999999999999998886643 4455543222222 2211110      0    112333455 56889999999999


Q ss_pred             CCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcC
Q 004972          106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT  182 (721)
Q Consensus       106 ~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~  182 (721)
                      +|.|.|||+.++++||++||.++++|++      +.|.   +..+.+..+...+.++    ..++|++|+++|+||+|+|
T Consensus       206 ~G~a~GGGa~~~~~~D~via~~~A~~~v------~~peg~a~il~~~~~~a~~A~e~----~~itA~~a~~~GlVd~VV~  275 (327)
T 2f9i_A          206 IGEGGSGGALGIGIANKVLMLENSTYSV------ISPEGAAALLWKDSNLAKIAAET----MKITAHDIKQLGIIDDVIS  275 (327)
T ss_dssp             EEEEBHHHHHTTCCCSEEEEETTCBCBS------SCHHHHHHHHSSCGGGHHHHHHH----HTCBHHHHHHTTSSSEEEC
T ss_pred             ECCcChHHHHHHHCCCEEEEcCCceEee------cCchHHHHHHHHHhcchHHHHHH----cCCCHHHHHHcCCceEEec
Confidence            9999999999999999999999999986      2343   4444455555777776    7799999999999999998


Q ss_pred             C
Q 004972          183 S  183 (721)
Q Consensus       183 ~  183 (721)
                      .
T Consensus       276 e  276 (327)
T 2f9i_A          276 E  276 (327)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=99.26  E-value=7.8e-12  Score=132.47  Aligned_cols=122  Identities=17%  Similarity=0.236  Sum_probs=90.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  384 (721)
                      +||+|||+|.||.++|..++..|+ +|++||++++.++.....+.+......            ...+++.+++++++++
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~------------~~~~i~~t~d~~al~~   82 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIG------------SPAKIFGENNYEYLQN   82 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHT------------CCCCEEEESCGGGGTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccC------------CCCEEEECCCHHHHCC
Confidence            589999999999999999999999 999999999988864433333322110            1246888888888999


Q ss_pred             CCEEEEcc--cC------------ChHHHHHHHHHHHhhCCCCeEE--EecCCCCCHHHHhcccC--CCCcEEEe
Q 004972          385 VDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCIL--ATNTSTIDLNIVGEKTS--SQDRIIGA  441 (721)
Q Consensus       385 aDlVIeav--pe------------~~~~k~~v~~~l~~~~~~~~ii--~s~ts~~~i~~l~~~~~--~~~r~ig~  441 (721)
                      ||+||+++  |+            +..+++++++++.+++ +++++  +||++... +.++....  +|+|++|+
T Consensus        83 aD~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~~~~-t~~~~~~~~~~~~rviG~  155 (328)
T 2hjr_A           83 SDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC-PNAFVICITNPLDAM-VYYFKEKSGIPANKVCGM  155 (328)
T ss_dssp             CSEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHH-HHHHHHHHCCCGGGEEES
T ss_pred             CCEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEecCchHHH-HHHHHHhcCCChhhEEEe
Confidence            99999998  54            4577999999999998 55655  46655432 34443333  56777774

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=99.25  E-value=1.7e-11  Score=121.52  Aligned_cols=135  Identities=13%  Similarity=0.084  Sum_probs=102.1

Q ss_pred             CceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972          304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  383 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  383 (721)
                      ..+||+|||+|.||+++|..|++.|++|++||++++                                         .++
T Consensus        18 ~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~-----------------------------------------~~~   56 (209)
T 2raf_A           18 QGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ-----------------------------------------ATT   56 (209)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC-----------------------------------------CSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH-----------------------------------------Hhc
Confidence            356899999999999999999999999999998754                                         357


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCC---------------HHHHhcccCCCCcEEE-ecCCCCC
Q 004972          384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID---------------LNIVGEKTSSQDRIIG-AHFFSPA  447 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~---------------i~~l~~~~~~~~r~ig-~h~~~p~  447 (721)
                      +||+||+|+|  ....+++++++.+.++ ++++++.+++++               ...+++.++ ..+++. .|+...|
T Consensus        57 ~aD~vi~av~--~~~~~~v~~~l~~~~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~-~~~vv~~~~~~~~p  132 (209)
T 2raf_A           57 LGEIVIMAVP--YPALAALAKQYATQLK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLP-DSQVLKAFNTTFAA  132 (209)
T ss_dssp             CCSEEEECSC--HHHHHHHHHHTHHHHT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHHHCT-TSEEEECSTTSCHH
T ss_pred             cCCEEEEcCC--cHHHHHHHHHHHHhcC-CCEEEEECCCCCccccccccCCCCCcHHHHHHHHCC-CCcEEEeeecccHh
Confidence            8999999999  6667788898888888 888888777665               344555443 457777 6664322


Q ss_pred             CC--------CCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004972          448 HV--------MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN  485 (721)
Q Consensus       448 ~~--------~~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d  485 (721)
                      ..        .+..-++.+  .+++..+.+.++++.+|..++.+++
T Consensus       133 ~~~~~~~~g~~~~~~~~~g--~~~~~~~~v~~ll~~~G~~~~~~~~  176 (209)
T 2raf_A          133 TLQSGQVNGKEPTTVLVAG--NDDSAKQRFTRALADSPLEVKDAGK  176 (209)
T ss_dssp             HHHHSEETTTEECEEEEEE--SCHHHHHHHHHHTTTSSCEEEEEES
T ss_pred             hccccccCCCCCceeEEcC--CCHHHHHHHHHHHHHcCCceEeCCC
Confidence            11        112222333  3689999999999999999999887

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=99.24  E-value=8.6e-11  Score=128.21  Aligned_cols=197  Identities=17%  Similarity=0.169  Sum_probs=124.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHh----hcCceeccCc-c
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNA----LKMLKGVLDY-S  380 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~i~~~~~~-~  380 (721)
                      +||+|||+|.||.++|..|++ |++|++||+++++++...+.          ...+.....+..    ..++.+++++ +
T Consensus         1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~----------~~~i~e~~l~~~~~~~~~~l~~t~~~~~   69 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNG----------LSPIQDEYIEYYLKSKQLSIKATLDSKA   69 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTT----------CCSSCCHHHHHHHHHSCCCEEEESCHHH
T ss_pred             CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcC----------CCCcCCCCHHHHHHhccCcEEEeCCHHH
Confidence            389999999999999999999 99999999999987764321          001111111111    1246777776 5


Q ss_pred             ccCCCCEEEEcccCCh---------HHHHHHHHHHHhhCCCCeEEEe-cCCCCCH-HHHhcccCCCCcEEEecCCCCCCC
Q 004972          381 EFKDVDMVIEAVIESV---------PLKQKIFSELEKACPPHCILAT-NTSTIDL-NIVGEKTSSQDRIIGAHFFSPAHV  449 (721)
Q Consensus       381 ~l~~aDlVIeavpe~~---------~~k~~v~~~l~~~~~~~~ii~s-~ts~~~i-~~l~~~~~~~~r~ig~h~~~p~~~  449 (721)
                      .+++||+||.|||...         ....++++++.+ ++++++|+. +|.+... ..+.+.+...  .+...   |...
T Consensus        70 ~~~~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~--~v~~~---Pe~~  143 (402)
T 1dlj_A           70 AYKEAELVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTD--RIIFS---PEFL  143 (402)
T ss_dssp             HHHHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCS--CEEEC---CCCC
T ss_pred             HhcCCCEEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCC--eEEEC---Cccc
Confidence            6789999999999753         257788888888 888888775 4444333 3444444322  22222   2222


Q ss_pred             CCe------e---EEecCCCCC-----HHHHHHHHHHHHHcC-C-e-eEEEcCCC-----chhhhhh---hhHHHHHHHH
Q 004972          450 MPL------L---EIVRTERTS-----AQVILDLMTVGKIIK-K-V-PVVVGNCT-----GFAVNRA---FFPYSQSARL  504 (721)
Q Consensus       450 ~~l------v---Eiv~~~~t~-----~e~~~~~~~l~~~lG-~-~-~v~v~d~~-----gfi~nRl---~~~~~~Ea~~  504 (721)
                      .+.      .   .++.|....     .+..+.+.+++..-+ . . ++++++..     .++.|-+   ..+++||+..
T Consensus       144 ~~G~a~~~~~~~~riviG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~  223 (402)
T 1dlj_A          144 RESKALYDNLYPSRIIVSCEENDSPKVKADAEKFALLLKSAAKKNNVPVLIMGASEAEAVKLFANTYLALRVAYFNELDT  223 (402)
T ss_dssp             CTTSTTHHHHSCSCEEEECCTTSCHHHHHHHHHHHHHHHHHCSCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcchhhcccCCCEEEEeCCCcccchhHHHHHHHHHHHhhhhccCCceEEecChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111      1   133333221     155677777776533 2 2 56666522     2444544   2567899999


Q ss_pred             HHHc-CCCHHHHHHHH
Q 004972          505 LVSL-GVDVFRIDSAI  519 (721)
Q Consensus       505 l~~~-Gv~~~~ID~a~  519 (721)
                      +++. |+++.++-.++
T Consensus       224 l~~~~Gid~~~v~~~~  239 (402)
T 1dlj_A          224 YAESRKLNSHMIIQGI  239 (402)
T ss_dssp             HHHHTTCCHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHh
Confidence            9987 99999999888

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=99.23  E-value=8.7e-12  Score=145.43  Aligned_cols=89  Identities=15%  Similarity=0.162  Sum_probs=74.3

Q ss_pred             ChHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCCC-CCCC
Q 004972          616 TEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNF-FKPS  694 (721)
Q Consensus       616 ~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~-~~p~  694 (721)
                      +++++.||++.++++|++.++++| + ++++||.++ .++|||+   |||+++|.+|+|+.+++++.+++.++++ |.| 
T Consensus       493 ~~Gfi~Nril~~~~~Ea~~l~~~G-~-~~e~id~~~-~~~g~p~---Gp~~l~D~vGld~~~~i~~~~~~~~~~~~~~~-  565 (725)
T 2wtb_A          493 CTGFAVNRMFFPYTQAAMFLVECG-A-DPYLIDRAI-SKFGMPM---GPFRLCDLVGFGVAIATATQFIENFSERTYKS-  565 (725)
T ss_dssp             STTTTHHHHHHHHHHHHHHHHHTT-C-CHHHHHHHH-HHHTCSS---CHHHHHHHHCHHHHHHHHHHHHHHSGGGCCCC-
T ss_pred             CccHHHHHHHHHHHHHHHHHHHCC-C-CHHHHHHHH-HHcCCCC---CHHHHHHHhchHHHHHHHHHHHHhcCCccCCh-
Confidence            368899999999999999999999 5 799999999 8999998   9999999999999999999999888877 888 


Q ss_pred             HHHHHHH-------HcCCCCcCCC
Q 004972          695 RFLEERA-------TKGIPLSAPV  711 (721)
Q Consensus       695 ~~l~~~~-------~~g~~f~~~~  711 (721)
                      +++++|+       |+|+|||+|+
T Consensus       566 ~~l~~~v~~g~lG~k~g~GfY~y~  589 (725)
T 2wtb_A          566 MIIPLMQEDKRAGEATRKGFYLYD  589 (725)
T ss_dssp             THHHHHHTTC--------------
T ss_pred             HHHHHHHHCCCceecCCceeEeCC
Confidence            9999999       7899999994

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=99.22  E-value=1e-11  Score=123.70  Aligned_cols=151  Identities=13%  Similarity=0.125  Sum_probs=102.0

Q ss_pred             CceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972          304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  383 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  383 (721)
                      .++||+|||+|.||..++..|++.|++|+++|++++.++...           +.|             +..++..+.++
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~-----------~~g-------------~~~~~~~~~~~   82 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLF-----------PSA-------------AQVTFQEEAVS   82 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHS-----------BTT-------------SEEEEHHHHTT
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HcC-------------CceecHHHHHh
Confidence            356899999999999999999999999999999988765431           111             22232225578


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHh----------cccCCCCcEEEe-cCCC-----C-
Q 004972          384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG----------EKTSSQDRIIGA-HFFS-----P-  446 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~----------~~~~~~~r~ig~-h~~~-----p-  446 (721)
                      ++|+||+|+|.  .....+++ +.+.. ++++|++.+++.+++.+.          +.++ ..++++. ++..     + 
T Consensus        83 ~~DvVi~av~~--~~~~~v~~-l~~~~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~~l~-~~~vv~~~n~~~~~~~~~~  157 (215)
T 2vns_A           83 SPEVIFVAVFR--EHYSSLCS-LSDQL-AGKILVDVSNPTEQEHLQHRESNAEYLASLFP-TCTVVKAFNVISAWTLQAG  157 (215)
T ss_dssp             SCSEEEECSCG--GGSGGGGG-GHHHH-TTCEEEECCCCCHHHHHHCSSCHHHHHHHHCT-TSEEEEECTTBCHHHHHTC
T ss_pred             CCCEEEECCCh--HHHHHHHH-HHHhc-CCCEEEEeCCCcccccccccccHHHHHHHHCC-CCeEEeccccccHhHhccc
Confidence            99999999994  33445554 55555 788899988888776542          3232 2355542 2110     1 


Q ss_pred             CCCCCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004972          447 AHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN  485 (721)
Q Consensus       447 ~~~~~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d  485 (721)
                      ....+...++.+  .+++.++.+.++++.+|..++++++
T Consensus       158 ~~~g~~~~~~~g--~~~~~~~~v~~ll~~~G~~~~~~g~  194 (215)
T 2vns_A          158 PRDGNRQVPICG--DQPEAKRAVSEMALAMGFMPVDMGS  194 (215)
T ss_dssp             SCSSCCEEEEEE--SCHHHHHHHHHHHHHTTCEEEECCS
T ss_pred             ccCCceeEEEec--CCHHHHHHHHHHHHHcCCceEeecc
Confidence            111121122332  3799999999999999999999976

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=99.22  E-value=1.8e-11  Score=131.53  Aligned_cols=171  Identities=17%  Similarity=0.040  Sum_probs=109.9

Q ss_pred             CceeEEEEcCCCCcHHHHHHHHHCC-------CceEEEeCCHH-----HHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhc
Q 004972          304 GVRKVAVIGGGLMGSGIATAHILNN-------IYVVLKEVNSE-----YLLKGIKTIEANVRGLVTRGKLTQDKANNALK  371 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~~la~~G-------~~V~l~d~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  371 (721)
                      .++||+|||+|.||+++|..|+++|       ++|++||++++     .++...+....  ... ..+.       ....
T Consensus         7 ~~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~--~~~-~~~~-------~~~~   76 (354)
T 1x0v_A            7 ASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHEN--VKY-LPGH-------KLPP   76 (354)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCC--TTT-STTC-------CCCT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcc--ccc-CCcc-------cCcc
Confidence            3469999999999999999999999       99999999988     65543211000  000 0000       0012


Q ss_pred             CceeccCc-cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH--------HHH-hcccCCCCcEEEe
Q 004972          372 MLKGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--------NIV-GEKTSSQDRIIGA  441 (721)
Q Consensus       372 ~i~~~~~~-~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i--------~~l-~~~~~~~~r~ig~  441 (721)
                      .+..+++. +.+++||+||+|||  .....++++++.++++++++|++.++++.+        .+. .+.+..+ ..+..
T Consensus        77 ~~~~~~~~~~~~~~aD~Vilav~--~~~~~~v~~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~~~~-~~v~~  153 (354)
T 1x0v_A           77 NVVAVPDVVQAAEDADILIFVVP--HQFIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERLGIP-MSVLM  153 (354)
T ss_dssp             TEEEESSHHHHHTTCSEEEECCC--GGGHHHHHHHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHHHHTCC-EEEEE
T ss_pred             CeEEEcCHHHHHcCCCEEEEeCC--HHHHHHHHHHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHHHcCCC-EEEEE
Confidence            35666666 55789999999999  567889999999999999999988887653        121 2222211 11222


Q ss_pred             cCCCCCC--CCCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCc
Q 004972          442 HFFSPAH--VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG  488 (721)
Q Consensus       442 h~~~p~~--~~~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~g  488 (721)
                      .|..+..  ......++.+ ..+++..+.+.++++..|..+.+..|..+
T Consensus       154 gp~~a~~v~~g~~~~~~~~-~~~~~~~~~v~~ll~~~g~~~~~~~di~~  201 (354)
T 1x0v_A          154 GANIASEVADEKFCETTIG-CKDPAQGQLLKELMQTPNFRITVVQEVDT  201 (354)
T ss_dssp             CSCCHHHHHTTCCEEEEEE-CSSHHHHHHHHHHHCBTTEEEEEESCHHH
T ss_pred             CCCcHHHHHhcCCceEEEE-ECCHHHHHHHHHHhCCCCEEEEEcCCchH
Confidence            2222111  0111112222 24688899999999999988888777543

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=99.21  E-value=6e-12  Score=146.71  Aligned_cols=89  Identities=17%  Similarity=0.237  Sum_probs=83.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCCCCCCC--
Q 004972          617 EKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPS--  694 (721)
Q Consensus       617 ~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~--  694 (721)
                      ++++.||++.++++|++.++++| + ++++||.++ .++|||+   |||+++|.+|+|+.+++++.+++.++++|.|+  
T Consensus       496 ~Gfi~Nril~~~~~Ea~~l~~~G-~-~~~~id~~~-~~~G~p~---Gp~~l~D~vGld~~~~i~~~~~~~~~~~~~~~~~  569 (715)
T 1wdk_A          496 PGFLVNRVLFPYFGGFAKLVSAG-V-DFVRIDKVM-EKFGWPM---GPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRR  569 (715)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHHTT-C-CHHHHHHHH-HHHTCSS---CHHHHHHHHCHHHHHHHHHHHHHHCHHHHCCSSC
T ss_pred             CChhhhHHHHHHHHHHHHHHHCC-C-CHHHHHHHH-HHcCCCC---CHHHHHHHhhHHHHHHHHHHHHHhcCCccCCChH
Confidence            68899999999999999999999 4 799999999 8999998   99999999999999999999988888889998  


Q ss_pred             HHHHHHH-------HcCCCCcCCC
Q 004972          695 RFLEERA-------TKGIPLSAPV  711 (721)
Q Consensus       695 ~~l~~~~-------~~g~~f~~~~  711 (721)
                      ++|++|+       |+|+|||+|.
T Consensus       570 ~~l~~~v~~g~lG~k~g~GfY~y~  593 (715)
T 1wdk_A          570 SAIDALYEAKRLGQKNGKGFYAYE  593 (715)
T ss_dssp             CHHHHHHHTTCCBTTTTBSSSEEC
T ss_pred             HHHHHHHhCchhhhcCCcEEEecc
Confidence            9999999       7899999995

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=99.21  E-value=2.6e-11  Score=140.68  Aligned_cols=120  Identities=14%  Similarity=0.155  Sum_probs=97.7

Q ss_pred             CHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHHHHHHHHHHHcCC--CHHHHHHHH-HhcCCCc---cHHHHHHhh
Q 004972          462 SAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV--DVFRIDSAI-RSFGLPI---GPFQLLDLA  535 (721)
Q Consensus       462 ~~e~~~~~~~l~~~lG~~~v~v~d~~gfi~nRl~~~~~~Ea~~l~~~Gv--~~~~ID~a~-~~~G~p~---Gpf~~~D~~  535 (721)
                      +++..+.+..+-+..+...-...+  .-+..|++.+++||+++++++|+  ++.|||.++ .|+|||.   |||+++|.+
T Consensus       612 ~~~~~~~~~~~~~~~~~~~~~~~~--~ei~~R~l~~~~nEa~~~l~egI~~~~~diD~a~~~G~Gfp~~~GGp~~~~D~~  689 (742)
T 3zwc_A          612 DPWLSTFLSQYREVHHIEQRTISK--EEILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASV  689 (742)
T ss_dssp             CHHHHHHHHHHHHHHTCCCCCCCH--HHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHSCCCGGGCCHHHHHHHH
T ss_pred             ChHHHHHHHHHhhhcCCCcCCCCH--HHHHHHHHHHHHHHHHHHhhcCcCCCHHHHHHHHHhCcCCCCCcCCHHHHHHHH
Confidence            455544444444433322221211  23889999999999999999998  899999999 9999998   999999999


Q ss_pred             chHHHHHHHHHHHHhCCC--CCCCcHHHHHHHHcCCCCcccCccccccCC
Q 004972          536 GYGVAAATSKEFDKAFPD--RSFQSPLVDLLLKSGRNGKANGKGLYTYEK  583 (721)
Q Consensus       536 Gld~~~~~~~~l~~~~~~--~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~  583 (721)
                      |++.+.+.++.+...+++  ++.|+++|++|+++|....+.++|||.+.+
T Consensus       690 G~~~~v~~l~~l~~~~g~~~~~~P~~~L~~ma~~G~~~f~~~~~~~~~~~  739 (742)
T 3zwc_A          690 GLPTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQGSPPLKEWQSLAGPHG  739 (742)
T ss_dssp             CHHHHHHHHHHHHHHCTTCGGGSCCHHHHHHHHTTCCCGGGHHHHHSTTC
T ss_pred             HHHHHHHHHHHHHHHcCCCCccCCCHHHHHHHHcCCCcccccccccCCCC
Confidence            999999999999999997  455999999999999999999999998764

>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=99.21  E-value=7.2e-11  Score=123.99  Aligned_cols=135  Identities=14%  Similarity=0.055  Sum_probs=101.6

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEE
Q 004972           26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (721)
Q Consensus        26 Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav  105 (721)
                      ++++++..+...++++.+.+.. +-+|.|.-.++++. |....+.          -........+ ..+.++++|+|++|
T Consensus       153 G~~~~~~~~Ka~r~~~~A~~~~-lPlI~lvDt~Ga~~-g~~aE~~----------g~~~~~a~~l-~al~~~~vPvIavV  219 (339)
T 2f9y_A          153 GMPAPEGYRKALRLMQMAERFK-MPIITFIDTPGAYP-GVGAEER----------GQSEAIARNL-REMSRLGVPVVCTV  219 (339)
T ss_dssp             GCCCHHHHHHHHHHHHHHHHTT-CCEEEEEEESCSCC-SHHHHHT----------THHHHHHHHH-HHHHTCSSCEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHhhcC-CCEEEEEeCCCCcc-chHHHHH----------HHHHHHHHHH-HHHHhCCCCEEEEE
Confidence            6899999999999999888664 34555543332222 2211110          0112333455 56889999999999


Q ss_pred             CCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcC
Q 004972          106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT  182 (721)
Q Consensus       106 ~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~  182 (721)
                      +|.|.|||+.++++||++||.++++|++      +.|.   +..+++..+...|.++    ..++|++|+++|+||+|+|
T Consensus       220 ~G~a~GGGa~~~~~~D~via~p~A~~~v------~~Peg~asil~~~~~~~~~Aae~----~~itA~~a~~~GlVd~VV~  289 (339)
T 2f9y_A          220 IGEGGSGGALAIGVGDKVNMLQYSTYSV------ISPEGCASILWKSADKAPLAAEA----MGIIRPRLKELKLIDSIIP  289 (339)
T ss_dssp             EEEEEHHHHHTTCCCSEEEECTTCEEES------SCHHHHHHHHSSCSTTHHHHHHH----HTCSHHHHHTTTSCSCCCC
T ss_pred             eCCcCcHHHHHHhccCeeeecCCCEEEe------eccchHHHHHHHhhccHHHHHHH----cCCCHHHHHHcCCeeEEec
Confidence            9999999999999999999999999997      3453   5667777777888887    6799999999999999998


Q ss_pred             C
Q 004972          183 S  183 (721)
Q Consensus       183 ~  183 (721)
                      .
T Consensus       290 e  290 (339)
T 2f9y_A          290 E  290 (339)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=99.20  E-value=2.1e-11  Score=128.66  Aligned_cols=123  Identities=20%  Similarity=0.303  Sum_probs=89.5

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  383 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  383 (721)
                      ++||+|||+|.||.++|..++..|+ +|+++|+++++++.....+.+.+....            ...+++.++++++++
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~------------~~~~i~~t~d~~al~   71 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAY------------SNCKVSGSNTYDDLA   71 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHT------------CCCCEEEECCGGGGT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcC------------CCcEEEECCCHHHhC
Confidence            4699999999999999999999998 999999999988765444433322111            124577778888899


Q ss_pred             CCCEEEEcc--cCCh-----------------HHHHHHHHHHHhhCCCCeEE--EecCCCCCHHHHhcccC--CCCcEEE
Q 004972          384 DVDMVIEAV--IESV-----------------PLKQKIFSELEKACPPHCIL--ATNTSTIDLNIVGEKTS--SQDRIIG  440 (721)
Q Consensus       384 ~aDlVIeav--pe~~-----------------~~k~~v~~~l~~~~~~~~ii--~s~ts~~~i~~l~~~~~--~~~r~ig  440 (721)
                      +||+||+++  |++.                 .+++++++++.+++ +++++  +||++.+. +.+.....  +|.|++|
T Consensus        72 ~aD~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNP~~~~-t~~~~~~~g~~~~rviG  149 (322)
T 1t2d_A           72 GADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVTNPVDVM-VQLLHQHSGVPKNKIIG  149 (322)
T ss_dssp             TCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSSHHHH-HHHHHHHHCCCGGGEEE
T ss_pred             CCCEEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCChHHH-HHHHHHhcCCChHHEEe
Confidence            999999998  6532                 37889999999998 56655  45655443 34443333  5667777


Q ss_pred             e
Q 004972          441 A  441 (721)
Q Consensus       441 ~  441 (721)
                      +
T Consensus       150 ~  150 (322)
T 1t2d_A          150 L  150 (322)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=99.18  E-value=1.7e-11  Score=127.82  Aligned_cols=168  Identities=10%  Similarity=-0.060  Sum_probs=109.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  385 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  385 (721)
                      +||+|||+|.||+.+|..|+++|++|++||++++.++..           ...+...    ......+. .++.+.++++
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l-----------~~~~~~~----~~~~~~~~-~~~~~~~~~~   64 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSV-----------NLVETDG----SIFNESLT-ANDPDFLATS   64 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEE-----------EEECTTS----CEEEEEEE-ESCHHHHHTC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeE-----------EEEcCCC----ceeeeeee-ecCccccCCC
Confidence            379999999999999999999999999999998653321           1111000    00000112 2334567889


Q ss_pred             CEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH-HHhcccCCCCcEE-EecCC-----CCCCC---CCe-eE
Q 004972          386 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKTSSQDRII-GAHFF-----SPAHV---MPL-LE  454 (721)
Q Consensus       386 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~-~l~~~~~~~~r~i-g~h~~-----~p~~~---~~l-vE  454 (721)
                      |+||.|+|..  ...++++++.+.++++++|++.++++... .+.+.+.  . ++ |.+++     .| ..   ... +.
T Consensus        65 d~vi~~v~~~--~~~~v~~~l~~~l~~~~~vv~~~~g~~~~~~l~~~~~--~-~~~g~~~~~~~~~~p-~~~~~~~g~~~  138 (291)
T 1ks9_A           65 DLLLVTLKAW--QVSDAVKSLASTLPVTTPILLIHNGMGTIEELQNIQQ--P-LLMGTTTHAARRDGN-VIIHVANGITH  138 (291)
T ss_dssp             SEEEECSCGG--GHHHHHHHHHTTSCTTSCEEEECSSSCTTGGGTTCCS--C-EEEEEECCEEEEETT-EEEEEECCCEE
T ss_pred             CEEEEEecHH--hHHHHHHHHHhhCCCCCEEEEecCCCCcHHHHHHhcC--C-eEEEEEeEccEEcCC-EEEEecccceE
Confidence            9999999944  46788899999999899888877777654 4444432  2 44 44432     23 10   000 11


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhh
Q 004972          455 IVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFF  496 (721)
Q Consensus       455 iv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~gfi~nRl~~  496 (721)
                      +.+.. .+++.++.+.++++.+|..+++.+|..+...+.+..
T Consensus       139 i~~~~-~~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~  179 (291)
T 1ks9_A          139 IGPAR-QQDGDYSYLADILQTVLPDVAWHNNIRAELWRKLAV  179 (291)
T ss_dssp             EEESS-GGGTTCTHHHHHHHTTSSCEEECTTHHHHHHHHHHH
T ss_pred             EccCC-CCcchHHHHHHHHHhcCCCCeecHHHHHHHHHHHee
Confidence            22211 345678889999999999988888866666555543

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=99.18  E-value=2.8e-11  Score=128.42  Aligned_cols=123  Identities=21%  Similarity=0.263  Sum_probs=90.1

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcc-cc
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-EF  382 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l  382 (721)
                      .+||+|||+|.||.++|..|+..|+ +|++||+++++++.....+.+.+..+   +         ...+++.++|++ ++
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~---~---------~~~~i~~t~d~~ea~   76 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVV---D---------TNVSVRAEYSYEAAL   76 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHT---T---------CCCCEEEECSHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhcc---C---------CCCEEEEeCCHHHHh
Confidence            4589999999999999999999998 99999999998887544444333211   1         124677888885 79


Q ss_pred             CCCCEEEEcc--cCCh-----------------HHHHHHHHHHHhhCCCCeEE--EecCCCCCHHHHhcccC--CCCcEE
Q 004972          383 KDVDMVIEAV--IESV-----------------PLKQKIFSELEKACPPHCIL--ATNTSTIDLNIVGEKTS--SQDRII  439 (721)
Q Consensus       383 ~~aDlVIeav--pe~~-----------------~~k~~v~~~l~~~~~~~~ii--~s~ts~~~i~~l~~~~~--~~~r~i  439 (721)
                      ++||+||+++  |++.                 .+++++++++.+++ +++++  +||++++. +.++....  .|+|++
T Consensus        77 ~~aDiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNP~~~~-t~~~~~~~~~~~~rvi  154 (331)
T 1pzg_A           77 TGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVTNPLDCM-VKVMCEASGVPTNMIC  154 (331)
T ss_dssp             TTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHH-HHHHHHHHCCCGGGEE
T ss_pred             CCCCEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCchHHH-HHHHHHhcCCChhcEE
Confidence            9999999999  7654                 34889999999998 56665  35555543 34443332  567887


Q ss_pred             Ee
Q 004972          440 GA  441 (721)
Q Consensus       440 g~  441 (721)
                      |+
T Consensus       155 G~  156 (331)
T 1pzg_A          155 GM  156 (331)
T ss_dssp             EC
T ss_pred             ec
Confidence            75

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=99.16  E-value=1.9e-10  Score=122.54  Aligned_cols=188  Identities=13%  Similarity=-0.001  Sum_probs=111.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  385 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  385 (721)
                      +||+|||+|.||+.+|..|+++|++|++||+++++++...+.-.+    ....+.        .+ .+..+++.+.++++
T Consensus        15 ~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~----~~~~~~--------~~-~~~~~~~~~~~~~a   81 (335)
T 1z82_A           15 MRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTS----PYVEES--------KI-TVRATNDLEEIKKE   81 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCB----TTBTTC--------CC-CSEEESCGGGCCTT
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCc----ccCCCC--------ee-eEEEeCCHHHhcCC
Confidence            489999999999999999999999999999999887664321000    000000        00 34556666448899


Q ss_pred             CEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHH---HhcccC--CCC-cEEEecCCCCCC--CCCeeEEec
Q 004972          386 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI---VGEKTS--SQD-RIIGAHFFSPAH--VMPLLEIVR  457 (721)
Q Consensus       386 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~---l~~~~~--~~~-r~ig~h~~~p~~--~~~lvEiv~  457 (721)
                      |+||.|||  .....+++.++.+   +++++++.++++...+   +++.+.  .+. ..+...|..+..  .+....++.
T Consensus        82 DvVil~vk--~~~~~~v~~~l~~---~~~~vv~~~nGi~~~~~~~l~~~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~  156 (335)
T 1z82_A           82 DILVIAIP--VQYIREHLLRLPV---KPSMVLNLSKGIEIKTGKRVSEIVEEILGCPYAVLSGPSHAEEVAKKLPTAVTL  156 (335)
T ss_dssp             EEEEECSC--GGGHHHHHTTCSS---CCSEEEECCCCCCTTTCCCHHHHHHHHTCCCEEEEESSCCHHHHHTTCCEEEEE
T ss_pred             CEEEEECC--HHHHHHHHHHhCc---CCCEEEEEeCCCCCCccCcHHHHHHHHcCCceEEEECCccHHHHhCCCceEEEE
Confidence            99999999  4666677666544   6778877666655421   221111  011 111222222211  111112222


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCeeEEEcCCCc----------------------hhhh---hhhhHHHHHHHHHHHc-CCC
Q 004972          458 TERTSAQVILDLMTVGKIIKKVPVVVGNCTG----------------------FAVN---RAFFPYSQSARLLVSL-GVD  511 (721)
Q Consensus       458 ~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~g----------------------fi~n---Rl~~~~~~Ea~~l~~~-Gv~  511 (721)
                      +.. +   .+.+.++++..|..+.+..|..|                      +..|   .++...+.|+..+.+. |++
T Consensus       157 g~~-~---~~~~~~ll~~~g~~~~~~~di~~~~~~k~l~N~~~~~~g~~~g~~~~~n~~~a~~~~~~~E~~~la~a~G~~  232 (335)
T 1z82_A          157 AGE-N---SKELQKRISTEYFRVYTCEDVVGVEIAGALKNVIAIAAGILDGFGGWDNAKAALETRGIYEIARFGMFFGAD  232 (335)
T ss_dssp             EET-T---HHHHHHHHCCSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             Eeh-h---HHHHHHHhCCCCEEEEecCchHHHHHHHHHHhHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHhCCC
Confidence            211 2   77899999999988877766432                      1111   2233456688777765 887


Q ss_pred             HHHH
Q 004972          512 VFRI  515 (721)
Q Consensus       512 ~~~I  515 (721)
                      ++++
T Consensus       233 ~~~~  236 (335)
T 1z82_A          233 QKTF  236 (335)
T ss_dssp             HHHH
T ss_pred             hhhh
Confidence            7654

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=99.14  E-value=1e-10  Score=123.41  Aligned_cols=168  Identities=11%  Similarity=0.003  Sum_probs=105.8

Q ss_pred             CceeEEEEcCCCCcHHHHHHHHHC-----C-CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHH-HHHHhhcCceec
Q 004972          304 GVRKVAVIGGGLMGSGIATAHILN-----N-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD-KANNALKMLKGV  376 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~~la~~-----G-~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~  376 (721)
                      .++||+|||+|.||+.+|..|+++     | ++|++||+ ++.++...+.          .|..... .-......+..+
T Consensus         7 ~~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~----------~g~~~~~~~~~~~~~~~~~~   75 (317)
T 2qyt_A            7 QPIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAA----------GGLRVVTPSRDFLARPTCVT   75 (317)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHH----------TSEEEECSSCEEEECCSEEE
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhc----------CCeEEEeCCCCeEEecceEe
Confidence            346899999999999999999999     9 99999999 7665554210          1100000 000000123334


Q ss_pred             cCccccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH-HHHhcccCCCCcEE-EecCCCCCCC-----
Q 004972          377 LDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKTSSQDRII-GAHFFSPAHV-----  449 (721)
Q Consensus       377 ~~~~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i-~~l~~~~~~~~r~i-g~h~~~p~~~-----  449 (721)
                      ++.+.+.++|+||.|||...  ..++++++.+.++++++|++.+.++.. ..+.+.++.. +++ |+.+...+..     
T Consensus        76 ~~~~~~~~~D~vil~vk~~~--~~~v~~~i~~~l~~~~~iv~~~nG~~~~~~l~~~l~~~-~v~~g~~~~~a~~~~pg~~  152 (317)
T 2qyt_A           76 DNPAEVGTVDYILFCTKDYD--MERGVAEIRPMIGQNTKILPLLNGADIAERMRTYLPDT-VVWKGCVYISARKSAPGLI  152 (317)
T ss_dssp             SCHHHHCCEEEEEECCSSSC--HHHHHHHHGGGEEEEEEEEECSCSSSHHHHHTTTSCTT-TBCEEEEEEEEEEEETTEE
T ss_pred             cCccccCCCCEEEEecCccc--HHHHHHHHHhhcCCCCEEEEccCCCCcHHHHHHHCCCC-cEEEEEEEEEEEEcCCCEE
Confidence            55556789999999998443  478888998888888888887778776 4555555432 332 3322111111     


Q ss_pred             ---CCeeEE-ecC--CCCCHHHHHHHHHHHHHcCCeeEEEcCC
Q 004972          450 ---MPLLEI-VRT--ERTSAQVILDLMTVGKIIKKVPVVVGNC  486 (721)
Q Consensus       450 ---~~lvEi-v~~--~~t~~e~~~~~~~l~~~lG~~~v~v~d~  486 (721)
                         .....+ +..  ...+++.+ .+.++++..|..+.+.+|.
T Consensus       153 ~~~~~g~~~~ig~~~~~~~~~~~-~~~~ll~~~g~~~~~~~di  194 (317)
T 2qyt_A          153 TLEADRELFYFGSGLPEQTDDEV-RLAELLTAAGIRAYNPTDI  194 (317)
T ss_dssp             EEEEEEEEEEEECCSSSCCHHHH-HHHHHHHHTTCCEECCSCH
T ss_pred             EEcCCCceEEEcCCCCCCcCHHH-HHHHHHHHCCCCCEEchHH
Confidence               111112 322  33457777 8999999999887777663

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=99.12  E-value=1.5e-10  Score=123.31  Aligned_cols=163  Identities=13%  Similarity=0.048  Sum_probs=105.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeC--CHHHHHHHHHHHHHHHHhhhhcCC-CCHHHHHHhhcCceecc--Cc-
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEV--NSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVL--DY-  379 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~--~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~--~~-  379 (721)
                      +||+|||+|.||+.+|..|+++|++|++||+  +++.++...+           .+. +...  .. ...+..++  ++ 
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~-----------~~~~~~~g--~~-~~~~~~~~~~~~~   66 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISA-----------GREHPRLG--VK-LNGVEIFWPEQLE   66 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHT-----------TCCBTTTT--BC-CCSEEEECGGGHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHH-----------hCcCcccC--cc-ccceEEecHHhHH
Confidence            3799999999999999999999999999999  8887665421           111 0000  00 02234454  55 


Q ss_pred             cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCC---C---HHHHhcccCC--CCcEEEecCCCCCCC--
Q 004972          380 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI---D---LNIVGEKTSS--QDRIIGAHFFSPAHV--  449 (721)
Q Consensus       380 ~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~---~---i~~l~~~~~~--~~r~ig~h~~~p~~~--  449 (721)
                      +.+++||+||.|||  .....+++.++.+ ++++++|++.++++   +   ...+.+.+..  +....+.....|...  
T Consensus        67 ~~~~~~D~vi~~v~--~~~~~~v~~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~p~~~~~  143 (335)
T 1txg_A           67 KCLENAEVVLLGVS--TDGVLPVMSRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIARE  143 (335)
T ss_dssp             HHHTTCSEEEECSC--GGGHHHHHHHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHHH
T ss_pred             HHHhcCCEEEEcCC--hHHHHHHHHHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCCCcEEEEECCCcHHH
Confidence            45789999999999  4467888899988 88899888877666   2   2344444332  110001111222221  


Q ss_pred             ---CCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCC
Q 004972          450 ---MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNC  486 (721)
Q Consensus       450 ---~~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~  486 (721)
                         .....++.+. .+++..+.+.++++..|..+.+..|.
T Consensus       144 ~~~g~~~~~~~~~-~~~~~~~~~~~ll~~~g~~~~~~~di  182 (335)
T 1txg_A          144 VAKRMPTTVVFSS-PSESSANKMKEIFETEYFGVEVTTDI  182 (335)
T ss_dssp             HHTTCCEEEEEEC-SCHHHHHHHHHHHCBTTEEEEEESCH
T ss_pred             HHccCCcEEEEEe-CCHHHHHHHHHHhCCCcEEEEecCch
Confidence               1111233332 36888999999999999888777774

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=99.11  E-value=1.4e-10  Score=125.59  Aligned_cols=170  Identities=11%  Similarity=-0.015  Sum_probs=109.6

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCC-------CceEEEeCCHH-----HHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcC
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNN-------IYVVLKEVNSE-----YLLKGIKTIEANVRGLVTRGKLTQDKANNALKM  372 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G-------~~V~l~d~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  372 (721)
                      ++||+|||+|.||+++|..|+++|       ++|++||++++     .++...+.       ......+. .  ......
T Consensus        21 ~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~-------~~~~~~~~-~--~~~~~~   90 (375)
T 1yj8_A           21 PLKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNK-------HENTKYLK-G--VPLPHN   90 (375)
T ss_dssp             CBCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHH-------CBCTTTST-T--CBCCTT
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhc-------CcccccCC-c--ccCcCC
Confidence            468999999999999999999999       99999999987     55443211       00000000 0  001124


Q ss_pred             ceeccCc-cccCCCCEEEEcccCChHHHHHHHHHHHh----hCCCCeEEEecCCCCCHH-----HH----hcccCCCCcE
Q 004972          373 LKGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEK----ACPPHCILATNTSTIDLN-----IV----GEKTSSQDRI  438 (721)
Q Consensus       373 i~~~~~~-~~l~~aDlVIeavpe~~~~k~~v~~~l~~----~~~~~~ii~s~ts~~~i~-----~l----~~~~~~~~r~  438 (721)
                      +..+++. +.+++||+||+|||  .....+++.++.+    .+++++++++.++++.+.     .+    .+....+ ..
T Consensus        91 i~~~~~~~ea~~~aDvVilav~--~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~~~~~~-~~  167 (375)
T 1yj8_A           91 IVAHSDLASVINDADLLIFIVP--CQYLESVLASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNYISDFLNIP-CS  167 (375)
T ss_dssp             EEEESSTHHHHTTCSEEEECCC--HHHHHHHHHHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHHHHHHSSSC-EE
T ss_pred             eEEECCHHHHHcCCCEEEEcCC--HHHHHHHHHHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHHHHHHcCCC-EE
Confidence            6666776 55789999999999  6788899999988    888999999888776541     11    1222211 11


Q ss_pred             EEecCCCCCC--CCCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCc
Q 004972          439 IGAHFFSPAH--VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG  488 (721)
Q Consensus       439 ig~h~~~p~~--~~~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~g  488 (721)
                      +...+..+..  ......++.+ ..+++..+.+.++++..|..+.+..|..|
T Consensus       168 v~~gp~~a~~v~~g~~~~~~~~-~~~~~~~~~v~~ll~~~g~~~~~~~di~~  218 (375)
T 1yj8_A          168 ALSGANIAMDVAMENFSEATIG-GNDKDSLVIWQRVFDLPYFKINCVNETIE  218 (375)
T ss_dssp             EEECSCCHHHHHTTCCEEEEEE-CSCHHHHHHHHHHHCBTTEEEEEESCSHH
T ss_pred             EEeCCchHHHHHhCCCeEEEEe-cCCHHHHHHHHHHhCCCCeEEEEeCCcHH
Confidence            1112211110  0111122222 23678899999999999988888887654

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=99.09  E-value=1.6e-10  Score=124.87  Aligned_cols=155  Identities=10%  Similarity=0.021  Sum_probs=110.3

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHC------CCceEEEeCCHH-HHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceecc
Q 004972          305 VRKVAVIGGGLMGSGIATAHILN------NIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL  377 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~------G~~V~l~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  377 (721)
                      ++||+|||+|+||.++|..|.++      |++|++.+++.+ ..+.+           .+.|....        .-...+
T Consensus        54 iKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A-----------~e~G~~v~--------d~ta~s  114 (525)
T 3fr7_A           54 IKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEA-----------RAAGFTEE--------SGTLGD  114 (525)
T ss_dssp             CSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHH-----------HHTTCCTT--------TTCEEE
T ss_pred             CCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHH-----------HHCCCEEe--------cCCCCC
Confidence            37899999999999999999999      999987776543 22222           12221100        000122


Q ss_pred             CccccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhc---ccCCCCcEEEecCCCCCCC-----
Q 004972          378 DYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGE---KTSSQDRIIGAHFFSPAHV-----  449 (721)
Q Consensus       378 ~~~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~---~~~~~~r~ig~h~~~p~~~-----  449 (721)
                      ..+++++||+||.++|  .....+++.++.++++++++| +...++.+..+.+   ..+....++.+||..|.+.     
T Consensus       115 ~aEAa~~ADVVILaVP--~~~~~eVl~eI~p~LK~GaIL-s~AaGf~I~~le~~~i~~p~dv~VVrVmPNtPg~~VR~~y  191 (525)
T 3fr7_A          115 IWETVSGSDLVLLLIS--DAAQADNYEKIFSHMKPNSIL-GLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLY  191 (525)
T ss_dssp             HHHHHHHCSEEEECSC--HHHHHHHHHHHHHHSCTTCEE-EESSSHHHHHHHHTTCCCCTTSEEEEEEESSCHHHHHHHH
T ss_pred             HHHHHhcCCEEEECCC--hHHHHHHHHHHHHhcCCCCeE-EEeCCCCHHHHhhhcccCCCCCcEEEEecCCCchhHHHHH
Confidence            2267889999999999  555567889999999999985 7788888877664   3333457999999999875     


Q ss_pred             --C-----CeeE--EecCCCCCHHHHHHHHHHHHHcCCeeE
Q 004972          450 --M-----PLLE--IVRTERTSAQVILDLMTVGKIIKKVPV  481 (721)
Q Consensus       450 --~-----~lvE--iv~~~~t~~e~~~~~~~l~~~lG~~~v  481 (721)
                        +     ..+.  +..+...+.+..+.+..++..+|...+
T Consensus       192 ~~G~~~~g~Gv~~liAv~qd~tgea~e~alala~aiG~~~v  232 (525)
T 3fr7_A          192 VQGKEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFT  232 (525)
T ss_dssp             HHHTTSTTCSCCEEEEEEECSSSCHHHHHHHHHHHTTCSEE
T ss_pred             hcccccccCCccEEEEcCCCCCHHHHHHHHHHHHHCCCCee
Confidence              2     2222  334455677889999999999998753

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=99.09  E-value=5.3e-10  Score=119.08  Aligned_cols=169  Identities=11%  Similarity=0.144  Sum_probs=107.9

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  384 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  384 (721)
                      ++||+|||+|.||+.+|..|+++|++|++|+++ +.++...           +.|......-......+..+++.+.+.+
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~-~~~~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~   70 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG-ATLQALQ-----------TAGLRLTEDGATHTLPVRATHDAAALGE   70 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH-HHHHHHH-----------HTCEEEEETTEEEEECCEEESCHHHHCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh-HHHHHHH-----------HCCCEEecCCCeEEEeeeEECCHHHcCC
Confidence            569999999999999999999999999999995 4544332           1111000000000112445566666789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCC-------------------HH-HHhcccCCCCcEEE-ecC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID-------------------LN-IVGEKTSSQDRIIG-AHF  443 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~-------------------i~-~l~~~~~~~~r~ig-~h~  443 (721)
                      +|+||.|||  .....++++++.++++++++|++.+++++                   .. .+.+.++ ..++++ +-+
T Consensus        71 ~D~Vilavk--~~~~~~~~~~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~-~~~v~~gv~~  147 (335)
T 3ghy_A           71 QDVVIVAVK--APALESVAAGIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIP-TRHVLGCVVH  147 (335)
T ss_dssp             CSEEEECCC--HHHHHHHHGGGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSC-GGGEEEEEEC
T ss_pred             CCEEEEeCC--chhHHHHHHHHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcC-cccEEEEEEE
Confidence            999999999  56677888999999999999998888853                   11 3344442 235443 222


Q ss_pred             C-----CCCCC---CCeeEEecC--CCCCHHHHHHHHHHHHHcCCeeEEEcCCCch
Q 004972          444 F-----SPAHV---MPLLEIVRT--ERTSAQVILDLMTVGKIIKKVPVVVGNCTGF  489 (721)
Q Consensus       444 ~-----~p~~~---~~lvEiv~~--~~t~~e~~~~~~~l~~~lG~~~v~v~d~~gf  489 (721)
                      .     .|-..   ... .++-|  ...+.+..+.+.+++...|....+..|..+.
T Consensus       148 ~~a~~~~pg~v~~~~~g-~~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~  202 (335)
T 3ghy_A          148 LTCATVSPGHIRHGNGR-RLILGEPAGGASPRLASIAALFGRAGLQAECSEAIQRD  202 (335)
T ss_dssp             CCEEESSTTEEEECSCC-EEEEECTTCSCCHHHHHHHHHHHHTTCEEEECSCHHHH
T ss_pred             EEEEEcCCcEEEECCCC-eEEEecCCCCcCHHHHHHHHHHHhCCCCcEeCchHHHH
Confidence            1     12111   111 12222  2234577888999999999888777776663

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=99.09  E-value=6.6e-10  Score=117.41  Aligned_cols=174  Identities=15%  Similarity=0.084  Sum_probs=116.5

Q ss_pred             CceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972          304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  383 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  383 (721)
                      .++||+|||+|.||+.+|..|+++|++|++| ++++.++...+.      ...-... .    ......+..+++.+.+.
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~------g~~~~~~-~----~~~~~~~~~~~~~~~~~   85 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEAT------GLRLETQ-S----FDEQVKVSASSDPSAVQ   85 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHH------CEEEECS-S----CEEEECCEEESCGGGGT
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhC------CeEEEcC-C----CcEEEeeeeeCCHHHcC
Confidence            3579999999999999999999999999999 998887765321      0000000 0    00112455667777788


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH-HHhcccCCCCcEEEec------CCCCCCC---CCee
Q 004972          384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKTSSQDRIIGAH------FFSPAHV---MPLL  453 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~-~l~~~~~~~~r~ig~h------~~~p~~~---~~lv  453 (721)
                      ++|+||+|||  .....++++++.++++++++|++.++++... .+.+.++  .++++..      ...|-..   ....
T Consensus        86 ~~D~vilavk--~~~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~l~~~~~--~~vl~g~~~~~a~~~gP~~~~~~~~g~  161 (318)
T 3hwr_A           86 GADLVLFCVK--STDTQSAALAMKPALAKSALVLSLQNGVENADTLRSLLE--QEVAAAVVYVATEMAGPGHVRHHGRGE  161 (318)
T ss_dssp             TCSEEEECCC--GGGHHHHHHHHTTTSCTTCEEEEECSSSSHHHHHHHHCC--SEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCEEEEEcc--cccHHHHHHHHHHhcCCCCEEEEeCCCCCcHHHHHHHcC--CcEEEEEEEEeEEEcCCeEEEEcCCce
Confidence            9999999999  4567889999999999999999999999884 5555554  4555421      1122211   1111


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhH
Q 004972          454 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFP  497 (721)
Q Consensus       454 Eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~gfi~nRl~~~  497 (721)
                       ++-+.   .+..+.+.+++...|..+.+..|..+.....++..
T Consensus       162 -~~ig~---~~~~~~l~~~l~~~~~~~~~~~Di~~~~w~Kl~~N  201 (318)
T 3hwr_A          162 -LVIEP---TSHGANLAAIFAAAGVPVETSDNVRGALWAKLILN  201 (318)
T ss_dssp             -EEECC---CTTTHHHHHHHHHTTCCEEECSCHHHHHHHHHHHH
T ss_pred             -EEEcC---CHHHHHHHHHHHhCCCCcEechHHHHHHHHHHHHH
Confidence             11222   23456788888888888877788776666665443

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=99.06  E-value=2.2e-10  Score=120.99  Aligned_cols=158  Identities=18%  Similarity=0.204  Sum_probs=104.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  383 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  383 (721)
                      +||+|||+|.||+++|..|+..|+  +|+++|+++++++.....+.+.+. ..  .          ..++.. ++.++++
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~-~~--~----------~~~i~~-~d~~~~~   66 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTP-FT--R----------RANIYA-GDYADLK   66 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGG-GS--C----------CCEEEE-CCGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhh-hc--C----------CcEEEe-CCHHHhC
Confidence            489999999999999999999999  999999999887764433322211 00  0          123444 3577889


Q ss_pred             CCCEEEEcccCC--------------hHHHHHHHHHHHhhCCCCeEEE--ecCCCCCHHHHhccc-C-CCCcEEEecCCC
Q 004972          384 DVDMVIEAVIES--------------VPLKQKIFSELEKACPPHCILA--TNTSTIDLNIVGEKT-S-SQDRIIGAHFFS  445 (721)
Q Consensus       384 ~aDlVIeavpe~--------------~~~k~~v~~~l~~~~~~~~ii~--s~ts~~~i~~l~~~~-~-~~~r~ig~h~~~  445 (721)
                      +||+||+|++..              ..+++++++++.+++ ++++++  ||++... +.+.... . .+.|++|+    
T Consensus        67 ~aDvViiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp~~~~-~~~~~~~~~~~~~rviG~----  140 (319)
T 1a5z_A           67 GSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYA-PDSIVIVVTNPVDVL-TYFFLKESGMDPRKVFGS----  140 (319)
T ss_dssp             TCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHHHH-HHHHHHHHTCCTTTEEEC----
T ss_pred             CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeCCcHHHH-HHHHHHHhCCChhhEEee----
Confidence            999999999852              246788899999986 455544  3433332 3343332 2 56788776    


Q ss_pred             CCCCCCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhh---hhhhHHHH
Q 004972          446 PAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVN---RAFFPYSQ  500 (721)
Q Consensus       446 p~~~~~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~gfi~n---Rl~~~~~~  500 (721)
                                    .|..++......+.+.+|..+   ++.++++.+   ..++++++
T Consensus       141 --------------~t~ld~~r~~~~la~~lgv~~---~~v~~~v~G~hg~~~~p~~s  181 (319)
T 1a5z_A          141 --------------GTVLDTARLRTLIAQHCGFSP---RSVHVYVIGEHGDSEVPVWS  181 (319)
T ss_dssp             --------------TTHHHHHHHHHHHHHHHTCCG---GGEECCEEBCSSTTCEECGG
T ss_pred             --------------CccHHHHHHHHHHHHHhCcCH---HHceEEEEeCCCCCcccchh
Confidence                          356667777777778888544   455555555   44444443

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=99.05  E-value=2.4e-10  Score=119.31  Aligned_cols=122  Identities=21%  Similarity=0.261  Sum_probs=82.9

Q ss_pred             CCCCceeEEEEcCCCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccC
Q 004972          301 KPRGVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD  378 (721)
Q Consensus       301 ~~~~~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  378 (721)
                      ...+++||+|||+|.||.++|..++..|+  +|+++|++++....+.+..    +  ..            ..++..+++
T Consensus        10 ~~~~~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~----~--~~------------~~~i~~t~d   71 (303)
T 2i6t_A           10 ENKTVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLE----I--FN------------LPNVEISKD   71 (303)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHH----H--HT------------CTTEEEESC
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHh----h--hc------------CCCeEEeCC
Confidence            34456899999999999999999999999  9999999987322222211    0  00            125777788


Q ss_pred             ccccCCCCEEEEcc-------------cCChHHHHHHHHHHHhhCCCCeEE--EecCCCCCHHHHhcccC-CCCcEEEe
Q 004972          379 YSEFKDVDMVIEAV-------------IESVPLKQKIFSELEKACPPHCIL--ATNTSTIDLNIVGEKTS-SQDRIIGA  441 (721)
Q Consensus       379 ~~~l~~aDlVIeav-------------pe~~~~k~~v~~~l~~~~~~~~ii--~s~ts~~~i~~l~~~~~-~~~r~ig~  441 (721)
                      ++++++||+||+++             .++..+++++++++.+++ +++++  +||++......+..... .+.|++|+
T Consensus        72 ~~~l~~aD~Vi~aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~sNP~~~~t~~~~~~~~~p~~rviG~  149 (303)
T 2i6t_A           72 LSASAHSKVVIFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVASQPVEIMTYVTWKLSTFPANRVIGI  149 (303)
T ss_dssp             GGGGTTCSEEEECCCC----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             HHHHCCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcCChHHHHHHHHHHhcCCCHHHeeCC
Confidence            88999999999997             889999999999999998 56655  45543322222222222 35688876

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=98.53  E-value=5e-11  Score=117.19  Aligned_cols=148  Identities=14%  Similarity=0.165  Sum_probs=99.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  385 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  385 (721)
                      +||+|||+|.||..+|..|.+.|++|++||++++ .+...           ..+             +..++..+.++++
T Consensus        20 ~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~-~~~~~-----------~~g-------------~~~~~~~~~~~~a   74 (201)
T 2yjz_A           20 GVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ-VSSLL-----------PRG-------------AEVLCYSEAASRS   74 (201)
Confidence            5799999999999999999999999999999876 32210           111             1222223567899


Q ss_pred             CEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH--------HHHhcccCCCCcEEEecCCCCCCCCC-ee---
Q 004972          386 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--------NIVGEKTSSQDRIIGAHFFSPAHVMP-LL---  453 (721)
Q Consensus       386 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i--------~~l~~~~~~~~r~ig~h~~~p~~~~~-lv---  453 (721)
                      |+||.|+|..  ....++ ++... .++++|++.+++++.        ..+.+.++. .+++...++.|..... ..   
T Consensus        75 DvVilav~~~--~~~~v~-~l~~~-~~~~ivI~~~~G~~~~~~~~~~~~~l~~~~~~-~~vvra~~n~~a~~~~~g~l~g  149 (201)
T 2yjz_A           75 DVIVLAVHRE--HYDFLA-ELADS-LKGRVLIDVSNNQKMNQYPESNAEYLAQLVPG-AHVVKAFNTISAWALQSGTLDA  149 (201)
Confidence            9999999943  344555 45443 467788887777753        334433332 3565555555554332 11   


Q ss_pred             ---EEecCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004972          454 ---EIVRTERTSAQVILDLMTVGKIIKKVPVVVGN  485 (721)
Q Consensus       454 ---Eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~d  485 (721)
                         .++.+.  +++..+.+.++++.+|+.++++++
T Consensus       150 ~~~~~~~g~--~~~~~~~v~~ll~~~G~~~~~~G~  182 (201)
T 2yjz_A          150 SRQVFVCGN--DSKAKDRVMDIARTLGLTPLDQGS  182 (201)
Confidence               233443  578899999999999999999876

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=98.95  E-value=1.5e-09  Score=114.06  Aligned_cols=100  Identities=14%  Similarity=0.238  Sum_probs=74.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  384 (721)
                      +||+|||+|.||.++|..++..|+ +|+++|+++++++.....+.+...            ......+++.+++++++++
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~------------~~~~~~~i~~t~d~~a~~~   70 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASP------------IEGFDVRVTGTNNYADTAN   70 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHH------------HHTCCCCEEEESCGGGGTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHh------------hcCCCeEEEECCCHHHHCC
Confidence            589999999999999999999997 999999999877643221111100            0011235777788888999


Q ss_pred             CCEEEEcc--------------cCChHHHHHHHHHHHhhCCCCeEEEe
Q 004972          385 VDMVIEAV--------------IESVPLKQKIFSELEKACPPHCILAT  418 (721)
Q Consensus       385 aDlVIeav--------------pe~~~~k~~v~~~l~~~~~~~~ii~s  418 (721)
                      ||+||+++              .++..+++++++++.+++ ++++++.
T Consensus        71 aD~Vi~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~  117 (309)
T 1ur5_A           71 SDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLS-PNAVIIM  117 (309)
T ss_dssp             CSEEEECCCC--------CHHHHHHHHHHHHHHHHHGGGC-TTCEEEE
T ss_pred             CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEE
Confidence            99999997              344578888999999987 6666543

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=98.94  E-value=8.2e-09  Score=108.70  Aligned_cols=174  Identities=14%  Similarity=0.079  Sum_probs=112.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhh-hh--cCCCCHHHHHHhhcCceeccCcccc
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGL-VT--RGKLTQDKANNALKMLKGVLDYSEF  382 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~-~~--~g~~~~~~~~~~~~~i~~~~~~~~l  382 (721)
                      +||+|||+|.||+.+|..|+++|++|++|++++  .+...+.      .. +.  .|..       ....+..+++.+.+
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~------g~~~~~~~g~~-------~~~~~~~~~~~~~~   67 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD--YEAIAGN------GLKVFSINGDF-------TLPHVKGYRAPEEI   67 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT--HHHHHHT------CEEEEETTCCE-------EESCCCEESCHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc--HHHHHhC------CCEEEcCCCeE-------EEeeceeecCHHHc
Confidence            589999999999999999999999999999986  2332110      00 00  0100       00123345566667


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH-HHHhcccCCCCcEEEec------CCCCCC---CCCe
Q 004972          383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKTSSQDRIIGAH------FFSPAH---VMPL  452 (721)
Q Consensus       383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i-~~l~~~~~~~~r~ig~h------~~~p~~---~~~l  452 (721)
                      .++|+||.|||  .....++++++.++++++++|++...++.. +.+.+.++. .++++.-      ...|-.   ..+.
T Consensus        68 ~~~D~vilavk--~~~~~~~l~~l~~~l~~~~~iv~l~nGi~~~~~l~~~~~~-~~v~~~~~~~~a~~~~p~~v~~~~~g  144 (312)
T 3hn2_A           68 GPMDLVLVGLK--TFANSRYEELIRPLVEEGTQILTLQNGLGNEEALATLFGA-ERIIGGVAFLCSNRGEPGEVHHLGAG  144 (312)
T ss_dssp             CCCSEEEECCC--GGGGGGHHHHHGGGCCTTCEEEECCSSSSHHHHHHHHTCG-GGEEEEEEEEECCBCSSSEEEECEEE
T ss_pred             CCCCEEEEecC--CCCcHHHHHHHHhhcCCCCEEEEecCCCCcHHHHHHHCCC-CcEEEEEEEeeeEEcCCcEEEECCCC
Confidence            89999999998  666678999999999999999999999874 455555542 3444332      112211   1111


Q ss_pred             eEEe-cCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhH
Q 004972          453 LEIV-RTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFP  497 (721)
Q Consensus       453 vEiv-~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~gfi~nRl~~~  497 (721)
                      .-.+ ..+..+.+..+.+.+++...|....+..|.-+.....++..
T Consensus       145 ~~~ig~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N  190 (312)
T 3hn2_A          145 RIILGEFLPRDTGRIEELAAMFRQAGVDCRTTDDLKRARWEKLVWN  190 (312)
T ss_dssp             EEEEEESSCCCSHHHHHHHHHHHHTTCCEEECSCHHHHHHHHHHHH
T ss_pred             eEEEecCCCCccHHHHHHHHHHHhCCCCcEEChHHHHHHHHHHHHH
Confidence            1122 22334567788899999998888777677655554554433

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=98.90  E-value=1.8e-09  Score=113.25  Aligned_cols=120  Identities=20%  Similarity=0.295  Sum_probs=80.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  383 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  383 (721)
                      +||+|||+|.||.++|..++..|+  +|+++|+++++++.....+        .... .   .. ...++.. +++++++
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l--------~~~~-~---~~-~~~~i~~-~~~~a~~   66 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDI--------AHAA-P---VS-HGTRVWH-GGHSELA   66 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHH--------TTSC-C---TT-SCCEEEE-ECGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhh--------hhhh-h---hc-CCeEEEE-CCHHHhC
Confidence            489999999999999999999999  9999999988765321111        1110 0   00 0012333 5678899


Q ss_pred             CCCEEEEcc--cC------------ChHHHHHHHHHHHhhCCCCeEEE--ecCCCCCHHHHhcccCCCCcEEEe
Q 004972          384 DVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILA--TNTSTIDLNIVGEKTSSQDRIIGA  441 (721)
Q Consensus       384 ~aDlVIeav--pe------------~~~~k~~v~~~l~~~~~~~~ii~--s~ts~~~i~~l~~~~~~~~r~ig~  441 (721)
                      +||+||+++  |.            +..+++++++++.+++ ++++++  ||++......+.+.. .++|++|+
T Consensus        67 ~aDvVIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~~~vi~~tNP~~~~~~~~~~~~-~~~rviG~  138 (304)
T 2v6b_A           67 DAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAA-PDAVLLVTSNPVDLLTDLATQLA-PGQPVIGS  138 (304)
T ss_dssp             TCSEEEECC------------CHHHHHHHHHHHHHHHHHHC-SSSEEEECSSSHHHHHHHHHHHS-CSSCEEEC
T ss_pred             CCCEEEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhC-CCeEEEEecCchHHHHHHHHHhC-ChhcEEeC
Confidence            999999999  42            4557789999999986 566554  454443333333433 67787775

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=98.86  E-value=6.1e-09  Score=109.15  Aligned_cols=108  Identities=20%  Similarity=0.239  Sum_probs=75.0

Q ss_pred             CCCCceeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCC--HHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceecc
Q 004972          301 KPRGVRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN--SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL  377 (721)
Q Consensus       301 ~~~~~~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  377 (721)
                      |.++.+||+|||+|.||.++|..++..|+ +|+++|++  ++.++.....+.+..            .......++..++
T Consensus         4 m~~~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~------------~~~~~~~~i~~t~   71 (315)
T 3tl2_A            4 MTIKRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEAS------------PVQGFDANIIGTS   71 (315)
T ss_dssp             CCCCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHH------------HHHTCCCCEEEES
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhh------------hhccCCCEEEEcC
Confidence            44566799999999999999999999999 99999999  444443221121110            0011124577778


Q ss_pred             CccccCCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCeEEEecCC
Q 004972          378 DYSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTS  421 (721)
Q Consensus       378 ~~~~l~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts  421 (721)
                      +++++++||+||+++.-              +..+.+++.+++.+++ ++++++..|.
T Consensus        72 d~~a~~~aDvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vlvvsN  128 (315)
T 3tl2_A           72 DYADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHS-PNAIIVVLTN  128 (315)
T ss_dssp             CGGGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCS
T ss_pred             CHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEECCC
Confidence            89999999999999731              3346677777888886 4555554443

>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A

Probab=98.83  E-value=8.8e-09  Score=101.40  Aligned_cols=142  Identities=18%  Similarity=0.155  Sum_probs=98.6

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEEC
Q 004972           27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE  106 (721)
Q Consensus        27 al~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav~  106 (721)
                      .++..+.+.+.+.|..++.++.++.|+|.=.    |.|+++..                ...++ +.|..+++||++.+.
T Consensus        35 ~I~~~~a~~i~~~L~~~~~~~~~k~I~l~In----SPGG~v~a----------------~~~I~-~~i~~~~~pV~~~v~   93 (208)
T 2cby_A           35 EVNDEIANRLCAQILLLAAEDASKDISLYIN----SPGGSISA----------------GMAIY-DTMVLAPCDIATYAM   93 (208)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCSSSCEEEEEE----ECCBCHHH----------------HHHHH-HHHHHCSSCEEEEEE
T ss_pred             EECHHHHHHHHHHHHHHHhCCCCCCEEEEEE----CCCCCHHH----------------HHHHH-HHHHhcCCCEEEEEC
Confidence            3788999999999999987776777766421    22232211                22445 668889999999999


Q ss_pred             CcccccchHhhhhcCE--EEeeCCceEeCcccccCcccc--c-----------------ccccccc--CHHHHHHHHHcC
Q 004972          107 GLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPG--T-----------------QRLPRLV--GLSKAIEMMLLS  163 (721)
Q Consensus       107 G~a~GgG~~lalacD~--ria~~~a~~~~pe~~~Gl~P~--~-----------------~~l~r~~--G~~~a~~l~ltg  163 (721)
                      |.|.++|..++++||.  |++.+++.+++....-|. -|  .                 ..+.+..  ......+++..|
T Consensus        94 g~AaS~g~~Ia~agd~~~~~a~p~a~igih~p~~~~-~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~~~~~~  172 (208)
T 2cby_A           94 GMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGV-TGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRD  172 (208)
T ss_dssp             EEEETHHHHHHHTSCTTCEEECTTCEEECCCC-----------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHTT
T ss_pred             cEeHHHHHHHHhCCCcCCEEEcCCcEEEEecccccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHhCC
Confidence            9999999999999998  999999999998765332 12  0                 1122222  334466788899


Q ss_pred             CCcCHHHHHHcCCccEEcC-CchHHHHH
Q 004972          164 KSITSEEGWKLGLIDAVVT-SEELLKVS  190 (721)
Q Consensus       164 ~~~~a~eA~~~Glv~~vv~-~~~l~~~a  190 (721)
                      +.++|+||+++||||++.+ .+++++..
T Consensus       173 ~~~ta~eA~e~GLvD~i~~~~~~ll~~~  200 (208)
T 2cby_A          173 RWFTAAEALEYGFVDHIITRAHVNGEAQ  200 (208)
T ss_dssp             CEEEHHHHHHHTSCSEECSCC-------
T ss_pred             cEEcHHHHHHcCCCcEecCchHHHHHHH
Confidence            9999999999999999984 45555443

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=98.82  E-value=7.1e-09  Score=108.61  Aligned_cols=120  Identities=13%  Similarity=0.235  Sum_probs=81.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCC
Q 004972          307 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  385 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  385 (721)
                      ||+|||+|.||.++|..++..|+ +|+++|+++++++.....+.+.... .  +         ...+++.+++++++++|
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~-~--~---------~~~~i~~t~d~~a~~~a   68 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAE-L--G---------VDIRISGSNSYEDMRGS   68 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHH-H--T---------CCCCEEEESCGGGGTTC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhh-c--C---------CCeEEEECCCHHHhCCC
Confidence            79999999999999999998888 7999999998876432222211100 0  0         01246776788899999


Q ss_pred             CEEEEc--------------ccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhccc----C-CCCcEEEe
Q 004972          386 DMVIEA--------------VIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKT----S-SQDRIIGA  441 (721)
Q Consensus       386 DlVIea--------------vpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~----~-~~~r~ig~  441 (721)
                      |+||++              +..+..+++++.+++.+++ ++++++..|.  |+..+...+    . .+.|++|+
T Consensus        69 D~Vi~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tN--Pv~~~t~~~~k~~~~p~~rviG~  140 (308)
T 2d4a_B           69 DIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYA-KDAIVVITTN--PVDAMTYVMYKKTGFPRERVIGF  140 (308)
T ss_dssp             SEEEECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCS--SHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCC--chHHHHHHHHHhcCCChhhEEEe
Confidence            999999              4456677889999999997 5554443332  444433332    1 24567664

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=98.81  E-value=1.5e-08  Score=107.06  Aligned_cols=171  Identities=15%  Similarity=0.116  Sum_probs=108.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhh-hh---cCCCCHHHHHHhhcCceeccCccc
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGL-VT---RGKLTQDKANNALKMLKGVLDYSE  381 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~-~~---~g~~~~~~~~~~~~~i~~~~~~~~  381 (721)
                      +||+|||+|.||+.+|..|+++|++|++|++++.  +...+.      .+ +.   .+..       ....+..+++.+.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~--~~i~~~------Gl~~~~~~~g~~-------~~~~~~~~~~~~~   67 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSDY--ETVKAK------GIRIRSATLGDY-------TFRPAAVVRSAAE   67 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTTH--HHHHHH------CEEEEETTTCCE-------EECCSCEESCGGG
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCChH--HHHHhC------CcEEeecCCCcE-------EEeeeeeECCHHH
Confidence            5899999999999999999999999999999862  332110      00 00   1100       0012344566655


Q ss_pred             c-CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH-HHHhcccCCCCcEEEe-cCC-----CCCCC---C
Q 004972          382 F-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKTSSQDRIIGA-HFF-----SPAHV---M  450 (721)
Q Consensus       382 l-~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i-~~l~~~~~~~~r~ig~-h~~-----~p~~~---~  450 (721)
                      + +++|+||.|||  .....++++++.++++++++|++...++.. ..+.+.++.. ++++. -++     .|-.+   .
T Consensus        68 ~~~~~DlVilavK--~~~~~~~l~~l~~~l~~~t~Iv~~~nGi~~~~~l~~~~~~~-~vl~g~~~~~a~~~~pg~v~~~~  144 (320)
T 3i83_A           68 LETKPDCTLLCIK--VVEGADRVGLLRDAVAPDTGIVLISNGIDIEPEVAAAFPDN-EVISGLAFIGVTRTAPGEIWHQA  144 (320)
T ss_dssp             CSSCCSEEEECCC--CCTTCCHHHHHTTSCCTTCEEEEECSSSSCSHHHHHHSTTS-CEEEEEEEEEEEEEETTEEEEEE
T ss_pred             cCCCCCEEEEecC--CCChHHHHHHHHhhcCCCCEEEEeCCCCChHHHHHHHCCCC-cEEEEEEEeceEEcCCCEEEECC
Confidence            5 48999999998  444457889999999999999888888864 5566655433 44432 221     22111   1


Q ss_pred             CeeEEe-cCCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhh
Q 004972          451 PLLEIV-RTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRA  494 (721)
Q Consensus       451 ~lvEiv-~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~gfi~nRl  494 (721)
                      +..-.+ .-...+.+..+.+.+++...|..+.+..|.-+.....+
T Consensus       145 ~~~~~ig~~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl  189 (320)
T 3i83_A          145 YGRLMLGNYPGGVSERVKTLAAAFEEAGIDGIATENITTARWQKC  189 (320)
T ss_dssp             EEEEEEEESSSCCCHHHHHHHHHHHHTTSCEEECSCHHHHHHHHH
T ss_pred             CCEEEEecCCCCccHHHHHHHHHHHhCCCCceECHHHHHHHHHHH
Confidence            111112 11233456788899999998888777777555444443

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=98.81  E-value=9.5e-09  Score=108.03  Aligned_cols=106  Identities=20%  Similarity=0.234  Sum_probs=75.3

Q ss_pred             CCceeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccc
Q 004972          303 RGVRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  381 (721)
Q Consensus       303 ~~~~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  381 (721)
                      |+++||+|||+|.||.++|..++..|+ +|+++|+++++++.....+.+.... ..           ...++..++++++
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~-~~-----------~~~~v~~t~d~~a   72 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPV-DG-----------FDAKFTGANDYAA   72 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHH-HT-----------CCCCEEEESSGGG
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhh-cC-----------CCCEEEEeCCHHH
Confidence            346799999999999999999999999 9999999998876433222221110 00           0134666788899


Q ss_pred             cCCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCeEEEecCC
Q 004972          382 FKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTS  421 (721)
Q Consensus       382 l~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts  421 (721)
                      +++||+||.+..-              +..+.+++.+++.+++ ++++++..|.
T Consensus        73 ~~~aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivvtN  125 (324)
T 3gvi_A           73 IEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYA-PEAFVICITN  125 (324)
T ss_dssp             GTTCSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCS
T ss_pred             HCCCCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHC-CCeEEEecCC
Confidence            9999999999731              3456667777888887 5666554443

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=98.80  E-value=6.7e-09  Score=108.88  Aligned_cols=104  Identities=18%  Similarity=0.252  Sum_probs=78.0

Q ss_pred             CceeEEEEcCCCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccc
Q 004972          304 GVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  381 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  381 (721)
                      +.+||+|||+|.||.++|..++..|+  +|+++|++++.++.....+.+...  .  .         ...++..++++++
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~--~--~---------~~~~i~~t~d~~~   86 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSL--F--L---------HTAKIVSGKDYSV   86 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGG--G--S---------CCSEEEEESSSCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhh--c--c---------cCCeEEEcCCHHH
Confidence            56899999999999999999999997  999999999887764433333211  0  0         1135677888988


Q ss_pred             cCCCCEEEEcc--------------cCChHHHHHHHHHHHhhCCCCeEEEecCC
Q 004972          382 FKDVDMVIEAV--------------IESVPLKQKIFSELEKACPPHCILATNTS  421 (721)
Q Consensus       382 l~~aDlVIeav--------------pe~~~~k~~v~~~l~~~~~~~~ii~s~ts  421 (721)
                      +++||+||++.              .++..+++++.+++.+++ ++++++..|.
T Consensus        87 ~~daDiVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~-P~a~ilvvtN  139 (330)
T 3ldh_A           87 SAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHS-PDCLKELHPE  139 (330)
T ss_dssp             CSSCSEEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHC-TTCEEEECSS
T ss_pred             hCCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhC-CCceEEeCCC
Confidence            99999999874              345678888889999995 5565554443

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=98.79  E-value=9.3e-09  Score=108.11  Aligned_cols=127  Identities=18%  Similarity=0.375  Sum_probs=82.5

Q ss_pred             CCceeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccc
Q 004972          303 RGVRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  381 (721)
Q Consensus       303 ~~~~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  381 (721)
                      |+++||+|||+|.||.++|..++..|+ +|+++|+++++++.....+.+...  .. +         ...++..++++++
T Consensus         3 m~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~--~~-~---------~~~~v~~t~d~~a   70 (321)
T 3p7m_A            3 MARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCP--IE-G---------VDFKVRGTNDYKD   70 (321)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHH--HH-T---------CCCCEEEESCGGG
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhh--hc-C---------CCcEEEEcCCHHH
Confidence            346799999999999999999999998 999999999886543222221100  00 0         0124666678899


Q ss_pred             cCCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCeEEEecCCCCC--HHHHhcccC-CCCcEEEec
Q 004972          382 FKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTS-SQDRIIGAH  442 (721)
Q Consensus       382 l~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--i~~l~~~~~-~~~r~ig~h  442 (721)
                      +++||+||.+..-              +..+.+++.+++.+++ |+++++..|....  ...+..... .+.|++|+.
T Consensus        71 ~~~aDvVIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vivvtNPvd~~t~~~~k~sg~p~~rviG~~  147 (321)
T 3p7m_A           71 LENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNC-PNAFVICITNPLDIMVNMLQKFSGVPDNKIVGMA  147 (321)
T ss_dssp             GTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHHHHHHHHHCCCGGGEEEEC
T ss_pred             HCCCCEEEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHC-CCcEEEEecCchHHHHHHHHHhcCCCHHHEEeec
Confidence            9999999999631              3456777778888887 5565554333222  122222223 236777744

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=98.79  E-value=1.7e-08  Score=106.10  Aligned_cols=122  Identities=18%  Similarity=0.259  Sum_probs=80.6

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCC--CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCcee-ccCccc
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDYSE  381 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~  381 (721)
                      |+||+|||+|.||.++|..|+.+|  ++|++||+++++++.....+.+...   ..+           ..+.. ++++++
T Consensus         1 m~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~---~~~-----------~~~~~~~~d~~~   66 (309)
T 1hyh_A            1 ARKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMA---NLE-----------AHGNIVINDWAA   66 (309)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGG---GSS-----------SCCEEEESCGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhh---hcC-----------CCeEEEeCCHHH
Confidence            368999999999999999999999  7999999999887765432221110   000           12232 456688


Q ss_pred             cCCCCEEEEcccCCh------------------HHHHHHHHHHHhhCCCCeEEEecCCCCCH-HHHhccc--CCCCcEEE
Q 004972          382 FKDVDMVIEAVIESV------------------PLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKT--SSQDRIIG  440 (721)
Q Consensus       382 l~~aDlVIeavpe~~------------------~~k~~v~~~l~~~~~~~~ii~s~ts~~~i-~~l~~~~--~~~~r~ig  440 (721)
                      +++||+||+|++...                  .+++++++++.++++ +++++..|.+..+ +.+....  -.+.|++|
T Consensus        67 ~~~aDvViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~-~~~ii~~tNp~~~~~~~~~~~~~~~~~rvig  145 (309)
T 1hyh_A           67 LADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGF-HGVLVVISNPVDVITALFQHVTGFPAHKVIG  145 (309)
T ss_dssp             GTTCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTC-CSEEEECSSSHHHHHHHHHHHHCCCGGGEEE
T ss_pred             hCCCCEEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CcEEEEEcCcHHHHHHHHHHhcCCCHHHEee
Confidence            899999999998533                  246788888888775 5555443333222 2233221  24567777


Q ss_pred             e
Q 004972          441 A  441 (721)
Q Consensus       441 ~  441 (721)
                      +
T Consensus       146 ~  146 (309)
T 1hyh_A          146 T  146 (309)
T ss_dssp             C
T ss_pred             c
Confidence            6

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=98.75  E-value=3.7e-08  Score=103.44  Aligned_cols=102  Identities=18%  Similarity=0.143  Sum_probs=70.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHC--CCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972          306 RKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  383 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  383 (721)
                      +||+|||+|.||.++|..|+..  |++|++||+++++++.....+.+...   .         .....++..+++++.++
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~---~---------~~~~~~i~~t~d~~~l~   68 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGP---V---------GLFDTKVTGSNDYADTA   68 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHH---H---------HTCCCEEEEESCGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhh---c---------ccCCcEEEECCCHHHHC
Confidence            4899999999999999999985  78999999999887743211111000   0         00113467778887799


Q ss_pred             CCCEEEEcccCC--------------hHHHHHHHHHHHhhCCCCeEEEecC
Q 004972          384 DVDMVIEAVIES--------------VPLKQKIFSELEKACPPHCILATNT  420 (721)
Q Consensus       384 ~aDlVIeavpe~--------------~~~k~~v~~~l~~~~~~~~ii~s~t  420 (721)
                      +||+||+|+|..              ..+.+++.+.+.+++ ++++++..|
T Consensus        69 ~aDvViiav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~viv~t  118 (310)
T 1guz_A           69 NSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHS-KNPIIIVVS  118 (310)
T ss_dssp             TCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-SSCEEEECC
T ss_pred             CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEEc
Confidence            999999999632              245567777888886 455444333

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=98.75  E-value=5.7e-09  Score=111.27  Aligned_cols=117  Identities=14%  Similarity=-0.000  Sum_probs=82.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHH-HCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972          306 RKVAVIGGGLMGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  383 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  383 (721)
                      ++|+|||+|.||.++|..+. ..|++|++||++++..+...+           .             .+...+++ +.++
T Consensus       164 ~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~-----------~-------------g~~~~~~l~ell~  219 (348)
T 2w2k_A          164 HVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKA-----------L-------------GAERVDSLEELAR  219 (348)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHH-----------H-------------TCEECSSHHHHHH
T ss_pred             CEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhh-----------c-------------CcEEeCCHHHHhc
Confidence            58999999999999999999 899999999998765443210           0             12233344 4578


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccCCC-CcEEEecCCCC
Q 004972          384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQ-DRIIGAHFFSP  446 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~~~-~r~ig~h~~~p  446 (721)
                      +||+|++++|.+.+.+.-+.+++.+.++++++|++.+++  .....+.+.+... -...|+++|.+
T Consensus       220 ~aDvVil~vp~~~~t~~li~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~  285 (348)
T 2w2k_A          220 RSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEF  285 (348)
T ss_dssp             HCSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTT
T ss_pred             cCCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCCC
Confidence            999999999987765544445666778999988754444  3345666666432 22367898874

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=98.74  E-value=4.4e-09  Score=111.47  Aligned_cols=117  Identities=12%  Similarity=0.050  Sum_probs=81.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|+|||+|.||..+|..++..|++|++||++++..+...           +.             .+... ++ +.+++
T Consensus       156 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-----------~~-------------g~~~~-~l~e~l~~  210 (330)
T 2gcg_A          156 STVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAA-----------EF-------------QAEFV-STPELAAQ  210 (330)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHH-----------TT-------------TCEEC-CHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHHH-----------hc-------------CceeC-CHHHHHhh
Confidence            5899999999999999999999999999999876443321           11             12223 44 45789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccC-CCCcEEEecCCCCC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS-SQDRIIGAHFFSPA  447 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~-~~~r~ig~h~~~p~  447 (721)
                      ||+||+++|.+.+.+.-+-+++.+.++++++|++.+++  .....+.+.+. ..-...++++|.|.
T Consensus       211 aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~e  276 (330)
T 2gcg_A          211 SDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPE  276 (330)
T ss_dssp             CSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSS
T ss_pred             CCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHcCCccEEEeCCCCCC
Confidence            99999999977654433335566778999988754444  33355665553 23345788987654

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=98.73  E-value=3.9e-08  Score=103.82  Aligned_cols=123  Identities=27%  Similarity=0.375  Sum_probs=81.8

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcccc
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  382 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l  382 (721)
                      ++||+|||+|.||+.+|..|+.+|+  +|+++|++++.++.....+.+.+   .-.+          ..++..+++++++
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~---~~~~----------~~~v~~~~~~~~~   73 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGS---SFYP----------TVSIDGSDDPEIC   73 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTG---GGST----------TCEEEEESCGGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhh---hhcC----------CeEEEeCCCHHHh
Confidence            4699999999999999999999999  99999999877652111111111   0000          1234555567788


Q ss_pred             CCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHH-Hhcc-cC-CCCcEEEe
Q 004972          383 KDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTSTIDLNI-VGEK-TS-SQDRIIGA  441 (721)
Q Consensus       383 ~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~-l~~~-~~-~~~r~ig~  441 (721)
                      ++||+||+++..              +..+++++++++.++ .++++|++.+.++.+.+ +... .. .+.+++|.
T Consensus        74 ~~aD~Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~~~Np~~~~~~~~~~~~~~~~~~vig~  148 (319)
T 1lld_A           74 RDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITNPVDIATHVAQKLTGLPENQIFGS  148 (319)
T ss_dssp             TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHHHHHHHHHHHHTCCTTSEEEC
T ss_pred             CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEecCchHHHHHHHHHhcCCCHHHEeec
Confidence            999999999931              235667888888887 57777777666655433 2221 12 34567654

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=98.71  E-value=5.4e-09  Score=112.02  Aligned_cols=110  Identities=22%  Similarity=0.166  Sum_probs=81.1

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCC--------ceEEEeCCHHHHHH-HHHHHHHH--HHhhhhcCCCCHHHHHHhhcCc
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNI--------YVVLKEVNSEYLLK-GIKTIEAN--VRGLVTRGKLTQDKANNALKML  373 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~--------~V~l~d~~~~~~~~-~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~i  373 (721)
                      ..||+|||+|.||+++|..|+++|+        +|++|.++++.... ..+.++..  -..++..-.+        ..++
T Consensus        34 p~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~L--------p~~i  105 (391)
T 4fgw_A           34 PFKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITL--------PDNL  105 (391)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCC--------CSSE
T ss_pred             CCeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcC--------CCCc
Confidence            3589999999999999999999875        49999998763111 11111100  0001111112        2568


Q ss_pred             eeccCc-cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCC
Q 004972          374 KGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID  424 (721)
Q Consensus       374 ~~~~~~-~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~  424 (721)
                      .+++|+ +++++||+||.+||  .+..+.+++++.+++++++++++.+.++.
T Consensus       106 ~~t~dl~~al~~ad~ii~avP--s~~~r~~l~~l~~~~~~~~~iv~~~KGie  155 (391)
T 4fgw_A          106 VANPDLIDSVKDVDIIVFNIP--HQFLPRICSQLKGHVDSHVRAISCLKGFE  155 (391)
T ss_dssp             EEESCHHHHHTTCSEEEECSC--GGGHHHHHHHHTTTSCTTCEEEECCCSCE
T ss_pred             EEeCCHHHHHhcCCEEEEECC--hhhhHHHHHHhccccCCCceeEEeccccc
Confidence            889998 67899999999999  99999999999999999999998887764

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=98.71  E-value=1.3e-08  Score=106.49  Aligned_cols=93  Identities=18%  Similarity=0.199  Sum_probs=67.7

Q ss_pred             cChHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHH------HHHHHHHHhhC
Q 004972          615 VTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVY------TSLKKWSQLYG  688 (721)
Q Consensus       615 ~~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~------~~~~~~~~~~~  688 (721)
                      -++++|.||++.+++|||+++++||++ |++|||.++..|+|+|...-|||+++|+.|.+...      ..++.+...++
T Consensus       189 d~pGFi~NRl~~~~~~EA~~lv~eGva-s~edID~~~~~g~g~~~a~mGPf~~~Dl~G~~~~~~~~~~~~~~~~~~~~~~  267 (319)
T 3ado_A          189 EIDGFVLNRLQYAIISEAWRLVEEGIV-SPSDLDLVMSDGLGMRYAFIGPLETMHLNAEGMLSYCDRYSEGMKRVLKSFG  267 (319)
T ss_dssp             CCTTTTHHHHHHHHHHHHHHHHHTTSS-CHHHHHHHHHTTHHHHHTTSCHHHHHHHTTTSHHHHHHHHHHHHHHHHHTCC
T ss_pred             CCCCEeHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCCCCcchhhhhhhcCccHHHHHHHhhHhHHHHHHHcC
Confidence            368999999999999999999999999 99999999999999872223999999999975433      22333444444


Q ss_pred             CCCCCCHHHHHHHHcCCCCcCC
Q 004972          689 NFFKPSRFLEERATKGIPLSAP  710 (721)
Q Consensus       689 ~~~~p~~~l~~~~~~g~~f~~~  710 (721)
                      ....-...+.+  +.++|||.+
T Consensus       268 ~~p~~~~~~~~--k~~~g~~~~  287 (319)
T 3ado_A          268 SIPEFSGATVE--KVNQAMCKK  287 (319)
T ss_dssp             CCCCCCHHHHH--HHHHHHHHH
T ss_pred             cccccchHHHH--HHHHHHhhc
Confidence            32111222332  446778876

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=98.68  E-value=6.7e-08  Score=106.42  Aligned_cols=123  Identities=16%  Similarity=0.175  Sum_probs=80.8

Q ss_pred             ceeEEEEcCCCC--cHHHHHHHHHC----CCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccC
Q 004972          305 VRKVAVIGGGLM--GSGIATAHILN----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD  378 (721)
Q Consensus       305 ~~kI~VIG~G~m--G~~iA~~la~~----G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  378 (721)
                      .+||+|||+|.|  |.++|..++..    |++|++||+++++++.+.......+    .....        ..+++.++|
T Consensus         3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l----~~~~~--------~~~I~~ttD   70 (480)
T 1obb_A            3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYV----EEVGA--------DLKFEKTMN   70 (480)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHH----HHTTC--------CCEEEEESC
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHh----ccCCC--------CcEEEEECC
Confidence            359999999997  46567778754    8899999999999887654332222    11111        246888888


Q ss_pred             c-cccCCCCEEEEcccC-----------------------C-----------------hHHHHHHHHHHHhhCCCCeEEE
Q 004972          379 Y-SEFKDVDMVIEAVIE-----------------------S-----------------VPLKQKIFSELEKACPPHCILA  417 (721)
Q Consensus       379 ~-~~l~~aDlVIeavpe-----------------------~-----------------~~~k~~v~~~l~~~~~~~~ii~  417 (721)
                      + +++++||+||++++-                       +                 ..+..++.+++.+++ |+++++
T Consensus        71 ~~eal~dAD~VIiaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~-P~A~ii  149 (480)
T 1obb_A           71 LDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLS-PKAWYL  149 (480)
T ss_dssp             HHHHHTTCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHC-TTCEEE
T ss_pred             HHHHhCCCCEEEECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHC-CCeEEE
Confidence            8 789999999999952                       1                 146677778888887 556665


Q ss_pred             ecCCCCCH-HHHhcccCCCCcEEEe
Q 004972          418 TNTSTIDL-NIVGEKTSSQDRIIGA  441 (721)
Q Consensus       418 s~ts~~~i-~~l~~~~~~~~r~ig~  441 (721)
                      ..|....+ ++..... .+.|++|+
T Consensus       150 ~~TNPvdi~t~~~~k~-p~~rviG~  173 (480)
T 1obb_A          150 QAANPIFEGTTLVTRT-VPIKAVGF  173 (480)
T ss_dssp             ECSSCHHHHHHHHHHH-SCSEEEEE
T ss_pred             EeCCcHHHHHHHHHHC-CCCcEEec
Confidence            44444332 2322222 34466663

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=98.68  E-value=5.4e-08  Score=100.93  Aligned_cols=103  Identities=17%  Similarity=0.273  Sum_probs=71.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  383 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  383 (721)
                      +||+|||+|.||.++|..|+..|+  +|++||++++.++.....+.+....+   .         ...++..++|+++++
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~---~---------~~~~i~~t~d~~a~~   68 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGI---D---------KYPKIVGGADYSLLK   68 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTT---T---------CCCEEEEESCGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhc---C---------CCCEEEEeCCHHHhC
Confidence            489999999999999999999998  99999999998763222222211111   0         012466677788999


Q ss_pred             CCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCeEEEecCC
Q 004972          384 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTS  421 (721)
Q Consensus       384 ~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts  421 (721)
                      +||+||.+..-              +..+.+++.+++.+++ |+++++..|.
T Consensus        69 ~aDiVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivvsN  119 (294)
T 1oju_A           69 GSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILVVTN  119 (294)
T ss_dssp             TCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTS-TTCEEEECSS
T ss_pred             CCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeCC
Confidence            99999998742              2245556666777775 5666654443

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=98.68  E-value=1.7e-08  Score=106.21  Aligned_cols=122  Identities=21%  Similarity=0.302  Sum_probs=78.2

Q ss_pred             CceeEEEEcCCCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccc
Q 004972          304 GVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  381 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  381 (721)
                      +++||+|||+|.||.++|..++..|.  +|+++|++++.++.....+.+.   ....+.         ..++. ++++++
T Consensus         5 ~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~---~~~~~~---------~~~i~-~~~~~a   71 (316)
T 1ldn_A            5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHG---KVFAPK---------PVDIW-HGDYDD   71 (316)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHH---TTSSSS---------CCEEE-ECCGGG
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHH---hhhcCC---------CeEEE-cCcHHH
Confidence            45799999999999999999998875  8999999988555322222111   000000         01233 345688


Q ss_pred             cCCCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhccc----C-CCCcEEEe
Q 004972          382 FKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKT----S-SQDRIIGA  441 (721)
Q Consensus       382 l~~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~----~-~~~r~ig~  441 (721)
                      +++||+||++++              ++..+++++.+++.++++ +++++..|  .|+..+...+    . .+.|++|+
T Consensus        72 l~~aDvViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p-~a~~iv~t--NPv~~~~~~~~~~s~~p~~rviG~  147 (316)
T 1ldn_A           72 CRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGF-QGLFLVAT--NPVDILTYATWKFSGLPHERVIGS  147 (316)
T ss_dssp             TTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTC-CSEEEECS--SSHHHHHHHHHHHHTCCGGGEEEC
T ss_pred             hCCCCEEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHCC-CCEEEEeC--CchHHHHHHHHHHhCCCHHHEEec
Confidence            999999999953              344788899999999974 55443333  2444333332    1 24566664

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=98.67  E-value=5.2e-09  Score=111.06  Aligned_cols=116  Identities=16%  Similarity=0.057  Sum_probs=81.0

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  383 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  383 (721)
                      -++|+|||+|.||.++|..++..|++|++||++++. +.+.           ..|             +.. +++ +.++
T Consensus       150 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~-----------~~g-------------~~~-~~l~~~l~  203 (334)
T 2dbq_A          150 GKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKE-EVER-----------ELN-------------AEF-KPLEDLLR  203 (334)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHH-----------HHC-------------CEE-CCHHHHHH
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcch-hhHh-----------hcC-------------ccc-CCHHHHHh
Confidence            368999999999999999999999999999999876 3221           001             222 244 4578


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH--HHhcccC-CCCcEEEecCCCC
Q 004972          384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSP  446 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~--~l~~~~~-~~~r~ig~h~~~p  446 (721)
                      +||+|++++|.+.+.+.-+.+++.+.++++++|++.+.+..+.  .+.+.+. ..-...|+|+|+|
T Consensus       204 ~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~  269 (334)
T 2dbq_A          204 ESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEE  269 (334)
T ss_dssp             HCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSS
T ss_pred             hCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEecCCCC
Confidence            9999999999877554433356667789999887555443333  4555543 2334477998873

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=98.66  E-value=2.8e-08  Score=108.59  Aligned_cols=107  Identities=16%  Similarity=0.113  Sum_probs=76.4

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHH-CCCceEEEe---CCHHHHHHHHHHHHHHHHhhhhcC------CCCHHHHHHhhcCce
Q 004972          305 VRKVAVIGGGLMGSGIATAHIL-NNIYVVLKE---VNSEYLLKGIKTIEANVRGLVTRG------KLTQDKANNALKMLK  374 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~-~G~~V~l~d---~~~~~~~~~~~~~~~~~~~~~~~g------~~~~~~~~~~~~~i~  374 (721)
                      ++||+|||+|.||+.+|..|++ +|++|++||   ++++.++.+.+          +.+      ... .+......++.
T Consensus         2 ~mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~----------~~g~~~~~~~~~-~~~~~~~~~~~   70 (404)
T 3c7a_A            2 TVKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALG----------ADELTVIVNEKD-GTQTEVKSRPK   70 (404)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHT----------TSCEEEEEECSS-SCEEEEEECCS
T ss_pred             CceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHh----------hccceeeeecCC-Cccceeeccce
Confidence            3689999999999999999988 599999999   87777665321          111      000 00000012333


Q ss_pred             -eccCc-cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCC
Q 004972          375 -GVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID  424 (721)
Q Consensus       375 -~~~~~-~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~  424 (721)
                       .++++ +.+++||+||+|||  .....++++++.++++++++|++++++..
T Consensus        71 ~~~~~~~~a~~~aD~Vilav~--~~~~~~v~~~l~~~l~~~~ivv~~~~~~G  120 (404)
T 3c7a_A           71 VITKDPEIAISGADVVILTVP--AFAHEGYFQAMAPYVQDSALIVGLPSQAG  120 (404)
T ss_dssp             EEESCHHHHHTTCSEEEECSC--GGGHHHHHHHHTTTCCTTCEEEETTCCTT
T ss_pred             EEeCCHHHHhCCCCEEEEeCc--hHHHHHHHHHHHhhCCCCcEEEEcCCCcc
Confidence             55666 45789999999999  55578999999999999999998665554

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=98.66  E-value=5e-09  Score=110.76  Aligned_cols=111  Identities=14%  Similarity=0.051  Sum_probs=79.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|+|||+|.||.++|..+...|++|++||++++..+                +             ....+++ +.+++
T Consensus       165 ~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~~~----------------g-------------~~~~~~l~ell~~  215 (333)
T 3ba1_A          165 KRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNT----------------N-------------YTYYGSVVELASN  215 (333)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCTTC----------------C-------------SEEESCHHHHHHT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchhcc----------------C-------------ceecCCHHHHHhc
Confidence            5799999999999999999999999999999875311                1             1223445 45789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH--HHHhcccC-CCCcEEEecCCC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS-SQDRIIGAHFFS  445 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i--~~l~~~~~-~~~r~ig~h~~~  445 (721)
                      ||+|++++|.+.+.+.-+-++..+.++++++|++.+++..+  ..+.+.+. ...+..++++|.
T Consensus       216 aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i~ga~lDv~~  279 (333)
T 3ba1_A          216 SDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFE  279 (333)
T ss_dssp             CSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSSCEEEESCCT
T ss_pred             CCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcCCCeEEEEecCC
Confidence            99999999976654433324455667889988765554333  45666554 334677888886

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=98.65  E-value=6.5e-08  Score=103.73  Aligned_cols=105  Identities=15%  Similarity=0.096  Sum_probs=73.9

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCc-eeccCc-ccc
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKML-KGVLDY-SEF  382 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i-~~~~~~-~~l  382 (721)
                      ++||+|||+|.||+.+|..|+++|++|++||++++.++...+..    ...+......      ...++ ..++++ +.+
T Consensus         4 ~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~~------~~~~~~~~~~~~~~~~   73 (359)
T 1bg6_A            4 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRG----AIIAEGPGLA------GTAHPDLLTSDIGLAV   73 (359)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHT----SEEEESSSCC------EEECCSEEESCHHHHH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcC----CeEEeccccc------cccccceecCCHHHHH
Confidence            46899999999999999999999999999999998877653210    0000000000      00122 245555 447


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCC
Q 004972          383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  421 (721)
Q Consensus       383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts  421 (721)
                      +++|+||+|+|..  ...++++++.+.++++++|++..+
T Consensus        74 ~~~D~vi~~v~~~--~~~~~~~~l~~~l~~~~~vv~~~~  110 (359)
T 1bg6_A           74 KDADVILIVVPAI--HHASIAANIASYISEGQLIILNPG  110 (359)
T ss_dssp             TTCSEEEECSCGG--GHHHHHHHHGGGCCTTCEEEESSC
T ss_pred             hcCCEEEEeCCch--HHHHHHHHHHHhCCCCCEEEEcCC
Confidence            8999999999944  347888999999999997776533

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=98.60  E-value=1.5e-08  Score=107.28  Aligned_cols=113  Identities=18%  Similarity=0.114  Sum_probs=77.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|+|||+|.||.++|..+...|++|++||++++. +.+.           +.|             +... ++ +.+++
T Consensus       147 ~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~-~~~~-----------~~g-------------~~~~-~l~e~l~~  200 (333)
T 2d0i_A          147 KKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKV-NVEK-----------ELK-------------ARYM-DIDELLEK  200 (333)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCH-HHHH-----------HHT-------------EEEC-CHHHHHHH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcch-hhhh-----------hcC-------------ceec-CHHHHHhh
Confidence            58999999999999999999999999999999875 2211           001             2222 44 45789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH--HHhcccCC-CCcEEEecCCC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTSS-QDRIIGAHFFS  445 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~--~l~~~~~~-~~r~ig~h~~~  445 (721)
                      ||+|++++|.+.+.+.-+-+++.+.++++ ++++.+.+..+.  .+.+.+.. .-...|+|+|.
T Consensus       201 aDiVil~vp~~~~t~~~i~~~~~~~mk~g-ilin~srg~~vd~~aL~~aL~~~~i~gaglDv~~  263 (333)
T 2d0i_A          201 SDIVILALPLTRDTYHIINEERVKKLEGK-YLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFE  263 (333)
T ss_dssp             CSEEEECCCCCTTTTTSBCHHHHHHTBTC-EEEECSCGGGBCHHHHHHHHHTTCBCEEEESCCS
T ss_pred             CCEEEEcCCCChHHHHHhCHHHHhhCCCC-EEEECCCCcccCHHHHHHHHHcCCceEEEecCCC
Confidence            99999999977655444434555678888 776444443332  34455443 33568899987

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=98.58  E-value=1.8e-07  Score=103.09  Aligned_cols=123  Identities=15%  Similarity=0.172  Sum_probs=80.5

Q ss_pred             eeEEEEcCCCC-cHHHHHHHHHC-----CCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc
Q 004972          306 RKVAVIGGGLM-GSGIATAHILN-----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  379 (721)
Q Consensus       306 ~kI~VIG~G~m-G~~iA~~la~~-----G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  379 (721)
                      +||+|||+|.+ |.++|..|+..     +.+|++||+++++++...+.....+.. .  +         ...++..++|+
T Consensus        29 ~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~-~--~---------~~~~I~~t~D~   96 (472)
T 1u8x_X           29 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIRE-K--A---------PDIEFAATTDP   96 (472)
T ss_dssp             EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHH-H--C---------TTSEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhcc-C--C---------CCCEEEEECCH
Confidence            59999999998 55688888887     668999999999887754322211111 0  1         11357778887


Q ss_pred             -cccCCCCEEEEcccCCh----------------------------------HHHHHHHHHHHhhCCCCeEEEecCCCCC
Q 004972          380 -SEFKDVDMVIEAVIESV----------------------------------PLKQKIFSELEKACPPHCILATNTSTID  424 (721)
Q Consensus       380 -~~l~~aDlVIeavpe~~----------------------------------~~k~~v~~~l~~~~~~~~ii~s~ts~~~  424 (721)
                       +++++||+||.++|-..                                  .+..++.+++.+++ |+++++..|....
T Consensus        97 ~eal~~AD~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~-P~A~ii~~TNPvd  175 (472)
T 1u8x_X           97 EEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYS-PDAWMLNYSNPAA  175 (472)
T ss_dssp             HHHHSSCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSCHH
T ss_pred             HHHHcCCCEEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHC-CCeEEEEeCCcHH
Confidence             78999999999997411                                  24667778888887 5566664444433


Q ss_pred             H-HHHhcccCCCCcEEEe
Q 004972          425 L-NIVGEKTSSQDRIIGA  441 (721)
Q Consensus       425 i-~~l~~~~~~~~r~ig~  441 (721)
                      + ++.......+.|++|+
T Consensus       176 i~T~~~~k~~p~~rViG~  193 (472)
T 1u8x_X          176 IVAEATRRLRPNSKILNI  193 (472)
T ss_dssp             HHHHHHHHHSTTCCEEEC
T ss_pred             HHHHHHHHhCCCCCEEEe
Confidence            3 2333222334477763

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=98.56  E-value=2.4e-07  Score=97.19  Aligned_cols=115  Identities=18%  Similarity=0.090  Sum_probs=77.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhh-cCCCCHHHHHHhhcCceeccCccccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT-RGKLTQDKANNALKMLKGVLDYSEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~i~~~~~~~~l~~  384 (721)
                      +||+|||+|.||+.+|..|+ +|++|++|+++++.++...+.   .+  .+. .+.       .....+..  +.+.+.+
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~---G~--~~~~~~~-------~~~~~~~~--~~~~~~~   67 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSE---GI--RLYKGGE-------EFRADCSA--DTSINSD   67 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHH---CE--EEEETTE-------EEEECCEE--ESSCCSC
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhC---Cc--eEecCCC-------eecccccc--cccccCC
Confidence            58999999999999999999 999999999999876654321   00  000 000       00001111  1245678


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHH-HhcccCCCCcEEE
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI-VGEKTSSQDRIIG  440 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~-l~~~~~~~~r~ig  440 (721)
                      +|+||.||+  .....++++++.+. ++++ |++...++...+ +.+.++ ..++++
T Consensus        68 ~D~vilavK--~~~~~~~l~~l~~~-~~~~-ivs~~nGi~~~e~l~~~~~-~~~vl~  119 (307)
T 3ego_A           68 FDLLVVTVK--QHQLQSVFSSLERI-GKTN-ILFLQNGMGHIHDLKDWHV-GHSIYV  119 (307)
T ss_dssp             CSEEEECCC--GGGHHHHHHHTTSS-CCCE-EEECCSSSHHHHHHHTCCC-SCEEEE
T ss_pred             CCEEEEEeC--HHHHHHHHHHhhcC-CCCe-EEEecCCccHHHHHHHhCC-CCcEEE
Confidence            999999998  66777888888765 6777 778888888764 444433 344443

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=98.53  E-value=1e-07  Score=104.03  Aligned_cols=102  Identities=20%  Similarity=0.253  Sum_probs=72.8

Q ss_pred             CceeEEEEcCCCC--cHHHHHHHHH----CCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceecc
Q 004972          304 GVRKVAVIGGGLM--GSGIATAHIL----NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL  377 (721)
Q Consensus       304 ~~~kI~VIG~G~m--G~~iA~~la~----~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  377 (721)
                      +.+||+|||+|.|  |.+++..++.    .| +|++||+++++++.... +.   +. ...          ...+++.|+
T Consensus         4 ~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~-~~---~~-l~~----------~~~~I~~Tt   67 (450)
T 3fef_A            4 DQIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEV-IG---NH-SGN----------GRWRYEAVS   67 (450)
T ss_dssp             CCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHH-HH---TT-STT----------SCEEEEEES
T ss_pred             CCCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHH-HH---HH-Hhc----------cCCeEEEEC
Confidence            3469999999997  5799988886    57 99999999998876532 11   11 111          224688899


Q ss_pred             Cc-cccCCCCEEEEcccC------------------------------------ChHHHHHHHHHHHhhCCCCeEEEecC
Q 004972          378 DY-SEFKDVDMVIEAVIE------------------------------------SVPLKQKIFSELEKACPPHCILATNT  420 (721)
Q Consensus       378 ~~-~~l~~aDlVIeavpe------------------------------------~~~~k~~v~~~l~~~~~~~~ii~s~t  420 (721)
                      |+ +++++||+||++++.                                    +..+..++.+++.+++ |+++++..|
T Consensus        68 D~~eAl~dADfVI~airvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~-p~a~~i~~t  146 (450)
T 3fef_A           68 TLKKALSAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYA-PESWVINYT  146 (450)
T ss_dssp             SHHHHHTTCSEEEECCCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHC-TTSEEEECC
T ss_pred             CHHHHhcCCCEEEeccccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHC-CCeEEEEec
Confidence            98 678999999999952                                    1234667777888886 566665444


Q ss_pred             CC
Q 004972          421 ST  422 (721)
Q Consensus       421 s~  422 (721)
                      ..
T Consensus       147 NP  148 (450)
T 3fef_A          147 NP  148 (450)
T ss_dssp             SS
T ss_pred             Cc
Confidence            43

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=98.53  E-value=1.8e-07  Score=97.85  Aligned_cols=103  Identities=17%  Similarity=0.200  Sum_probs=69.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  383 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  383 (721)
                      +||+|||+|.||.++|..++..|+  +|+++|+++++++.....+.+..... ..           ..++..++++++++
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~-~~-----------~~~v~~~~~~~a~~   68 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIH-GF-----------DTRVTGTNDYGPTE   68 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHH-TC-----------CCEEEEESSSGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhcccccc-CC-----------CcEEEECCCHHHhC
Confidence            489999999999999999999987  99999999987664322222211100 00           01344456789999


Q ss_pred             CCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCeEEEecCC
Q 004972          384 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTS  421 (721)
Q Consensus       384 ~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts  421 (721)
                      +||+||.+..-              +..+.+++.+.+.+++ |+++++..|.
T Consensus        69 ~aDvVii~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vivvtN  119 (314)
T 3nep_X           69 DSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGS-PDSTIIVVAN  119 (314)
T ss_dssp             TCSEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTTC-TTCEEEECCS
T ss_pred             CCCEEEECCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEecCC
Confidence            99999998742              2234555566677775 5566654443

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=98.52  E-value=2.4e-08  Score=104.20  Aligned_cols=164  Identities=12%  Similarity=0.033  Sum_probs=106.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcccc-CC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF-KD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l-~~  384 (721)
                      +||+|||+|.||+.+|..|+++|++|++|+++++.++.           ....|...        ..+. .+..+.+ .+
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~-----------~~~~g~~~--------~~~~-~~~~~~~~~~   62 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITY-----------YTVPHAPA--------QDIV-VKGYEDVTNT   62 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEE-----------ESSTTSCC--------EEEE-EEEGGGCCSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEE-----------EecCCeec--------ccee-cCchHhcCCC
Confidence            58999999999999999999999999999999654221           00112110        1121 1223444 88


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEe------cCCCCCCCC-CeeEEec
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGA------HFFSPAHVM-PLLEIVR  457 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~------h~~~p~~~~-~lvEiv~  457 (721)
                      +|+||.||+  .....++++++.++++++++|++...++...+.   ++ ..++++.      ....|-..- ..-.+..
T Consensus        63 ~D~vilavk--~~~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~---~~-~~~v~~g~~~~~a~~~~pg~v~~~~~~~~~  136 (294)
T 3g17_A           63 FDVIIIAVK--THQLDAVIPHLTYLAHEDTLIILAQNGYGQLEH---IP-FKNVCQAVVYISGQKKGDVVTHFRDYQLRI  136 (294)
T ss_dssp             EEEEEECSC--GGGHHHHGGGHHHHEEEEEEEEECCSSCCCGGG---CC-CSCEEECEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCEEEEeCC--ccCHHHHHHHHHHhhCCCCEEEEeccCcccHhh---CC-CCcEEEEEEEEEEEEcCCCEEEECCCEEec
Confidence            999999998  777888999999999999999998888877654   32 2344332      111221110 0011111


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCeeEEEcCCCchhhhhhhhHH
Q 004972          458 TERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPY  498 (721)
Q Consensus       458 ~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~gfi~nRl~~~~  498 (721)
                      +   +.+..+.+.+++..-|-...+..|..+.....++...
T Consensus       137 ~---~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~  174 (294)
T 3g17_A          137 Q---DNALTRQFRDLVQDSQIDIVLEANIQQAIWYKLLVNL  174 (294)
T ss_dssp             E---CSHHHHHHHHHTTTSSCEEEEESSHHHHHHHHHHHHH
T ss_pred             C---ccHHHHHHHHHHHhCCCceEEChHHHHHHHHHHHHHH
Confidence            1   3456777888888878777777776665555554433

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=98.52  E-value=3.1e-08  Score=102.42  Aligned_cols=125  Identities=10%  Similarity=-0.022  Sum_probs=86.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|+|||+|.||.++|..+...|++|++||++++..+                             .....+++ +.+++
T Consensus       123 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~-----------------------------~~~~~~~l~ell~~  173 (290)
T 3gvx_A          123 KALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQN-----------------------------VDVISESPADLFRQ  173 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTT-----------------------------CSEECSSHHHHHHH
T ss_pred             chheeeccCchhHHHHHHHHhhCcEEEEEeccccccc-----------------------------cccccCChHHHhhc
Confidence            5899999999999999999999999999999875411                             02233345 55789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCC--CHHHHhcccC-CCCcEEEecCC-----CCCCCCCeeEEe
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTS-SQDRIIGAHFF-----SPAHVMPLLEIV  456 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--~i~~l~~~~~-~~~r~ig~h~~-----~p~~~~~lvEiv  456 (721)
                      ||+|+.++|.+.+...-+-++..+.++++++|+..+.+-  ....+.+.+. ..-...++..|     +|.+..+.+-++
T Consensus       174 aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~pL~~~~nvilT  253 (290)
T 3gvx_A          174 SDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPEITETNLRNAILS  253 (290)
T ss_dssp             CSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTSCCSCCCSSEEEC
T ss_pred             cCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhhccceEEeeccccCCcccchhhhhhhhcC
Confidence            999999999666654444466777889999987655443  3345555543 23344555544     444555667777


Q ss_pred             cCC
Q 004972          457 RTE  459 (721)
Q Consensus       457 ~~~  459 (721)
                      |+-
T Consensus       254 PHi  256 (290)
T 3gvx_A          254 PHV  256 (290)
T ss_dssp             CSC
T ss_pred             ccc
Confidence            763

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=98.51  E-value=6.1e-07  Score=98.34  Aligned_cols=197  Identities=16%  Similarity=0.188  Sum_probs=145.0

Q ss_pred             CCcEEEEEe-cCcEEEEEeCCCC---C-----------CCCCHHHHHHHHHHHHHHh-cCCCceEEEEEeCCCCCcCCCC
Q 004972            3 APRVTMEVG-NDGVAIITLINPP---V-----------NALAIPIVAGLKDKFEEAT-SRDDVKAIVLTGNGGRFSGGFD   66 (721)
Q Consensus         3 ~~~v~~~~~-~~~v~~i~l~~p~---~-----------Nal~~~~~~~l~~~l~~~~-~~~~v~~vVltg~g~~F~aG~D   66 (721)
                      |+.+...++ ..+++.++...|.   .           +.....|-.||.+++..+. ++.++...++...|+.      
T Consensus       265 y~~~~~ai~ra~r~a~~~~~g~~~a~~~~ld~i~aa~~~~~~l~~~~el~~All~l~~ne~~~~~~~~~t~g~~------  338 (556)
T 2w3p_A          265 YKTLDVTIDRAKRIATFTAKAPQTEPPASIDAIVAAGANWWPLKFAREFDDAILSMRTNELAVGTWVFRTEGDA------  338 (556)
T ss_dssp             ETTEEEEEETTTTEEEEEEECCSSCCCCSHHHHHHHGGGSHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEESCH------
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHhhhcchhhhhhhHHHHHHHhhhhccHHHhHhhhhccCCH------
Confidence            344555554 5668889987762   1           4445678899977776665 6788999998776532      


Q ss_pred             chhhh-------hccCCCcccccchHHHHHHHHHHhhCCCcEEEEE-CCcccccc-hHhhhhcCEEEeeC-------Cce
Q 004972           67 INVFQ-------KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV-EGLALGGG-LELAMGCHARIAAP-------KTQ  130 (721)
Q Consensus        67 l~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav-~G~a~GgG-~~lalacD~ria~~-------~a~  130 (721)
                       ..+.       ...+.+-+.+...++.+.+ .++.....-++|.| .|.|+.|- +||+++||..++-+       .+.
T Consensus       339 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~r~d~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~  416 (556)
T 2w3p_A          339 -RHLLAADASLMQHKDHWFVRETIGLLRRTL-ARIDVSSRSLFALIEPGSCFAGTFAELAFAADRTYMAALPANEDEEPA  416 (556)
T ss_dssp             -HHHHHHHHHHHHTTTSHHHHHHHHHHHHHH-HHHHTCSSEEEEEECTTCCEEGGGHHHHHTSSEEEECCCTTCTTTSCC
T ss_pred             -HHHhhhHHHHHhccchHHHHHHHHHHHHHH-HHhcccchhheeeecCCcchHHHHHHHHHHhhhhhhhcCCCCCCCCce
Confidence             2221       1122222344455566666 56778888999999 79998886 49999999999962       488


Q ss_pred             EeCcccccCcccc----ccccccccCHHHHHHHH--HcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchh
Q 004972          131 LGLPELTLGVIPG----TQRLPRLVGLSKAIEMM--LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPW  204 (721)
Q Consensus       131 ~~~pe~~~Gl~P~----~~~l~r~~G~~~a~~l~--ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~  204 (721)
                      +.+.+.++|.+|-    +..-.|..|.....+.+  ..|+++++++|.++|||+...++-+++++++-..++-++.||.+
T Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  496 (556)
T 2w3p_A          417 ITLSEVNFGLYPMVTHQSRLARRFYEETEPLDAVRSRIGQAIKPVEAERLGLVTASPDDIDWADEIRIALEERAAMSPDA  496 (556)
T ss_dssp             EECCGGGGTTSCCTTSSCHHHHHTTTCHHHHHHHHTTTTSCBCHHHHHHTTSSSBCCCTTTHHHHHHHHHHHHHHSCHHH
T ss_pred             eEeeccccCcccCCCchhHHHHHhcCCcchHHHHHHHhCCCCCHHHHHhcCCeecCcccCChHHHHHHHHHHHhccCcch
Confidence            9999999999996    33334556665555433  46999999999999999999999999999999999999999876


Q ss_pred             hhh
Q 004972          205 IRS  207 (721)
Q Consensus       205 ~~~  207 (721)
                      +.-
T Consensus       497 ~~~  499 (556)
T 2w3p_A          497 LTG  499 (556)
T ss_dssp             HHH
T ss_pred             hcc
Confidence            543

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=98.49  E-value=2.8e-07  Score=96.96  Aligned_cols=104  Identities=27%  Similarity=0.336  Sum_probs=71.1

Q ss_pred             CCceeEEEEcCCCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCce-eccCc
Q 004972          303 RGVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK-GVLDY  379 (721)
Q Consensus       303 ~~~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~-~~~~~  379 (721)
                      +..+||+|||+|.||.++|..++..|+  +|+++|+++++++.....+.+... ...             ..+. .++++
T Consensus         3 ~~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~-~~~-------------~~v~i~~~~~   68 (326)
T 3pqe_A            3 KHVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKA-FAP-------------QPVKTSYGTY   68 (326)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGG-GSS-------------SCCEEEEECG
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccc-ccc-------------CCeEEEeCcH
Confidence            446799999999999999999999997  899999999887754333332211 000             1122 24567


Q ss_pred             cccCCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCeEEEecCC
Q 004972          380 SEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTS  421 (721)
Q Consensus       380 ~~l~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts  421 (721)
                      +++++||+||.++..              +..+.+++.+.+.++++ +++++..|.
T Consensus        69 ~a~~~aDvVvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p-~a~vlvvtN  123 (326)
T 3pqe_A           69 EDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGF-DGIFLVATN  123 (326)
T ss_dssp             GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTC-CSEEEECSS
T ss_pred             HHhCCCCEEEEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcC-CeEEEEcCC
Confidence            889999999999842              22345566667777764 566654443

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=98.46  E-value=2.8e-07  Score=96.97  Aligned_cols=105  Identities=19%  Similarity=0.251  Sum_probs=73.4

Q ss_pred             CCceeEEEEcCCCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcc
Q 004972          303 RGVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS  380 (721)
Q Consensus       303 ~~~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  380 (721)
                      .+.+||+|||+|.||.++|..++..|+  +|+++|+++++++.....+.+...  .  .         ....+..+++++
T Consensus        17 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~--~--~---------~~~~i~~~~d~~   83 (331)
T 4aj2_A           17 VPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSL--F--L---------KTPKIVSSKDYS   83 (331)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGG--G--C---------SCCEEEECSSGG
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhh--c--c---------CCCeEEEcCCHH
Confidence            346799999999999999999999998  899999998876654333322110  0  0         012355577888


Q ss_pred             ccCCCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCeEEEecCC
Q 004972          381 EFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTS  421 (721)
Q Consensus       381 ~l~~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~ts  421 (721)
                      ++++||+||.+.-              .+..+.+++.+.+.+++ |+++++..|.
T Consensus        84 ~~~~aDiVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~-p~a~vlvvtN  137 (331)
T 4aj2_A           84 VTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYS-PQCKLLIVSN  137 (331)
T ss_dssp             GGTTEEEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECSS
T ss_pred             HhCCCCEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecC
Confidence            8999999998862              13346667777788885 5555554443

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=98.44  E-value=1.5e-07  Score=105.92  Aligned_cols=149  Identities=13%  Similarity=0.094  Sum_probs=95.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|+|||+|.||+++|..+...|++|++||++... +.+.           +.|             +... ++ +.+++
T Consensus       143 ~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~-----------~~g-------------~~~~-~l~e~~~~  196 (529)
T 1ygy_A          143 KTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP-ARAA-----------QLG-------------IELL-SLDDLLAR  196 (529)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCH-HHHH-----------HHT-------------CEEC-CHHHHHHH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hcC-------------cEEc-CHHHHHhc
Confidence            68999999999999999999999999999998642 2211           111             1222 34 55789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHH--HhcccCCC-C-----cEEEecCC--CCCCCCCeeE
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI--VGEKTSSQ-D-----RIIGAHFF--SPAHVMPLLE  454 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~--l~~~~~~~-~-----r~ig~h~~--~p~~~~~lvE  454 (721)
                      ||+|+.|+|.+.+...-+-+++.+.+++++++++.+.+-.+.+  +.+.+... -     .|++.||.  +|-+..+.+-
T Consensus       197 aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i~ga~lDv~~~eP~~~~~L~~~~~vi  276 (529)
T 1ygy_A          197 ADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVV  276 (529)
T ss_dssp             CSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTTEE
T ss_pred             CCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcCCccEEEEeeccCCCCCCchHHhCCCEE
Confidence            9999999996544333222336677899999987666544443  43444321 1     23333442  2223345566


Q ss_pred             EecCCC-CCHHHHHH-----HHHHHHHcCCee
Q 004972          455 IVRTER-TSAQVILD-----LMTVGKIIKKVP  480 (721)
Q Consensus       455 iv~~~~-t~~e~~~~-----~~~l~~~lG~~~  480 (721)
                      ++|+.. +++++.+.     +..+.+.++..+
T Consensus       277 lTPh~~~~t~ea~~~~~~~~~~~l~~~l~~~~  308 (529)
T 1ygy_A          277 VTPHLGASTAEAQDRAGTDVAESVRLALAGEF  308 (529)
T ss_dssp             ECSSCSSCBHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             EccccCCCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence            888877 67777665     666666666544

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=98.44  E-value=2.6e-07  Score=97.28  Aligned_cols=139  Identities=12%  Similarity=0.057  Sum_probs=86.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeC-CHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEV-NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  383 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  383 (721)
                      ++|+|||+|.||.++|..+...|++|++||+ +++.. .+.           +.|             +...+++ +.++
T Consensus       147 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~~-----------~~g-------------~~~~~~l~ell~  201 (320)
T 1gdh_A          147 KTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSS-DEA-----------SYQ-------------ATFHDSLDSLLS  201 (320)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHH-HHH-----------HHT-------------CEECSSHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcChh-hhh-----------hcC-------------cEEcCCHHHHHh
Confidence            5899999999999999999999999999999 87652 111           011             2223344 5578


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccCCC-CcEEEecCC--CC-----CCCCCee
Q 004972          384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQ-DRIIGAHFF--SP-----AHVMPLL  453 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~~~-~r~ig~h~~--~p-----~~~~~lv  453 (721)
                      +||+|+.++|.+.+...-+-++..+.++++++|++.+++  +....+.+.+... -.-.++.+|  .|     -+..+.+
T Consensus       202 ~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~g~i~gA~lDv~~~eP~~~~~L~~~~nv  281 (320)
T 1gdh_A          202 VSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNT  281 (320)
T ss_dssp             HCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTTSCCTTGGGCTTE
T ss_pred             hCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCCCChhhhCCCE
Confidence            999999999966553332224456778999998866655  3334555554321 122234444  22     2334456


Q ss_pred             EEecCCCC-CHHHHHHH
Q 004972          454 EIVRTERT-SAQVILDL  469 (721)
Q Consensus       454 Eiv~~~~t-~~e~~~~~  469 (721)
                      -++|+... +.++.+.+
T Consensus       282 iltPH~~~~t~~~~~~~  298 (320)
T 1gdh_A          282 FLFPHIGSAATQAREDM  298 (320)
T ss_dssp             EECSSCTTCBHHHHHHH
T ss_pred             EECCcCCcCcHHHHHHH
Confidence            67776543 34444333

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=98.38  E-value=1.2e-06  Score=90.59  Aligned_cols=104  Identities=17%  Similarity=0.281  Sum_probs=71.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  383 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  383 (721)
                      +||+|||+|.+|.++|..++.++.  +++++|++++.++.-...+.+.... ..           ....+..++++++++
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~-~~-----------~~~~i~~~~d~~~~~   68 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAG-ID-----------KYPKIVGGADYSLLK   68 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGG-GT-----------CCCEEEEESCGGGGT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhccccc-CC-----------CCCeEecCCCHHHhC
Confidence            589999999999999999998876  8999999987765433222221110 00           012355677889999


Q ss_pred             CCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972          384 DVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTST  422 (721)
Q Consensus       384 ~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~ts~  422 (721)
                      +||+||.+.-              .|..+.+++.+++.++++. ++++..|..
T Consensus        69 ~aDvVvitAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~-aivlvvsNP  120 (294)
T 2x0j_A           69 GSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPE-SKILVVTNP  120 (294)
T ss_dssp             TCSEEEECCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTSTT-CEEEECSSS
T ss_pred             CCCEEEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCc-eEEEEecCc
Confidence            9999998762              1455667777778887654 555544444

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=98.37  E-value=2.3e-07  Score=97.49  Aligned_cols=128  Identities=10%  Similarity=0.050  Sum_probs=85.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|||||+|.||.++|..+...|++|++||++++..+..                          .......++ +.+++
T Consensus       138 ktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--------------------------~~~~~~~~l~ell~~  191 (324)
T 3evt_A          138 QQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHF--------------------------HETVAFTATADALAT  191 (324)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCCTTC--------------------------SEEEEGGGCHHHHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchhHhH--------------------------hhccccCCHHHHHhh
Confidence            589999999999999999999999999999986542110                          011112344 55789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccC-CCCcEEEecCCC--------CCCCCCee
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS-SQDRIIGAHFFS--------PAHVMPLL  453 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~-~~~r~ig~h~~~--------p~~~~~lv  453 (721)
                      ||+|+.++|-+.+...-+-++....++++++|+..+.+  +....+.+.+. ..-...++..|.        |-+..+.|
T Consensus       192 aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nv  271 (324)
T 3evt_A          192 ANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDV  271 (324)
T ss_dssp             CSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHTTSCSEEEESSCSSSSCCTTCGGGGCSSE
T ss_pred             CCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHhCCceEEEeCCCCCCCCCCCChhhcCCCE
Confidence            99999999977665544446667778999988754444  33345555553 223344555443        22334556


Q ss_pred             EEecCC
Q 004972          454 EIVRTE  459 (721)
Q Consensus       454 Eiv~~~  459 (721)
                      -++|+-
T Consensus       272 ilTPHi  277 (324)
T 3evt_A          272 LITPHI  277 (324)
T ss_dssp             EECCSC
T ss_pred             EEcCcc
Confidence            677753

>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A

Probab=98.35  E-value=2.9e-06  Score=82.56  Aligned_cols=136  Identities=22%  Similarity=0.237  Sum_probs=98.5

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEEC
Q 004972           27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE  106 (721)
Q Consensus        27 al~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav~  106 (721)
                      .++..+.+.+.+.|..++.++..+.|+|.=.    |.|+++.                ....++ +.|...++||++.+.
T Consensus        35 ~I~~~~a~~i~~~L~~l~~~~~~~~I~l~In----SPGG~v~----------------~~~~I~-~~i~~~~~~V~t~~~   93 (203)
T 3qwd_A           35 QIDDNVANSIVSQLLFLQAQDSEKDIYLYIN----SPGGSVT----------------AGFAIY-DTIQHIKPDVQTICI   93 (203)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCSSSCEEEEEE----ECCBCHH----------------HHHHHH-HHHHHSSSCEEEEEE
T ss_pred             EECHHHHHHHHHHHHHHHhcCCCCCEEEEEe----CCCCCHH----------------HHHHHH-HHHHHhcCCcEEEEe
Confidence            4889999999999999987766666666321    2233321                122444 667889999999999


Q ss_pred             CcccccchHhhhhcC--EEEeeCCceEeCcccccCcccc--c------cc-----------cccc--cCHHHHHHHHHcC
Q 004972          107 GLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPG--T------QR-----------LPRL--VGLSKAIEMMLLS  163 (721)
Q Consensus       107 G~a~GgG~~lalacD--~ria~~~a~~~~pe~~~Gl~P~--~------~~-----------l~r~--~G~~~a~~l~ltg  163 (721)
                      |.|.++|.-++++||  .|++.+++.|.+....-| .-|  +      ..           +.+.  .......+++-..
T Consensus        94 G~AaSag~~i~~ag~~g~r~~~p~a~imiHqP~~~-~~G~a~di~~~a~~l~~~~~~~~~~~a~~tG~~~e~i~~~~~~d  172 (203)
T 3qwd_A           94 GMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGG-AQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRD  172 (203)
T ss_dssp             EEEETHHHHHHHTSCTTCEEECTTCEEECCCCSSS-TTTTSCHHHHHHHHHTTHHHHHHHHHHHHHCCCHHHHHHHHTSC
T ss_pred             eeehhHHHHHHHcCCcCeEEEcCCceEEEeccccc-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhcC
Confidence            999999999999999  699999999998655433 222  0      00           1111  2344555666677


Q ss_pred             CCcCHHHHHHcCCccEEcCCc
Q 004972          164 KSITSEEGWKLGLIDAVVTSE  184 (721)
Q Consensus       164 ~~~~a~eA~~~Glv~~vv~~~  184 (721)
                      ..++|+||++.||||+|+...
T Consensus       173 ~~lta~EA~e~GliD~I~~~~  193 (203)
T 3qwd_A          173 NFLTAEEAKEYGLIDEVMVPE  193 (203)
T ss_dssp             CCEEHHHHHHHTSCSEECCCC
T ss_pred             ceecHHHHHHcCCcCEecCCc
Confidence            789999999999999999654

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=98.35  E-value=3.7e-07  Score=96.44  Aligned_cols=110  Identities=16%  Similarity=0.102  Sum_probs=66.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|||||+|.||.++|..+...|++|++||++++..                .             ......++ +.+++
T Consensus       172 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~----------------~-------------~~~~~~sl~ell~~  222 (340)
T 4dgs_A          172 KRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLSG----------------V-------------DWIAHQSPVDLARD  222 (340)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCTT----------------S-------------CCEECSSHHHHHHT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCcccc----------------c-------------CceecCCHHHHHhc
Confidence            589999999999999999999999999999987530                0             11223344 56789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH--HHhcccCC-CCcEEEecCC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTSS-QDRIIGAHFF  444 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~--~l~~~~~~-~~r~ig~h~~  444 (721)
                      ||+|+.++|.+.+...-+-++..+.++++++|+..+.+-.+.  .+.+.+.. .-...++..|
T Consensus       223 aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDVf  285 (340)
T 4dgs_A          223 SDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVF  285 (340)
T ss_dssp             CSEEEECC----------CHHHHHHTTTTCEEEECSCC--------------CCSSEEEESCC
T ss_pred             CCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCceEEEeCCc
Confidence            999999999766655555467777889999987655553333  44444432 2234555554

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=98.33  E-value=4.4e-07  Score=96.35  Aligned_cols=104  Identities=11%  Similarity=0.062  Sum_probs=73.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|+|||+|.||..+|..+...|++|+.||+++...+.+..           .             .+...+++ +.+++
T Consensus       165 ktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~-----------~-------------g~~~~~~l~ell~~  220 (351)
T 3jtm_A          165 KTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKE-----------T-------------GAKFVEDLNEMLPK  220 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHH-----------H-------------CCEECSCHHHHGGG
T ss_pred             CEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHh-----------C-------------CCeEcCCHHHHHhc
Confidence            58999999999999999999999999999998643332210           0             12333445 56789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS  433 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~  433 (721)
                      ||+|+.++|-..+...-+-++..+.++++++|+..+.+  +....+.+.+.
T Consensus       221 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~  271 (351)
T 3jtm_A          221 CDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVE  271 (351)
T ss_dssp             CSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             CCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCchhhCHHHHHHHHH
Confidence            99999999966555444445666778999998754444  33345555543

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=98.33  E-value=6.3e-07  Score=93.71  Aligned_cols=136  Identities=16%  Similarity=0.090  Sum_probs=85.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|+|||+|.||.++|..+...|++|++||++++. +.+.           +.|             +... ++ +.+++
T Consensus       143 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~-~~~~-----------~~g-------------~~~~-~l~ell~~  196 (307)
T 1wwk_A          143 KTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNE-ERAK-----------EVN-------------GKFV-DLETLLKE  196 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHH-----------HTT-------------CEEC-CHHHHHHH
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCCh-hhHh-----------hcC-------------cccc-CHHHHHhh
Confidence            58999999999999999999999999999998865 2211           111             1222 34 45688


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH--HHHhcccC-CCCcEEEecCCC--C------CCCCCee
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS-SQDRIIGAHFFS--P------AHVMPLL  453 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i--~~l~~~~~-~~~r~ig~h~~~--p------~~~~~lv  453 (721)
                      ||+|+.++|.+.+...-+-.+..+.++++++++..+++-.+  ..+.+.+. ..-.-.++.+|.  |      -+..+.+
T Consensus       197 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~L~~~~nv  276 (307)
T 1wwk_A          197 SDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNV  276 (307)
T ss_dssp             CSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTE
T ss_pred             CCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEecCCCCCCCCCChHHhCCCE
Confidence            99999999966654332224455678999988765554333  34444443 222334444443  2      2334556


Q ss_pred             EEecCCCC-CHHHHH
Q 004972          454 EIVRTERT-SAQVIL  467 (721)
Q Consensus       454 Eiv~~~~t-~~e~~~  467 (721)
                      -++|+... +.+...
T Consensus       277 iltPh~~~~t~~~~~  291 (307)
T 1wwk_A          277 VLTPHIGASTVEAQE  291 (307)
T ss_dssp             EECSSCTTCBHHHHH
T ss_pred             EECCccccCcHHHHH
Confidence            67776543 344433

>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1

Probab=98.33  E-value=3e-06  Score=83.44  Aligned_cols=135  Identities=14%  Similarity=0.105  Sum_probs=93.8

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEEC
Q 004972           27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE  106 (721)
Q Consensus        27 al~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav~  106 (721)
                      .++..+.+.+.+.|..++.++. +.|+|.=.    |.|+++.                ....++ +.|...++|+++.+.
T Consensus        47 ~I~~~~a~~i~~~L~~l~~~~~-k~I~l~IN----SPGGsv~----------------a~~~I~-~~i~~~~~pV~t~v~  104 (215)
T 2f6i_A           47 EINKKTADELISQLLYLDNINH-NDIKIYIN----SPGGSIN----------------EGLAIL-DIFNYIKSDIQTISF  104 (215)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCC-SCEEEEEE----ECCBCHH----------------HHHHHH-HHHHHSSSCEEEEEE
T ss_pred             EECHHHHHHHHHHHHHHHhCCC-CcEEEEEE----CCCCCHH----------------HHHHHH-HHHHhcCCCEEEEEe
Confidence            3778888999999998876555 66666421    2233321                122444 667889999999999


Q ss_pred             CcccccchHhhhhcCE--EEeeCCceEeCcccccCccc---ccc---------------cccc--ccCHHHHHHHHHcCC
Q 004972          107 GLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIP---GTQ---------------RLPR--LVGLSKAIEMMLLSK  164 (721)
Q Consensus       107 G~a~GgG~~lalacD~--ria~~~a~~~~pe~~~Gl~P---~~~---------------~l~r--~~G~~~a~~l~ltg~  164 (721)
                      |.|..+|.-++++||.  |+|.+++.+++.....|...   +..               .+.+  -.......+++-.+.
T Consensus       105 g~AAS~g~~Ia~agd~g~i~a~p~s~i~ih~p~~~~~G~~~di~~~~~el~~~~~~i~~~ya~~~g~~~e~i~~~~~~~~  184 (215)
T 2f6i_A          105 GLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSDRDY  184 (215)
T ss_dssp             EEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC--------CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHTTC
T ss_pred             eEhHhHHHHHHHcCCcccEEEcCCCEEEEeccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHhCCe
Confidence            9999999999999999  99999999998765433211   100               0011  123445555555566


Q ss_pred             CcCHHHHHHcCCccEEcCC
Q 004972          165 SITSEEGWKLGLIDAVVTS  183 (721)
Q Consensus       165 ~~~a~eA~~~Glv~~vv~~  183 (721)
                      .++|+||+++||||++.+.
T Consensus       185 ~lta~eA~e~GLiD~I~~~  203 (215)
T 2f6i_A          185 YMNALEAKQYGIIDEVIET  203 (215)
T ss_dssp             EECHHHHHHHTSCSEECCC
T ss_pred             ecCHHHHHHCCCCCEecCC
Confidence            7899999999999999854

>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A

Probab=98.31  E-value=1.1e-06  Score=85.37  Aligned_cols=136  Identities=15%  Similarity=0.123  Sum_probs=96.4

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEEC
Q 004972           27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE  106 (721)
Q Consensus        27 al~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav~  106 (721)
                      .++..+.+.+.+.|..++.+++.+.|+|.=.    |.|+++.                ....++ +.|..+++|+++.+.
T Consensus        34 ~I~~~~a~~i~~~L~~l~~~~~~~~I~l~In----SPGG~v~----------------a~~~I~-~~i~~~~~pV~~~v~   92 (193)
T 1yg6_A           34 QVEDHMANLIVAQMLFLEAENPEKDIYLYIN----SPGGVIT----------------AGMSIY-DTMQFIKPDVSTICM   92 (193)
T ss_dssp             SBCHHHHHHHHHHHHHHHHHCSSSCEEEEEE----ECCBCHH----------------HHHHHH-HHHHHSSSCEEEEEE
T ss_pred             EEcHHHHHHHHHHHHHHHhcCCCCCEEEEEE----CcCCCHH----------------HHHHHH-HHHHhcCCCEEEEEe
Confidence            3788899999999999987766777777421    2233321                122444 667889999999999


Q ss_pred             CcccccchHhhhhcCE--EEeeCCceEeCcccccCccc---cc---------------cccccc--cCHHHHHHHHHcCC
Q 004972          107 GLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIP---GT---------------QRLPRL--VGLSKAIEMMLLSK  164 (721)
Q Consensus       107 G~a~GgG~~lalacD~--ria~~~a~~~~pe~~~Gl~P---~~---------------~~l~r~--~G~~~a~~l~ltg~  164 (721)
                      |.|..+|.-++++||.  |++.+++.++......|...   +.               ..+.+.  .......+++-.+.
T Consensus        93 g~AaS~g~~Ia~ag~~~~r~a~p~s~i~ih~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~~~~~~~  172 (193)
T 1yg6_A           93 GQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDR  172 (193)
T ss_dssp             EEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTSSCE
T ss_pred             eeHHHHHHHHHHCCCcCcEEEecCcEEEEEeccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCe
Confidence            9999999999999999  99999999988665433211   00               011122  23344445554566


Q ss_pred             CcCHHHHHHcCCccEEcCC
Q 004972          165 SITSEEGWKLGLIDAVVTS  183 (721)
Q Consensus       165 ~~~a~eA~~~Glv~~vv~~  183 (721)
                      .++++||+++||||++..+
T Consensus       173 ~~ta~eA~~~GliD~i~~~  191 (193)
T 1yg6_A          173 FLSAPEAVEYGLVDSILTH  191 (193)
T ss_dssp             EEEHHHHHHHTSSSEECCC
T ss_pred             EEcHHHHHHcCCCCEecCC
Confidence            7899999999999999864

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=98.29  E-value=7.1e-07  Score=94.37  Aligned_cols=96  Identities=15%  Similarity=0.196  Sum_probs=70.2

Q ss_pred             CceeEEEEcC-CCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-
Q 004972          304 GVRKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  379 (721)
Q Consensus       304 ~~~kI~VIG~-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-  379 (721)
                      ..+||+|||+ |.+|+++|..++..|.  +|+++|+++++++.....+.+.   .     ..       ..++..++++ 
T Consensus         7 ~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~---~-----~~-------~~~i~~t~d~~   71 (343)
T 3fi9_A            7 TEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHC---G-----FE-------GLNLTFTSDIK   71 (343)
T ss_dssp             CSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHH---C-----CT-------TCCCEEESCHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhC---c-----CC-------CCceEEcCCHH
Confidence            3579999998 9999999999999985  8999999998766543333221   0     10       1256667776 


Q ss_pred             cccCCCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCe
Q 004972          380 SEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHC  414 (721)
Q Consensus       380 ~~l~~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~  414 (721)
                      +++++||+||.+.-              .+..+.+++.+++.+++++..
T Consensus        72 ~al~dADvVvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~  120 (343)
T 3fi9_A           72 EALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCK  120 (343)
T ss_dssp             HHHTTEEEEEECCC-------CHHHHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred             HHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcE
Confidence            67999999999862              234566777778888886554

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=98.28  E-value=7.9e-07  Score=92.69  Aligned_cols=132  Identities=11%  Similarity=0.011  Sum_probs=86.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|+|||+|.||.++|..+...|++|++||++++  +.               +             .....++ +.+++
T Consensus       125 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~--~~---------------~-------------~~~~~~l~ell~~  174 (303)
T 1qp8_A          125 EKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK--EG---------------P-------------WRFTNSLEEALRE  174 (303)
T ss_dssp             CEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC--CS---------------S-------------SCCBSCSHHHHTT
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc--cc---------------C-------------cccCCCHHHHHhh
Confidence            5899999999999999999999999999999865  10               1             0112334 55789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH--HHHhcccC-CCCcEEEecCC---CCC------CCCCe
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS-SQDRIIGAHFF---SPA------HVMPL  452 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i--~~l~~~~~-~~~r~ig~h~~---~p~------~~~~l  452 (721)
                      ||+|+.++|.+.+...-+-++..+.++++++++..+++-.+  ..+.+.+. ..-.-.|...|   .|.      +..+.
T Consensus       175 aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~g~i~gA~lDv~~~~ep~~~~~~L~~~~n  254 (303)
T 1qp8_A          175 ARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPN  254 (303)
T ss_dssp             CSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTCCGGGHHHHTSTT
T ss_pred             CCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCcccCHHHHHHHHHhCCceEEEeccCCCCCCCCCCChhhcCCC
Confidence            99999999976554333324566778999998765554333  24555443 22334566666   332      22355


Q ss_pred             eEEecCCCC---CHHHHH
Q 004972          453 LEIVRTERT---SAQVIL  467 (721)
Q Consensus       453 vEiv~~~~t---~~e~~~  467 (721)
                      +-++|+...   +.++.+
T Consensus       255 viltPH~~~~~~t~e~~~  272 (303)
T 1qp8_A          255 VVATPWVAGGYGNERVWR  272 (303)
T ss_dssp             EEECCSCSSSSSCHHHHH
T ss_pred             EEECCCcCCCCCCHHHHH
Confidence            667776543   455433

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=98.28  E-value=1.1e-06  Score=93.29  Aligned_cols=136  Identities=10%  Similarity=0.023  Sum_probs=86.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|||||+|.||.++|..+...|++|++||++... +.+           .+.|             +...+++ +.+++
T Consensus       161 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~-----------~~~g-------------~~~~~~l~ell~~  215 (352)
T 3gg9_A          161 QTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSK-ERA-----------RADG-------------FAVAESKDALFEQ  215 (352)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHH-HHH-----------HHTT-------------CEECSSHHHHHHH
T ss_pred             CEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCH-HHH-----------HhcC-------------ceEeCCHHHHHhh
Confidence            58999999999999999999999999999998633 211           1111             2334455 55789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCC--HHHHhcccC-CCCcEEEecCCC--------CCCCCCee
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTS-SQDRIIGAHFFS--------PAHVMPLL  453 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--i~~l~~~~~-~~~r~ig~h~~~--------p~~~~~lv  453 (721)
                      ||+|+.++|-+.+...-+-.+..+.++++++|+..+.+-.  ...+.+.+. ..-...++..|.        |-+..+.+
T Consensus       216 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nv  295 (352)
T 3gg9_A          216 SDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENC  295 (352)
T ss_dssp             CSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHHHTSSSEEEECCCSSSCCCSCCGGGGCTTE
T ss_pred             CCEEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECCCchhhcHHHHHHHHHhCCccEEEecccCCCCCCCCChhhcCCCE
Confidence            9999999997666554444566677899999875444322  234444443 222334444332        22334556


Q ss_pred             EEecCCC-CCHHHH
Q 004972          454 EIVRTER-TSAQVI  466 (721)
Q Consensus       454 Eiv~~~~-t~~e~~  466 (721)
                      -++|+-. .+.++.
T Consensus       296 ilTPHia~~t~e~~  309 (352)
T 3gg9_A          296 ICTPHIGYVERESY  309 (352)
T ss_dssp             EECCSCTTCBHHHH
T ss_pred             EECCCCCCCCHHHH
Confidence            6777543 244433

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=98.28  E-value=1e-06  Score=93.16  Aligned_cols=102  Identities=15%  Similarity=0.047  Sum_probs=72.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|||||.|.||.++|..+...|++|+.||+++...+..             .             .....+++ +.+++
T Consensus       174 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~-------------~-------------g~~~~~~l~ell~~  227 (345)
T 4g2n_A          174 RRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALE-------------E-------------GAIYHDTLDSLLGA  227 (345)
T ss_dssp             CEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHH-------------T-------------TCEECSSHHHHHHT
T ss_pred             CEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhh-------------c-------------CCeEeCCHHHHHhh
Confidence            589999999999999999999999999999986432211             0             12233455 55789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS  433 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~  433 (721)
                      ||+|+.++|-+.+...-+-++....++++++|+..+.+  +....+.+.+.
T Consensus       228 sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~  278 (345)
T 4g2n_A          228 SDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALR  278 (345)
T ss_dssp             CSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             CCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHH
Confidence            99999999977665544445666778999998754444  33345555543

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=98.27  E-value=3e-06  Score=92.95  Aligned_cols=123  Identities=20%  Similarity=0.242  Sum_probs=79.7

Q ss_pred             eeEEEEcCCCC-cHHHHHHHHHC-----CCceEEEeCCH--HHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceecc
Q 004972          306 RKVAVIGGGLM-GSGIATAHILN-----NIYVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL  377 (721)
Q Consensus       306 ~kI~VIG~G~m-G~~iA~~la~~-----G~~V~l~d~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  377 (721)
                      +||+|||+|.+ |.+++..|+..     +.+|++||+++  ++++...+.....++   ..+ .        ..++..++
T Consensus         8 ~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~---~~~-~--------~~~i~~t~   75 (450)
T 1s6y_A            8 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVE---KAG-V--------PIEIHLTL   75 (450)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHH---HTT-C--------CCEEEEES
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHh---hcC-C--------CcEEEEeC
Confidence            59999999999 88888888874     56899999999  887774332221111   111 0        13577778


Q ss_pred             Cc-cccCCCCEEEEcccCCh----------------------------------HHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972          378 DY-SEFKDVDMVIEAVIESV----------------------------------PLKQKIFSELEKACPPHCILATNTST  422 (721)
Q Consensus       378 ~~-~~l~~aDlVIeavpe~~----------------------------------~~k~~v~~~l~~~~~~~~ii~s~ts~  422 (721)
                      |+ +++++||+||.+++-..                                  .+..++.+++.+++ |+++++..|..
T Consensus        76 D~~eal~gAD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~-P~a~ii~~tNP  154 (450)
T 1s6y_A           76 DRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELC-PDAWLINFTNP  154 (450)
T ss_dssp             CHHHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSS
T ss_pred             CHHHHhCCCCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHC-CCeEEEEeCCc
Confidence            87 78999999999998311                                  34667778888887 55666544443


Q ss_pred             CCH-HHHhcccCCCCcEEEe
Q 004972          423 IDL-NIVGEKTSSQDRIIGA  441 (721)
Q Consensus       423 ~~i-~~l~~~~~~~~r~ig~  441 (721)
                      ..+ ++.........|++|+
T Consensus       155 vdivT~a~~k~~p~~rViG~  174 (450)
T 1s6y_A          155 AGMVTEAVLRYTKQEKVVGL  174 (450)
T ss_dssp             HHHHHHHHHHHCCCCCEEEC
T ss_pred             HHHHHHHHHHhCCCCCEEEe
Confidence            332 3333223333466663

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=98.27  E-value=5.2e-07  Score=94.64  Aligned_cols=128  Identities=14%  Similarity=0.101  Sum_probs=82.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|||||+|.||.++|..+...|++|++||++++..+..                          .......++ +.+++
T Consensus       141 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--------------------------~~~~~~~~l~ell~~  194 (324)
T 3hg7_A          141 RTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGF--------------------------DQVYQLPALNKMLAQ  194 (324)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCTTC--------------------------SEEECGGGHHHHHHT
T ss_pred             ceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChHHhhhh--------------------------hcccccCCHHHHHhh
Confidence            589999999999999999999999999999987431110                          011112344 55789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCC--HHHHhcccCC-CCcEEEecCC--------CCCCCCCee
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSS-QDRIIGAHFF--------SPAHVMPLL  453 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--i~~l~~~~~~-~~r~ig~h~~--------~p~~~~~lv  453 (721)
                      ||+|+.++|-+.+...-+-.+....++++++|+..+.+-.  ...+.+.+.. .-...++..|        +|-+..+.|
T Consensus       195 aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nv  274 (324)
T 3hg7_A          195 ADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNL  274 (324)
T ss_dssp             CSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCGGGBCHHHHHHHHHTTSSSEEEESCCSSSSCCTTCTTTTCTTE
T ss_pred             CCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCCchhhCHHHHHHHHHcCCceEEEeccCCCCCCCCCChhhcCCCE
Confidence            9999999996655443333455566889999875554433  3455555532 2233444433        233445667


Q ss_pred             EEecCC
Q 004972          454 EIVRTE  459 (721)
Q Consensus       454 Eiv~~~  459 (721)
                      -++|+-
T Consensus       275 ilTPHi  280 (324)
T 3hg7_A          275 IITPHN  280 (324)
T ss_dssp             EECCSC
T ss_pred             EEeCCC
Confidence            777753

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=98.26  E-value=3.4e-06  Score=88.67  Aligned_cols=121  Identities=21%  Similarity=0.309  Sum_probs=76.2

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcccc
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  382 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l  382 (721)
                      .+||+|||+|.+|.+++..++..|+  +|+++|+++++++.....+.+.. .... ..          -.+.. ++++++
T Consensus         6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~-~~~~-~~----------~~v~~-~~~~a~   72 (317)
T 3d0o_A            6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHAT-PYSP-TT----------VRVKA-GEYSDC   72 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHG-GGSS-SC----------CEEEE-CCGGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhh-hhcC-CC----------eEEEe-CCHHHh
Confidence            4699999999999999999998885  89999999887764322222211 1110 00          12332 456889


Q ss_pred             CCCCEEEEcccC--Ch------------HHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhccc----C-CCCcEEEe
Q 004972          383 KDVDMVIEAVIE--SV------------PLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKT----S-SQDRIIGA  441 (721)
Q Consensus       383 ~~aDlVIeavpe--~~------------~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~----~-~~~r~ig~  441 (721)
                      ++||+||.+++-  +.            .+.+++.+++.+++ ++++++..|  .|+..+...+    . .+.|++|+
T Consensus        73 ~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~t--NPv~~~t~~~~k~~~~p~~rviG~  147 (317)
T 3d0o_A           73 HDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASK-FDGIFLVAT--NPVDILAYATWKFSGLPKERVIGS  147 (317)
T ss_dssp             TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTT-CCSEEEECS--SSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEec--CcHHHHHHHHHHHhCCCHHHEEec
Confidence            999999999853  22            45566667777775 556555433  4444333322    2 33466653

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=98.26  E-value=5.6e-07  Score=94.18  Aligned_cols=128  Identities=13%  Similarity=0.078  Sum_probs=82.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|||||+|.||.++|..+...|++|++||++++..+..                          .......++ +.+++
T Consensus       140 ~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--------------------------~~~~~~~~l~ell~~  193 (315)
T 3pp8_A          140 FSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGV--------------------------ESYVGREELRAFLNQ  193 (315)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCTTC--------------------------EEEESHHHHHHHHHT
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhhhh--------------------------hhhcccCCHHHHHhh
Confidence            589999999999999999999999999999987532110                          000111233 45789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccCCC-CcEEEecCCC--------CCCCCCee
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQ-DRIIGAHFFS--------PAHVMPLL  453 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~~~-~r~ig~h~~~--------p~~~~~lv  453 (721)
                      ||+|+.++|-..+...-+-++....++++++|+..+.+  +....+.+.+... -...++..|.        |-+..+.|
T Consensus       194 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nv  273 (315)
T 3pp8_A          194 TRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRV  273 (315)
T ss_dssp             CSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGGGCTTE
T ss_pred             CCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECCCChhhhHHHHHHHHHhCCccEEEcCCCCCCCCCCCChhhcCCCE
Confidence            99999999977665444436667778999988754444  3334555554321 1222344332        22344556


Q ss_pred             EEecCC
Q 004972          454 EIVRTE  459 (721)
Q Consensus       454 Eiv~~~  459 (721)
                      -++|+-
T Consensus       274 ilTPHi  279 (315)
T 3pp8_A          274 AMTPHI  279 (315)
T ss_dssp             EECSSC
T ss_pred             EECCCC
Confidence            677753

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=98.25  E-value=1e-06  Score=92.44  Aligned_cols=102  Identities=20%  Similarity=0.246  Sum_probs=69.5

Q ss_pred             CceeEEEEcCCCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCcee-ccCcc
Q 004972          304 GVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDYS  380 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~  380 (721)
                      ..+||+|||+|.||.++|..++..|+  +|+++|+++++++.....+.+...               .+..+.. +.+++
T Consensus         8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~---------------~~~~~~i~~~~~~   72 (326)
T 3vku_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALP---------------FTSPKKIYSAEYS   72 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGG---------------GSCCCEEEECCGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhh---------------hcCCcEEEECcHH
Confidence            34699999999999999999999988  899999999887654332222110               0112332 44578


Q ss_pred             ccCCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCeEEEecCC
Q 004972          381 EFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTS  421 (721)
Q Consensus       381 ~l~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts  421 (721)
                      ++++||+||.+..-              +..+.+++.+.+.++++ +++++..|.
T Consensus        73 a~~~aDiVvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p-~a~ilvvtN  126 (326)
T 3vku_A           73 DAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGF-NGIFLVAAN  126 (326)
T ss_dssp             GGTTCSEEEECCCCC----------------CHHHHHHHHHTTTC-CSEEEECSS
T ss_pred             HhcCCCEEEECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCC-ceEEEEccC
Confidence            89999999988631              33456667777888765 565554443

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=98.24  E-value=3.3e-07  Score=96.16  Aligned_cols=102  Identities=13%  Similarity=0.109  Sum_probs=70.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|+|||+|.||.++|..+...|++|++||++++... +.           +.|             +... ++ +.+++
T Consensus       143 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~-----------~~g-------------~~~~-~l~ell~~  196 (313)
T 2ekl_A          143 KTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREK-AE-----------KIN-------------AKAV-SLEELLKN  196 (313)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHHH-HH-----------HTT-------------CEEC-CHHHHHHH
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchhH-HH-----------hcC-------------ceec-CHHHHHhh
Confidence            5899999999999999999999999999999886532 11           111             1122 33 55788


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH--HHHhcccC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS  433 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i--~~l~~~~~  433 (721)
                      ||+|+.++|.+.+...-+-++..+.+++++++++.+++-.+  ..+.+.+.
T Consensus       197 aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~  247 (313)
T 2ekl_A          197 SDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIK  247 (313)
T ss_dssp             CSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHH
T ss_pred             CCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCcccCHHHHHHHHH
Confidence            99999999966543222214455668899988865554333  34555553

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=98.24  E-value=4e-06  Score=90.41  Aligned_cols=132  Identities=14%  Similarity=0.139  Sum_probs=82.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|||||+|.||+.+|..+...|++|+.||+++...                .            .......++ +.+++
T Consensus       157 ktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~----------------~------------~~~~~~~sl~ell~~  208 (416)
T 3k5p_A          157 KTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQ----------------Y------------GNVKPAASLDELLKT  208 (416)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCC----------------B------------TTBEECSSHHHHHHH
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhc----------------c------------cCcEecCCHHHHHhh
Confidence            589999999999999999999999999999874310                0            012223344 55789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccCCCC-cEEEecCC------------CCCCC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQD-RIIGAHFF------------SPAHV  449 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~~~~-r~ig~h~~------------~p~~~  449 (721)
                      ||+|+.++|...+.+.-+-++....++++++|+..+.+  +....+.+.+.... .-.++.-|            +|-+.
T Consensus       209 aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~~g~i~gAalDVf~~EP~~~~~~~~~pL~~  288 (416)
T 3k5p_A          209 SDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQG  288 (416)
T ss_dssp             CSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEECCCSSCCSSTTSCCCCTTTT
T ss_pred             CCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCccEEEeCCCCCCCCCcccccchhHhc
Confidence            99999999976665443335566778999998765544  33445555553221 22333322            23344


Q ss_pred             CCeeEEecCCC-CCHHH
Q 004972          450 MPLLEIVRTER-TSAQV  465 (721)
Q Consensus       450 ~~lvEiv~~~~-t~~e~  465 (721)
                      .+.+-++|+-. .+.|+
T Consensus       289 ~~nvilTPHig~~T~ea  305 (416)
T 3k5p_A          289 LENVILTPHIGGSTEEA  305 (416)
T ss_dssp             CTTEEECCSCTTCCHHH
T ss_pred             CCCEEECCCCCCCCHHH
Confidence            55577888632 34443

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=98.21  E-value=1e-06  Score=93.02  Aligned_cols=101  Identities=9%  Similarity=0.013  Sum_probs=70.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|+|||.|.||.++|+.+...|++|++||++++.. .+.           ..|             +.. .++ +.+++
T Consensus       166 ~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~-~~~-----------~~g-------------~~~-~~l~ell~~  219 (335)
T 2g76_A          166 KTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPE-VSA-----------SFG-------------VQQ-LPLEEIWPL  219 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCHH-HHH-----------HTT-------------CEE-CCHHHHGGG
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchh-hhh-----------hcC-------------cee-CCHHHHHhc
Confidence            589999999999999999999999999999987642 111           111             111 233 55789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH--HHhccc
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKT  432 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~--~l~~~~  432 (721)
                      ||+|+.++|.+.+...-+-++..+.++++++|+..+++-.+.  .+.+.+
T Consensus       220 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL  269 (335)
T 2g76_A          220 CDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRAL  269 (335)
T ss_dssp             CSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHH
T ss_pred             CCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCccccCHHHHHHHH
Confidence            999999999766544333255667789999987655553333  445544

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=98.21  E-value=1.1e-06  Score=92.27  Aligned_cols=119  Identities=23%  Similarity=0.327  Sum_probs=72.2

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCC-CCHHHHHHhhcCceeccCccc
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVLDYSE  381 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~  381 (721)
                      .+||+|||+|.+|.+++..++..|+  +|+++|+++++++.....+        .... +.      ..-++.. +++++
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl--------~~~~~~~------~~~~i~~-~~~~a   71 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDI--------NHGLPFM------GQMSLYA-GDYSD   71 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHH--------TTSCCCT------TCEEEC---CGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHH--------HHhHHhc------CCeEEEE-CCHHH
Confidence            4689999999999999999999998  9999999987765321111        1110 00      0012332 45788


Q ss_pred             cCCCCEEEEcccCCh--------------HHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhccc----C-CCCcEEEe
Q 004972          382 FKDVDMVIEAVIESV--------------PLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKT----S-SQDRIIGA  441 (721)
Q Consensus       382 l~~aDlVIeavpe~~--------------~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~----~-~~~r~ig~  441 (721)
                      +++||+||.+++...              .+.+++.+++.+++ ++++++..  +.|+..+...+    . .+.|++|+
T Consensus        72 ~~~aDvVii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~--tNPv~~~~~~~~k~s~~p~~rviG~  147 (318)
T 1y6j_A           72 VKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYY-NHGVILVV--SNPVDIITYMIQKWSGLPVGKVIGS  147 (318)
T ss_dssp             GTTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHC-CSCEEEEC--SSSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred             hCCCCEEEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEEe--cCcHHHHHHHHHHHcCCCHHHEecc
Confidence            999999999986322              23466777788885 55655543  34444333222    2 34567664

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=98.19  E-value=9.6e-07  Score=95.62  Aligned_cols=100  Identities=15%  Similarity=0.169  Sum_probs=71.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|||||.|.||+.+|..+...|++|+.||++++..                .            +......++ +.+++
T Consensus       146 ktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~----------------~------------~~~~~~~~l~ell~~  197 (404)
T 1sc6_A          146 KKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP----------------L------------GNATQVQHLSDLLNM  197 (404)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC----------------C------------TTCEECSCHHHHHHH
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCchhc----------------c------------CCceecCCHHHHHhc
Confidence            589999999999999999999999999999975320                0            112223344 55789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH--HHHhcccC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS  433 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i--~~l~~~~~  433 (721)
                      ||+|+.++|...+.+.-+-++....++++++++..+.+-.+  ..+.+.+.
T Consensus       198 aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~  248 (404)
T 1sc6_A          198 SDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALA  248 (404)
T ss_dssp             CSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHH
T ss_pred             CCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECCCChHHhHHHHHHHHH
Confidence            99999999977665443335566778999998755544333  34555543

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=98.18  E-value=1.1e-06  Score=94.42  Aligned_cols=131  Identities=11%  Similarity=-0.008  Sum_probs=82.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|+|||+|.||.++|..+...|++|++||++++..+...           +.|             +....++ +.+++
T Consensus       192 ktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~-----------~~G-------------~~~~~~l~ell~~  247 (393)
T 2nac_A          192 MHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEK-----------ELN-------------LTWHATREDMYPV  247 (393)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHH-----------HHT-------------CEECSSHHHHGGG
T ss_pred             CEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHh-----------hcC-------------ceecCCHHHHHhc
Confidence            5899999999999999999999999999999864432211           001             2222334 55789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH--HHHhcccCCC-CcEEEecCCC--C------CCCCCee
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTSSQ-DRIIGAHFFS--P------AHVMPLL  453 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i--~~l~~~~~~~-~r~ig~h~~~--p------~~~~~lv  453 (721)
                      ||+|+.++|-+.+...-+-++..+.++++++|++.+.+-.+  ..+.+.+... -.-.++..|.  |      -+..+.+
T Consensus       248 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~pL~~~~nv  327 (393)
T 2nac_A          248 CDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYN  327 (393)
T ss_dssp             CSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESCCSSSSCCTTCGGGTSTTB
T ss_pred             CCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHcCCeeEEEEEecCCCCCCCCChhHcCCCE
Confidence            99999999966554322224566778999988765554333  3455555422 1223344432  2      2334456


Q ss_pred             EEecCCC
Q 004972          454 EIVRTER  460 (721)
Q Consensus       454 Eiv~~~~  460 (721)
                      -++|+-.
T Consensus       328 ilTPHia  334 (393)
T 2nac_A          328 GMTPHIS  334 (393)
T ss_dssp             CCCCSCT
T ss_pred             EECCCCC
Confidence            6777543

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=98.17  E-value=3.7e-06  Score=87.96  Aligned_cols=100  Identities=20%  Similarity=0.250  Sum_probs=67.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCC--CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  383 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  383 (721)
                      +||+|||+|.+|.+++..++..+  .+|+++|+++++++.....+.+... +  ...          -+++. +++++++
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~-~--~~~----------~~v~~-~~~~a~~   66 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATP-F--AHP----------VWVWA-GSYGDLE   66 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGG-G--SCC----------CEEEE-CCGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHh-h--cCC----------eEEEE-CCHHHhC
Confidence            48999999999999999999987  4899999998877653222221100 0  000          12333 4578899


Q ss_pred             CCCEEEEcccC--C------------hHHHHHHHHHHHhhCCCCeEEEecC
Q 004972          384 DVDMVIEAVIE--S------------VPLKQKIFSELEKACPPHCILATNT  420 (721)
Q Consensus       384 ~aDlVIeavpe--~------------~~~k~~v~~~l~~~~~~~~ii~s~t  420 (721)
                      +||+||.+++-  +            ..+.+++.+.+.++++ +++++..|
T Consensus        67 ~aD~Vii~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p-~a~iiv~t  116 (310)
T 2xxj_A           67 GARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAP-EAVLLVAT  116 (310)
T ss_dssp             TEEEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCT-TCEEEECS
T ss_pred             CCCEEEECCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHHCC-CcEEEEec
Confidence            99999998742  2            4456667777888864 55554433

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=98.16  E-value=2.7e-06  Score=89.34  Aligned_cols=99  Identities=21%  Similarity=0.205  Sum_probs=67.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCcee-ccCcccc
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDYSEF  382 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~l  382 (721)
                      +||+|||+|.+|.+++..++..++  +|+++|+++++++.....+.+..    .           ....++. .++++++
T Consensus         6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~----~-----------~~~~~~v~~~~~~a~   70 (318)
T 1ez4_A            6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQ----A-----------FTAPKKIYSGEYSDC   70 (318)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGG----G-----------GSCCCEEEECCGGGG
T ss_pred             CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHH----H-----------hcCCeEEEECCHHHh
Confidence            589999999999999999998887  89999999988775332222111    0           0012222 2456889


Q ss_pred             CCCCEEEEcccCC--h------------HHHHHHHHHHHhhCCCCeEEEecC
Q 004972          383 KDVDMVIEAVIES--V------------PLKQKIFSELEKACPPHCILATNT  420 (721)
Q Consensus       383 ~~aDlVIeavpe~--~------------~~k~~v~~~l~~~~~~~~ii~s~t  420 (721)
                      ++||+||.+++-.  .            .+.+++.+.+.+++ ++++++..|
T Consensus        71 ~~aDvVii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~t  121 (318)
T 1ez4_A           71 KDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSG-FDGIFLVAA  121 (318)
T ss_dssp             TTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTT-CCSEEEECS
T ss_pred             CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEeC
Confidence            9999999998521  1            45566667777775 555555433

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=98.16  E-value=1.3e-06  Score=91.49  Aligned_cols=125  Identities=16%  Similarity=0.107  Sum_probs=81.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|+|||+|.||.++|..+...|++|++||++++..+                              +. ..++ +.+++
T Consensus       145 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~------------------------------~~-~~~l~ell~~  193 (311)
T 2cuk_A          145 LTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLP------------------------------YP-FLSLEELLKE  193 (311)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSS------------------------------SC-BCCHHHHHHH
T ss_pred             CEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCcccc------------------------------cc-cCCHHHHHhh
Confidence            5899999999999999999999999999999875311                              11 1233 45688


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH--HHHhcccCCCCcEEEecCCC--C------CCCCCeeE
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTSSQDRIIGAHFFS--P------AHVMPLLE  454 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i--~~l~~~~~~~~r~ig~h~~~--p------~~~~~lvE  454 (721)
                      ||+|+.++|.+.+...-+-++..+.++++++++..+++-.+  ..+.+.+...-.-.++..|.  |      -+..+.+-
T Consensus       194 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~g~i~ga~lDv~~~eP~~~~~~L~~~~nvi  273 (311)
T 2cuk_A          194 ADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEALRGHLFGAGLDVTDPEPLPPGHPLYALPNAV  273 (311)
T ss_dssp             CSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHTTTSSEEEESSCSSSSCCTTSGGGGCTTEE
T ss_pred             CCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCccCHHHHHHHHhCcCCEEEEeeCCCCCCCCCChhhhCCCEE
Confidence            99999999976543332223455678899988765554333  34555555212224455543  2      23345566


Q ss_pred             EecCCCC
Q 004972          455 IVRTERT  461 (721)
Q Consensus       455 iv~~~~t  461 (721)
                      ++|+...
T Consensus       274 ltPh~~~  280 (311)
T 2cuk_A          274 ITPHIGS  280 (311)
T ss_dssp             ECCSCTT
T ss_pred             ECCcCCC
Confidence            7776543

>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1

Probab=98.16  E-value=3.6e-06  Score=81.83  Aligned_cols=138  Identities=21%  Similarity=0.189  Sum_probs=96.6

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEEC
Q 004972           27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE  106 (721)
Q Consensus        27 al~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav~  106 (721)
                      .++..+.+.+...|..++.++..+.|+|.=.    |.|+++.                ....++ +.+...++|+++.+.
T Consensus        38 ~I~~~~a~~i~~~L~~l~~~~~~~~I~l~IN----SpGG~v~----------------~~~~I~-~~i~~~~~~v~t~~~   96 (201)
T 3p2l_A           38 EVNDHSANLVIAQLLFLESEDPDKDIYFYIN----SPGGMVT----------------AGMGVY-DTMQFIKPDVSTICI   96 (201)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCSSSCEEEEEE----ECCBCHH----------------HHHHHH-HHHHHSSSCEEEEEE
T ss_pred             EECHHHHHHHHHHHHHHHhcCCCCCEEEEEE----CCCCCHH----------------HHHHHH-HHHHHhCCCeEEEEc
Confidence            4888999999999999987666666666321    2233321                122444 667889999999999


Q ss_pred             CcccccchHhhhhcCE--EEeeCCceEeCcccccCcccc--c-----------------cccccc--cCHHHHHHHHHcC
Q 004972          107 GLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPG--T-----------------QRLPRL--VGLSKAIEMMLLS  163 (721)
Q Consensus       107 G~a~GgG~~lalacD~--ria~~~a~~~~pe~~~Gl~P~--~-----------------~~l~r~--~G~~~a~~l~ltg  163 (721)
                      |.|.++|.-++++||.  |++.+++.+.+....-| .-|  +                 ..+.+.  .......+++-..
T Consensus        97 G~AaS~g~~i~~ag~~g~r~~~p~a~imiH~p~~~-~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~e~i~~~~~~~  175 (201)
T 3p2l_A           97 GLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGG-FRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDTDRD  175 (201)
T ss_dssp             EEEETHHHHHHHTSSTTCEEECTTCEEEECCCEEE-EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTSSC
T ss_pred             CEehhHHHHHHHcCccCCEEEcCCCeEEEeccccc-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhhcC
Confidence            9999999999999998  99999999988766432 222  0                 001111  2334444555555


Q ss_pred             CCcCHHHHHHcCCccEEcCC-chH
Q 004972          164 KSITSEEGWKLGLIDAVVTS-EEL  186 (721)
Q Consensus       164 ~~~~a~eA~~~Glv~~vv~~-~~l  186 (721)
                      ..++|+||+++||||+|++. +++
T Consensus       176 ~~lta~EA~e~GliD~I~~~~~~l  199 (201)
T 3p2l_A          176 NFMMADEAKAYGLIDHVIESREAI  199 (201)
T ss_dssp             EEEEHHHHHHHTSCSEECCCSCC-
T ss_pred             eeecHHHHHHcCCccEecCCHHHh
Confidence            66899999999999999854 444

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=98.16  E-value=3.4e-06  Score=89.76  Aligned_cols=137  Identities=8%  Similarity=0.049  Sum_probs=85.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|||||.|.||.++|..+...|++|+.||++... +.+           ...|             +.. .++ +.+++
T Consensus       177 ktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~-----------~~~g-------------~~~-~~l~ell~~  230 (365)
T 4hy3_A          177 SEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPR-SML-----------EENG-------------VEP-ASLEDVLTK  230 (365)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTSCCEEEEECSSSCH-HHH-----------HHTT-------------CEE-CCHHHHHHS
T ss_pred             CEEEEecCCcccHHHHHhhhhCCCEEEEECCCCCH-HHH-----------hhcC-------------eee-CCHHHHHhc
Confidence            58999999999999999999999999999998532 111           0111             222 234 56789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccCCCCcEEEecCCC--C------CCCCCeeE
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFS--P------AHVMPLLE  454 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~~~~r~ig~h~~~--p------~~~~~lvE  454 (721)
                      ||+|+.++|-+.+...-+-.+....++++++|+..+.+  +.-..+.+.+....-..++.-|.  |      -+..+.|-
T Consensus       231 aDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~aaLDV~~~EPl~~~~pL~~~~nvi  310 (365)
T 4hy3_A          231 SDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAVSSGHIVAASDVYPEEPLPLDHPVRSLKGFI  310 (365)
T ss_dssp             CSEEEECSCSSCC---CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTTSSEEEESCCSSSSCCTTCGGGTCTTEE
T ss_pred             CCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHHHcCCceEEeeCCCCCCCCCCChhhcCCCEE
Confidence            99999999977665544446677778999998754443  33345555554322114444332  2      23445577


Q ss_pred             EecCCC-CCHHHHHH
Q 004972          455 IVRTER-TSAQVILD  468 (721)
Q Consensus       455 iv~~~~-t~~e~~~~  468 (721)
                      ++|+-. .+.++.+.
T Consensus       311 lTPHia~~t~e~~~~  325 (365)
T 4hy3_A          311 RSAHRAGALDSAFKK  325 (365)
T ss_dssp             ECCSCSSCCHHHHHH
T ss_pred             ECCccccCHHHHHHH
Confidence            777543 24444433

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=98.15  E-value=3e-06  Score=89.22  Aligned_cols=100  Identities=19%  Similarity=0.226  Sum_probs=67.7

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCcee-ccCccc
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDYSE  381 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~  381 (721)
                      .+||+|||+|.+|.+++..++..++  +|+++|+++++++.....+.+..    .           ....+.. .+++++
T Consensus         9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~----~-----------~~~~~~i~~~~~~a   73 (326)
T 2zqz_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNAL----P-----------FTSPKKIYSAEYSD   73 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTG----G-----------GSCCCEEEECCGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHH----H-----------hcCCeEEEECCHHH
Confidence            3699999999999999999998886  89999999988765332222111    0           0112222 245688


Q ss_pred             cCCCCEEEEcccCC--h------------HHHHHHHHHHHhhCCCCeEEEecC
Q 004972          382 FKDVDMVIEAVIES--V------------PLKQKIFSELEKACPPHCILATNT  420 (721)
Q Consensus       382 l~~aDlVIeavpe~--~------------~~k~~v~~~l~~~~~~~~ii~s~t  420 (721)
                      +++||+||.+++-.  .            .+.+++.+.+.+++ ++++++..|
T Consensus        74 ~~~aDvVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~t  125 (326)
T 2zqz_A           74 AKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSG-FNGIFLVAA  125 (326)
T ss_dssp             GGGCSEEEECCCCC-----CHHHHHHHHHHHHHHHHHHHHHHT-CCSEEEECS
T ss_pred             hCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeC
Confidence            99999999998522  1            45566667777886 555554433

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=98.12  E-value=2e-06  Score=91.20  Aligned_cols=102  Identities=14%  Similarity=0.021  Sum_probs=69.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|+|||+|.||..+|..+...|++|++||++++.... .           ..|             +....++ +.+++
T Consensus       169 ~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~-~-----------~~g-------------~~~~~~l~ell~~  223 (347)
T 1mx3_A          169 ETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVE-R-----------ALG-------------LQRVSTLQDLLFH  223 (347)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTHH-H-----------HHT-------------CEECSSHHHHHHH
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchhhH-h-----------hcC-------------CeecCCHHHHHhc
Confidence            58999999999999999999999999999987643110 0           001             1222344 55788


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCC--HHHHhccc
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKT  432 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--i~~l~~~~  432 (721)
                      ||+|+.++|.+.+...-+-++..+.++++++|+..+++-.  ...+.+.+
T Consensus       224 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL  273 (347)
T 1mx3_A          224 SDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQAL  273 (347)
T ss_dssp             CSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHH
T ss_pred             CCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHH
Confidence            9999999996655433332555667899998886555433  34455544

>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1

Probab=98.11  E-value=5.2e-06  Score=84.18  Aligned_cols=135  Identities=17%  Similarity=0.186  Sum_probs=95.5

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEEC
Q 004972           27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE  106 (721)
Q Consensus        27 al~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav~  106 (721)
                      .++.++.+.+...|..++.++..+.|+|.=.    |.|+++.                ....++ +.|...++||++.+.
T Consensus        90 ~I~d~~a~~iiaqL~~l~~ed~~k~I~L~IN----SPGGsV~----------------ag~aIy-d~I~~~k~pV~t~v~  148 (277)
T 1tg6_A           90 PIDDSVASLVIAQLLFLQSESNKKPIHMYIN----SPGGVVT----------------AGLAIY-DTMQYILNPICTWCV  148 (277)
T ss_dssp             SBCHHHHHHHHHHHHHHHHHCSSSCEEEEEE----ECCBCHH----------------HHHHHH-HHHHHSCSCEEEEEE
T ss_pred             EECHHHHHHHHHHHHHHHhcCCCCCEEEEEE----CCCCCHH----------------HHHHHH-HHHHhcCCCEEEEEc
Confidence            3788899999999998876555677776421    2223221                122445 567888999999999


Q ss_pred             CcccccchHhhhhcCE--EEeeCCceEeCcccccCcccc--cc-----------------ccccc--cCHHHHHHHHHcC
Q 004972          107 GLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPG--TQ-----------------RLPRL--VGLSKAIEMMLLS  163 (721)
Q Consensus       107 G~a~GgG~~lalacD~--ria~~~a~~~~pe~~~Gl~P~--~~-----------------~l~r~--~G~~~a~~l~ltg  163 (721)
                      |.|..+|.-++++||.  |++.+++.++.....-|. -|  +.                 .+.+.  .......+++-.+
T Consensus       149 G~AASaG~~Ia~Agd~gkr~a~P~S~ImihqP~~g~-~G~a~Di~~~a~ei~~~~~~~~~i~a~~tG~~~e~i~~~~drd  227 (277)
T 1tg6_A          149 GQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGA-RGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERD  227 (277)
T ss_dssp             EEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCC-CSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHSSC
T ss_pred             cEeHHHHHHHHHCCCcCCEEEecCCEEEEecccccc-cCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcC
Confidence            9999999999999999  999999999987654332 22  00                 01111  2234455555556


Q ss_pred             CCcCHHHHHHcCCccEEcCC
Q 004972          164 KSITSEEGWKLGLIDAVVTS  183 (721)
Q Consensus       164 ~~~~a~eA~~~Glv~~vv~~  183 (721)
                      ..++|+||+++||||+|...
T Consensus       228 ~~lta~EAle~GLID~I~~~  247 (277)
T 1tg6_A          228 RYMSPMEAQEFGILDKVLVH  247 (277)
T ss_dssp             EEECHHHHHHHTSCSEECSS
T ss_pred             cccCHHHHHHCCCCCEecCc
Confidence            77899999999999999854

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=98.08  E-value=2e-06  Score=90.97  Aligned_cols=111  Identities=17%  Similarity=0.117  Sum_probs=75.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|||||.|.||.++|..+...|++|+.||++++..              .+.             ..... ++ +.+++
T Consensus       149 ktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~--------------~~~-------------~~~~~-~l~ell~~  200 (343)
T 2yq5_A          149 LTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPE--------------FEP-------------FLTYT-DFDTVLKE  200 (343)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCGG--------------GTT-------------TCEEC-CHHHHHHH
T ss_pred             CeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhhh--------------hhc-------------ccccc-CHHHHHhc
Confidence            589999999999999999999999999999987530              010             12222 44 55789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccC-CCCcEEEecCC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS-SQDRIIGAHFF  444 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~-~~~r~ig~h~~  444 (721)
                      ||+|+.++|-+.+...-+-.+....++++++|+..+.+  +....+.+.+. ..-...++.-|
T Consensus       201 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~LDV~  263 (343)
T 2yq5_A          201 ADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLDTL  263 (343)
T ss_dssp             CSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSCEEESCC
T ss_pred             CCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCCcEEEeccc
Confidence            99999999966655444445566778999998755444  33345555543 22233455443

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=98.05  E-value=3.4e-05  Score=70.06  Aligned_cols=97  Identities=19%  Similarity=0.186  Sum_probs=61.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCC-CHHHHHHhhcCceeccCccccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL-TQDKANNALKMLKGVLDYSEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~i~~~~~~~~l~~  384 (721)
                      ++|.|+|+|.||..++..|.+.|++|+++|++++.++.....    .....-.+.. +....           ....+.+
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~----~~~~~~~~d~~~~~~l-----------~~~~~~~   69 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE----IDALVINGDCTKIKTL-----------EDAGIED   69 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----CSSEEEESCTTSHHHH-----------HHTTTTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHh----cCcEEEEcCCCCHHHH-----------HHcCccc
Confidence            489999999999999999999999999999999876654210    0000000100 00000           0023678


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEec
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATN  419 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~  419 (721)
                      +|+||.|+|.+ . ....+.++.+.++++.+++..
T Consensus        70 ~d~vi~~~~~~-~-~~~~~~~~~~~~~~~~ii~~~  102 (140)
T 1lss_A           70 ADMYIAVTGKE-E-VNLMSSLLAKSYGINKTIARI  102 (140)
T ss_dssp             CSEEEECCSCH-H-HHHHHHHHHHHTTCCCEEEEC
T ss_pred             CCEEEEeeCCc-h-HHHHHHHHHHHcCCCEEEEEe
Confidence            99999999853 2 223344455556766776643

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=98.04  E-value=2.3e-06  Score=90.18  Aligned_cols=102  Identities=17%  Similarity=0.123  Sum_probs=72.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|||||.|.||.++|..+...|++|++||+++...+....           .             .+... ++ +.+++
T Consensus       146 ~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~-----------~-------------g~~~~-~l~ell~~  200 (330)
T 4e5n_A          146 ATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQR-----------L-------------GLRQV-ACSELFAS  200 (330)
T ss_dssp             CEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHHHHHH-----------H-------------TEEEC-CHHHHHHH
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHhHHHh-----------c-------------CceeC-CHHHHHhh
Confidence            68999999999999999999999999999998733222110           0             12222 34 55788


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhccc
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKT  432 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~  432 (721)
                      ||+|+.++|-+.+...-+-++..+.++++++|+..+.+  +....+.+.+
T Consensus       201 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL  250 (330)
T 4e5n_A          201 SDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAAL  250 (330)
T ss_dssp             CSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred             CCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHH
Confidence            99999999966665544445677788999998765544  3334555544

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=98.03  E-value=5.2e-06  Score=87.07  Aligned_cols=89  Identities=11%  Similarity=0.119  Sum_probs=64.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHC-CC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc
Q 004972          306 RKVAVIGGGLMGSGIATAHILN-NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  382 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~-G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  382 (721)
                      ++|+|||+|.||..++..+++. |+ +|++||+++++++...+.+          +           ..+...+++ +.+
T Consensus       136 ~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~----------~-----------~~~~~~~~~~e~v  194 (312)
T 2i99_A          136 EVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTV----------Q-----------GEVRVCSSVQEAV  194 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHS----------S-----------SCCEECSSHHHHH
T ss_pred             cEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHh----------h-----------CCeEEeCCHHHHH
Confidence            5899999999999999999876 76 8999999999877643210          1           013445555 567


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCC
Q 004972          383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  421 (721)
Q Consensus       383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts  421 (721)
                      ++||+||.|+|..    ..++..  +.++++++|++.++
T Consensus       195 ~~aDiVi~atp~~----~~v~~~--~~l~~g~~vi~~g~  227 (312)
T 2i99_A          195 AGADVIITVTLAT----EPILFG--EWVKPGAHINAVGA  227 (312)
T ss_dssp             TTCSEEEECCCCS----SCCBCG--GGSCTTCEEEECCC
T ss_pred             hcCCEEEEEeCCC----CcccCH--HHcCCCcEEEeCCC
Confidence            8999999999953    233322  46788888876543

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=98.03  E-value=3.3e-05  Score=70.60  Aligned_cols=105  Identities=13%  Similarity=0.029  Sum_probs=65.4

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCC-HHHHHHhhcCceeccCccccC
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT-QDKANNALKMLKGVLDYSEFK  383 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~~~~~l~  383 (721)
                      +++|.|+|+|.+|..+|..|.+.|++|+++|++++.++.+.+.     ....-.+-.+ ++...           ...+.
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~-----~~~~~~gd~~~~~~l~-----------~~~~~   69 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDE-----GFDAVIADPTDESFYR-----------SLDLE   69 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT-----TCEEEECCTTCHHHHH-----------HSCCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC-----CCcEEECCCCCHHHHH-----------hCCcc
Confidence            5689999999999999999999999999999999987765320     0000011111 00000           01257


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHH
Q 004972          384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI  427 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~  427 (721)
                      ++|+||.+++ +.+....+...+...- ...+++...+......
T Consensus        70 ~~d~vi~~~~-~~~~n~~~~~~a~~~~-~~~iia~~~~~~~~~~  111 (141)
T 3llv_A           70 GVSAVLITGS-DDEFNLKILKALRSVS-DVYAIVRVSSPKKKEE  111 (141)
T ss_dssp             TCSEEEECCS-CHHHHHHHHHHHHHHC-CCCEEEEESCGGGHHH
T ss_pred             cCCEEEEecC-CHHHHHHHHHHHHHhC-CceEEEEEcChhHHHH
Confidence            8999999998 4444444444444444 5556665554443333

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=98.00  E-value=2.1e-06  Score=91.84  Aligned_cols=104  Identities=15%  Similarity=0.065  Sum_probs=71.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCc-eEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  383 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~-V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  383 (721)
                      ++|+|||+|.||..+|..+...|++ |++||+++...+...           +.|             +....++ +.++
T Consensus       165 ~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~-----------~~g-------------~~~~~~l~ell~  220 (364)
T 2j6i_A          165 KTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEE-----------KVG-------------ARRVENIEELVA  220 (364)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHH-----------HTT-------------EEECSSHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHH-----------hcC-------------cEecCCHHHHHh
Confidence            5899999999999999999999997 999999875433211           111             2223344 5578


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccC
Q 004972          384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS  433 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~  433 (721)
                      +||+|+.++|.+.+...-+-++..+.++++++|++.+.+  +....+.+.+.
T Consensus       221 ~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL~  272 (364)
T 2j6i_A          221 QADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALE  272 (364)
T ss_dssp             TCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             cCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEEECCCCchhCHHHHHHHHH
Confidence            999999999976554433334566778999988765554  23345555543

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=97.97  E-value=3.3e-06  Score=89.32  Aligned_cols=101  Identities=14%  Similarity=0.037  Sum_probs=70.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|+|||+|.||.++|..+...|++|++||++++..  . .       ..                 +...+++ +.+++
T Consensus       147 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~-------~~-----------------~~~~~~l~ell~~  199 (333)
T 1j4a_A          147 QVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE--L-E-------KK-----------------GYYVDSLDDLYKQ  199 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH--H-H-------HT-----------------TCBCSCHHHHHHH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchh--H-H-------hh-----------------CeecCCHHHHHhh
Confidence            589999999999999999999999999999987652  1 0       00                 1112233 45688


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS  433 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~  433 (721)
                      ||+|+.++|.+.+...-+-++..+.+++++++++.+.+  +....+.+.+.
T Consensus       200 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~  250 (333)
T 1j4a_A          200 ADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLD  250 (333)
T ss_dssp             CSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             CCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHHH
Confidence            99999999976654432224455678899988765554  33345555543

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=97.85  E-value=8.8e-05  Score=83.22  Aligned_cols=170  Identities=15%  Similarity=0.059  Sum_probs=110.2

Q ss_pred             EEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHH
Q 004972           15 VAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL   93 (721)
Q Consensus        15 v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (721)
                      |+++..+.. ..-++.+...+.+..+++.+.+.. +-+|.|.-     |.|+.+.+-......  ...+...+.+ + ..
T Consensus       107 v~v~a~D~t~~gGs~g~~~~~Ki~r~~e~A~~~~-lPvI~l~d-----SgGArlqe~~~~l~~--~~~~g~i~~~-~-~~  176 (587)
T 1pix_A          107 CVVVASDNKKLAGAWVPGQAECLLRASDTAKTLH-VPLVYVLN-----CSGVKFDEQEKVYPN--RRGGGTPFFR-N-AE  176 (587)
T ss_dssp             EEEEEECTTTTTTEECTTHHHHHHHHHHHHHHHT-CCEEEEEC-----CCEECGGGHHHHSSS--TTSTTHHHHH-H-HH
T ss_pred             EEEEEECCccccCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEe-----CCCCCccccchhccc--cccHHHHHHH-H-HH
Confidence            344444443 246788888899999998887653 44566654     456666543221110  0112222222 3 33


Q ss_pred             HhhCCCcEEEEECCcccccchHhhhhcCEEEeeC-CceEeCcccccCccccccccccccCHHHHHHHH-HcCCCcCHHH-
Q 004972           94 IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAP-KTQLGLPELTLGVIPGTQRLPRLVGLSKAIEMM-LLSKSITSEE-  170 (721)
Q Consensus        94 l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~-~a~~~~pe~~~Gl~P~~~~l~r~~G~~~a~~l~-ltg~~~~a~e-  170 (721)
                      +.....|+|++|.|.|.|||... ..||++|+++ ++.+++.-..  ++- ...---.++..+|.+++ .+|+.+++++ 
T Consensus       177 ls~~giP~Isvv~G~~~GGga~~-a~~d~vim~e~~a~i~~~GP~--vi~-~~~~~~~~d~~~A~el~~~tge~v~~e~l  252 (587)
T 1pix_A          177 LNQLGIPVIVGIYGTNPAGGGYH-SISPTVIIAHEKANMAVGGAG--IMG-GMNPKGHVDLEYANEIADMVDRTGKTEPP  252 (587)
T ss_dssp             HHHTTCCEEEEECSEEETHHHHH-HHSSSEEEEETTCEEESCCCT--TCC-SCCSSSSCCHHHHHHHHHHHHTTCCCCCS
T ss_pred             HhCCCCCEEEEEecCCcHHHHHH-HhcCceEEecCCcEEEecCHH--HHh-hhccccccchhHHHHHHHHhCCccChhhc
Confidence            67889999999999999999999 9999999986 4888873211  010 11111237999999999 9999988665 


Q ss_pred             ------HHHcCCccEEcCCchHHHHHHHHHHHHHhcC
Q 004972          171 ------GWKLGLIDAVVTSEELLKVSRLWALDIAARR  201 (721)
Q Consensus       171 ------A~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~  201 (721)
                            +.+.|++|.+++.++   ++.+.++++.+.-
T Consensus       253 gga~~h~~~~GvvD~vv~~e~---~a~~~~r~~ls~l  286 (587)
T 1pix_A          253 GAVDIHYTETGFMREVYASEE---GVLEGIKKYVGML  286 (587)
T ss_dssp             SBHHHHTTTSCCSCEEESSHH---HHHHHHHHHHHTS
T ss_pred             ccHHHHHhhcCceeEecCCHH---HHHHHHHHHHHhC
Confidence                  236899999998765   4555555555543

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=97.83  E-value=2.7e-06  Score=90.66  Aligned_cols=111  Identities=14%  Similarity=0.074  Sum_probs=74.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|||||.|.||+++|..+...|++|++||++.+..               ..+             .. ..++ +.+++
T Consensus       120 ktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~---------------~~~-------------~~-~~sl~ell~~  170 (381)
T 3oet_A          120 RTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAAR---------------GDE-------------GD-FRTLDELVQE  170 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHT---------------TCC-------------SC-BCCHHHHHHH
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEECCChHHh---------------ccC-------------cc-cCCHHHHHhh
Confidence            589999999999999999999999999999744321               000             11 2334 55789


Q ss_pred             CCEEEEcccCChH----HHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccCC-CCcEEEecCCC
Q 004972          385 VDMVIEAVIESVP----LKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSS-QDRIIGAHFFS  445 (721)
Q Consensus       385 aDlVIeavpe~~~----~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~~-~~r~ig~h~~~  445 (721)
                      ||+|+.++|-..+    ...-+-.+....++++++|+..+.+  +.-..+.+.+.. .-...++..|.
T Consensus       171 aDiV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDV~e  238 (381)
T 3oet_A          171 ADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDVWE  238 (381)
T ss_dssp             CSEEEECCCCCCSSTTCCTTSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCT
T ss_pred             CCEEEEcCcCCccccccchhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCCeEEEeeccc
Confidence            9999999996655    3333334556678999998754444  333455555542 33445566554

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=97.83  E-value=6.5e-06  Score=75.87  Aligned_cols=69  Identities=20%  Similarity=0.195  Sum_probs=52.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|+|||+|.||..++..|...|++|+++|+++++++...+.+          +           ..+...++. +.+++
T Consensus        22 ~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~----------~-----------~~~~~~~~~~~~~~~   80 (144)
T 3oj0_A           22 NKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKY----------E-----------YEYVLINDIDSLIKN   80 (144)
T ss_dssp             CEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHH----------T-----------CEEEECSCHHHHHHT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHh----------C-----------CceEeecCHHHHhcC
Confidence            5899999999999999999999999999999999876542211          0           012223344 55688


Q ss_pred             CCEEEEcccCC
Q 004972          385 VDMVIEAVIES  395 (721)
Q Consensus       385 aDlVIeavpe~  395 (721)
                      +|+||.|+|..
T Consensus        81 ~Divi~at~~~   91 (144)
T 3oj0_A           81 NDVIITATSSK   91 (144)
T ss_dssp             CSEEEECSCCS
T ss_pred             CCEEEEeCCCC
Confidence            99999999854

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.83  E-value=5e-05  Score=66.62  Aligned_cols=98  Identities=17%  Similarity=0.111  Sum_probs=60.9

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCC-CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  382 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  382 (721)
                      +++|.|+|+|.||..++..|.+.| ++|+++|+++++++...           ..+ +.     .....+.-..++ +.+
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~-----------~~~-~~-----~~~~d~~~~~~~~~~~   67 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLN-----------RMG-VA-----TKQVDAKDEAGLAKAL   67 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH-----------TTT-CE-----EEECCTTCHHHHHHHT
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH-----------hCC-Cc-----EEEecCCCHHHHHHHH
Confidence            478999999999999999999999 99999999998866542           111 00     000000000111 345


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCC
Q 004972          383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID  424 (721)
Q Consensus       383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~  424 (721)
                      +++|+||.|+|  ......+.....   ..+.-.+..++...
T Consensus        68 ~~~d~vi~~~~--~~~~~~~~~~~~---~~g~~~~~~~~~~~  104 (118)
T 3ic5_A           68 GGFDAVISAAP--FFLTPIIAKAAK---AAGAHYFDLTEDVA  104 (118)
T ss_dssp             TTCSEEEECSC--GGGHHHHHHHHH---HTTCEEECCCSCHH
T ss_pred             cCCCEEEECCC--chhhHHHHHHHH---HhCCCEEEecCcHH
Confidence            78999999998  444444444332   23444444444443

>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A

Probab=97.80  E-value=8.7e-05  Score=80.54  Aligned_cols=120  Identities=14%  Similarity=0.150  Sum_probs=73.4

Q ss_pred             ceeEEEEcCCCC-cHHHHHHHHH--C---CCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccC
Q 004972          305 VRKVAVIGGGLM-GSGIATAHIL--N---NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD  378 (721)
Q Consensus       305 ~~kI~VIG~G~m-G~~iA~~la~--~---G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  378 (721)
                      .+||+|||+|.. +.++...|+.  .   +.+|+++|+++++++.+.+ +...+   ....           .++..++|
T Consensus         2 ~~KI~IIGaG~v~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~~~~-~~~~~---~~~~-----------~~v~~t~d   66 (417)
T 1up7_A            2 HMRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVD-FVKRL---VKDR-----------FKVLISDT   66 (417)
T ss_dssp             CCEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHH-HHHHH---HTTS-----------SEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHHHHH-HHHHH---hhCC-----------eEEEEeCC
Confidence            369999999985 2222234455  3   4589999999998776332 21111   1110           24677778


Q ss_pred             c-cccCCCCEEEEcccC----------------------------------ChHHHHHHHHHHHhhCCCCeEEEecCCCC
Q 004972          379 Y-SEFKDVDMVIEAVIE----------------------------------SVPLKQKIFSELEKACPPHCILATNTSTI  423 (721)
Q Consensus       379 ~-~~l~~aDlVIeavpe----------------------------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~  423 (721)
                      + +++++||+||.++--                                  +..+..++.+++.+++  +++++.-|...
T Consensus        67 ~~~al~~AD~Viitagvg~~~~~~rd~~i~~k~glvgqeT~G~GGi~~~~rni~i~~~i~~~i~~~~--~A~lin~TNPv  144 (417)
T 1up7_A           67 FEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTS--NATIVNFTNPS  144 (417)
T ss_dssp             HHHHHTTCSEEEECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHTT--CCEEEECSSSH
T ss_pred             HHHHhCCCCEEEEcCCCCCCCccchhhhhhhhcCcccccccccchhHHhhccHHHHHHHHHHHHHHC--CEEEEEeCChH
Confidence            7 889999999999821                                  1134667778888888  67776555443


Q ss_pred             CH-HHHhcccCCCCcEEEe
Q 004972          424 DL-NIVGEKTSSQDRIIGA  441 (721)
Q Consensus       424 ~i-~~l~~~~~~~~r~ig~  441 (721)
                      .+ ++.........|++|+
T Consensus       145 di~t~a~~k~~p~~rviG~  163 (417)
T 1up7_A          145 GHITEFVRNYLEYEKFIGL  163 (417)
T ss_dssp             HHHHHHHHHTTCCSSEEEC
T ss_pred             HHHHHHHHHhCCCCCEEEe
Confidence            32 3333233333477763

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=97.79  E-value=4.9e-06  Score=87.94  Aligned_cols=100  Identities=16%  Similarity=0.068  Sum_probs=70.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|+|||.|.||..+|..+...|++|++||++++..  .            .             ...... ++ +.+++
T Consensus       146 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~------------~-------------~~~~~~-~l~ell~~  197 (333)
T 1dxy_A          146 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG--D------------H-------------PDFDYV-SLEDLFKQ  197 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS--C------------C-------------TTCEEC-CHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchh--h------------H-------------hccccC-CHHHHHhc
Confidence            589999999999999999999999999999986431  0            0             001112 34 55789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS  433 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~  433 (721)
                      ||+|+.++|.+.+...-+-++..+.++++++++..+++  +....+.+.+.
T Consensus       198 aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~  248 (333)
T 1dxy_A          198 SDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLK  248 (333)
T ss_dssp             CSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred             CCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHH
Confidence            99999999977665443324566678999988755544  33345555554

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=97.78  E-value=9.6e-05  Score=77.36  Aligned_cols=94  Identities=16%  Similarity=0.229  Sum_probs=63.1

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCC--CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCcee---ccCc
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG---VLDY  379 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~~  379 (721)
                      +||+|||+ |.+|.+++..|+..|  .+|+++|+++.  +....    .    +.....        ..++..   ++++
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~--~~~a~----d----L~~~~~--------~~~l~~~~~t~d~   62 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT--PGVAA----D----LSHIET--------RATVKGYLGPEQL   62 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSH--HHHHH----H----HTTSSS--------SCEEEEEESGGGH
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCcc--HHHHH----H----HhccCc--------CceEEEecCCCCH
Confidence            38999998 999999999999988  68999999971  11100    0    111110        013444   3567


Q ss_pred             c-ccCCCCEEEEccc--CCh------------HHHHHHHHHHHhhCCCCeEEEe
Q 004972          380 S-EFKDVDMVIEAVI--ESV------------PLKQKIFSELEKACPPHCILAT  418 (721)
Q Consensus       380 ~-~l~~aDlVIeavp--e~~------------~~k~~v~~~l~~~~~~~~ii~s  418 (721)
                      + ++++||+||.++.  ...            .+.+++.+.+.++++ +++++.
T Consensus        63 ~~a~~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p-~a~viv  115 (314)
T 1mld_A           63 PDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCP-DAMICI  115 (314)
T ss_dssp             HHHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEE
T ss_pred             HHHhCCCCEEEECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEE
Confidence            4 6999999999873  211            567777778888874 444443

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=97.77  E-value=4.4e-06  Score=89.31  Aligned_cols=110  Identities=11%  Similarity=0.069  Sum_probs=72.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|||||.|.||.++|..+...|++|++||++++..               ..+             .. ..++ +.+++
T Consensus       117 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~---------------~~g-------------~~-~~~l~ell~~  167 (380)
T 2o4c_A          117 RTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAR---------------EPD-------------GE-FVSLERLLAE  167 (380)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHH---------------STT-------------SC-CCCHHHHHHH
T ss_pred             CEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChhhh---------------ccC-------------cc-cCCHHHHHHh
Confidence            589999999999999999999999999999765421               001             01 1233 45689


Q ss_pred             CCEEEEcccCChH----HHHHHHHHHHhhCCCCeEEEecCCCC--CHHHHhcccCCC-CcEEEecCC
Q 004972          385 VDMVIEAVIESVP----LKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTSSQ-DRIIGAHFF  444 (721)
Q Consensus       385 aDlVIeavpe~~~----~k~~v~~~l~~~~~~~~ii~s~ts~~--~i~~l~~~~~~~-~r~ig~h~~  444 (721)
                      ||+|+.++|-..+    ...-+-++..+.++++++++..+.+-  ....+.+.+... -...++..|
T Consensus       168 aDvV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~~g~i~~A~LDV~  234 (380)
T 2o4c_A          168 ADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVW  234 (380)
T ss_dssp             CSEEEECCCCCSSSSSCCTTSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCC
T ss_pred             CCEEEEeccCccccccchhhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCceEEeeee
Confidence            9999999996554    33322245667789999887544442  334555555322 233444444

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=97.77  E-value=6.5e-05  Score=78.32  Aligned_cols=119  Identities=18%  Similarity=0.314  Sum_probs=72.2

Q ss_pred             eeEEEEc-CCCCcHHHHHHHHHCCC--ceEEEeC--CHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcc
Q 004972          306 RKVAVIG-GGLMGSGIATAHILNNI--YVVLKEV--NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS  380 (721)
Q Consensus       306 ~kI~VIG-~G~mG~~iA~~la~~G~--~V~l~d~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  380 (721)
                      +||+|+| +|.+|.+++..|+..|+  +++++|+  ++++++.....+.+... + . ..          -.+.. ++++
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~-~-~-~~----------~~v~~-~~~~   66 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIA-Y-D-SN----------TRVRQ-GGYE   66 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHT-T-T-CC----------CEEEE-CCGG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHh-h-C-CC----------cEEEe-CCHH
Confidence            4899999 99999999999998886  7999999  87765432222221111 0 0 00          12332 3567


Q ss_pred             ccCCCCEEEEcccC--C------------hHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcc----cC-CCCcEEEe
Q 004972          381 EFKDVDMVIEAVIE--S------------VPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEK----TS-SQDRIIGA  441 (721)
Q Consensus       381 ~l~~aDlVIeavpe--~------------~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~----~~-~~~r~ig~  441 (721)
                      ++++||+||.+..-  .            ....+++.+.+.++. ++.+++..  +.|+..+...    .. .+.|++|+
T Consensus        67 a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~~~viv~--SNPv~~~~~~~~~~~~~p~~rviG~  143 (303)
T 1o6z_A           67 DTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHN-DDYISLTT--SNPVDLLNRHLYEAGDRSREQVIGF  143 (303)
T ss_dssp             GGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTC-SCCEEEEC--CSSHHHHHHHHHHHSSSCGGGEEEC
T ss_pred             HhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEe--CChHHHHHHHHHHHcCCCHHHeeec
Confidence            89999999988742  1            135566666777765 45555543  3344333222    22 34577765

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=97.77  E-value=9.7e-06  Score=83.41  Aligned_cols=91  Identities=14%  Similarity=0.162  Sum_probs=63.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|+|||+|.||.+++..|.+.|++|+++|+++++++...+           .           . .+...+++ +.+++
T Consensus       130 ~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~-----------~-----------~-g~~~~~~~~~~~~~  186 (275)
T 2hk9_A          130 KSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQ-----------K-----------F-PLEVVNSPEEVIDK  186 (275)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTT-----------T-----------S-CEEECSCGGGTGGG
T ss_pred             CEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHH-----------H-----------c-CCeeehhHHhhhcC
Confidence            58999999999999999999999999999999987655311           0           0 12333344 56789


Q ss_pred             CCEEEEcccCChHHH-HHHHHHHHhhCCCCeEEEecCC
Q 004972          385 VDMVIEAVIESVPLK-QKIFSELEKACPPHCILATNTS  421 (721)
Q Consensus       385 aDlVIeavpe~~~~k-~~v~~~l~~~~~~~~ii~s~ts  421 (721)
                      +|+||.|+|...... ...+.  ...+++++++++...
T Consensus       187 aDiVi~atp~~~~~~~~~~i~--~~~l~~g~~viDv~~  222 (275)
T 2hk9_A          187 VQVIVNTTSVGLKDEDPEIFN--YDLIKKDHVVVDIIY  222 (275)
T ss_dssp             CSEEEECSSTTSSTTCCCSSC--GGGCCTTSEEEESSS
T ss_pred             CCEEEEeCCCCCCCCCCCCCC--HHHcCCCCEEEEcCC
Confidence            999999998554210 01111  245678888877655

>4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A

Probab=97.75  E-value=6.7e-05  Score=72.64  Aligned_cols=141  Identities=15%  Similarity=0.117  Sum_probs=94.6

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEE--EEEeCCCC----CcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCc
Q 004972           27 ALAIPIVAGLKDKFEEATSRDDVKAI--VLTGNGGR----FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKP  100 (721)
Q Consensus        27 al~~~~~~~l~~~l~~~~~~~~v~~v--Vltg~g~~----F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p  100 (721)
                      .++.++.+.+...|..++.++..+-|  .|.+.|..    ...-+|+                .....++ +.+...+.|
T Consensus        36 ~I~d~~a~~iiaqLl~L~~ed~~k~I~lyINSpG~~~~~~~~~~G~v----------------~aglaIy-d~m~~~~~~   98 (205)
T 4gm2_A           36 PIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGI----------------TDVISIV-DVINYISSD   98 (205)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHCTTCCEEEEEEECTTEETTEESCTTHH----------------HHHHHHH-HHHHHSSSC
T ss_pred             EEcHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCcCCCCCCCCH----------------HHHHHHH-HHHHhcCCC
Confidence            48899999999999988854433333  33444411    0000111                1223555 668889999


Q ss_pred             EEEEECCcccccchHhhhhcC--EEEeeCCceEeCcccccCcccc--c-----------------cccccc--cCHHHHH
Q 004972          101 IVAAVEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPG--T-----------------QRLPRL--VGLSKAI  157 (721)
Q Consensus       101 ~Iaav~G~a~GgG~~lalacD--~ria~~~a~~~~pe~~~Gl~P~--~-----------------~~l~r~--~G~~~a~  157 (721)
                      |...+-|.|.+.|.-|++++|  .|++.+++++.+....-|..-|  +                 ..+.+.  .......
T Consensus        99 V~t~~~G~AaS~as~il~aG~~gkR~~lP~a~iMIHqP~~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~  178 (205)
T 4gm2_A           99 VYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSIIPFNQATNIEIQNKEIMNTKKKVIEIISKNTEKDTNVIS  178 (205)
T ss_dssp             EEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEEECCCCCCCCSSCCSCHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred             EEEEEEeeehhHHHHHHhcCCCCCEEecCCCEEEEecCcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence            999999999999999999999  5999999999876665443122  1                 011111  1233444


Q ss_pred             HHHHcCCCcCHHHHHHcCCccEEcCCc
Q 004972          158 EMMLLSKSITSEEGWKLGLIDAVVTSE  184 (721)
Q Consensus       158 ~l~ltg~~~~a~eA~~~Glv~~vv~~~  184 (721)
                      +++-....++|+||+++||||+|++.+
T Consensus       179 ~~m~rd~~msa~EA~eyGlID~V~~~e  205 (205)
T 4gm2_A          179 NVLERDKYFNADEAVDFKLIDHILEKE  205 (205)
T ss_dssp             HHTTSCEEEEHHHHHHTTSCSEECCC-
T ss_pred             HHhcCCcccCHHHHHHcCCccEeecCC
Confidence            555566679999999999999998653

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.72  E-value=0.00019  Score=65.56  Aligned_cols=39  Identities=18%  Similarity=0.225  Sum_probs=36.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  344 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  344 (721)
                      ++|.|+|+|.+|..+|..|.+.|++|+++|++++.++.+
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~   46 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDEL   46 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHH
Confidence            579999999999999999999999999999999987765

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=97.72  E-value=8.3e-05  Score=78.31  Aligned_cols=102  Identities=18%  Similarity=0.244  Sum_probs=65.8

Q ss_pred             ceeEEEEc-CCCCcHHHHHHHHHCC--CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCcee---ccC
Q 004972          305 VRKVAVIG-GGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG---VLD  378 (721)
Q Consensus       305 ~~kI~VIG-~G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~  378 (721)
                      .+||+|+| +|.+|.+++..|+..|  .+|+++|++++. ..+.    +     +.....        ...+..   +++
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~-~~~~----d-----L~~~~~--------~~~v~~~~~t~d   69 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAP-GVTA----D-----ISHMDT--------GAVVRGFLGQQQ   69 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHH-HHHH----H-----HHTSCS--------SCEEEEEESHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcH-hHHH----H-----hhcccc--------cceEEEEeCCCC
Confidence            46899999 7999999999999998  799999998761 1111    0     111100        012333   445


Q ss_pred             c-cccCCCCEEEEcccC--C------------hHHHHHHHHHHHhhCCCCeEEEecCCCCCHHH
Q 004972          379 Y-SEFKDVDMVIEAVIE--S------------VPLKQKIFSELEKACPPHCILATNTSTIDLNI  427 (721)
Q Consensus       379 ~-~~l~~aDlVIeavpe--~------------~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~  427 (721)
                      + +++++||+||.++.-  .            ....+.+.+.+.++. ++.+++..|  .|+..
T Consensus        70 ~~~al~gaDvVi~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~-p~~~viv~S--NPv~~  130 (326)
T 1smk_A           70 LEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCC-PRAIVNLIS--NPVNS  130 (326)
T ss_dssp             HHHHHTTCSEEEECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHC-TTSEEEECC--SSHHH
T ss_pred             HHHHcCCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEEC--CchHH
Confidence            5 668999999999842  1            145666777777776 455554433  44443

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=97.72  E-value=6.5e-05  Score=68.57  Aligned_cols=81  Identities=21%  Similarity=0.189  Sum_probs=58.7

Q ss_pred             ceeEEEEcC----CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcc
Q 004972          305 VRKVAVIGG----GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS  380 (721)
Q Consensus       305 ~~kI~VIG~----G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  380 (721)
                      -++|+|||+    |.||..++..|.+.|++|+.+|++.+.+                             ..+....+++
T Consensus        14 p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i-----------------------------~G~~~~~s~~   64 (138)
T 1y81_A           14 FRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----------------------------EGLKCYRSVR   64 (138)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----------------------------TTEECBSSGG
T ss_pred             CCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeE-----------------------------CCeeecCCHH
Confidence            468999999    9999999999999999866666543211                             1234445553


Q ss_pred             c-cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEE
Q 004972          381 E-FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA  417 (721)
Q Consensus       381 ~-l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~  417 (721)
                      + .+.+|+||.++|  .+...+++.++.+ ...+.+++
T Consensus        65 el~~~vDlvii~vp--~~~v~~v~~~~~~-~g~~~i~~   99 (138)
T 1y81_A           65 ELPKDVDVIVFVVP--PKVGLQVAKEAVE-AGFKKLWF   99 (138)
T ss_dssp             GSCTTCCEEEECSC--HHHHHHHHHHHHH-TTCCEEEE
T ss_pred             HhCCCCCEEEEEeC--HHHHHHHHHHHHH-cCCCEEEE
Confidence            3 467999999999  6777788877665 44556554

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.72  E-value=0.00014  Score=69.65  Aligned_cols=39  Identities=18%  Similarity=0.201  Sum_probs=35.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHC-CCceEEEeCCHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILN-NIYVVLKEVNSEYLLKG  344 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~  344 (721)
                      ++|.|+|+|.||..+|..|.+. |++|+++|+++++++.+
T Consensus        40 ~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~   79 (183)
T 3c85_A           40 AQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQH   79 (183)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHH
Confidence            4799999999999999999999 99999999999887654

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=97.67  E-value=6.2e-06  Score=87.12  Aligned_cols=100  Identities=16%  Similarity=0.049  Sum_probs=68.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|+|||+|.||..+|+.+...|++|++||++++..  .            +             ..+... ++ +.+++
T Consensus       147 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~------------~-------------~~~~~~-~l~ell~~  198 (331)
T 1xdw_A          147 CTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKG--I------------E-------------DYCTQV-SLDEVLEK  198 (331)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS--C------------T-------------TTCEEC-CHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccHH--H------------H-------------hccccC-CHHHHHhh
Confidence            589999999999999999999999999999986531  0            0             001112 34 55689


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS  433 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~  433 (721)
                      ||+|+.++|.+.+...-+-++..+.++++++++..+.+  +....+.+.+.
T Consensus       199 aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~  249 (331)
T 1xdw_A          199 SDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVE  249 (331)
T ss_dssp             CSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             CCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECCCcccccHHHHHHHHH
Confidence            99999999966544332224555678999988754443  33345555553

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.65  E-value=0.00014  Score=67.78  Aligned_cols=38  Identities=24%  Similarity=0.283  Sum_probs=35.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLK  343 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~  343 (721)
                      ++|.|+|+|.+|..++..|...|++|+++|++++.++.
T Consensus        20 ~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~   57 (155)
T 2g1u_A           20 KYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHR   57 (155)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGG
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHH
Confidence            58999999999999999999999999999999987544

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=97.63  E-value=8.3e-05  Score=78.44  Aligned_cols=102  Identities=15%  Similarity=0.122  Sum_probs=67.4

Q ss_pred             ceeEEEEcC-CCCcHHHHHHHHHCCC-------ceEEEeCC----HHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcC
Q 004972          305 VRKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVN----SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKM  372 (721)
Q Consensus       305 ~~kI~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  372 (721)
                      .+||+|+|+ |.+|++++..|+..|+       +|+++|++    +++++.....+        .....      .....
T Consensus         5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl--------~~~~~------~~~~~   70 (329)
T 1b8p_A            5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEI--------DDCAF------PLLAG   70 (329)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHH--------HTTTC------TTEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHH--------hhhcc------cccCc
Confidence            368999998 9999999999999886       89999999    55443211111        11100      01234


Q ss_pred             ceeccCc-cccCCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCeEEEecC
Q 004972          373 LKGVLDY-SEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT  420 (721)
Q Consensus       373 i~~~~~~-~~l~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~t  420 (721)
                      +..+++. +++++||+||.+..-              +..+.+.+.+.+.+++.++++|+..|
T Consensus        71 i~~~~~~~~al~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~S  133 (329)
T 1b8p_A           71 MTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVG  133 (329)
T ss_dssp             EEEESSHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred             EEEecCcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcc
Confidence            5556664 779999999987631              22456667778888875665555433

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=97.62  E-value=5.9e-05  Score=69.50  Aligned_cols=101  Identities=12%  Similarity=0.018  Sum_probs=66.3

Q ss_pred             eeEEEEcC----CCCcHHHHHHHHHCCCceEEEeCCH--HHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc
Q 004972          306 RKVAVIGG----GLMGSGIATAHILNNIYVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  379 (721)
Q Consensus       306 ~kI~VIG~----G~mG~~iA~~la~~G~~V~l~d~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  379 (721)
                      ++|+|||+    |.||..++..|.+.|++|+.+|++.  +.+                             ..+....++
T Consensus        14 ~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i-----------------------------~G~~~~~sl   64 (145)
T 2duw_A           14 RTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTL-----------------------------LGQQGYATL   64 (145)
T ss_dssp             CCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEE-----------------------------TTEECCSST
T ss_pred             CEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCccccccc-----------------------------CCeeccCCH
Confidence            57999999    8999999999999999977777654  211                             123444455


Q ss_pred             cc-cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccC-CCCcEEE
Q 004972          380 SE-FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTS-SQDRIIG  440 (721)
Q Consensus       380 ~~-l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~-~~~r~ig  440 (721)
                      ++ ...+|+||.++|  .+...+++.++.+ .....+++. +++. ..++.+... ..-+++|
T Consensus        65 ~el~~~~Dlvii~vp--~~~v~~v~~~~~~-~g~~~i~i~-~~~~-~~~l~~~a~~~Gi~~ig  122 (145)
T 2duw_A           65 ADVPEKVDMVDVFRN--SEAAWGVAQEAIA-IGAKTLWLQ-LGVI-NEQAAVLAREAGLSVVM  122 (145)
T ss_dssp             TTCSSCCSEEECCSC--STHHHHHHHHHHH-HTCCEEECC-TTCC-CHHHHHHHHTTTCEEEC
T ss_pred             HHcCCCCCEEEEEeC--HHHHHHHHHHHHH-cCCCEEEEc-CChH-HHHHHHHHHHcCCEEEc
Confidence            33 467899999999  4666677777665 345566654 4444 334444332 3345554

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.59  E-value=0.00026  Score=64.31  Aligned_cols=39  Identities=26%  Similarity=0.264  Sum_probs=35.4

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHH
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLK  343 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~  343 (721)
                      +++|.|+|+|.+|..++..|.+.|++|+++|++++.++.
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~   44 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNA   44 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHT
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            467999999999999999999999999999999877554

>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*

Probab=97.59  E-value=0.00011  Score=81.18  Aligned_cols=75  Identities=13%  Similarity=0.192  Sum_probs=49.8

Q ss_pred             eeEEEEcCCCCcHHH--HHHHHH----C--CCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceecc
Q 004972          306 RKVAVIGGGLMGSGI--ATAHIL----N--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL  377 (721)
Q Consensus       306 ~kI~VIG~G~mG~~i--A~~la~----~--G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  377 (721)
                      +||+|||+|..|...  ...++.    .  +.+|+++|+++++++.....+++.....   +         .--++..++
T Consensus         1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~~---~---------~~~~i~~t~   68 (477)
T 3u95_A            1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKYVEEL---N---------SPVKVVKTE   68 (477)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHHHHHH---T---------CCCEEEEES
T ss_pred             CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHHHHHc---C---------CCeEEEEeC
Confidence            489999999987553  222332    2  3479999999998876543333322211   1         012477788


Q ss_pred             Cc-cccCCCCEEEEcc
Q 004972          378 DY-SEFKDVDMVIEAV  392 (721)
Q Consensus       378 ~~-~~l~~aDlVIeav  392 (721)
                      |. +++++||+||.++
T Consensus        69 d~~eAl~gAD~Vi~~~   84 (477)
T 3u95_A           69 SLDEAIEGADFIINTA   84 (477)
T ss_dssp             CHHHHHTTCSEEEECC
T ss_pred             CHHHHhCCCCEEEECc
Confidence            88 6789999999886

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=97.57  E-value=0.00017  Score=74.78  Aligned_cols=88  Identities=22%  Similarity=0.275  Sum_probs=60.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|+|||+|.||..+|..+...|.+|+++|++++..+.+.           +.|.          ..+. ..++ +.+++
T Consensus       156 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~-----------~~g~----------~~~~-~~~l~~~l~~  213 (293)
T 3d4o_A          156 ANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIA-----------EMGM----------EPFH-ISKAAQELRD  213 (293)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-----------HTTS----------EEEE-GGGHHHHTTT
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-----------HCCC----------eecC-hhhHHHHhcC
Confidence            5899999999999999999999999999999987654321           1110          0010 1233 45789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  420 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t  420 (721)
                      +|+||.++|...-..     +....++++.++++.+
T Consensus       214 aDvVi~~~p~~~i~~-----~~l~~mk~~~~lin~a  244 (293)
T 3d4o_A          214 VDVCINTIPALVVTA-----NVLAEMPSHTFVIDLA  244 (293)
T ss_dssp             CSEEEECCSSCCBCH-----HHHHHSCTTCEEEECS
T ss_pred             CCEEEECCChHHhCH-----HHHHhcCCCCEEEEec
Confidence            999999999533211     2233567777776543

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=97.55  E-value=9.3e-05  Score=77.03  Aligned_cols=88  Identities=19%  Similarity=0.212  Sum_probs=60.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|+|||+|.||..+|..+...|.+|++||+++++.+...           +.|.          ..+. ..++ +.+++
T Consensus       158 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~-----------~~g~----------~~~~-~~~l~~~l~~  215 (300)
T 2rir_A          158 SQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARIT-----------EMGL----------VPFH-TDELKEHVKD  215 (300)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-----------HTTC----------EEEE-GGGHHHHSTT
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HCCC----------eEEc-hhhHHHHhhC
Confidence            5899999999999999999999999999999987654321           1110          0011 1233 45789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  420 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t  420 (721)
                      ||+||.++|...-.     ++....+++++++++.+
T Consensus       216 aDvVi~~~p~~~i~-----~~~~~~mk~g~~lin~a  246 (300)
T 2rir_A          216 IDICINTIPSMILN-----QTVLSSMTPKTLILDLA  246 (300)
T ss_dssp             CSEEEECCSSCCBC-----HHHHTTSCTTCEEEECS
T ss_pred             CCEEEECCChhhhC-----HHHHHhCCCCCEEEEEe
Confidence            99999999953221     12334567777776443

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=97.54  E-value=0.00033  Score=79.67  Aligned_cols=141  Identities=18%  Similarity=0.136  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCC-CCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEECCccc
Q 004972           32 IVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG-FDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLAL  110 (721)
Q Consensus        32 ~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG-~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~  110 (721)
                      ...++.+.|+.+.+|+.++.|+|.-.    |.| +++....             ...+.+ +.+....|||||.+++ +.
T Consensus        71 ~~~~i~~~L~~a~~d~~ik~I~L~in----spGgG~v~~~~-------------~I~~~i-~~~k~~gkpvva~~~~-aa  131 (593)
T 3bf0_A           71 SLFDIVNTIRQAKDDRNITGIVMDLK----NFAGGDQPSMQ-------------YIGKAL-KEFRDSGKPVYAVGEN-YS  131 (593)
T ss_dssp             EHHHHHHHHHHHHHCTTCCCEEEECT----EEEECCHHHHH-------------HHHHHH-HHHHHTTCCEEEEESC-EE
T ss_pred             CHHHHHHHHHHHHhCCCceEEEEEeC----CCCCCcHHHHH-------------HHHHHH-HHHHhcCCeEEEEEcc-ch
Confidence            46778899999999999999999753    223 4443221             112333 3355557999999876 66


Q ss_pred             ccchHhhhhcCEEEeeCCceEeCccccc------------Cccc-----c------c------------cccc-------
Q 004972          111 GGGLELAMGCHARIAAPKTQLGLPELTL------------GVIP-----G------T------------QRLP-------  148 (721)
Q Consensus       111 GgG~~lalacD~ria~~~a~~~~pe~~~------------Gl~P-----~------~------------~~l~-------  148 (721)
                      .+|+-|+.+||.+++.+.+.++...+..            |+-+     |      .            ..+.       
T Consensus       132 s~~y~lAsaad~i~~~P~~~vg~~g~~~~~~~~~~~l~klGi~~~~~~~G~~K~a~ep~~r~~ms~~~re~~~~~l~~~~  211 (593)
T 3bf0_A          132 QGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELW  211 (593)
T ss_dssp             HHHHHHHTTSSEEEECTTCCEECCCCBCCEEECHHHHHHTTCEEEEEEECTTCGGGHHHHCSSCCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhCCEEEECCCceEEEecccccccCHHHHHHHcCCeEEEEEeecccCCCCcccCCCCCHHHHHHHHHHHHHHH
Confidence            7889999999999999999998876643            3211     0      0            0000       


Q ss_pred             ----------cccCHHHHHHHHHc-------CCCcCHHHHHHcCCccEEcCCchHHHHHH
Q 004972          149 ----------RLVGLSKAIEMMLL-------SKSITSEEGWKLGLIDAVVTSEELLKVSR  191 (721)
Q Consensus       149 ----------r~~G~~~a~~l~lt-------g~~~~a~eA~~~Glv~~vv~~~~l~~~a~  191 (721)
                                |-+......+++-.       +..++|++|++.||||++...+++.....
T Consensus       212 ~~~~~~va~~Rg~~~e~l~~~~d~~~~~l~~~~~~ta~~A~~~GLvD~i~~~~e~~~~l~  271 (593)
T 3bf0_A          212 QNYLNTVAANRQIPAEQVFPGAQGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALT  271 (593)
T ss_dssp             HHHHHHHHHHHTSCHHHHCCHHHHHHHHHHTTTTCHHHHHHHTTSSSEECCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHhhhhhhhhhcCCccHHHHHHCCCCCCCCCHHHHHHHHH
Confidence                      11222223333333       78999999999999999997666655443

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.48  E-value=0.00057  Score=67.38  Aligned_cols=95  Identities=16%  Similarity=0.157  Sum_probs=60.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCC-HHHHHHhhcCceeccCccccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT-QDKANNALKMLKGVLDYSEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~~~~~l~~  384 (721)
                      +||.|+|+|.+|..+|..|.+.|++|+++|++++.++...+.    ....+-.|-.+ ....           ....+.+
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~----~~~~~i~gd~~~~~~l-----------~~a~i~~   65 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKK----LKATIIHGDGSHKEIL-----------RDAEVSK   65 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHH----SSSEEEESCTTSHHHH-----------HHHTCCT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH----cCCeEEEcCCCCHHHH-----------HhcCccc
Confidence            479999999999999999999999999999999987764211    00000011000 0000           0023688


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhh-CCCCeEEE
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKA-CPPHCILA  417 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~-~~~~~ii~  417 (721)
                      ||+||.+++++.  ...++..+.+. .+...+++
T Consensus        66 ad~vi~~~~~d~--~n~~~~~~a~~~~~~~~iia   97 (218)
T 3l4b_C           66 NDVVVILTPRDE--VNLFIAQLVMKDFGVKRVVS   97 (218)
T ss_dssp             TCEEEECCSCHH--HHHHHHHHHHHTSCCCEEEE
T ss_pred             CCEEEEecCCcH--HHHHHHHHHHHHcCCCeEEE
Confidence            999999998543  33444444444 45555554

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=97.42  E-value=0.0003  Score=73.31  Aligned_cols=98  Identities=17%  Similarity=0.223  Sum_probs=62.8

Q ss_pred             eeEEEEc-CCCCcHHHHHHHHHC-C--CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCcee---ccC
Q 004972          306 RKVAVIG-GGLMGSGIATAHILN-N--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG---VLD  378 (721)
Q Consensus       306 ~kI~VIG-~G~mG~~iA~~la~~-G--~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~  378 (721)
                      +||+||| +|.+|.+++..|+.. +  .+++++|+++ .++.-...+        .....        ...+..   +++
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~a~Dl--------~~~~~--------~~~v~~~~~~~~   63 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDL--------SHIPT--------AVKIKGFSGEDA   63 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHHHHHH--------HTSCS--------SEEEEEECSSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhHHHHh--------hCCCC--------CceEEEecCCCc
Confidence            4899999 899999999999875 5  4899999987 332111111        11100        012332   245


Q ss_pred             ccccCCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCeEEEecCC
Q 004972          379 YSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTS  421 (721)
Q Consensus       379 ~~~l~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts  421 (721)
                      ++++++||+||.+..-              +..+.+++.+.+.++++ +++++..|.
T Consensus        64 ~~~~~~aDivii~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p-~a~vlvvtN  119 (312)
T 3hhp_A           64 TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCP-KACIGIITN  119 (312)
T ss_dssp             HHHHTTCSEEEECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHCT-TSEEEECSS
T ss_pred             HHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CcEEEEecC
Confidence            6889999999998732              33455666677888764 555554443

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=97.40  E-value=0.00022  Score=72.65  Aligned_cols=64  Identities=17%  Similarity=0.230  Sum_probs=49.7

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCCC
Q 004972          307 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV  385 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~a  385 (721)
                      +|+|||+|.||.+++..|...|++|+++|+++++++...+.+          +             .. .+++ +. +++
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~----------~-------------~~-~~~~~~~-~~~  172 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEF----------G-------------LR-AVPLEKA-REA  172 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHH----------T-------------CE-ECCGGGG-GGC
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh----------c-------------cc-hhhHhhc-cCC
Confidence            799999999999999999999999999999998766542210          1             01 1233 44 889


Q ss_pred             CEEEEcccCC
Q 004972          386 DMVIEAVIES  395 (721)
Q Consensus       386 DlVIeavpe~  395 (721)
                      |+||.|+|..
T Consensus       173 Divi~~tp~~  182 (263)
T 2d5c_A          173 RLLVNATRVG  182 (263)
T ss_dssp             SEEEECSSTT
T ss_pred             CEEEEccCCC
Confidence            9999999954

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=97.39  E-value=0.00031  Score=70.39  Aligned_cols=87  Identities=20%  Similarity=0.142  Sum_probs=57.1

Q ss_pred             CceeEEEEcCCCCcHHHHHHHHHCCCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcccc
Q 004972          304 GVRKVAVIGGGLMGSGIATAHILNNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  382 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l  382 (721)
                      .|.||+|+|+|.||..++..+...+.+++ ++|++++.                .             ..+..+++++.+
T Consensus         2 ~MmkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~----------------~-------------~gv~v~~dl~~l   52 (243)
T 3qy9_A            2 ASMKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKA----------------T-------------TPYQQYQHIADV   52 (243)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC-------------------------------CCSCBCSCTTTC
T ss_pred             CceEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccc----------------c-------------CCCceeCCHHHH
Confidence            36799999999999999999998877765 47887652                0             124445666443


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH
Q 004972          383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN  426 (721)
Q Consensus       383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~  426 (721)
                      .++|+||++..  ++.....   +.  +..+.-+++.|+++...
T Consensus        53 ~~~DVvIDft~--p~a~~~~---~~--l~~g~~vVigTTG~s~e   89 (243)
T 3qy9_A           53 KGADVAIDFSN--PNLLFPL---LD--EDFHLPLVVATTGEKEK   89 (243)
T ss_dssp             TTCSEEEECSC--HHHHHHH---HT--SCCCCCEEECCCSSHHH
T ss_pred             hCCCEEEEeCC--hHHHHHH---HH--HhcCCceEeCCCCCCHH
Confidence            39999998775  4332233   22  55555555666666543

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=97.38  E-value=0.00046  Score=72.74  Aligned_cols=100  Identities=10%  Similarity=-0.010  Sum_probs=62.9

Q ss_pred             CCceeEEEEcCCCCcHHHHHHHHHC-CCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-
Q 004972          303 RGVRKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  379 (721)
Q Consensus       303 ~~~~kI~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-  379 (721)
                      +++.||+|||+|.||..++..+.+. +.+|+ ++|+++++++...+.                      .+.....+++ 
T Consensus         3 m~~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~----------------------~~~~~~~~~~~   60 (330)
T 3e9m_A            3 LDKIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKE----------------------LAIPVAYGSYE   60 (330)
T ss_dssp             CCCEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHH----------------------TTCCCCBSSHH
T ss_pred             CCeEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHH----------------------cCCCceeCCHH
Confidence            4456899999999999999999885 67776 789999886654221                      0111234555 


Q ss_pred             cccC--CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHH
Q 004972          380 SEFK--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV  428 (721)
Q Consensus       380 ~~l~--~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l  428 (721)
                      +.++  ++|+|++|+|....  .++.....+.  ..-+++...-+....+.
T Consensus        61 ~ll~~~~~D~V~i~tp~~~h--~~~~~~al~~--gk~vl~EKP~~~~~~e~  107 (330)
T 3e9m_A           61 ELCKDETIDIIYIPTYNQGH--YSAAKLALSQ--GKPVLLEKPFTLNAAEA  107 (330)
T ss_dssp             HHHHCTTCSEEEECCCGGGH--HHHHHHHHHT--TCCEEECSSCCSSHHHH
T ss_pred             HHhcCCCCCEEEEcCCCHHH--HHHHHHHHHC--CCeEEEeCCCCCCHHHH
Confidence            3343  79999999995543  2333333222  12255544445555443

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=97.35  E-value=0.0009  Score=71.24  Aligned_cols=72  Identities=14%  Similarity=0.187  Sum_probs=53.6

Q ss_pred             CCceeEEEEcCCCCcHHHHHHHHHC--CCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc
Q 004972          303 RGVRKVAVIGGGLMGSGIATAHILN--NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  379 (721)
Q Consensus       303 ~~~~kI~VIG~G~mG~~iA~~la~~--G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  379 (721)
                      +++.||+|||+|.||...+..+.+.  +++|+ ++|+++++++...+.                      . .+...+++
T Consensus        11 ~~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~----------------------~-~~~~~~~~   67 (354)
T 3q2i_A           11 DRKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVER----------------------T-GARGHASL   67 (354)
T ss_dssp             SSCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH----------------------H-CCEEESCH
T ss_pred             CCcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHH----------------------c-CCceeCCH
Confidence            4567999999999999999999887  67765 899999987664321                      1 13456666


Q ss_pred             c-ccC--CCCEEEEcccCChH
Q 004972          380 S-EFK--DVDMVIEAVIESVP  397 (721)
Q Consensus       380 ~-~l~--~aDlVIeavpe~~~  397 (721)
                      + .++  ++|+|++|+|....
T Consensus        68 ~~ll~~~~~D~V~i~tp~~~h   88 (354)
T 3q2i_A           68 TDMLAQTDADIVILTTPSGLH   88 (354)
T ss_dssp             HHHHHHCCCSEEEECSCGGGH
T ss_pred             HHHhcCCCCCEEEECCCcHHH
Confidence            3 343  79999999995443

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=97.35  E-value=0.00037  Score=73.49  Aligned_cols=104  Identities=15%  Similarity=0.168  Sum_probs=67.2

Q ss_pred             ceeEEEEcC-CCCcHHHHHHHHHCCC-------ceEEEeCCHHH--HHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCce
Q 004972          305 VRKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSEY--LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK  374 (721)
Q Consensus       305 ~~kI~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~  374 (721)
                      --||+|+|+ |.+|.+++..|+....       ++.++|+++..  ++.....+..        ...      .....+.
T Consensus        24 ~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~--------~~~------~~~~~~~   89 (345)
T 4h7p_A           24 AVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELED--------CAF------PLLDKVV   89 (345)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHH--------TTC------TTEEEEE
T ss_pred             CCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhh--------cCc------cCCCcEE
Confidence            359999997 9999999999998754       79999997643  2211111111        000      0112344


Q ss_pred             eccCc-cccCCCCEEEEcc--cC------------ChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972          375 GVLDY-SEFKDVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILATNTST  422 (721)
Q Consensus       375 ~~~~~-~~l~~aDlVIeav--pe------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~  422 (721)
                      .+++. +++++||+||.+.  |-            |..+.+++.+.|.++++++++|+..|..
T Consensus        90 ~~~~~~~a~~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNP  152 (345)
T 4h7p_A           90 VTADPRVAFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNP  152 (345)
T ss_dssp             EESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred             EcCChHHHhCCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCC
Confidence            44444 7799999999865  31            3456666777788888888866544443

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=97.34  E-value=0.00077  Score=70.45  Aligned_cols=102  Identities=19%  Similarity=0.125  Sum_probs=64.6

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCC--ceEEEeC--CHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccC--
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEV--NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD--  378 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~--~V~l~d~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--  378 (721)
                      +||+|+|+ |.+|.+++..|+..|+  ++.++|+  ++++++.....+.+.. ..  .+.         ...+..+++  
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~-~~--~~~---------~~~i~~~~d~l   68 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDAL-AG--TRS---------DANIYVESDEN   68 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHH-TT--SCC---------CCEEEEEETTC
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhH-Hh--cCC---------CeEEEeCCcch
Confidence            38999999 9999999999998885  6999999  7765443222222211 00  000         012333343  


Q ss_pred             ccccCCCCEEEEcc--cC------------ChHHHHHHHHHHHhhCCCCeEEEecCC
Q 004972          379 YSEFKDVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILATNTS  421 (721)
Q Consensus       379 ~~~l~~aDlVIeav--pe------------~~~~k~~v~~~l~~~~~~~~ii~s~ts  421 (721)
                      .+++++||+||.+.  |.            +....+.+.+.+.++.  +.+++..|+
T Consensus        69 ~~al~gaD~Vi~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~--~~~vlv~SN  123 (313)
T 1hye_A           69 LRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC--DTKIFVITN  123 (313)
T ss_dssp             GGGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC--CCEEEECSS
T ss_pred             HHHhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC--CeEEEEecC
Confidence            57899999999876  21            2345566667777777  555554443

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=97.32  E-value=0.00046  Score=72.70  Aligned_cols=100  Identities=20%  Similarity=0.131  Sum_probs=70.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|||||.|.+|..+|..+..-|.+|+.||+.......             +.             .... .++ +.++.
T Consensus       142 ~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~-------------~~-------------~~~~-~~l~ell~~  194 (334)
T 3kb6_A          142 LTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKREDLK-------------EK-------------GCVY-TSLDELLKE  194 (334)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHH-------------HT-------------TCEE-CCHHHHHHH
T ss_pred             cEEEEECcchHHHHHHHhhcccCceeeecCCccchhhh-------------hc-------------Ccee-cCHHHHHhh
Confidence            58999999999999999999999999999987543111             01             1222 233 55789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCC-C--CCHHHHhcccC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-T--IDLNIVGEKTS  433 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts-~--~~i~~l~~~~~  433 (721)
                      ||+|+.++|-+.+.+.-+=++....++++++|+ |++ +  +.-..+.+.+.
T Consensus       195 sDivslh~Plt~~T~~li~~~~l~~mk~~a~lI-N~aRG~iVde~aL~~aL~  245 (334)
T 3kb6_A          195 SDVISLHVPYTKETHHMINEERISLMKDGVYLI-NTARGKVVDTDALYRAYQ  245 (334)
T ss_dssp             CSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEE-ECSCGGGBCHHHHHHHHH
T ss_pred             CCEEEEcCCCChhhccCcCHHHHhhcCCCeEEE-ecCccccccHHHHHHHHH
Confidence            999999999776654433355566789999886 555 3  33345655554

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=97.31  E-value=0.00015  Score=79.92  Aligned_cols=88  Identities=17%  Similarity=0.152  Sum_probs=62.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|+|||.|.||.++|..+...|.+|++||+++.....+.           ..|             ... .++ +.+++
T Consensus       278 ktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~-----------~~G-------------~~~-~~l~ell~~  332 (494)
T 3d64_A          278 KIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAA-----------MEG-------------YRV-VTMEYAADK  332 (494)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHH-----------TTT-------------CEE-CCHHHHTTT
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHH-----------HcC-------------CEe-CCHHHHHhc
Confidence            5899999999999999999999999999999987632221           111             122 234 56889


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  422 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  422 (721)
                      ||+||.++...--+.    ++..+.++++++|+..+++
T Consensus       333 aDiVi~~~~t~~lI~----~~~l~~MK~gAilINvgrg  366 (494)
T 3d64_A          333 ADIFVTATGNYHVIN----HDHMKAMRHNAIVCNIGHF  366 (494)
T ss_dssp             CSEEEECSSSSCSBC----HHHHHHCCTTEEEEECSSS
T ss_pred             CCEEEECCCcccccC----HHHHhhCCCCcEEEEcCCC
Confidence            999999983221121    3344567899988765554

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=97.28  E-value=0.00013  Score=80.03  Aligned_cols=96  Identities=16%  Similarity=0.151  Sum_probs=65.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|+|||.|.||.++|..+...|.+|++||+++.....+.           ..|             ... .++ +.+++
T Consensus       258 ktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~-----------~~g-------------~~~-~~l~ell~~  312 (479)
T 1v8b_A          258 KIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAV-----------MEG-------------FNV-VTLDEIVDK  312 (479)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHH-----------TTT-------------CEE-CCHHHHTTT
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHH-----------HcC-------------CEe-cCHHHHHhc
Confidence            5899999999999999999999999999999987643321           111             122 234 56889


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC---CCHHHHhc
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST---IDLNIVGE  430 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~---~~i~~l~~  430 (721)
                      ||+||.+.. ...+.   -.+..+.++++++|+..+++   +....+.+
T Consensus       313 aDiVi~~~~-t~~lI---~~~~l~~MK~gailiNvgrg~~EId~~aL~~  357 (479)
T 1v8b_A          313 GDFFITCTG-NVDVI---KLEHLLKMKNNAVVGNIGHFDDEIQVNELFN  357 (479)
T ss_dssp             CSEEEECCS-SSSSB---CHHHHTTCCTTCEEEECSSTTTSBCHHHHHT
T ss_pred             CCEEEECCC-hhhhc---CHHHHhhcCCCcEEEEeCCCCccccchhhhc
Confidence            999999963 22211   12344567899998765554   23445544

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=97.27  E-value=0.00099  Score=70.59  Aligned_cols=96  Identities=17%  Similarity=0.185  Sum_probs=62.6

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHC-CCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cc
Q 004972          305 VRKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  381 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  381 (721)
                      +.||+|||+|.||..++..+.+. +++|+ ++|+++++++...+                      ..+ ....+++ +.
T Consensus         4 ~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~----------------------~~g-~~~~~~~~~~   60 (344)
T 3euw_A            4 TLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAE----------------------ANG-AEAVASPDEV   60 (344)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHH----------------------TTT-CEEESSHHHH
T ss_pred             ceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHH----------------------HcC-CceeCCHHHH
Confidence            46899999999999999999886 67766 89999988665321                      112 3445666 44


Q ss_pred             cC--CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHH
Q 004972          382 FK--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI  427 (721)
Q Consensus       382 l~--~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~  427 (721)
                      ++  ++|+|++|+|....  .++.....+.  ...+++....+....+
T Consensus        61 l~~~~~D~V~i~tp~~~h--~~~~~~al~~--gk~v~~EKP~~~~~~~  104 (344)
T 3euw_A           61 FARDDIDGIVIGSPTSTH--VDLITRAVER--GIPALCEKPIDLDIEM  104 (344)
T ss_dssp             TTCSCCCEEEECSCGGGH--HHHHHHHHHT--TCCEEECSCSCSCHHH
T ss_pred             hcCCCCCEEEEeCCchhh--HHHHHHHHHc--CCcEEEECCCCCCHHH
Confidence            55  79999999995443  3333333322  2235554444555544

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=97.26  E-value=0.00046  Score=73.19  Aligned_cols=96  Identities=20%  Similarity=0.195  Sum_probs=62.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHH--CCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc
Q 004972          306 RKVAVIGGGLMGSGIATAHIL--NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  382 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  382 (721)
                      ++|+|||+|.||..++..+..  ...+|++||++++++++..+.+..      ..| +          .+...++. +.+
T Consensus       130 ~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~------~~g-~----------~~~~~~~~~eav  192 (350)
T 1x7d_A          130 RKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKE------YSG-L----------TIRRASSVAEAV  192 (350)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTT------CTT-C----------EEEECSSHHHHH
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHh------ccC-c----------eEEEeCCHHHHH
Confidence            589999999999999988754  346899999999988775432110      001 0          13334555 567


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972          383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  422 (721)
Q Consensus       383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  422 (721)
                      ++||+||.|+|....  ..++.  ...+++++.|+..+|.
T Consensus       193 ~~aDiVi~aTps~~~--~pvl~--~~~l~~G~~V~~vgs~  228 (350)
T 1x7d_A          193 KGVDIITTVTADKAY--ATIIT--PDMLEPGMHLNAVGGD  228 (350)
T ss_dssp             TTCSEEEECCCCSSE--EEEEC--GGGCCTTCEEEECSCC
T ss_pred             hcCCEEEEeccCCCC--Cceec--HHHcCCCCEEEECCCC
Confidence            899999999995410  11111  1456777777655443

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=97.24  E-value=0.00044  Score=76.38  Aligned_cols=87  Identities=25%  Similarity=0.277  Sum_probs=62.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|+|||+|.||..+|+.+...|.+|+++|+++++++.+..           .|             ... .++ +.+++
T Consensus       275 ktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~-----------~G-------------a~~-~~l~e~l~~  329 (494)
T 3ce6_A          275 KKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMM-----------EG-------------FDV-VTVEEAIGD  329 (494)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TT-------------CEE-CCHHHHGGG
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----------cC-------------CEE-ecHHHHHhC
Confidence            58999999999999999999999999999999988665421           12             111 122 44678


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  421 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts  421 (721)
                      +|+||+|++....+.    .+..+.++++++++..+.
T Consensus       330 aDvVi~atgt~~~i~----~~~l~~mk~ggilvnvG~  362 (494)
T 3ce6_A          330 ADIVVTATGNKDIIM----LEHIKAMKDHAILGNIGH  362 (494)
T ss_dssp             CSEEEECSSSSCSBC----HHHHHHSCTTCEEEECSS
T ss_pred             CCEEEECCCCHHHHH----HHHHHhcCCCcEEEEeCC
Confidence            999999987443232    234455788888865443

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=97.24  E-value=0.0003  Score=70.35  Aligned_cols=78  Identities=19%  Similarity=0.158  Sum_probs=53.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCce-EEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc-C
Q 004972          307 KVAVIGGGLMGSGIATAHILNNIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF-K  383 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~~G~~V-~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l-~  383 (721)
                      ||+|||+|.||..++..+.+.|++| .+||+++. .+                             .  ..+++ +.+ .
T Consensus         2 ~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~~-~~-----------------------------~--~~~~~~~l~~~   49 (236)
T 2dc1_A            2 LVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGE-HE-----------------------------K--MVRGIDEFLQR   49 (236)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC-CT-----------------------------T--EESSHHHHTTS
T ss_pred             EEEEECCCHHHHHHHHHHhcCCCEEEEEEecCcc-hh-----------------------------h--hcCCHHHHhcC
Confidence            7999999999999999999999997 69998842 10                             0  23344 334 6


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCC
Q 004972          384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  421 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts  421 (721)
                      ++|+||+|+|.  ..-.++..   ..+..+..+++.++
T Consensus        50 ~~DvVv~~~~~--~~~~~~~~---~~l~~G~~vv~~~~   82 (236)
T 2dc1_A           50 EMDVAVEAASQ--QAVKDYAE---KILKAGIDLIVLST   82 (236)
T ss_dssp             CCSEEEECSCH--HHHHHHHH---HHHHTTCEEEESCG
T ss_pred             CCCEEEECCCH--HHHHHHHH---HHHHCCCcEEEECc
Confidence            89999999993  33333332   33445665655443

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=97.20  E-value=0.00068  Score=70.65  Aligned_cols=98  Identities=12%  Similarity=-0.028  Sum_probs=61.8

Q ss_pred             CceeEEEEcCCCCcHH-HHHHHHH-CCCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-
Q 004972          304 GVRKVAVIGGGLMGSG-IATAHIL-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  379 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~-iA~~la~-~G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-  379 (721)
                      ++.||+|||+|.||.. ++..+.+ .+.+++ ++|+++++++...+..                      + +...+++ 
T Consensus         5 ~~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~----------------------~-~~~~~~~~   61 (308)
T 3uuw_A            5 KNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDY----------------------R-IMPFDSIE   61 (308)
T ss_dssp             CCCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHH----------------------T-CCBCSCHH
T ss_pred             ccCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHc----------------------C-CCCcCCHH
Confidence            4568999999999997 8888876 467777 8999999877643211                      1 1124455 


Q ss_pred             cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHH
Q 004972          380 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV  428 (721)
Q Consensus       380 ~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l  428 (721)
                      +.++++|+|++|+|....  .++.....+.  ..-+++.-..+....+.
T Consensus        62 ~ll~~~D~V~i~tp~~~h--~~~~~~al~~--gk~vl~EKP~~~~~~~~  106 (308)
T 3uuw_A           62 SLAKKCDCIFLHSSTETH--YEIIKILLNL--GVHVYVDKPLASTVSQG  106 (308)
T ss_dssp             HHHTTCSEEEECCCGGGH--HHHHHHHHHT--TCEEEECSSSSSSHHHH
T ss_pred             HHHhcCCEEEEeCCcHhH--HHHHHHHHHC--CCcEEEcCCCCCCHHHH
Confidence            445689999999995443  3443333322  12255443445555443

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=97.12  E-value=0.00081  Score=70.56  Aligned_cols=70  Identities=17%  Similarity=0.045  Sum_probs=51.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHH--CCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc
Q 004972          306 RKVAVIGGGLMGSGIATAHIL--NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  382 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  382 (721)
                      ++|+|||+|.||..++..++.  ...+|.+||++++++++..+.+..       .+ +          .+. .+++ +.+
T Consensus       126 ~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~-------~~-~----------~~~-~~~~~e~v  186 (322)
T 1omo_A          126 SVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCED-------RG-I----------SAS-VQPAEEAS  186 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHH-------TT-C----------CEE-ECCHHHHT
T ss_pred             CEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHh-------cC-c----------eEE-ECCHHHHh
Confidence            589999999999999999887  346899999999998876443221       01 1          123 3444 567


Q ss_pred             CCCCEEEEcccCC
Q 004972          383 KDVDMVIEAVIES  395 (721)
Q Consensus       383 ~~aDlVIeavpe~  395 (721)
                       ++|+||.|+|..
T Consensus       187 -~aDvVi~aTp~~  198 (322)
T 1omo_A          187 -RCDVLVTTTPSR  198 (322)
T ss_dssp             -SSSEEEECCCCS
T ss_pred             -CCCEEEEeeCCC
Confidence             899999999843

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=97.12  E-value=0.0003  Score=75.75  Aligned_cols=86  Identities=19%  Similarity=0.154  Sum_probs=60.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|+|||.|.+|.++|..+...|.+|+++|+++.....+.           ..|             .... ++ +.+++
T Consensus       212 ktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~-----------~~G-------------~~~~-sL~eal~~  266 (436)
T 3h9u_A          212 KTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAA-----------MEG-------------YQVL-LVEDVVEE  266 (436)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------HTT-------------CEEC-CHHHHTTT
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHH-----------HhC-------------Ceec-CHHHHHhh
Confidence            5899999999999999999999999999999987654331           111             1222 34 66889


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  420 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t  420 (721)
                      ||+||.+....--+.    .+....++++++|+..+
T Consensus       267 ADVVilt~gt~~iI~----~e~l~~MK~gAIVINvg  298 (436)
T 3h9u_A          267 AHIFVTTTGNDDIIT----SEHFPRMRDDAIVCNIG  298 (436)
T ss_dssp             CSEEEECSSCSCSBC----TTTGGGCCTTEEEEECS
T ss_pred             CCEEEECCCCcCccC----HHHHhhcCCCcEEEEeC
Confidence            999998654222121    23345578999887544

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=97.09  E-value=0.0081  Score=66.43  Aligned_cols=138  Identities=12%  Similarity=0.096  Sum_probs=91.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHH-HHhhCCCcEEE
Q 004972           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVN-LIEDCKKPIVA  103 (721)
Q Consensus        25 ~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~p~Ia  103 (721)
                      .-++.....+.+..+++.+.+. .+-+|.|.-.     .|+.+.+-.        ..+... .+.+.+ ....-..|+|+
T Consensus       118 gGS~g~~~~~Ki~ra~e~A~~~-~lPvI~l~dS-----GGARmqeg~--------~sl~~~-~~i~~~~~~~s~~iP~Is  182 (531)
T 3n6r_B          118 GGSVSETHSKKICKIMDMAMQN-GAPVIGINDS-----GGARIQEGV--------DSLAGY-GEVFQRNIMASGVVPQIS  182 (531)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECC-----CCBCGGGTH--------HHHHHH-HHHHHHHHHTTTTSCEEE
T ss_pred             cccccHHHHHHHHHHHHHHHHc-CCCEEEEeCC-----CccccCccc--------chhhhH-HHHHHHHHHHhCCCCEEE
Confidence            4789999999999999988765 3456666643     344443310        001111 122211 11224589999


Q ss_pred             EECCcccccchHhhhhcCEEEeeCC-ceEeCcccccCccccccccccccCHHHHHHHHHcCCCcCHHHH-------HHcC
Q 004972          104 AVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSEEG-------WKLG  175 (721)
Q Consensus       104 av~G~a~GgG~~lalacD~ria~~~-a~~~~pe~~~Gl~P~~~~l~r~~G~~~a~~l~ltg~~~~a~eA-------~~~G  175 (721)
                      +|.|.|.|||......||++|+.++ +.+++.                 |+....  ..+|+.+++++.       .+.|
T Consensus       183 vv~Gp~~GG~a~s~a~~D~vi~~~~~a~i~~a-----------------GP~vI~--~~~ge~v~~E~LGGa~~h~~~sG  243 (531)
T 3n6r_B          183 MIMGPCAGGAVYSPAMTDFIFMVKDSSYMFVT-----------------GPDVVK--TVTNEQVSAEELGGATTHTRKSS  243 (531)
T ss_dssp             EECSCCBGGGGHHHHHSSEEEEETTTCBCBSS-----------------CHHHHH--HHHCCCCCHHHHHBHHHHHHTTS
T ss_pred             EEeCCcchHHHHHhhhCCEEEEecCCceEeec-----------------CHHHHH--HHhCCccChhhcchHHHHhhccC
Confidence            9999999999887778999999975 776653                 333222  257899999998       8899


Q ss_pred             CccEEcCCchHHHHHHHHHHHHHh
Q 004972          176 LIDAVVTSEELLKVSRLWALDIAA  199 (721)
Q Consensus       176 lv~~vv~~~~l~~~a~~~a~~~a~  199 (721)
                      ++|.++++|+   ++.+.++++.+
T Consensus       244 ~~d~v~~~e~---~a~~~~r~lls  264 (531)
T 3n6r_B          244 VADAAFENDV---EALAEVRRLVD  264 (531)
T ss_dssp             CCSEEESSHH---HHHHHHHHHHT
T ss_pred             cceEEeCCHH---HHHHHHHHHHH
Confidence            9999998743   34444444443

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=97.08  E-value=0.00046  Score=72.02  Aligned_cols=91  Identities=13%  Similarity=0.134  Sum_probs=59.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHC--CCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc
Q 004972          306 RKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  382 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  382 (721)
                      ++|+|||+|.||..++..+...  ..+|++||++  +.++..+++...+      |           -.+... +. +.+
T Consensus       122 ~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~--~a~~la~~l~~~~------g-----------~~~~~~-~~~eav  181 (313)
T 3hdj_A          122 SVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY--ASPEILERIGRRC------G-----------VPARMA-APADIA  181 (313)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT--CCHHHHHHHHHHH------T-----------SCEEEC-CHHHHH
T ss_pred             cEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc--HHHHHHHHHHHhc------C-----------CeEEEe-CHHHHH
Confidence            5899999999999999998763  4589999999  4333322222110      1           012333 54 567


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972          383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  422 (721)
Q Consensus       383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  422 (721)
                      ++||+||.|+|...    .++.  .+.++++++|.+.+|.
T Consensus       182 ~~aDIVi~aT~s~~----pvl~--~~~l~~G~~V~~vGs~  215 (313)
T 3hdj_A          182 AQADIVVTATRSTT----PLFA--GQALRAGAFVGAIGSS  215 (313)
T ss_dssp             HHCSEEEECCCCSS----CSSC--GGGCCTTCEEEECCCS
T ss_pred             hhCCEEEEccCCCC----cccC--HHHcCCCcEEEECCCC
Confidence            89999999998532    2222  3457788877765554

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=97.07  E-value=0.0012  Score=69.09  Aligned_cols=97  Identities=10%  Similarity=0.016  Sum_probs=59.3

Q ss_pred             CCceeEEEEcCCCCcHH-HHHHHHH-CCCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc
Q 004972          303 RGVRKVAVIGGGLMGSG-IATAHIL-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  379 (721)
Q Consensus       303 ~~~~kI~VIG~G~mG~~-iA~~la~-~G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  379 (721)
                      |+..||+|||+|.||.. ++..+.+ .+++|+ ++|+++++++...+..          |             +...+++
T Consensus         3 m~~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~----------g-------------~~~~~~~   59 (319)
T 1tlt_A            3 LKKLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESW----------R-------------IPYADSL   59 (319)
T ss_dssp             --CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHH----------T-------------CCBCSSH
T ss_pred             CCcceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHc----------C-------------CCccCcH
Confidence            44568999999999997 8888876 477776 9999998766532210          1             1133444


Q ss_pred             ccc-CCCCEEEEcccCChHHHHHHHHHHHhhCCCCe-EEEecCCCCCHHH
Q 004972          380 SEF-KDVDMVIEAVIESVPLKQKIFSELEKACPPHC-ILATNTSTIDLNI  427 (721)
Q Consensus       380 ~~l-~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~-ii~s~ts~~~i~~  427 (721)
                      +.+ .++|+|++|+|.....  ++....   +..+. +++....+....+
T Consensus        60 ~~l~~~~D~V~i~tp~~~h~--~~~~~a---l~~G~~v~~eKP~~~~~~~  104 (319)
T 1tlt_A           60 SSLAASCDAVFVHSSTASHF--DVVSTL---LNAGVHVCVDKPLAENLRD  104 (319)
T ss_dssp             HHHHTTCSEEEECSCTTHHH--HHHHHH---HHTTCEEEEESSSCSSHHH
T ss_pred             HHhhcCCCEEEEeCCchhHH--HHHHHH---HHcCCeEEEeCCCCCCHHH
Confidence            433 6799999999955432  333332   22343 4544344455544

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=97.07  E-value=0.00018  Score=72.65  Aligned_cols=37  Identities=16%  Similarity=0.144  Sum_probs=34.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHH
Q 004972          307 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLK  343 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~  343 (721)
                      +|+|||+|.||.+++..|++.|. +|+++||++++++.
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~  147 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKA  147 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHT
T ss_pred             eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence            79999999999999999999998 99999999987554

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=97.02  E-value=0.00029  Score=74.85  Aligned_cols=104  Identities=12%  Similarity=0.088  Sum_probs=63.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhh--------cCC---CCHHHHHHhhcCce
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT--------RGK---LTQDKANNALKMLK  374 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~--------~g~---~~~~~~~~~~~~i~  374 (721)
                      .||+|||+|.||..+|+.+...|.+|+++|+++++++.+.+. .   ...+.        .+.   ++.+....      
T Consensus       185 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~l-G---a~~~~l~~~~~~~~gya~~~~~~~~~~------  254 (381)
T 3p2y_A          185 ASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSV-G---AQWLDLGIDAAGEGGYARELSEAERAQ------  254 (381)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHT-T---CEECCCC-------------CHHHHHH------
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-C---CeEEeccccccccccchhhhhHHHHhh------
Confidence            689999999999999999999999999999999987765320 0   00000        000   01110000      


Q ss_pred             eccCc-cccCCCCEEEEcc--cCChHHHHHHHHHHHhhCCCCeEEEecC
Q 004972          375 GVLDY-SEFKDVDMVIEAV--IESVPLKQKIFSELEKACPPHCILATNT  420 (721)
Q Consensus       375 ~~~~~-~~l~~aDlVIeav--pe~~~~k~~v~~~l~~~~~~~~ii~s~t  420 (721)
                      ...++ +.+++||+||.++  |....- .-+-++..+.++++.+|++.+
T Consensus       255 ~~~~l~e~l~~aDIVI~tv~iPg~~ap-~Lvt~emv~~MkpGsVIVDvA  302 (381)
T 3p2y_A          255 QQQALEDAITKFDIVITTALVPGRPAP-RLVTAAAATGMQPGSVVVDLA  302 (381)
T ss_dssp             HHHHHHHHHTTCSEEEECCCCTTSCCC-CCBCHHHHHTSCTTCEEEETT
T ss_pred             hHHHHHHHHhcCCEEEECCCCCCcccc-eeecHHHHhcCCCCcEEEEEe
Confidence            01122 5679999999986  421110 001244555678899888654

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.01  E-value=0.0024  Score=58.93  Aligned_cols=38  Identities=8%  Similarity=0.010  Sum_probs=33.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCC-HHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVN-SEYLLK  343 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~-~~~~~~  343 (721)
                      ++|.|+|+|.+|..++..|.+.|++|+++|++ ++..+.
T Consensus         4 ~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~   42 (153)
T 1id1_A            4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQ   42 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHH
Confidence            57999999999999999999999999999998 455443

>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=97.00  E-value=0.018  Score=58.73  Aligned_cols=151  Identities=14%  Similarity=0.165  Sum_probs=93.8

Q ss_pred             EEEEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccc--hHHHHHH
Q 004972           15 VAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMP--DVSVELV   90 (721)
Q Consensus        15 v~~i~l~~p~--~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~--~~~~~~~   90 (721)
                      |+++ -|++.  .-+++....+.+.++++.+.+.. +-+|.|.-.|++     -+.+       . ...+.  ......+
T Consensus       123 V~v~-a~d~~~~gGs~g~~~~~K~~r~ie~A~~~~-lPlI~l~dsgGa-----r~qE-------G-i~sl~q~aki~~~l  187 (285)
T 2f9i_B          123 FGVA-VMDSRFRMGSMGSVIGEKICRIIDYCTENR-LPFILFSASGGA-----RMQE-------G-IISLMQMGKTSVSL  187 (285)
T ss_dssp             EEEE-EECTTTGGGCCCHHHHHHHHHHHHHHHHTT-CCEEEEEEECSC-----CGGG-------H-HHHHHHHHHHHHHH
T ss_pred             EEEE-EEccccccCcCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCCCc-----chhh-------h-hhhHhHHHHHHHHH
Confidence            4444 34443  37899999999999999888654 556666543332     2221       0 10000  1111233


Q ss_pred             HHHHhhCCCcEEEEECCcccccchHh-hhhcCEEEeeCCceEeCcccccCccccccccccccCHHHHHHHHHcCCCcCHH
Q 004972           91 VNLIEDCKKPIVAAVEGLALGGGLEL-AMGCHARIAAPKTQLGLPELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSE  169 (721)
Q Consensus        91 ~~~l~~~~~p~Iaav~G~a~GgG~~l-alacD~ria~~~a~~~~pe~~~Gl~P~~~~l~r~~G~~~a~~l~ltg~~~~a~  169 (721)
                       .++.....|.|+++.|.|+||+... ++.+|+++|.++|.+++-....  +  .+.+-+.+.          -..-+|+
T Consensus       188 -~~~s~~~vP~Isvv~g~~~GG~~as~a~~~D~i~a~p~A~i~~aGP~v--i--~~~~~~~~~----------e~~~~Ae  252 (285)
T 2f9i_B          188 -KRHSDAGLLYISYLTHPTTGGVSASFASVGDINLSEPKALIGFAGRRV--I--EQTINEKLP----------DDFQTAE  252 (285)
T ss_dssp             -HHHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESSCHHH--H--HHHHTSCCC----------TTTTBHH
T ss_pred             -HHHHcCCCCEEEEEeCCccHHHHHHhhhCCCEEEEeCCcEEEEcCHHH--H--HHHhcccch----------HhHhhHH
Confidence             3466789999999999999998644 8899999999999888742110  0  111111111          0112477


Q ss_pred             HHHHcCCccEEcCCchHHHHHHHHHH
Q 004972          170 EGWKLGLIDAVVTSEELLKVSRLWAL  195 (721)
Q Consensus       170 eA~~~Glv~~vv~~~~l~~~a~~~a~  195 (721)
                      -+.+.|+||.|++++++.+....+..
T Consensus       253 ~~~~~G~iD~Iv~~~e~r~~l~~~L~  278 (285)
T 2f9i_B          253 FLLEHGQLDKVVHRNDMRQTLSEILK  278 (285)
T ss_dssp             HHHHTTCCSEECCGGGHHHHHHHHHH
T ss_pred             HHHhcCCccEEeChHHHHHHHHHHHH
Confidence            78899999999998877666555543

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=97.00  E-value=0.0021  Score=67.60  Aligned_cols=96  Identities=16%  Similarity=0.155  Sum_probs=61.7

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHC-CCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cc
Q 004972          305 VRKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  381 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  381 (721)
                      +.||+|||+|.||..++..+.+. +++|+ ++|+++++++...+.                      . .+. .+++ +.
T Consensus         3 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~----------------------~-~~~-~~~~~~~   58 (331)
T 4hkt_A            3 TVRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGA----------------------Y-GCE-VRTIDAI   58 (331)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHH----------------------T-TCE-ECCHHHH
T ss_pred             ceEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHH----------------------h-CCC-cCCHHHH
Confidence            36899999999999999999885 77876 799999886654221                      0 123 4455 33


Q ss_pred             cC--CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHH
Q 004972          382 FK--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV  428 (721)
Q Consensus       382 l~--~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l  428 (721)
                      ++  ++|+|++|+|....  .++.....+.  ...+++....+....+.
T Consensus        59 l~~~~~D~V~i~tp~~~h--~~~~~~al~~--gk~v~~EKP~~~~~~~~  103 (331)
T 4hkt_A           59 EAAADIDAVVICTPTDTH--ADLIERFARA--GKAIFCEKPIDLDAERV  103 (331)
T ss_dssp             HHCTTCCEEEECSCGGGH--HHHHHHHHHT--TCEEEECSCSCSSHHHH
T ss_pred             hcCCCCCEEEEeCCchhH--HHHHHHHHHc--CCcEEEecCCCCCHHHH
Confidence            44  79999999995443  2333333222  22355544445555543

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=97.00  E-value=0.0023  Score=67.02  Aligned_cols=95  Identities=15%  Similarity=0.022  Sum_probs=58.9

Q ss_pred             eeEEEEcCCCCcH-HHHHHHHHC-CCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCce-eccCcccc
Q 004972          306 RKVAVIGGGLMGS-GIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK-GVLDYSEF  382 (721)
Q Consensus       306 ~kI~VIG~G~mG~-~iA~~la~~-G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~-~~~~~~~l  382 (721)
                      .||+|||+|.||. .++..+.+. +.+|+++|+++++++...+.          -|            .-. .++..+.+
T Consensus         3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~----------~g------------~~~~~~~~~~~l   60 (323)
T 1xea_A            3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATR----------YR------------VSATCTDYRDVL   60 (323)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHH----------TT------------CCCCCSSTTGGG
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH----------cC------------CCccccCHHHHh
Confidence            5899999999998 488888764 67888999999887654221          01            001 23333555


Q ss_pred             -CCCCEEEEcccCChHHHHHHHHHHHhhCCCCe-EEEecCCCCCHHH
Q 004972          383 -KDVDMVIEAVIESVPLKQKIFSELEKACPPHC-ILATNTSTIDLNI  427 (721)
Q Consensus       383 -~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~-ii~s~ts~~~i~~  427 (721)
                       .++|+|++|+|...  -.++..+..+   .+. +++....+....+
T Consensus        61 ~~~~D~V~i~tp~~~--h~~~~~~al~---~Gk~V~~EKP~~~~~~~  102 (323)
T 1xea_A           61 QYGVDAVMIHAATDV--HSTLAAFFLH---LGIPTFVDKPLAASAQE  102 (323)
T ss_dssp             GGCCSEEEECSCGGG--HHHHHHHHHH---TTCCEEEESCSCSSHHH
T ss_pred             hcCCCEEEEECCchh--HHHHHHHHHH---CCCeEEEeCCCcCCHHH
Confidence             68999999999433  3333333222   232 4544444455443

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=96.97  E-value=0.002  Score=69.30  Aligned_cols=87  Identities=21%  Similarity=0.291  Sum_probs=60.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|+|+|+|.+|..+|..+...|.+|+++|+++.....+.           ..|             ... .++ +.++.
T Consensus       221 ktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~-----------~~G-------------~~v-~~Leeal~~  275 (435)
T 3gvp_A          221 KQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQAC-----------MDG-------------FRL-VKLNEVIRQ  275 (435)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------HTT-------------CEE-CCHHHHTTT
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHH-----------HcC-------------CEe-ccHHHHHhc
Confidence            5899999999999999999999999999999987644321           111             111 223 56789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  421 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts  421 (721)
                      ||+||.| ++...+..   .+....++++++|+..+.
T Consensus       276 ADIVi~a-tgt~~lI~---~e~l~~MK~gailINvgr  308 (435)
T 3gvp_A          276 VDIVITC-TGNKNVVT---REHLDRMKNSCIVCNMGH  308 (435)
T ss_dssp             CSEEEEC-SSCSCSBC---HHHHHHSCTTEEEEECSS
T ss_pred             CCEEEEC-CCCcccCC---HHHHHhcCCCcEEEEecC
Confidence            9999997 43333211   233445788888865443

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=96.97  E-value=0.014  Score=64.55  Aligned_cols=138  Identities=13%  Similarity=0.094  Sum_probs=92.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHH--HHhhCCCcEE
Q 004972           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVN--LIEDCKKPIV  102 (721)
Q Consensus        25 ~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~p~I  102 (721)
                      .-++.....+.+..+++.+.+. .+-+|.|.-.|     |+-+.+=        ...+.. +...+.+  .+.. ..|+|
T Consensus       110 gGS~g~~~~~Ki~ra~e~A~~~-~lP~I~l~dSg-----GaRmqEg--------~~~l~~-~~~i~~~~~~~s~-~iP~I  173 (530)
T 3iav_A          110 GGALGEVYGQKIVKVMDFALKT-GCPVVGINDSG-----GARIQEG--------VASLGA-YGEIFRRNTHASG-VIPQI  173 (530)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECCC-----SBCGGGT--------HHHHHH-HHHHHHHHHHTTT-TSCEE
T ss_pred             eEeccHHHHHHHHHHHHHHHHc-CCCEEEEEcCC-----Ccchhhh--------hhhHHH-HHHHHHHHHHHcC-CCCEE
Confidence            4889999999999999888765 45567676533     4434321        111111 1122211  1222 49999


Q ss_pred             EEECCcccccchHhhhhcCEEEeeCC-ceEeCcccccCccccccccccccCHHHHHHHHHcCCCcCHHHH-------HHc
Q 004972          103 AAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSEEG-------WKL  174 (721)
Q Consensus       103 aav~G~a~GgG~~lalacD~ria~~~-a~~~~pe~~~Gl~P~~~~l~r~~G~~~a~~l~ltg~~~~a~eA-------~~~  174 (721)
                      ++|.|.|.|||......||++|++++ +.+++.                 |+....  ..+|+.+++++.       ...
T Consensus       174 svv~G~~~GG~a~~~al~D~~im~~~~a~i~~a-----------------GP~vi~--~~~ge~v~~e~LGGa~~h~~~s  234 (530)
T 3iav_A          174 SLVVGPCAGGAVYSPAITDFTVMVDQTSHMFIT-----------------GPDVIK--TVTGEDVGFEELGGARTHNSTS  234 (530)
T ss_dssp             EEECSEEEGGGGHHHHHSSEEEEETTTCEEESS-----------------CHHHHH--HHHCCCCCHHHHHBHHHHHHTS
T ss_pred             EEEecCcchHHHHHHHhCCEEEEecCCcEEEec-----------------CHHHHH--HHhCCcCChhhcchHHHHHhcc
Confidence            99999999999988889999999875 888874                 333222  157899998875       579


Q ss_pred             CCccEEcCCc-hHHHHHHHHHHHH
Q 004972          175 GLIDAVVTSE-ELLKVSRLWALDI  197 (721)
Q Consensus       175 Glv~~vv~~~-~l~~~a~~~a~~~  197 (721)
                      |++|.+++++ +..+.++++...+
T Consensus       235 Gv~d~va~de~~a~~~~r~~ls~l  258 (530)
T 3iav_A          235 GVAHHMAGDEKDAVEYVKQLLSYL  258 (530)
T ss_dssp             CCCSEEESSHHHHHHHHHHHHHHS
T ss_pred             CceeEEecChHHHHHHHHHHHHhc
Confidence            9999999765 3555555555443

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=96.96  E-value=0.00036  Score=74.79  Aligned_cols=39  Identities=18%  Similarity=0.143  Sum_probs=36.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  344 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  344 (721)
                      .||+|||+|.||..+|+.+...|.+|+++|+++++++.+
T Consensus       191 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~  229 (405)
T 4dio_A          191 AKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQV  229 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            589999999999999999999999999999999887765

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=96.95  E-value=0.002  Score=68.20  Aligned_cols=97  Identities=19%  Similarity=0.224  Sum_probs=61.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHC-CCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc
Q 004972          306 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  382 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  382 (721)
                      .||+|||+|.||..++..+.+. +.+|+ ++|+++++++...+.                      .+.....+++ +.+
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~----------------------~~~~~~~~~~~~ll   60 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEK----------------------LGVEKAYKDPHELI   60 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHH----------------------HTCSEEESSHHHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHH----------------------hCCCceeCCHHHHh
Confidence            5899999999999999998875 67766 799999887654321                      1112345565 334


Q ss_pred             C--CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHH
Q 004972          383 K--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV  428 (721)
Q Consensus       383 ~--~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l  428 (721)
                      +  ++|+|++|+|....  .++..+..+.  ..-+++.-.-+....+.
T Consensus        61 ~~~~~D~V~i~tp~~~h--~~~~~~al~~--gk~v~~EKP~~~~~~e~  104 (344)
T 3ezy_A           61 EDPNVDAVLVCSSTNTH--SELVIACAKA--KKHVFCEKPLSLNLADV  104 (344)
T ss_dssp             HCTTCCEEEECSCGGGH--HHHHHHHHHT--TCEEEEESCSCSCHHHH
T ss_pred             cCCCCCEEEEcCCCcch--HHHHHHHHhc--CCeEEEECCCCCCHHHH
Confidence            4  79999999995433  2333333221  22355544445555443

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=96.94  E-value=0.0037  Score=66.07  Aligned_cols=71  Identities=15%  Similarity=0.192  Sum_probs=49.6

Q ss_pred             CceeEEEEcCCCCcHHHHHHHH-H-CCCce-EEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-
Q 004972          304 GVRKVAVIGGGLMGSGIATAHI-L-NNIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  379 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~~la-~-~G~~V-~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-  379 (721)
                      ++.||+|||+|.||..++..+. + .|++| .++|+++++++...+           .           .+.....+++ 
T Consensus         7 ~~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~-----------~-----------~g~~~~~~~~~   64 (346)
T 3cea_A            7 KPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKN-----------E-----------LGVETTYTNYK   64 (346)
T ss_dssp             CCEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHH-----------T-----------TCCSEEESCHH
T ss_pred             CcceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHH-----------H-----------hCCCcccCCHH
Confidence            4568999999999999999988 4 46775 589999988665321           1           1111334555 


Q ss_pred             cccC--CCCEEEEcccCCh
Q 004972          380 SEFK--DVDMVIEAVIESV  396 (721)
Q Consensus       380 ~~l~--~aDlVIeavpe~~  396 (721)
                      +.++  ++|+|++|+|...
T Consensus        65 ~~l~~~~~D~V~i~tp~~~   83 (346)
T 3cea_A           65 DMIDTENIDAIFIVAPTPF   83 (346)
T ss_dssp             HHHTTSCCSEEEECSCGGG
T ss_pred             HHhcCCCCCEEEEeCChHh
Confidence            3343  6999999999444

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=96.94  E-value=0.0026  Score=67.53  Aligned_cols=100  Identities=17%  Similarity=0.063  Sum_probs=61.5

Q ss_pred             CCCceeEEEEcCCCCcH-HHHHHHHHC-CCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccC
Q 004972          302 PRGVRKVAVIGGGLMGS-GIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD  378 (721)
Q Consensus       302 ~~~~~kI~VIG~G~mG~-~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  378 (721)
                      +|+..||+|||+|.||. .++..+.+. +++|+ ++|+++++++...+.                      . .+...++
T Consensus        24 ~m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~----------------------~-g~~~~~~   80 (350)
T 3rc1_A           24 NANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTER----------------------F-GGEPVEG   80 (350)
T ss_dssp             --CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHH----------------------H-CSEEEES
T ss_pred             CCCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHH----------------------c-CCCCcCC
Confidence            45557899999999998 788888877 77775 889999886654221                      0 1233356


Q ss_pred             cc-ccC--CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHH
Q 004972          379 YS-EFK--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV  428 (721)
Q Consensus       379 ~~-~l~--~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l  428 (721)
                      ++ .++  ++|+|++|+|.....  ++.....+.  ..-+++--.-+....+.
T Consensus        81 ~~~ll~~~~~D~V~i~tp~~~h~--~~~~~al~a--Gk~Vl~EKP~a~~~~ea  129 (350)
T 3rc1_A           81 YPALLERDDVDAVYVPLPAVLHA--EWIDRALRA--GKHVLAEKPLTTDRPQA  129 (350)
T ss_dssp             HHHHHTCTTCSEEEECCCGGGHH--HHHHHHHHT--TCEEEEESSSCSSHHHH
T ss_pred             HHHHhcCCCCCEEEECCCcHHHH--HHHHHHHHC--CCcEEEeCCCCCCHHHH
Confidence            53 343  689999999955443  333333221  12255544444555443

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=96.92  E-value=0.00047  Score=72.52  Aligned_cols=101  Identities=18%  Similarity=0.132  Sum_probs=65.2

Q ss_pred             eeEEEEc-CCCCcHHHHHHHHHCCC--c-----eEEEeCCH--HHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCcee
Q 004972          306 RKVAVIG-GGLMGSGIATAHILNNI--Y-----VVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG  375 (721)
Q Consensus       306 ~kI~VIG-~G~mG~~iA~~la~~G~--~-----V~l~d~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  375 (721)
                      .||+|+| +|.+|+++|..|+..|+  +     ++++|+++  +.++.....+.+        ....      ....+..
T Consensus         4 ~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~--------~~~~------~~~~~~~   69 (333)
T 5mdh_A            4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQD--------CALP------LLKDVIA   69 (333)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHH--------TCCT------TEEEEEE
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHh--------hhhc------ccCCEEE
Confidence            5899999 79999999999999886  6     99999975  233322111111        0000      1123444


Q ss_pred             ccC-ccccCCCCEEEEcc--cC------------ChHHHHHHHHHHHhhCCCCeEEEecC
Q 004972          376 VLD-YSEFKDVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILATNT  420 (721)
Q Consensus       376 ~~~-~~~l~~aDlVIeav--pe------------~~~~k~~v~~~l~~~~~~~~ii~s~t  420 (721)
                      +++ ++++++||+||.+.  |.            +..+.+.+...+.++.+++.+++..|
T Consensus        70 ~~~~~~~~~daDvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvs  129 (333)
T 5mdh_A           70 TDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVG  129 (333)
T ss_dssp             ESCHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred             cCCcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcC
Confidence            444 47899999999875  21            34566777778888887765344333

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=96.90  E-value=0.0014  Score=70.62  Aligned_cols=87  Identities=20%  Similarity=0.243  Sum_probs=60.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|+|||.|.+|..+|+.+...|.+|+++|+++.....+.           ..|             .... ++ +.++.
T Consensus       248 KTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~-----------~~G-------------~~vv-~LeElL~~  302 (464)
T 3n58_A          248 KVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAA-----------MDG-------------FEVV-TLDDAAST  302 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHH-----------HTT-------------CEEC-CHHHHGGG
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHH-----------hcC-------------ceec-cHHHHHhh
Confidence            5899999999999999999999999999999987643321           111             1211 23 56789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  422 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  422 (721)
                      ||+|+.+....--+.    .+....++++++|+ |++.
T Consensus       303 ADIVv~atgt~~lI~----~e~l~~MK~GAILI-NvGR  335 (464)
T 3n58_A          303 ADIVVTTTGNKDVIT----IDHMRKMKDMCIVG-NIGH  335 (464)
T ss_dssp             CSEEEECCSSSSSBC----HHHHHHSCTTEEEE-ECSS
T ss_pred             CCEEEECCCCccccC----HHHHhcCCCCeEEE-EcCC
Confidence            999999864322222    33445578999886 4543

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=96.89  E-value=0.0023  Score=68.10  Aligned_cols=97  Identities=20%  Similarity=0.141  Sum_probs=62.0

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHC-CCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cc
Q 004972          305 VRKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  381 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  381 (721)
                      ..||+|||+|.||..++..+.+. +++|+ ++|+++++++...+..                       .+...+++ +.
T Consensus         5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~-----------------------g~~~~~~~~~~   61 (354)
T 3db2_A            5 PVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRY-----------------------NCAGDATMEAL   61 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHH-----------------------TCCCCSSHHHH
T ss_pred             cceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHc-----------------------CCCCcCCHHHH
Confidence            35899999999999999999876 77865 8999999876643210                       12224555 33


Q ss_pred             c--CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHH
Q 004972          382 F--KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV  428 (721)
Q Consensus       382 l--~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l  428 (721)
                      +  .++|+|++|+|.....  ++..+..+.  ..-+++....+....+.
T Consensus        62 l~~~~~D~V~i~tp~~~h~--~~~~~al~~--gk~vl~EKP~~~~~~~~  106 (354)
T 3db2_A           62 LAREDVEMVIITVPNDKHA--EVIEQCARS--GKHIYVEKPISVSLDHA  106 (354)
T ss_dssp             HHCSSCCEEEECSCTTSHH--HHHHHHHHT--TCEEEEESSSCSSHHHH
T ss_pred             hcCCCCCEEEEeCChHHHH--HHHHHHHHc--CCEEEEccCCCCCHHHH
Confidence            4  5799999999965543  333332221  22355554445555443

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=96.88  E-value=0.002  Score=67.26  Aligned_cols=93  Identities=20%  Similarity=0.122  Sum_probs=59.3

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHC-CCce-EEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cc
Q 004972          305 VRKVAVIGGGLMGSGIATAHILN-NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  381 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~-G~~V-~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  381 (721)
                      ..||+|||+|.||..++..+.+. ++++ .++|+++++++...           +              .+...+++ +.
T Consensus        10 ~~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~-----------~--------------~~~~~~~~~~~   64 (315)
T 3c1a_A           10 PVRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVP-----------P--------------GCVIESDWRSV   64 (315)
T ss_dssp             CEEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCC-----------T--------------TCEEESSTHHH
T ss_pred             cceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHH-----------h--------------hCcccCCHHHH
Confidence            46899999999999999999885 6665 59999988754321           0              12334555 33


Q ss_pred             cC--CCCEEEEcccCChHHHHHHHHHHHhhCCCCe-EEEecCCCCCHHH
Q 004972          382 FK--DVDMVIEAVIESVPLKQKIFSELEKACPPHC-ILATNTSTIDLNI  427 (721)
Q Consensus       382 l~--~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~-ii~s~ts~~~i~~  427 (721)
                      ++  ++|+|++|+|....  .++..+.   ++.+. +++....+....+
T Consensus        65 l~~~~~D~V~i~tp~~~h--~~~~~~a---l~~Gk~v~~eKP~~~~~~~  108 (315)
T 3c1a_A           65 VSAPEVEAVIIATPPATH--AEITLAA---IASGKAVLVEKPLTLDLAE  108 (315)
T ss_dssp             HTCTTCCEEEEESCGGGH--HHHHHHH---HHTTCEEEEESSSCSCHHH
T ss_pred             hhCCCCCEEEEeCChHHH--HHHHHHH---HHCCCcEEEcCCCcCCHHH
Confidence            43  79999999994433  3443333   22333 4544444555543

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=96.87  E-value=0.00088  Score=69.44  Aligned_cols=39  Identities=18%  Similarity=0.184  Sum_probs=35.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKG  344 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~  344 (721)
                      ++|.|||+|.||.+++..|++.|. +|+++||++++++..
T Consensus       142 ~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~l  181 (297)
T 2egg_A          142 KRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERL  181 (297)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHH
T ss_pred             CEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence            589999999999999999999998 999999999887654

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=96.86  E-value=0.00036  Score=75.00  Aligned_cols=96  Identities=20%  Similarity=0.182  Sum_probs=61.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCce--eccCc-ccc
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK--GVLDY-SEF  382 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~--~~~~~-~~l  382 (721)
                      ++|+|+|+|.+|..+++.+...|.+|+++|+++++++.+.+..          |.-.         ...  ...++ +.+
T Consensus       169 ~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~----------g~~~---------~~~~~~~~~l~~~l  229 (377)
T 2vhw_A          169 ADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEF----------CGRI---------HTRYSSAYELEGAV  229 (377)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT----------TTSS---------EEEECCHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhc----------CCee---------EeccCCHHHHHHHH
Confidence            6899999999999999999999999999999998876543210          1000         000  00112 345


Q ss_pred             CCCCEEEEcccCChH-HHHHHHHHHHhhCCCCeEEEecC
Q 004972          383 KDVDMVIEAVIESVP-LKQKIFSELEKACPPHCILATNT  420 (721)
Q Consensus       383 ~~aDlVIeavpe~~~-~k~~v~~~l~~~~~~~~ii~s~t  420 (721)
                      +++|+||+|++.... ...-+.++..+.++++.+|+..+
T Consensus       230 ~~aDvVi~~~~~p~~~t~~li~~~~l~~mk~g~~iV~va  268 (377)
T 2vhw_A          230 KRADLVIGAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIA  268 (377)
T ss_dssp             HHCSEEEECCCCTTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred             cCCCEEEECCCcCCCCCcceecHHHHhcCCCCcEEEEEe
Confidence            689999998852221 11111234445677888776544

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=96.84  E-value=0.0027  Score=67.63  Aligned_cols=98  Identities=18%  Similarity=0.119  Sum_probs=60.5

Q ss_pred             CCceeEEEEcCCCCcHHHHHHHHHC-CCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcc
Q 004972          303 RGVRKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS  380 (721)
Q Consensus       303 ~~~~kI~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  380 (721)
                      |+..||+|||+|.||...+..+.+. +++|+ ++|+++++++.+.           +.             .+...++++
T Consensus         3 m~~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~-----------~~-------------g~~~~~~~~   58 (359)
T 3e18_A            3 LKKYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAA-----------QK-------------GLKIYESYE   58 (359)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHH-----------TT-------------TCCBCSCHH
T ss_pred             CCcCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHH-----------hc-------------CCceeCCHH
Confidence            3446899999999999999988876 67775 7899998754321           11             123345553


Q ss_pred             -ccC--CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHH
Q 004972          381 -EFK--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV  428 (721)
Q Consensus       381 -~l~--~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l  428 (721)
                       .++  ++|+|++|+|.....  ++..+..+.  ..-+++.-.-+....+.
T Consensus        59 ~ll~~~~~D~V~i~tp~~~h~--~~~~~al~a--GkhVl~EKP~a~~~~ea  105 (359)
T 3e18_A           59 AVLADEKVDAVLIATPNDSHK--ELAISALEA--GKHVVCEKPVTMTSEDL  105 (359)
T ss_dssp             HHHHCTTCCEEEECSCGGGHH--HHHHHHHHT--TCEEEEESSCCSSHHHH
T ss_pred             HHhcCCCCCEEEEcCCcHHHH--HHHHHHHHC--CCCEEeeCCCcCCHHHH
Confidence             333  799999999954432  333333221  22355544444554433

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=96.84  E-value=0.0023  Score=68.25  Aligned_cols=186  Identities=12%  Similarity=0.030  Sum_probs=107.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  385 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  385 (721)
                      +||+|||.|.-|.+-|++|..+|.+|++--|.....+..     ..+.+..+.             ...+.+-.++++.|
T Consensus        38 K~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~-----~S~~~A~~~-------------Gf~v~~~~eA~~~A   99 (491)
T 3ulk_A           38 KKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKR-----ASWRKATEN-------------GFKVGTYEELIPQA   99 (491)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTC-----HHHHHHHHT-------------TCEEEEHHHHGGGC
T ss_pred             CEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCccccc-----chHHHHHHC-------------CCEecCHHHHHHhC
Confidence            799999999999999999999999998776633211110     001111222             24444444788999


Q ss_pred             CEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCC--cEEEecCCCCC----------CCCCee
Q 004972          386 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQD--RIIGAHFFSPA----------HVMPLL  453 (721)
Q Consensus       386 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~--r~ig~h~~~p~----------~~~~lv  453 (721)
                      |+|+.-+|+.  .-..++++|.++++++..+. -+.+..+..  .....|.  .++-+-|-.|-          .-.|.+
T Consensus       100 DvV~~L~PD~--~q~~vy~~I~p~lk~G~~L~-faHGFnI~~--~~i~pp~dvdVimVAPKgpG~~VR~~y~~G~GvP~l  174 (491)
T 3ulk_A          100 DLVINLTPDK--QHSDVVRTVQPLMKDGAALG-YSHGFNIVE--VGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTL  174 (491)
T ss_dssp             SEEEECSCGG--GHHHHHHHHGGGSCTTCEEE-ESSCHHHHT--TCCCCCTTSEEEEEEESSCHHHHHHHHHTTCCCCEE
T ss_pred             CEEEEeCChh--hHHHHHHHHHhhCCCCCEEE-ecCcccccc--cccccCCCcceEEeCCCCCcHHHHHHHHcCCCCceE
Confidence            9999999954  44577899999999998775 345554432  1222222  23333332221          112222


Q ss_pred             EEe-cCCCCCHHHHHHHHHHHHHcCCe---eEEE--cC--CCchhhhh-hhhHHHH----HHH-HHHHcCCCHHH
Q 004972          454 EIV-RTERTSAQVILDLMTVGKIIKKV---PVVV--GN--CTGFAVNR-AFFPYSQ----SAR-LLVSLGVDVFR  514 (721)
Q Consensus       454 Eiv-~~~~t~~e~~~~~~~l~~~lG~~---~v~v--~d--~~gfi~nR-l~~~~~~----Ea~-~l~~~Gv~~~~  514 (721)
                      --| +....+-.+.+.+..+...+|..   ++..  .+  ..-.+..| +++..+.    .++ .+++.|.+|+.
T Consensus       175 iAVhqeqD~sG~a~~~AlayA~aiG~~raGvieTTF~eEtetDLfGEQaVLcGgl~~li~agFetLveaGy~P~~  249 (491)
T 3ulk_A          175 IAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCGMLQAGSLLCFDKLVEEGTDPAY  249 (491)
T ss_dssp             EEECGGGCTTSCHHHHHHHHHHHHTGGGTCEEECCHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred             EEEEeCCCCchhHHHHHHHHHHhcCCCcCceeeccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence            223 11233456778888888998854   2222  11  11123333 2333333    334 46677998854

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=96.81  E-value=0.0011  Score=71.15  Aligned_cols=98  Identities=15%  Similarity=0.204  Sum_probs=59.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|+|+|+|.+|..+++.+...|.+|+++|+++++++.+.+.          .+.-       .........++ +.+++
T Consensus       167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~----------~g~~-------~~~~~~~~~~l~~~~~~  229 (369)
T 2eez_A          167 ASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDV----------FGGR-------VITLTATEANIKKSVQH  229 (369)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----------TTTS-------EEEEECCHHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh----------cCce-------EEEecCCHHHHHHHHhC
Confidence            689999999999999999999999999999999887654221          0100       00000000111 33568


Q ss_pred             CCEEEEcccCChH-HHHHHHHHHHhhCCCCeEEEecC
Q 004972          385 VDMVIEAVIESVP-LKQKIFSELEKACPPHCILATNT  420 (721)
Q Consensus       385 aDlVIeavpe~~~-~k~~v~~~l~~~~~~~~ii~s~t  420 (721)
                      +|+||.|++-... ...-+.++..+.++++.+|+..+
T Consensus       230 ~DvVi~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~  266 (369)
T 2eez_A          230 ADLLIGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVA  266 (369)
T ss_dssp             CSEEEECCC-------CCSCHHHHTTSCTTCEEEECC
T ss_pred             CCEEEECCCCCccccchhHHHHHHHhhcCCCEEEEEe
Confidence            9999999973321 11111244455567777666444

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=96.80  E-value=0.0015  Score=68.84  Aligned_cols=101  Identities=14%  Similarity=0.061  Sum_probs=59.1

Q ss_pred             CCCceeEEEEcCCCCcHHHHHHHHHC-CCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc
Q 004972          302 PRGVRKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  379 (721)
Q Consensus       302 ~~~~~kI~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  379 (721)
                      .+++.||+|||+|.||..++..+.+. +.+|+ ++|+++++++...           ++.           +.....+++
T Consensus         2 ~m~~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a-----------~~~-----------~~~~~~~~~   59 (329)
T 3evn_A            2 SLSKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFA-----------NKY-----------HLPKAYDKL   59 (329)
T ss_dssp             ---CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC--------------CC-----------CCSCEESCH
T ss_pred             CCCceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHH-----------HHc-----------CCCcccCCH
Confidence            34557899999999999999988765 45555 7899988754421           111           111245566


Q ss_pred             -cccC--CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHH
Q 004972          380 -SEFK--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV  428 (721)
Q Consensus       380 -~~l~--~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l  428 (721)
                       +.++  ++|+|++|+|....  .++.....+.  ..-+++...-+....+.
T Consensus        60 ~~ll~~~~~D~V~i~tp~~~h--~~~~~~al~a--Gk~Vl~EKP~a~~~~e~  107 (329)
T 3evn_A           60 EDMLADESIDVIYVATINQDH--YKVAKAALLA--GKHVLVEKPFTLTYDQA  107 (329)
T ss_dssp             HHHHTCTTCCEEEECSCGGGH--HHHHHHHHHT--TCEEEEESSCCSSHHHH
T ss_pred             HHHhcCCCCCEEEECCCcHHH--HHHHHHHHHC--CCeEEEccCCcCCHHHH
Confidence             3344  79999999995443  2333333221  22355554445555443

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=96.80  E-value=0.0039  Score=66.11  Aligned_cols=108  Identities=14%  Similarity=0.155  Sum_probs=64.6

Q ss_pred             ceeEEEEc-CCCCcHHHHHHHHHCCC--c---eEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceec-c
Q 004972          305 VRKVAVIG-GGLMGSGIATAHILNNI--Y---VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-L  377 (721)
Q Consensus       305 ~~kI~VIG-~G~mG~~iA~~la~~G~--~---V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~  377 (721)
                      ..||+|+| +|.+|.+++..++..+.  +   |.++|.+.+..+...+...-.    +..+..      ..+..+..+ .
T Consensus        32 ~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amD----L~h~~~------p~~~~v~i~~~  101 (375)
T 7mdh_A           32 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAME----LEDSLY------PLLREVSIGID  101 (375)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHH----HHTTTC------TTEEEEEEESC
T ss_pred             CCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHh----HHhhhh------hhcCCcEEecC
Confidence            36899999 79999999999999876  3   888766544322211111000    111110      011223334 3


Q ss_pred             CccccCCCCEEEEcc--cC------------ChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972          378 DYSEFKDVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILATNTST  422 (721)
Q Consensus       378 ~~~~l~~aDlVIeav--pe------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~  422 (721)
                      +++++++||+||.+.  |-            |..+.+.+...+.++..++++++..|..
T Consensus       102 ~y~~~~daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNP  160 (375)
T 7mdh_A          102 PYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNP  160 (375)
T ss_dssp             HHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred             CHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc
Confidence            468899999999865  21            2345555556677776677777665544

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=96.80  E-value=0.0013  Score=66.75  Aligned_cols=65  Identities=15%  Similarity=0.087  Sum_probs=50.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  385 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  385 (721)
                      ++|.|||+|-||.+++..|++.|.+|++++|++++++... .+                      + +.. .+++.+.++
T Consensus       119 k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la-~~----------------------~-~~~-~~~~~l~~~  173 (269)
T 3phh_A          119 QNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQ-RL----------------------G-CDC-FMEPPKSAF  173 (269)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHH-HH----------------------T-CEE-ESSCCSSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HC----------------------C-CeE-ecHHHhccC
Confidence            4899999999999999999999999999999998876542 11                      0 111 123445589


Q ss_pred             CEEEEcccCC
Q 004972          386 DMVIEAVIES  395 (721)
Q Consensus       386 DlVIeavpe~  395 (721)
                      |+||.|+|-.
T Consensus       174 DiVInaTp~G  183 (269)
T 3phh_A          174 DLIINATSAS  183 (269)
T ss_dssp             SEEEECCTTC
T ss_pred             CEEEEcccCC
Confidence            9999999843

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=96.75  E-value=0.0038  Score=66.41  Aligned_cols=100  Identities=15%  Similarity=0.176  Sum_probs=62.0

Q ss_pred             CCCceeEEEEcCCCCcHHHHHHHH-H-CCCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhc-Cceecc
Q 004972          302 PRGVRKVAVIGGGLMGSGIATAHI-L-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALK-MLKGVL  377 (721)
Q Consensus       302 ~~~~~kI~VIG~G~mG~~iA~~la-~-~G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~i~~~~  377 (721)
                      .|+..||+|||+|.||...+..+. + .+.+|+ ++|+++++++...+.                      .+ .....+
T Consensus        20 ~m~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~----------------------~g~~~~~~~   77 (357)
T 3ec7_A           20 QGMTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDK----------------------YAIEAKDYN   77 (357)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHH----------------------HTCCCEEES
T ss_pred             CCCeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHH----------------------hCCCCeeeC
Confidence            344568999999999999999998 4 467766 899999887664321                      11 134456


Q ss_pred             Ccc-ccC--CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHH
Q 004972          378 DYS-EFK--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI  427 (721)
Q Consensus       378 ~~~-~l~--~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~  427 (721)
                      +++ .++  ++|+|++|+|....  .++.....+.  ..-+++.-.-+....+
T Consensus        78 ~~~~ll~~~~~D~V~i~tp~~~h--~~~~~~al~a--Gk~Vl~EKPla~~~~e  126 (357)
T 3ec7_A           78 DYHDLINDKDVEVVIITASNEAH--ADVAVAALNA--NKYVFCEKPLAVTAAD  126 (357)
T ss_dssp             SHHHHHHCTTCCEEEECSCGGGH--HHHHHHHHHT--TCEEEEESSSCSSHHH
T ss_pred             CHHHHhcCCCCCEEEEcCCcHHH--HHHHHHHHHC--CCCEEeecCccCCHHH
Confidence            663 333  68999999995443  3333333221  2235544444455544

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=96.71  E-value=0.029  Score=62.23  Aligned_cols=143  Identities=15%  Similarity=0.082  Sum_probs=92.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEE
Q 004972           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (721)
Q Consensus        25 ~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaa  104 (721)
                      .-++.+...+.+..+++.+.+. .+-+|.|.-.|+     +.+.+-.....  ....+...+ ..+ ..+.....|+|++
T Consensus       134 gGS~g~~~~~Ki~ra~e~A~~~-~lPvI~l~dSgG-----ARl~~q~~~~~--~~~~~~~i~-~~~-~~ls~~giP~Isv  203 (555)
T 3u9r_B          134 GGTYYPLTVKKHLRAQAIALEN-RLPCIYLVDSGG-----ANLPRQDEVFP--DREHFGRIF-FNQ-ANMSARGIPQIAV  203 (555)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECCCC-----BCGGGGGGTSS--STTSTTHHH-HHH-HHHHHTTCCEEEE
T ss_pred             cCCCCHHHHHHHHHHHHHHHHc-CCCEEEEECCCC-----CCCCCcceeec--ccccHHHHH-HHH-HHHhcCCCCEEEE
Confidence            4788899999999999988765 345666654333     33321111000  011122222 222 2356678999999


Q ss_pred             ECCcccccchHhhhhcCEEEeeC-CceEeCcccccCccccccccccccCHHHHHHHHHcCCCcCHHHH-------HHcCC
Q 004972          105 VEGLALGGGLELAMGCHARIAAP-KTQLGLPELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSEEG-------WKLGL  176 (721)
Q Consensus       105 v~G~a~GgG~~lalacD~ria~~-~a~~~~pe~~~Gl~P~~~~l~r~~G~~~a~~l~ltg~~~~a~eA-------~~~Gl  176 (721)
                      |.|.|.|||......||++|+.+ ++.+++.                 |+....  ..+|+.+++++.       ...|+
T Consensus       204 v~G~~~GGga~~~a~~d~vim~e~~a~i~~a-----------------GP~vik--~~~ge~~~~e~LGGa~~h~~~sGv  264 (555)
T 3u9r_B          204 VMGSCTAGGAYVPAMSDETVMVREQATIFLA-----------------GPPLVK--AATGEVVSAEELGGADVHCKVSGV  264 (555)
T ss_dssp             ECSCCBGGGGHHHHTSSEEEEETTTCBCBSS-----------------CHHHHH--HHHCCCCCHHHHHBHHHHHHTTCS
T ss_pred             EecCCCccHHHHHHhCCceEEecCCceEEEc-----------------cHHHHH--HHhcCccChhhccchhhhhhccCc
Confidence            99999999999999999998875 4554442                 332221  257899999988       78999


Q ss_pred             ccEEcCCchHHHHHHHHHHHHHh
Q 004972          177 IDAVVTSEELLKVSRLWALDIAA  199 (721)
Q Consensus       177 v~~vv~~~~l~~~a~~~a~~~a~  199 (721)
                      +|.++++++   .+...++++.+
T Consensus       265 ~d~v~~de~---~a~~~~r~~ls  284 (555)
T 3u9r_B          265 ADHYAEDDD---HALAIARRCVA  284 (555)
T ss_dssp             CSEEESSHH---HHHHHHHHHHH
T ss_pred             eeEEeCCHH---HHHHHHHHHHH
Confidence            999997653   34444445433

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=96.71  E-value=0.0048  Score=65.26  Aligned_cols=95  Identities=14%  Similarity=0.145  Sum_probs=60.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHH-H-CCCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhc-CceeccCccc
Q 004972          306 RKVAVIGGGLMGSGIATAHI-L-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALK-MLKGVLDYSE  381 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la-~-~G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~i~~~~~~~~  381 (721)
                      .||+|||+|.||...+..+. + .+++|+ ++|+++++++...+.                      .+ .....++++.
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~----------------------~g~~~~~~~~~~~   60 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQ----------------------YQLNATVYPNDDS   60 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHH----------------------TTCCCEEESSHHH
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHH----------------------hCCCCeeeCCHHH
Confidence            58999999999999999998 4 467766 899999887654221                      11 1344566633


Q ss_pred             -cC--CCCEEEEcccCChHHHHHHHHHHHhhCCCC-eEEEecCCCCCHHH
Q 004972          382 -FK--DVDMVIEAVIESVPLKQKIFSELEKACPPH-CILATNTSTIDLNI  427 (721)
Q Consensus       382 -l~--~aDlVIeavpe~~~~k~~v~~~l~~~~~~~-~ii~s~ts~~~i~~  427 (721)
                       ++  ++|+|++|+|....  .++..+..   ..+ -+++.-.-+....+
T Consensus        61 ll~~~~~D~V~i~tp~~~h--~~~~~~al---~~Gk~vl~EKP~a~~~~e  105 (344)
T 3mz0_A           61 LLADENVDAVLVTSWGPAH--ESSVLKAI---KAQKYVFCEKPLATTAEG  105 (344)
T ss_dssp             HHHCTTCCEEEECSCGGGH--HHHHHHHH---HTTCEEEECSCSCSSHHH
T ss_pred             HhcCCCCCEEEECCCchhH--HHHHHHHH---HCCCcEEEcCCCCCCHHH
Confidence             43  59999999995443  23333332   233 34544343455544

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=96.70  E-value=0.0054  Score=64.39  Aligned_cols=68  Identities=19%  Similarity=0.127  Sum_probs=47.6

Q ss_pred             eEEEEcCCCCcHHH-HHHHHHCCCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972          307 KVAVIGGGLMGSGI-ATAHILNNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  383 (721)
Q Consensus       307 kI~VIG~G~mG~~i-A~~la~~G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  383 (721)
                      ||+|||+|.||..+ +..+.+.|++|+ ++|+++++++...+.          -+            .....+++ +.++
T Consensus         2 ~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~----------~g------------~~~~~~~~~~~l~   59 (332)
T 2glx_A            2 RWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATE----------NG------------IGKSVTSVEELVG   59 (332)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHH----------TT------------CSCCBSCHHHHHT
T ss_pred             eEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHH----------cC------------CCcccCCHHHHhc
Confidence            79999999999998 777777788865 899999886653211          01            11124455 3343


Q ss_pred             --CCCEEEEcccCCh
Q 004972          384 --DVDMVIEAVIESV  396 (721)
Q Consensus       384 --~aDlVIeavpe~~  396 (721)
                        ++|+|++|+|...
T Consensus        60 ~~~~D~V~i~tp~~~   74 (332)
T 2glx_A           60 DPDVDAVYVSTTNEL   74 (332)
T ss_dssp             CTTCCEEEECSCGGG
T ss_pred             CCCCCEEEEeCChhH
Confidence              5999999999443

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=96.69  E-value=0.0025  Score=67.86  Aligned_cols=100  Identities=12%  Similarity=0.048  Sum_probs=60.9

Q ss_pred             CCceeEEEEcCCCCcHH-HHHHHHHC-CCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc
Q 004972          303 RGVRKVAVIGGGLMGSG-IATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  379 (721)
Q Consensus       303 ~~~~kI~VIG~G~mG~~-iA~~la~~-G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  379 (721)
                      |+..||+|||+|.||.. ++..+.+. +.+|+ ++|+++++++...           +.           .+.....+++
T Consensus         3 M~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a-----------~~-----------~~~~~~~~~~   60 (359)
T 3m2t_A            3 LSLIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVH-----------RF-----------ISDIPVLDNV   60 (359)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGG-----------GT-----------SCSCCEESSH
T ss_pred             CCcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHH-----------Hh-----------cCCCcccCCH
Confidence            34568999999999985 88888775 67776 8999998865431           11           1223445666


Q ss_pred             cc-cC--CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHH
Q 004972          380 SE-FK--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV  428 (721)
Q Consensus       380 ~~-l~--~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l  428 (721)
                      +. ++  +.|+|++|+|  ...-.++..+..+.  ..-+++.-.-+....+.
T Consensus        61 ~~ll~~~~vD~V~i~tp--~~~H~~~~~~al~a--GkhVl~EKPla~~~~e~  108 (359)
T 3m2t_A           61 PAMLNQVPLDAVVMAGP--PQLHFEMGLLAMSK--GVNVFVEKPPCATLEEL  108 (359)
T ss_dssp             HHHHHHSCCSEEEECSC--HHHHHHHHHHHHHT--TCEEEECSCSCSSHHHH
T ss_pred             HHHhcCCCCCEEEEcCC--cHHHHHHHHHHHHC--CCeEEEECCCcCCHHHH
Confidence            43 43  5699999999  33333444333221  22245443334554443

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=96.68  E-value=0.031  Score=62.23  Aligned_cols=134  Identities=15%  Similarity=0.056  Sum_probs=88.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHh--hCCCcEE
Q 004972           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE--DCKKPIV  102 (721)
Q Consensus        25 ~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~p~I  102 (721)
                      .-++.....+.+..+++.+.++ .+-+|.|.-     |.|+.+.+-..        .+. .+...+ ..+.  .-..|.|
T Consensus       121 gGS~g~~~~~Ki~ra~e~A~~~-~lP~I~l~d-----SGGARmqeg~~--------sl~-~~~~i~-~~~~~~s~~iP~I  184 (548)
T 2bzr_A          121 GGSLGEVYGEKIVKVQELAIKT-GRPLIGIND-----GAGARIQEGVV--------SLG-LYSRIF-RNNILASGVIPQI  184 (548)
T ss_dssp             GGCCCHHHHHHHHHHHHHHHHH-TCCEEEEEC-----CCSCCGGGTTH--------HHH-HHHHHH-HHHHHTTTTSCEE
T ss_pred             cCCCChhHHHHHHHHHHHHHHc-CCCEEEEEc-----CCCCCchhHHH--------HHH-HHHHHH-HHHHHhcCCCcEE
Confidence            4789999999999999988765 455677765     44555543211        111 111222 1122  3349999


Q ss_pred             EEECCcccccchHhhhhcCEEEeeCC-ceEeCcccccCccccccccccccCHHHHHHHHHcCCCcCHH-----H--HHHc
Q 004972          103 AAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSE-----E--GWKL  174 (721)
Q Consensus       103 aav~G~a~GgG~~lalacD~ria~~~-a~~~~pe~~~Gl~P~~~~l~r~~G~~~a~~l~ltg~~~~a~-----e--A~~~  174 (721)
                      +++.|+|.||+......||++|+.++ +.+++.                 |+.....  .+|+.++.+     +  +.+.
T Consensus       185 svv~gp~~GG~a~s~al~D~ii~~~~~a~i~~a-----------------GP~vI~~--~~ge~v~~e~lggae~h~~~s  245 (548)
T 2bzr_A          185 SLIMGAAAGGHVYSPALTDFVIMVDQTSQMFIT-----------------GPDVIKT--VTGEEVTMEELGGAHTHMAKS  245 (548)
T ss_dssp             EEECSEEESGGGHHHHHSSEEEEETTTCEEESS-----------------CHHHHHH--HHCCCCCHHHHHBHHHHHHTS
T ss_pred             EEecCCCchHHHHHHHhCCeEEeccCceeEEec-----------------cHHHHHH--HhCCcCChHhcccHHHHhhcc
Confidence            99999999999988889999999986 888775                 3332222  468888764     2  2368


Q ss_pred             CCccEEcCCc-hHHHHHHHH
Q 004972          175 GLIDAVVTSE-ELLKVSRLW  193 (721)
Q Consensus       175 Glv~~vv~~~-~l~~~a~~~  193 (721)
                      |++|.+++++ ++.+.+..+
T Consensus       246 G~~d~vv~d~~~~~~~~r~l  265 (548)
T 2bzr_A          246 GTAHYAASGEQDAFDYVREL  265 (548)
T ss_dssp             SCCSEEESSHHHHHHHHHHH
T ss_pred             CceeEEeCCHHHHHHHHHHH
Confidence            9999999754 344444433

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=96.67  E-value=0.006  Score=55.83  Aligned_cols=101  Identities=13%  Similarity=0.069  Sum_probs=64.4

Q ss_pred             eeEEEEcC----CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccc
Q 004972          306 RKVAVIGG----GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  381 (721)
Q Consensus       306 ~kI~VIG~----G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  381 (721)
                      ++|+|||+    |.+|..++..|.+.|++  +|++++.. +.                          ...+....++++
T Consensus        23 ~~iaVVGas~~~g~~G~~~~~~l~~~G~~--v~~Vnp~~-~~--------------------------i~G~~~y~sl~~   73 (144)
T 2d59_A           23 KKIALVGASPKPERDANIVMKYLLEHGYD--VYPVNPKY-EE--------------------------VLGRKCYPSVLD   73 (144)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCE--EEEECTTC-SE--------------------------ETTEECBSSGGG
T ss_pred             CEEEEEccCCCCCchHHHHHHHHHHCCCE--EEEECCCC-Ce--------------------------ECCeeccCCHHH
Confidence            57999999    79999999999999997  56666542 00                          012444455544


Q ss_pred             c-CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccC-CCCcEEE
Q 004972          382 F-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTS-SQDRIIG  440 (721)
Q Consensus       382 l-~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~-~~~r~ig  440 (721)
                      + ..+|++|.++|  .+...+++.++.+.- ...++..  ++..-.++.+... ..-+++|
T Consensus        74 l~~~vDlvvi~vp--~~~~~~vv~~~~~~g-i~~i~~~--~g~~~~~l~~~a~~~Gi~vvG  129 (144)
T 2d59_A           74 IPDKIEVVDLFVK--PKLTMEYVEQAIKKG-AKVVWFQ--YNTYNREASKKADEAGLIIVA  129 (144)
T ss_dssp             CSSCCSEEEECSC--HHHHHHHHHHHHHHT-CSEEEEC--TTCCCHHHHHHHHHTTCEEEE
T ss_pred             cCCCCCEEEEEeC--HHHHHHHHHHHHHcC-CCEEEEC--CCchHHHHHHHHHHcCCEEEc
Confidence            4 57999999999  677778887766543 3355543  3333344444332 3345554

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=96.65  E-value=0.0034  Score=57.15  Aligned_cols=103  Identities=11%  Similarity=0.033  Sum_probs=65.3

Q ss_pred             eeEEEEcC----CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccc
Q 004972          306 RKVAVIGG----GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  381 (721)
Q Consensus       306 ~kI~VIG~----G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  381 (721)
                      ++|+|||+    |.||..++..|.+.|++  +|++++.....                         ....+....++++
T Consensus        14 ~~vaVvGas~~~g~~G~~~~~~l~~~G~~--v~~vnp~~~~~-------------------------~i~G~~~~~sl~e   66 (140)
T 1iuk_A           14 KTIAVLGAHKDPSRPAHYVPRYLREQGYR--VLPVNPRFQGE-------------------------ELFGEEAVASLLD   66 (140)
T ss_dssp             CEEEEETCCSSTTSHHHHHHHHHHHTTCE--EEEECGGGTTS-------------------------EETTEECBSSGGG
T ss_pred             CEEEEECCCCCCCChHHHHHHHHHHCCCE--EEEeCCCcccC-------------------------cCCCEEecCCHHH
Confidence            57999999    89999999999999997  66777653100                         0012444555544


Q ss_pred             c-CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccC-CCCcEEE
Q 004972          382 F-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTS-SQDRIIG  440 (721)
Q Consensus       382 l-~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~-~~~r~ig  440 (721)
                      + ...|++|.++|  .+...+++.++.+.-.. .+++. +++. -.++.+... ..-+++|
T Consensus        67 l~~~vDlavi~vp--~~~~~~v~~~~~~~gi~-~i~~~-~g~~-~~~~~~~a~~~Gir~vg  122 (140)
T 1iuk_A           67 LKEPVDILDVFRP--PSALMDHLPEVLALRPG-LVWLQ-SGIR-HPEFEKALKEAGIPVVA  122 (140)
T ss_dssp             CCSCCSEEEECSC--HHHHTTTHHHHHHHCCS-CEEEC-TTCC-CHHHHHHHHHTTCCEEE
T ss_pred             CCCCCCEEEEEeC--HHHHHHHHHHHHHcCCC-EEEEc-CCcC-HHHHHHHHHHcCCEEEc
Confidence            4 56999999999  67777778776654333 45433 3333 344443332 3345554

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=96.64  E-value=0.0021  Score=65.61  Aligned_cols=40  Identities=15%  Similarity=0.161  Sum_probs=36.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  345 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  345 (721)
                      ++|.|+|+|.||.+++..|++.|.+|++++|++++++...
T Consensus       120 ~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~  159 (272)
T 1p77_A          120 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELA  159 (272)
T ss_dssp             CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            5899999999999999999999999999999998876653

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=96.64  E-value=0.0048  Score=62.89  Aligned_cols=65  Identities=15%  Similarity=0.097  Sum_probs=49.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  384 (721)
                      ++|.|||+|-||.+++..|+..|. +|++++|+.++++...+.+          +             .....+.. +.+
T Consensus       120 ~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~----------~-------------~~~~~~~~-~~~  175 (271)
T 1npy_A          120 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALY----------G-------------YAYINSLE-NQQ  175 (271)
T ss_dssp             SCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHH----------T-------------CEEESCCT-TCC
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc----------C-------------Cccchhhh-ccc
Confidence            579999999999999999999997 8999999998876643211          0             01111222 468


Q ss_pred             CCEEEEcccC
Q 004972          385 VDMVIEAVIE  394 (721)
Q Consensus       385 aDlVIeavpe  394 (721)
                      +|+||.|+|-
T Consensus       176 ~DivInaTp~  185 (271)
T 1npy_A          176 ADILVNVTSI  185 (271)
T ss_dssp             CSEEEECSST
T ss_pred             CCEEEECCCC
Confidence            9999999983

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=96.62  E-value=0.0022  Score=65.68  Aligned_cols=40  Identities=10%  Similarity=0.091  Sum_probs=36.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI  345 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~  345 (721)
                      ++|.|+|+|-||.+++..|++.|. +|++++|++++++...
T Consensus       127 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la  167 (281)
T 3o8q_A          127 ATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLA  167 (281)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHH
T ss_pred             CEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHH
Confidence            589999999999999999999996 9999999998877654

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=96.57  E-value=0.032  Score=61.81  Aligned_cols=148  Identities=15%  Similarity=0.087  Sum_probs=94.6

Q ss_pred             EEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHH
Q 004972           15 VAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL   93 (721)
Q Consensus        15 v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (721)
                      |+++..+-. ..-++.....+.+..+++.+.++ .+-+|.|+.     |.|+.+.+-...     ...+.+.+.... + 
T Consensus        97 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~-~lP~I~l~~-----SGGARmqeg~~s-----l~~~~~i~~~~~-~-  163 (523)
T 1on3_A           97 VHAASQDFTVMGGSAGETQSTKVVETMEQALLT-GTPFLFFYD-----SGGARIQEGIDS-----LSGYGKMFFANV-K-  163 (523)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEE-----ECSBCGGGTHHH-----HHHHHHHHHHHH-H-
T ss_pred             EEEEEEcCCccCCcCcHHHHHHHHHHHHHHHHc-CCCEEEEEc-----CCCCChhhHHHH-----HHHHHHHHHHHH-H-
Confidence            333333333 24789999999999999988765 455677765     445555432110     001111111111 1 


Q ss_pred             HhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCccccccccccccCHHHHHHHHHcCCCcCHH----
Q 004972           94 IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSE----  169 (721)
Q Consensus        94 l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~~~~l~r~~G~~~a~~l~ltg~~~~a~----  169 (721)
                      + .-..|.|+++.|+|.||+......||++|+.+++.+++.                 |+.....  .+|+.++.+    
T Consensus       164 ~-s~~iP~Isvv~gp~~GG~a~s~~l~D~ii~~~~a~i~~a-----------------GP~vI~~--~~ge~~~~e~lgg  223 (523)
T 1on3_A          164 L-SGVVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFIT-----------------GPQVIKS--VTGEDVTADELGG  223 (523)
T ss_dssp             H-TTTSCEEEEEEEEEESGGGHHHHHSSEEEEETTCEEESS-----------------CHHHHHH--HHCCCCCHHHHHS
T ss_pred             h-cCCCCEEEEEcCCCchHHHHHHhhCCeEEEeCCCEEEec-----------------CHHHHHH--HhCCcCChHhccc
Confidence            2 344999999999999999999999999999999988876                 3332222  467888764    


Q ss_pred             -HHH--HcCCccEEcCCc-hHHHHHHHHHH
Q 004972          170 -EGW--KLGLIDAVVTSE-ELLKVSRLWAL  195 (721)
Q Consensus       170 -eA~--~~Glv~~vv~~~-~l~~~a~~~a~  195 (721)
                       +.+  +.|++|.+++++ ++.+.+..+..
T Consensus       224 ae~h~~~~G~vd~vv~d~~~~~~~~r~lL~  253 (523)
T 1on3_A          224 AEAHMAISGNIHFVAEDDDAAELIAKKLLS  253 (523)
T ss_dssp             HHHHHHTTCCCSEEESSHHHHHHHHHHHHH
T ss_pred             HHHHhhccCceEEEeCCHHHHHHHHHHHHH
Confidence             223  689999999853 45555555443

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.56  E-value=0.0083  Score=65.01  Aligned_cols=39  Identities=13%  Similarity=0.168  Sum_probs=36.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  344 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  344 (721)
                      ++|.|+|.|.+|..++..|...|++|+++|.+++.++.+
T Consensus         5 ~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~   43 (413)
T 3l9w_A            5 MRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETL   43 (413)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHH
Confidence            479999999999999999999999999999999998765

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=96.56  E-value=0.004  Score=63.53  Aligned_cols=39  Identities=13%  Similarity=0.131  Sum_probs=36.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  344 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  344 (721)
                      ++|.|+|+|.||.+++..|++.|.+|+++||++++++..
T Consensus       120 k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~l  158 (271)
T 1nyt_A          120 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEEL  158 (271)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHH
Confidence            589999999999999999999999999999999887654

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=96.55  E-value=0.0045  Score=65.67  Aligned_cols=39  Identities=18%  Similarity=0.190  Sum_probs=35.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  344 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  344 (721)
                      ++|+|+|+|.||..+|..|...|.+|+++|+++++++..
T Consensus       174 ktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~  212 (364)
T 1leh_A          174 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAA  212 (364)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            589999999999999999999999999999999876654

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=96.52  E-value=0.035  Score=61.59  Aligned_cols=140  Identities=16%  Similarity=0.102  Sum_probs=92.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEE
Q 004972           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (721)
Q Consensus        25 ~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaa  104 (721)
                      .-++.....+.+..+++.+.+. .+-+|.|+.     |.|+.+.+-...     ...+.+.+.+.. + + .-..|.|++
T Consensus       104 gGS~g~~~~~Ki~ra~e~A~~~-~~P~I~l~~-----SGGaRmqeg~~s-----l~~~~~i~~~~~-~-~-s~~iP~Isv  169 (522)
T 1x0u_A          104 GGSLGETHANKIVRAYELALKV-GAPVVGIND-----SGGARIQEGALS-----LEGYGAVFKMNV-M-A-SGVIPQITI  169 (522)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEC-----CCSBCGGGTHHH-----HHHHHHHHHHHH-H-H-TTTSCEEEE
T ss_pred             CccccHHHHHHHHHHHHHHHHc-CCCEEEEEc-----CCCCChhHHHHH-----HHHHHHHHHHHH-H-h-CCCCcEEEE
Confidence            4789999999999999988765 455677775     455655432110     001111111111 1 2 345999999


Q ss_pred             ECCcccccchHhhhhcCEEEeeCC-c-eEeCcccccCccccccccccccCHHHHHHHHHcCCCcCHH-----HHH--HcC
Q 004972          105 VEGLALGGGLELAMGCHARIAAPK-T-QLGLPELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSE-----EGW--KLG  175 (721)
Q Consensus       105 v~G~a~GgG~~lalacD~ria~~~-a-~~~~pe~~~Gl~P~~~~l~r~~G~~~a~~l~ltg~~~~a~-----eA~--~~G  175 (721)
                      +.|+|.||+......||++|+.++ + .+++.                 |+.....  .+|+.++.+     +.+  +.|
T Consensus       170 v~gp~~GG~a~s~~l~D~~i~~~~~a~~i~~a-----------------GP~vI~~--~~ge~~~~e~lggae~~~~~~G  230 (522)
T 1x0u_A          170 MAGPAAGGAVYSPALTDFIIMIKGDAYYMFVT-----------------GPEITKV--VLGEEVSFQDLGGAVVHATKSG  230 (522)
T ss_dssp             ECSEEEGGGGHHHHHSSEEEEECSTTCEEESS-----------------CHHHHHH--TTCCCCCHHHHHBHHHHHHTTC
T ss_pred             EcCCCchHHHHHHhcCCeEEEecCCccEEEec-----------------CHHHHHH--HhCCcCChhhcchHHHHhhcCc
Confidence            999999999998899999999987 7 77764                 3222221  467787764     222  689


Q ss_pred             CccEEcCC-chHHHHHHHHHHHH
Q 004972          176 LIDAVVTS-EELLKVSRLWALDI  197 (721)
Q Consensus       176 lv~~vv~~-~~l~~~a~~~a~~~  197 (721)
                      ++|.++++ .++.+.+.++..-+
T Consensus       231 ~~d~vv~~~~~~~~~~~~ll~~l  253 (522)
T 1x0u_A          231 VVHFMVDSEQEAINLTKRLLSYL  253 (522)
T ss_dssp             CCSEEESCHHHHHHHHHHHHHHS
T ss_pred             eeEEEeCCHHHHHHHHHHHHHhc
Confidence            99999985 45666655555443

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=96.52  E-value=0.0033  Score=67.17  Aligned_cols=39  Identities=33%  Similarity=0.339  Sum_probs=34.0

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  344 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  344 (721)
                      -+||.|||+|.+|+.+|..|++ .++|+++|++.++++++
T Consensus        16 ~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~   54 (365)
T 3abi_A           16 HMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKV   54 (365)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHH
T ss_pred             ccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHH
Confidence            3589999999999999998865 58999999999887764

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.42  E-value=0.0041  Score=62.64  Aligned_cols=33  Identities=15%  Similarity=0.311  Sum_probs=31.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  338 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~  338 (721)
                      ++|.|||+|.+|+.+|..|++.|. +|+++|.+.
T Consensus        32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            589999999999999999999997 899999987

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=96.41  E-value=0.00054  Score=70.07  Aligned_cols=38  Identities=13%  Similarity=0.117  Sum_probs=34.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLK  343 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~  343 (721)
                      ++|.|||+|-||.+++..|++.|. +|++++|++++++.
T Consensus       118 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~  156 (277)
T 3don_A          118 AYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNN  156 (277)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTT
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence            579999999999999999999999 99999999887443

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=96.40  E-value=0.0035  Score=64.30  Aligned_cols=43  Identities=16%  Similarity=0.286  Sum_probs=37.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTI  348 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~~  348 (721)
                      +++.|+|+|-+|.+++..|+..|. +|++++|++++++...+.+
T Consensus       128 k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~  171 (283)
T 3jyo_A          128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVI  171 (283)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence            589999999999999999999998 6999999999887665433

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=96.39  E-value=0.0048  Score=64.07  Aligned_cols=84  Identities=14%  Similarity=0.061  Sum_probs=50.0

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHC-CCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcccc
Q 004972          305 VRKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  382 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l  382 (721)
                      ..||+|||+|.||..++..+.+. +++|+ ++|+++++++.              .| +          .....+++...
T Consensus         9 ~irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~--------------~g-~----------~~~~~~~l~~~   63 (304)
T 3bio_A            9 KIRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPF--------------EL-Q----------PFRVVSDIEQL   63 (304)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC---------------------CC-T----------TSCEESSGGGS
T ss_pred             CCEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHH--------------cC-C----------CcCCHHHHHhC
Confidence            45899999999999999999874 67877 79999876431              11 0          01113344334


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEe
Q 004972          383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT  418 (721)
Q Consensus       383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s  418 (721)
                      .++|+||+|+|  ...-.++...   .+..+.-+++
T Consensus        64 ~~~DvViiatp--~~~h~~~~~~---al~aG~~Vi~   94 (304)
T 3bio_A           64 ESVDVALVCSP--SREVERTALE---ILKKGICTAD   94 (304)
T ss_dssp             SSCCEEEECSC--HHHHHHHHHH---HHTTTCEEEE
T ss_pred             CCCCEEEECCC--chhhHHHHHH---HHHcCCeEEE
Confidence            78999999999  4333344333   3344544444

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=96.39  E-value=0.0054  Score=67.11  Aligned_cols=87  Identities=17%  Similarity=0.176  Sum_probs=60.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  385 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  385 (721)
                      ++|.|+|+|.+|.++|..|+..|.+|+++|+++...+.+..           .+             ....+..+.+..+
T Consensus       266 KtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~-----------~g-------------~dv~~lee~~~~a  321 (488)
T 3ond_A          266 KVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATM-----------EG-------------LQVLTLEDVVSEA  321 (488)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TT-------------CEECCGGGTTTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH-----------hC-------------CccCCHHHHHHhc
Confidence            58999999999999999999999999999999987655421           11             1222222557889


Q ss_pred             CEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecC
Q 004972          386 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  420 (721)
Q Consensus       386 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t  420 (721)
                      |+|+++....-.+..+    ....++++.+|+...
T Consensus       322 DvVi~atG~~~vl~~e----~l~~mk~gaiVvNaG  352 (488)
T 3ond_A          322 DIFVTTTGNKDIIMLD----HMKKMKNNAIVCNIG  352 (488)
T ss_dssp             SEEEECSSCSCSBCHH----HHTTSCTTEEEEESS
T ss_pred             CEEEeCCCChhhhhHH----HHHhcCCCeEEEEcC
Confidence            9999886422222222    344568888886544

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=96.33  E-value=0.016  Score=61.65  Aligned_cols=73  Identities=14%  Similarity=0.100  Sum_probs=49.6

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHC-CCce-EEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcc-c
Q 004972          305 VRKVAVIGGGLMGSGIATAHILN-NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-E  381 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~-G~~V-~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~  381 (721)
                      +.||+|||+|.||..++..+... ++++ .++|+++++++...+.          -+ +.        ......++++ .
T Consensus         6 ~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~----------~~-~~--------~~~~~~~~~~~l   66 (362)
T 1ydw_A            6 QIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATA----------NN-YP--------ESTKIHGSYESL   66 (362)
T ss_dssp             CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHH----------TT-CC--------TTCEEESSHHHH
T ss_pred             ceEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHH----------hC-CC--------CCCeeeCCHHHH
Confidence            45899999999999999998875 5665 5899999876553211          01 00        0133445663 3


Q ss_pred             cC--CCCEEEEcccCCh
Q 004972          382 FK--DVDMVIEAVIESV  396 (721)
Q Consensus       382 l~--~aDlVIeavpe~~  396 (721)
                      ++  ++|+|++|+|...
T Consensus        67 l~~~~~D~V~i~tp~~~   83 (362)
T 1ydw_A           67 LEDPEIDALYVPLPTSL   83 (362)
T ss_dssp             HHCTTCCEEEECCCGGG
T ss_pred             hcCCCCCEEEEcCChHH
Confidence            43  6999999999444

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=96.33  E-value=0.0026  Score=68.93  Aligned_cols=70  Identities=19%  Similarity=0.331  Sum_probs=49.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  383 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  383 (721)
                      ++|+|||+|.||..+++.+...|. +|+++|+++++++.....+          |.          ..+. .+++ +.+.
T Consensus       168 ~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~----------g~----------~~~~-~~~l~~~l~  226 (404)
T 1gpj_A          168 KTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL----------GG----------EAVR-FDELVDHLA  226 (404)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHH----------TC----------EECC-GGGHHHHHH
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc----------CC----------ceec-HHhHHHHhc
Confidence            589999999999999999999998 8999999998764322110          10          0011 1222 3457


Q ss_pred             CCCEEEEcccCCh
Q 004972          384 DVDMVIEAVIESV  396 (721)
Q Consensus       384 ~aDlVIeavpe~~  396 (721)
                      ++|+||.|++...
T Consensus       227 ~aDvVi~at~~~~  239 (404)
T 1gpj_A          227 RSDVVVSATAAPH  239 (404)
T ss_dssp             TCSEEEECCSSSS
T ss_pred             CCCEEEEccCCCC
Confidence            8999999998544

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=96.31  E-value=0.0082  Score=65.10  Aligned_cols=153  Identities=16%  Similarity=0.126  Sum_probs=83.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHC-CCc-eEEEeCCHHHHHHHHHHHHHHHHhhhhcCCC----CHHHHHHh--hcCceecc
Q 004972          306 RKVAVIGGGLMGSGIATAHILN-NIY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKL----TQDKANNA--LKMLKGVL  377 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~-G~~-V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~----~~~~~~~~--~~~i~~~~  377 (721)
                      -||||||+|.||..++..+.+. +.+ |.++|+++++++...+..   +.   ....+    +..+....  .+....++
T Consensus        24 IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~---yG---~~~~~~~~~~~~~i~~a~~~g~~~v~~   97 (446)
T 3upl_A           24 IRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTA---YG---DEENAREATTESAMTRAIEAGKIAVTD   97 (446)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHH---HS---SSTTEEECSSHHHHHHHHHTTCEEEES
T ss_pred             eEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHh---cC---CccccccccchhhhhhhhccCCceEEC
Confidence            4899999999999999887654 555 458999999877653221   00   00000    11111111  12355677


Q ss_pred             Cccc-cC--CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH---HHhcccCCCCcEEEecCCCCCCCCC
Q 004972          378 DYSE-FK--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHVMP  451 (721)
Q Consensus       378 ~~~~-l~--~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~---~l~~~~~~~~r~ig~h~~~p~~~~~  451 (721)
                      |++. ++  +.|+|++|+|...........-+    ..+.=|++........   ++.+.......+             
T Consensus        98 D~eeLL~d~dIDaVviaTp~p~~H~e~a~~AL----~AGKHVv~~nk~l~~~eg~eL~~~A~e~Gvv-------------  160 (446)
T 3upl_A           98 DNDLILSNPLIDVIIDATGIPEVGAETGIAAI----RNGKHLVMMNVEADVTIGPYLKAQADKQGVI-------------  160 (446)
T ss_dssp             CHHHHHTCTTCCEEEECSCCHHHHHHHHHHHH----HTTCEEEECCHHHHHHHHHHHHHHHHHHTCC-------------
T ss_pred             CHHHHhcCCCCCEEEEcCCChHHHHHHHHHHH----HcCCcEEecCcccCHHHHHHHHHHHHHhCCe-------------
Confidence            7743 43  68999999984222222222223    3333333322222222   222222111111             


Q ss_pred             eeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004972          452 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG  484 (721)
Q Consensus       452 lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~  484 (721)
                         +.......+..+..+..+.+.+|..++.++
T Consensus       161 ---l~~~~gdqp~~~~eLv~~a~~~G~~~v~~G  190 (446)
T 3upl_A          161 ---YSLGAGDEPSSCMELIEFVSALGYEVVSAG  190 (446)
T ss_dssp             ---EEECTTSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             ---eeecCCcchHHHHHHHHHHHhCCCeEEEec
Confidence               122222347778889999999999999986

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=96.21  E-value=0.068  Score=59.26  Aligned_cols=158  Identities=12%  Similarity=0.118  Sum_probs=94.6

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEE
Q 004972           26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (721)
Q Consensus        26 Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav  105 (721)
                      -+++.+..+.+.+.++.+.+. .+-+|.|.-.++ |..|.+-..          .-........+ ..+.+...|.|+.|
T Consensus       339 G~l~~~~~~K~ar~i~~a~~~-~~Plv~l~ds~G-~~~G~~~E~----------~G~~~~~Ak~l-~~~~~~~vP~Isvi  405 (522)
T 1x0u_A          339 GSIDIDAADKAARFIRFCDAF-NIPLISLVDTPG-YVPGTDQEY----------KGIIRHGAKML-YAFAEATVPKITVI  405 (522)
T ss_dssp             GCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEECC-BCCSHHHHH----------TTHHHHHHHHH-HHHHHCCSCEEEEE
T ss_pred             CCcCHHHHHHHHHHHHHHhhC-CCCEEEEecCCC-CCCchHHHH----------HHHHHHHHHHH-HHHHhCCCCEEEEE
Confidence            689999999999999988754 455666654322 333322111          01112333455 56788999999999


Q ss_pred             CCcccccchHhhh----hcCEEEeeCCceEeCcccc--cCcccccccccc-----ccCHHHHHHHHHcCCCcCHHHHHHc
Q 004972          106 EGLALGGGLELAM----GCHARIAAPKTQLGLPELT--LGVIPGTQRLPR-----LVGLSKAIEMMLLSKSITSEEGWKL  174 (721)
Q Consensus       106 ~G~a~GgG~~lal----acD~ria~~~a~~~~pe~~--~Gl~P~~~~l~r-----~~G~~~a~~l~ltg~~~~a~eA~~~  174 (721)
                      -|.|.|||.....    .+|+++|.+++.+++-...  ..++--. .+.+     .+-.....+.  .-..-++..+.+.
T Consensus       406 ~g~~~GGg~~~~a~~a~~~D~v~a~p~A~i~v~gpegaa~Il~r~-~i~~~~d~~~~~~~l~~~y--~~~~~~~~~~~~~  482 (522)
T 1x0u_A          406 VRKSYGGAHIAMSIKSLGADLVYAWPTAEIAVTGPEGAVRILYRK-EIQQASNPDDVLKQRIAEY--RKLFANPYWAAEK  482 (522)
T ss_dssp             EEEEEHHHHHHTCCGGGTCSEEEECTTCEEESSCHHHHHHHHTSS-SSSSSSSSSSSSHHHHHHH--HHHHSSSHHHHHT
T ss_pred             eCCcccHHHHHhcccccCCCEEEEeCCCEEEecCHHHHHHHHhhh-hhhcccCHHHHHHHHHHHH--HHhcCCHHHHHhc
Confidence            9999999764443    4999999999888763211  1110000 0000     0111111100  0012356779999


Q ss_pred             CCccEEcCCchHHHHHHHHHHHHHh
Q 004972          175 GLIDAVVTSEELLKVSRLWALDIAA  199 (721)
Q Consensus       175 Glv~~vv~~~~l~~~a~~~a~~~a~  199 (721)
                      |+||.|+++.++.+......+.+..
T Consensus       483 G~iD~II~p~~tR~~L~~~L~~~~~  507 (522)
T 1x0u_A          483 GLVDDVIEPKDTRRVIVAGLEMLKT  507 (522)
T ss_dssp             TSSSEECCGGGHHHHHHHHHHHHTT
T ss_pred             CCCcEeECHHHHHHHHHHHHHHHhh
Confidence            9999999998877766665555543

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=96.20  E-value=0.014  Score=61.32  Aligned_cols=71  Identities=15%  Similarity=0.042  Sum_probs=49.9

Q ss_pred             ceeEEEEcCCCCcH-HHHHHHHHCCCce-EEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccc-
Q 004972          305 VRKVAVIGGGLMGS-GIATAHILNNIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE-  381 (721)
Q Consensus       305 ~~kI~VIG~G~mG~-~iA~~la~~G~~V-~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-  381 (721)
                      ..||||||+|.||. .++..+...|++| .++|+++++++...+.                      .+.....++++. 
T Consensus         4 ~~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~----------------------~~~~~~~~~~~~l   61 (336)
T 2p2s_A            4 KIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSL----------------------FPSVPFAASAEQL   61 (336)
T ss_dssp             CCEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHH----------------------STTCCBCSCHHHH
T ss_pred             ccEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHh----------------------cCCCcccCCHHHH
Confidence            45899999999996 6777777778886 5999999876654221                      112334556633 


Q ss_pred             cC--CCCEEEEcccCChH
Q 004972          382 FK--DVDMVIEAVIESVP  397 (721)
Q Consensus       382 l~--~aDlVIeavpe~~~  397 (721)
                      ++  ++|+|++|+|....
T Consensus        62 l~~~~~D~V~i~tp~~~h   79 (336)
T 2p2s_A           62 ITDASIDLIACAVIPCDR   79 (336)
T ss_dssp             HTCTTCCEEEECSCGGGH
T ss_pred             hhCCCCCEEEEeCChhhH
Confidence            43  69999999995544

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=96.20  E-value=0.0093  Score=60.74  Aligned_cols=40  Identities=18%  Similarity=0.165  Sum_probs=36.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI  345 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~  345 (721)
                      +++.|+|+|-+|.+++..|++.|. +|++++|++++++...
T Consensus       121 k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la  161 (272)
T 3pwz_A          121 RRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALR  161 (272)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHH
T ss_pred             CEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence            689999999999999999999996 9999999998877653

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=96.15  E-value=0.0094  Score=65.60  Aligned_cols=40  Identities=18%  Similarity=0.297  Sum_probs=37.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  345 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  345 (721)
                      |||.|+|+|.+|..+|..|...|++|+++|.+++.++.+.
T Consensus         4 M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~   43 (461)
T 4g65_A            4 MKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQ   43 (461)
T ss_dssp             EEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH
Confidence            5899999999999999999999999999999999987653

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=96.10  E-value=0.0067  Score=62.03  Aligned_cols=39  Identities=15%  Similarity=0.016  Sum_probs=35.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKG  344 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~  344 (721)
                      +++.|+|+|-+|.+++..|+..|. +|++++|++++++..
T Consensus       123 k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~L  162 (282)
T 3fbt_A          123 NICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEI  162 (282)
T ss_dssp             SEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence            589999999999999999999998 899999999886653

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=96.07  E-value=0.0028  Score=68.50  Aligned_cols=39  Identities=26%  Similarity=0.160  Sum_probs=35.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  344 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  344 (721)
                      .+|+|||+|.+|..+++.+...|.+|+++|++++.++.+
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~  211 (401)
T 1x13_A          173 AKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQV  211 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            589999999999999999999999999999999876654

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=96.06  E-value=0.0089  Score=63.25  Aligned_cols=73  Identities=14%  Similarity=0.136  Sum_probs=50.4

Q ss_pred             CCceeEEEEcCCCCcHH-HHHHHHHC-CCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc
Q 004972          303 RGVRKVAVIGGGLMGSG-IATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  379 (721)
Q Consensus       303 ~~~~kI~VIG~G~mG~~-iA~~la~~-G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  379 (721)
                      +.|.||||||+|.||.. .+..+... +.+|+ ++|+++++++...++                      .+.-...+|+
T Consensus        21 ~~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~----------------------~g~~~~y~d~   78 (350)
T 4had_A           21 QSMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADR----------------------FSVPHAFGSY   78 (350)
T ss_dssp             -CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHH----------------------HTCSEEESSH
T ss_pred             cCccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHH----------------------cCCCeeeCCH
Confidence            45679999999999975 45666654 66766 899999987664321                      1222345666


Q ss_pred             cc-c--CCCCEEEEcccCChH
Q 004972          380 SE-F--KDVDMVIEAVIESVP  397 (721)
Q Consensus       380 ~~-l--~~aDlVIeavpe~~~  397 (721)
                      +. +  .+.|+|++|+|....
T Consensus        79 ~ell~~~~iDaV~I~tP~~~H   99 (350)
T 4had_A           79 EEMLASDVIDAVYIPLPTSQH   99 (350)
T ss_dssp             HHHHHCSSCSEEEECSCGGGH
T ss_pred             HHHhcCCCCCEEEEeCCCchh
Confidence            43 3  568999999995544

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=96.03  E-value=0.019  Score=62.61  Aligned_cols=77  Identities=16%  Similarity=0.095  Sum_probs=50.9

Q ss_pred             CCceeEEEEcCCCCcH-HHHHHHHHC-CCce-EEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc
Q 004972          303 RGVRKVAVIGGGLMGS-GIATAHILN-NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  379 (721)
Q Consensus       303 ~~~~kI~VIG~G~mG~-~iA~~la~~-G~~V-~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  379 (721)
                      ++..||+|||+|.||. .++..+.+. +++| .++|+++++++...+.          -| +..       ..+...+++
T Consensus        81 ~~~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~----------~g-~~~-------~~~~~~~~~  142 (433)
T 1h6d_A           81 DRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAE----------YG-VDP-------RKIYDYSNF  142 (433)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHH----------TT-CCG-------GGEECSSSG
T ss_pred             CCceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHH----------hC-CCc-------ccccccCCH
Confidence            4456899999999997 898888765 5665 5899999876653211          01 000       012335566


Q ss_pred             cc-cC--CCCEEEEcccCChH
Q 004972          380 SE-FK--DVDMVIEAVIESVP  397 (721)
Q Consensus       380 ~~-l~--~aDlVIeavpe~~~  397 (721)
                      +. ++  ++|+|++|+|....
T Consensus       143 ~~ll~~~~vD~V~iatp~~~h  163 (433)
T 1h6d_A          143 DKIAKDPKIDAVYIILPNSLH  163 (433)
T ss_dssp             GGGGGCTTCCEEEECSCGGGH
T ss_pred             HHHhcCCCCCEEEEcCCchhH
Confidence            43 44  79999999995443

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=96.02  E-value=0.017  Score=58.90  Aligned_cols=39  Identities=10%  Similarity=0.100  Sum_probs=35.5

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHH
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLK  343 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~  343 (721)
                      ++||.|.|+|.+|+.++..|.+.|++|++.+++++..+.
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~   43 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEA   43 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHH
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhh
Confidence            468999999999999999999999999999999876544

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=96.00  E-value=0.0044  Score=66.05  Aligned_cols=97  Identities=19%  Similarity=0.231  Sum_probs=60.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCcee-ccCc-cccC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDY-SEFK  383 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~-~~l~  383 (721)
                      ++|.|+|+|.+|..+++.+...|.+|+++|+++++++.+.+...    ..+              ..+.. ..++ +.+.
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~----~~~--------------~~~~~~~~~~~~~~~  229 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFG----SRV--------------ELLYSNSAEIETAVA  229 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG----GGS--------------EEEECCHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhC----cee--------------EeeeCCHHHHHHHHc
Confidence            68999999999999999999999999999999998776532110    000              00000 0111 3456


Q ss_pred             CCCEEEEcccCChHHHHH-HHHHHHhhCCCCeEEEecC
Q 004972          384 DVDMVIEAVIESVPLKQK-IFSELEKACPPHCILATNT  420 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~-v~~~l~~~~~~~~ii~s~t  420 (721)
                      ++|+||.|++-....... +.++..+.++++.++++..
T Consensus       230 ~~DvVI~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~  267 (361)
T 1pjc_A          230 EADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVA  267 (361)
T ss_dssp             TCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred             CCCEEEECCCcCCCCCCeecCHHHHhhCCCCCEEEEEe
Confidence            899999999632210000 1122334566777666544

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=95.97  E-value=0.0073  Score=61.59  Aligned_cols=102  Identities=17%  Similarity=0.114  Sum_probs=56.7

Q ss_pred             CCceeEEEEcC-CCCcHHHHHHHHH-CCCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc
Q 004972          303 RGVRKVAVIGG-GLMGSGIATAHIL-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  379 (721)
Q Consensus       303 ~~~~kI~VIG~-G~mG~~iA~~la~-~G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  379 (721)
                      ++..||+|+|+ |.||..++..+.. .|++|+ ++|++++....            .+.+.+.    ......+..++++
T Consensus         3 ~~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g------------~d~~~~~----g~~~~~v~~~~dl   66 (273)
T 1dih_A            3 DANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLG------------SDAGELA----GAGKTGVTVQSSL   66 (273)
T ss_dssp             CCBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCS------------CCTTCSS----SSSCCSCCEESCS
T ss_pred             CCCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhh------------hhHHHHc----CCCcCCceecCCH
Confidence            34468999998 9999999998774 578877 78887643100            0000000    0000123335566


Q ss_pred             -cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH
Q 004972          380 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL  425 (721)
Q Consensus       380 -~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i  425 (721)
                       +.+.++|+||++.+  ++...+.+...   +..+.-+++.|+++..
T Consensus        67 ~~~l~~~DvVIDft~--p~~~~~~~~~a---~~~G~~vVigTtG~~~  108 (273)
T 1dih_A           67 DAVKDDFDVFIDFTR--PEGTLNHLAFC---RQHGKGMVIGTTGFDE  108 (273)
T ss_dssp             TTTTTSCSEEEECSC--HHHHHHHHHHH---HHTTCEEEECCCCCCH
T ss_pred             HHHhcCCCEEEEcCC--hHHHHHHHHHH---HhCCCCEEEECCCCCH
Confidence             44678999998775  44333333332   3334434444445443

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=95.96  E-value=0.021  Score=59.89  Aligned_cols=97  Identities=11%  Similarity=0.045  Sum_probs=59.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCC---Cc-eEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccc
Q 004972          306 RKVAVIGGGLMGSGIATAHILNN---IY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  381 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G---~~-V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  381 (721)
                      .||+|||+|.||...+..+...+   ++ |.++|+++++++...+.                      .+.-...++++.
T Consensus         3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~----------------------~~~~~~~~~~~~   60 (334)
T 3ohs_X            3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQK----------------------HDIPKAYGSYEE   60 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHH----------------------HTCSCEESSHHH
T ss_pred             cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHH----------------------cCCCcccCCHHH
Confidence            58999999999999999887654   34 55889999887664321                      111123556633


Q ss_pred             -c--CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHH
Q 004972          382 -F--KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV  428 (721)
Q Consensus       382 -l--~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l  428 (721)
                       +  .++|+|++|+|.....  ++..+....  ..-+++.-.-+....+.
T Consensus        61 ll~~~~vD~V~i~tp~~~H~--~~~~~al~~--GkhVl~EKP~a~~~~e~  106 (334)
T 3ohs_X           61 LAKDPNVEVAYVGTQHPQHK--AAVMLCLAA--GKAVLCEKPMGVNAAEV  106 (334)
T ss_dssp             HHHCTTCCEEEECCCGGGHH--HHHHHHHHT--TCEEEEESSSSSSHHHH
T ss_pred             HhcCCCCCEEEECCCcHHHH--HHHHHHHhc--CCEEEEECCCCCCHHHH
Confidence             3  3699999999955443  333332221  22355544444555443

>2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A*

Probab=95.96  E-value=0.091  Score=52.30  Aligned_cols=109  Identities=18%  Similarity=0.174  Sum_probs=78.5

Q ss_pred             ceeccC-ccccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcc---cCCC-CcEEEecCCCCC
Q 004972          373 LKGVLD-YSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEK---TSSQ-DRIIGAHFFSPA  447 (721)
Q Consensus       373 i~~~~~-~~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~---~~~~-~r~ig~h~~~p~  447 (721)
                      +..++| .++++++|++|.-.|.. .....+.+++.+++++++|| +||.++++..+...   +.+. -.+..+||-.=|
T Consensus       129 VkVtsDD~EAvk~AEi~IlftPfG-~~t~~Iakkii~~lpEgAII-~nTCTipp~~ly~~le~l~R~DvgIsS~HPaaVP  206 (358)
T 2b0j_A          129 LKVTSDDREAVEGADIVITWLPKG-NKQPDIIKKFADAIPEGAIV-THACTIPTTKFAKIFKDLGREDLNITSYHPGCVP  206 (358)
T ss_dssp             CEEESCHHHHHTTCSEEEECCTTC-TTHHHHHHHHGGGSCTTCEE-EECSSSCHHHHHHHHHHTTCTTSEEEECBCSSCT
T ss_pred             cEeecchHHHhcCCCEEEEecCCC-CCcHHHHHHHHhhCcCCCEE-ecccCCCHHHHHHHHHHhCcccCCeeccCCCCCC
Confidence            455544 48899999999999853 23457889999999999987 57777777644433   3333 457778886533


Q ss_pred             CCCCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004972          448 HVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG  484 (721)
Q Consensus       448 ~~~~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v~  484 (721)
                      .. ..-........++|+++++.++.+..|+.+.++.
T Consensus       207 gt-~Gq~~~g~~yAtEEqIeklveLaksa~k~ay~vP  242 (358)
T 2b0j_A          207 EM-KGQVYIAEGYASEEAVNKLYEIGKIARGKAFKMP  242 (358)
T ss_dssp             TT-CCCEEEEESSSCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred             CC-CCccccccccCCHHHHHHHHHHHHHhCCCeEecc
Confidence            32 2223444455689999999999999999999883

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=95.92  E-value=0.0035  Score=63.78  Aligned_cols=102  Identities=15%  Similarity=0.082  Sum_probs=59.3

Q ss_pred             CCceeEEEEc-CCCCcHHHHHHHHHC-CCceEE-EeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc
Q 004972          303 RGVRKVAVIG-GGLMGSGIATAHILN-NIYVVL-KEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  379 (721)
Q Consensus       303 ~~~~kI~VIG-~G~mG~~iA~~la~~-G~~V~l-~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  379 (721)
                      |+|.||+|+| .|.||..++..+.+. +++++. +|++.+....            ...+.+.     .....+..++++
T Consensus         5 M~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G------------~d~gel~-----g~~~gv~v~~dl   67 (272)
T 4f3y_A            5 MSSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLG------------QDAGAFL-----GKQTGVALTDDI   67 (272)
T ss_dssp             -CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTT------------SBTTTTT-----TCCCSCBCBCCH
T ss_pred             ccccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCccccc------------ccHHHHh-----CCCCCceecCCH
Confidence            4468999999 799999999988765 677664 7877432100            0001000     000124445666


Q ss_pred             -cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH
Q 004972          380 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN  426 (721)
Q Consensus       380 -~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~  426 (721)
                       +.+.++|+||++.+  ++...+.+....   ..+.-+++.|++++..
T Consensus        68 ~~ll~~~DVVIDfT~--p~a~~~~~~~al---~~G~~vVigTTG~s~~  110 (272)
T 4f3y_A           68 ERVCAEADYLIDFTL--PEGTLVHLDAAL---RHDVKLVIGTTGFSEP  110 (272)
T ss_dssp             HHHHHHCSEEEECSC--HHHHHHHHHHHH---HHTCEEEECCCCCCHH
T ss_pred             HHHhcCCCEEEEcCC--HHHHHHHHHHHH---HcCCCEEEECCCCCHH
Confidence             34678999999986  554444444433   3344455556665543

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=95.91  E-value=0.047  Score=58.02  Aligned_cols=98  Identities=8%  Similarity=0.120  Sum_probs=60.2

Q ss_pred             ceeEEEEcCCCCcH-HHHHHHHHCCCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccc-
Q 004972          305 VRKVAVIGGGLMGS-GIATAHILNNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE-  381 (721)
Q Consensus       305 ~~kI~VIG~G~mG~-~iA~~la~~G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-  381 (721)
                      ..||||||+|.+|. .++..+...+.+|+ ++|+++++++...+.                      .+.....++++. 
T Consensus        26 ~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~----------------------~~~~~~~~~~~~l   83 (361)
T 3u3x_A           26 ELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAV----------------------YADARRIATAEEI   83 (361)
T ss_dssp             CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHH----------------------SSSCCEESCHHHH
T ss_pred             CcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHH----------------------cCCCcccCCHHHH
Confidence            35899999999995 56777777888854 899999987664321                      122344566633 


Q ss_pred             c--CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHH
Q 004972          382 F--KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV  428 (721)
Q Consensus       382 l--~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l  428 (721)
                      +  .+.|+|++|+|...  -.++.....+.  ..-+++--.-+....+.
T Consensus        84 l~~~~vD~V~I~tp~~~--H~~~~~~al~a--GkhVl~EKPla~~~~ea  128 (361)
T 3u3x_A           84 LEDENIGLIVSAAVSSE--RAELAIRAMQH--GKDVLVDKPGMTSFDQL  128 (361)
T ss_dssp             HTCTTCCEEEECCCHHH--HHHHHHHHHHT--TCEEEEESCSCSSHHHH
T ss_pred             hcCCCCCEEEEeCChHH--HHHHHHHHHHC--CCeEEEeCCCCCCHHHH
Confidence            3  35899999999433  33443333221  22355544444555443

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=95.88  E-value=0.029  Score=55.16  Aligned_cols=130  Identities=13%  Similarity=0.139  Sum_probs=76.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  385 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  385 (721)
                      ++|.|||+|.+|..-+..|.+.|.+|++++.+....          +..+.+.+.+.         .+...-..+.+.++
T Consensus        32 k~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~----------l~~l~~~~~i~---------~i~~~~~~~dL~~a   92 (223)
T 3dfz_A           32 RSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAE----------INEWEAKGQLR---------VKRKKVGEEDLLNV   92 (223)
T ss_dssp             CCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHH----------HHHHHHTTSCE---------EECSCCCGGGSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHH----------HHHHHHcCCcE---------EEECCCCHhHhCCC
Confidence            689999999999999999999999999999864321          11122223211         01111122568899


Q ss_pred             CEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCC--CCCCeeEEecCCCCCH
Q 004972          386 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA--HVMPLLEIVRTERTSA  463 (721)
Q Consensus       386 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~--~~~~lvEiv~~~~t~~  463 (721)
                      |+||-|. ++.++...+.    ..++.+ |++ |...-+-     .         ..|+.|.  ..++++--|.+.+.+|
T Consensus        93 dLVIaAT-~d~~~N~~I~----~~ak~g-i~V-NvvD~p~-----~---------~~f~~Paiv~rg~l~iaIST~G~sP  151 (223)
T 3dfz_A           93 FFIVVAT-NDQAVNKFVK----QHIKND-QLV-NMASSFS-----D---------GNIQIPAQFSRGRLSLAISTDGASP  151 (223)
T ss_dssp             SEEEECC-CCTHHHHHHH----HHSCTT-CEE-EC----------C---------CSEECCEEEEETTEEEEEECTTSCH
T ss_pred             CEEEECC-CCHHHHHHHH----HHHhCC-CEE-EEeCCcc-----c---------CeEEEeeEEEeCCEEEEEECCCCCc
Confidence            9999775 4555544443    334433 333 2222110     0         1222332  2345655667777899


Q ss_pred             HHHHHHHHHHHH
Q 004972          464 QVILDLMTVGKI  475 (721)
Q Consensus       464 e~~~~~~~l~~~  475 (721)
                      .....++.-++.
T Consensus       152 ~la~~iR~~ie~  163 (223)
T 3dfz_A          152 LLTKRIKEDLSS  163 (223)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            888888887765

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=95.87  E-value=0.021  Score=60.64  Aligned_cols=70  Identities=16%  Similarity=0.146  Sum_probs=48.1

Q ss_pred             CCceeEEEEcCCCCcHH-HHHHHHHC-CCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc
Q 004972          303 RGVRKVAVIGGGLMGSG-IATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  379 (721)
Q Consensus       303 ~~~~kI~VIG~G~mG~~-iA~~la~~-G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  379 (721)
                      |++.||||||+|.||.. .+..+.+. +++|+ ++|++++++..                         ........+++
T Consensus         3 m~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~-------------------------~~~~~~~~~~~   57 (358)
T 3gdo_A            3 LDTIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVKR-------------------------DFPDAEVVHEL   57 (358)
T ss_dssp             TTCEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHHHH-------------------------HCTTSEEESST
T ss_pred             CCcceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHh-------------------------hCCCCceECCH
Confidence            34568999999999997 56666554 67764 88999865221                         01124456676


Q ss_pred             c-ccC--CCCEEEEcccCChH
Q 004972          380 S-EFK--DVDMVIEAVIESVP  397 (721)
Q Consensus       380 ~-~l~--~aDlVIeavpe~~~  397 (721)
                      + .++  +.|+|++|+|....
T Consensus        58 ~~ll~~~~vD~V~i~tp~~~H   78 (358)
T 3gdo_A           58 EEITNDPAIELVIVTTPSGLH   78 (358)
T ss_dssp             HHHHTCTTCCEEEECSCTTTH
T ss_pred             HHHhcCCCCCEEEEcCCcHHH
Confidence            3 344  78999999996554

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=95.86  E-value=0.009  Score=65.56  Aligned_cols=40  Identities=18%  Similarity=0.160  Sum_probs=36.0

Q ss_pred             CceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHH
Q 004972          304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLK  343 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~  343 (721)
                      .+++|.|+|+|.+|..++..|++.|++|+++|+++++++.
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~   41 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKK   41 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHH
Confidence            3578999999999999999999999999999999887654

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=95.86  E-value=0.013  Score=60.18  Aligned_cols=74  Identities=16%  Similarity=0.168  Sum_probs=50.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  385 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  385 (721)
                      ++|.|+|+|-||.++|..|++.| +|++++++.++++...+.+....    ...   . ..     .+..++-.+.+.++
T Consensus       129 k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~----~~~---~-~~-----~~d~~~~~~~~~~~  194 (287)
T 1nvt_A          129 KNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKL----NKK---F-GE-----EVKFSGLDVDLDGV  194 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHH----TCC---H-HH-----HEEEECTTCCCTTC
T ss_pred             CEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhc----ccc---c-ce-----eEEEeeHHHhhCCC
Confidence            57999999999999999999999 99999999988766544332110    000   0 00     01122113556789


Q ss_pred             CEEEEccc
Q 004972          386 DMVIEAVI  393 (721)
Q Consensus       386 DlVIeavp  393 (721)
                      |+||.+++
T Consensus       195 DilVn~ag  202 (287)
T 1nvt_A          195 DIIINATP  202 (287)
T ss_dssp             CEEEECSC
T ss_pred             CEEEECCC
Confidence            99999887

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=95.84  E-value=0.0069  Score=63.36  Aligned_cols=92  Identities=13%  Similarity=0.125  Sum_probs=57.1

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHC-CCce-EEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccc-
Q 004972          305 VRKVAVIGGGLMGSGIATAHILN-NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE-  381 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~-G~~V-~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-  381 (721)
                      ..||+|||+|.||..++..+.+. +.++ .++|++++.  ..            .            . .+..+++++. 
T Consensus         3 ~irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~--~~------------~------------~-gv~~~~d~~~l   55 (320)
T 1f06_A            3 NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL--DT------------K------------T-PVFDVADVDKH   55 (320)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC--SS------------S------------S-CEEEGGGGGGT
T ss_pred             CCEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH--hh------------c------------C-CCceeCCHHHH
Confidence            35899999999999999998876 5664 588988653  10            0            0 1344556543 


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCe-EEEecCCCCCHHHH
Q 004972          382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHC-ILATNTSTIDLNIV  428 (721)
Q Consensus       382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~-ii~s~ts~~~i~~l  428 (721)
                      +.++|+||+|+|.... ...    +...+..+. +|++.+.+..+.++
T Consensus        56 l~~~DvViiatp~~~h-~~~----~~~al~aG~~Vv~ekp~~~~~~~~   98 (320)
T 1f06_A           56 ADDVDVLFLCMGSATD-IPE----QAPKFAQFACTVDTYDNHRDIPRH   98 (320)
T ss_dssp             TTTCSEEEECSCTTTH-HHH----HHHHHTTTSEEECCCCCGGGHHHH
T ss_pred             hcCCCEEEEcCCcHHH-HHH----HHHHHHCCCEEEECCCCcCCHHHH
Confidence            4789999999985543 222    223334444 44443334555444

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=95.80  E-value=0.027  Score=59.88  Aligned_cols=69  Identities=19%  Similarity=0.232  Sum_probs=47.4

Q ss_pred             CceeEEEEcCCCCcHH-HHHHHHHC-CCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcc
Q 004972          304 GVRKVAVIGGGLMGSG-IATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS  380 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~-iA~~la~~-G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  380 (721)
                      ++.||+|||+|.||.. .+..+.+. +++|+ ++|+++++++..                         .......++++
T Consensus         6 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~-------------------------~~~~~~~~~~~   60 (364)
T 3e82_A            6 NTINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKRD-------------------------LPDVTVIASPE   60 (364)
T ss_dssp             -CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHHH-------------------------CTTSEEESCHH
T ss_pred             CcceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhh-------------------------CCCCcEECCHH
Confidence            4568999999999997 66666654 67775 889998764310                         11244556663


Q ss_pred             -ccC--CCCEEEEcccCChH
Q 004972          381 -EFK--DVDMVIEAVIESVP  397 (721)
Q Consensus       381 -~l~--~aDlVIeavpe~~~  397 (721)
                       .++  +.|+|++|+|....
T Consensus        61 ~ll~~~~~D~V~i~tp~~~H   80 (364)
T 3e82_A           61 AAVQHPDVDLVVIASPNATH   80 (364)
T ss_dssp             HHHTCTTCSEEEECSCGGGH
T ss_pred             HHhcCCCCCEEEEeCChHHH
Confidence             344  78999999995544

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=95.78  E-value=0.013  Score=58.05  Aligned_cols=38  Identities=16%  Similarity=-0.042  Sum_probs=34.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  344 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  344 (721)
                      ++|.|+|+|.+|..++..|...|+ |+++|++++.++.+
T Consensus        10 ~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~   47 (234)
T 2aef_A           10 RHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVL   47 (234)
T ss_dssp             CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHH
T ss_pred             CEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHH
Confidence            589999999999999999999999 99999999886653

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=95.75  E-value=0.0056  Score=65.79  Aligned_cols=39  Identities=18%  Similarity=0.139  Sum_probs=35.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  344 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  344 (721)
                      .+|+|+|+|.+|..+++.+...|.+|+++|+++++.+.+
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~  211 (384)
T 1l7d_A          173 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQV  211 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            589999999999999999999999999999998876654

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=95.74  E-value=0.023  Score=61.49  Aligned_cols=69  Identities=22%  Similarity=0.231  Sum_probs=48.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHC---------CCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceec
Q 004972          307 KVAVIGGGLMGSGIATAHILN---------NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV  376 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~~---------G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~  376 (721)
                      ||||||+|.||..-+..+.+.         +.+|+ ++|++++++++..++                      .+.....
T Consensus        28 rvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~----------------------~~~~~~y   85 (412)
T 4gqa_A           28 NIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAK----------------------LGAEKAY   85 (412)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHH----------------------HTCSEEE
T ss_pred             eEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHH----------------------cCCCeEE
Confidence            799999999999888887764         33544 889999987765321                      1223445


Q ss_pred             cCccc-c--CCCCEEEEcccCChH
Q 004972          377 LDYSE-F--KDVDMVIEAVIESVP  397 (721)
Q Consensus       377 ~~~~~-l--~~aDlVIeavpe~~~  397 (721)
                      +|++. +  .+.|+|++|+|....
T Consensus        86 ~d~~~ll~~~~vD~V~I~tp~~~H  109 (412)
T 4gqa_A           86 GDWRELVNDPQVDVVDITSPNHLH  109 (412)
T ss_dssp             SSHHHHHHCTTCCEEEECSCGGGH
T ss_pred             CCHHHHhcCCCCCEEEECCCcHHH
Confidence            66633 3  468999999995544

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=95.70  E-value=0.017  Score=60.50  Aligned_cols=33  Identities=24%  Similarity=0.354  Sum_probs=30.2

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCC-------ceEEEeCCH
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNS  338 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~  338 (721)
                      +||.|+|+ |.+|+.++..|+..|+       +|+++|+++
T Consensus         5 mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~   45 (327)
T 1y7t_A            5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQ   45 (327)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGG
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCC
Confidence            48999997 9999999999999996       899999975

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=95.65  E-value=0.13  Score=57.12  Aligned_cols=146  Identities=12%  Similarity=0.116  Sum_probs=89.0

Q ss_pred             EEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHH
Q 004972           15 VAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL   93 (721)
Q Consensus        15 v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (721)
                      |+++..+-. ..-++.....+.+..+++.+.+.. +-+|.|.-.|     |+-+.+-...     ...+...+....   
T Consensus       100 v~v~a~D~t~~gGS~g~~~~~Ki~r~~e~A~~~~-lPvI~l~dSg-----GAR~qeg~~~-----l~g~~~~~~~~~---  165 (527)
T 1vrg_A          100 VAVFSQDFTVMGGSLGEMHAKKIVKLLDLALKMG-IPVIGINDSG-----GARIQEGVDA-----LAGYGEIFLRNT---  165 (527)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEEEC-----SBCGGGTHHH-----HHHHHHHHHHHH---
T ss_pred             EEEEEEeccccCccccHHHHHHHHHHHHHHHHcC-CCEEEEECCC-----CCCccchhHH-----HHHHHHHHHHHH---
Confidence            444444432 247889999999999999887653 4456665433     3333321110     000111111111   


Q ss_pred             HhhCCCcEEEEECCcccccchHhhhhcCEEEeeCC-ceEeCcccccCccccccccccccCHHHHHHHHHcCCCcCHH---
Q 004972           94 IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSE---  169 (721)
Q Consensus        94 l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~-a~~~~pe~~~Gl~P~~~~l~r~~G~~~a~~l~ltg~~~~a~---  169 (721)
                      ......|+|++|.|.|.|||......||++|+.++ +.+++.                 |+.... . .+|+.++.+   
T Consensus       166 ~~s~~iP~Isvv~Gp~~GG~a~s~al~D~vi~~~~~a~i~~a-----------------GP~vi~-~-~~ge~v~~e~lg  226 (527)
T 1vrg_A          166 LASGVVPQITVIAGPCAGGAVYSPALTDFIVMVDQTARMFIT-----------------GPNVIK-A-VTGEEISQEDLG  226 (527)
T ss_dssp             HHTTTSCEEEEEEEEEBGGGGHHHHHSSEEEEETTTCBCBSS-----------------CHHHHH-H-HHCCCCCHHHHH
T ss_pred             HhCCCCCEEEEEeCCCchHHHHHHHcCCeEEEecCceEEEec-----------------CHHHHH-H-HhCCCCCccccc
Confidence            22456999999999999999988889999999987 765543                 333222 1 457777764   


Q ss_pred             --HHH--HcCCccEEcCCc-hHHHHHHHH
Q 004972          170 --EGW--KLGLIDAVVTSE-ELLKVSRLW  193 (721)
Q Consensus       170 --eA~--~~Glv~~vv~~~-~l~~~a~~~  193 (721)
                        +..  +.|++|.+++++ ++.+.+.++
T Consensus       227 gae~~~~~~G~vd~vv~d~~~~~~~~~~~  255 (527)
T 1vrg_A          227 GAMVHNQKSGNAHFLADNDEKAMSLVRTL  255 (527)
T ss_dssp             BHHHHHHTSCCCSEEESSHHHHHHHHHHH
T ss_pred             cHHHHhhcccceEEEecCHHHHHHHHHHH
Confidence              222  689999999854 444444444

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=95.60  E-value=0.05  Score=59.52  Aligned_cols=78  Identities=18%  Similarity=0.201  Sum_probs=51.6

Q ss_pred             CCceeEEEEcCCCCcHHHHHHHHHC-CCce-EEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceecc---
Q 004972          303 RGVRKVAVIGGGLMGSGIATAHILN-NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL---  377 (721)
Q Consensus       303 ~~~~kI~VIG~G~mG~~iA~~la~~-G~~V-~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~---  377 (721)
                      ++..||+|||+|.||...+..+... |.+| .++|+++++++...+.+.       +.|.          ......+   
T Consensus        18 ~~~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~-------~~g~----------~~~~~~~~~~   80 (444)
T 2ixa_A           18 PKKVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILK-------KNGK----------KPAKVFGNGN   80 (444)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHH-------HTTC----------CCCEEECSST
T ss_pred             CCCceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHH-------hcCC----------CCCceeccCC
Confidence            3456899999999999999888774 6675 589999998776533211       0110          0123334   


Q ss_pred             -Cc-cccC--CCCEEEEcccCChH
Q 004972          378 -DY-SEFK--DVDMVIEAVIESVP  397 (721)
Q Consensus       378 -~~-~~l~--~aDlVIeavpe~~~  397 (721)
                       ++ +.++  +.|+|++|+|....
T Consensus        81 ~~~~~ll~~~~vD~V~i~tp~~~h  104 (444)
T 2ixa_A           81 DDYKNMLKDKNIDAVFVSSPWEWH  104 (444)
T ss_dssp             TTHHHHTTCTTCCEEEECCCGGGH
T ss_pred             CCHHHHhcCCCCCEEEEcCCcHHH
Confidence             55 3344  68999999995543

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=95.59  E-value=0.025  Score=61.11  Aligned_cols=42  Identities=21%  Similarity=0.199  Sum_probs=36.7

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCC---CceEEEeCCHHHHHHHHH
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNN---IYVVLKEVNSEYLLKGIK  346 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G---~~V~l~d~~~~~~~~~~~  346 (721)
                      |+||+|+|+|.+|..++..|++.|   .+|+++|+++++++...+
T Consensus         1 M~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~   45 (405)
T 4ina_A            1 MAKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQ   45 (405)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHH
Confidence            468999999999999999999998   389999999998877544

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=95.57  E-value=0.014  Score=62.14  Aligned_cols=71  Identities=13%  Similarity=0.111  Sum_probs=47.9

Q ss_pred             CCCceeEEEEcCCCCcHH-HHHHHHHC-CCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccC
Q 004972          302 PRGVRKVAVIGGGLMGSG-IATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD  378 (721)
Q Consensus       302 ~~~~~kI~VIG~G~mG~~-iA~~la~~-G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  378 (721)
                      ++++.||+|||+|.||.. .+..+.+. +.+|+ ++|++++++.+                         ........++
T Consensus         2 ~~~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~-------------------------~~~~~~~~~~   56 (362)
T 3fhl_A            2 SLEIIKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELSKE-------------------------RYPQASIVRS   56 (362)
T ss_dssp             -CCCEEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGGGT-------------------------TCTTSEEESC
T ss_pred             CCCceEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHH-------------------------hCCCCceECC
Confidence            345578999999999997 66666665 67765 88998765211                         1123455667


Q ss_pred             cc-ccC--CCCEEEEcccCChH
Q 004972          379 YS-EFK--DVDMVIEAVIESVP  397 (721)
Q Consensus       379 ~~-~l~--~aDlVIeavpe~~~  397 (721)
                      ++ .++  +.|+|++|+|....
T Consensus        57 ~~~ll~~~~vD~V~i~tp~~~H   78 (362)
T 3fhl_A           57 FKELTEDPEIDLIVVNTPDNTH   78 (362)
T ss_dssp             SHHHHTCTTCCEEEECSCGGGH
T ss_pred             HHHHhcCCCCCEEEEeCChHHH
Confidence            63 344  48999999995444

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=95.56  E-value=0.062  Score=52.95  Aligned_cols=39  Identities=18%  Similarity=0.035  Sum_probs=35.5

Q ss_pred             ceeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHH
Q 004972          305 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLK  343 (721)
Q Consensus       305 ~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~  343 (721)
                      -++|.|.|+ |.+|..++..|++.|++|++.+|+++.++.
T Consensus        21 ~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~   60 (236)
T 3e8x_A           21 GMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPE   60 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHH
T ss_pred             CCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHH
Confidence            468999998 999999999999999999999999887654

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=95.50  E-value=0.0093  Score=61.98  Aligned_cols=41  Identities=15%  Similarity=0.251  Sum_probs=35.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCC---HHHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN---SEYLLKGIK  346 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~---~~~~~~~~~  346 (721)
                      +++.|+|+|-+|.+++..|++.|. +|++++|+   .++++...+
T Consensus       155 k~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~  199 (315)
T 3tnl_A          155 KKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVE  199 (315)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHH
T ss_pred             CEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHH
Confidence            589999999999999999999998 89999999   777665443

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=95.47  E-value=0.01  Score=61.56  Aligned_cols=40  Identities=15%  Similarity=0.199  Sum_probs=35.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCC---HHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN---SEYLLKGI  345 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~---~~~~~~~~  345 (721)
                      +++.|+|+|-+|.+++..|++.|. +|++++|+   .++++...
T Consensus       149 k~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la  192 (312)
T 3t4e_A          149 KTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFA  192 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHH
Confidence            589999999999999999999998 89999999   66655543

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=95.47  E-value=0.049  Score=59.47  Aligned_cols=72  Identities=15%  Similarity=0.110  Sum_probs=50.4

Q ss_pred             CceeEEEEcC----CCCcHHHHHHHHHC--CCce-EEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceec
Q 004972          304 GVRKVAVIGG----GLMGSGIATAHILN--NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV  376 (721)
Q Consensus       304 ~~~kI~VIG~----G~mG~~iA~~la~~--G~~V-~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~  376 (721)
                      +..||+|||+    |.||...+..+.+.  +++| .++|+++++++...+.          -| +         ..+...
T Consensus        19 ~~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~----------~g-~---------~~~~~~   78 (438)
T 3btv_A           19 APIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQR----------LK-L---------SNATAF   78 (438)
T ss_dssp             CCEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH----------TT-C---------TTCEEE
T ss_pred             CCCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHH----------cC-C---------Ccceee
Confidence            4468999999    99999999999886  6776 5899999886654221          01 0         012345


Q ss_pred             cCccc-c--CCCCEEEEcccCC
Q 004972          377 LDYSE-F--KDVDMVIEAVIES  395 (721)
Q Consensus       377 ~~~~~-l--~~aDlVIeavpe~  395 (721)
                      ++++. +  .++|+|++|+|..
T Consensus        79 ~~~~~ll~~~~vD~V~i~tp~~  100 (438)
T 3btv_A           79 PTLESFASSSTIDMIVIAIQVA  100 (438)
T ss_dssp             SSHHHHHHCSSCSEEEECSCHH
T ss_pred             CCHHHHhcCCCCCEEEEeCCcH
Confidence            56633 3  3699999999943

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=95.43  E-value=0.0061  Score=59.70  Aligned_cols=38  Identities=24%  Similarity=0.240  Sum_probs=34.3

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHH
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLK  343 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~  343 (721)
                      +||.|.|+ |.+|+.++..|++.|++|++++|+++.++.
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~   39 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAAD   39 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEeccccccc
Confidence            37999998 999999999999999999999999887543

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=95.43  E-value=0.027  Score=58.95  Aligned_cols=35  Identities=17%  Similarity=0.132  Sum_probs=32.1

Q ss_pred             CceeEEEEcCCCCcHH-HHHHHHHCCCceEEEeCCH
Q 004972          304 GVRKVAVIGGGLMGSG-IATAHILNNIYVVLKEVNS  338 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~-iA~~la~~G~~V~l~d~~~  338 (721)
                      .++||.|||.|-+|.+ +|..|.+.|++|+++|.++
T Consensus         3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~   38 (326)
T 3eag_A            3 AMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKM   38 (326)
T ss_dssp             CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            4689999999999996 9999999999999999875

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=95.41  E-value=0.04  Score=53.74  Aligned_cols=39  Identities=8%  Similarity=0.251  Sum_probs=34.1

Q ss_pred             ceeEEEEcC-CCCcHHHHHHHH-HCCCceEEEeCCHH-HHHH
Q 004972          305 VRKVAVIGG-GLMGSGIATAHI-LNNIYVVLKEVNSE-YLLK  343 (721)
Q Consensus       305 ~~kI~VIG~-G~mG~~iA~~la-~~G~~V~l~d~~~~-~~~~  343 (721)
                      |++|.|.|+ |.+|..++..|+ +.|++|++++++++ .++.
T Consensus         5 mk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~   46 (221)
T 3r6d_A            5 YXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPP   46 (221)
T ss_dssp             CSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCH
T ss_pred             EEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchh
Confidence            455999995 999999999999 89999999999988 6443

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=95.36  E-value=0.04  Score=55.32  Aligned_cols=33  Identities=24%  Similarity=0.283  Sum_probs=30.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  338 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~  338 (721)
                      .+|.|||+|-+|+.++..|+..|. +++++|.+.
T Consensus        29 ~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~   62 (251)
T 1zud_1           29 SQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD   62 (251)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred             CcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            489999999999999999999997 789998763

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=95.30  E-value=0.016  Score=59.10  Aligned_cols=75  Identities=16%  Similarity=0.162  Sum_probs=54.4

Q ss_pred             eeEEEEcCCC-CcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972          306 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  384 (721)
                      +++.|||.|. +|.++|..|...|..|+++++....++.                                   .+.+++
T Consensus       166 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~~l~l-----------------------------------~~~~~~  210 (300)
T 4a26_A          166 KRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTSTEDM-----------------------------------IDYLRT  210 (300)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSCHHHH-----------------------------------HHHHHT
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCCCchh-----------------------------------hhhhcc
Confidence            5899999866 7999999999999999999974332220                                   023578


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  422 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  422 (721)
                      ||+||-+++-..-+.       ..++++++++++..+.
T Consensus       211 ADIVI~Avg~p~~I~-------~~~vk~GavVIDvgi~  241 (300)
T 4a26_A          211 ADIVIAAMGQPGYVK-------GEWIKEGAAVVDVGTT  241 (300)
T ss_dssp             CSEEEECSCCTTCBC-------GGGSCTTCEEEECCCE
T ss_pred             CCEEEECCCCCCCCc-------HHhcCCCcEEEEEecc
Confidence            999999998432222       2346889998875543

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=95.27  E-value=0.011  Score=59.50  Aligned_cols=73  Identities=14%  Similarity=0.161  Sum_probs=54.0

Q ss_pred             eeEEEEcCC-CCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972          306 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  384 (721)
                      +++.|||.| .+|.++|..|...|..|+++++....++                                     +.+++
T Consensus       151 k~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t~~L~-------------------------------------~~~~~  193 (276)
T 3ngx_A          151 NTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKTKDIG-------------------------------------SMTRS  193 (276)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHH-------------------------------------HHHHH
T ss_pred             CEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCcccHH-------------------------------------Hhhcc
Confidence            589999987 5899999999999999999986432211                                     34678


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  422 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  422 (721)
                      ||+||-+++-..-++       ..++++++++++..+.
T Consensus       194 ADIVI~Avg~p~~I~-------~~~vk~GavVIDvgi~  224 (276)
T 3ngx_A          194 SKIVVVAVGRPGFLN-------REMVTPGSVVIDVGIN  224 (276)
T ss_dssp             SSEEEECSSCTTCBC-------GGGCCTTCEEEECCCE
T ss_pred             CCEEEECCCCCcccc-------HhhccCCcEEEEeccC
Confidence            999999997422222       2456889988876554

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=95.25  E-value=0.065  Score=56.36  Aligned_cols=72  Identities=13%  Similarity=-0.040  Sum_probs=50.9

Q ss_pred             CceeEEEEcCC-CCcHHHHHHHHHC--CCce-EEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc
Q 004972          304 GVRKVAVIGGG-LMGSGIATAHILN--NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  379 (721)
Q Consensus       304 ~~~kI~VIG~G-~mG~~iA~~la~~--G~~V-~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  379 (721)
                      +..||+|||+| .||...+..+.+.  +.+| .++|+++++++...++                      .+.....+|+
T Consensus        17 ~~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~----------------------~~~~~~~~~~   74 (340)
T 1zh8_A           17 RKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKM----------------------VGNPAVFDSY   74 (340)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHH----------------------HSSCEEESCH
T ss_pred             CceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHH----------------------hCCCcccCCH
Confidence            34589999999 8999999988876  4565 5899999987654321                      1222445666


Q ss_pred             cc-c--CCCCEEEEcccCChH
Q 004972          380 SE-F--KDVDMVIEAVIESVP  397 (721)
Q Consensus       380 ~~-l--~~aDlVIeavpe~~~  397 (721)
                      +. +  .+.|+|++|+|....
T Consensus        75 ~~ll~~~~vD~V~i~tp~~~H   95 (340)
T 1zh8_A           75 EELLESGLVDAVDLTLPVELN   95 (340)
T ss_dssp             HHHHHSSCCSEEEECCCGGGH
T ss_pred             HHHhcCCCCCEEEEeCCchHH
Confidence            43 3  368999999995443

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=95.19  E-value=0.03  Score=54.37  Aligned_cols=38  Identities=24%  Similarity=0.218  Sum_probs=34.1

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHH
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLK  343 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~  343 (721)
                      +||.|.|+ |.+|+.++..|++.|++|++++|+++.++.
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~   39 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQ   39 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHH
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhh
Confidence            47999996 999999999999999999999999877543

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=95.17  E-value=0.026  Score=62.07  Aligned_cols=41  Identities=15%  Similarity=0.137  Sum_probs=36.1

Q ss_pred             CceeEEEEcCCCCcHHHHHHHHHC-CCceEEEeCCHHHHHHH
Q 004972          304 GVRKVAVIGGGLMGSGIATAHILN-NIYVVLKEVNSEYLLKG  344 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~  344 (721)
                      .+++|.|+|+|.+|.+++..|++. |++|+++||++++++..
T Consensus        22 ~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~l   63 (467)
T 2axq_A           22 MGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQAL   63 (467)
T ss_dssp             -CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHH
T ss_pred             CCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHH
Confidence            467899999999999999999998 78999999999876653

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=95.11  E-value=0.046  Score=58.67  Aligned_cols=69  Identities=16%  Similarity=0.044  Sum_probs=49.2

Q ss_pred             eeEEEEcCC-CCcHHHHHHHHHC-CCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccc-
Q 004972          306 RKVAVIGGG-LMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE-  381 (721)
Q Consensus       306 ~kI~VIG~G-~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-  381 (721)
                      .||+|||+| .||...+..+.+. +.+|+ ++|+++++++...+.                      . .+...++++. 
T Consensus         3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~----------------------~-g~~~~~~~~el   59 (387)
T 3moi_A            3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKE----------------------Y-GIPVFATLAEM   59 (387)
T ss_dssp             EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHH----------------------H-TCCEESSHHHH
T ss_pred             eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHH----------------------c-CCCeECCHHHH
Confidence            589999999 9999999988875 56655 899999887654221                      0 1334556633 


Q ss_pred             c--CCCCEEEEcccCChH
Q 004972          382 F--KDVDMVIEAVIESVP  397 (721)
Q Consensus       382 l--~~aDlVIeavpe~~~  397 (721)
                      +  .++|+|++|+|....
T Consensus        60 l~~~~vD~V~i~tp~~~H   77 (387)
T 3moi_A           60 MQHVQMDAVYIASPHQFH   77 (387)
T ss_dssp             HHHSCCSEEEECSCGGGH
T ss_pred             HcCCCCCEEEEcCCcHHH
Confidence            3  369999999995443

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=95.10  E-value=0.013  Score=57.35  Aligned_cols=78  Identities=22%  Similarity=0.201  Sum_probs=47.2

Q ss_pred             eeEEEEcCCCCcHHHHHH--HHHCCCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cc
Q 004972          306 RKVAVIGGGLMGSGIATA--HILNNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  381 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~--la~~G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  381 (721)
                      .+|+|||+|.+|..++..  +...|++++ ++|.+++.....            -.|           -.+...+++ +.
T Consensus        86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~------------i~g-----------v~V~~~~dl~el  142 (215)
T 2vt3_A           86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTE------------VGG-----------VPVYNLDDLEQH  142 (215)
T ss_dssp             -CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCE------------ETT-----------EEEEEGGGHHHH
T ss_pred             CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhH------------hcC-----------CeeechhhHHHH
Confidence            479999999999999994  445577655 899998763321            000           012234455 33


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHh
Q 004972          382 FKDVDMVIEAVIESVPLKQKIFSELEK  408 (721)
Q Consensus       382 l~~aDlVIeavpe~~~~k~~v~~~l~~  408 (721)
                      +++.|.||+|+|  ....+++...+..
T Consensus       143 i~~~D~ViIAvP--s~~~~ei~~~l~~  167 (215)
T 2vt3_A          143 VKDESVAILTVP--AVAAQSITDRLVA  167 (215)
T ss_dssp             CSSCCEEEECSC--HHHHHHHHHHHHH
T ss_pred             HHhCCEEEEecC--chhHHHHHHHHHH
Confidence            444599999999  5445566666544

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=95.09  E-value=0.077  Score=55.76  Aligned_cols=109  Identities=12%  Similarity=0.128  Sum_probs=59.4

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHC-CCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCC-CHHHH-HHhhcCceeccCc-
Q 004972          305 VRKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKL-TQDKA-NNALKMLKGVLDY-  379 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~-~~~~~~i~~~~~~-  379 (721)
                      |.||||+|+|.+|..+++.+..+ +++|+ +.|.+++......+.     +...-.|.. ...+. ...-+.+....+. 
T Consensus         2 mikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~-----dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~   76 (343)
T 2yyy_A            2 PAKVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVE-----KGYKLFVAIPDNERVKLFEDAGIPVEGTIL   76 (343)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHH-----TTCCEEESSCCHHHHHHHHHTTCCCCCBGG
T ss_pred             ceEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHh-----cCCccccccCCCceeecccCCeEEECCchH
Confidence            35899999999999999999876 56765 556655544332210     000111221 11111 1111123333333 


Q ss_pred             cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972          380 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  422 (721)
Q Consensus       380 ~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  422 (721)
                      +.+.++|+|++|.|.....  +...  ..+++.++.++++.+.
T Consensus        77 ~~~~~vDiV~eatg~~~s~--~~a~--~~~l~aG~~VI~sap~  115 (343)
T 2yyy_A           77 DIIEDADIVVDGAPKKIGK--QNLE--NIYKPHKVKAILQGGE  115 (343)
T ss_dssp             GTGGGCSEEEECCCTTHHH--HHHH--HTTTTTTCEEEECTTS
T ss_pred             HhccCCCEEEECCCccccH--HHHH--HHHHHCCCEEEECCCc
Confidence            3447999999999844422  2211  3566777766665543

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=95.07  E-value=0.024  Score=57.82  Aligned_cols=73  Identities=19%  Similarity=0.199  Sum_probs=54.2

Q ss_pred             eeEEEEcCCC-CcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972          306 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  384 (721)
                      +++.|||.|. +|..+|..|...|..|+++++....+.                                     +.+++
T Consensus       166 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~-------------------------------------~~~~~  208 (301)
T 1a4i_A          166 RHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLD-------------------------------------EEVNK  208 (301)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHH-------------------------------------HHHTT
T ss_pred             CEEEEECCCchHHHHHHHHHHhCCCeEEEEECCcccHH-------------------------------------HHhcc
Confidence            5899999995 799999999999999999985422211                                     44688


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  422 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  422 (721)
                      ||+||-|++-.--++.       .++++++++++....
T Consensus       209 ADIVI~Avg~p~~I~~-------~~vk~GavVIDVgi~  239 (301)
T 1a4i_A          209 GDILVVATGQPEMVKG-------EWIKPGAIVIDCGIN  239 (301)
T ss_dssp             CSEEEECCCCTTCBCG-------GGSCTTCEEEECCCB
T ss_pred             CCEEEECCCCcccCCH-------HHcCCCcEEEEccCC
Confidence            9999999974322222       346789998876553

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=95.03  E-value=0.078  Score=58.82  Aligned_cols=37  Identities=24%  Similarity=0.328  Sum_probs=32.3

Q ss_pred             CCceeEEEEcCCCCcHH-HHHHHHHCCCceEEEeCCHH
Q 004972          303 RGVRKVAVIGGGLMGSG-IATAHILNNIYVVLKEVNSE  339 (721)
Q Consensus       303 ~~~~kI~VIG~G~mG~~-iA~~la~~G~~V~l~d~~~~  339 (721)
                      ..+++|.|||.|-.|.+ +|..|.+.|++|+++|..+.
T Consensus        20 ~~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~   57 (494)
T 4hv4_A           20 RRVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPN   57 (494)
T ss_dssp             --CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             ccCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCC
Confidence            45789999999999986 99999999999999998754

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=94.98  E-value=0.15  Score=52.18  Aligned_cols=95  Identities=16%  Similarity=0.189  Sum_probs=63.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceec-cCccc--c
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDYSE--F  382 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~--l  382 (721)
                      .+|..||+|..|.+........|.+|+.+|++++.++.+++.+.+.       |.          .++++. .|...  -
T Consensus       124 ~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~-------gl----------~~v~~v~gDa~~l~d  186 (298)
T 3fpf_A          124 ERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGL-------GV----------DGVNVITGDETVIDG  186 (298)
T ss_dssp             CEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHH-------TC----------CSEEEEESCGGGGGG
T ss_pred             CEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhc-------CC----------CCeEEEECchhhCCC
Confidence            5899999999765433322235889999999999999887654321       10          123321 11111  2


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEec
Q 004972          383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATN  419 (721)
Q Consensus       383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~  419 (721)
                      ...|+|+.+..  ..-+..+++++.+.++|+..++..
T Consensus       187 ~~FDvV~~~a~--~~d~~~~l~el~r~LkPGG~Lvv~  221 (298)
T 3fpf_A          187 LEFDVLMVAAL--AEPKRRVFRNIHRYVDTETRIIYR  221 (298)
T ss_dssp             CCCSEEEECTT--CSCHHHHHHHHHHHCCTTCEEEEE
T ss_pred             CCcCEEEECCC--ccCHHHHHHHHHHHcCCCcEEEEE
Confidence            46899997654  455678999999999988776643

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=94.96  E-value=0.047  Score=57.22  Aligned_cols=100  Identities=17%  Similarity=0.205  Sum_probs=61.1

Q ss_pred             ceeEEEEcC-CCCcHHHHHHHHHC-CCceEEEeCCH---HHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceecc--
Q 004972          305 VRKVAVIGG-GLMGSGIATAHILN-NIYVVLKEVNS---EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL--  377 (721)
Q Consensus       305 ~~kI~VIG~-G~mG~~iA~~la~~-G~~V~l~d~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~--  377 (721)
                      |.||+|+|+ |.+|..+...|.++ .++++.+..+.   ..-+..    ......+  .+.          ..+.+..  
T Consensus         4 M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~----~~~~p~~--~~~----------~~~~v~~~~   67 (337)
T 3dr3_A            4 MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLI----SDLHPQL--KGI----------VELPLQPMS   67 (337)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBH----HHHCGGG--TTT----------CCCBEEEES
T ss_pred             ceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCch----HHhCccc--cCc----------cceeEeccC
Confidence            579999995 99999999999884 56777665443   211111    0000000  010          0122222  


Q ss_pred             Ccccc-CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH
Q 004972          378 DYSEF-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL  425 (721)
Q Consensus       378 ~~~~l-~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i  425 (721)
                      +.+.+ +++|+||+|+|  ...-+++..++   +..++.++++++....
T Consensus        68 ~~~~~~~~~Dvvf~a~p--~~~s~~~~~~~---~~~g~~vIDlSa~fR~  111 (337)
T 3dr3_A           68 DISEFSPGVDVVFLATA--HEVSHDLAPQF---LEAGCVVFDLSGAFRV  111 (337)
T ss_dssp             SGGGTCTTCSEEEECSC--HHHHHHHHHHH---HHTTCEEEECSSTTSS
T ss_pred             CHHHHhcCCCEEEECCC--hHHHHHHHHHH---HHCCCEEEEcCCcccc
Confidence            34455 89999999999  55555555554   3467888899987644

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=94.90  E-value=0.063  Score=57.80  Aligned_cols=75  Identities=19%  Similarity=0.166  Sum_probs=50.4

Q ss_pred             CCceeEEEEcCCC---CcHHHHHHHHHCC-CceE--EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceec
Q 004972          303 RGVRKVAVIGGGL---MGSGIATAHILNN-IYVV--LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV  376 (721)
Q Consensus       303 ~~~~kI~VIG~G~---mG~~iA~~la~~G-~~V~--l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~  376 (721)
                      |+..||||||+|.   ||...+..+...+ ++|+  ++|+++++++...++          -| +.         .....
T Consensus        10 m~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~----------~g-~~---------~~~~~   69 (398)
T 3dty_A           10 PQPIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQ----------LG-VD---------SERCY   69 (398)
T ss_dssp             CSCEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHH----------TT-CC---------GGGBC
T ss_pred             cCcceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHH----------hC-CC---------cceee
Confidence            3456899999999   9999988887665 6776  579999987664321          01 00         01334


Q ss_pred             cCccc-cC-------CCCEEEEcccCChH
Q 004972          377 LDYSE-FK-------DVDMVIEAVIESVP  397 (721)
Q Consensus       377 ~~~~~-l~-------~aDlVIeavpe~~~  397 (721)
                      ++++. ++       +.|+|++|+|....
T Consensus        70 ~~~~~ll~~~~~~~~~vD~V~i~tp~~~H   98 (398)
T 3dty_A           70 ADYLSMFEQEARRADGIQAVSIATPNGTH   98 (398)
T ss_dssp             SSHHHHHHHHTTCTTCCSEEEEESCGGGH
T ss_pred             CCHHHHHhcccccCCCCCEEEECCCcHHH
Confidence            55533 33       48999999995544

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=94.88  E-value=0.033  Score=49.19  Aligned_cols=81  Identities=9%  Similarity=-0.017  Sum_probs=59.3

Q ss_pred             ceeEEEEcC----CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcc
Q 004972          305 VRKVAVIGG----GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS  380 (721)
Q Consensus       305 ~~kI~VIG~----G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  380 (721)
                      .++|+|||+    +.+|..+...|.+.|++|+.++...+.+                             .......+++
T Consensus         4 p~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i-----------------------------~G~~~y~sl~   54 (122)
T 3ff4_A            4 MKKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEV-----------------------------LGKTIINERP   54 (122)
T ss_dssp             CCCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEE-----------------------------TTEECBCSCC
T ss_pred             CCEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcC-----------------------------CCeeccCChH
Confidence            478999998    5679999999999999999988754321                             1244455666


Q ss_pred             ccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEE
Q 004972          381 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA  417 (721)
Q Consensus       381 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~  417 (721)
                      ++.+.|+++.++|  .+...++++++.+.- ...+++
T Consensus        55 dlp~vDlavi~~p--~~~v~~~v~e~~~~g-~k~v~~   88 (122)
T 3ff4_A           55 VIEGVDTVTLYIN--PQNQLSEYNYILSLK-PKRVIF   88 (122)
T ss_dssp             CCTTCCEEEECSC--HHHHGGGHHHHHHHC-CSEEEE
T ss_pred             HCCCCCEEEEEeC--HHHHHHHHHHHHhcC-CCEEEE
Confidence            6655999999999  777778888876652 335554

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=94.87  E-value=0.077  Score=58.60  Aligned_cols=74  Identities=20%  Similarity=0.156  Sum_probs=51.0

Q ss_pred             CCceeEEEEcC----CCCcHHHHHHHHHC--CCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCcee
Q 004972          303 RGVRKVAVIGG----GLMGSGIATAHILN--NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG  375 (721)
Q Consensus       303 ~~~~kI~VIG~----G~mG~~iA~~la~~--G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  375 (721)
                      |+..||+|||+    |.||...+..+.+.  +++|+ ++|+++++++...+.          -| +         .....
T Consensus        37 m~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~----------~g-~---------~~~~~   96 (479)
T 2nvw_A           37 SRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQ----------LQ-L---------KHATG   96 (479)
T ss_dssp             GCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHH----------TT-C---------TTCEE
T ss_pred             CCcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHH----------cC-C---------Cccee
Confidence            34468999999    99999999999885  67764 899999887654321          01 0         01234


Q ss_pred             ccCccc-c--CCCCEEEEcccCCh
Q 004972          376 VLDYSE-F--KDVDMVIEAVIESV  396 (721)
Q Consensus       376 ~~~~~~-l--~~aDlVIeavpe~~  396 (721)
                      .++++. +  .++|+|++|+|...
T Consensus        97 ~~d~~ell~~~~vD~V~I~tp~~~  120 (479)
T 2nvw_A           97 FDSLESFAQYKDIDMIVVSVKVPE  120 (479)
T ss_dssp             ESCHHHHHHCTTCSEEEECSCHHH
T ss_pred             eCCHHHHhcCCCCCEEEEcCCcHH
Confidence            556633 4  47999999999433

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=94.80  E-value=0.027  Score=57.07  Aligned_cols=73  Identities=16%  Similarity=0.163  Sum_probs=54.1

Q ss_pred             eeEEEEcCCC-CcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972          306 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  384 (721)
                      +++.|||.|. +|.++|..|...|..|+++++....++                                     +.+++
T Consensus       161 k~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t~~L~-------------------------------------~~~~~  203 (285)
T 3p2o_A          161 KDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLS-------------------------------------LYTRQ  203 (285)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHH-------------------------------------HHHTT
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------HHhhc
Confidence            5899999876 699999999999999999986432211                                     34688


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  422 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  422 (721)
                      ||+||-+++-.--++       .+.+++++++++....
T Consensus       204 ADIVI~Avg~p~~I~-------~~~vk~GavVIDVgi~  234 (285)
T 3p2o_A          204 ADLIIVAAGCVNLLR-------SDMVKEGVIVVDVGIN  234 (285)
T ss_dssp             CSEEEECSSCTTCBC-------GGGSCTTEEEEECCCE
T ss_pred             CCEEEECCCCCCcCC-------HHHcCCCeEEEEeccC
Confidence            999999997322222       2456889988875543

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=94.73  E-value=0.06  Score=56.91  Aligned_cols=69  Identities=13%  Similarity=0.168  Sum_probs=47.9

Q ss_pred             ceeEEEEcCCCCcHH-HHHHHHHC-CCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccc
Q 004972          305 VRKVAVIGGGLMGSG-IATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  381 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~-iA~~la~~-G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  381 (721)
                      ..||+|||+|.||.. .+..+.+. +.+|+ ++|+++++++.             .            .......++++.
T Consensus         7 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~-------------~------------~~~~~~~~~~~~   61 (352)
T 3kux_A            7 KIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHA-------------D------------WPAIPVVSDPQM   61 (352)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHT-------------T------------CSSCCEESCHHH
T ss_pred             CceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHHh-------------h------------CCCCceECCHHH
Confidence            358999999999997 67777665 67765 89999876431             0            112344566633


Q ss_pred             -c--CCCCEEEEcccCChHH
Q 004972          382 -F--KDVDMVIEAVIESVPL  398 (721)
Q Consensus       382 -l--~~aDlVIeavpe~~~~  398 (721)
                       +  .+.|+|++|+|.....
T Consensus        62 ll~~~~vD~V~i~tp~~~H~   81 (352)
T 3kux_A           62 LFNDPSIDLIVIPTPNDTHF   81 (352)
T ss_dssp             HHHCSSCCEEEECSCTTTHH
T ss_pred             HhcCCCCCEEEEeCChHHHH
Confidence             3  3599999999966553

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=94.72  E-value=0.052  Score=56.35  Aligned_cols=36  Identities=19%  Similarity=0.319  Sum_probs=28.8

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHH--CCCc-eEEEeCCHHH
Q 004972          305 VRKVAVIGGGLMGSGIATAHIL--NNIY-VVLKEVNSEY  340 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~--~G~~-V~l~d~~~~~  340 (721)
                      ..||+|||+|.||..++..+.+  .+.+ |.++|+++++
T Consensus         4 ~irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~   42 (312)
T 1nvm_B            4 KLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAAS   42 (312)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTC
T ss_pred             CCEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhh
Confidence            3589999999999999999865  3555 4578998775

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=94.72  E-value=0.024  Score=58.67  Aligned_cols=91  Identities=18%  Similarity=0.062  Sum_probs=59.0

Q ss_pred             eeEEEEcCCCC-cHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCcee-----c--c
Q 004972          306 RKVAVIGGGLM-GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-----V--L  377 (721)
Q Consensus       306 ~kI~VIG~G~m-G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-----~--~  377 (721)
                      +++.|||.|.| |..+|..|...|..|+++|++..++..              +...-.    .  .....     +  .
T Consensus       178 k~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~--------------ra~~la----~--~~~~~t~~~~t~~~  237 (320)
T 1edz_A          178 KKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFT--------------RGESLK----L--NKHHVEDLGEYSED  237 (320)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEE--------------SCCCSS----C--CCCEEEEEEECCHH
T ss_pred             CEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHh--------------HHHHHh----h--hcccccccccccHh
Confidence            68999999976 999999999999999999998432110              000000    0  00111     1  3


Q ss_pred             Cc-cccCCCCEEEEcccCChH-HHHHHHHHHHhhCCCCeEEEecCCCC
Q 004972          378 DY-SEFKDVDMVIEAVIESVP-LKQKIFSELEKACPPHCILATNTSTI  423 (721)
Q Consensus       378 ~~-~~l~~aDlVIeavpe~~~-~k~~v~~~l~~~~~~~~ii~s~ts~~  423 (721)
                      ++ +.+++||+||-|++-.-- +..       ..+++++++++.++.-
T Consensus       238 ~L~e~l~~ADIVIsAtg~p~~vI~~-------e~vk~GavVIDVgi~r  278 (320)
T 1edz_A          238 LLKKCSLDSDVVITGVPSENYKFPT-------EYIKEGAVCINFACTK  278 (320)
T ss_dssp             HHHHHHHHCSEEEECCCCTTCCBCT-------TTSCTTEEEEECSSSC
T ss_pred             HHHHHhccCCEEEECCCCCcceeCH-------HHcCCCeEEEEcCCCc
Confidence            44 567899999999973221 222       2357889888877654

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=94.65  E-value=0.099  Score=57.29  Aligned_cols=35  Identities=20%  Similarity=0.121  Sum_probs=32.3

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHH
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  339 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~  339 (721)
                      -+||.|||.|..|.+.|..|.+.|++|+++|.++.
T Consensus         9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~   43 (451)
T 3lk7_A            9 NKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPF   43 (451)
T ss_dssp             TCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCG
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcc
Confidence            47899999999999999999999999999999653

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=94.64  E-value=0.03  Score=56.71  Aligned_cols=73  Identities=14%  Similarity=0.086  Sum_probs=53.5

Q ss_pred             eeEEEEcCCC-CcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972          306 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  384 (721)
                      +++.|||.|. +|.++|..|...|..|++.++....++                                     +.+++
T Consensus       162 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~-------------------------------------~~~~~  204 (285)
T 3l07_A          162 AYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLK-------------------------------------SHTTK  204 (285)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHH-------------------------------------HHHTT
T ss_pred             CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------Hhccc
Confidence            5899999876 799999999999999999976422111                                     34688


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  422 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  422 (721)
                      ||+||-+++-..-++       ...+++++++++....
T Consensus       205 ADIVI~Avg~p~~I~-------~~~vk~GavVIDvgi~  235 (285)
T 3l07_A          205 ADILIVAVGKPNFIT-------ADMVKEGAVVIDVGIN  235 (285)
T ss_dssp             CSEEEECCCCTTCBC-------GGGSCTTCEEEECCCE
T ss_pred             CCEEEECCCCCCCCC-------HHHcCCCcEEEEeccc
Confidence            999999997322222       2456889988875543

>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A

Probab=94.62  E-value=0.077  Score=60.45  Aligned_cols=82  Identities=11%  Similarity=0.073  Sum_probs=57.9

Q ss_pred             CCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCccccccccccccCHHHHHHHHHcCCCc--CHHH----
Q 004972           97 CKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSI--TSEE----  170 (721)
Q Consensus        97 ~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~~~~l~r~~G~~~a~~l~ltg~~~--~a~e----  170 (721)
                      ...|+|++|.|.|.|||..+...||++|+.+++.+.+.                 |+.....  .+|+.+  +.++    
T Consensus       245 ~~IPqIsvV~G~c~GGgAY~paL~D~vImv~~s~iflt-----------------GP~vIk~--~tGeeV~~s~eeLGGA  305 (758)
T 3k8x_A          245 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIILT-----------------GAPAINK--MLGREVYTSNLQLGGT  305 (758)
T ss_dssp             TTSCEEEEECSCEETHHHHHHHHTCEEEEETTCCEESS-----------------CHHHHHH--HHTSCCCSCTHHHHSH
T ss_pred             cCCCEEEEEccCCchHHHHHHhhCCEEEEECCceEEEe-----------------CHHHHHH--HhCCccccCchhcchh
Confidence            46899999999999999999999999999988755443                 3332222  266665  4433    


Q ss_pred             --HHHcCCccEEcCCchHHHHHHHHHHHHHhc
Q 004972          171 --GWKLGLIDAVVTSEELLKVSRLWALDIAAR  200 (721)
Q Consensus       171 --A~~~Glv~~vv~~~~l~~~a~~~a~~~a~~  200 (721)
                        -...|++|.+++.|+   ++.+.++++.+.
T Consensus       306 ~vh~~sGvad~va~dd~---eal~~ir~lLsy  334 (758)
T 3k8x_A          306 QIMYNNGVSHLTAVDDL---AGVEKIVEWMSY  334 (758)
T ss_dssp             HHHTTTTSSSEEESSHH---HHHHHHHHHHTT
T ss_pred             hHHHhcCCeeEEecCHH---HHHHHHHHHHhh
Confidence              236899999997653   445555555543

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=94.60  E-value=0.018  Score=58.35  Aligned_cols=73  Identities=15%  Similarity=0.134  Sum_probs=53.8

Q ss_pred             eeEEEEcCCC-CcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972          306 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  384 (721)
                      +++.|||.|. .|..+|..|...|..|+++++....+.                                     +.+++
T Consensus       160 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~-------------------------------------~~~~~  202 (288)
T 1b0a_A          160 LNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLR-------------------------------------HHVEN  202 (288)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHH-------------------------------------HHHHH
T ss_pred             CEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------HHhcc
Confidence            5899999996 699999999999999999985543222                                     33577


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  422 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  422 (721)
                      ||+||-+++..--++.       .++++++++++....
T Consensus       203 ADIVI~Avg~p~lI~~-------~~vk~GavVIDVgi~  233 (288)
T 1b0a_A          203 ADLLIVAVGKPGFIPG-------DWIKEGAIVIDVGIN  233 (288)
T ss_dssp             CSEEEECSCCTTCBCT-------TTSCTTCEEEECCCE
T ss_pred             CCEEEECCCCcCcCCH-------HHcCCCcEEEEccCC
Confidence            9999999973322222       235788888875543

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=94.53  E-value=0.03  Score=57.46  Aligned_cols=34  Identities=24%  Similarity=0.309  Sum_probs=31.4

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHH
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSE  339 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~  339 (721)
                      |||.|.|+ |.+|+.++..|.+.||+|++..|+++
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~   35 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPG   35 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            57999998 99999999999999999999998764

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=94.51  E-value=0.014  Score=57.81  Aligned_cols=40  Identities=13%  Similarity=0.189  Sum_probs=34.5

Q ss_pred             CCCceeEEEEcC-CCCcHHHHHHHHHCC-CceEEEeCCHHHH
Q 004972          302 PRGVRKVAVIGG-GLMGSGIATAHILNN-IYVVLKEVNSEYL  341 (721)
Q Consensus       302 ~~~~~kI~VIG~-G~mG~~iA~~la~~G-~~V~l~d~~~~~~  341 (721)
                      ++.|++|.|.|+ |.+|..++..|++.| ++|++++|+++.+
T Consensus        20 ~~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~   61 (236)
T 3qvo_A           20 QGHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKI   61 (236)
T ss_dssp             --CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGS
T ss_pred             cCcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhh
Confidence            455789999995 999999999999999 8999999998753

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=94.47  E-value=0.081  Score=55.53  Aligned_cols=37  Identities=22%  Similarity=0.400  Sum_probs=28.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHC-CCceE-EEeCCHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLL  342 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~  342 (721)
                      .||||+|+|.||..+++.+.++ +++|+ +.|++++...
T Consensus         2 ikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~   40 (337)
T 1cf2_P            2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEA   40 (337)
T ss_dssp             EEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHH
T ss_pred             eEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHH
Confidence            5899999999999999999874 55664 4677655433

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=94.45  E-value=0.026  Score=55.20  Aligned_cols=37  Identities=24%  Similarity=0.429  Sum_probs=33.9

Q ss_pred             ceeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHH
Q 004972          305 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYL  341 (721)
Q Consensus       305 ~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~  341 (721)
                      |+||.|.|+ |.+|+.++..|++.|++|++.+++++..
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~   41 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKI   41 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGC
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccc
Confidence            578999996 9999999999999999999999998753

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=94.44  E-value=0.078  Score=57.48  Aligned_cols=74  Identities=18%  Similarity=0.191  Sum_probs=48.9

Q ss_pred             CceeEEEEcCCC---CcHHHHHHHHHCC-CceE--EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceecc
Q 004972          304 GVRKVAVIGGGL---MGSGIATAHILNN-IYVV--LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL  377 (721)
Q Consensus       304 ~~~kI~VIG~G~---mG~~iA~~la~~G-~~V~--l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  377 (721)
                      +..||+|||+|.   ||...+..+...+ ++|+  ++|+++++++...++.          | +         ......+
T Consensus        36 ~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~----------g-~---------~~~~~~~   95 (417)
T 3v5n_A           36 KRIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGREL----------G-L---------DPSRVYS   95 (417)
T ss_dssp             CCEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHH----------T-C---------CGGGBCS
T ss_pred             CcceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHc----------C-C---------CcccccC
Confidence            345899999999   9999888887765 5765  6799999876643211          1 0         0012345


Q ss_pred             Ccc-ccC-------CCCEEEEcccCChH
Q 004972          378 DYS-EFK-------DVDMVIEAVIESVP  397 (721)
Q Consensus       378 ~~~-~l~-------~aDlVIeavpe~~~  397 (721)
                      +++ .++       +.|+|++|+|....
T Consensus        96 ~~~~ll~~~~~~~~~vD~V~I~tp~~~H  123 (417)
T 3v5n_A           96 DFKEMAIREAKLKNGIEAVAIVTPNHVH  123 (417)
T ss_dssp             CHHHHHHHHHHCTTCCSEEEECSCTTSH
T ss_pred             CHHHHHhcccccCCCCcEEEECCCcHHH
Confidence            553 333       48999999996654

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=94.26  E-value=0.042  Score=57.96  Aligned_cols=69  Identities=13%  Similarity=0.049  Sum_probs=45.1

Q ss_pred             eeEEEEcCCCCcHHHHHH-H-HH-CCCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcc-
Q 004972          306 RKVAVIGGGLMGSGIATA-H-IL-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-  380 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~-l-a~-~G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-  380 (721)
                      .||+|||+|.||..+... + .. .+++|+ ++|+++++.+..            +           ....+...++++ 
T Consensus         3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~------------~-----------~~~~~~~~~~~~~   59 (345)
T 3f4l_A            3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQA------------P-----------IYSHIHFTSDLDE   59 (345)
T ss_dssp             EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGS------------G-----------GGTTCEEESCTHH
T ss_pred             eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHH------------H-----------hcCCCceECCHHH
Confidence            589999999999874333 3 32 367776 899988764211            0           112345566774 


Q ss_pred             ccC--CCCEEEEcccCChH
Q 004972          381 EFK--DVDMVIEAVIESVP  397 (721)
Q Consensus       381 ~l~--~aDlVIeavpe~~~  397 (721)
                      .++  ++|+|++|+|....
T Consensus        60 ll~~~~~D~V~i~tp~~~h   78 (345)
T 3f4l_A           60 VLNDPDVKLVVVCTHADSH   78 (345)
T ss_dssp             HHTCTTEEEEEECSCGGGH
T ss_pred             HhcCCCCCEEEEcCChHHH
Confidence            344  48999999995544

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=94.25  E-value=0.037  Score=56.08  Aligned_cols=73  Identities=16%  Similarity=0.145  Sum_probs=53.1

Q ss_pred             eeEEEEcCCC-CcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972          306 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  384 (721)
                      +++.|||.|. +|.++|..|...|..|+++.+....++                                     +.+++
T Consensus       162 k~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T~~L~-------------------------------------~~~~~  204 (286)
T 4a5o_A          162 MDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTRDLA-------------------------------------DHVSR  204 (286)
T ss_dssp             CEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTCSCHH-------------------------------------HHHHT
T ss_pred             CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCCcCHH-------------------------------------HHhcc
Confidence            5899999865 899999999999999999975322111                                     33678


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  422 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  422 (721)
                      ||+||-+++-..-++       ...+++++++++..+.
T Consensus       205 ADIVI~Avg~p~~I~-------~~~vk~GavVIDvgi~  235 (286)
T 4a5o_A          205 ADLVVVAAGKPGLVK-------GEWIKEGAIVIDVGIN  235 (286)
T ss_dssp             CSEEEECCCCTTCBC-------GGGSCTTCEEEECCSC
T ss_pred             CCEEEECCCCCCCCC-------HHHcCCCeEEEEeccc
Confidence            999999997322222       2456888888875543

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=94.19  E-value=0.038  Score=56.60  Aligned_cols=33  Identities=27%  Similarity=0.264  Sum_probs=30.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  338 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~  338 (721)
                      .||.|||+|-.|+.++..|++.|. +++++|.+.
T Consensus        37 ~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           37 FAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            589999999999999999999997 899999875

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=94.16  E-value=0.074  Score=56.61  Aligned_cols=67  Identities=15%  Similarity=0.075  Sum_probs=47.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHC--CCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cc
Q 004972          306 RKVAVIGGGLMGSGIATAHILN--NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  381 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~--G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  381 (721)
                      .||+|||+| +|.--+..+.+.  +++++ ++|+++++.++..++                      . .+...+|+ +.
T Consensus         8 ~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~----------------------~-gv~~~~~~~~l   63 (372)
T 4gmf_A            8 QRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHA----------------------F-GIPLYTSPEQI   63 (372)
T ss_dssp             EEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHH----------------------T-TCCEESSGGGC
T ss_pred             CEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHH----------------------h-CCCEECCHHHH
Confidence            589999999 798777777654  56766 789999887654221                      1 23445677 45


Q ss_pred             cCCCCEEEEcccCCh
Q 004972          382 FKDVDMVIEAVIESV  396 (721)
Q Consensus       382 l~~aDlVIeavpe~~  396 (721)
                      +++.|+|+.|+|...
T Consensus        64 ~~~~D~v~i~~p~~~   78 (372)
T 4gmf_A           64 TGMPDIACIVVRSTV   78 (372)
T ss_dssp             CSCCSEEEECCC--C
T ss_pred             hcCCCEEEEECCCcc
Confidence            688999999999654

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=94.10  E-value=0.033  Score=56.30  Aligned_cols=72  Identities=22%  Similarity=0.224  Sum_probs=52.9

Q ss_pred             eeEEEEcCCCC-cHHHHHHHHHC--CCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcccc
Q 004972          306 RKVAVIGGGLM-GSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  382 (721)
Q Consensus       306 ~kI~VIG~G~m-G~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l  382 (721)
                      +++.|||.|.| |..+|..|...  |..|++++++...+.                                     +.+
T Consensus       159 k~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t~~L~-------------------------------------~~~  201 (281)
T 2c2x_A          159 AHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGTRDLP-------------------------------------ALT  201 (281)
T ss_dssp             CEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTCSCHH-------------------------------------HHH
T ss_pred             CEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECchhHHH-------------------------------------HHH
Confidence            58999999976 99999999999  889999975542211                                     346


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCC
Q 004972          383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  421 (721)
Q Consensus       383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts  421 (721)
                      ++||+||-|++-.--++.       ..+++++++++...
T Consensus       202 ~~ADIVI~Avg~p~~I~~-------~~vk~GavVIDVgi  233 (281)
T 2c2x_A          202 RQADIVVAAVGVAHLLTA-------DMVRPGAAVIDVGV  233 (281)
T ss_dssp             TTCSEEEECSCCTTCBCG-------GGSCTTCEEEECCE
T ss_pred             hhCCEEEECCCCCcccCH-------HHcCCCcEEEEccC
Confidence            889999999973322222       33578888886554

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=94.04  E-value=0.11  Score=53.98  Aligned_cols=36  Identities=17%  Similarity=0.231  Sum_probs=30.5

Q ss_pred             ceeEEEEcC-CCCcHHHHHHHHHCCCce-EEEeCCHHH
Q 004972          305 VRKVAVIGG-GLMGSGIATAHILNNIYV-VLKEVNSEY  340 (721)
Q Consensus       305 ~~kI~VIG~-G~mG~~iA~~la~~G~~V-~l~d~~~~~  340 (721)
                      |.||||||+ |.||...+..+...+.++ .++|+++++
T Consensus         3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~   40 (318)
T 3oa2_A            3 MKNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSV   40 (318)
T ss_dssp             CCEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCC
T ss_pred             ceEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHH
Confidence            569999999 799999999999888765 588888764

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=94.03  E-value=0.25  Score=51.19  Aligned_cols=40  Identities=18%  Similarity=0.104  Sum_probs=35.5

Q ss_pred             ceeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 004972          305 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG  344 (721)
Q Consensus       305 ~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  344 (721)
                      -++|.|.|+ |.+|+.++..|++.|++|++.+++++..+..
T Consensus        11 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~   51 (342)
T 1y1p_A           11 GSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANL   51 (342)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHH
Confidence            468999998 9999999999999999999999998775543

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=93.90  E-value=0.028  Score=55.55  Aligned_cols=32  Identities=28%  Similarity=0.329  Sum_probs=30.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCceEEEeCCH
Q 004972          307 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  338 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~  338 (721)
                      .|+|||+|.-|.+.|..|+++|++|+++|+++
T Consensus         4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~   35 (336)
T 3kkj_A            4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSR   35 (336)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            59999999999999999999999999999864

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=93.85  E-value=0.13  Score=53.40  Aligned_cols=36  Identities=11%  Similarity=0.032  Sum_probs=30.6

Q ss_pred             ceeEEEEcC-CCCcHHHHHHHHHCCCce-EEEeCCHHH
Q 004972          305 VRKVAVIGG-GLMGSGIATAHILNNIYV-VLKEVNSEY  340 (721)
Q Consensus       305 ~~kI~VIG~-G~mG~~iA~~la~~G~~V-~l~d~~~~~  340 (721)
                      |.||+|||+ |.||...+..+...+.+| .++|+++++
T Consensus         3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~   40 (312)
T 3o9z_A            3 MTRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNV   40 (312)
T ss_dssp             CCEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCC
T ss_pred             ceEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHH
Confidence            569999999 789999999999888765 588988775

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=93.77  E-value=0.06  Score=56.26  Aligned_cols=65  Identities=18%  Similarity=0.184  Sum_probs=44.1

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCC---------Cce-EEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCce
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNN---------IYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK  374 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G---------~~V-~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~  374 (721)
                      ..||+|||+|.||+.++..+.+..         .+| .++|++.++.                ++ +.         ...
T Consensus         3 ~irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~----------------~~-~~---------~~~   56 (332)
T 2ejw_A            3 ALKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKP----------------RA-IP---------QEL   56 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSC----------------CS-SC---------GGG
T ss_pred             eeEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHh----------------hc-cC---------ccc
Confidence            358999999999999999988763         444 4777775431                11 11         112


Q ss_pred             eccCccccCCCCEEEEcccCC
Q 004972          375 GVLDYSEFKDVDMVIEAVIES  395 (721)
Q Consensus       375 ~~~~~~~l~~aDlVIeavpe~  395 (721)
                      .++|++.+-+.|+|++|+|..
T Consensus        57 ~~~d~~~ll~iDvVve~t~~~   77 (332)
T 2ejw_A           57 LRAEPFDLLEADLVVEAMGGV   77 (332)
T ss_dssp             EESSCCCCTTCSEEEECCCCS
T ss_pred             ccCCHHHHhCCCEEEECCCCc
Confidence            456664433999999999855

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=93.77  E-value=0.059  Score=54.98  Aligned_cols=100  Identities=14%  Similarity=0.119  Sum_probs=57.1

Q ss_pred             ceeEEEEc-CCCCcHHHHHHHHHC-CCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-c
Q 004972          305 VRKVAVIG-GGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  380 (721)
Q Consensus       305 ~~kI~VIG-~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  380 (721)
                      +.||+|+| +|.||..++..+... +++++ ++|+++..... .+     ...+...+          ...+..++|+ +
T Consensus        21 ~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G-~d-----~gel~G~~----------~~gv~v~~dl~~   84 (288)
T 3ijp_A           21 SMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVD-KD-----ASILIGSD----------FLGVRITDDPES   84 (288)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTT-SB-----GGGGTTCS----------CCSCBCBSCHHH
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccc-cc-----hHHhhccC----------cCCceeeCCHHH
Confidence            35899999 899999999988754 67755 56876432000 00     00000000          0124556676 4


Q ss_pred             ccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH
Q 004972          381 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL  425 (721)
Q Consensus       381 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i  425 (721)
                      .+.++|+||++.+  ++...+.+..   .+..+.-+++.|++++.
T Consensus        85 ll~~aDVvIDFT~--p~a~~~~~~~---~l~~Gv~vViGTTG~~~  124 (288)
T 3ijp_A           85 AFSNTEGILDFSQ--PQASVLYANY---AAQKSLIHIIGTTGFSK  124 (288)
T ss_dssp             HTTSCSEEEECSC--HHHHHHHHHH---HHHHTCEEEECCCCCCH
T ss_pred             HhcCCCEEEEcCC--HHHHHHHHHH---HHHcCCCEEEECCCCCH
Confidence            4689999999886  5443333333   33345555555655543

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=93.73  E-value=0.028  Score=60.16  Aligned_cols=34  Identities=32%  Similarity=0.425  Sum_probs=31.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  339 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~  339 (721)
                      +||.|||+|.-|..+|..|+++|++|+++|++++
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~   35 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSA   35 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            4899999999999999999999999999998653

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=93.72  E-value=0.11  Score=53.06  Aligned_cols=41  Identities=20%  Similarity=0.116  Sum_probs=36.5

Q ss_pred             eeEEEEc-CCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHH
Q 004972          306 RKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  346 (721)
Q Consensus       306 ~kI~VIG-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  346 (721)
                      ++|.|+| +|-+|.+++..|++.|.+|++++|++++++...+
T Consensus       120 k~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~  161 (287)
T 1lu9_A          120 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAAD  161 (287)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHH
Confidence            5799999 8999999999999999999999999887766543

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=93.70  E-value=0.063  Score=57.31  Aligned_cols=70  Identities=21%  Similarity=0.224  Sum_probs=44.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHH--------CCCce-EEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceecc
Q 004972          307 KVAVIGGGLMGSGIATAHIL--------NNIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL  377 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~--------~G~~V-~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  377 (721)
                      ||||||+|.||..-+..+..        .+.+| -++|+++++++...++                      .+.-...+
T Consensus        27 rvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~----------------------~g~~~~y~   84 (393)
T 4fb5_A           27 GIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGE----------------------FGFEKATA   84 (393)
T ss_dssp             EEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHH----------------------HTCSEEES
T ss_pred             cEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHH----------------------hCCCeecC
Confidence            79999999999876655432        24454 4889999887764321                      12223456


Q ss_pred             Cccc-c--CCCCEEEEcccCChHH
Q 004972          378 DYSE-F--KDVDMVIEAVIESVPL  398 (721)
Q Consensus       378 ~~~~-l--~~aDlVIeavpe~~~~  398 (721)
                      |++. +  .+.|+|++|+|.....
T Consensus        85 d~~ell~~~~iDaV~IatP~~~H~  108 (393)
T 4fb5_A           85 DWRALIADPEVDVVSVTTPNQFHA  108 (393)
T ss_dssp             CHHHHHHCTTCCEEEECSCGGGHH
T ss_pred             CHHHHhcCCCCcEEEECCChHHHH
Confidence            6643 3  4689999999955543

>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans}

Probab=93.67  E-value=0.26  Score=52.34  Aligned_cols=154  Identities=12%  Similarity=0.116  Sum_probs=79.6

Q ss_pred             CCceeEEEEcC-CCCcHHHHHHHHHCC-CceEEE-eCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc
Q 004972          303 RGVRKVAVIGG-GLMGSGIATAHILNN-IYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  379 (721)
Q Consensus       303 ~~~~kI~VIG~-G~mG~~iA~~la~~G-~~V~l~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  379 (721)
                      |++.||+|||+ |+.|.-+...|.++- .++..+ ..+...=+.    +..... ......+.....+   -.+...+..
T Consensus        17 M~~~kVaIvGAtG~vG~ell~lL~~hp~~el~~l~aS~~saGk~----~~~~~~-~~~~~~~p~~~~~---~~v~~~~~~   88 (381)
T 3hsk_A           17 MSVKKAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSAGKK----YKDAAS-WKQTETLPETEQD---IVVQECKPE   88 (381)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSB----HHHHCC-CCCSSCCCHHHHT---CBCEESSSC
T ss_pred             CCccEEEEECCCChHHHHHHHHHHcCCCceEEEeeccccccCCC----HHHhcc-ccccccccccccc---ceEEeCchh
Confidence            45578999995 999999999888764 356433 222111000    000000 0000001100000   012212222


Q ss_pred             cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCC---------
Q 004972          380 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVM---------  450 (721)
Q Consensus       380 ~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~---------  450 (721)
                      +.+++||+||+|+|  ....+++..++   ...++.++++++......        .-.....+.|+.++.         
T Consensus        89 ~~~~~~Dvvf~alp--~~~s~~~~~~~---~~~G~~VIDlSa~fR~~~--------~vplvv~~vn~~~~~l~E~~r~~~  155 (381)
T 3hsk_A           89 GNFLECDVVFSGLD--ADVAGDIEKSF---VEAGLAVVSNAKNYRREK--------DVPLVVPIVNPEHIDVVENKVKQA  155 (381)
T ss_dssp             TTGGGCSEEEECCC--HHHHHHHHHHH---HHTTCEEEECCSTTTTCT--------TSCEECTTTCGGGGHHHHHHHHHH
T ss_pred             hhcccCCEEEECCC--hhHHHHHHHHH---HhCCCEEEEcCCcccCCC--------CCcEEecccCHHHcCCHhhhhhhh
Confidence            25789999999999  55555665554   346788899998765421        111223344443331         


Q ss_pred             ------CeeEEecCCCCCHH-HHHHHHHHHHHcC
Q 004972          451 ------PLLEIVRTERTSAQ-VILDLMTVGKIIK  477 (721)
Q Consensus       451 ------~lvEiv~~~~t~~e-~~~~~~~l~~~lG  477 (721)
                            +--.+|.++++.+. .+-.+.+|.+..|
T Consensus       156 ~~~~~i~~~~iIaNPgC~tt~~~laL~PL~~~~g  189 (381)
T 3hsk_A          156 VSKGGKKPGFIICISNCSTAGLVAPLKPLVEKFG  189 (381)
T ss_dssp             HHTTCCCCCEEEEECCHHHHHHHHHHHHHHHHHC
T ss_pred             cccccccCCcEEECCCcHHHHHHHHHHHHHHhcC
Confidence                  22236666665544 4555677887767

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=93.65  E-value=0.066  Score=52.08  Aligned_cols=35  Identities=14%  Similarity=0.269  Sum_probs=32.2

Q ss_pred             eEEEEc-CCCCcHHHHHHHHHCCCceEEEeCCHHHH
Q 004972          307 KVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYL  341 (721)
Q Consensus       307 kI~VIG-~G~mG~~iA~~la~~G~~V~l~d~~~~~~  341 (721)
                      ||.|.| .|.+|..++..|++.|++|++++|+++..
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~   37 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQV   37 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGS
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccch
Confidence            799999 59999999999999999999999998753

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=93.61  E-value=0.73  Score=51.03  Aligned_cols=159  Identities=11%  Similarity=0.056  Sum_probs=92.8

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEE
Q 004972           26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (721)
Q Consensus        26 Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav  105 (721)
                      -.++++-.....+.++.++.. .+-+|.|.=. ..|..|.+-++.          -.......++ ..+.+...|+|+.|
T Consensus       344 G~~~~~~~~Kaar~i~~a~~~-~~Plv~lvDt-pG~~~G~~~E~~----------g~~~~~A~~~-~a~~~~~vP~isvI  410 (527)
T 1vrg_A          344 GVLDIDSSDKAARFIRFLDAF-NIPILTFVDT-PGYLPGVAQEHG----------GIIRHGAKLL-YAYSEATVPKITVI  410 (527)
T ss_dssp             GCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHHHT----------THHHHHHHHH-HHHHHCCSCEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHhhc-CCCeEEEecC-CCCcCchhhHHh----------HHHHHHHHHH-HHHhcCCCCEEEEE
Confidence            579999999999999888643 4445555322 124444332211          1122333455 56788999999999


Q ss_pred             CCcccccchHhhh----hcCEEEeeCCceEeCc--ccccCccccccccc--cccCHHHHHH-HH--HcCCCcCHHHHHHc
Q 004972          106 EGLALGGGLELAM----GCHARIAAPKTQLGLP--ELTLGVIPGTQRLP--RLVGLSKAIE-MM--LLSKSITSEEGWKL  174 (721)
Q Consensus       106 ~G~a~GgG~~lal----acD~ria~~~a~~~~p--e~~~Gl~P~~~~l~--r~~G~~~a~~-l~--ltg~~~~a~eA~~~  174 (721)
                      -|.|.|||..-..    .+|+++|.+++.++.-  |....+   .++-.  +.--....++ +.  +.-+.-++..+.+.
T Consensus       411 ~g~~~gGg~~am~~~~~~~d~~~a~p~a~~~Vm~pegaa~I---l~r~~~~~~~d~~~~~~~~~~~y~~~~~~p~~~~~~  487 (527)
T 1vrg_A          411 LRKAYGGAYIAMGSKHLGADMVLAWPSAEIAVMGPEGAANI---IFKREIEASSNPEETRRKLIEEYKQQFANPYIAASR  487 (527)
T ss_dssp             EEEEEHHHHHHTTCGGGTCSEEEECTTCEEESSCHHHHHHH---HTHHHHHHSSCHHHHHHHHHHHHHHHTSSHHHHHHT
T ss_pred             eCCcccHHHHHhcCCCCCCCEEEEcCCCeEEecCHHHHHHH---HhhhhhhcccCHHHHHHHHHHHHHHhhCCHHHHHHc
Confidence            9999988764332    3899888888777642  111111   11100  0000111111 22  11123567889999


Q ss_pred             CCccEEcCCchHHHHHHHHHHHHHhc
Q 004972          175 GLIDAVVTSEELLKVSRLWALDIAAR  200 (721)
Q Consensus       175 Glv~~vv~~~~l~~~a~~~a~~~a~~  200 (721)
                      |+||.|+++.+.........+.+..+
T Consensus       488 g~iD~II~p~~tR~~l~~~L~~l~~~  513 (527)
T 1vrg_A          488 GYVDMVIDPRETRKYIMRALEVCETK  513 (527)
T ss_dssp             TSSSEECCGGGHHHHHHHHHHHHTTC
T ss_pred             CCCCeeeCHHHHHHHHHHHHHHHhcC
Confidence            99999999887766655555554433

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=93.59  E-value=0.11  Score=54.47  Aligned_cols=85  Identities=15%  Similarity=0.212  Sum_probs=48.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHC-CCce-EEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHH--HHHHhhcCceeccCc-c
Q 004972          306 RKVAVIGGGLMGSGIATAHILN-NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD--KANNALKMLKGVLDY-S  380 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~-G~~V-~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~i~~~~~~-~  380 (721)
                      .||||+|+|.||..++..+.+. +.+| .+.|++++.+....+..     ...-.+.+...  ....  ..+....++ +
T Consensus         3 irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~-----g~~~~~~~~~~v~~~~~--~~~~v~~d~~~   75 (334)
T 2czc_A            3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKEL-----GIPVYAASEEFIPRFEK--EGFEVAGTLND   75 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHT-----TCCEEESSGGGHHHHHH--HTCCCSCBHHH
T ss_pred             cEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhc-----CccccccccccceeccC--CceEEcCcHHH
Confidence            5899999999999999998875 4465 46777766655432110     00000000000  0000  112334455 3


Q ss_pred             ccCCCCEEEEcccCChH
Q 004972          381 EFKDVDMVIEAVIESVP  397 (721)
Q Consensus       381 ~l~~aDlVIeavpe~~~  397 (721)
                      .+.++|+|++|.|....
T Consensus        76 l~~~vDvV~~aTp~~~h   92 (334)
T 2czc_A           76 LLEKVDIIVDATPGGIG   92 (334)
T ss_dssp             HHTTCSEEEECCSTTHH
T ss_pred             hccCCCEEEECCCcccc
Confidence            34689999999996553

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=93.58  E-value=1.1  Score=50.12  Aligned_cols=162  Identities=12%  Similarity=-0.006  Sum_probs=90.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEE
Q 004972           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (721)
Q Consensus        25 ~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaa  104 (721)
                      .-++.+...+.+..+++.+.+.. +-+|.|.-.|+     +.+.+-..... . ...+.+.+.+.  ..+.....|+|++
T Consensus       119 gGS~g~~~~~Ki~Ra~e~A~~~~-lPvI~l~dSgG-----Arl~~qe~~~~-~-l~~~g~if~~~--~~ls~~~iP~Isv  188 (588)
T 3gf3_A          119 AGAWVPGQAENLIRCSDAAKMMH-LPLIYLLNCSG-----VEFPNQDKVYP-N-RRGGGTPFFRN--SELNQLGIPVIVG  188 (588)
T ss_dssp             GGCBCTTHHHHHHHHHHHHHHHT-CCEEEEECCCC-----BCGGGHHHHSS-S-TTSTTHHHHHH--HHHHHTTCCEEEE
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEcCCC-----cCccccccccc-c-hhhHHHHHHHH--HHHhcCCCCEEEE
Confidence            37788888888999888887543 45666654443     33321111000 0 11112222222  2255678999999


Q ss_pred             ECCcccccchHhhhhcCEEEeeCCceEeCcccc--cCccccccccccc---cCHHHHHHHHHcCCCcCHHHHH--HcCCc
Q 004972          105 VEGLALGGGLELAMGCHARIAAPKTQLGLPELT--LGVIPGTQRLPRL---VGLSKAIEMMLLSKSITSEEGW--KLGLI  177 (721)
Q Consensus       105 v~G~a~GgG~~lalacD~ria~~~a~~~~pe~~--~Gl~P~~~~l~r~---~G~~~a~~l~ltg~~~~a~eA~--~~Glv  177 (721)
                      |.|.|.|||...++++|++++.+++.+++..-.  -|+-|--...+.-   +......+-..+.+.+...+..  ..|++
T Consensus       189 v~Gp~~gGgAy~a~~~~vim~~~~a~i~~aGP~vI~~~~p~g~~~~~~~~~~~~~~~ge~~vs~eeLGGa~~h~~~sGv~  268 (588)
T 3gf3_A          189 IYGTNPAGGGYHSISPTILIAHQDANMAVGGAGILSGMNPKGYIDDEAAEQIIAAQIENSKLKVPAPGSVPIHYDETGFF  268 (588)
T ss_dssp             ECSEEETHHHHHHHSSSEEEEETTCEEESSCCC---------------CHHHHHHHHHHHHTTCCCTTBHHHHTTTSCCS
T ss_pred             EeCCCCchhhhHhhCCeEEEEECCcEEEecChhhhcccCccccccccchhhhhhhhccccccChhhccchhhhccccccc
Confidence            999999998877888898888899998875332  1211100001110   0011111111356667666666  58999


Q ss_pred             cEEcCCchHHHHHHHHHHHHHh
Q 004972          178 DAVVTSEELLKVSRLWALDIAA  199 (721)
Q Consensus       178 ~~vv~~~~l~~~a~~~a~~~a~  199 (721)
                      |.++++|+   ++.+.++++.+
T Consensus       269 d~~a~de~---~al~~~r~~ls  287 (588)
T 3gf3_A          269 REVYQNDL---GVIDGIKKYIS  287 (588)
T ss_dssp             CEEESSHH---HHHHHHHHHHH
T ss_pred             eEEeCCHH---HHHHHHHHHHH
Confidence            99997653   34445555444

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=93.55  E-value=0.034  Score=58.08  Aligned_cols=36  Identities=28%  Similarity=0.459  Sum_probs=28.0

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHC---------CCceE-EEeCCHHH
Q 004972          305 VRKVAVIGGGLMGSGIATAHILN---------NIYVV-LKEVNSEY  340 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~---------G~~V~-l~d~~~~~  340 (721)
                      |.||+|||+|.||+.++..+.+.         +++|+ ++|++++.
T Consensus         2 mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~   47 (327)
T 3do5_A            2 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSI   47 (327)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEE
T ss_pred             cEEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHh
Confidence            46899999999999999999875         45554 66776543

>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*

Probab=93.53  E-value=0.17  Score=58.25  Aligned_cols=82  Identities=16%  Similarity=0.129  Sum_probs=57.7

Q ss_pred             CCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCccccccccccccCHHHHHHHHHcCCCc--CH------
Q 004972           97 CKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSI--TS------  168 (721)
Q Consensus        97 ~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~~~~l~r~~G~~~a~~l~ltg~~~--~a------  168 (721)
                      ...|+|++|.|.|.|||..++..||++|+.+++.+.+.                 |+.. .+. .+|+.+  +.      
T Consensus       258 ~~iP~IsvV~G~~~GGgAy~~~lgD~vI~~~~a~i~lt-----------------Gp~v-i~~-~~Ge~vy~s~e~LGGa  318 (793)
T 2x24_A          258 DEIVTISMVSCRALGIGAYLVRLGQRVIQVENSHIILT-----------------GATA-LNK-VLGRDVYTSNNQLGGV  318 (793)
T ss_dssp             HHSCEEEEECSEEETHHHHHHHHTCCEEEETTCEEESS-----------------CHHH-HHH-HHSSCCCSCHHHHHSH
T ss_pred             CCCCEEEEEecCCchHHHHHHhhCCeEEEeccccEEec-----------------CHHH-HHH-hcCCcccCChhhhccH
Confidence            46999999999999999999999999999998777654                 3222 222 345555  32      


Q ss_pred             HHHHHcCCccEEcCCchHHHHHHHHHHHHHhc
Q 004972          169 EEGWKLGLIDAVVTSEELLKVSRLWALDIAAR  200 (721)
Q Consensus       169 ~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~  200 (721)
                      +-....|++|.+++++.   ++...++++.+.
T Consensus       319 ~v~~~~Gv~d~vv~dd~---ea~~~ir~~Lsy  347 (793)
T 2x24_A          319 QIMHHNGVSHVTVPDDF---EGVCTILEWLSY  347 (793)
T ss_dssp             HHHTTTTSCSEEESSHH---HHHHHHHHHHTT
T ss_pred             HHHHhcCceEEEeCCHH---HHHHHHHHHHHh
Confidence            22557899999997642   344444444443

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=93.52  E-value=0.14  Score=54.17  Aligned_cols=33  Identities=21%  Similarity=0.409  Sum_probs=30.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  338 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~  338 (721)
                      .+|.|||+|-.|+.+|..|+.+|. +++++|.+.
T Consensus       119 ~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~  152 (353)
T 3h5n_A          119 AKVVILGCGGIGNHVSVILATSGIGEIILIDNDQ  152 (353)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCB
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCc
Confidence            489999999999999999999997 899999863

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=93.47  E-value=0.15  Score=53.21  Aligned_cols=72  Identities=11%  Similarity=0.070  Sum_probs=48.1

Q ss_pred             CCCceeEEEEcCCCCcH-HHHHHHHHC-CCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccC
Q 004972          302 PRGVRKVAVIGGGLMGS-GIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD  378 (721)
Q Consensus       302 ~~~~~kI~VIG~G~mG~-~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  378 (721)
                      .|+..||+|||+|.||. ..+..+... +.+|+ ++|++++.                              ..+...++
T Consensus        22 ~M~~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~------------------------------~g~~~~~~   71 (330)
T 4ew6_A           22 SMSPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTV------------------------------EGVNSYTT   71 (330)
T ss_dssp             CCCCEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCC------------------------------TTSEEESS
T ss_pred             cCCCceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhh------------------------------cCCCccCC
Confidence            34556899999999998 688888775 66654 78887542                              02344556


Q ss_pred             ccc-c---CCCCEEEEcccCChHHHHHHHHH
Q 004972          379 YSE-F---KDVDMVIEAVIESVPLKQKIFSE  405 (721)
Q Consensus       379 ~~~-l---~~aDlVIeavpe~~~~k~~v~~~  405 (721)
                      ++. +   .+.|+|++|+|  ...-.++..+
T Consensus        72 ~~~ll~~~~~vD~V~i~tp--~~~H~~~~~~  100 (330)
T 4ew6_A           72 IEAMLDAEPSIDAVSLCMP--PQYRYEAAYK  100 (330)
T ss_dssp             HHHHHHHCTTCCEEEECSC--HHHHHHHHHH
T ss_pred             HHHHHhCCCCCCEEEEeCC--cHHHHHHHHH
Confidence            633 3   45899999999  4433344433

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=93.42  E-value=1.7  Score=48.09  Aligned_cols=162  Identities=15%  Similarity=0.209  Sum_probs=97.4

Q ss_pred             EEeCCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHh
Q 004972           18 ITLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE   95 (721)
Q Consensus        18 i~l~~p~~--Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~   95 (721)
                      |.=|+|..  -.++++-.....+.++.++.. .+-+|.|.=.++ |..|.+-++          ....+....++ .++.
T Consensus       336 vian~~~~~~G~l~~~~a~Kaarfi~~c~~~-~iPlv~lvDtpG-f~~G~~~E~----------~gi~~~~Ak~l-~a~a  402 (530)
T 3iav_A          336 IVANQPMQFAGCLDITASEKAARFVRTCDAF-NVPVLTFVDVPG-FLPGVDQEH----------DGIIRRGAKLI-FAYA  402 (530)
T ss_dssp             EEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEECC-BCCCHHHHH----------TTHHHHHHHHH-HHHH
T ss_pred             EEEecCcccCCCCCHHHHHHHHHHHHHHHhc-CCCEEEEeeCCC-CCccHHHHH----------hhHHHHHHHHH-HHHH
Confidence            33456643  679999999999988877754 355555533222 666654221          12233444556 6688


Q ss_pred             hCCCcEEEEECCcccccchHhhhh-----cCEEEeeCCceEeCc--ccccCccccccccccccC------HHHHHHHH--
Q 004972           96 DCKKPIVAAVEGLALGGGLELAMG-----CHARIAAPKTQLGLP--ELTLGVIPGTQRLPRLVG------LSKAIEMM--  160 (721)
Q Consensus        96 ~~~~p~Iaav~G~a~GgG~~lala-----cD~ria~~~a~~~~p--e~~~Gl~P~~~~l~r~~G------~~~a~~l~--  160 (721)
                      +...|+|+.|-|.++|||. ++++     .|+++|.+++.++.-  |....+     .+.+.+-      ...-.++.  
T Consensus       403 ~a~vP~itvI~g~~~GGa~-~am~~~~~~~d~~~awp~a~~~Vm~~egaa~i-----l~r~~~~~~~~d~~~~~~~~~~~  476 (530)
T 3iav_A          403 EATVPLITVITRKAFGGAY-VVMGSKHLGADLNLAWPTAQIAVMGAQGAVNI-----LHRRTIADAGDDAEATRARLIQE  476 (530)
T ss_dssp             HCCSCEEEEEEEEEEHHHH-HHTTCGGGTCSEEEECTTCEEESSCHHHHHHH-----HTSTTTSTTCTTCHHHHHHHHHH
T ss_pred             hCCCCEEEEEeCCcchHHH-HHhcCCCCCCCEEEEcCCceEecCCHHHHHHH-----HhhhhhhhcccCHHHHHHHHHHH
Confidence            9999999999999998765 5554     699999888887752  221111     1111110      11111111  


Q ss_pred             HcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHH
Q 004972          161 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIA  198 (721)
Q Consensus       161 ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a  198 (721)
                      +.-+.-++..|.+.|+||.|+++.+.........+.+.
T Consensus       477 y~~~~~~p~~aa~~~~vD~VIdP~~TR~~l~~~l~~~~  514 (530)
T 3iav_A          477 YEDALLNPYTAAERGYVDAVIMPSDTRRHIVRGLRQLR  514 (530)
T ss_dssp             HHHHHSSSHHHHHTTSSSEECCGGGHHHHHHHHHHHHT
T ss_pred             HHHhcCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHh
Confidence            11112366778899999999998887665544444433

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=93.26  E-value=0.11  Score=53.27  Aligned_cols=93  Identities=19%  Similarity=-0.001  Sum_probs=59.2

Q ss_pred             ceeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccc-c
Q 004972          305 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE-F  382 (721)
Q Consensus       305 ~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-l  382 (721)
                      ..||+|+|+ |.||..++..+.+.|++ .++.+++.....             +            ...+....++++ .
T Consensus         7 ~~rVaViG~sG~~G~~~~~~l~~~g~~-~V~~V~p~~~g~-------------~------------~~G~~vy~sl~el~   60 (288)
T 2nu8_A            7 NTKVICQGFTGSQGTFHSEQAIAYGTK-MVGGVTPGKGGT-------------T------------HLGLPVFNTVREAV   60 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTTC-------------E------------ETTEEEESSHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCe-EEEEeCCCcccc-------------e------------eCCeeccCCHHHHh
Confidence            358999998 99999999999888988 455665542100             0            012444555533 3


Q ss_pred             C--CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHH
Q 004972          383 K--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI  427 (721)
Q Consensus       383 ~--~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~  427 (721)
                      +  ++|++|+++|  .....+++.+..+. .-..++ ..|.+++..+
T Consensus        61 ~~~~~D~viI~tP--~~~~~~~~~ea~~~-Gi~~iV-i~t~G~~~~~  103 (288)
T 2nu8_A           61 AATGATASVIYVP--APFCKDSILEAIDA-GIKLII-TITEGIPTLD  103 (288)
T ss_dssp             HHHCCCEEEECCC--GGGHHHHHHHHHHT-TCSEEE-ECCCCCCHHH
T ss_pred             hcCCCCEEEEecC--HHHHHHHHHHHHHC-CCCEEE-EECCCCCHHH
Confidence            4  7999999999  56666766665543 223333 3455666543

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=93.23  E-value=0.021  Score=60.42  Aligned_cols=32  Identities=28%  Similarity=0.215  Sum_probs=30.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN  337 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~  337 (721)
                      .||.|+|+|.+|.++|..+...|. +|+++|++
T Consensus       193 ~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          193 VKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            589999999999999999999998 89999998

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=93.22  E-value=0.12  Score=54.15  Aligned_cols=30  Identities=20%  Similarity=0.307  Sum_probs=24.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHC-CCceEEEe
Q 004972          306 RKVAVIGGGLMGSGIATAHILN-NIYVVLKE  335 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~-G~~V~l~d  335 (721)
                      .||||+|+|.+|..+++.+.+. +.+|+.+.
T Consensus         4 ikVgI~G~GrIGr~l~R~l~~~p~vevvaI~   34 (337)
T 3e5r_O            4 IKIGINGFGRIGRLVARVALQSEDVELVAVN   34 (337)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEE
T ss_pred             eEEEEECcCHHHHHHHHHHhCCCCeEEEEEE
Confidence            5899999999999999998876 56666444

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=93.22  E-value=1.1  Score=49.71  Aligned_cols=158  Identities=15%  Similarity=0.151  Sum_probs=92.4

Q ss_pred             CCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCC
Q 004972           21 INPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCK   98 (721)
Q Consensus        21 ~~p~~--Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   98 (721)
                      |+|..  -.++++-.....+.++.++.. .+-+|.|-=. ..|..|.+-++-          -..+....++ ..+.+..
T Consensus       354 n~~~~~~G~l~~~~a~Kaar~i~~a~~~-~iPlv~lvDt-~Gf~~G~~~E~~----------Gi~~~ga~~l-~a~~~~~  420 (548)
T 2bzr_A          354 NQPTHFAGCLDINASEKAARFVRTCDCF-NIPIVMLVDV-PGFLPGTDQEYN----------GIIRRGAKLL-YAYGEAT  420 (548)
T ss_dssp             ECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHHHT----------THHHHHHHHH-HHHHHCC
T ss_pred             ECCcccCCCCCHHHHHHHHHHHHHHHhc-CCCEEEEeec-cCCCCChHHHHh----------hHHHHHHHHH-HHHhCCC
Confidence            45532  679999999999988888654 3444555322 235555442221          1122334555 5678899


Q ss_pred             CcEEEEECCcccccchHhh----hhcCEEEeeCCceEeCc--ccccCccccccccccccC--------HHHHHH-HHH--
Q 004972           99 KPIVAAVEGLALGGGLELA----MGCHARIAAPKTQLGLP--ELTLGVIPGTQRLPRLVG--------LSKAIE-MML--  161 (721)
Q Consensus        99 ~p~Iaav~G~a~GgG~~la----lacD~ria~~~a~~~~p--e~~~Gl~P~~~~l~r~~G--------~~~a~~-l~l--  161 (721)
                      .|+|+.|-|.|+|||..-.    +.+|+++|.++++++.-  |....+     .+...+-        ....++ +.-  
T Consensus       421 VP~isvI~g~~~Ggg~~am~~~~~~~d~~~awp~a~i~Vmgpegaa~I-----l~r~~~~~~~~~g~~~~~~~~~~~~~y  495 (548)
T 2bzr_A          421 VPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIAVMGASGAVGF-----VYRQQLAEAAANGEDIDKLRLRLQQEY  495 (548)
T ss_dssp             SCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEESSCHHHHHHH-----HTCCC----------CHHHHHHHHHHH
T ss_pred             CCEEEEEeCCcchHHHHHhccccCCCCEEEEcCCCEEEecCHHHHHHH-----HhhhHHhhhhcccccHHHHHHHHHHHH
Confidence            9999999999998876443    34899999888887642  211111     1111110        001111 211  


Q ss_pred             cCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHH
Q 004972          162 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALD  196 (721)
Q Consensus       162 tg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~  196 (721)
                      .-..-++..+.+.|+||.|+++.+.........+.
T Consensus       496 ~~~~~~p~~~a~~g~iD~II~p~~tR~~l~~~L~~  530 (548)
T 2bzr_A          496 EDTLVNPYVAAERGYVGAVIPPSHTRGYIGTALRL  530 (548)
T ss_dssp             HHHHSBSHHHHHTTSSSEECCGGGHHHHHHHHHHH
T ss_pred             HHhhCCHHHHHhcCCCceeeCHHHHHHHHHHHHHH
Confidence            11123456789999999999988766554444433

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=93.20  E-value=0.061  Score=57.36  Aligned_cols=70  Identities=19%  Similarity=0.154  Sum_probs=47.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCC--------Cce-EEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceecc
Q 004972          307 KVAVIGGGLMGSGIATAHILNN--------IYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL  377 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~~G--------~~V-~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  377 (721)
                      ||||||+|.||..-+..+....        .+| .++|+++++++...++                      .+.-...+
T Consensus         8 rvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~----------------------~g~~~~~~   65 (390)
T 4h3v_A            8 GIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGK----------------------LGWSTTET   65 (390)
T ss_dssp             EEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHH----------------------HTCSEEES
T ss_pred             cEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHH----------------------cCCCcccC
Confidence            7999999999998877766532        244 5889999987765321                      12224456


Q ss_pred             Cccc-c--CCCCEEEEcccCChHH
Q 004972          378 DYSE-F--KDVDMVIEAVIESVPL  398 (721)
Q Consensus       378 ~~~~-l--~~aDlVIeavpe~~~~  398 (721)
                      |++. +  .+.|+|++|+|.....
T Consensus        66 d~~~ll~~~~iDaV~I~tP~~~H~   89 (390)
T 4h3v_A           66 DWRTLLERDDVQLVDVCTPGDSHA   89 (390)
T ss_dssp             CHHHHTTCTTCSEEEECSCGGGHH
T ss_pred             CHHHHhcCCCCCEEEEeCChHHHH
Confidence            6633 4  4689999999955543

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=93.14  E-value=0.11  Score=53.31  Aligned_cols=34  Identities=21%  Similarity=0.200  Sum_probs=31.7

Q ss_pred             ceeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCH
Q 004972          305 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNS  338 (721)
Q Consensus       305 ~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~  338 (721)
                      +++|.|.|+ |.+|+.++..|++.|++|++.+|++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   36 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKT   36 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCS
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCC
Confidence            468999997 9999999999999999999999986

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=93.10  E-value=0.28  Score=48.84  Aligned_cols=31  Identities=19%  Similarity=0.385  Sum_probs=26.1

Q ss_pred             eEEEEcC-CCCcHHHHHHHHHC-CCceE-EEeCC
Q 004972          307 KVAVIGG-GLMGSGIATAHILN-NIYVV-LKEVN  337 (721)
Q Consensus       307 kI~VIG~-G~mG~~iA~~la~~-G~~V~-l~d~~  337 (721)
                      ||+|+|+ |.||..++..+... |++|+ ++|++
T Consensus         2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~   35 (245)
T 1p9l_A            2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG   35 (245)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC
Confidence            8999997 99999999998865 89876 56653

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=93.09  E-value=0.15  Score=55.33  Aligned_cols=64  Identities=20%  Similarity=0.147  Sum_probs=43.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHH----------CCCce-EEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCce
Q 004972          306 RKVAVIGGGLMGSGIATAHIL----------NNIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK  374 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~----------~G~~V-~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~  374 (721)
                      -||+|||+|.||+.++..+.+          .+++| .++|+++++.+..           .              ....
T Consensus        11 irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~-----------~--------------~~~~   65 (444)
T 3mtj_A           11 IHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEAL-----------A--------------GGLP   65 (444)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHH-----------H--------------TTCC
T ss_pred             ccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhh-----------c--------------ccCc
Confidence            489999999999999987754          23444 4788888764321           0              1123


Q ss_pred             eccCccc-c--CCCCEEEEcccC
Q 004972          375 GVLDYSE-F--KDVDMVIEAVIE  394 (721)
Q Consensus       375 ~~~~~~~-l--~~aDlVIeavpe  394 (721)
                      .++|++. +  .+.|+|++|+|.
T Consensus        66 ~~~d~~ell~d~diDvVve~tp~   88 (444)
T 3mtj_A           66 LTTNPFDVVDDPEIDIVVELIGG   88 (444)
T ss_dssp             EESCTHHHHTCTTCCEEEECCCS
T ss_pred             ccCCHHHHhcCCCCCEEEEcCCC
Confidence            4566633 3  468999999985

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=93.07  E-value=0.14  Score=52.99  Aligned_cols=34  Identities=18%  Similarity=0.269  Sum_probs=31.7

Q ss_pred             ceeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCH
Q 004972          305 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNS  338 (721)
Q Consensus       305 ~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~  338 (721)
                      +++|.|.|+ |.+|+.++..|++.|++|++.+|++
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   38 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPL   38 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCC
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCc
Confidence            568999996 9999999999999999999999986

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=93.01  E-value=0.066  Score=57.23  Aligned_cols=73  Identities=16%  Similarity=0.139  Sum_probs=48.1

Q ss_pred             CCceeEEEEc-CCCCcHH-HH----HHHHHCC-Cce----------EEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHH
Q 004972          303 RGVRKVAVIG-GGLMGSG-IA----TAHILNN-IYV----------VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDK  365 (721)
Q Consensus       303 ~~~~kI~VIG-~G~mG~~-iA----~~la~~G-~~V----------~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  365 (721)
                      ++..||+||| +|.||.. .+    ..+.+.+ ..+          .++|+++++++...+.                  
T Consensus         4 ~~~irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~------------------   65 (383)
T 3oqb_A            4 TQRLGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKR------------------   65 (383)
T ss_dssp             CEEEEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHH------------------
T ss_pred             CceeEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHH------------------
Confidence            3345899999 9999998 66    6665543 332          4999999987664321                  


Q ss_pred             HHHhhcCceeccCccc-c--CCCCEEEEcccCChH
Q 004972          366 ANNALKMLKGVLDYSE-F--KDVDMVIEAVIESVP  397 (721)
Q Consensus       366 ~~~~~~~i~~~~~~~~-l--~~aDlVIeavpe~~~  397 (721)
                          .+.....+|++. +  .+.|+|++|+|....
T Consensus        66 ----~~~~~~~~~~~~ll~~~~iD~V~i~tp~~~h   96 (383)
T 3oqb_A           66 ----FNIARWTTDLDAALADKNDTMFFDAATTQAR   96 (383)
T ss_dssp             ----TTCCCEESCHHHHHHCSSCCEEEECSCSSSS
T ss_pred             ----hCCCcccCCHHHHhcCCCCCEEEECCCchHH
Confidence                111134566633 3  458999999996554

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=93.00  E-value=0.1  Score=55.00  Aligned_cols=98  Identities=14%  Similarity=0.113  Sum_probs=55.4

Q ss_pred             ceeEEEEc-CCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcccc
Q 004972          305 VRKVAVIG-GGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  382 (721)
Q Consensus       305 ~~kI~VIG-~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l  382 (721)
                      +.||+|+| .|.+|..+.+.|.+... +++.+....+.-.+        +....  +.+.     . ...+... +.+.+
T Consensus         4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~--------~~~~~--~~~~-----g-~~~~~~~-~~~~~   66 (345)
T 2ozp_A            4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEP--------VHFVH--PNLR-----G-RTNLKFV-PPEKL   66 (345)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSB--------GGGTC--GGGT-----T-TCCCBCB-CGGGC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCch--------hHHhC--chhc-----C-ccccccc-chhHh
Confidence            46899999 59999999999987654 77666543221100        00000  0000     0 0012111 12235


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCC
Q 004972          383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID  424 (721)
Q Consensus       383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~  424 (721)
                      .++|+||+|+|...  ..++...+   +..++.++++++...
T Consensus        67 ~~vDvV~~a~g~~~--s~~~a~~~---~~aG~~VId~Sa~~r  103 (345)
T 2ozp_A           67 EPADILVLALPHGV--FAREFDRY---SALAPVLVDLSADFR  103 (345)
T ss_dssp             CCCSEEEECCCTTH--HHHTHHHH---HTTCSEEEECSSTTS
T ss_pred             cCCCEEEEcCCcHH--HHHHHHHH---HHCCCEEEEcCcccc
Confidence            78999999999443  33443333   456777888877654

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=92.94  E-value=0.91  Score=50.20  Aligned_cols=163  Identities=15%  Similarity=0.073  Sum_probs=94.9

Q ss_pred             CCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCC
Q 004972           21 INPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCK   98 (721)
Q Consensus        21 ~~p~~--Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   98 (721)
                      |+|..  -.++++-.....+.++.++.. .+-+|.|.=. ..|..|.+-++          .-..+....++ ..+.+..
T Consensus       333 n~~~~~~G~~~~~~a~Kaar~i~~~~~~-~iPlv~lvDt-pGf~~G~~~E~----------~Gi~~~~A~~l-~a~a~~~  399 (523)
T 1on3_A          333 NQPSVMSGCLDINASDKAAEFVNFCDSF-NIPLVQLVDV-PGFLPGVQQEY----------GGIIRHGAKML-YAYSEAT  399 (523)
T ss_dssp             ECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHHH----------TTHHHHHHHHH-HHHHHCC
T ss_pred             ecCCccCCCCCHHHHHHHHHHHHHHHhc-CCCeEEEEeC-CCcCcchHHHH----------hhHHHHHHHHH-HHHhcCC
Confidence            45532  579999999999999888643 4445555322 23555543221          11223344555 5688899


Q ss_pred             CcEEEEECCcccccchHhhhh----cCEEEeeCCceEeCc--ccccCccccccccc--cccCHHHHHH-HH--HcCCCcC
Q 004972           99 KPIVAAVEGLALGGGLELAMG----CHARIAAPKTQLGLP--ELTLGVIPGTQRLP--RLVGLSKAIE-MM--LLSKSIT  167 (721)
Q Consensus        99 ~p~Iaav~G~a~GgG~~lala----cD~ria~~~a~~~~p--e~~~Gl~P~~~~l~--r~~G~~~a~~-l~--ltg~~~~  167 (721)
                      .|+|+.|-|.++|||..-...    +|+++|.+++.++.-  |....+   .++-.  +.--....++ +.  +.-+.-+
T Consensus       400 vP~itvI~g~~~Ggg~~am~~~~~~~d~~~a~p~a~~~Vm~pegaa~I---l~r~~~~~~~d~~~~~~~~~~~y~~~~~~  476 (523)
T 1on3_A          400 VPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIAVMGAEGAANV---IFRKEIKAADDPDAMRAEKIEEYQNAFNT  476 (523)
T ss_dssp             SCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTTCEEESSCHHHHHHH---HTHHHHHHSSCHHHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEEeCCcccHHHHHhcccCCCCCEEEEcCCCeEEecCHHHHHHH---HhhhhhhcccCHHHHHHHHHHHHHHhhCC
Confidence            999999999999888744433    788888877777642  111111   11100  0000111111 21  1111246


Q ss_pred             HHHHHHcCCccEEcCCchHHHHHHHHHHHHHh
Q 004972          168 SEEGWKLGLIDAVVTSEELLKVSRLWALDIAA  199 (721)
Q Consensus       168 a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~  199 (721)
                      +..+.+.|+||.|+++.+.........+.+..
T Consensus       477 p~~~a~~g~iD~II~p~~tR~~l~~~L~~l~~  508 (523)
T 1on3_A          477 PYVAAARGQVDDVIDPADTRRKIASALEMYAT  508 (523)
T ss_dssp             HHHHHHTTSSSEECCGGGHHHHHHHHHHHGGG
T ss_pred             HHHHHhcCCCCEeeCHHHHHHHHHHHHHHHhc
Confidence            67899999999999988776655555554443

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=92.94  E-value=0.18  Score=52.73  Aligned_cols=36  Identities=19%  Similarity=0.224  Sum_probs=31.4

Q ss_pred             CCceeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCH
Q 004972          303 RGVRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNS  338 (721)
Q Consensus       303 ~~~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~  338 (721)
                      |..++|.|.|+ |.+|+.++..|++.|++|++++|++
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   44 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPG   44 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence            34568999998 9999999999999999999999976

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=92.93  E-value=1.1  Score=49.49  Aligned_cols=159  Identities=12%  Similarity=0.057  Sum_probs=93.3

Q ss_pred             EEeCCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHh
Q 004972           18 ITLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE   95 (721)
Q Consensus        18 i~l~~p~~--Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~   95 (721)
                      |.=|+|..  -.++++-.....+.++.++.. .+-+|.|.=.+ .|..|.+-++          .-..+....++ .++.
T Consensus       342 vian~~~~~~G~l~~~~a~Kaarfi~lcd~~-~iPlv~lvDtp-Gf~~G~~~E~----------~Gi~~~gAk~l-~a~a  408 (531)
T 3n6r_B          342 VVANQPLVLAGCLDIDSSRKAARFVRFCDAF-EIPLLTLIDVP-GFLPGTSQEY----------GGVIKHGAKLL-YAYG  408 (531)
T ss_dssp             EEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEEC-SBCCSHHHHH----------TTHHHHHHHHH-HHHH
T ss_pred             EEEecccccCCCCCHHHHHHHHHHHHHhhcc-CCCEEEEeCCC-CCCCCHHHHH----------hhHHHHHHHHH-HHHH
Confidence            33356643  579999999988888877654 35555553222 2444443221          11233444556 6788


Q ss_pred             hCCCcEEEEECCcccccchHhhh----hcCEEEeeCCceEeCc--ccccCcccccccccccc---CHHHHHHHHHcCCCc
Q 004972           96 DCKKPIVAAVEGLALGGGLELAM----GCHARIAAPKTQLGLP--ELTLGVIPGTQRLPRLV---GLSKAIEMMLLSKSI  166 (721)
Q Consensus        96 ~~~~p~Iaav~G~a~GgG~~lal----acD~ria~~~a~~~~p--e~~~Gl~P~~~~l~r~~---G~~~a~~l~ltg~~~  166 (721)
                      +..+|+|+.|-|.++|||..-..    .+|+++|.+++.++.-  |....+     .+.+.+   -....+.--+.-+.-
T Consensus       409 ~a~VP~itvI~g~~~Ggg~~am~~~~~~~d~~~awp~A~i~Vm~pegaa~I-----l~r~~~~~~~~~~~~~~~y~~~~~  483 (531)
T 3n6r_B          409 EATVPMVTVITRKAYGGAYVVMSSKHLRADFNYAWPTAEVAVMGAKGATEI-----IHRGDLGDPEKIAQHTADYEERFA  483 (531)
T ss_dssp             HCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEESSCHHHHHHH-----HCCTTTTSTTHHHHHHHHHHHHHS
T ss_pred             hCCCCEEEEEcCCccchhhhhccCccCCCCeEEEcCCceEecCCHHHHHHH-----HhcccccchhHHHHHHHHHHHHhc
Confidence            99999999999999988863333    3899998888877652  221111     111111   011111111111223


Q ss_pred             CHHHHHHcCCccEEcCCchHHHHHHHHH
Q 004972          167 TSEEGWKLGLIDAVVTSEELLKVSRLWA  194 (721)
Q Consensus       167 ~a~eA~~~Glv~~vv~~~~l~~~a~~~a  194 (721)
                      ++..|.+.|+||.|+++.+.........
T Consensus       484 ~p~~aa~~~~vD~vIdP~~TR~~l~~~l  511 (531)
T 3n6r_B          484 NPFVASERGFVDEVIQPRSTRKRVARAF  511 (531)
T ss_dssp             SSHHHHHHTSSSEECCGGGHHHHHHHHH
T ss_pred             CHHHHHhcCccCcccCHHHHHHHHHHHH
Confidence            5556788999999999888766444433

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=92.88  E-value=0.49  Score=52.99  Aligned_cols=158  Identities=11%  Similarity=0.102  Sum_probs=96.2

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEE
Q 004972           26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (721)
Q Consensus        26 Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav  105 (721)
                      -.++++-.....+.++.++. ..+-+|.|.=. ..|..|.+-++          .-..+....++ .++.+...|+|+.|
T Consensus       385 G~l~~~~a~Kaarfi~~c~~-~~iPlv~lvDt-pGf~~G~~~E~----------~Gi~~~gA~~~-~a~a~a~vP~itvI  451 (587)
T 1pix_A          385 GKLYRQGLVKMNEFVTLCAR-DRLPIVWIQDT-TGIDVGNDAEK----------AELLGLGQSLI-YSIQTSHIPQFEIT  451 (587)
T ss_dssp             TEECHHHHHHHHHHHHHHHH-TTCCEEEEECC-CEECCSHHHHH----------TTHHHHHHHHH-HHHHTCCCCEEEEE
T ss_pred             CCcCHHHHHHHHHHHHHhhc-CCCCeEEEecC-CCCCCcHHHHH----------HHHHHHHHHHH-HHHHhCCCCEEEEE
Confidence            46889999999999987764 34555666432 23555543221          11233444566 67899999999999


Q ss_pred             CCcccccchHhhhh-----c--CEEEeeCCceEeCc--ccccCccccccccccc----cC---HHHH---HHHH--HcCC
Q 004972          106 EGLALGGGLELAMG-----C--HARIAAPKTQLGLP--ELTLGVIPGTQRLPRL----VG---LSKA---IEMM--LLSK  164 (721)
Q Consensus       106 ~G~a~GgG~~lala-----c--D~ria~~~a~~~~p--e~~~Gl~P~~~~l~r~----~G---~~~a---~~l~--ltg~  164 (721)
                      -|-++|||. ++++     +  |+++|.+++.++.-  |....+   .++-...    .|   ...+   .++.  +. +
T Consensus       452 ~g~~~Ggg~-~am~~~~~~~~~d~~~a~p~A~~~Vm~pegaa~I---l~r~~~~~~~~~g~~~~~~~~~~~~~~~~y~-~  526 (587)
T 1pix_A          452 LRKGTAAAH-YVLGGPQGNDTNAFSIGTAATEIAVMNGETAATA---MYSRRLAKDRKAGKDLQPTIDKMNNLIQAFY-T  526 (587)
T ss_dssp             CSEEETTHH-HHTTCTTCTTTEEEEEECTTCEEESSCHHHHHHH---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH-H
T ss_pred             cCCCccHHH-HHhcCcccCcccceeeeccCCeEecCCHHHHHHH---HHhhhhhhhhhcCCChHHHHHHHHHHHHHHH-H
Confidence            999998874 5554     4  99888888887742  111111   1111000    00   0000   0111  11 1


Q ss_pred             CcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcC
Q 004972          165 SITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARR  201 (721)
Q Consensus       165 ~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~  201 (721)
                      ..++..|.+.|+||.|+++.+.........+.+.+.+
T Consensus       527 ~~~p~~aa~~g~iD~VI~p~~tR~~l~~~L~~~~~~~  563 (587)
T 1pix_A          527 KSRPKVCAELGLVDEIVDMNKIRGYVEAFTEAAYQNP  563 (587)
T ss_dssp             TTSHHHHHHHTSSSEECCTTTHHHHHHHHHHHHTTSC
T ss_pred             hCCHHHHHhcCCCccccCHHHHHHHHHHHHHHHhcCC
Confidence            4788899999999999998887766666655555444

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=92.85  E-value=0.092  Score=58.60  Aligned_cols=36  Identities=19%  Similarity=0.209  Sum_probs=32.8

Q ss_pred             ceeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHH
Q 004972          305 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEY  340 (721)
Q Consensus       305 ~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~  340 (721)
                      ++||.|.|+ |.+|+.++..|++.|++|+++++++..
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~  183 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPK  183 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence            468999995 999999999999999999999998764

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=92.67  E-value=0.14  Score=53.71  Aligned_cols=102  Identities=17%  Similarity=0.160  Sum_probs=55.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHC-CCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCC-C-CHHHHHHhhc--CceeccCc
Q 004972          306 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGK-L-TQDKANNALK--MLKGVLDY  379 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~-~-~~~~~~~~~~--~i~~~~~~  379 (721)
                      .||||+|+|.||..+++.+.+. +.+|+ +.|++++.......          ..+. . .....+..+.  .+....+.
T Consensus         2 ikVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~----------~~g~~~~~~~~~~~~~~~~~v~v~~~~   71 (340)
T 1b7g_O            2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAH----------RRGIRIYVPQQSIKKFEESGIPVAGTV   71 (340)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHH----------HTTCCEECCGGGHHHHHTTTCCCCCCH
T ss_pred             eEEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHH----------hcCcceecCcCHHHHhcccccccccCH
Confidence            4899999999999999998875 44654 66776555433211          1110 0 0000011011  12223333


Q ss_pred             cc-cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972          380 SE-FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  422 (721)
Q Consensus       380 ~~-l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  422 (721)
                      +. +.++|+||+|.|....  .+....   ++..++.++++++.
T Consensus        72 e~l~~~vDvV~~aTp~~~s--~~~a~~---~~~aG~kvV~~sa~  110 (340)
T 1b7g_O           72 EDLIKTSDIVVDTTPNGVG--AQYKPI---YLQLQRNAIFQGGE  110 (340)
T ss_dssp             HHHHHHCSEEEECCSTTHH--HHHHHH---HHHTTCEEEECTTS
T ss_pred             hHhhcCCCEEEECCCCchh--HHHHHH---HHHcCCeEEEeCCC
Confidence            33 3579999999994433  333333   23345555565554

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=92.55  E-value=0.062  Score=54.66  Aligned_cols=37  Identities=16%  Similarity=0.145  Sum_probs=33.7

Q ss_pred             CceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHH
Q 004972          304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY  340 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~  340 (721)
                      .++||.|.|+|.+|+.++..|.+.|++|++++++++.
T Consensus         2 ~~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~   38 (286)
T 3gpi_A            2 SLSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQP   38 (286)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            3578999999999999999999999999999998654

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=92.44  E-value=0.11  Score=53.73  Aligned_cols=34  Identities=15%  Similarity=0.283  Sum_probs=31.7

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHH
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSE  339 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~  339 (721)
                      ++|.|+|+ |.+|+.++..|++.|++|++++|+++
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~   46 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS   46 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTC
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCC
Confidence            58999996 99999999999999999999999875

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=92.42  E-value=0.15  Score=52.19  Aligned_cols=34  Identities=24%  Similarity=0.289  Sum_probs=31.6

Q ss_pred             ceeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCH
Q 004972          305 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNS  338 (721)
Q Consensus       305 ~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~  338 (721)
                      +++|.|+|+ |.+|+.++..|++.|++|++.+|+.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   38 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRES   38 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCc
Confidence            568999997 9999999999999999999999974

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=92.31  E-value=0.05  Score=53.00  Aligned_cols=78  Identities=18%  Similarity=0.194  Sum_probs=49.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHH-CCCce-EEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc
Q 004972          306 RKVAVIGGGLMGSGIATAHIL-NNIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  382 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~-~G~~V-~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  382 (721)
                      .+|+|||+|.+|..++..+.. .|+++ -++|.+++.....            -.|          . .+...+++ +.+
T Consensus        81 ~rV~IIGaG~~G~~la~~~~~~~g~~iVg~~D~dp~k~g~~------------i~g----------v-~V~~~~dl~ell  137 (211)
T 2dt5_A           81 WGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRP------------VRG----------G-VIEHVDLLPQRV  137 (211)
T ss_dssp             EEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCE------------ETT----------E-EEEEGGGHHHHS
T ss_pred             CEEEEECccHHHHHHHHhHhhcCCcEEEEEEeCCHHHHhhh------------hcC----------C-eeecHHhHHHHH
Confidence            689999999999999985322 26654 5889888753221            001          0 12224445 223


Q ss_pred             C-CCCEEEEcccCChHHHHHHHHHHHh
Q 004972          383 K-DVDMVIEAVIESVPLKQKIFSELEK  408 (721)
Q Consensus       383 ~-~aDlVIeavpe~~~~k~~v~~~l~~  408 (721)
                      + ++|.||+|+|  ....+++...+..
T Consensus       138 ~~~ID~ViIA~P--s~~~~ei~~~l~~  162 (211)
T 2dt5_A          138 PGRIEIALLTVP--REAAQKAADLLVA  162 (211)
T ss_dssp             TTTCCEEEECSC--HHHHHHHHHHHHH
T ss_pred             HcCCCEEEEeCC--chhHHHHHHHHHH
Confidence            3 6899999999  5555566666544

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=92.27  E-value=0.15  Score=53.37  Aligned_cols=36  Identities=17%  Similarity=0.012  Sum_probs=33.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLL  342 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~  342 (721)
                      ++|.|+|.|..|..++..|.+.|+ |+++|++++.++
T Consensus       116 ~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~  151 (336)
T 1lnq_A          116 RHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKK  151 (336)
T ss_dssp             CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHH
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhh
Confidence            479999999999999999999999 999999999876

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=92.27  E-value=0.056  Score=59.85  Aligned_cols=35  Identities=29%  Similarity=0.383  Sum_probs=31.7

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHH
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  339 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~  339 (721)
                      |++|.|||+|.-|.+-|..|+++|++|++++.++.
T Consensus         1 Mk~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~   35 (501)
T 4dgk_A            1 MKPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDK   35 (501)
T ss_dssp             CCCEEEECCHHHHHHHHHHHHHTTCCEEEECCC--
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCC
Confidence            68999999999999999999999999999998754

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=92.22  E-value=0.15  Score=53.36  Aligned_cols=35  Identities=20%  Similarity=0.197  Sum_probs=31.8

Q ss_pred             ceeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHH
Q 004972          305 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSE  339 (721)
Q Consensus       305 ~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~  339 (721)
                      .++|.|.|+ |.+|+.++..|.+.|++|++++++..
T Consensus        25 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   60 (351)
T 3ruf_A           25 PKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFST   60 (351)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            468999996 99999999999999999999999654

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=92.21  E-value=0.098  Score=55.31  Aligned_cols=104  Identities=18%  Similarity=0.147  Sum_probs=56.5

Q ss_pred             eeEEEEc-CCCCcHHHHHHHHHCC-CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceec-cCcccc
Q 004972          306 RKVAVIG-GGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDYSEF  382 (721)
Q Consensus       306 ~kI~VIG-~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~l  382 (721)
                      .||+|+| .|.+|..+...|.++. ++|+.+..++....+.   +........ ...+....     ..+... .+.+.+
T Consensus         9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~---~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~   79 (354)
T 1ys4_A            9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKK---YKDACYWFQ-DRDIPENI-----KDMVVIPTDPKHE   79 (354)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSB---HHHHSCCCC-SSCCCHHH-----HTCBCEESCTTSG
T ss_pred             ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEccccccccc---HHHhccccc-ccccccCc-----eeeEEEeCCHHHH
Confidence            6899999 7999999999988764 5777664332211000   000000000 00011110     012111 234334


Q ss_pred             -C-CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCC
Q 004972          383 -K-DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI  423 (721)
Q Consensus       383 -~-~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~  423 (721)
                       + ++|+||+|+|  .....++...+.   ..++.++++++..
T Consensus        80 ~~~~~DvV~~atp--~~~~~~~a~~~~---~aG~~VId~s~~~  117 (354)
T 1ys4_A           80 EFEDVDIVFSALP--SDLAKKFEPEFA---KEGKLIFSNASAY  117 (354)
T ss_dssp             GGTTCCEEEECCC--HHHHHHHHHHHH---HTTCEEEECCSTT
T ss_pred             hcCCCCEEEECCC--chHHHHHHHHHH---HCCCEEEECCchh
Confidence             6 8999999998  555455554443   4567788887764

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=92.18  E-value=0.068  Score=56.69  Aligned_cols=33  Identities=30%  Similarity=0.353  Sum_probs=30.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHH
Q 004972          307 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  339 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~  339 (721)
                      -|.|||+|.-|.+.|..|+++|++|+++|+.++
T Consensus         6 DViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~   38 (397)
T 3oz2_A            6 DVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPE   38 (397)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            399999999999999999999999999998653

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=92.17  E-value=0.15  Score=54.00  Aligned_cols=99  Identities=18%  Similarity=0.244  Sum_probs=56.6

Q ss_pred             ceeEEEEc-CCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcccc
Q 004972          305 VRKVAVIG-GGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  382 (721)
Q Consensus       305 ~~kI~VIG-~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l  382 (721)
                      ..||+|+| .|.+|..+.+.|.+... +|+.+....+.-.+    +...... . .+..        ...+.... .+.+
T Consensus        16 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~----~~~~~~~-~-~~~v--------~~dl~~~~-~~~~   80 (359)
T 1xyg_A           16 DIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQS----MESVFPH-L-RAQK--------LPTLVSVK-DADF   80 (359)
T ss_dssp             CEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSC----HHHHCGG-G-TTSC--------CCCCBCGG-GCCG
T ss_pred             CcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCC----HHHhCch-h-cCcc--------cccceecc-hhHh
Confidence            35899999 79999999999988753 77766543321111    1110000 0 0100        00122222 2234


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCC
Q 004972          383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID  424 (721)
Q Consensus       383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~  424 (721)
                      .++|+||+|+|....  .+.   ...+ ..++.++++++...
T Consensus        81 ~~vDvVf~atp~~~s--~~~---a~~~-~aG~~VId~sa~~R  116 (359)
T 1xyg_A           81 STVDAVFCCLPHGTT--QEI---IKEL-PTALKIVDLSADFR  116 (359)
T ss_dssp             GGCSEEEECCCTTTH--HHH---HHTS-CTTCEEEECSSTTT
T ss_pred             cCCCEEEEcCCchhH--HHH---HHHH-hCCCEEEECCcccc
Confidence            689999999985443  222   2334 66788889888654

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=92.16  E-value=0.25  Score=51.98  Aligned_cols=35  Identities=20%  Similarity=0.288  Sum_probs=32.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY  340 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~  340 (721)
                      ++|+|+|.|.+|...|..+...|.+|+++|+++++
T Consensus       176 ktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~  210 (355)
T 1c1d_A          176 LTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTER  210 (355)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccH
Confidence            68999999999999999999999999999999764

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=92.12  E-value=0.19  Score=51.49  Aligned_cols=34  Identities=24%  Similarity=0.296  Sum_probs=31.4

Q ss_pred             ceeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCH
Q 004972          305 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNS  338 (721)
Q Consensus       305 ~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~  338 (721)
                      +++|.|+|+ |.+|+.++..|++.|++|++.+|+.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   38 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPE   38 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCC
Confidence            468999996 9999999999999999999999983

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=92.11  E-value=0.24  Score=52.09  Aligned_cols=70  Identities=13%  Similarity=0.111  Sum_probs=43.1

Q ss_pred             eeEEEEcCCCCcH-HHHHHHHHC-CCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccc-
Q 004972          306 RKVAVIGGGLMGS-GIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE-  381 (721)
Q Consensus       306 ~kI~VIG~G~mG~-~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-  381 (721)
                      .||+|||+|.||. ..+..+... +++|+ ++|++  ..+...+.        ..            ...+...++++. 
T Consensus         3 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~--~~~~~a~~--------~~------------~~~~~~~~~~~~l   60 (349)
T 3i23_A            3 VKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLH--VNEKAAAP--------FK------------EKGVNFTADLNEL   60 (349)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTT--CCHHHHHH--------HH------------TTTCEEESCTHHH
T ss_pred             eEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCC--HHHHHHHh--------hC------------CCCCeEECCHHHH
Confidence            5899999999998 455556544 67765 88887  21211100        00            012445566633 


Q ss_pred             cC--CCCEEEEcccCChH
Q 004972          382 FK--DVDMVIEAVIESVP  397 (721)
Q Consensus       382 l~--~aDlVIeavpe~~~  397 (721)
                      ++  +.|+|++|+|....
T Consensus        61 l~~~~~D~V~i~tp~~~h   78 (349)
T 3i23_A           61 LTDPEIELITICTPAHTH   78 (349)
T ss_dssp             HSCTTCCEEEECSCGGGH
T ss_pred             hcCCCCCEEEEeCCcHHH
Confidence            44  48999999995443

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=91.99  E-value=0.097  Score=49.10  Aligned_cols=33  Identities=24%  Similarity=0.278  Sum_probs=31.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  338 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~  338 (721)
                      .+|.|||+|..|..+|..|++.|.+|+++++++
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~   34 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGR   34 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            579999999999999999999999999999875

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=91.98  E-value=0.086  Score=56.50  Aligned_cols=35  Identities=23%  Similarity=0.281  Sum_probs=32.3

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHH
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  339 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~  339 (721)
                      ..+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus         5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   39 (397)
T 2vou_A            5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   39 (397)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            35899999999999999999999999999998754

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=91.95  E-value=0.039  Score=53.66  Aligned_cols=80  Identities=20%  Similarity=0.283  Sum_probs=50.6

Q ss_pred             ceeEEEEcCCCCcHHHHHHH--HHCCCce-EEEeCCHH-HHHH-HHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc
Q 004972          305 VRKVAVIGGGLMGSGIATAH--ILNNIYV-VLKEVNSE-YLLK-GIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  379 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~l--a~~G~~V-~l~d~~~~-~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  379 (721)
                      ..+|+|+|+|.+|..++..+  ...|+++ -++|.+++ .... .           + .| +          .+...+++
T Consensus        84 ~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~-----------i-~G-v----------pV~~~~dL  140 (212)
T 3keo_A           84 TTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTT-----------E-DG-I----------PVYGISTI  140 (212)
T ss_dssp             CEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBC-----------T-TC-C----------BEEEGGGH
T ss_pred             CCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCcee-----------E-CC-e----------EEeCHHHH
Confidence            46899999999999999873  3456664 48899887 5211 0           0 01 0          12223444


Q ss_pred             -ccc--CCCCEEEEcccCChHHHHHHHHHHHhh
Q 004972          380 -SEF--KDVDMVIEAVIESVPLKQKIFSELEKA  409 (721)
Q Consensus       380 -~~l--~~aDlVIeavpe~~~~k~~v~~~l~~~  409 (721)
                       +.+  .+.|.+|+|+|  ....+++...+.+.
T Consensus       141 ~~~v~~~~Id~vIIAvP--s~~aq~v~d~lv~~  171 (212)
T 3keo_A          141 NDHLIDSDIETAILTVP--STEAQEVADILVKA  171 (212)
T ss_dssp             HHHC-CCSCCEEEECSC--GGGHHHHHHHHHHH
T ss_pred             HHHHHHcCCCEEEEecC--chhHHHHHHHHHHc
Confidence             223  36899999999  44556666666543

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=91.90  E-value=0.1  Score=54.98  Aligned_cols=33  Identities=21%  Similarity=0.308  Sum_probs=30.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  338 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~  338 (721)
                      ..|.|||+|.+|.++|..|++.|++|+++|+..
T Consensus         7 ~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~   39 (363)
T 1c0p_A            7 KRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCEEEEEeccC
Confidence            479999999999999999999999999999753

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=91.88  E-value=0.32  Score=50.83  Aligned_cols=37  Identities=24%  Similarity=0.349  Sum_probs=27.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHC-CCceEEE-eC--CHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILN-NIYVVLK-EV--NSEYLL  342 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~-G~~V~l~-d~--~~~~~~  342 (721)
                      .||||+|+|.+|..+++.+..+ +.+|+.+ |+  +++.+.
T Consensus         4 ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a   44 (335)
T 1u8f_O            4 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMV   44 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHH
T ss_pred             eEEEEEccCHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHH
Confidence            5899999999999999998764 5777644 43  555443

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A

Probab=91.85  E-value=0.042  Score=62.19  Aligned_cols=33  Identities=21%  Similarity=0.452  Sum_probs=30.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  338 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~  338 (721)
                      .+|.|||+|..|+.++..|++.|. +++++|.+.
T Consensus        18 s~VlVVGaGGLGsevak~La~aGVG~ItlvD~D~   51 (640)
T 1y8q_B           18 GRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDT   51 (640)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEEECCB
T ss_pred             CeEEEECcCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence            589999999999999999999998 899999753

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=91.82  E-value=0.068  Score=55.97  Aligned_cols=34  Identities=21%  Similarity=0.363  Sum_probs=31.4

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHH---CCCceEEEeCCH
Q 004972          305 VRKVAVIGGGLMGSGIATAHIL---NNIYVVLKEVNS  338 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~---~G~~V~l~d~~~  338 (721)
                      |.+|.|||+|..|.+.|..|++   .|++|+++|++.
T Consensus         1 m~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~   37 (342)
T 3qj4_A            1 MAQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKAD   37 (342)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSS
T ss_pred             CCcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCC
Confidence            4689999999999999999999   999999999864

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=91.82  E-value=0.47  Score=49.96  Aligned_cols=104  Identities=25%  Similarity=0.324  Sum_probs=56.4

Q ss_pred             ceeEEEEc-CCCCcHHHHHHHHHCC-CceEEEe-CCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceecc-Ccc
Q 004972          305 VRKVAVIG-GGLMGSGIATAHILNN-IYVVLKE-VNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-DYS  380 (721)
Q Consensus       305 ~~kI~VIG-~G~mG~~iA~~la~~G-~~V~l~d-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~  380 (721)
                      +.||+|+| .|.+|..+...|.... .+|+.+. .+...-+.    +......+ ..+.+....     ..+.+.+ +.+
T Consensus         4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~----~~~~~~~~-~~~~~~~~~-----~~~~~~~~d~~   73 (350)
T 2ep5_A            4 KIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKK----YKDAVKWI-EQGDIPEEV-----QDLPIVSTNYE   73 (350)
T ss_dssp             CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSB----HHHHCCCC-SSSSCCHHH-----HTCBEECSSGG
T ss_pred             CcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCC----HHHhcCcc-cccccccCC-----ceeEEeeCCHH
Confidence            46899999 7999999999887653 4776664 22211110    00000000 001111100     1122221 334


Q ss_pred             ccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCC
Q 004972          381 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI  423 (721)
Q Consensus       381 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~  423 (721)
                      .+.++|+|++|+|  .....++...+   +..++.++++++..
T Consensus        74 ~~~~vDvVf~atp--~~~s~~~a~~~---~~aG~~VId~s~~~  111 (350)
T 2ep5_A           74 DHKDVDVVLSALP--NELAESIELEL---VKNGKIVVSNASPF  111 (350)
T ss_dssp             GGTTCSEEEECCC--HHHHHHHHHHH---HHTTCEEEECSSTT
T ss_pred             HhcCCCEEEECCC--hHHHHHHHHHH---HHCCCEEEECCccc
Confidence            4578999999998  44444554443   34566678887764

>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}

Probab=91.65  E-value=0.14  Score=53.36  Aligned_cols=37  Identities=16%  Similarity=0.102  Sum_probs=26.4

Q ss_pred             HcCCCHHHHHHHHHhcCCCccHHHHHHhhchHHHHHHH
Q 004972          507 SLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATS  544 (721)
Q Consensus       507 ~~Gv~~~~ID~a~~~~G~p~Gpf~~~D~~Gld~~~~~~  544 (721)
                      ++|.+.+++-+-....||.- |==..|.-|.|...++.
T Consensus       183 ~~g~~f~~~l~~Aq~~GyaE-~DP~~Dv~G~D~a~Kl~  219 (325)
T 3ing_A          183 ANGRSLRDVVDDAIKKGIAE-SNPQDDLNGLDAARKSV  219 (325)
T ss_dssp             HTTCCHHHHHHHHHHHTCSC-SSTHHHHTTHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHcCCCC-CCcccccCChhHHHHHH
Confidence            67888888777776667631 22257999999988753

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=91.57  E-value=0.28  Score=48.84  Aligned_cols=76  Identities=16%  Similarity=0.010  Sum_probs=50.2

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCce-EEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcc-cc
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-EF  382 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V-~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~l  382 (721)
                      -++|+++|+|.||..++..  . ++++ .+|+   ++   .              +.+          .+..++|++ .+
T Consensus        12 ~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~---~k---~--------------gel----------gv~a~~d~d~ll   58 (253)
T 1j5p_A           12 HMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD---RI---S--------------KDI----------PGVVRLDEFQVP   58 (253)
T ss_dssp             CCEEEEECCSHHHHHHHHH--S-CCSEEEEEC---SS---C--------------CCC----------SSSEECSSCCCC
T ss_pred             cceEEEECcCHHHHHHHhc--C-CcEEEEEEe---cc---c--------------ccc----------CceeeCCHHHHh
Confidence            3589999999999999998  4 8876 4666   21   0              101          234566674 45


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEe
Q 004972          383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT  418 (721)
Q Consensus       383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s  418 (721)
                      +++|+||||.+  .+...+   .+.+.+..+.=+++
T Consensus        59 a~pD~VVe~A~--~~av~e---~~~~iL~aG~dvv~   89 (253)
T 1j5p_A           59 SDVSTVVECAS--PEAVKE---YSLQILKNPVNYII   89 (253)
T ss_dssp             TTCCEEEECSC--HHHHHH---HHHHHTTSSSEEEE
T ss_pred             hCCCEEEECCC--HHHHHH---HHHHHHHCCCCEEE
Confidence            79999999986  443333   35566777654444

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=91.53  E-value=0.52  Score=48.25  Aligned_cols=35  Identities=20%  Similarity=0.271  Sum_probs=31.4

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHH
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEY  340 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~  340 (721)
                      ++|.|.|+ |.+|+.++..|++.|++|++.+++++.
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~   38 (311)
T 3m2p_A            3 LKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGN   38 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC-
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCc
Confidence            68999995 999999999999999999999998443

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=91.49  E-value=0.54  Score=49.30  Aligned_cols=152  Identities=13%  Similarity=0.131  Sum_probs=75.8

Q ss_pred             CceeEEEEcCCCCcHHHHHHHHHC-CCceEEEeC---CHHHHHHHHHHHHHHHHhhhhcCCCCHHH--HHHhh----cCc
Q 004972          304 GVRKVAVIGGGLMGSGIATAHILN-NIYVVLKEV---NSEYLLKGIKTIEANVRGLVTRGKLTQDK--ANNAL----KML  373 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~~la~~-G~~V~l~d~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~----~~i  373 (721)
                      .+.||+|+|+|.+|..+.+.+.++ .++|+.++-   +.+.+...       +...-..|.+...-  .+..+    ..+
T Consensus        16 ~~ikVgI~G~G~iGr~llR~l~~~p~veivaindp~~~~~~~a~l-------l~~ds~hg~~~~~v~~~~~~l~v~g~~i   88 (354)
T 3cps_A           16 FQGTLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYL-------LKYDSVHGNFNGTVEVSGKDLCINGKVV   88 (354)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHTCSSCEEEEEECTTSCHHHHHHH-------HHCCTTTCSCSSCEEECC-CEEETTEEE
T ss_pred             cceEEEEECCCHHHHHHHHHHHcCCCeEEEEecCCCCChhHhhhh-------hcccccCCCCCCcEEEeCCEEEECCeEE
Confidence            356999999999999999999876 577776553   22222111       11111112211000  00000    112


Q ss_pred             eecc--Ccccc----CCCCEEEEcccCChHHHHHHHHHHHhhCCCCe--EEEecCCCCCHHHHhcccCCCCcEEEecCCC
Q 004972          374 KGVL--DYSEF----KDVDMVIEAVIESVPLKQKIFSELEKACPPHC--ILATNTSTIDLNIVGEKTSSQDRIIGAHFFS  445 (721)
Q Consensus       374 ~~~~--~~~~l----~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~--ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~  445 (721)
                      ....  +.+.+    .++|+||+|.|-...  .+   ....++..++  +|+|+++.-.         .|.-+.|   .|
T Consensus        89 ~v~~~~dp~~i~w~~~~vDvV~eatg~~~s--~e---~a~~~l~~GakkvVId~padd~---------~p~~V~G---VN  151 (354)
T 3cps_A           89 KVFQAKDPAEIPWGASGAQIVCESTGVFTT--EE---KASLHLKGGAKKVIISAPPKDN---------VPMYVMG---VN  151 (354)
T ss_dssp             EEECCSCGGGCCHHHHTCCEEEECSSSCCS--HH---HHGGGGTTTCSEEEESSCCSSC---------CCBCCTT---TT
T ss_pred             EEEecCChHHCCcccCCCCEEEECCCchhh--HH---HHHHHHHcCCcEEEEeCCCCCC---------CCEEEec---cC
Confidence            2221  33433    579999999984333  22   2345566677  8888776310         0101111   12


Q ss_pred             CCCCCCe-eEEecCCCCCHHH-HHHHHHHHHHcCCe
Q 004972          446 PAHVMPL-LEIVRTERTSAQV-ILDLMTVGKIIKKV  479 (721)
Q Consensus       446 p~~~~~l-vEiv~~~~t~~e~-~~~~~~l~~~lG~~  479 (721)
                      +..+.+. ..||..+++.... .-.++++.+..|-.
T Consensus       152 ~~~~~~~~~~IISNpsCtTn~lap~lkpL~~~~gI~  187 (354)
T 3cps_A          152 NTEYDPSKFNVISNASCTTNCLAPLAKIINDKFGIV  187 (354)
T ss_dssp             GGGCCTTTCSEEECCCHHHHHHHHHHHHHHHHTCEE
T ss_pred             HHHhCcCCCcEEECCCcHHHHHHHHHHHHHHhCCee
Confidence            1111111 2377777765554 44566666777743

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=91.25  E-value=0.12  Score=52.98  Aligned_cols=92  Identities=20%  Similarity=0.051  Sum_probs=60.0

Q ss_pred             ceeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccc-c
Q 004972          305 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE-F  382 (721)
Q Consensus       305 ~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-l  382 (721)
                      ..||+|+|+ |.||..++..+.+.|++ .++.+++...                 +.        ....+....++++ .
T Consensus         7 ~~~VaVvGasG~~G~~~~~~l~~~g~~-~v~~VnP~~~-----------------g~--------~i~G~~vy~sl~el~   60 (288)
T 1oi7_A            7 ETRVLVQGITGREGQFHTKQMLTYGTK-IVAGVTPGKG-----------------GM--------EVLGVPVYDTVKEAV   60 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCT-----------------TC--------EETTEEEESSHHHHH
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHcCCe-EEEEECCCCC-----------------Cc--------eECCEEeeCCHHHHh
Confidence            468999998 99999999999888998 4456555420                 00        0012444555533 3


Q ss_pred             C--CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH
Q 004972          383 K--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN  426 (721)
Q Consensus       383 ~--~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~  426 (721)
                      +  ++|++|+++|  .+...+++.+..+. .-..++ ..|++++..
T Consensus        61 ~~~~~Dv~Ii~vp--~~~~~~~~~ea~~~-Gi~~vV-i~t~G~~~~  102 (288)
T 1oi7_A           61 AHHEVDASIIFVP--APAAADAALEAAHA-GIPLIV-LITEGIPTL  102 (288)
T ss_dssp             HHSCCSEEEECCC--HHHHHHHHHHHHHT-TCSEEE-ECCSCCCHH
T ss_pred             hcCCCCEEEEecC--HHHHHHHHHHHHHC-CCCEEE-EECCCCCHH
Confidence            4  7999999999  77777777776553 223333 345666654

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=91.15  E-value=0.12  Score=54.38  Aligned_cols=101  Identities=16%  Similarity=0.100  Sum_probs=57.3

Q ss_pred             CCceeEEEEc-CCCCcHHHHHHHHHCC-----C-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCcee
Q 004972          303 RGVRKVAVIG-GGLMGSGIATAHILNN-----I-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG  375 (721)
Q Consensus       303 ~~~~kI~VIG-~G~mG~~iA~~la~~G-----~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  375 (721)
                      |.|+||+|+| .|.+|..+...|.+++     . +|+.+......-+.        +...  .+.+..      ...+..
T Consensus         7 M~m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~--------~~~~--~~~l~~------~~~~~~   70 (352)
T 2nqt_A            7 ANATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGST--------LGEH--HPHLTP------LAHRVV   70 (352)
T ss_dssp             CSCEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSB--------GGGT--CTTCGG------GTTCBC
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCc--------hhhh--cccccc------cceeee
Confidence            3457999999 7999999999999887     3 66666432110000        0000  000000      001111


Q ss_pred             c-cCccccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH
Q 004972          376 V-LDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL  425 (721)
Q Consensus       376 ~-~~~~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i  425 (721)
                      . .+.+.+.++|+||.|+|....  +++...   + ..++.++++++....
T Consensus        71 ~~~~~~~~~~~DvVf~alg~~~s--~~~~~~---~-~~G~~vIDlSa~~R~  115 (352)
T 2nqt_A           71 EPTEAAVLGGHDAVFLALPHGHS--AVLAQQ---L-SPETLIIDCGADFRL  115 (352)
T ss_dssp             EECCHHHHTTCSEEEECCTTSCC--HHHHHH---S-CTTSEEEECSSTTTC
T ss_pred             ccCCHHHhcCCCEEEECCCCcch--HHHHHH---H-hCCCEEEEECCCccC
Confidence            1 123445689999999995432  333333   2 457888888887653

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=91.15  E-value=0.22  Score=50.37  Aligned_cols=37  Identities=19%  Similarity=0.182  Sum_probs=32.7

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHC--CCceEEEeCCHHHHH
Q 004972          306 RKVAVIGG-GLMGSGIATAHILN--NIYVVLKEVNSEYLL  342 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~--G~~V~l~d~~~~~~~  342 (721)
                      ++|.|.|+ |.+|+.++..|++.  |++|++.+++++..+
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~   40 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKAS   40 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTH
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHh
Confidence            46899997 99999999999998  999999999876543

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*

Probab=91.11  E-value=0.77  Score=47.92  Aligned_cols=30  Identities=23%  Similarity=0.256  Sum_probs=24.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCC---CceEEEe
Q 004972          306 RKVAVIGGGLMGSGIATAHILNN---IYVVLKE  335 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G---~~V~l~d  335 (721)
                      .||||+|+|.+|..+.+.+..++   ++|+.++
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~~~evvaIn   35 (339)
T 3b1j_A            3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAIN   35 (339)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSCCSEEEEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence            48999999999999999998863   5666544

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=91.07  E-value=0.7  Score=45.99  Aligned_cols=37  Identities=19%  Similarity=0.227  Sum_probs=31.3

Q ss_pred             eEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHH
Q 004972          307 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLK  343 (721)
Q Consensus       307 kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~  343 (721)
                      +|-|-|+ +-+|.++|..|++.|.+|++.|++++.++.
T Consensus         4 ~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~   41 (247)
T 3ged_A            4 GVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSAD   41 (247)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             EEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            4556675 779999999999999999999999887654

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=91.07  E-value=1.2  Score=44.42  Aligned_cols=41  Identities=32%  Similarity=0.364  Sum_probs=33.7

Q ss_pred             eEE-EEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHH
Q 004972          307 KVA-VIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT  347 (721)
Q Consensus       307 kI~-VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~  347 (721)
                      |++ |-|+ +-+|.++|..|++.|..|+++|++++.++...+.
T Consensus         8 KvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~   50 (254)
T 4fn4_A            8 KVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQE   50 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHH
Confidence            455 5565 6689999999999999999999999988776543

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=91.04  E-value=0.85  Score=49.89  Aligned_cols=93  Identities=23%  Similarity=0.279  Sum_probs=59.5

Q ss_pred             CceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc----
Q 004972          304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----  379 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~----  379 (721)
                      +.++|.|+|+|.+|..+|..|. .+++|.+++.++++++.+.+.+.+   ..+=.|-               .+|.    
T Consensus       234 ~~~~v~I~GgG~ig~~lA~~L~-~~~~v~iIE~d~~r~~~la~~l~~---~~Vi~GD---------------~td~~~L~  294 (461)
T 4g65_A          234 PYRRIMIVGGGNIGASLAKRLE-QTYSVKLIERNLQRAEKLSEELEN---TIVFCGD---------------AADQELLT  294 (461)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHT-TTSEEEEEESCHHHHHHHHHHCTT---SEEEESC---------------TTCHHHHH
T ss_pred             cccEEEEEcchHHHHHHHHHhh-hcCceEEEecCHHHHHHHHHHCCC---ceEEecc---------------ccchhhHh
Confidence            3578999999999999999874 569999999999998776432110   0011111               1121    


Q ss_pred             -cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEE
Q 004972          380 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA  417 (721)
Q Consensus       380 -~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~  417 (721)
                       +.+.++|++|-+...|.  ..-+...+++.+....+++
T Consensus       295 ee~i~~~D~~ia~T~~De--~Ni~~~llAk~~gv~kvIa  331 (461)
T 4g65_A          295 EENIDQVDVFIALTNEDE--TNIMSAMLAKRMGAKKVMV  331 (461)
T ss_dssp             HTTGGGCSEEEECCSCHH--HHHHHHHHHHHTTCSEEEE
T ss_pred             hcCchhhcEEEEcccCcH--HHHHHHHHHHHcCCccccc
Confidence             45789999997776432  2233344555555555554

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=90.99  E-value=0.12  Score=57.82  Aligned_cols=35  Identities=20%  Similarity=0.377  Sum_probs=32.0

Q ss_pred             CceeEEEEcCCCCcHHHHHHHHH---CCCceEEEeCCH
Q 004972          304 GVRKVAVIGGGLMGSGIATAHIL---NNIYVVLKEVNS  338 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~~la~---~G~~V~l~d~~~  338 (721)
                      ++.+|.|||+|..|.+.|..|++   .|++|+++|+.+
T Consensus         4 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~   41 (538)
T 2aqj_A            4 PIKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAA   41 (538)
T ss_dssp             BCCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence            45689999999999999999999   999999999853

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=90.96  E-value=0.59  Score=49.34  Aligned_cols=142  Identities=15%  Similarity=0.097  Sum_probs=76.0

Q ss_pred             eeEEEEc-CCCCcHHHHHHHHHCCC---ceEEEeCCHHHHHHHHHHHHHHHHhhhh-cCCCCHHHHHHhhcCceec-cCc
Q 004972          306 RKVAVIG-GGLMGSGIATAHILNNI---YVVLKEVNSEYLLKGIKTIEANVRGLVT-RGKLTQDKANNALKMLKGV-LDY  379 (721)
Q Consensus       306 ~kI~VIG-~G~mG~~iA~~la~~G~---~V~l~d~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~i~~~-~~~  379 (721)
                      .||+||| .|+.|.-+...|.+.++   ++.++...... .+           .+. .+           ..+.+. .+.
T Consensus         3 ~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~sa-G~-----------~~~~~~-----------~~~~~~~~~~   59 (366)
T 3pwk_A            3 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSA-GK-----------SLKFKD-----------QDITIEETTE   59 (366)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTT-TC-----------EEEETT-----------EEEEEEECCT
T ss_pred             cEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccC-CC-----------cceecC-----------CCceEeeCCH
Confidence            4899999 59999999999999876   34444432111 00           000 00           011211 123


Q ss_pred             cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCC
Q 004972          380 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTE  459 (721)
Q Consensus       380 ~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~  459 (721)
                      +.++++|+||+|.|  ....++....+   +..++.++++++......-   .  |   .++.-.|+..+..---+|.++
T Consensus        60 ~~~~~~Dvvf~a~~--~~~s~~~a~~~---~~~G~~vIDlSa~~R~~~~---~--p---~~vpevN~~~i~~~~~iIanp  126 (366)
T 3pwk_A           60 TAFEGVDIALFSAG--SSTSAKYAPYA---VKAGVVVVDNTSYFRQNPD---V--P---LVVPEVNAHALDAHNGIIACP  126 (366)
T ss_dssp             TTTTTCSEEEECSC--HHHHHHHHHHH---HHTTCEEEECSSTTTTCTT---S--C---BCCHHHHGGGGTTCCSEEECC
T ss_pred             HHhcCCCEEEECCC--hHhHHHHHHHH---HHCCCEEEEcCCccccCCC---c--e---EEEccCCHHHHcCCCCeEECC
Confidence            45789999999998  55555555554   3467788888886533210   0  0   011111111111101255555


Q ss_pred             CCCH-HHHHHHHHHHHHcCCeeEEE
Q 004972          460 RTSA-QVILDLMTVGKIIKKVPVVV  483 (721)
Q Consensus       460 ~t~~-e~~~~~~~l~~~lG~~~v~v  483 (721)
                      ++.+ ..+-.+.++.+..+-..+++
T Consensus       127 gC~tt~~~l~l~pL~~~~~i~~i~v  151 (366)
T 3pwk_A          127 NCSTIQMMVALEPVRQKWGLDRIIV  151 (366)
T ss_dssp             CHHHHHHHHHHHHHHHHHCCSEEEE
T ss_pred             CcHHHHHHHHHHHHHHhCCCcEEEE
Confidence            5544 34556677777777544444

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=90.94  E-value=0.11  Score=58.70  Aligned_cols=98  Identities=14%  Similarity=0.150  Sum_probs=0.0

Q ss_pred             CCCCCCCceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceecc
Q 004972          298 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL  377 (721)
Q Consensus       298 ~~~~~~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  377 (721)
                      ++..... ++|.|+|.|.+|..+|..|.+.|++|+++|.+++.++...        ..+.....+.+...+         
T Consensus       342 ~~~~~~~-~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~--------~~i~gD~t~~~~L~~---------  403 (565)
T 4gx0_A          342 IGEAPED-ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCNDH--------VVVYGDATVGQTLRQ---------  403 (565)
T ss_dssp             -----CC-CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSS--------CEEESCSSSSTHHHH---------
T ss_pred             hcCCCCC-CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhhcC--------CEEEeCCCCHHHHHh---------


Q ss_pred             CccccCCCCEEEEcccCChHHHHHHHHHHHhhCCCC-eEEE
Q 004972          378 DYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPH-CILA  417 (721)
Q Consensus       378 ~~~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~-~ii~  417 (721)
                        ..+++||.||.++++|  ...-+...+.+.+.++ .+++
T Consensus       404 --agi~~ad~vi~~~~~d--~~ni~~~~~ak~l~~~~~iia  440 (565)
T 4gx0_A          404 --AGIDRASGIIVTTNDD--STNIFLTLACRHLHSHIRIVA  440 (565)
T ss_dssp             --HTTTSCSEEEECCSCH--HHHHHHHHHHHHHCSSSEEEE
T ss_pred             --cCccccCEEEEECCCc--hHHHHHHHHHHHHCCCCEEEE

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=90.91  E-value=0.49  Score=49.46  Aligned_cols=144  Identities=13%  Similarity=0.111  Sum_probs=77.7

Q ss_pred             ceeEEEEc-CCCCcHHHHHHHHHCC---CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceec-cCc
Q 004972          305 VRKVAVIG-GGLMGSGIATAHILNN---IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY  379 (721)
Q Consensus       305 ~~kI~VIG-~G~mG~~iA~~la~~G---~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~  379 (721)
                      +.||+|+| .|.+|..+...|.+++   ++|+.+...... .+           .+.   +.     .  ..+... .+.
T Consensus         3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~-G~-----------~~~---~~-----~--~~i~~~~~~~   60 (336)
T 2r00_A            3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSE-GK-----------TYR---FN-----G--KTVRVQNVEE   60 (336)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTT-TC-----------EEE---ET-----T--EEEEEEEGGG
T ss_pred             ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCC-CC-----------cee---ec-----C--ceeEEecCCh
Confidence            46899999 8999999999998874   466665521110 00           000   00     0  012221 122


Q ss_pred             cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCC--eeEEec
Q 004972          380 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMP--LLEIVR  457 (721)
Q Consensus       380 ~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~--lvEiv~  457 (721)
                      +.+.++|+||+|+|  .....+....+   +..++.++++++......  .      -..++.-.|+..+..  ...+|.
T Consensus        61 ~~~~~vDvVf~a~g--~~~s~~~a~~~---~~~G~~vId~s~~~R~~~--~------~~~~vpevN~~~i~~~~~~~iIa  127 (336)
T 2r00_A           61 FDWSQVHIALFSAG--GELSAKWAPIA---AEAGVVVIDNTSHFRYDY--D------IPLVVPEVNPEAIAEFRNRNIIA  127 (336)
T ss_dssp             CCGGGCSEEEECSC--HHHHHHHHHHH---HHTTCEEEECSSTTTTCT--T------SCBCCTTTCGGGGGGGGGTTEEE
T ss_pred             HHhcCCCEEEECCC--chHHHHHHHHH---HHcCCEEEEcCCccccCC--C------CCeEeccCCHHHhccccCCcEEE
Confidence            34578999999998  44444554443   345778888887654321  0      001111122221111  022666


Q ss_pred             CCCCCHH-HHHHHHHHHHHcCCeeEEE
Q 004972          458 TERTSAQ-VILDLMTVGKIIKKVPVVV  483 (721)
Q Consensus       458 ~~~t~~e-~~~~~~~l~~~lG~~~v~v  483 (721)
                      .+++... .+-.+.++.+..|-..+++
T Consensus       128 np~C~tt~~~~~l~pL~~~~~i~~~~v  154 (336)
T 2r00_A          128 NPNCSTIQMLVALKPIYDAVGIERINV  154 (336)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHCEEEEEE
T ss_pred             CCChHHHHHHHHHHHHHHhCCccEEEE
Confidence            6665444 4556777778777554444

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=90.83  E-value=0.11  Score=55.78  Aligned_cols=33  Identities=27%  Similarity=0.247  Sum_probs=31.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  338 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~  338 (721)
                      .+|.|||+|..|.+.|..|++.|++|+++|+++
T Consensus         6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~   38 (421)
T 3nix_A            6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQK   38 (421)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            579999999999999999999999999999874

>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*

Probab=90.74  E-value=0.26  Score=52.25  Aligned_cols=96  Identities=17%  Similarity=0.278  Sum_probs=55.8

Q ss_pred             ceeEEEEc-CCCCcHHHHH-HHHHCCC---ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc
Q 004972          305 VRKVAVIG-GGLMGSGIAT-AHILNNI---YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  379 (721)
Q Consensus       305 ~~kI~VIG-~G~mG~~iA~-~la~~G~---~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  379 (721)
                      |.||+|+| .|.+|..+.. .+.+.++   +++++..+ .. -+   .+    . .+. |. .        -.+....+.
T Consensus         1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~-s~-G~---~v----~-~~~-g~-~--------i~~~~~~~~   60 (367)
T 1t4b_A            1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTS-QL-GQ---AA----P-SFG-GT-T--------GTLQDAFDL   60 (367)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESS-ST-TS---BC----C-GGG-TC-C--------CBCEETTCH
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeC-CC-CC---Cc----c-ccC-CC-c--------eEEEecCCh
Confidence            35899999 7999999999 6666655   34444443 11 00   00    0 000 10 0        011112223


Q ss_pred             cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCe--EEEecCCCCCH
Q 004972          380 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHC--ILATNTSTIDL  425 (721)
Q Consensus       380 ~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~--ii~s~ts~~~i  425 (721)
                      +.++++|+||+|.|  ....+++...+.+   .++  +++++++...+
T Consensus        61 ~~~~~~DvVf~a~g--~~~s~~~a~~~~~---~G~k~vVID~ss~~R~  103 (367)
T 1t4b_A           61 EALKALDIIVTCQG--GDYTNEIYPKLRE---SGWQGYWIDAASSLRM  103 (367)
T ss_dssp             HHHHTCSEEEECSC--HHHHHHHHHHHHH---TTCCCEEEECSSTTTT
T ss_pred             HHhcCCCEEEECCC--chhHHHHHHHHHH---CCCCEEEEcCChhhcc
Confidence            34578999999998  6666666665543   343  88898887543

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=90.73  E-value=0.11  Score=56.55  Aligned_cols=33  Identities=12%  Similarity=0.284  Sum_probs=31.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  338 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~  338 (721)
                      ++|.|||+|..|...|..|++.|++|+++|+.+
T Consensus        23 ~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           23 KRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            579999999999999999999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	721
d1mj3a_	260	c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat	4e-37
d1wdka4	310	c.14.1.3 (A:1-310) Fatty oxidation complex alpha s	8e-35
d1wdka3	186	c.2.1.6 (A:311-496) Fatty oxidation complex alpha	2e-33
d1f0ya2	192	c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA	9e-30
d1wdka2	95	a.100.1.3 (A:621-715) Fatty oxidation complex alph	4e-21
d1wdka1	124	a.100.1.3 (A:497-620) Fatty oxidation complex alph	7e-21
d1uiya_	253	c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {The	5e-20
d1dcia_	275	c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2	2e-16
d1q52a_	297	c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacter	8e-14
d1hzda_	266	c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [T	8e-13
d1f0ya1	99	a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl	7e-12
d1f0ya1	99	a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl	0.001
d1nzya_	269	c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Ps	2e-11
d1pjha_	266	c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2	5e-11
d2f6qa1	245	c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-C	7e-11
d2b0ja2	242	c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopt	2e-09
d1ef8a_	261	c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Esc	2e-08
d1wz8a1	263	c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TT	2e-08
d1sg4a1	249	c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-d	8e-08
d2fw2a1	258	c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Hum	2e-05
d2a7ka1	230	c.14.1.3 (A:1-230) Carbapenem biosynthes protein C	2e-05
d1szoa_	249	c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus	3e-04

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 260

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  137 bits (346), Expect = 4e-37
 Identities = 67/173 (38%), Positives = 84/173 (48%), Gaps = 8/173 (4%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
           N  V +I L  P   NAL   ++  L    E       V AIVLTG    F+ G DI   
Sbjct: 14  NSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEM 73

Query: 71  QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
           Q        S           + I   KKP++AAV G ALGGG ELAM C    A  K Q
Sbjct: 74  QNRTFQDCYSGK----FLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQ 129

Query: 131 LGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 180
            G PE+ LG IP   GTQRL R VG S A+EM+L    I++++  + GL+  +
Sbjct: 130 FGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKI 182

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 310

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

 Score =  132 bits (332), Expect = 8e-35
 Identities = 72/301 (23%), Positives = 126/301 (41%), Gaps = 9/301 (2%)

Query: 6   VTMEVGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
           +T+     G+  +        VN      +  L+   +   +   VK ++++     F  
Sbjct: 8   ITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIV 67

Query: 64  GFDINVFQKVHGAGDVSLMPDVSVEL-VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHA 122
           G DI  F +     D  L+        + +  ED   P VAA+ G+ALGGGLE+ +    
Sbjct: 68  GADITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADF 127

Query: 123 RIAAPKTQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDA 179
           R+ A   ++GLPE+ LG+ P   GT RLPRL+G+  A+E +   K   +E+  K+  +DA
Sbjct: 128 RVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRAEDALKVSAVDA 187

Query: 180 VVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQA---KKTAP 236
           VVT+++L   +        +    +        +   L+   +++     +     +  P
Sbjct: 188 VVTADKLGAAALDLIKRAISGELDYKAKRQPKLEKLKLNAIEQMMAFETAKGFVAGQAGP 247

Query: 237 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVT 296
           N P     +  I++    G    +  EA  F +L     S  L+ +F   +   K   V 
Sbjct: 248 NYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSASNCLIGLFLNDQELKKKAKVY 307

Query: 297 D 297
           D
Sbjct: 308 D 308

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} Length = 186

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

 Score =  124 bits (312), Expect = 2e-33
 Identities = 60/184 (32%), Positives = 109/184 (59%)

Query: 303 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT 362
           + V++ AV+G G+MG GIA         +++K++N   + +G+      + G V +G++T
Sbjct: 2   KDVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMT 61

Query: 363 QDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 422
             K    L  ++  L Y +F +VD+V+EAV+E+  +KQ + +E+E       ILA+NTST
Sbjct: 62  PAKMAEVLNGIRPTLSYGDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTST 121

Query: 423 IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVV 482
           I ++++ +     +  +G HFF+P H+MPL+E++R E++S   +   +   K + K P+V
Sbjct: 122 ISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSDLAVATTVAYAKKMGKNPIV 181

Query: 483 VGNC 486
           V +C
Sbjct: 182 VNDC 185

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (286), Expect = 9e-30
 Identities = 60/188 (31%), Positives = 96/188 (51%), Gaps = 6/188 (3%)

Query: 305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL--- 361
           V+ V VIGGGLMG+GIA         VVL +   + L K  K IE ++R +  +      
Sbjct: 4   VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 63

Query: 362 --TQDKANNALKMLKGVLDYSE-FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 418
               +     L  +    D +      D+V+EA++E++ +K ++F  L+K    H I A+
Sbjct: 64  KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 123

Query: 419 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKK 478
           NTS++ +  +   T+ QDR  G HFF+P  VM L+E+++T  TS +    L+   K + K
Sbjct: 124 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 183

Query: 479 VPVVVGNC 486
            PV   + 
Sbjct: 184 HPVSCKDT 191

>d1wdka2 a.100.1.3 (A:621-715) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 95

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Fatty oxidation complex alpha subunit, C-terminal domain
species: Pseudomonas fragi [TaxId: 296]

 Score = 86.0 bits (213), Expect = 4e-21
 Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 615 VTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGAN 674
           VT+++I+  ++ P+  E+ R LE+GIV  A++ D   V G+ FP +RGG + + D++G  
Sbjct: 2   VTDEDIINWMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVA 61

Query: 675 YVYTSLKKWSQLYGNFFKPSRFLEERATKG 704
                  ++++  G  + P+  L E A  G
Sbjct: 62  EFVALADQYAE-LGALYHPTAKLREMAKNG 90

>d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 124

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Fatty oxidation complex alpha subunit, C-terminal domain
species: Pseudomonas fragi [TaxId: 296]

 Score = 86.8 bits (214), Expect = 7e-21
 Identities = 50/124 (40%), Positives = 60/124 (48%), Gaps = 10/124 (8%)

Query: 488 GFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEF 547
           GF VNR  FPY      LVS GVD  RID  +  FG P+GP  L+D+ G           
Sbjct: 1   GFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVM 60

Query: 548 DKAFPDRSFQSP--LVDLLLKSGRNGKANGKGLYTYEKGSKPKP----DPSVL----PII 597
            + FPDR        +D L ++ R G+ NGKG Y YE   K K     D SVL    PI+
Sbjct: 61  AEGFPDRMKDDRRSAIDALYEAKRLGQKNGKGFYAYEADKKGKQKKLVDSSVLEVLKPIV 120

Query: 598 EECR 601
            E R
Sbjct: 121 YEQR 124

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} Length = 253

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

 Score = 87.8 bits (216), Expect = 5e-20
 Identities = 56/228 (24%), Positives = 101/228 (44%), Gaps = 6/228 (2%)

Query: 6   VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
           V +E G+  VA++ L +P   N L+  +   L    ++  +   V+A+VLTG G  FS G
Sbjct: 2   VQVEKGH--VAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAG 59

Query: 65  FDINVFQKVHGAGDVSLMPDVSVEL-VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHAR 123
            D+   ++V   G           + + + +    KP VAAV G A+ GG  LA+ C   
Sbjct: 60  ADLAFLERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLV 119

Query: 124 IAAPKTQLGLPELTL--GVIPGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVV 181
           +   + +LG  E+ +       +  L R VG   A +++L  + + + E   LGL++ + 
Sbjct: 120 VMDEEARLGYTEVKIGFVAALVSVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRIA 179

Query: 182 TSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARL 229
              + L+ ++  A ++A      +R               +  +LA L
Sbjct: 180 PPGKALEEAKALAEEVAKNAPTSLRLTKELLLALPGMGLEDGFRLAAL 227

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 275

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 77.9 bits (190), Expect = 2e-16
 Identities = 32/141 (22%), Positives = 56/141 (39%), Gaps = 10/141 (7%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
              V  + L  P   NA+       L + F++ +   D +A+V++G G  F+ G D+   
Sbjct: 11  QKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDM 70

Query: 71  ---------QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
                      V              +    +IE C KP++AA+ G  +GGG++L   C 
Sbjct: 71  ASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACD 130

Query: 122 ARIAAPKTQLGLPELTLGVIP 142
            R         + E+ +G+  
Sbjct: 131 IRYCTQDAFFQVKEVDVGLAA 151

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 297

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 70.5 bits (171), Expect = 8e-14
 Identities = 30/127 (23%), Positives = 39/127 (30%), Gaps = 17/127 (13%)

Query: 12  NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
           +D    +    P V NA     V  L    + A    DV  ++LTGNG     G      
Sbjct: 27  DDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCS 86

Query: 71  QKVHGAGDVSLMPDVSVEL----------------VVNLIEDCKKPIVAAVEGLALGGGL 114
                    S     S +                 V  LI    K ++  V G A GGG 
Sbjct: 87  GGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGH 146

Query: 115 ELAMGCH 121
            L + C 
Sbjct: 147 SLHVVCD 153

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.1 bits (162), Expect = 8e-13
 Identities = 60/211 (28%), Positives = 100/211 (47%), Gaps = 5/211 (2%)

Query: 8   MEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFD 66
           +E  N G+ ++ +      N+L+  ++  L    +   S   V+ I++            
Sbjct: 9   LEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGA 68

Query: 67  INVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA 126
               +    + +V       +  V+N I +   P +AA++GLALGGGLELA+ C  R+AA
Sbjct: 69  DLKERAKMSSSEVGPFVSK-IRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAA 127

Query: 127 PKTQLGLPELTLGVIPGT---QRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 183
              ++GL E  L +IPG    QRLPR +G+S A E++  ++ +  +E   +GLI  V+  
Sbjct: 128 SSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQ 187

Query: 184 EELLKVSRLWALDIAARRKPWIRSLHRTDKL 214
            +    +   ALD+A    P      R  KL
Sbjct: 188 NQEGDAAYRKALDLAREFLPQGPVAMRVAKL 218

>d1f0ya1 a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (145), Expect = 7e-12
 Identities = 28/99 (28%), Positives = 39/99 (39%), Gaps = 4/99 (4%)

Query: 488 GFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFG--LPIGPFQLLDLAGYGVAAATSK 545
           GF VNR   PY   A  L   G             G   P+GPF+LLD  G         
Sbjct: 1   GFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVD 60

Query: 546 EFDKAFPD--RSFQSPLVDLLLKSGRNGKANGKGLYTYE 582
            + +   +      SP ++ L+   + GK  G+G Y Y+
Sbjct: 61  GWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 99

>d1f0ya1 a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 0.001
 Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 620 IVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTS 679
           IV  +L P + E+ R+ E G      D+D A  LG  +P    G     D VG +     
Sbjct: 3   IVNRLLVPYLMEAIRLYERG-DASKEDIDTAMKLGAGYPM---GPFELLDYVGLDTTKFI 58

Query: 680 LKKWSQLYGN--FFKPSRFLEERATKG 704
           +  W ++       +PS  L +   + 
Sbjct: 59  VDGWHEMDAENPLHQPSPSLNKLVAEN 85

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]} Length = 269

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

 Score = 63.3 bits (152), Expect = 2e-11
 Identities = 56/230 (24%), Positives = 97/230 (42%), Gaps = 8/230 (3%)

Query: 6   VTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
           +   V  DGVA IT+  P   NAL++  +  + D    A   D V A+++TG    F  G
Sbjct: 5   IGHRV-EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAG 63

Query: 65  FDINVFQKVHGAGDVSLMPDVSVEL---VVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
           F +       G   V     ++      +++ I   K+P++AA+ G+A GGGL +++   
Sbjct: 64  FYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASD 123

Query: 122 ARIA---APKTQLGLPELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 178
             I    A                 +  L R+VG+ +A+E+ML ++++  EE    GL+ 
Sbjct: 124 MAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVS 183

Query: 179 AVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLAR 228
            V   +E  +V+   A ++AA               G +    E  +   
Sbjct: 184 RVYPKDEFREVAWKVARELAAAPTHLQVMAKERFHAGWMQPVEECTEFEI 233

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 266

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.6 bits (148), Expect = 5e-11
 Identities = 43/243 (17%), Positives = 77/243 (31%), Gaps = 25/243 (10%)

Query: 5   RVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
           +++  +      II LINP   NAL       L +  E A    DV   ++  +G  FS 
Sbjct: 6   KISYRI-EGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSS 64

Query: 64  GFDINVFQKVHGAGDVSLMPDVSVEL---------VVNLIEDCKKPIVAAVEGLALGGGL 114
           G D     K  G        + S  +         V +      K ++  + G A+G   
Sbjct: 65  GADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSA 124

Query: 115 ELAMGCHARIAAPKTQLGLPELTLGVIPG----TQRLPRLVGLSKAIEMMLLSKSITSEE 170
            L   C    +       L       +      T  LP   G +   E ++ +K    + 
Sbjct: 125 ALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDI 184

Query: 171 GWKLGLIDAVVTSEELL--KVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLAR 228
             + G I              +     ++  +    ++ L+      S    +++LK   
Sbjct: 185 MCENGFISKNFNMPSSNAEAFNAKVLEELREK----VKGLYLP----SCLGMKKLLKSNH 236

Query: 229 LQA 231
           + A
Sbjct: 237 IDA 239

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]} Length = 245

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.9 bits (146), Expect = 7e-11
 Identities = 52/195 (26%), Positives = 79/195 (40%), Gaps = 7/195 (3%)

Query: 12  NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
            DG+  I    P   NA+   +   +    + A S+DD    VLTGNG  +S G D+  F
Sbjct: 10  EDGITKIMFNRPKKKNAINTEMYHEIMRALKAA-SKDDSIITVLTGNGDYYSSGNDLTNF 68

Query: 71  QKVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
             +   G      + +V L   V    D  KP++A V G A+G  + L     A  A+ +
Sbjct: 69  TDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDR 128

Query: 129 TQLGLPELTLGVIP---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 185
                P   LG  P    +   P+++  +KA EM++  K +T+ E    GL+  V     
Sbjct: 129 ATFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDST 188

Query: 186 LLKVSRLWALDIAAR 200
             K         A  
Sbjct: 189 FQKEVWTRLKAFAKL 203

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Length = 242

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

 Score = 56.5 bits (136), Expect = 2e-09
 Identities = 31/226 (13%), Positives = 66/226 (29%), Gaps = 31/226 (13%)

Query: 283 FFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHIL--------NNIYVVLK 334
           F      +K     +I L           G  L+        ++            VV+ 
Sbjct: 22  FMRACEVAKEVGKPEIAL----THSSITYGAELLHLVPDVKEVIVSDPCFAEEPGLVVID 77

Query: 335 EVNSEYLLKGIKT-----IEANVRGLV-TRGKLTQDKANNALKMLKG-------VLDYSE 381
           E + + +++   +     I   +R +V  + K         + ++           D  E
Sbjct: 78  EFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIHLVHPEDVGLKVTSDDRE 137

Query: 382 F-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQD-R 437
             +  D+VI  + +    +  I  +   A P   I+    +        + +    +D  
Sbjct: 138 AVEGADIVITWLPKG-NKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLN 196

Query: 438 IIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV 483
           I   H      +   + I     +   V   L  +GKI +     +
Sbjct: 197 ITSYHPGCVPEMKGQVYIAEGYASEEAVNK-LYEIGKIARGKAFKM 241

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]} Length = 261

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

 Score = 54.1 bits (128), Expect = 2e-08
 Identities = 48/235 (20%), Positives = 90/235 (38%), Gaps = 7/235 (2%)

Query: 1   MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
           M+   V +    + VA+I        NAL+   +  L     +  +R +++ I+L    G
Sbjct: 1   MSYQYVNVVT-INKVAVIEFNYGRKLNALSKVFIDDLMQALSDL-NRPEIRCIILRAPSG 58

Query: 60  RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
                   ++ +   G  D     D   ++    I+   KPI++ VEG   GG  E+ M 
Sbjct: 59  SKVFSAGHDIHELPSGGRDPLSYDDPLRQITRM-IQKFPKPIISMVEGSVWGGAFEMIMS 117

Query: 120 CHARIAAPKTQLGLP---ELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 176
               IAA  +   +          + G   L R  G     E++  +  IT++    +G+
Sbjct: 118 SDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPITAQRALAVGI 177

Query: 177 IDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQA 231
           ++ VV  EEL   +   A  I+ +    I  +    ++   +      +  R+Q 
Sbjct: 178 LNHVVEVEELEDFTLQMAHHISEKAPLAIAVIKEELRVLGEAHTMNSDEFERIQG 232

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]} Length = 263

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

 Score = 53.3 bits (126), Expect = 2e-08
 Identities = 32/118 (27%), Positives = 56/118 (47%)

Query: 4   PRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
           P +       GV  IT     +NA+   +  GL   + +  + + V+A++L G GG FS 
Sbjct: 9   PGLAFAWPRPGVLEITFRGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSA 68

Query: 64  GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
           G    + +++  + +  L        +V    +  +P+VAAVE +A+G GL LA+   
Sbjct: 69  GGSFGLIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAAD 126

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 249

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

 Score = 51.8 bits (122), Expect = 8e-08
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 5  RVTMEV-GNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF 61
          RV +E     GVA++   NPPVN+L++  +  L    E+  +    + ++LT +    
Sbjct: 3  RVLVEPDAGAGVAVMKFKNPPVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGV 60

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (103), Expect = 2e-05
 Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 13 DGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVL 54
          DG   I L       NAL   ++  + +    A + DD K ++ 
Sbjct: 10 DGFTQIVLSTRSTEKNALNTEVIKEMVNALNSA-AADDSKLVLF 52

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]} Length = 230

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 6  VTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVK 50
          +  E  +D V +ITL +P   N  +  +   +KD    A + D V+
Sbjct: 1  MVFEENSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVR 46

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]} Length = 249

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

 Score = 40.9 bits (94), Expect = 3e-04
 Identities = 38/213 (17%), Positives = 74/213 (34%), Gaps = 16/213 (7%)

Query: 1   MAAP---------RVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVK 50
           +A P          + +E  + GV ++T+                L   F +     + K
Sbjct: 1   LATPFQEYSQKYENIRLER-DGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENK 59

Query: 51  AIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLAL 110
             V+   G   S   +I+      G            + ++N +   + P++AAV G   
Sbjct: 60  --VVILTGTGPSFCNEIDFTSFNLGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNGPVT 117

Query: 111 GGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSIT 167
                  M      A   T    P    G++PG       P ++G ++    +L  + + 
Sbjct: 118 NAPEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELD 177

Query: 168 SEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR 200
           +      G ++ V++ +ELL  +   A  IA +
Sbjct: 178 ARTALDYGAVNEVLSEQELLPRAWELARGIAEK 210

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	721
d1wdka4	310	Fatty oxidation complex alpha subunit, N-terminal	100.0
d1mj3a_	260	Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve	100.0
d1ef8a_	261	Methylmalonyl CoA decarboxylase {Escherichia coli	100.0
d2fw2a1	258	Chromodomain protein CDY2A {Human (Homo sapiens) [	100.0
d1nzya_	269	4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp.,	100.0
d1wz8a1	263	Probable enoyl-CoA hydratase TTHA0218 {Thermus the	100.0
d1dcia_	275	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1uiya_	253	Enoyl-CoA hydratase (crotonase) {Thermus thermophi	100.0
d1hzda_	266	AUH protein {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f6qa1	245	Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (	100.0
d1q52a_	297	Naphthoate synthase MenB {Mycobacterium tuberculos	100.0
d1sg4a1	249	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d2a7ka1	230	Carbapenem biosynthes protein CarB {Pectobacterium	100.0
d1pjha_	266	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1szoa_	249	6-oxo camphor hydrolase {Rhodococcus erythropolis	100.0
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	100.0
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	100.0
d1wdka2	95	Fatty oxidation complex alpha subunit, C-terminal	99.93
d1wdka1	124	Fatty oxidation complex alpha subunit, C-terminal	99.93
d1f0ya1	99	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	99.92
d1f0ya1	99	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	99.8
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	99.75
d1wdka2	95	Fatty oxidation complex alpha subunit, C-terminal	99.73
d1wdka1	124	Fatty oxidation complex alpha subunit, C-terminal	99.7
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	99.69
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	99.62
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	99.58
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	99.57
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	99.56
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	99.52
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	99.49
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	99.23
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	99.2
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	99.2
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	99.16
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	99.15
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	99.13
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	99.1
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	99.09
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	99.02
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	98.84
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	98.83
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	98.82
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	98.79
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	98.77
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	98.71
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	98.71
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	98.69
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	98.67
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	98.66
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	98.64
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	98.6
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	98.52
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	98.5
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	98.49
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	98.46
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	98.37
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	98.34
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	98.21
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	98.16
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	98.15
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	98.12
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	98.1
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	97.94
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	97.89
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	97.88
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.75
d2cbya1	179	Clp protease, ClpP subunit {Mycobacterium tubercul	97.74
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.7
d1yg6a1	183	Clp protease, ClpP subunit {Escherichia coli [TaxI	97.64
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	97.63
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	97.6
d1y7oa1	192	Clp protease, ClpP subunit {Streptococcus pneumoni	97.6
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	97.58
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.57
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	97.54
d2f6ia1	190	Clp protease, ClpP subunit {Plasmodium falciparum	97.5
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	97.48
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.44
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	97.42
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	97.4
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	97.38
d1tg6a1	193	Clp protease, ClpP subunit {Human (Homo sapiens),	97.36
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	97.35
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	97.32
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	97.26
d1on3a1	253	Methylmalonyl-CoA carboxyltransferase (transcarbox	97.05
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	96.97
d2a7sa1	258	Propionyl-CoA carboxylase complex B subunit, PccB	96.92
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.9
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	96.86
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	96.82
d1xnya1	258	Propionyl-CoA carboxylase complex B subunit, PccB	96.7
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	96.69
d1pixa2	287	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	96.64
d1vrga1	251	Propionyl-CoA carboxylase complex B subunit, PccB	96.62
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	96.61
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	96.59
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	96.59
d2f9yb1	263	Acetyl-coenzyme A carboxylase carboxyl transferase	96.54
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	96.42
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.42
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	96.4
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	96.4
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	96.35
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.29
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	96.28
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	96.27
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.16
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	96.15
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.13
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.03
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	96.02
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.02
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	96.0
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	95.95
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	95.95
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	95.9
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	95.89
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	95.85
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	95.84
d2f9ya1	316	Acetyl-coenzyme A carboxylase carboxyl transferase	95.81
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	95.79
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	95.79
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	95.69
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	95.52
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.51
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	95.48
d1vrga2	264	Propionyl-CoA carboxylase complex B subunit, PccB	95.47
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	95.46
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	95.44
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	95.41
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	95.39
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	95.28
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.26
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.21
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.19
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	95.11
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.03
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	94.86
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	94.83
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	94.73
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	94.7
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	94.62
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.57
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	94.55
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	94.38
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	94.38
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	94.32
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	94.3
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	94.29
d1xnya2	263	Propionyl-CoA carboxylase complex B subunit, PccB	94.25
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	94.24
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	94.24
d1uyra1	333	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	94.15
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	94.04
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	94.02
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	94.01
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	93.99
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	93.99
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	93.94
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	93.92
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	93.87
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	93.8
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	93.79
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	93.76
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	93.71
d2a7sa2	271	Propionyl-CoA carboxylase complex B subunit, PccB	93.7
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	93.56
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	93.49
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	93.4
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	93.19
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	93.14
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	93.12
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.11
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	93.08
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	93.05
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	93.03
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	93.02
d1on3a2	264	Methylmalonyl-CoA carboxyltransferase (transcarbox	92.97
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	92.91
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	92.89
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	92.89
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	92.85
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	92.78
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	92.73
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	92.67
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	92.47
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	92.42
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	92.38
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	92.33
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	92.33
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	92.3
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	92.24
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	91.99
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	91.99
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	91.82
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	91.81
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	91.78
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	91.72
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	91.65
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	91.57
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	91.53
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	91.46
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	91.44
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	91.41
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	91.37
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	91.37
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	91.16
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	91.05
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	90.94
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	90.75
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	90.45
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	90.33
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.2
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	90.16
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	90.11
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	90.1
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	89.82
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	89.72
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	89.6
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	89.58
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	89.36
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	89.28
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	89.23
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	89.1
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	88.92
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	88.88
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	88.76
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	88.75
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	88.7
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	88.66
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	88.48
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	88.36
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	88.35
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	88.24
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	88.2
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	88.19
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	88.17
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	88.12
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	88.01
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	87.98
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	87.92
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	87.91
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	87.79
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	87.75
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	87.75
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	87.67
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	87.63
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	87.53
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	87.46
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	87.42
d1pixa3	299	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	87.35
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	87.27
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	87.27
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	86.99
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	86.99
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	86.96
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	86.79
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	86.75
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	86.48
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	86.44
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	86.36
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	86.28
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	86.21
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	85.85
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	85.8
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	85.6
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	85.55
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	85.23
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	85.19
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	85.09
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	85.06
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	84.67
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	84.35
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	84.16
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	84.07
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	83.76
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	83.67
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	83.43
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	83.4
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	83.28
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	83.18
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	83.13
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	82.92
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	82.67
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	82.64
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	82.48
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	82.44
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	82.26
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	82.22
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	82.1
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	81.99
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	81.95
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	81.93
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	81.92
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	81.18
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	80.94
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	80.92
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	80.68
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	80.54
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	80.5
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	80.43
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	80.36
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	80.34
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	80.13
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	80.06

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=100.00  E-value=3.6e-51  Score=429.78  Aligned_cols=294  Identities=25%  Similarity=0.353  Sum_probs=248.5

Q ss_pred             CCC--CcEEEEEecCcEEEEEeC-CCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCC
Q 004972            1 MAA--PRVTMEVGNDGVAIITLI-NPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA   76 (721)
Q Consensus         1 m~~--~~v~~~~~~~~v~~i~l~-~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~   76 (721)
                      |.|  +.++++..++||++|+|| +|+ .|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++......
T Consensus         1 M~~~~~~i~~~~~~~gva~i~ln~~p~~~Nal~~~~~~el~~al~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~   80 (310)
T d1wdka4           1 MIYEGKAITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFVENFKL   80 (310)
T ss_dssp             CCEECSSEEEEECGGGEEEEEECCTTSSSCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSSBBCCCHHHHHHHTTS
T ss_pred             CCcCCceEEEEEecCCEEEEEECCCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccchhhhhhhhhcccc
Confidence            553  589998877899999998 674 7999999999999999999999999999999999999999999998764433


Q ss_pred             Cccc--ccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---cccccccc
Q 004972           77 GDVS--LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLV  151 (721)
Q Consensus        77 ~~~~--~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~  151 (721)
                      ....  ......++++ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++|+|++
T Consensus        81 ~~~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~elal~cD~ria~~~a~f~~pe~~~Gl~P~~gg~~~L~r~i  159 (310)
T d1wdka4          81 PDAELIAGNLEANKIF-SDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLI  159 (310)
T ss_dssp             CHHHHHHHHHHHHHHH-HHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHH
T ss_pred             cchhhhhhhhHHHHHH-HHhhcCCccceeeccccccccccccchhhhhhhccccceecccccccCCCccccchhhhhhhh
Confidence            2211  1112234555 6799999999999999999999999999999999999999999999999997   89999999


Q ss_pred             CHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCC--CcHHHHHHHHHHHH
Q 004972          152 GLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLG--SLSEAREVLKLARL  229 (721)
Q Consensus       152 G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  229 (721)
                      |..++++|+++|++++|+||+++||||+|||++++++.+.++++++++.+..+...........  +..+....+.....
T Consensus       160 G~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (310)
T d1wdka4         160 GVDNAVEWIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKAKRQPKLEKLKLNAIEQMMAFETAKG  239 (310)
T ss_dssp             CHHHHHHHHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHHTTSSCHHHHHGGGGSCCSCCHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhccccccCHHHHhhccCccEEccHHHHHHHHHHHHHHHHhcccchhhhhhhhcccccccchhhhHHHHHhhh
Confidence            9999999999999999999999999999999999999999999999988755433221111111  21222223333333


Q ss_pred             -HHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCCCC
Q 004972          230 -QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNV  295 (721)
Q Consensus       230 -~~~~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~~~  295 (721)
                       ..++++++|||+.+++++++.+...+++++|+.|++.|.+++.|++++++|++|++||+.+|.++.
T Consensus       240 ~~~~~~~~~~pA~~~~l~~v~~~~~~~~~~~L~~E~~~f~~l~~t~~a~~~i~aF~~kr~~~k~a~~  306 (310)
T d1wdka4         240 FVAGQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSASNCLIGLFLNDQELKKKAKV  306 (310)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhccCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCCCC
Confidence             345789999999999999999999999999999999999999999999999999999999886543

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.8e-48  Score=400.91  Aligned_cols=251  Identities=32%  Similarity=0.413  Sum_probs=223.9

Q ss_pred             CCCcEEEEEe--cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCc
Q 004972            2 AAPRVTMEVG--NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD   78 (721)
Q Consensus         2 ~~~~v~~~~~--~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~   78 (721)
                      .|++|.+++.  +++|++||||||+ .|+||.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++....... 
T Consensus         2 ~~~~i~~e~~g~~~~I~~itlnrP~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~-   80 (260)
T d1mj3a_           2 NFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQD-   80 (260)
T ss_dssp             CCSSEEEEEESGGGCEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEECCBCHHHHTTCCHHH-
T ss_pred             CCeEEEEEEEcCCCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCcceEEEecccccccccchhhhhhccchhh-
Confidence            3788999983  2589999999995 69999999999999999999999999999999999999999999986532111 


Q ss_pred             ccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHH
Q 004972           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSK  155 (721)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~  155 (721)
                        .+......++ ..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|+   +++|+|++|.++
T Consensus        81 --~~~~~~~~~~-~~~~~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~ig~~~  157 (260)
T d1mj3a_          81 --CYSGKFLSHW-DHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSL  157 (260)
T ss_dssp             --HHHC--CCGG-GGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHHCHHH
T ss_pred             --hhHHHHHHHH-HHhccCCCeEEEEEcCeEeHHHHHHHHHCCEEEEcCCCEEECchhccCcCCcccHHHHHHHHhCHHH
Confidence              1111222334 5588999999999999999999999999999999999999999999999997   889999999999


Q ss_pred             HHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004972          156 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  235 (721)
Q Consensus       156 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (721)
                      |++|+++|++++|+||+++|||++|++.+++.+.+.+++.++++.++.                                
T Consensus       158 a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~a~~~a~~i~~~~~~--------------------------------  205 (260)
T d1mj3a_         158 AMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSKI--------------------------------  205 (260)
T ss_dssp             HHHHHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHHHHHHHSCHH--------------------------------
T ss_pred             HHHHHHcCcccCchhhccCCCceeeecccccccccccccccccchhhH--------------------------------
Confidence            999999999999999999999999999999999999999999998864                                


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004972          236 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  292 (721)
Q Consensus       236 ~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  292 (721)
                          |...+|++++.....+++++++.|.+.+..++.|+|++|++++|++||+|++.
T Consensus       206 ----a~~~~K~~l~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egi~aFleKR~P~f~  258 (260)
T d1mj3a_         206 ----IVAMAKESVNAAFEMTLTEGNKLEKKLFYSTFATDDRREGMSAFVEKRKANFK  258 (260)
T ss_dssp             ----HHHHHHHHHHGGGSSCHHHHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCCCC
T ss_pred             ----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCCC
Confidence                33456788999999999999999999999999999999999999999998753

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.5e-47  Score=393.46  Aligned_cols=252  Identities=21%  Similarity=0.277  Sum_probs=218.3

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeC--CCCCcCCCCchhhhhccCCC
Q 004972            1 MAAPRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN--GGRFSGGFDINVFQKVHGAG   77 (721)
Q Consensus         1 m~~~~v~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~--g~~F~aG~Dl~~~~~~~~~~   77 (721)
                      |+|++|.+++ +++|++|||||| +.|++|.+|+.+|.+++++++ ++++++|||+|.  |++||+|+|++++...... 
T Consensus         1 M~~~~i~~~~-~~~v~~Itlnrp~~~Nal~~~~~~~l~~al~~~~-~~~~~~vVl~g~~g~~~F~aG~Dl~~~~~~~~~-   77 (261)
T d1ef8a_           1 MSYQYVNVVT-INKVAVIEFNYGRKLNALSKVFIDDLMQALSDLN-RPEIRCIILRAPSGSKVFSAGHDIHELPSGGRD-   77 (261)
T ss_dssp             CCCSSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHTC-STTCCEEEEECCTTCSEEECCSCSTTC-----C-
T ss_pred             CCCCEEEEEE-ECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEeccccchhhcccccccccccCCcc-
Confidence            9999999999 899999999999 479999999999999999997 567999999986  5789999999998653322 


Q ss_pred             cccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHH
Q 004972           78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLS  154 (721)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~  154 (721)
                       ...+......++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++++|++|..
T Consensus        78 -~~~~~~~~~~~~-~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~~~~pe~~~Gl~~~~~~~~~l~r~~g~~  155 (261)
T d1ef8a_          78 -PLSYDDPLRQIT-RMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFH  155 (261)
T ss_dssp             -TTCTTSHHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCHH
T ss_pred             -ccccccchhhhH-HHHHhCchhhhhcccccccchhhhhhhhhhhhhhhHhHHHhhhhcccccccccccccccccccCcc
Confidence             223344556677 7799999999999999999999999999999999999999999999999998   88999999999


Q ss_pred             HHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004972          155 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  234 (721)
Q Consensus       155 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (721)
                      ++++++++|+.++|+||+++||||+|+|++++.+++.++++++++.+|.++                             
T Consensus       156 ~a~~~~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~~~~a~-----------------------------  206 (261)
T d1ef8a_         156 IVKELIFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAI-----------------------------  206 (261)
T ss_dssp             HHHHHHHHCCCEEHHHHHHTTSCSEEECHHHHHHHHHHHHHHHTTSCHHHH-----------------------------
T ss_pred             ccccccccCceEcHHHHHHcCCcceeeechhhhhhhHHHHHHHHhcCcHHH-----------------------------
Confidence            999999999999999999999999999999999999999999999886432                             


Q ss_pred             CCCChhHHHHHHHHHHhhcCCH--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCC
Q 004972          235 APNMPQHQACLDVIEEGIVHGG--YSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  293 (721)
Q Consensus       235 ~~~~~A~~~~~~~i~~~~~~~~--~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~  293 (721)
                             ..+|+.++.......  ...++.+...+..++.|+|++|++++|++||+|.++.
T Consensus       207 -------~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~s~D~~Egi~AfleKR~P~f~G  260 (261)
T d1ef8a_         207 -------AVIKEELRVLGEAHTMNSDEFERIQGMRRAVYDSEDYQEGMNAFLEKRKPNFVG  260 (261)
T ss_dssp             -------HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCCC
T ss_pred             -------HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCcCCC
Confidence                   244566666554443  4556667778889999999999999999999988643

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6e-48  Score=395.47  Aligned_cols=249  Identities=20%  Similarity=0.304  Sum_probs=221.6

Q ss_pred             CCcEEEEEecCcEEEEEeC-CCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCc--
Q 004972            3 APRVTMEVGNDGVAIITLI-NPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD--   78 (721)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~-~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~--   78 (721)
                      |++|.+++ +++|++|++| ||+ .|++|.+|+.+|.++++.+++| ++++|||||.|++||+|+|++++........  
T Consensus         1 y~~i~v~~-~~gi~~i~l~~rp~~~Nals~~~~~el~~al~~~~~d-~~~~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~   78 (258)
T d2fw2a1           1 YRDIVVKK-EDGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAAD-DSKLVLFSAAGSVFCCGLDFGYFVRHLRNDRNT   78 (258)
T ss_dssp             CCSEEEEE-ETTEEEEEECCSSSSTTCBCHHHHHHHHHHHHHHHHS-SCSEEEEEECSSCSBCCBCHHHHHHHHHHCHHH
T ss_pred             CceEEEEE-ECCEEEEEECCCCcccCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCccccccccccchhhhcccccccc
Confidence            57899999 8999999997 574 7999999999999999999887 5699999999999999999999865322111  


Q ss_pred             -ccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHH
Q 004972           79 -VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLS  154 (721)
Q Consensus        79 -~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~  154 (721)
                       ...+....++++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+   +++++|++|..
T Consensus        79 ~~~~~~~~~~~~~-~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~ig~~  157 (258)
T d2fw2a1          79 ASLEMVDTIKNFV-NTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKA  157 (258)
T ss_dssp             HHHHHHHHHHHHH-HHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHH
T ss_pred             hhhHHHHHHHHHH-HhhhccceeeeeecccccccccccccccccccceecccceeeccccccccccccccccchhhcCcc
Confidence             122334455666 6699999999999999999999999999999999999999999999999997   88999999999


Q ss_pred             HHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004972          155 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  234 (721)
Q Consensus       155 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (721)
                      ++++|+++|++++|++|+++||||+|||++++.+++.++++++++.|+.+                              
T Consensus       158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~~a------------------------------  207 (258)
T d2fw2a1         158 SANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKELASYNAIV------------------------------  207 (258)
T ss_dssp             HHHHHHTTCCEEEHHHHHHTTSCSEEECSTTHHHHHHHHHHHHTTSCHHH------------------------------
T ss_pred             ccchhhccCcccccccccccccccccccccccccccchhhhhhhhhhHHH------------------------------
Confidence            99999999999999999999999999999999999999999999988643                              


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhc
Q 004972          235 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS  290 (721)
Q Consensus       235 ~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~  290 (721)
                            ...+|+.++.....+++++++.|.+.+..++.|+|++|++++|+|||+|+
T Consensus       208 ------~~~~K~~~~~~~~~~l~~~~~~e~~~~~~~~~s~d~~Egi~af~EKR~p~  257 (258)
T d2fw2a1         208 ------LEECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKYVENKIDE  257 (258)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHSSCCC
T ss_pred             ------HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCC
Confidence                  23456778887778899999999999999999999999999999999875

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

Probab=100.00  E-value=9.3e-48  Score=396.87  Aligned_cols=254  Identities=23%  Similarity=0.324  Sum_probs=226.2

Q ss_pred             CCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCc---
Q 004972            3 APRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD---   78 (721)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~---   78 (721)
                      |++|.+++ +|||++|||||| +.|++|.+|+.+|.++++++++|+++++|||||.|+.||+|+|++++........   
T Consensus         2 y~~i~~~i-~dgVa~Itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~i~~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~   80 (269)
T d1nzya_           2 YEAIGHRV-EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGVRD   80 (269)
T ss_dssp             CSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHHHH
T ss_pred             CCceEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCcccccchhhHHHHhhcccccchhh
Confidence            47899999 799999999999 6799999999999999999999999999999999999999999998853211110   


Q ss_pred             -ccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHH
Q 004972           79 -VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLS  154 (721)
Q Consensus        79 -~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~  154 (721)
                       ........+.++ ..+.++|||+||+|||+|+|||++|+++|||||++++++|++||.++|++|+   ++++++++|..
T Consensus        81 ~~~~~~~~~~~~~-~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~~~~~g~~~~~g~~~~l~~~ig~~  159 (269)
T d1nzya_          81 HFRIAALWWHQMI-HKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMR  159 (269)
T ss_dssp             HHHHHHHHHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-HHHHhhcchhehhhhhhcCCCceeeeecccHhhhhhhhhhcccccccccccccccccccccccChh
Confidence             111112233455 6689999999999999999999999999999999999999999999999987   89999999999


Q ss_pred             HHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh
Q 004972          155 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT  234 (721)
Q Consensus       155 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (721)
                      +|+++++||+.++|+||+++||||+|||++++.+++.++|+++++.++.+                              
T Consensus       160 ~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a------------------------------  209 (269)
T d1nzya_         160 RAMELMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAWKVARELAAAPTHL------------------------------  209 (269)
T ss_dssp             HHHHHHHHCCCBCHHHHHHHTSCSCEECHHHHHHHHHHHHHHHHHSCHHH------------------------------
T ss_pred             hhhhccccccccchhHHHHcCCccccccccccccchhhhhhhhhhhhHHH------------------------------
Confidence            99999999999999999999999999999999999999999999987643                              


Q ss_pred             CCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCCC
Q 004972          235 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPN  294 (721)
Q Consensus       235 ~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~~  294 (721)
                            ...+|+.++.+...+++++++.|.+.+..++.++|++++|++|++||++++.+.
T Consensus       210 ------~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~e~v~aflekrkp~~~~~  263 (269)
T d1nzya_         210 ------QVMAKERFHAGWMQPVEECTEFEIQNVIASVTHPHFMPCLTRFLDGHRADRPQV  263 (269)
T ss_dssp             ------HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHSTTHHHHHHHHHTTCCTTCCSS
T ss_pred             ------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHCCCCCCcCCC
Confidence                  235678888888899999999999999999999999999999999999987553

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.4e-47  Score=393.82  Aligned_cols=250  Identities=24%  Similarity=0.267  Sum_probs=220.5

Q ss_pred             CCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCC-Cccc
Q 004972            3 APRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA-GDVS   80 (721)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~-~~~~   80 (721)
                      |+.+.++.+++||++||| || +.|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++...... ....
T Consensus         8 ~~~i~~~~~~~gV~~itl-rp~~~Nal~~~m~~el~~~~~~~~~d~~vr~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~   86 (263)
T d1wz8a1           8 YPGLAFAWPRPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFGLIEEMRASHEALL   86 (263)
T ss_dssp             CTTEEEEEEETTEEEEEE-CCSGGGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGGGCCBCCBCHHHHHHHHHCHHHHH
T ss_pred             CCeEEEEEcCCCEEEEEE-CCCCCCCCCHHHHHHHHHHHHHHhhCCCCeEEEEecccccccccchhhhhhhhcccccccc
Confidence            678999987789999999 56 68999999999999999999999999999999999999999999998654222 1122


Q ss_pred             ccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHH
Q 004972           81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAI  157 (721)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~  157 (721)
                      .+.....+++ ..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|+   ++++++++|..+|+
T Consensus        87 ~~~~~~~~~~-~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~~G~~~a~  165 (263)
T d1wz8a1          87 RVFWEARDLV-LGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAK  165 (263)
T ss_dssp             HHHHHHHHHH-HHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCHHHHH
T ss_pred             cchhhhhHHH-HHhhhhhcceeeeccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence            3333445666 6689999999999999999999999999999999999999999999999997   89999999999999


Q ss_pred             HHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCC
Q 004972          158 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN  237 (721)
Q Consensus       158 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (721)
                      +|+++|++++|+||+++||||+|||++++++++.++|+++++.||.++                                
T Consensus       166 ~l~l~g~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~al--------------------------------  213 (263)
T d1wz8a1         166 YHLLLNEPLTGEEAERLGLVALAVEDEKVYEKALEVAERLAQGPKEAL--------------------------------  213 (263)
T ss_dssp             HHHHHTCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHH--------------------------------
T ss_pred             hhcccccccchhHHHhcCCcccccchhhhhHHHHHHHHHhhccHHHHH--------------------------------
Confidence            999999999999999999999999999999999999999999886533                                


Q ss_pred             ChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcC
Q 004972          238 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK  291 (721)
Q Consensus       238 ~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~  291 (721)
                          ..+|++++...... .+.++.|.+.+..++.|+|++|++++|++||+|++
T Consensus       214 ----~~~K~~l~~~~~~~-~~~~~~e~~~~~~~~~s~d~~Egi~Af~eKR~P~f  262 (263)
T d1wz8a1         214 ----HHTKHALNHWYRSF-LPHFELSLALEFLGFSGKELEEGLKALKEKRPPEF  262 (263)
T ss_dssp             ----HHHHHHHHHHHHTT-HHHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCCC
T ss_pred             ----HHHHHHHHHHHhCh-HHHHHHHHHHHHHHccCHHHHHHHHHHhCCCCCCC
Confidence                24566777666544 45689999999999999999999999999998874

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1e-46  Score=390.94  Aligned_cols=254  Identities=20%  Similarity=0.302  Sum_probs=221.9

Q ss_pred             CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCccc
Q 004972            2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS   80 (721)
Q Consensus         2 ~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~   80 (721)
                      +|+++.++..+++|++||||||+ .|+||.+|+.+|.++++.+++|+++++|||||.|++||+|+|+.++..........
T Consensus         1 ~y~~l~~~~~~~~I~~itlnrP~~~Nals~~m~~el~~~l~~~~~d~~v~~vvltg~~~~F~aG~dl~~~~~~~~~~~~~   80 (275)
T d1dcia_           1 AYESIQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGD   80 (275)
T ss_dssp             CCSSEEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCHHHHHHHHTSCCCS
T ss_pred             CCceEEEEEccCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeccccccccCccHHHhhhcccccccc
Confidence            58899987657899999999995 79999999999999999999999999999999999999999999887543322111


Q ss_pred             c----------cchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---cccc
Q 004972           81 L----------MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRL  147 (721)
Q Consensus        81 ~----------~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l  147 (721)
                      .          .....+.++ ..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|+   ++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~-~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~Gl~p~~~~~~~~  159 (275)
T d1dcia_          81 DVARIAWYLRDLISRYQKTF-TVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRL  159 (275)
T ss_dssp             SHHHHHHHHHHHHHHHHHHH-HHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHG
T ss_pred             cccchhhhhccchhhhHHHH-HHHHhcCCCEEEEEeeEeehhhHHHHhhcCchhhccCccccchhccccccccccccccc
Confidence            1          111223445 5689999999999999999999999999999999999999999999999998   8999


Q ss_pred             ccccCHHH-HHHHHHcCCCcCHHHHHHcCCccEEcCCch-HHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHH
Q 004972          148 PRLVGLSK-AIEMMLLSKSITSEEGWKLGLIDAVVTSEE-LLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLK  225 (721)
Q Consensus       148 ~r~~G~~~-a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~-l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (721)
                      ++++|... +.+++++|++++|+||+++||||+|+|+++ +.+++.++++++++.+|.+                     
T Consensus       160 ~~~~g~~~~~~~ll~~g~~~~a~eA~~~Glv~~v~~~~~~l~~~~~~~a~~i~~~~p~a---------------------  218 (275)
T d1dcia_         160 PKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKSPVA---------------------  218 (275)
T ss_dssp             GGTCSCHHHHHHHHHHCCEEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHHSCHHH---------------------
T ss_pred             ccccccccccccccccccccchhhhccCCCceeeeehhhhhhhcccccccccccccHHH---------------------
Confidence            99999554 568999999999999999999999998755 6788889999999988743                     


Q ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004972          226 LARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  292 (721)
Q Consensus       226 ~~~~~~~~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  292 (721)
                                     +..+|+.++.+...+++++++.|...+..++.|+|++|+|++|++||+|++.
T Consensus       219 ---------------~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~Egi~AfleKR~pk~~  270 (275)
T d1dcia_         219 ---------------VQGSKINLIYSRDHSVDESLDYMATWNMSMLQTQDIIKSVQAAMEKKDSKSI  270 (275)
T ss_dssp             ---------------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSHHHHHHHHHHHTTCCGGGC
T ss_pred             ---------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCCC
Confidence                           3355778888888999999999999999999999999999999999998874

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=4.9e-47  Score=388.53  Aligned_cols=245  Identities=24%  Similarity=0.338  Sum_probs=218.6

Q ss_pred             EEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCc--ccccchH
Q 004972            9 EVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD--VSLMPDV   85 (721)
Q Consensus         9 ~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~--~~~~~~~   85 (721)
                      ++++++|++||||||+ .|++|.+|+.+|.+++++++.|+++++|||||.|+.||+|+|++++........  .......
T Consensus         3 ~ie~G~va~Itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~v~~vvl~g~g~~f~aG~dl~~~~~~~~~~~~~~~~~~~~   82 (253)
T d1uiya_           3 QVEKGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEENYRHSLS   82 (253)
T ss_dssp             EEECSSEEEEEECCGGGTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred             EEeeCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEecccccccccchhHHhhhccccCcccccchhhh
Confidence            4434679999999996 699999999999999999999999999999999999999999998865433221  1112223


Q ss_pred             HHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc--ccccccccCHHHHHHHHHcC
Q 004972           86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG--TQRLPRLVGLSKAIEMMLLS  163 (721)
Q Consensus        86 ~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~--~~~l~r~~G~~~a~~l~ltg  163 (721)
                      ...++ ..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|+  +++|+|++|..+|++|++||
T Consensus        83 ~~~~~-~~i~~~~kpvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~e~~~g~~~~~~~~~l~~~~g~~~a~~l~l~g  161 (253)
T d1uiya_          83 LMRLF-HRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAALVSVILVRAVGEKAAKDLLLTG  161 (253)
T ss_dssp             HHHHH-HHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCHHHHHHHHHHSCHHHHHHHHHHC
T ss_pred             hhhhh-hHHhcCCCCEEEEeCeEEehhhHHHHhhhhhhhhhhhhHHhhhhcccccccccchhhhhcccCHHHHHHHhhcC
Confidence            33445 6689999999999999999999999999999999999999999999999987  88999999999999999999


Q ss_pred             CCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCChhHHH
Q 004972          164 KSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQA  243 (721)
Q Consensus       164 ~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~  243 (721)
                      ++++|+||+++||||+|+|++++.+.+.++++++++.++..                                    ...
T Consensus       162 ~~~~a~eA~~~Glv~~v~~~~~~~~~a~~~a~~~~~~~~~a------------------------------------~~~  205 (253)
T d1uiya_         162 RLVEAREAKALGLVNRIAPPGKALEEAKALAEEVAKNAPTS------------------------------------LRL  205 (253)
T ss_dssp             CEEEHHHHHHHTSCSEEECTTCHHHHHHHHHHHHHHSCHHH------------------------------------HHH
T ss_pred             cCCCHHHHHHhCCCcccccccccchhHHHHHHhhcccchHH------------------------------------HHH
Confidence            99999999999999999999999999999999999988643                                    335


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhc
Q 004972          244 CLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS  290 (721)
Q Consensus       244 ~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~  290 (721)
                      +|+.+++....++++++..|.+.+..++.|+|++|++++|++||+|+
T Consensus       206 ~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~egi~af~eKR~P~  252 (253)
T d1uiya_         206 TKELLLALPGMGLEDGFRLAALANAWVRETGDLAEGIRAFFEKRPPR  252 (253)
T ss_dssp             HHHHHHHGGGSCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHTTSCCC
T ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCC
Confidence            67889998999999999999999999999999999999999999875

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-46  Score=386.59  Aligned_cols=246  Identities=26%  Similarity=0.408  Sum_probs=213.1

Q ss_pred             EEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcCCCCchhhhhccCCCcccccchHH
Q 004972            9 EVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVSLMPDVS   86 (721)
Q Consensus         9 ~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~~~~~~   86 (721)
                      +.+++||++||||||+ .|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|.|++++...... ....+....
T Consensus        10 ~~~~~gI~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~f~~g~d~~~~~~~~~~-~~~~~~~~~   88 (266)
T d1hzda_          10 EEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSS-EVGPFVSKI   88 (266)
T ss_dssp             CGGGTTEEEEEECCGGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCHH-HHHHHHHHH
T ss_pred             EEecCCEEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHhCCCcceEEEeccccccccccccccccccccch-hhhhhhhHH
Confidence            3445789999999995 6999999999999999999999999999999987 479999999988653321 122333445


Q ss_pred             HHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHHHHHcC
Q 004972           87 VELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLS  163 (721)
Q Consensus        87 ~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~l~ltg  163 (721)
                      ..++ +.+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|+   +++|++++|..+|++|++||
T Consensus        89 ~~~~-~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~ig~~~a~~l~ltg  167 (266)
T d1hzda_          89 RAVI-NDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSA  167 (266)
T ss_dssp             HHHH-HHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHT
T ss_pred             HHHH-HHHhcCCcccccccccccccccceeccccceeeecCCcEEeecccceeecCCccceeeehhhhHHHHHHhhhccC
Confidence            5666 6799999999999999999999999999999999999999999999999997   88999999999999999999


Q ss_pred             CCcCHHHHHHcCCccEEcCCchHHHHHHHH----HHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCCCCh
Q 004972          164 KSITSEEGWKLGLIDAVVTSEELLKVSRLW----ALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP  239 (721)
Q Consensus       164 ~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~----a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (721)
                      ++++|++|+++||||+|||++++.+++.+.    ++++++.+|.                                    
T Consensus       168 ~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~a~~~a~~i~~~~p~------------------------------------  211 (266)
T d1hzda_         168 RVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPV------------------------------------  211 (266)
T ss_dssp             CEEEHHHHHHHTSCSEEECCCTTSCHHHHHHHHHHHTTTTSCHH------------------------------------
T ss_pred             CccCHHHhhcccccccccChhhhhhHHHHHHHHHHHhcccCChH------------------------------------
Confidence            999999999999999999987755555544    4555555543                                    


Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCC
Q 004972          240 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV  292 (721)
Q Consensus       240 A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~  292 (721)
                      |...+|++++++...++.++++.|.+.+..++.|+|++|++++|++||+|++.
T Consensus       212 a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~Eg~~AF~eKR~P~f~  264 (266)
T d1hzda_         212 AMRVAKLAINQGMEVDLVTGLAIEEACYAQTIPTKDRLEGLLAFKEKRPPRYK  264 (266)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTTSCCCCC
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCCC
Confidence            33456788999999999999999999999999999999999999999998764

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-44  Score=368.32  Aligned_cols=237  Identities=23%  Similarity=0.287  Sum_probs=207.3

Q ss_pred             CCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCc---
Q 004972            3 APRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD---   78 (721)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~---   78 (721)
                      |++|.+++ +++|++|||||| +.|++|.+|+.+|.+++++++.|+.+ +||++|.|++||+|+|++++........   
T Consensus         2 ~~~i~~~~-~~gi~~Itlnrp~~~Nals~~~~~~l~~~l~~~~~d~~v-~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   79 (245)
T d2f6qa1           2 FETLVVTS-EDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNGDYYSSGNDLTNFTDIPPGGVEEK   79 (245)
T ss_dssp             CSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEESTTCSBCCBCC----CCCTTHHHHH
T ss_pred             cceEEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCce-EEeecCCCccccCCccchhhhcccccccccc
Confidence            57899999 799999999999 68999999999999999999998877 8999999999999999999865432221   


Q ss_pred             ccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHH
Q 004972           79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSK  155 (721)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~  155 (721)
                      .........+++ +.+.++|||+||+|||+|+|||++|+++|||||++++++|++||+++|++|+   +++|++++|..+
T Consensus        80 ~~~~~~~~~~~~-~~i~~~~kpvIa~v~G~a~GgG~~la~~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~g~~~  158 (245)
T d2f6qa1          80 AKNNAVLLREFV-GCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPAK  158 (245)
T ss_dssp             HHHHHHHHHHHH-HHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCHHH
T ss_pred             cchhhhHHHHHH-hhhhhcCCceEEEECCccccccccchhhhhhhhhhccCeEecccccCCCCccccchhhcccccccch
Confidence            111222234555 6799999999999999999999999999999999999999999999999997   889999999999


Q ss_pred             HHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhC
Q 004972          156 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA  235 (721)
Q Consensus       156 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (721)
                      |++++++|++++|+||+++||||+|+|++++++++.++|+++++.||.+                               
T Consensus       159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a-------------------------------  207 (245)
T d2f6qa1         159 ATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKLPPNA-------------------------------  207 (245)
T ss_dssp             HHHHHTTCCCEEHHHHHHTTSCSEEECTTTHHHHHHHHHHHHTTSCHHH-------------------------------
T ss_pred             hhhhcccccccccccccccccccccCCcchHHHHHHHHHHHHHcCCHHH-------------------------------
Confidence            9999999999999999999999999999999999999999999988643                               


Q ss_pred             CCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHH
Q 004972          236 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRG  278 (721)
Q Consensus       236 ~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~  278 (721)
                           ...+|++++.....++++.++.|.+.+..++.|+|+++
T Consensus       208 -----~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~n  245 (245)
T d2f6qa1         208 -----LRISKEVIRKREREKLHAVNAEECNVLQGRWLSDECTN  245 (245)
T ss_dssp             -----HHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHTSHHHHC
T ss_pred             -----HHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcCcccCC
Confidence                 23457788888888899999999999999999999975

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=3.4e-44  Score=375.43  Aligned_cols=254  Identities=23%  Similarity=0.269  Sum_probs=204.8

Q ss_pred             CCCcEEEEEe-cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-------CCCcCCCCchhhhh
Q 004972            2 AAPRVTMEVG-NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-------GRFSGGFDINVFQK   72 (721)
Q Consensus         2 ~~~~v~~~~~-~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g-------~~F~aG~Dl~~~~~   72 (721)
                      +...|+++.+ ++||++||||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.+       +.||+|.|++.+..
T Consensus        16 ~~~~i~~~~~~~~gi~~ItlnRP~~~NAl~~~m~~eL~~~l~~~~~d~~vr~vVltg~~~~f~~gG~~f~ag~Dl~~~~~   95 (297)
T d1q52a_          16 DLTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGR   95 (297)
T ss_dssp             TCSSEEEEEESSSSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCC-------
T ss_pred             CCcceEEEEEccCCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCccEEEEecCCCcccchhhhhhhcchhhhhcc
Confidence            4566888875 6899999999995 6999999999999999999999999999999984       45777778776543


Q ss_pred             ccCCC----------cccccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCC-ceEeCcccccCcc
Q 004972           73 VHGAG----------DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVI  141 (721)
Q Consensus        73 ~~~~~----------~~~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~-a~~~~pe~~~Gl~  141 (721)
                      .....          ...........++ +.|.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|++
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~kPvIaav~G~a~GGG~~lal~~D~~ia~~~~~~f~~pe~~~Gl~  174 (297)
T d1q52a_          96 SGYQYASGDTADTVDVARAGRLHILEVQ-RLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSF  174 (297)
T ss_dssp             ----------------------CHHHHH-HHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCGGGGTCC
T ss_pred             cccccccccccchhhhHHHHHHHHHHHH-HHHHhcCCeEEEEEcceeeeccchhhhhhhccccccccccceeeeeccccc
Confidence            21110          0111112233555 6689999999999999999999999999999999865 5799999999999


Q ss_pred             cc---ccccccccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcH
Q 004972          142 PG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLS  218 (721)
Q Consensus       142 P~---~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~  218 (721)
                      |+   +++|+|++|..+|+++++||++++|+||+++||||+|||++++++++.++++++++.++.++             
T Consensus       175 p~~~~~~~L~r~iG~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~el~~~~~~~a~~l~~~~~~a~-------------  241 (297)
T d1q52a_         175 DGGYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAEHAELETVGLQWAAEINAKSPQAQ-------------  241 (297)
T ss_dssp             CCSTTTHHHHHHHCHHHHHHHHHHCCEECHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHH-------------
T ss_pred             cccccccccccccCccceeeccccccccchHhhhhhccccccCchHHhhHHHHHHhhhhccCCHHHH-------------
Confidence            96   89999999999999999999999999999999999999999999999999999999876432             


Q ss_pred             HHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCCC
Q 004972          219 EAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP  293 (721)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~aF~~~r~~~~~~  293 (721)
                                             ..+|++++.. ...+.+....|.+.+..++.|+|++|+++||++||+|++.|
T Consensus       242 -----------------------~~~K~~~~~~-~~~~~~~~~~~~~~~~~~~~s~d~~Egv~AF~eKR~P~f~~  292 (297)
T d1q52a_         242 -----------------------RMLKFAFNLL-DDGLVGQQLFAGEATRLAYMTDEAVEGRDAFLQKRPPDWSP  292 (297)
T ss_dssp             -----------------------HHHHHHHHHT-TTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCTT
T ss_pred             -----------------------HHHHHHHHHh-hcChHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCCCCC
Confidence                                   2344555443 33455566678888999999999999999999999988755

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=100.00  E-value=8e-44  Score=362.49  Aligned_cols=240  Identities=22%  Similarity=0.298  Sum_probs=210.9

Q ss_pred             CcEEEEEe-cCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCC-CCcCCCCchhhhhccCCCcccc
Q 004972            4 PRVTMEVG-NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG-RFSGGFDINVFQKVHGAGDVSL   81 (721)
Q Consensus         4 ~~v~~~~~-~~~v~~i~l~~p~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~-~F~aG~Dl~~~~~~~~~~~~~~   81 (721)
                      +.+.++.+ ++||++||||||+.|++|.+|+.+|.++++.+++|+++++|||+|.|+ +||+|+|++++.... ......
T Consensus         2 ~~ilve~~~~~gIa~itln~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~~Fs~G~Dl~~~~~~~-~~~~~~   80 (249)
T d1sg4a1           2 QRVLVEPDAGAGVAVMKFKNPPVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRS-PAHYAG   80 (249)
T ss_dssp             CSEEEEEETTTTEEEEEECCTTTTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCC-HHHHHH
T ss_pred             CcEEEEEECCCCEEEEEECCCCcCCCCHHHHHHHHHHHHHHHhCCCccEEEEEeccceeEecccccccccccc-cccccc
Confidence            56777775 578999999999999999999999999999999999999999999886 699999999985432 122333


Q ss_pred             cchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceE--eCcccccCcccc---ccccccccCHHHH
Q 004972           82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL--GLPELTLGVIPG---TQRLPRLVGLSKA  156 (721)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~--~~pe~~~Gl~P~---~~~l~r~~G~~~a  156 (721)
                      +....++++ ..+.++||||||+|||+|+|||++|+++|||||++++++|  ++||+++|++|+   +++|++++|..++
T Consensus        81 ~~~~~~~~~-~~l~~~~kpvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~pe~~~Gl~p~~g~~~~l~~~iG~~~a  159 (249)
T d1sg4a1          81 YWKAVQELW-LRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAA  159 (249)
T ss_dssp             HHHHHHHHH-HHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCHHHH
T ss_pred             cchhhHHHH-HhhhcCccccchhhcccccccccccccccccceeeccccccccccccccccccccccccccccccccccc
Confidence            444455666 6799999999999999999999999999999999999876  789999999996   8999999999999


Q ss_pred             HHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhCC
Q 004972          157 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP  236 (721)
Q Consensus       157 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (721)
                      ++++++|++++|++|+++||||+|+|++++++++.++++++++.++.++                               
T Consensus       160 ~~lll~g~~~~a~~A~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~-------------------------------  208 (249)
T d1sg4a1         160 ERALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALSAIAQWMAIPDHAR-------------------------------  208 (249)
T ss_dssp             HHHHHHTCCBCHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHH-------------------------------
T ss_pred             cccccccccccHHHHHhhccccccCChHHHHHHHHHHHHHHHcCCHHHH-------------------------------
Confidence            9999999999999999999999999999999999999999999886432                               


Q ss_pred             CChhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 004972          237 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVH  281 (721)
Q Consensus       237 ~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~i~  281 (721)
                           ..+|+.++......+.+.++.|.+.|...+.+++.+++|+
T Consensus       209 -----~~~K~~~~~~~~~~l~~~~~~e~~~~~~~~~~e~~~~~le  248 (249)
T d1sg4a1         209 -----QLTKAMMRKATASRLVTQRDADVQNFVSFISKDSIQKSLQ  248 (249)
T ss_dssp             -----HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSHHHHHHHT
T ss_pred             -----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCHHHHHhcC
Confidence                 2446677777777788889999999999999999998874

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

Probab=100.00  E-value=3.5e-43  Score=353.46  Aligned_cols=197  Identities=27%  Similarity=0.382  Sum_probs=177.4

Q ss_pred             EEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CCCcCCCCchhhhhccCCCcccccch
Q 004972            7 TMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVSLMPD   84 (721)
Q Consensus         7 ~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~~~~   84 (721)
                      .++.++|+|++|||||| +.|++|.+|+.+|.+++++++.|+++|+|||+|.| ++||+|+|++++...........+..
T Consensus         2 ~~~~~~d~I~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~i~~vVl~~~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~   81 (230)
T d2a7ka1           2 VFEENSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWID   81 (230)
T ss_dssp             EEEEEETTEEEEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHHH
T ss_pred             EEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCcccccceeccchhhhhhhcccccccccccccccccchh
Confidence            35555889999999999 57999999999999999999999999999999876 68999999999876543333334444


Q ss_pred             HHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc--ccccccccCHHHHHHHHHc
Q 004972           85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG--TQRLPRLVGLSKAIEMMLL  162 (721)
Q Consensus        85 ~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~--~~~l~r~~G~~~a~~l~lt  162 (721)
                      ...+++ ..+.++|||+||+|||+|+|||++|+++|||||++++++|++||+++|++|+  +.+|++++|..+|++++++
T Consensus        82 ~~~~~~-~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~l~~~iG~~~a~~l~l~  160 (230)
T d2a7ka1          82 RVIDLY-QAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGAAILGFTHGFSTMQEIIYQ  160 (230)
T ss_dssp             HHHHHH-HHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             hhhhhh-hcccchhcceeeecccccccccccchhccchhhccccchhhhccccccccccccccccccccccccccccccc
Confidence            555666 6799999999999999999999999999999999999999999999999998  7789999999999999999


Q ss_pred             CCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchh
Q 004972          163 SKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPW  204 (721)
Q Consensus       163 g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~  204 (721)
                      |++++|+||+++||||+|||++++++++.++|+++++.||.+
T Consensus       161 g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a  202 (230)
T d2a7ka1         161 CQSLDAPRCVDYRLVNQVVESSALLDAAITQAHVMASYPASA  202 (230)
T ss_dssp             CCCBCHHHHHHHTCCSEEECHHHHHHHHHHHHHHHHTSCHHH
T ss_pred             cccchHHHHHHhhhcccCCChHHHHHHHHHHHHHHHcCCHHH
Confidence            999999999999999999999999999999999999988753

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.4e-41  Score=344.49  Aligned_cols=182  Identities=24%  Similarity=0.286  Sum_probs=158.6

Q ss_pred             CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcc--
Q 004972            3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV--   79 (721)
Q Consensus         3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~--   79 (721)
                      ++.|++++ +++|++||||||+ .|++|.+|+.+|.++++++++|+++++|||||.|++||+|+||+++.........  
T Consensus         4 ~e~i~~~~-~~~v~~Itlnrp~~~Na~~~~~~~el~~al~~~~~d~~v~~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~   82 (266)
T d1pjha_           4 NEKISYRI-EGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKY   82 (266)
T ss_dssp             BTTEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCCBCHHHHHC-------CC
T ss_pred             CCeEEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeccccccccchhHHHHHhccccccccc
Confidence            57899999 7999999999996 6999999999999999999999999999999999999999999998754322111  


Q ss_pred             --------cccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEee-CCceEeCcccccCcccc---cccc
Q 004972           80 --------SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA-PKTQLGLPELTLGVIPG---TQRL  147 (721)
Q Consensus        80 --------~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~-~~a~~~~pe~~~Gl~P~---~~~l  147 (721)
                              ..+......++ ..+.++||||||+|||+|+|||++|+++||||||+ ++++|++||+++|++|+   ++++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~-~~l~~~~kP~IAav~G~a~GgG~~lal~~D~~ia~~~~~~~~~pe~~lGl~p~~g~~~~l  161 (266)
T d1pjha_          83 PSETSKWVSNFVARNVYVT-DAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSL  161 (266)
T ss_dssp             SSHHHHHHHHTHHHHHHHH-HHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHHHH
T ss_pred             cchhhHHHHHHHHHHHHHH-HHHHhcchhhhhhhhcccccccccchhccchhhhhhcccccccccccccccccccccccc
Confidence                    11222333445 66899999999999999999999999999999997 56889999999999996   8999


Q ss_pred             ccccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcCCchH
Q 004972          148 PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL  186 (721)
Q Consensus       148 ~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l  186 (721)
                      +|++|..+|++|++||++++|+||+++||||+|+++++.
T Consensus       162 ~r~~g~~~a~~llltg~~~~a~eA~~~Glv~~v~~~~~~  200 (266)
T d1pjha_         162 PLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSS  200 (266)
T ss_dssp             HHHHCHHHHHHHHHTTCCEEHHHHHHTTCCSEECCCCTT
T ss_pred             ccccccchhhhhhccCCcCCHHHHHHCCCEeEeeCchhh
Confidence            999999999999999999999999999999999976544

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=100.00  E-value=1.3e-40  Score=338.53  Aligned_cols=201  Identities=20%  Similarity=0.285  Sum_probs=179.2

Q ss_pred             CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcc
Q 004972            1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV   79 (721)
Q Consensus         1 m~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   79 (721)
                      |.|++|++++ +++|++||||||+ .|++|.+|+.+|.++++++++|+++++|||||.|++||+|+|++++..... ...
T Consensus        10 ~~y~~i~~~~-~~~v~~itln~p~~~Nal~~~~~~el~~al~~~~~d~~v~~vvl~g~g~~FsaG~Dl~~~~~~~~-~~~   87 (249)
T d1szoa_          10 QKYENIRLER-DGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNLGTP-HDW   87 (249)
T ss_dssp             TSCTTEEEEE-ETTEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCEECGGGSCCSSH-HHH
T ss_pred             CCCCeEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcceEeeecccccccccchhhhhhcccc-cch
Confidence            3578899999 7899999999996 699999999999999999999999999999999999999999999854221 223


Q ss_pred             cccchHHHHHHHHHHhhCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEe-CcccccCcccc---ccccccccCHHH
Q 004972           80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLG-LPELTLGVIPG---TQRLPRLVGLSK  155 (721)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~-~pe~~~Gl~P~---~~~l~r~~G~~~  155 (721)
                      ..+....+.++ +.+.++||||||+|||+|. ||++|+++||+||++++++|. +||+++|++|+   +++++|++|..+
T Consensus        88 ~~~~~~~~~l~-~~i~~~~~pvIa~v~g~~~-GG~~l~l~~D~ria~~~a~f~~~pe~~~g~~p~~g~~~~l~r~ig~~~  165 (249)
T d1szoa_          88 DEIIFEGQRLL-NNLLSIEVPVIAAVNGPVT-NAPEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNR  165 (249)
T ss_dssp             HHHHHHHHHHH-HHHHHCCSCEEEEECSCBC-SSTHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCHHH
T ss_pred             hhhhhhhhhhh-hhcccCcccceeeeccccc-cccccccccccccccCCcEEEEeeccccccccccccccccccccCccc
Confidence            33334455666 6799999999999999885 577999999999999999995 79999999997   899999999999


Q ss_pred             HHHHHHcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhcCchhh
Q 004972          156 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWI  205 (721)
Q Consensus       156 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~~~~~~  205 (721)
                      +++|+++|++++|+||+++||||+|||++++.+++.++++++++.|+.++
T Consensus       166 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~  215 (249)
T d1szoa_         166 GRYFLLTGQELDARTALDYGAVNEVLSEQELLPRAWELARGIAEKPLLAR  215 (249)
T ss_dssp             HHHHHHTTCEEEHHHHHHHTSCSEEECHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             eeeecccCCCCCHHHHHHhCCcCcccCHHHHHHHHHHHHHHHHcCCHHHH
Confidence            99999999999999999999999999999999999999999999987543

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=100.00  E-value=4.2e-38  Score=305.06  Aligned_cols=185  Identities=32%  Similarity=0.626  Sum_probs=180.7

Q ss_pred             CCceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcccc
Q 004972          303 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  382 (721)
Q Consensus       303 ~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l  382 (721)
                      ++|+||+|||+|.||++||..++++|++|++||++++.++++.+++.+.+...+.++.+++...+..++++..+++++++
T Consensus         2 ~~I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   81 (186)
T d1wdka3           2 KDVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDF   81 (186)
T ss_dssp             CCCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTG
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeecccccccc
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCCC
Q 004972          383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS  462 (721)
Q Consensus       383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t~  462 (721)
                      .+||+||||+||++++|+++|++|++++++++||+||||+++++++++.+.+|+||+|+|||||++.+++|||++++.|+
T Consensus        82 ~~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~~la~~~~~p~r~~g~Hf~nP~~~~~lVEiv~~~~T~  161 (186)
T d1wdka3          82 GNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSS  161 (186)
T ss_dssp             GGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGGGCSCGGGEEEEECCSSTTTCCEEEEEECSSCC
T ss_pred             cccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccHHHHHHhccCchheEeeccccCcccCCeEEECCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCeeEEEcCCC
Q 004972          463 AQVILDLMTVGKIIKKVPVVVGNCT  487 (721)
Q Consensus       463 ~e~~~~~~~l~~~lG~~~v~v~d~~  487 (721)
                      +++++.+..|++.+||.|++++|.|
T Consensus       162 ~~~~~~~~~~~~~lgk~pv~v~d~P  186 (186)
T d1wdka3         162 DLAVATTVAYAKKMGKNPIVVNDCP  186 (186)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEESCT
T ss_pred             HHHHHHHHHHHHHcCCEEEEEeccC
Confidence            9999999999999999999999987

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.3e-38  Score=305.03  Aligned_cols=185  Identities=33%  Similarity=0.521  Sum_probs=175.4

Q ss_pred             CCceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCC-----HHHHHHhhcCceecc
Q 004972          303 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT-----QDKANNALKMLKGVL  377 (721)
Q Consensus       303 ~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~-----~~~~~~~~~~i~~~~  377 (721)
                      +.|+||+|||+|.||++||..++++|++|++||++++.++++.+++++.+...++++...     ....+..++++..++
T Consensus         2 ~~IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~   81 (192)
T d1f0ya2           2 IIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATST   81 (192)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEES
T ss_pred             ceeEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccc
Confidence            468999999999999999999999999999999999999999999999999999988874     344566778999999


Q ss_pred             Cc-cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEe
Q 004972          378 DY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV  456 (721)
Q Consensus       378 ~~-~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv  456 (721)
                      ++ +++++||+|||||||++++|+++|+++++.+++++||+||||++++++++..+.+|+||+|+|||||++.+|+|||+
T Consensus        82 d~~~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~HffnP~~~~~lVEIv  161 (192)
T d1f0ya2          82 DAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVI  161 (192)
T ss_dssp             CHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEEEEE
T ss_pred             hhHhhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccccchhhhhccCHhHEEeeccccccCcccEEEEc
Confidence            97 66999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCeeEEEcCCC
Q 004972          457 RTERTSAQVILDLMTVGKIIKKVPVVVGNCT  487 (721)
Q Consensus       457 ~~~~t~~e~~~~~~~l~~~lG~~~v~v~d~~  487 (721)
                      +++.|++++++.+..|++.+||.|++++|.|
T Consensus       162 ~g~~T~~~~i~~~~~~~~~lgk~pV~v~D~P  192 (192)
T d1f0ya2         162 KTPMTSQKTFESLVDFSKALGKHPVSCKDTP  192 (192)
T ss_dssp             CCTTCCHHHHHHHHHHHHHTTCEEEEECSCT
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCEEEEeeccC
Confidence            9999999999999999999999999999987

>d1wdka2 a.100.1.3 (A:621-715) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Fatty oxidation complex alpha subunit, C-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.93  E-value=9.4e-27  Score=196.90  Aligned_cols=94  Identities=30%  Similarity=0.588  Sum_probs=90.7

Q ss_pred             cChHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCCCCCCC
Q 004972          615 VTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGNFFKPS  694 (721)
Q Consensus       615 ~~~~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~  694 (721)
                      +++++|+||++++++|||++|++|||+.+++|||.++++|+|||+|+||||+++|.+|+++++++++.+. ++|++|+|+
T Consensus         2 ~~d~~IvnRll~~~~nEa~~~leeGia~~~~diD~~~~~g~GfP~~~gGp~~~~D~~G~~~~~~~~~~l~-~~g~r~~p~   80 (95)
T d1wdka2           2 VTDEDIINWMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVALADQYA-ELGALYHPT   80 (95)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHTCCCGGGCCHHHHHHHHCHHHHHHHHHHTG-GGCGGGCCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHccCChhhCcHHHHHHHHCHHHHHHHHHHHH-hhCCCCCCC
Confidence            6789999999999999999999999998999999999999999999999999999999999999999885 689999999


Q ss_pred             HHHHHHHHcCCCCcC
Q 004972          695 RFLEERATKGIPLSA  709 (721)
Q Consensus       695 ~~l~~~~~~g~~f~~  709 (721)
                      ++|++|+|+|+|||.
T Consensus        81 ~~L~~~~~~g~~Fyg   95 (95)
T d1wdka2          81 AKLREMAKNGQSFFG   95 (95)
T ss_dssp             HHHHHHHHTTCCSCC
T ss_pred             HHHHHHHHhCcCCCC
Confidence            999999999999994

>d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Fatty oxidation complex alpha subunit, C-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.93  E-value=1.2e-26  Score=207.27  Aligned_cols=103  Identities=41%  Similarity=0.714  Sum_probs=90.1

Q ss_pred             chhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHHhhchHHHHHHHHHHHHhCCCC--CCCcHHHHHHH
Q 004972          488 GFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR--SFQSPLVDLLL  565 (721)
Q Consensus       488 gfi~nRl~~~~~~Ea~~l~~~Gv~~~~ID~a~~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~--~~~~~~l~~~v  565 (721)
                      |||+||++.++++||++++++|++|++||+++..+|||+|||+++|.+|||+++++.+++++.++++  ..+++++++||
T Consensus         1 GFi~NRi~~~~~~ea~~ll~eG~~~~~ID~a~~~~G~p~Gpf~l~D~vGLd~~~~v~~~~~~~~~~~~~~~~~~~l~~mv   80 (124)
T d1wdka1           1 GFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAIDALY   80 (124)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSSCHHHHHHHHCHHHHHHHHHHHHHHCHHHHCCSSCCHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCCCHHHHHHhcchHHHHHHHHHHHHhcCcccccCcchHHHHHH
Confidence            8999999999999999999999999999999988999999999999999999999999999888654  33678999999


Q ss_pred             HcCCCCcccCccccccCCCCCCCCC
Q 004972          566 KSGRNGKANGKGLYTYEKGSKPKPD  590 (721)
Q Consensus       566 ~~G~~G~k~g~GfY~y~~~~~~~~~  590 (721)
                      ++|++|+|||+|||+|+++++...+
T Consensus        81 ~~g~lG~Ktg~GFY~y~~~~~~~~~  105 (124)
T d1wdka1          81 EAKRLGQKNGKGFYAYEADKKGKQK  105 (124)
T ss_dssp             HTTCCBTTTTBSSSEEC-------C
T ss_pred             HcCCccccCCcEeeEcCCCCCCCCC
Confidence            9999999999999999875543333

>d1f0ya1 a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.2e-25  Score=193.63  Aligned_cols=95  Identities=33%  Similarity=0.562  Sum_probs=89.5

Q ss_pred             chhhhhhhhHHHHHHHHHHHcCC-CHHHHHHHH-HhcCCCccHHHHHHhhchHHHHHHHHHHHHhCCCC--CCCcHHHHH
Q 004972          488 GFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQLLDLAGYGVAAATSKEFDKAFPDR--SFQSPLVDL  563 (721)
Q Consensus       488 gfi~nRl~~~~~~Ea~~l~~~Gv-~~~~ID~a~-~~~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~--~~~~~~l~~  563 (721)
                      |||+||++.++++||++++++|+ +|++||.++ .++|+|+|||+++|.+|||++.++++++.+.++++  +.|++++++
T Consensus         1 GFi~NRil~~~~~ea~~ll~eG~a~~~~iD~~~~~~~G~p~Gpf~~~D~vGld~~~~v~~~~~~~~~~~~~~~~~~~l~~   80 (99)
T d1f0ya1           1 GFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMDAENPLHQPSPSLNK   80 (99)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHCCSSCHHHHHHHHCHHHHHHHHHHHHHTTTTCGGGCCCHHHHH
T ss_pred             CeehHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcccCCCCchHHHHHhhcHHHHHHHHHHHHHhcccccccCCCHHHHH
Confidence            89999999999999999999997 999999999 78999999999999999999999999999887663  348899999


Q ss_pred             HHHcCCCCcccCccccccC
Q 004972          564 LLKSGRNGKANGKGLYTYE  582 (721)
Q Consensus       564 ~v~~G~~G~k~g~GfY~y~  582 (721)
                      |+++|++|+|||+|||+|+
T Consensus        81 mv~~g~lG~ksg~GfY~Y~   99 (99)
T d1f0ya1          81 LVAENKFGKKTGEGFYKYK   99 (99)
T ss_dssp             HHHTTCCBTTTTBSSSBCC
T ss_pred             HHHcCCCcccCCCcccccC
Confidence            9999999999999999994

>d1f0ya1 a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3.5e-20  Score=159.03  Aligned_cols=90  Identities=26%  Similarity=0.362  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCC--CCCCCH
Q 004972          618 KEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN--FFKPSR  695 (721)
Q Consensus       618 ~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~--~~~p~~  695 (721)
                      ++|+||++.+++|||++|++||++ ||++||.+++.++|||.   |||+++|.+|+|+++++++.+.+..++  ++.|++
T Consensus         1 GFi~NRil~~~~~ea~~ll~eG~a-~~~~iD~~~~~~~G~p~---Gpf~~~D~vGld~~~~v~~~~~~~~~~~~~~~~~~   76 (99)
T d1f0ya1           1 GFIVNRLLVPYLMEAIRLYERGDA-SKEDIDTAMKLGAGYPM---GPFELLDYVGLDTTKFIVDGWHEMDAENPLHQPSP   76 (99)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHHCCSS---CHHHHHHHHCHHHHHHHHHHHHHTTTTCGGGCCCH
T ss_pred             CeehHHHHHHHHHHHHHHHHHcCC-CHHHHHHHhhcccCCCC---chHHHHHhhcHHHHHHHHHHHHHhcccccccCCCH
Confidence            468999999999999999999998 89999999999999998   999999999999999999999988764  789999


Q ss_pred             HHHHHH-------HcCCCCcCCC
Q 004972          696 FLEERA-------TKGIPLSAPV  711 (721)
Q Consensus       696 ~l~~~~-------~~g~~f~~~~  711 (721)
                      +|++|+       |+|+|||+|.
T Consensus        77 ~l~~mv~~g~lG~ksg~GfY~Y~   99 (99)
T d1f0ya1          77 SLNKLVAENKFGKKTGEGFYKYK   99 (99)
T ss_dssp             HHHHHHHTTCCBTTTTBSSSBCC
T ss_pred             HHHHHHHcCCCcccCCCcccccC
Confidence            999999       7899999993

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=99.75  E-value=9.3e-18  Score=158.18  Aligned_cols=153  Identities=17%  Similarity=0.168  Sum_probs=119.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  385 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  385 (721)
                      +||+|||+|.||+++|..|.++|++|++||++++.++++.+           .+.+           -...++.+.+++|
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~-----------~~~~-----------~~~~~~~~~~~~~   58 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVE-----------RQLV-----------DEAGQDLSLLQTA   58 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TTSC-----------SEEESCGGGGTTC
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHH-----------hhcc-----------ceeeeeccccccc
Confidence            48999999999999999999999999999999998777532           2211           1335566889999


Q ss_pred             CEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCC------------CCee
Q 004972          386 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHV------------MPLL  453 (721)
Q Consensus       386 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~------------~~lv  453 (721)
                      |+||+|+|  .....++++++.+.++++++|++.+|. .............++++.|+..++..            ...+
T Consensus        59 DiIilavp--~~~~~~vl~~l~~~l~~~~iv~~~~s~-~~~~~~~~~~~~~~~~~~h~~~~~~~~g~~~a~~~l~~~~~~  135 (165)
T d2f1ka2          59 KIIFLCTP--IQLILPTLEKLIPHLSPTAIVTDVASV-KTAIAEPASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPY  135 (165)
T ss_dssp             SEEEECSC--HHHHHHHHHHHGGGSCTTCEEEECCSC-CHHHHHHHHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEE
T ss_pred             ccccccCc--Hhhhhhhhhhhhhhcccccceeecccc-chHHHHHHHHhhcccccceeeecccccchhhhcccccCCCeE
Confidence            99999999  788889999999999999999776554 33222222222347899999765422            2345


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHcCCeeEEE
Q 004972          454 EIVRTERTSAQVILDLMTVGKIIKKVPVVV  483 (721)
Q Consensus       454 Eiv~~~~t~~e~~~~~~~l~~~lG~~~v~v  483 (721)
                      -+++...++++.++.+.++++.+|.+++.|
T Consensus       136 il~~~~~~~~~~~~~v~~l~~~lG~~v~~c  165 (165)
T d2f1ka2         136 VLTPTEYTDPEQLACLRSVLEPLGVKIYLC  165 (165)
T ss_dssp             EEEECTTCCHHHHHHHHHHHGGGTCEEEEC
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHhCCEEEeC
Confidence            577888899999999999999999998764

>d1wdka2 a.100.1.3 (A:621-715) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Fatty oxidation complex alpha subunit, C-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.73  E-value=3.3e-18  Score=143.97  Aligned_cols=82  Identities=15%  Similarity=0.324  Sum_probs=76.2

Q ss_pred             hhhhhhhHHHHHHHHHHHcCC--CHHHHHHHH-HhcCCCc---cHHHHHHhhchHHHHHHHHHHHHhCCCCCCCcHHHHH
Q 004972          490 AVNRAFFPYSQSARLLVSLGV--DVFRIDSAI-RSFGLPI---GPFQLLDLAGYGVAAATSKEFDKAFPDRSFQSPLVDL  563 (721)
Q Consensus       490 i~nRl~~~~~~Ea~~l~~~Gv--~~~~ID~a~-~~~G~p~---Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~~~~~~l~~  563 (721)
                      |+||++.+++|||++++++|+  +++|||.++ .++|||+   |||+++|.+|++.++++++.+. ++++++.|+++|++
T Consensus         7 IvnRll~~~~nEa~~~leeGia~~~~diD~~~~~g~GfP~~~gGp~~~~D~~G~~~~~~~~~~l~-~~g~r~~p~~~L~~   85 (95)
T d1wdka2           7 IINWMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVALADQYA-ELGALYHPTAKLRE   85 (95)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHTCCCGGGCCHHHHHHHHCHHHHHHHHHHTG-GGCGGGCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHccCChhhCcHHHHHHHHCHHHHHHHHHHHH-hhCCCCCCCHHHHH
Confidence            899999999999999999996  899999999 9999999   9999999999999999999874 57888789999999


Q ss_pred             HHHcCCCCcccCcccc
Q 004972          564 LLKSGRNGKANGKGLY  579 (721)
Q Consensus       564 ~v~~G~~G~k~g~GfY  579 (721)
                      |+++|       +|||
T Consensus        86 ~~~~g-------~~Fy   94 (95)
T d1wdka2          86 MAKNG-------QSFF   94 (95)
T ss_dssp             HHHTT-------CCSC
T ss_pred             HHHhC-------cCCC
Confidence            98654       6999

>d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Fatty oxidation complex alpha subunit, C-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.70  E-value=5.8e-18  Score=150.48  Aligned_cols=92  Identities=14%  Similarity=0.204  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHccCCCCCCCcHhHHHHHhCHHHHHHHHHHHHHhhCC--CCCCCH
Q 004972          618 KEIVEMILFPVVNESCRVLEEGIVVRASDLDDASVLGMSFPSYRGGIVFWADAVGANYVYTSLKKWSQLYGN--FFKPSR  695 (721)
Q Consensus       618 ~~i~~r~~~~~~~ea~~~l~~gv~~~~~~iD~~~~~g~g~~~~~~Gp~~~~d~~G~~~~~~~~~~~~~~~~~--~~~p~~  695 (721)
                      ++|.||++.++++||++++++|+  ++++||.++. ++|||+   |||+++|.+|+|+++++++.+.+.+++  .+.|++
T Consensus         1 GFi~NRi~~~~~~ea~~ll~eG~--~~~~ID~a~~-~~G~p~---Gpf~l~D~vGLd~~~~v~~~~~~~~~~~~~~~~~~   74 (124)
T d1wdka1           1 GFLVNRVLFPYFGGFAKLVSAGV--DFVRIDKVME-KFGWPM---GPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRS   74 (124)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHTTC--CHHHHHHHHH-HHTCSS---CHHHHHHHHCHHHHHHHHHHHHHHCHHHHCCSSCC
T ss_pred             CchHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHh-hccCCC---CHHHHHHhcchHHHHHHHHHHHHhcCcccccCcch
Confidence            47899999999999999999996  5999999985 899998   999999999999999999999888764  577888


Q ss_pred             HHHHHH-------HcCCCCcCCCCCCc
Q 004972          696 FLEERA-------TKGIPLSAPVSSSS  715 (721)
Q Consensus       696 ~l~~~~-------~~g~~f~~~~~~~~  715 (721)
                      ++++|+       |+|+|||+|++..+
T Consensus        75 ~l~~mv~~g~lG~Ktg~GFY~y~~~~~  101 (124)
T d1wdka1          75 AIDALYEAKRLGQKNGKGFYAYEADKK  101 (124)
T ss_dssp             HHHHHHHTTCCBTTTTBSSSEEC----
T ss_pred             HHHHHHHcCCccccCCcEeeEcCCCCC
Confidence            999999       78999999966543

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.69  E-value=1.2e-16  Score=151.21  Aligned_cols=153  Identities=16%  Similarity=0.162  Sum_probs=117.8

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc--c
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY--S  380 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~  380 (721)
                      |+||+|||+|.||++||..|.+.|+  +|++||++++.++.+.+           .+.++           ...++.  .
T Consensus         1 Mk~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~-----------~~~~~-----------~~~~~~~~~   58 (171)
T d2g5ca2           1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD-----------LGIID-----------EGTTSIAKV   58 (171)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH-----------TTSCS-----------EEESCGGGG
T ss_pred             CCEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHH-----------hhcch-----------hhhhhhhhh
Confidence            5789999999999999999999996  78999999999887642           22211           122333  3


Q ss_pred             ccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH--HHHhcccCCCCcEEEecCCCCCC----------
Q 004972          381 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTSSQDRIIGAHFFSPAH----------  448 (721)
Q Consensus       381 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i--~~l~~~~~~~~r~ig~h~~~p~~----------  448 (721)
                      ...++|+||+|+|  ++...+++.++.+++++++++++.+|+...  ..+...+  +.+|++.||.....          
T Consensus        59 ~~~~~dlIila~p--~~~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~--~~~~i~~hPm~G~e~sG~~~a~~~  134 (171)
T d2g5ca2          59 EDFSPDFVMLSSP--VRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENIL--GKRFVGGHPIAGTEKSGVEYSLDN  134 (171)
T ss_dssp             GGTCCSEEEECSC--HHHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHH--GGGEECEEEECCCSCCSGGGCCSS
T ss_pred             hccccccccccCC--chhhhhhhhhhhccccccccccccccccHHHHHHHHHhh--cccccccccccccccccHHHHHHH
Confidence            3468999999999  888889999999999999999987775443  3333333  45899999954331          


Q ss_pred             --CCCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEE
Q 004972          449 --VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV  483 (721)
Q Consensus       449 --~~~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v  483 (721)
                        .+..+-++++..++++.++.++.|++.+|.+++.+
T Consensus       135 Lf~g~~~il~p~~~~~~~~~~~v~~~~~~lG~~v~~M  171 (171)
T d2g5ca2         135 LYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEYM  171 (171)
T ss_dssp             TTTTCEEEECCCSSSCHHHHHHHHHHHHHTTCEEEEC
T ss_pred             hhCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEeC
Confidence              23445688899999999999999999999988764

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=99.62  E-value=1.8e-15  Score=140.09  Aligned_cols=148  Identities=12%  Similarity=0.065  Sum_probs=122.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCC-CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  384 (721)
                      +||+|||+|.||.+|+..|.++| ++|++||+++++++...++                       ..+...++.+++.+
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~-----------------------~~~~~~~~~~~v~~   57 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKE-----------------------LGVETSATLPELHS   57 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHH-----------------------TCCEEESSCCCCCT
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhh-----------------------cccccccccccccc
Confidence            48999999999999999988777 8999999999987765321                       12556677788899


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEe-cCCCCCH
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RTERTSA  463 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv-~~~~t~~  463 (721)
                      ||+||+||+  ++...++++++   .+.+.+++|..++.+++.+.+.+....+++..+|+.|......+..+ .+...++
T Consensus        58 ~Div~lavk--P~~~~~v~~~l---~~~~~~viS~~ag~~~~~l~~~l~~~~~iir~mpn~p~~~~~g~t~~~~~~~~~~  132 (152)
T d1yqga2          58 DDVLILAVK--PQDMEAACKNI---RTNGALVLSVAAGLSVGTLSRYLGGTRRIVRVMPNTPGKIGLGVSGMYAEAEVSE  132 (152)
T ss_dssp             TSEEEECSC--HHHHHHHHTTC---CCTTCEEEECCTTCCHHHHHHHTTSCCCEEEEECCGGGGGTCEEEEEECCTTSCH
T ss_pred             cceEEEecC--HHHHHHhHHHH---hhcccEEeecccCCCHHHHHHHhCcCcceEeecccchhHhcCCcEEEEeCCCCCH
Confidence            999999997  66556665554   34577889999999999999998877889999999999998887755 5667789


Q ss_pred             HHHHHHHHHHHHcCCeeE
Q 004972          464 QVILDLMTVGKIIKKVPV  481 (721)
Q Consensus       464 e~~~~~~~l~~~lG~~~v  481 (721)
                      +..+.+..+++.+|+...
T Consensus       133 ~~~~~v~~l~~~~G~~~~  150 (152)
T d1yqga2         133 TDRRIADRIMKSVGLTVW  150 (152)
T ss_dssp             HHHHHHHHHHHTTEEEEE
T ss_pred             HHHHHHHHHHHhCCCEEE
Confidence            999999999999997654

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.58  E-value=1.3e-15  Score=142.43  Aligned_cols=152  Identities=17%  Similarity=0.186  Sum_probs=107.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      +||||||+|.||.+||.+|+++|++|++||+++++++...+           .+             ....++. +.+++
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~-----------~~-------------~~~~~~~~e~~~~   56 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIA-----------AG-------------AETASTAKAIAEQ   56 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TT-------------CEECSSHHHHHHH
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHH-----------hh-------------hhhcccHHHHHhC
Confidence            48999999999999999999999999999999998776532           11             2334444 66899


Q ss_pred             CCEEEEcccCChHHHHHHH--HHHHhhCCCCeEEEecCCCCCHH--HHhcccC-CCCcEEEecCCCCC---CCCCeeEEe
Q 004972          385 VDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLLEIV  456 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~--~~l~~~~~~~~ii~s~ts~~~i~--~l~~~~~-~~~r~ig~h~~~p~---~~~~lvEiv  456 (721)
                      ||+||.|||++.++...++  ..+.+.++++++|++.++..+-.  ++++.+. ..-+|+.......+   ..+.+.-++
T Consensus        57 ~d~ii~~v~~~~~v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapv~gg~~~a~~g~l~~~~  136 (161)
T d1vpda2          57 CDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMV  136 (161)
T ss_dssp             CSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEE
T ss_pred             CCeEEEEcCCHHHHHHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCceecccccCChhHHhcCCeEEEE
Confidence            9999999997666555544  34788889999988755544322  3333332 23344444332111   222334344


Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004972          457 RTERTSAQVILDLMTVGKIIKKVPVVVG  484 (721)
Q Consensus       457 ~~~~t~~e~~~~~~~l~~~lG~~~v~v~  484 (721)
                      .|   +++.+++++++++.+|+++++++
T Consensus       137 gG---~~~~~~~~~~il~~~~~~i~~~G  161 (161)
T d1vpda2         137 GG---DKAIFDKYYDLMKAMAGSVVHTG  161 (161)
T ss_dssp             ES---CHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             cC---CHHHHHHHHHHHHHhcCceEECC
Confidence            44   68999999999999999998874

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=99.57  E-value=2.7e-15  Score=139.00  Aligned_cols=143  Identities=15%  Similarity=0.100  Sum_probs=110.9

Q ss_pred             CCCCCCCceeEEEEc-CCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceec
Q 004972          298 IGLKPRGVRKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV  376 (721)
Q Consensus       298 ~~~~~~~~~kI~VIG-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~  376 (721)
                      |.++...|+||+||| +|.||++||..|.++||+|++||++++....                                 
T Consensus         2 ~~~~~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~~---------------------------------   48 (152)
T d2pv7a2           2 FKTINSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAE---------------------------------   48 (152)
T ss_dssp             CCCSCTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHH---------------------------------
T ss_pred             CcccCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccccc---------------------------------
Confidence            445677899999999 8999999999999999999999998754221                                 


Q ss_pred             cCccccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH--HHHhcccCCCCcEEEecCCCCCCCC----
Q 004972          377 LDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTSSQDRIIGAHFFSPAHVM----  450 (721)
Q Consensus       377 ~~~~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i--~~l~~~~~~~~r~ig~h~~~p~~~~----  450 (721)
                         +.++++|+++.++|  ......++.++.+.+++++++++.+|..+.  ..+.+.  .+.+|++.||...+...    
T Consensus        49 ---~~~~~~~~v~~~~~--~~~~~~v~~~~~~~~~~~~iiiD~~Svk~~~~~~~~~~--~~~~~v~~hP~~Gp~~~~~~g  121 (152)
T d2pv7a2          49 ---SILANADVVIVSVP--INLTLETIERLKPYLTENMLLADLTSVKREPLAKMLEV--HTGAVLGLHPMFGADIASMAK  121 (152)
T ss_dssp             ---HHHTTCSEEEECSC--GGGHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHH--CSSEEEEEEECSCTTCSCCTT
T ss_pred             ---hhhhhccccccccc--hhhheeeeecccccccCCceEEEecccCHHHHHHHHHH--ccCCEEEecccCCCcccccCC
Confidence               23567999999999  777788999999999999999877665332  233332  35689999997666433    


Q ss_pred             CeeEEecCCCCCHHHHHHHHHHHHHcCCeeEE
Q 004972          451 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVV  482 (721)
Q Consensus       451 ~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~  482 (721)
                      ..+.++++  .+++.++++.++++.+|.+++.
T Consensus       122 ~~~v~~~g--~~~~~~~~~~~ll~~~Ga~v~e  151 (152)
T d2pv7a2         122 QVVVRCDG--RFPERYEWLLEQIQIWGAKIYQ  151 (152)
T ss_dssp             CEEEEEEE--ECGGGTHHHHHHHHHTTCEEEE
T ss_pred             cEEEEecC--CCHHHHHHHHHHHHHhCCEEEe
Confidence            33444444  4677899999999999998874

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.56  E-value=6.1e-15  Score=136.35  Aligned_cols=146  Identities=13%  Similarity=0.086  Sum_probs=117.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      +||||||+|+||++|+..|.++|++|++|++++++.+...+..                       .+..+.+. +.+++
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~-----------------------g~~~~~~~~~~~~~   57 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQL-----------------------ALPYAMSHQDLIDQ   57 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHH-----------------------TCCBCSSHHHHHHT
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhcccc-----------------------ceeeechhhhhhhc
Confidence            4899999999999999999999999999999998876543210                       13334444 66789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEe-cCCCCCH
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RTERTSA  463 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv-~~~~t~~  463 (721)
                      ||+||+||+  ++...+++    +.++++.+++|.++++.++++.+.+....+++..+|+.|.........+ .+..+++
T Consensus        58 ~dvIilavk--p~~~~~vl----~~l~~~~~iis~~agi~~~~l~~~l~~~~~ivr~mPN~~~~v~~g~~~~~~~~~~~~  131 (152)
T d2ahra2          58 VDLVILGIK--PQLFETVL----KPLHFKQPIISMAAGISLQRLATFVGQDLPLLRIMPNMNAQILQSSTALTGNALVSQ  131 (152)
T ss_dssp             CSEEEECSC--GGGHHHHH----TTSCCCSCEEECCTTCCHHHHHHHHCTTSCEEEEECCGGGGGTCEEEEEEECTTCCH
T ss_pred             cceeeeecc--hHhHHHHh----hhcccceeEecccccccHHHHHhhhcccccchhhccchhhhcCccceEEEeCCCCCH
Confidence            999999997  55555554    4467788888999999999999888777789999998888776665544 5777899


Q ss_pred             HHHHHHHHHHHHcCCee
Q 004972          464 QVILDLMTVGKIIKKVP  480 (721)
Q Consensus       464 e~~~~~~~l~~~lG~~~  480 (721)
                      +..+.++++++.+|+..
T Consensus       132 ~~~~~v~~l~~~~G~~~  148 (152)
T d2ahra2         132 ELQARVRDLTDSFGSTF  148 (152)
T ss_dssp             HHHHHHHHHHHTTEEEE
T ss_pred             HHHHHHHHHHHhCCCEE
Confidence            99999999999999753

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=99.52  E-value=3e-16  Score=154.28  Aligned_cols=204  Identities=13%  Similarity=0.099  Sum_probs=138.9

Q ss_pred             HHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCceeEEEEcCCC--CcHHHHH------HHHHCCCceEEEeCCHHHH-HHH
Q 004972          274 DTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGL--MGSGIAT------AHILNNIYVVLKEVNSEYL-LKG  344 (721)
Q Consensus       274 ~~~~~~i~aF~~~r~~~~~~~~~~~~~~~~~~~kI~VIG~G~--mG~~iA~------~la~~G~~V~l~d~~~~~~-~~~  344 (721)
                      .++..++..|..-....|..+++.    ....+++.++|+|+  ||.+|++      +|++.|+.|++.|.+++.. +.+
T Consensus        13 ~~~a~gi~~f~~~~~~~~~~~~~~----~a~~~~~~~~gagl~~~~~gi~~v~vs~~~fa~~g~~v~~~d~d~~~v~~~~   88 (242)
T d2b0ja2          13 THAAAGITNFMRACEVAKEVGKPE----IALTHSSITYGAELLHLVPDVKEVIVSDPCFAEEPGLVVIDEFDPKEVMEAH   88 (242)
T ss_dssp             HHHHHSSCCCHHHHHHHHHHTCGG----GGGCCHHHHHHHHHHHHCTTCCEEEEECGGGGSSSEEEECCCSCHHHHHHHH
T ss_pred             chhhhccHHHHHHHhhhccCCCCc----cceeeeeeeeeecHHhhhhchhhhhccchhhhhcCCeEEEEeCCHHHHHHHH
Confidence            455666677765555444443322    12346789999998  9999988      6899999999999997764 433


Q ss_pred             HH--------HHHHHHHhhhhcCCCCHHHH----HHhhcCceeccCc-cccCCCCEEEEcccCChHHHHHHHHHHHhhCC
Q 004972          345 IK--------TIEANVRGLVTRGKLTQDKA----NNALKMLKGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACP  411 (721)
Q Consensus       345 ~~--------~~~~~~~~~~~~g~~~~~~~----~~~~~~i~~~~~~-~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~  411 (721)
                      ..        .+++.+....+..+.++...    ......++.++|. +++++||+||+|+|+. +.+.+++++|.++++
T Consensus        89 ~~g~~~i~~p~l~~~v~~~~~~~~~~~~~~~~~~~pEe~Gv~v~~d~~Eav~~ADiII~~vP~~-~~v~~Vi~~I~~~l~  167 (242)
T d2b0ja2          89 LSGNPESIMPKIREVVKAKAKELPKPPKACIHLVHPEDVGLKVTSDDREAVEGADIVITWLPKG-NKQPDIIKKFADAIP  167 (242)
T ss_dssp             HTTCGGGTHHHHHHHHHHHHHTSCCTTTEEEESSCGGGGTCEEESCHHHHHTTCSEEEECCTTC-TTHHHHHHHHGGGSC
T ss_pred             hcCCchhhcchHHHHHHHHHHhccCCccchhhcCCHHHCCCEEECCHHHHHhcCCeEEEeeecH-HHHHHHHHHHHhhCC
Confidence            32        12223333333332111100    0000235566666 7899999999999954 678899999999999


Q ss_pred             CCeEEEecCCCCC--HHHHhcccC-CCCcEEEecCCCCCCCCCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEEE
Q 004972          412 PHCILATNTSTID--LNIVGEKTS-SQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV  483 (721)
Q Consensus       412 ~~~ii~s~ts~~~--i~~l~~~~~-~~~r~ig~h~~~p~~~~~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~v  483 (721)
                      +++||++.+|..+  ..++.+.+. ...+|++.||.+++.......++.+ .+++|.++++.++++.+|+.++++
T Consensus       168 ~g~Iiid~STi~~~~~~~l~e~l~~kgi~vi~~hp~a~pe~~g~~li~~~-~aseE~iekv~elles~Gk~~~vv  241 (242)
T d2b0ja2         168 EGAIVTHACTIPTTKFAKIFKDLGREDLNITSYHPGCVPEMKGQVYIAEG-YASEEAVNKLYEIGKIARGKAFKM  241 (242)
T ss_dssp             TTCEEEECSSSCHHHHHHHHHHTTCTTSEEEECBCSSCTTTCCCEEEEES-SSCHHHHHHHHHHHHHHHSCEEEE
T ss_pred             CCcEEEecCCCcHHHHHHHHHhcccCCCEEECCCccCcCccccceEEecC-CCCHHHHHHHHHHHHHHCCCeEeC
Confidence            9999976554322  234545554 3568999999998876665555544 579999999999999999998876

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.49  E-value=9.5e-14  Score=129.72  Aligned_cols=152  Identities=13%  Similarity=0.127  Sum_probs=105.7

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  383 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  383 (721)
                      |+||+|||+|.||++||.+|+++||+|.+||+++++.+....           .+             .....+. +.+.
T Consensus         1 M~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~-----------~~-------------~~~~~~~~e~~~   56 (162)
T d3cuma2           1 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVA-----------AG-------------ASAARSARDAVQ   56 (162)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHH-----------TT-------------CEECSSHHHHHT
T ss_pred             CCEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhh-----------hh-------------ccccchhhhhcc
Confidence            579999999999999999999999999999999998776431           11             2223333 6789


Q ss_pred             CCCEEEEcccCChHHHHHHHH---HHHhhCCCCeEEEecCCCCCH--HHHhcccC-CCCcEEEecCCCCC---CCCCeeE
Q 004972          384 DVDMVIEAVIESVPLKQKIFS---ELEKACPPHCILATNTSTIDL--NIVGEKTS-SQDRIIGAHFFSPA---HVMPLLE  454 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~~---~l~~~~~~~~ii~s~ts~~~i--~~l~~~~~-~~~r~ig~h~~~p~---~~~~lvE  454 (721)
                      ++|+|+.|||.+.. .+.++.   .+...+.++.+|++.++..+-  .++++.+. ..-+|+..+....|   ..+.+.-
T Consensus        57 ~~diii~~v~~~~~-~~~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~~~dapv~Gg~~~a~~G~l~~  135 (162)
T d3cuma2          57 GADVVISMLPASQH-VEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTF  135 (162)
T ss_dssp             SCSEEEECCSCHHH-HHHHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEE
T ss_pred             ccCeeeecccchhh-HHHHHhccccccccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCcEEecccccCccccccCCeEE
Confidence            99999999996554 445543   367778888888764444332  23444332 33455554433222   2333444


Q ss_pred             EecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q 004972          455 IVRTERTSAQVILDLMTVGKIIKKVPVVVG  484 (721)
Q Consensus       455 iv~~~~t~~e~~~~~~~l~~~lG~~~v~v~  484 (721)
                      ++.|   +++++++++++++.+|+.+++++
T Consensus       136 ~~gG---~~~~~~~~~~il~~~~~~v~~~G  162 (162)
T d3cuma2         136 MVGG---DAEALEKARPLFEAMGRNIFHAG  162 (162)
T ss_dssp             EEES---CHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             EecC---CHHHHHHHHHHHHHHcCccEECc
Confidence            4554   78999999999999999998874

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=99.23  E-value=9e-13  Score=124.74  Aligned_cols=152  Identities=11%  Similarity=0.003  Sum_probs=100.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceec---cCc-cc
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV---LDY-SE  381 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~---~~~-~~  381 (721)
                      .+|||||+|.||.+||.+|+++||+|++||+++++++...+           .+...        ......   .+. +.
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~~~~~--------~~~~~a~~~~~~~~~   63 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLA-----------NEAKG--------TKVLGAHSLEEMVSK   63 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHH-----------TTTTT--------SSCEECSSHHHHHHH
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------hcccc--------ccccchhhhhhhhhh
Confidence            47999999999999999999999999999999999877532           11000        011111   122 56


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH--HHhcccC-CCCcEEEecCCCCC---CCCCeeEE
Q 004972          382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLLEI  455 (721)
Q Consensus       382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~--~l~~~~~-~~~r~ig~h~~~p~---~~~~lvEi  455 (721)
                      +.++|.+|.++|.... ..+++..+.+.+++++++++.++..+..  ++++.+. ...+++.......+   ..+. .-+
T Consensus        64 ~~~~~~ii~~~~~~~~-v~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~ldapvsGg~~~A~~G~-~~~  141 (176)
T d2pgda2          64 LKKPRRIILLVKAGQA-VDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGP-SLM  141 (176)
T ss_dssp             BCSSCEEEECSCTTHH-HHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-EEE
T ss_pred             hcccceEEEecCchHH-HHHHHHHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCceeccccccCcccccCCc-EEE
Confidence            7889999999996644 4557788999999999888655544433  3333332 22334433221111   1111 113


Q ss_pred             ecCCCCCHHHHHHHHHHHHHcCCeeE
Q 004972          456 VRTERTSAQVILDLMTVGKIIKKVPV  481 (721)
Q Consensus       456 v~~~~t~~e~~~~~~~l~~~lG~~~v  481 (721)
                      +.|   ++++++.++++++.+++++.
T Consensus       142 ~gG---~~~~~~~~~~il~~~~~kv~  164 (176)
T d2pgda2         142 PGG---NKEAWPHIKAIFQGIAAKVG  164 (176)
T ss_dssp             EEE---CTTTHHHHHHHHHHHSCBCT
T ss_pred             cCC---CHHHHHHHHHHHHHHhcccC
Confidence            333   67789999999999998763

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=99.20  E-value=1.5e-12  Score=120.20  Aligned_cols=145  Identities=9%  Similarity=-0.065  Sum_probs=92.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCCCE
Q 004972          308 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDM  387 (721)
Q Consensus       308 I~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aDl  387 (721)
                      |+|||+|+||.+|+..|.+.++.+.+|+|+++++++..+           .+           + ....+..+.++.+|+
T Consensus         2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~-----------~~-----------~-~~~~~~~~~~~~~Di   58 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAE-----------VY-----------G-GKAATLEKHPELNGV   58 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHH-----------HT-----------C-CCCCSSCCCCC---C
T ss_pred             EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhh-----------cc-----------c-ccccchhhhhccCcE
Confidence            799999999999999987755556799999999877532           11           1 223344477899999


Q ss_pred             EEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCC-----eeEEecCCCCC
Q 004972          388 VIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMP-----LLEIVRTERTS  462 (721)
Q Consensus       388 VIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~-----lvEiv~~~~t~  462 (721)
                      ||.|||++  ...+++.++   ..++.++++.+++.+...+..     .+..+.||..++....     .-.+...-..+
T Consensus        59 Vil~v~d~--~i~~v~~~l---~~~~~ivi~~s~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd  128 (153)
T d2i76a2          59 VFVIVPDR--YIKTVANHL---NLGDAVLVHCSGFLSSEIFKK-----SGRASIHPNFSFSSLEKALEMKDQIVFGLEGD  128 (153)
T ss_dssp             EEECSCTT--THHHHHTTT---CCSSCCEEECCSSSCGGGGCS-----SSEEEEEECSCC--CTTGGGCGGGCCEEECCC
T ss_pred             EEEeccch--hhhHHHhhh---cccceeeeecccchhhhhhhh-----hccccceeeeecccccchhhhccCcEEEEeCC
Confidence            99999943  444555544   246788888777777654432     2345678754332111     11111111236


Q ss_pred             HHHHHHHHHHHHHcCCeeEEEcC
Q 004972          463 AQVILDLMTVGKIIKKVPVVVGN  485 (721)
Q Consensus       463 ~e~~~~~~~l~~~lG~~~v~v~d  485 (721)
                      ++.++.++++++.+|.+++++.+
T Consensus       129 ~~~~~~~~~l~~~lG~~~~~i~~  151 (153)
T d2i76a2         129 ERGLPIVKKIAEEISGKYFVIPS  151 (153)
T ss_dssp             TTTHHHHHHHHHHHCSCEEECCG
T ss_pred             HHHHHHHHHHHHHHCCcEEEeCC
Confidence            78899999999999999998854

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=99.20  E-value=3.8e-12  Score=121.40  Aligned_cols=110  Identities=13%  Similarity=0.098  Sum_probs=81.8

Q ss_pred             CCceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cc
Q 004972          303 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  381 (721)
Q Consensus       303 ~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  381 (721)
                      +.|+||+|||+|.||+++|..|+++|++|++|+++++.++...+.-++  ..+...-.        ...++.+++++ ++
T Consensus         5 ~~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n--~~yl~~~~--------l~~~i~~t~~l~~a   74 (189)
T d1n1ea2           5 LYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKREN--VLFLKGVQ--------LASNITFTSDVEKA   74 (189)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBC--TTTSTTCB--------CCTTEEEESCHHHH
T ss_pred             ceeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccc--cccccccc--------cccccccchhhhhc
Confidence            457899999999999999999999999999999999988765432100  00011111        12468888888 66


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhh-----CCCCeEEEecCCCCC
Q 004972          382 FKDVDMVIEAVIESVPLKQKIFSELEKA-----CPPHCILATNTSTID  424 (721)
Q Consensus       382 l~~aDlVIeavpe~~~~k~~v~~~l~~~-----~~~~~ii~s~ts~~~  424 (721)
                      +++||+||.|||  .+..+.+++++.++     .+++.++++.+.++.
T Consensus        75 ~~~ad~iiiavP--s~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGie  120 (189)
T d1n1ea2          75 YNGAEIILFVIP--TQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIE  120 (189)
T ss_dssp             HTTCSCEEECSC--HHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCC
T ss_pred             cCCCCEEEEcCc--HHHHHHHHHHHHhhhhhhhccCCcEEEEEECCCc
Confidence            899999999999  88888999887653     345666766666553

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.16  E-value=8e-12  Score=115.08  Aligned_cols=147  Identities=13%  Similarity=0.031  Sum_probs=93.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      +||+|||+|.||++||..|+++|++|++||++++........         .               +....+. +.+++
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~---------~---------------~~~~~~~~e~~~~   56 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERAR---------T---------------VGVTETSEEDVYS   56 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHH---------H---------------HTCEECCHHHHHT
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhh---------c---------------ccccccHHHHHhh
Confidence            489999999999999999999999999999887765443210         0               1112223 66799


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCC--CHHHHhcccCCCCcEEEecCCCCCCC--CCeeEEecCCC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTSSQDRIIGAHFFSPAHV--MPLLEIVRTER  460 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--~i~~l~~~~~~~~r~ig~h~~~p~~~--~~lvEiv~~~~  460 (721)
                      ||+||.|||.+.  ..++..++.....  .++++.++..  ...++++.+.. .+++....+.++..  ....-++.|+ 
T Consensus        57 ~diIi~~v~~~~--~~~~~~~~~~~~~--~~~id~st~~p~~~~~l~~~~~~-~~~~d~~v~g~~~~~~~~~~~~~~G~-  130 (152)
T d1i36a2          57 CPVVISAVTPGV--ALGAARRAGRHVR--GIYVDINNISPETVRMASSLIEK-GGFVDAAIMGSVRRKGADIRIIASGR-  130 (152)
T ss_dssp             SSEEEECSCGGG--HHHHHHHHHTTCC--SEEEECSCCCHHHHHHHHHHCSS-SEEEEEEECSCHHHHGGGCEEEEEST-
T ss_pred             cCeEEEEecCch--HHHHHHhhcccCC--ceeeccCcCCHHHHHHHHHHHhc-cCCCcccccCCcccccCCcEEEEECC-
Confidence            999999999543  3455666666543  3444433322  23456655543 35776666554321  1112244554 


Q ss_pred             CCHHHHHHHHHHHHHcCCeeEEEcCCC
Q 004972          461 TSAQVILDLMTVGKIIKKVPVVVGNCT  487 (721)
Q Consensus       461 t~~e~~~~~~~l~~~lG~~~v~v~d~~  487 (721)
                       +.+.++    .++.+|..+.++++.|
T Consensus       131 -~~~~~~----~l~~~g~~i~~~G~~P  152 (152)
T d1i36a2         131 -DAEEFM----KLNRYGLNIEVRGREP  152 (152)
T ss_dssp             -THHHHH----GGGGGTCEEEECSSST
T ss_pred             -CHHHHH----HHHHcCCeeeEcCCCC
Confidence             334443    3688999999998876

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.15  E-value=3.8e-10  Score=108.71  Aligned_cols=157  Identities=15%  Similarity=0.101  Sum_probs=97.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHH--------HHHHHHhhhhcCCCCHHHHHHhhcCceecc
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT--------IEANVRGLVTRGKLTQDKANNALKMLKGVL  377 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  377 (721)
                      |||+|||+|.+|.++|..|+++|++|++||.+++.++...+.        ....+..            .....++..++
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~------------~~~~~~~~~~~   68 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQ------------GRQTGRLSGTT   68 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHH------------HHHTTCEEEES
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhh------------hhcccccccCC
Confidence            589999999999999999999999999999999988875421        1111111            11224577788


Q ss_pred             Cc-cccCCCCEEEEcccCC--------hHHHHHHHHHHHhh---CCCCeEEEecCCCCCHHHHh--------cccCC--C
Q 004972          378 DY-SEFKDVDMVIEAVIES--------VPLKQKIFSELEKA---CPPHCILATNTSTIDLNIVG--------EKTSS--Q  435 (721)
Q Consensus       378 ~~-~~l~~aDlVIeavpe~--------~~~k~~v~~~l~~~---~~~~~ii~s~ts~~~i~~l~--------~~~~~--~  435 (721)
                      +. +++.+||+++.|||.+        ......+..++...   ..++.+|+.. |++++....        .....  .
T Consensus        69 ~~~~~i~~~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~-STv~pGtt~~~~~~~l~~~~~~~~~  147 (202)
T d1mv8a2          69 DFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVR-STVLPGTVNNVVIPLIEDCSGKKAG  147 (202)
T ss_dssp             CHHHHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEEC-SCCCTTHHHHTHHHHHHHHHSCCBT
T ss_pred             CHHHHHhhCCEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeec-cccCCcchhhhhhhhhhcccccccc
Confidence            87 5689999999999863        33444555555443   4456666543 333322111        11111  1


Q ss_pred             Cc-EEEecC------------CCCCCCCCeeEEecCCCCCHHHHHHHHHHHHHcCCeeEE
Q 004972          436 DR-IIGAHF------------FSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVV  482 (721)
Q Consensus       436 ~r-~ig~h~------------~~p~~~~~lvEiv~~~~t~~e~~~~~~~l~~~lG~~~v~  482 (721)
                      .. .+...|            .+|++.     |+.+  .+++..+.++.|++.+....+.
T Consensus       148 ~~~~~~~~PE~~~~G~a~~d~~~~~~i-----ViG~--~~~~~~~~~~~ly~~i~~~ii~  200 (202)
T d1mv8a2         148 VDFGVGTNPEFLRESTAIKDYDFPPMT-----VIGE--LDKQTGDLLEEIYRELDAPIIR  200 (202)
T ss_dssp             TTBEEEECCCCCCTTSHHHHHHSCSCE-----EEEE--SSHHHHHHHHHHHTTSSSCEEE
T ss_pred             ccccchhhhhhhcccchhhhhcCCCeE-----EEEe--CCHHHHHHHHHHHHhcCCCeEe
Confidence            11 222222            223222     4444  3789999999999998766554

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.13  E-value=3.5e-11  Score=111.18  Aligned_cols=145  Identities=14%  Similarity=0.097  Sum_probs=99.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCCC
Q 004972          307 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD  386 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~aD  386 (721)
                      ||||||+|.||.+||.+|.++|+.| +|+++.++.....+.           +           +  ......+.+.++|
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~-----------~-----------~--~~~~~~~~~~~~~   56 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEE-----------F-----------G--SEAVPLERVAEAR   56 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHH-----------H-----------C--CEECCGGGGGGCS
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHH-----------c-----------C--Cccccccccccee
Confidence            7999999999999999999999865 688887776553211           0           1  1133446778899


Q ss_pred             EEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH--HHHhcccCCCCcEEEecCCCCC--------CCCCeeEEe
Q 004972          387 MVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTSSQDRIIGAHFFSPA--------HVMPLLEIV  456 (721)
Q Consensus       387 lVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i--~~l~~~~~~~~r~ig~h~~~p~--------~~~~lvEiv  456 (721)
                      ++|.++|.+.++ ..+...+.....++.+++..++..+-  .++++.+...    +++|.+.|        ..+.+.-++
T Consensus        57 ~~i~~~~~~~~v-~~~~~~l~~~~~~~~~iid~sT~~p~~~~~~~~~~~~~----gi~~ldapVsGg~~~A~~G~L~~~v  131 (156)
T d2cvza2          57 VIFTCLPTTREV-YEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREK----GVTYLDAPVSGGTSGAEAGTLTVML  131 (156)
T ss_dssp             EEEECCSSHHHH-HHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTT----TEEEEECCEESHHHHHHHTCEEEEE
T ss_pred             EEEecccchhhh-hhhhccccccccccccccccccCCHHHHHHHHHHHHHc----CCeEEeccccCchhhhccCCEEEEE
Confidence            999999966554 45567788888889888754443332  2444444321    45555443        223445455


Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCeeEEEcC
Q 004972          457 RTERTSAQVILDLMTVGKIIKKVPVVVGN  485 (721)
Q Consensus       457 ~~~~t~~e~~~~~~~l~~~lG~~~v~v~d  485 (721)
                      .|   ++++++.+++++ .++++++++++
T Consensus       132 gG---~~~~~~~~~p~L-~~~~~v~~~GP  156 (156)
T d2cvza2         132 GG---PEEAVERVRPFL-AYAKKVVHVGP  156 (156)
T ss_dssp             ES---CHHHHHHHGGGC-TTEEEEEEEES
T ss_pred             eC---CHHHHHHHHHHH-HhcCcCEEeCc
Confidence            55   799999999999 49999998864

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.10  E-value=9.6e-11  Score=110.68  Aligned_cols=155  Identities=14%  Similarity=0.062  Sum_probs=101.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc----cc
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----SE  381 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~----~~  381 (721)
                      +||||||+|.||.+||.+|+++||+|++||+++++.+...+.           +....     .........+.    ..
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~-----------~~~~~-----~~~~~~~~~~~~~~~~~   65 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKA-----------NASAP-----FAGNLKAFETMEAFAAS   65 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH-----------TTTST-----TGGGEEECSCHHHHHHH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHc-----------CCccc-----cccchhhhhhhhHHHHh
Confidence            489999999999999999999999999999999998775431           11100     00111111111    34


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH--HHHhcccC-CCCcEEEecCCCCC---CCCCeeEE
Q 004972          382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS-SQDRIIGAHFFSPA---HVMPLLEI  455 (721)
Q Consensus       382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i--~~l~~~~~-~~~r~ig~h~~~p~---~~~~lvEi  455 (721)
                      +..++.++++++..... ..++..+...+.+++++++.++..+-  .++++.+. ..-.++....+..+   ..+. .-+
T Consensus        66 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g~~~~a~~g~-~~m  143 (178)
T d1pgja2          66 LKKPRKALILVQAGAAT-DSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGP-AFF  143 (178)
T ss_dssp             BCSSCEEEECCCCSHHH-HHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCC-EEE
T ss_pred             cccceEEEEeecCcchh-hhhhhhhhhhccccceecccCccchhHHHHHHHHHhhcceeEecccccCCcchhcCCc-EEE
Confidence            57788888888855554 45567788888898888765544332  23444433 33455555443322   1111 224


Q ss_pred             ecCCCCCHHHHHHHHHHHHHcCCeeE
Q 004972          456 VRTERTSAQVILDLMTVGKIIKKVPV  481 (721)
Q Consensus       456 v~~~~t~~e~~~~~~~l~~~lG~~~v  481 (721)
                      +.|   +++++++++++++.+++++.
T Consensus       144 vgG---~~~~~~~v~pil~~~~~~~~  166 (178)
T d1pgja2         144 PGG---TLSVWEEIRPIVEAAAAKAD  166 (178)
T ss_dssp             EEE---CHHHHHHHHHHHHHHSCBCT
T ss_pred             eeC---CHHHHHHHHHHHHHHhcccc
Confidence            444   78999999999999998876

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=99.09  E-value=3.7e-11  Score=113.92  Aligned_cols=102  Identities=16%  Similarity=0.121  Sum_probs=75.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhh-cCCCCHHHHHHhhcCceeccCc-cccC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT-RGKLTQDKANNALKMLKGVLDY-SEFK  383 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~i~~~~~~-~~l~  383 (721)
                      +||+|||+|.||.++|..|+++|++|++||++++.++...+..     .... ....     .........+++. +.++
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~-----~~~~~~~~~~~~~~e~~~   71 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRG-----AIIAEGPGL-----AGTAHPDLLTSDIGLAVK   71 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHT-----SEEEESSSC-----CEEECCSEEESCHHHHHT
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcC-----CCchhhhhh-----hhhhhhhhhhhhhHhHhc
Confidence            6899999999999999999999999999999999887754210     0000 0000     0001123334555 6689


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEec
Q 004972          384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATN  419 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~  419 (721)
                      +||+||+|+|  ......+++++.++++++++|+..
T Consensus        72 ~aD~iii~v~--~~~~~~~~~~i~~~l~~~~~iv~~  105 (184)
T d1bg6a2          72 DADVILIVVP--AIHHASIAANIASYISEGQLIILN  105 (184)
T ss_dssp             TCSEEEECSC--GGGHHHHHHHHGGGCCTTCEEEES
T ss_pred             CCCEEEEEEc--hhHHHHHHHHhhhccCCCCEEEEe
Confidence            9999999999  666789999999999999987653

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.02  E-value=5.3e-11  Score=112.63  Aligned_cols=100  Identities=15%  Similarity=0.088  Sum_probs=72.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCC--HHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVN--SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  382 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  382 (721)
                      |||+|||+|.||+++|..|+++|++|++|.++  ++.++...+.        .....+.   .......+..+++. +++
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~--------~~~~~~~---~~~~~~~i~~~~~~~~~~   69 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAG--------REHPRLG---VKLNGVEIFWPEQLEKCL   69 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTT--------CCBTTTT---BCCCSEEEECGGGHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhh--------hhhhhhc---chhccccccccccHHHHH
Confidence            58999999999999999999999999999884  4444432210        0000000   00001235566776 568


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEe
Q 004972          383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT  418 (721)
Q Consensus       383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s  418 (721)
                      +++|+||.|||  ....+.+++++.++++++.+++.
T Consensus        70 ~~ad~Ii~avp--s~~~~~~~~~l~~~l~~~~ii~~  103 (180)
T d1txga2          70 ENAEVVLLGVS--TDGVLPVMSRILPYLKDQYIVLI  103 (180)
T ss_dssp             TTCSEEEECSC--GGGHHHHHHHHTTTCCSCEEEEC
T ss_pred             hccchhhcccc--hhhhHHHHHhhccccccceeccc
Confidence            99999999999  88999999999999988876654

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.84  E-value=3.4e-09  Score=96.24  Aligned_cols=122  Identities=19%  Similarity=0.238  Sum_probs=79.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  383 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  383 (721)
                      +||+|||+|.+|+++|..++..|+  +++++|++++.++.....+.+..   ....          ......+.++++++
T Consensus         7 ~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~---~~~~----------~~~~~~~~d~~~l~   73 (148)
T d1ldna1           7 ARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGK---VFAP----------KPVDIWHGDYDDCR   73 (148)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHT---TSSS----------SCCEEEECCGGGTT
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCc---cccC----------CCeEEEECCHHHhc
Confidence            599999999999999999999886  79999999988654332222110   0000          01223466789999


Q ss_pred             CCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccC-CCCcEEEe
Q 004972          384 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS-SQDRIIGA  441 (721)
Q Consensus       384 ~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~-~~~r~ig~  441 (721)
                      +||+||.+.-.              +..+.+++.+++.+++++. +++..|..  +....+.+... .+.|++|+
T Consensus        74 daDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a-~~ivvtNPvd~~t~~~~k~sg~p~~rViG~  147 (148)
T d1ldna1          74 DADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQG-LFLVATNPVDILTYATWKFSGLPHERVIGS  147 (148)
T ss_dssp             TCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCS-EEEECSSSHHHHHHHHHHHHTCCGGGEEEC
T ss_pred             cceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCc-eEEEecCccHHHHHHHHHHHCcChhheecC
Confidence            99999987732              3557777888888887654 44433332  22223333333 35688875

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=98.83  E-value=3.3e-09  Score=95.94  Aligned_cols=122  Identities=20%  Similarity=0.211  Sum_probs=79.1

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcccc
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  382 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l  382 (721)
                      -+||+|||+|.+|.++|..++..|.  +|+++|++++.++.-...+.+   .....+           .....+.+++++
T Consensus         5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~---a~~~~~-----------~~~~~~~d~~~~   70 (146)
T d1ez4a1           5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLED---AQAFTA-----------PKKIYSGEYSDC   70 (146)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHG---GGGGSC-----------CCEEEECCGGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhc---cccccC-----------CceEeeccHHHh
Confidence            3599999999999999999999884  899999999876532221111   111111           234456788899


Q ss_pred             CCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCeEEEecCC--CCCHHHHhcccC-CCCcEEEe
Q 004972          383 KDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTS--TIDLNIVGEKTS-SQDRIIGA  441 (721)
Q Consensus       383 ~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts--~~~i~~l~~~~~-~~~r~ig~  441 (721)
                      ++||+||.+...              +..+.+++..++.++.++ ++++..|.  ......+..... .+.|++|+
T Consensus        71 ~~adivvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~-aivivvtNPvdv~t~~~~k~sg~p~~rViG~  145 (146)
T d1ez4a1          71 KDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFD-GIFLVAANPVDILTYATWKFSGFPKERVIGS  145 (146)
T ss_dssp             TTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTTCC-SEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             ccccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCC-cEEEEeCCccHHHHHHHHHHHCcCccceecC
Confidence            999999998731              244666777788887654 44443333  222233334444 34678874

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.82  E-value=7.4e-09  Score=93.13  Aligned_cols=123  Identities=17%  Similarity=0.314  Sum_probs=80.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  383 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  383 (721)
                      +||+|||+|.+|+++|..++..|.  +++++|++++.++.-...+++.......            ..++..++++++++
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~------------~~~i~~~~d~~~~~   68 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDK------------YPKIVGGADYSLLK   68 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTC------------CCEEEEESCGGGGT
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCC------------CCccccCCCHHHhc
Confidence            589999999999999999998886  7999999998865432223222111100            12466677889999


Q ss_pred             CCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCeEEEecCCCCCH-H-HHhcccC-CCCcEEEe
Q 004972          384 DVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTSTIDL-N-IVGEKTS-SQDRIIGA  441 (721)
Q Consensus       384 ~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i-~-~l~~~~~-~~~r~ig~  441 (721)
                      +||+||.+..              .+..+.+++..++.++. ++++++..|....+ + .+..... .+.|++|+
T Consensus        69 ~adiVvitag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~-p~aivivvtNPvD~~t~~~~k~sg~p~~rViG~  142 (142)
T d1ojua1          69 GSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILVVTNPMDVMTYIMWKESGKPRNEVFGM  142 (142)
T ss_dssp             TCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTS-TTCEEEECSSSHHHHHHHHHHHSCCCTTSEEEC
T ss_pred             cccEEEEeccccCCCCCchHHHHHHhhHHHHHHHHHHHhhC-CCcEEEEecCChHHHHHHHHHHHCCChhcEecC
Confidence            9999998873              13345556666677775 45666655554332 2 2333333 46788875

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=98.79  E-value=6.6e-09  Score=93.75  Aligned_cols=123  Identities=18%  Similarity=0.217  Sum_probs=79.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  383 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  383 (721)
                      +||+|||+|.+|+++|..++..|.  +++++|++++.++.....+.......            .....+..++++++++
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~------------~~~~~i~~~~~~~~~~   68 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVG------------LFDTKVTGSNDYADTA   68 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHH------------TCCCEEEEESCGGGGT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchh------------cccceEEecCCHHHhc
Confidence            489999999999999999999985  89999999987654322221111000            0112355567889999


Q ss_pred             CCCEEEEcc--cC------------ChHHHHHHHHHHHhhCCCCeEEEecCCCCC--HHHHhcccC-CCCcEEEe
Q 004972          384 DVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTS-SQDRIIGA  441 (721)
Q Consensus       384 ~aDlVIeav--pe------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--i~~l~~~~~-~~~r~ig~  441 (721)
                      +||+||.+.  |.            +..+.+++.+.+.++++ +++++..|....  ...+..... .+.|++|+
T Consensus        69 dadvvvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p-~aivivvtNPvd~~~~~~~~~sg~p~~rviG~  142 (142)
T d1guza1          69 NSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSK-NPIIIVVSNPLDIMTHVAWVRSGLPKERVIGM  142 (142)
T ss_dssp             TCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCS-SCEEEECCSSHHHHHHHHHHHHCSCGGGEEEE
T ss_pred             CCeEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhccCC-CeEEEEecCChHHHHHHHHHHhCCChHhEeeC
Confidence            999999986  22            34466777778888875 555543333211  112222233 35688875

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=98.77  E-value=1.1e-08  Score=91.87  Aligned_cols=122  Identities=25%  Similarity=0.341  Sum_probs=80.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  383 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  383 (721)
                      .||+|||+|.+|+++|..++..|+  +++++|++++.++.-...+.+...   ..+          ...+..++++++++
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~---~~~----------~~~i~~~~~~~~~~   68 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSS---FYP----------TVSIDGSDDPEICR   68 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGG---GST----------TCEEEEESCGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccc---cCC----------CceeecCCCHHHhh
Confidence            589999999999999999999987  899999999876543222222100   001          02355577788999


Q ss_pred             CCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccC-CCCcEEEe
Q 004972          384 DVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS-SQDRIIGA  441 (721)
Q Consensus       384 ~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~-~~~r~ig~  441 (721)
                      +||+||.+.-              .+..+.+++..++.++.+.. +++..|..  .....+.+... .+.|++|+
T Consensus        69 daDvVVitaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~a-i~ivvtNPvDvmt~~~~~~sg~p~~rViG~  142 (143)
T d1llda1          69 DADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNA-IYMLITNPVDIATHVAQKLTGLPENQIFGS  142 (143)
T ss_dssp             TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTS-EEEECCSSHHHHHHHHHHHHTCCTTSEEEC
T ss_pred             CCcEEEEecccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCe-EEEEeCCchHHHHHHHHHHHCCChhhccCC
Confidence            9999998773              25557777778888886555 44433332  22223333333 45788875

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=98.71  E-value=1.8e-09  Score=100.17  Aligned_cols=106  Identities=11%  Similarity=-0.056  Sum_probs=76.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  385 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  385 (721)
                      |||+|||+|.||+.+|..|+++|++|++|+++++..+..           ...+. .    .........+++.+.+.++
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~-----------~~~~~-~----~~~~~~~~~~~~~~~~~~~   64 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSV-----------NLVET-D----GSIFNESLTANDPDFLATS   64 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEE-----------EEECT-T----SCEEEEEEEESCHHHHHTC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhh-----------ccccC-C----ccccccccccchhhhhccc
Confidence            589999999999999999999999999999988653321           00010 0    0000112223344667899


Q ss_pred             CEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHh
Q 004972          386 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG  429 (721)
Q Consensus       386 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~  429 (721)
                      |+||.|++  .....++++.+.++++++++|++...++...+..
T Consensus        65 D~iii~vk--a~~~~~~~~~l~~~~~~~~~Iv~~qNG~~~~~~l  106 (167)
T d1ks9a2          65 DLLLVTLK--AWQVSDAVKSLASTLPVTTPILLIHNGMGTIEEL  106 (167)
T ss_dssp             SEEEECSC--GGGHHHHHHHHHTTSCTTSCEEEECSSSCTTGGG
T ss_pred             ceEEEeec--ccchHHHHHhhccccCcccEEeeccCcccHHHHH
Confidence            99999998  6667788999999999999888877776654433

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=98.71  E-value=1.9e-08  Score=90.79  Aligned_cols=122  Identities=19%  Similarity=0.294  Sum_probs=77.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  383 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  383 (721)
                      +||+|||+|.+|+++|..++..|.  +++++|++++.++.....+.+...   ...          ......+.++++++
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~---~~~----------~~~~~~~~d~~~l~   68 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMA---NLE----------AHGNIVINDWAALA   68 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGG---GSS----------SCCEEEESCGGGGT
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhcccc---ccC----------CccceeccCHHHhc
Confidence            699999999999999999998875  899999999876543322222111   111          01123456788999


Q ss_pred             CCCEEEEcccC------------------ChHHHHHHHHHHHhhCCCCeEEEecCCCCCH-HH-HhcccC-CCCcEEEe
Q 004972          384 DVDMVIEAVIE------------------SVPLKQKIFSELEKACPPHCILATNTSTIDL-NI-VGEKTS-SQDRIIGA  441 (721)
Q Consensus       384 ~aDlVIeavpe------------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i-~~-l~~~~~-~~~r~ig~  441 (721)
                      +||+||.+...                  +..+.+++.+.+.+++ |+++++..|....+ +. +.+... .+.|++|.
T Consensus        69 ~adiVVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~-p~aivivvtNPvD~~t~~~~k~sg~p~~rViGt  146 (146)
T d1hyha1          69 DADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG-FHGVLVVISNPVDVITALFQHVTGFPAHKVIGT  146 (146)
T ss_dssp             TCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             cccEEEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcC-CCeEEEEecCcHHHHHHHHHHHhCCCccceeCc
Confidence            99999987531                  2234556666677665 55666655544322 22 233333 35678773

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=98.69  E-value=1.6e-08  Score=91.00  Aligned_cols=122  Identities=16%  Similarity=0.296  Sum_probs=78.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  384 (721)
                      +||+|||+|.+|+++|..++..+. +++++|++++..+.....+.....  ..          ....++..+.+++++++
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~--~~----------~~~~~i~~~~d~~~~~~   69 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASP--IE----------GFDVRVTGTNNYADTAN   69 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHH--HH----------TCCCCEEEESCGGGGTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhcccc--cc----------CCCCEEEecCcHHHhcC
Confidence            599999999999999999998876 999999998876553322221110  00          11124666788999999


Q ss_pred             CCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCeEEEecCCCCCH-HHHh-cccC-CCCcEEE
Q 004972          385 VDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVG-EKTS-SQDRIIG  440 (721)
Q Consensus       385 aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i-~~l~-~~~~-~~~r~ig  440 (721)
                      +|+||.+...              +..+.+++..++.++.+ +++++..|....+ +.+. +... .+.|++|
T Consensus        70 advvvitag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p-~aivivvtNPvDv~t~~~~~~sglp~~rViG  141 (142)
T d1uxja1          70 SDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSP-NAVIIMVNNPLDAMTYLAAEVSGFPKERVIG  141 (142)
T ss_dssp             CSEEEECCSCC---------CHHHHHHHHHHHHHHHGGGCT-TCEEEECSSSHHHHHHHHHHHHCCCGGGEEE
T ss_pred             CCEEEEeeeccCCcCcchhHHHhHHHHHHHHHHHHHhccCC-CceEEEeCCchHHHHHHHHHHHCcCcccccC
Confidence            9999998831              23355667777777755 4555544443222 2222 2223 3567776

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.67  E-value=3.4e-08  Score=88.58  Aligned_cols=120  Identities=20%  Similarity=0.281  Sum_probs=77.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcC-ceeccCcccc
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKM-LKGVLDYSEF  382 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-i~~~~~~~~l  382 (721)
                      +||+|||+|.+|.++|..++..+.  +++++|++++.++.....+....               ..... ...+.+++++
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~---------------~~~~~~~~~~~~~~~~   65 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGT---------------PFTRRANIYAGDYADL   65 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHG---------------GGSCCCEEEECCGGGG
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccc---------------cccccccccCCcHHHh
Confidence            489999999999999999998875  89999999987664322222211               01111 2235567889


Q ss_pred             CCCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCeEEEecCCCCCH-HH-HhcccC-CCCcEEEe
Q 004972          383 KDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTSTIDL-NI-VGEKTS-SQDRIIGA  441 (721)
Q Consensus       383 ~~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i-~~-l~~~~~-~~~r~ig~  441 (721)
                      ++||+||.+.-              .+..+.+++.+++.+++++ ++++..|....+ +. +.+... .+.|++|.
T Consensus        66 ~~adivvitag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~-aivivvtNPvd~~t~~~~k~sg~p~~rViGt  140 (140)
T d1a5za1          66 KGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPD-SIVIVVTNPVDVLTYFFLKESGMDPRKVFGS  140 (140)
T ss_dssp             TTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTT-CEEEECSSSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred             cCCCEEEEecccccCCCcchhhhhccccchHHHHHHHHHhcCCC-cEEEEeCCcHHHHHHHHHHHHCcCccceeCc
Confidence            99999999872              1444667777788888755 455443433221 22 223333 45678773

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=98.66  E-value=3.3e-08  Score=90.26  Aligned_cols=121  Identities=20%  Similarity=0.291  Sum_probs=78.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  383 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  383 (721)
                      +||+|||+|.+|+++|..++..|+  +++++|++++.++.-...+.+   .....+          ...+....++++++
T Consensus        21 ~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h---~~~~~~----------~~~~~~~~d~~~~~   87 (160)
T d1i0za1          21 NKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQH---GSLFLQ----------TPKIVADKDYSVTA   87 (160)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHH---TGGGCC----------CSEEEECSSGGGGT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhc---cccccC----------CCeEEeccchhhcc
Confidence            599999999999999999999998  899999998876543222221   111111          01234566789999


Q ss_pred             CCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccC-CCCcEEE
Q 004972          384 DVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS-SQDRIIG  440 (721)
Q Consensus       384 ~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~-~~~r~ig  440 (721)
                      +||+||.+.-              .+..+.+++..++.++.+ +++++..|..  .....+.+... .++|++|
T Consensus        88 ~adiVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p-~aiiivvtNPvDv~t~~~~k~sglp~~rViG  160 (160)
T d1i0za1          88 NSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSP-DCIIIVVSNPVDILTYVTWKLSGLPKHRVIG  160 (160)
T ss_dssp             TCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCT-TCEEEECSSSHHHHHHHHHHHHCCCGGGEEE
T ss_pred             cccEEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCC-CcEEEEeCCchHHHHHHHHHHHCcCcccccC
Confidence            9999998762              144466777778888765 4445443433  22233333334 3467776

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=98.64  E-value=2.7e-08  Score=90.71  Aligned_cols=125  Identities=20%  Similarity=0.296  Sum_probs=80.0

Q ss_pred             CceeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cc
Q 004972          304 GVRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  381 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  381 (721)
                      +.+||+|||+|.+|+++|..++..++ +++++|++++.++.....+....... ..           ...+..++++ ++
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~-~~-----------~~~~~~~~~~~~~   73 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVV-DT-----------NVSVRAEYSYEAA   73 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHT-TC-----------CCCEEEECSHHHH
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhcccc-CC-----------eeEEeccCchhhh
Confidence            45799999999999999999988886 89999999987665433333221111 10           0134455565 56


Q ss_pred             cCCCCEEEEcccC-------------------ChHHHHHHHHHHHhhCCCCeEEEecCCCCC--HHHHhcccC-CCCcEE
Q 004972          382 FKDVDMVIEAVIE-------------------SVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTS-SQDRII  439 (721)
Q Consensus       382 l~~aDlVIeavpe-------------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~--i~~l~~~~~-~~~r~i  439 (721)
                      +++||+||.+...                   +..+.+++..++.+++++ ++++..|....  ...+.+... .+.|++
T Consensus        74 ~~~adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~-aiviivsNPvd~lt~~~~~~sg~p~~rVi  152 (154)
T d1pzga1          74 LTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK-TFIIVVTNPLDCMVKVMCEASGVPTNMIC  152 (154)
T ss_dssp             HTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTT-CEEEECCSSHHHHHHHHHHHHCCCGGGEE
T ss_pred             hcCCCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCC-cEEEEeCCcHHHHHHHHHHHhCcChhcEe
Confidence            8999999987721                   233566777778887765 55554444332  222223333 356788


Q ss_pred             Ee
Q 004972          440 GA  441 (721)
Q Consensus       440 g~  441 (721)
                      |+
T Consensus       153 G~  154 (154)
T d1pzga1         153 GM  154 (154)
T ss_dssp             EC
T ss_pred             cC
Confidence            75

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.60  E-value=4.2e-08  Score=88.28  Aligned_cols=101  Identities=19%  Similarity=0.199  Sum_probs=64.6

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCC--ceEEEeCCHHH--HHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcc
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEY--LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS  380 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~--~V~l~d~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  380 (721)
                      +||+|||+ |.+|.++|..++..|.  +++++|++++.  ++.....+.+..........          -.+..+.+++
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~----------~~~~~~~d~~   70 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDAN----------IYVESDENLR   70 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCE----------EEEEETTCGG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCc----------cccCCcchHH
Confidence            48999996 9999999999999985  99999998643  22211122211110000000          0123345778


Q ss_pred             ccCCCCEEEEcc--cC------------ChHHHHHHHHHHHhhCCCCeEEE
Q 004972          381 EFKDVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILA  417 (721)
Q Consensus       381 ~l~~aDlVIeav--pe------------~~~~k~~v~~~l~~~~~~~~ii~  417 (721)
                      ++++||+||.+.  |.            +..+.+++..++.++.+ +.+++
T Consensus        71 ~l~~aDvVVitAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~-~~iiv  120 (145)
T d1hyea1          71 IIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICD-TKIFV  120 (145)
T ss_dssp             GGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCC-CEEEE
T ss_pred             HhccceEEEEecccccCCCCChhhhhhhhHHHHHHHHHHHhccCC-CeEEE
Confidence            999999999985  21            34466677778888875 45554

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=98.52  E-value=3.5e-08  Score=88.62  Aligned_cols=120  Identities=21%  Similarity=0.307  Sum_probs=72.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCc-eeccCcccc
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKML-KGVLDYSEF  382 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i-~~~~~~~~l  382 (721)
                      +||+|||+|.+|+++|..++..|+  +++++|++++.++.-...+        ....-       ..... ..+.+++++
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl--------~~~~~-------~~~~~~~~~~~~~~~   66 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDI--------NHGLP-------FMGQMSLYAGDYSDV   66 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHH--------TTSCC-------CTTCEEEC--CGGGG
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeee--------ccCcc-------cCCCeeEeeCcHHHh
Confidence            489999999999999999999987  8999999998654321111        11100       00111 224567889


Q ss_pred             CCCCEEEEccc--C------------ChHHHHHHHHHHHhhCCCCeEEEecCCCC--CHHHHhcccC-CCCcEEEe
Q 004972          383 KDVDMVIEAVI--E------------SVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTS-SQDRIIGA  441 (721)
Q Consensus       383 ~~aDlVIeavp--e------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~--~i~~l~~~~~-~~~r~ig~  441 (721)
                      ++||+||.+.-  .            +..+.+++.+++.++.++. +++..|...  ....+..... .+.|++|+
T Consensus        67 ~~adivvitag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~a-i~ivvtNPvdv~t~~~~k~sg~p~~rViG~  141 (142)
T d1y6ja1          67 KDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHG-VILVVSNPVDIITYMIQKWSGLPVGKVIGS  141 (142)
T ss_dssp             TTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHCCSC-EEEECSSSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred             CCCceEEEecccccCcCcchhHHhhHHHHHHHHHHHHhhccCCCc-eEEEecChHHHHHHHHHHHHCCCccceecC
Confidence            99999998852  1            3446666777788877544 454333332  2222333333 45688875

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.50  E-value=1.9e-07  Score=84.42  Aligned_cols=123  Identities=20%  Similarity=0.312  Sum_probs=78.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  384 (721)
                      .||+|||+|.+|+++|..++..+. +++++|++++.++.....+.+...  ...          ....+..+.+++++++
T Consensus         4 ~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~--~~~----------~~~~v~~~~~~~~~~~   71 (150)
T d1t2da1           4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNV--MAY----------SNCKVSGSNTYDDLAG   71 (150)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHH--HHT----------CCCCEEEECCGGGGTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhcc--ccC----------CCcEEEecccccccCC
Confidence            599999999999999998888876 899999999876654333222110  000          0123445667889999


Q ss_pred             CCEEEEcccC-------------------ChHHHHHHHHHHHhhCCCCeEEEecCCCCCH-HHHh-cccC-CCCcEEEe
Q 004972          385 VDMVIEAVIE-------------------SVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVG-EKTS-SQDRIIGA  441 (721)
Q Consensus       385 aDlVIeavpe-------------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i-~~l~-~~~~-~~~r~ig~  441 (721)
                      ||+||.+.-.                   +..+.+++..++.++++ +++++..|....+ +.+. .... .+.|++|+
T Consensus        72 advvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p-~aivivvtNPvD~~t~~~~~~sg~p~~rViG~  149 (150)
T d1t2da1          72 ADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCP-NAFIIVVTNPVDVMVQLLHQHSGVPKNKIIGL  149 (150)
T ss_dssp             CSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CcEEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCC-CeEEEEecCchHHHHHHHHHHHCCCchheecc
Confidence            9999988731                   22255666667777765 5665544444332 2222 2223 45688874

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.49  E-value=8.9e-08  Score=87.33  Aligned_cols=122  Identities=19%  Similarity=0.278  Sum_probs=77.1

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcccc
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  382 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l  382 (721)
                      -.||+|||+|.+|+++|..++..|+  +++++|++++.++.-...+.+.   ....+          ...+..+.+++++
T Consensus        19 ~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~---~~~~~----------~~~~~~~~d~~~~   85 (159)
T d2ldxa1          19 RCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHG---SLFLS----------TPKIVFGKDYNVS   85 (159)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHT---TTTCS----------CCEEEEESSGGGG
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCc---chhcC----------CCeEEeccchhhh
Confidence            3689999999999999999999987  8999999998765433222211   10111          0123446678899


Q ss_pred             CCCCEEEEcccC--------------ChHHHHHHHHHHHhhCCCCeEEEecCCCCCH--HHHhcccC-CCCcEEE
Q 004972          383 KDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS-SQDRIIG  440 (721)
Q Consensus       383 ~~aDlVIeavpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i--~~l~~~~~-~~~r~ig  440 (721)
                      ++||+||.+.-.              +..+.+++..++.++.+ +.+++..|....+  ..+.+... .+.|++|
T Consensus        86 ~~adivvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p-~~ivivvtNPvDv~t~~~~k~sg~p~~rV~G  159 (159)
T d2ldxa1          86 ANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSP-DCKIIVVTNPVDILTYVVWKISGFPVGRVIG  159 (159)
T ss_dssp             TTEEEEEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHST-TCEEEECSSSHHHHHHHHHHHHCSCTTTEEE
T ss_pred             ccccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCC-CeEEEEeCCcHHHHHHHHHHHHCcCcccccC
Confidence            999999987631              34455555556666654 5556544443222  22233333 4567765

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.46  E-value=2.2e-07  Score=88.35  Aligned_cols=109  Identities=19%  Similarity=0.246  Sum_probs=68.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHH----HHHHHhhhhcCCCCHHHHHHhhcCceeccCc-c
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI----EANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  380 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  380 (721)
                      |||+|||+|.+|.++|..++ .|++|++||.+++.++......    +..++.+.+.          ...++..+++. .
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~----------~~~~~~~~~~~~~   69 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKS----------KQLSIKATLDSKA   69 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHH----------SCCCEEEESCHHH
T ss_pred             CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhh----------hhhhhhccchhhh
Confidence            58999999999999998876 6999999999999988754210    0111111111          11234444444 5


Q ss_pred             ccCCCCEEEEcccCCh---------HHHHHHHHHHHhhCCCCeEEEecCCCCCHHH
Q 004972          381 EFKDVDMVIEAVIESV---------PLKQKIFSELEKACPPHCILATNTSTIDLNI  427 (721)
Q Consensus       381 ~l~~aDlVIeavpe~~---------~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~  427 (721)
                      ...++|+|+.|+|.+.         .......+.+... .++.+++. .|+.++..
T Consensus        70 ~~~~~~ii~v~vpt~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~iii-~Stv~pgt  123 (196)
T d1dlja2          70 AYKEAELVIIATPTNYNSRINYFDTQHVETVIKEVLSV-NSHATLII-KSTIPIGF  123 (196)
T ss_dssp             HHHHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHHH-CSSCEEEE-CSCCCTTH
T ss_pred             hhhccccccccCCccccccCCCcceeEEeehhhhhhhc-ccceeEEe-eeecCcee
Confidence            5789999999998633         2334444555544 44555543 44444443

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=98.34  E-value=1.2e-06  Score=81.08  Aligned_cols=104  Identities=16%  Similarity=0.196  Sum_probs=69.7

Q ss_pred             eeEEEEcCCCCcHHHHH--HHHHC----CCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc
Q 004972          306 RKVAVIGGGLMGSGIAT--AHILN----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  379 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~--~la~~----G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  379 (721)
                      +||+|||+|..|.+.+.  .++..    +.+++++|+++++++......++.....-..            -++..++|.
T Consensus         3 mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~------------~~i~~~td~   70 (171)
T d1obba1           3 VKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGAD------------LKFEKTMNL   70 (171)
T ss_dssp             CEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCC------------CEEEEESCH
T ss_pred             cEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCC------------eEEEEeCCh
Confidence            49999999999987543  24332    4599999999998876544444332221111            246667776


Q ss_pred             -cccCCCCEEEEcccC----------------------------------------ChHHHHHHHHHHHhhCCCCeEEEe
Q 004972          380 -SEFKDVDMVIEAVIE----------------------------------------SVPLKQKIFSELEKACPPHCILAT  418 (721)
Q Consensus       380 -~~l~~aDlVIeavpe----------------------------------------~~~~k~~v~~~l~~~~~~~~ii~s  418 (721)
                       +++++||+||.++--                                        +..+.+++.+.+.+++ |+++++.
T Consensus        71 ~eaL~dad~Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~-p~a~~i~  149 (171)
T d1obba1          71 DDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLS-PKAWYLQ  149 (171)
T ss_dssp             HHHHTTCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHC-TTCEEEE
T ss_pred             hhcccCCCeEeeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHC-cCeEEEE
Confidence             779999999987521                                        3456677888888887 5566665


Q ss_pred             cCCC
Q 004972          419 NTST  422 (721)
Q Consensus       419 ~ts~  422 (721)
                      .|..
T Consensus       150 ~TNP  153 (171)
T d1obba1         150 AANP  153 (171)
T ss_dssp             CSSC
T ss_pred             ECCh
Confidence            4444

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=98.21  E-value=5.8e-06  Score=75.72  Aligned_cols=121  Identities=15%  Similarity=0.123  Sum_probs=72.9

Q ss_pred             eeEEEEcCCCCcHHHHH--HHHHC-C---CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc
Q 004972          306 RKVAVIGGGLMGSGIAT--AHILN-N---IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  379 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~--~la~~-G---~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  379 (721)
                      .||+|||+|..|.+.+.  .+... .   -+|+++|+++++++.....+.........            ..++..++|.
T Consensus         4 ~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~d~   71 (167)
T d1u8xx1           4 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAP------------DIEFAATTDP   71 (167)
T ss_dssp             EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCT------------TSEEEEESCH
T ss_pred             ceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCC------------CcceEecCCh
Confidence            58999999999987553  23222 2   38999999999977543332222111100            1245666676


Q ss_pred             -cccCCCCEEEEcccC----------------------------------ChHHHHHHHHHHHhhCCCCeEEEecCCCCC
Q 004972          380 -SEFKDVDMVIEAVIE----------------------------------SVPLKQKIFSELEKACPPHCILATNTSTID  424 (721)
Q Consensus       380 -~~l~~aDlVIeavpe----------------------------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~  424 (721)
                       +++++||+||.++--                                  +..+.+++.+++.+++ |+++++..|....
T Consensus        72 ~eal~~AD~Vvitag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~-P~A~li~~TNPvd  150 (167)
T d1u8xx1          72 EEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYS-PDAWMLNYSNPAA  150 (167)
T ss_dssp             HHHHSSCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSCHH
T ss_pred             hhccCCCCEEEECCCcCCCCceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhC-CCeEEEEeCCHHH
Confidence             779999999998731                                  1345567778888887 5666665454433


Q ss_pred             H-HHHhcccCCCCcEE
Q 004972          425 L-NIVGEKTSSQDRII  439 (721)
Q Consensus       425 i-~~l~~~~~~~~r~i  439 (721)
                      + +........+.|+|
T Consensus       151 v~t~~~~k~~P~~rVI  166 (167)
T d1u8xx1         151 IVAEATRRLRPNSKIL  166 (167)
T ss_dssp             HHHHHHHHHSTTCCEE
T ss_pred             HHHHHHHHHCCccccc
Confidence            2 23222233344554

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=98.16  E-value=3e-06  Score=75.50  Aligned_cols=119  Identities=21%  Similarity=0.308  Sum_probs=71.8

Q ss_pred             eeEEEEc-CCCCcHHHHHHHHHCCC--ceEEEeCCH--HHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCce-eccCc
Q 004972          306 RKVAVIG-GGLMGSGIATAHILNNI--YVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK-GVLDY  379 (721)
Q Consensus       306 ~kI~VIG-~G~mG~~iA~~la~~G~--~V~l~d~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~-~~~~~  379 (721)
                      .||+||| +|.+|+++|..++..|+  +++++|++.  +.++.-...+.+...               ...... .+.++
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~---------------~~~~~~i~~~~~   65 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIA---------------YDSNTRVRQGGY   65 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHT---------------TTCCCEEEECCG
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhccc---------------ccCCceEeeCCH
Confidence            4899999 69999999999999987  899999753  332221111211110               011222 24567


Q ss_pred             cccCCCCEEEEccc--C------------ChHHHHHHHHHHHhhCCCCeEEEecCCCCCH--HHHhcccC-CCCcEEE
Q 004972          380 SEFKDVDMVIEAVI--E------------SVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS-SQDRIIG  440 (721)
Q Consensus       380 ~~l~~aDlVIeavp--e------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i--~~l~~~~~-~~~r~ig  440 (721)
                      +++++||+||.+.-  .            +..+.+++..++.++.+ +.+++..|....+  ..+.+... .+.|++|
T Consensus        66 ~~~~~aDiVvitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p-~~i~ivvtNPvDvmt~~~~k~sg~~~~rViG  142 (142)
T d1o6za1          66 EDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHND-DYISLTTSNPVDLLNRHLYEAGDRSREQVIG  142 (142)
T ss_dssp             GGGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCS-CCEEEECCSSHHHHHHHHHHHSSSCGGGEEE
T ss_pred             HHhhhcCEEEEecccccccCCchhhHHHHHHHHHHHHHHHHHhcCC-CceEEEecChHHHHHHHHHHHHCcCcccccC
Confidence            88999999998762  1            34566667777777764 4555544443322  22223333 3456665

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.15  E-value=5.4e-06  Score=76.35  Aligned_cols=123  Identities=18%  Similarity=0.180  Sum_probs=71.5

Q ss_pred             eeEEEEcCCCCcHHH--HHHHHHC----CCceEEEeCCHHHH--HHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceecc
Q 004972          306 RKVAVIGGGLMGSGI--ATAHILN----NIYVVLKEVNSEYL--LKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL  377 (721)
Q Consensus       306 ~kI~VIG~G~mG~~i--A~~la~~----G~~V~l~d~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  377 (721)
                      +||+|||+|..|.+.  +..+...    +-+++++|++++..  +..-......+.   ..+ .        .-++..++
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~---~~~-~--------~~~~~~~t   69 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVE---KAG-V--------PIEIHLTL   69 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHH---HTT-C--------CCEEEEES
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHH---hcC-C--------CceeeecC
Confidence            489999999988643  3333332    23899999988652  221110111111   111 0        02355566


Q ss_pred             Cc-cccCCCCEEEEcccC----------------------------------ChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972          378 DY-SEFKDVDMVIEAVIE----------------------------------SVPLKQKIFSELEKACPPHCILATNTST  422 (721)
Q Consensus       378 ~~-~~l~~aDlVIeavpe----------------------------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~  422 (721)
                      |. +++++||+||.++.-                                  +..+.+++.+++.+++ |+++++..|..
T Consensus        70 d~~~al~gaDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~-pda~~i~vtNP  148 (169)
T d1s6ya1          70 DRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELC-PDAWLINFTNP  148 (169)
T ss_dssp             CHHHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSS
T ss_pred             CchhhcCCCCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcC-CCeEEEEeCCh
Confidence            65 778999999999841                                  2334567778888886 56666654544


Q ss_pred             CCH-HHHhcccCCCCcEEEe
Q 004972          423 IDL-NIVGEKTSSQDRIIGA  441 (721)
Q Consensus       423 ~~i-~~l~~~~~~~~r~ig~  441 (721)
                      ..+ +........+.|++|+
T Consensus       149 vdv~t~~~~k~~p~~kviGl  168 (169)
T d1s6ya1         149 AGMVTEAVLRYTKQEKVVGL  168 (169)
T ss_dssp             HHHHHHHHHHHCCCCCEEEC
T ss_pred             HHHHHHHHHHHCCCCCEEee
Confidence            332 3333333345688875

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.12  E-value=6.8e-06  Score=75.10  Aligned_cols=73  Identities=19%  Similarity=0.134  Sum_probs=48.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHH--C----CCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc
Q 004972          306 RKVAVIGGGLMGSGIATAHIL--N----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  379 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~--~----G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  379 (721)
                      +||+|||+|..|.+.+.....  .    +.+++++|+++++++...+ ..+   ......           ..+..+++.
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d-~~~---~~~~~~-----------~~~~~t~~~   65 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVD-FVK---RLVKDR-----------FKVLISDTF   65 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHH-HHH---HHHTTS-----------SEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHH-HHH---hhhccC-----------ceEEEecCc
Confidence            489999999999988864332  2    3589999999998764332 111   111111           124444444


Q ss_pred             -cccCCCCEEEEccc
Q 004972          380 -SEFKDVDMVIEAVI  393 (721)
Q Consensus       380 -~~l~~aDlVIeavp  393 (721)
                       +++++||+||.+.-
T Consensus        66 ~~~l~~aDvVVita~   80 (162)
T d1up7a1          66 EGAVVDAKYVIFQFR   80 (162)
T ss_dssp             HHHHTTCSEEEECCC
T ss_pred             ccccCCCCEEEEecc
Confidence             78999999998874

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.10  E-value=6.1e-06  Score=73.67  Aligned_cols=104  Identities=13%  Similarity=0.153  Sum_probs=66.0

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcccc
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  382 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l  382 (721)
                      .||+|||+ |.+|+++|..++..|+  +++++|+++...+. .       +-..... ..     .....+...++++++
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a-~-------Dl~~~~~-~~-----~~~~~~~~~~~~~~~   66 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVA-A-------DLSHIET-RA-----TVKGYLGPEQLPDCL   66 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHH-H-------HHTTSSS-SC-----EEEEEESGGGHHHHH
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhh-H-------HHhhhhh-hc-----CCCeEEcCCChHHHh
Confidence            38999996 9999999999999987  79999998754322 1       1000000 00     000112222334778


Q ss_pred             CCCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCeEEEecCCCCC
Q 004972          383 KDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTSTID  424 (721)
Q Consensus       383 ~~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~  424 (721)
                      ++||+||.+.-              .+..+.+++..++.++. ++++++..|....
T Consensus        67 ~~aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~-p~~iiivvtNPvD  121 (144)
T d1mlda1          67 KGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHC-PDAMICIISNPVN  121 (144)
T ss_dssp             TTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSCHH
T ss_pred             CCCCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcC-CCeEEEEecCchh
Confidence            99999998753              14456777778888885 4566655555443

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.94  E-value=4.7e-06  Score=77.57  Aligned_cols=109  Identities=12%  Similarity=0.063  Sum_probs=77.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|+|||.|.+|..+|..+..-|.+|+.||+++..                  +            .....+++ +.+++
T Consensus        43 k~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~------------------~------------~~~~~~~l~ell~~   92 (181)
T d1qp8a1          43 EKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKE------------------G------------PWRFTNSLEEALRE   92 (181)
T ss_dssp             CEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCC------------------S------------SSCCBSCSHHHHTT
T ss_pred             ceEEEeccccccccceeeeeccccccccccccccc------------------c------------ceeeeechhhhhhc
Confidence            68999999999999999999999999999987532                  0            11123445 56899


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccC-CCCcEEEecCC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS-SQDRIIGAHFF  444 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~-~~~r~ig~h~~  444 (721)
                      ||+|+.++|-+.+.+.-+=.+....++++++|+..+-+  +.-..+.+.+. .+....++..+
T Consensus        93 sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~~i~~aalDV~  155 (181)
T d1qp8a1          93 ARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVW  155 (181)
T ss_dssp             CSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCC
T ss_pred             cchhhcccccccccccccccceeeeccccceEEeccccccccchhhhhhcccCcEEEEEEecC
Confidence            99999999977765544446677778999998754433  44456655554 23344455643

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.89  E-value=5.1e-06  Score=77.89  Aligned_cols=44  Identities=20%  Similarity=0.219  Sum_probs=39.6

Q ss_pred             eeEEEE-cCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHH
Q 004972          306 RKVAVI-GGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIE  349 (721)
Q Consensus       306 ~kI~VI-G~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~  349 (721)
                      |||+|| |+|.||.+||..|+++|++|++|+|++++++...+.+.
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~   45 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYR   45 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            589999 78999999999999999999999999999887765544

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.88  E-value=4.2e-06  Score=74.85  Aligned_cols=103  Identities=17%  Similarity=0.231  Sum_probs=63.9

Q ss_pred             eeEEEEc-CCCCcHHHHHHHHH-CC--CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccc
Q 004972          306 RKVAVIG-GGLMGSGIATAHIL-NN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  381 (721)
Q Consensus       306 ~kI~VIG-~G~mG~~iA~~la~-~G--~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  381 (721)
                      +||+||| +|.+|+++|..++. .+  .++.++|+++.....+. .+.+    .....         ....+..++++++
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~-Dl~h----~~~~~---------~~~~~~~~~~~~~   66 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAV-DLSH----IPTAV---------KIKGFSGEDATPA   66 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHH-HHHT----SCSSC---------EEEEECSSCCHHH
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHH-HHHC----Ccccc---------CCcEEEcCCCccc
Confidence            4899999 59999999998864 34  59999998754321111 1110    00000         0011233556688


Q ss_pred             cCCCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCeEEEecCCCC
Q 004972          382 FKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTSTI  423 (721)
Q Consensus       382 l~~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~  423 (721)
                      +++||+||.+.-              .+..+.+++.+++.++.++. +++..|...
T Consensus        67 ~~~aDvvvitaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~a-ivivvtNPv  121 (145)
T d2cmda1          67 LEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKA-CIGIITNPV  121 (145)
T ss_dssp             HTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTS-EEEECSSSH
T ss_pred             cCCCCEEEECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCc-EEEEccCCc
Confidence            999999998772              14456777778888887554 454444443

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.75  E-value=0.00012  Score=64.05  Aligned_cols=91  Identities=19%  Similarity=0.198  Sum_probs=61.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCcee-ccCc-----
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDY-----  379 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~-----  379 (721)
                      +||.|+|+|.+|..+|..|.+.|++|+++|.+++.++.+.+..          +.          ..+.. .++.     
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~----------~~----------~vi~Gd~~~~~~l~~   60 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI----------DA----------LVINGDCTKIKTLED   60 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC----------SS----------EEEESCTTSHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh----------hh----------hhccCcccchhhhhh
Confidence            5899999999999999999999999999999999987753210          10          01111 1111     


Q ss_pred             cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEe
Q 004972          380 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT  418 (721)
Q Consensus       380 ~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s  418 (721)
                      ..++++|.++.+++.+..  .-+...+.+...+..+++.
T Consensus        61 ~~i~~a~~vv~~t~~d~~--N~~~~~~~k~~~~~~iI~~   97 (132)
T d1lssa_          61 AGIEDADMYIAVTGKEEV--NLMSSLLAKSYGINKTIAR   97 (132)
T ss_dssp             TTTTTCSEEEECCSCHHH--HHHHHHHHHHTTCCCEEEE
T ss_pred             cChhhhhhhcccCCcHHH--HHHHHHHHHHcCCceEEEE
Confidence            336889999988775422  2333445555666666654

>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.74  E-value=4.6e-05  Score=70.54  Aligned_cols=131  Identities=16%  Similarity=0.183  Sum_probs=90.4

Q ss_pred             CCHHHHHHHHHHHHHHhcC---CCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEE
Q 004972           28 LAIPIVAGLKDKFEEATSR---DDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (721)
Q Consensus        28 l~~~~~~~l~~~l~~~~~~---~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaa  104 (721)
                      ++.++..++...+..++.+   +++. +.|.+.      |+|+..                ...++ +.+..++.|+...
T Consensus        22 I~~~~~~~~i~~l~~l~~~~~~~~I~-l~InS~------GG~v~~----------------gl~i~-d~i~~~~~~v~t~   77 (179)
T d2cbya1          22 VNDEIANRLCAQILLLAAEDASKDIS-LYINSP------GGSISA----------------GMAIY-DTMVLAPCDIATY   77 (179)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEE-EEEEEC------CBCHHH----------------HHHHH-HHHHHCSSCEEEE
T ss_pred             ECHHHHHHHHHHHHHHhccCCCCeEE-EEeeCC------CCCHHH----------------HHHHH-HHHHhhccceeee
Confidence            7888888888877655432   2333 334543      344332                12445 6678899999999


Q ss_pred             ECCcccccchHhhhhcC--EEEeeCCceEeCcccccCcccc--c-----------------cccccc--cCHHHHHHHHH
Q 004972          105 VEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPG--T-----------------QRLPRL--VGLSKAIEMML  161 (721)
Q Consensus       105 v~G~a~GgG~~lalacD--~ria~~~a~~~~pe~~~Gl~P~--~-----------------~~l~r~--~G~~~a~~l~l  161 (721)
                      +.|.|.+.|.-+.+++|  .|++.++++|-+.+...|. .|  .                 ..+.+.  .....-.+++-
T Consensus        78 ~~G~aaS~a~~il~ag~k~~R~~~~~s~~miH~~~~~~-~G~~~~i~~~~~~l~~~~~~i~~i~a~~tg~~~~~i~~~~~  156 (179)
T d2cbya1          78 AMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGV-TGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSD  156 (179)
T ss_dssp             EEEEEETHHHHHHHTSCTTCEEECTTCEEECCCC-----------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             hhhhhhhHHHHHHHcCCCCceEECCchHhhcCCCchhc-CCccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhc
Confidence            99999999999999999  8999999999998876554 33  1                 111111  23444456667


Q ss_pred             cCCCcCHHHHHHcCCccEEcCC
Q 004972          162 LSKSITSEEGWKLGLIDAVVTS  183 (721)
Q Consensus       162 tg~~~~a~eA~~~Glv~~vv~~  183 (721)
                      .-..++|+||+++||||+|+.+
T Consensus       157 ~d~~l~a~EA~~~GliDeIi~~  178 (179)
T d2cbya1         157 RDRWFTAAEALEYGFVDHIITR  178 (179)
T ss_dssp             TTCEEEHHHHHHHTSCSEECSC
T ss_pred             CCceecHHHHHHcCCCcEEecC
Confidence            7788999999999999999864

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.70  E-value=5e-05  Score=66.66  Aligned_cols=91  Identities=18%  Similarity=0.155  Sum_probs=61.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCcee-ccCc-----
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDY-----  379 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~-----  379 (721)
                      +++.|+|+|.+|..+|..|.+.|++|+++|.+++.++.+.           +.+.          ..+.. .++.     
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~-----------~~~~----------~~~~gd~~~~~~l~~   59 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYA-----------SYAT----------HAVIANATEENELLS   59 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTT-----------TTCS----------EEEECCTTCTTHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHH-----------HhCC----------cceeeecccchhhhc
Confidence            4789999999999999999999999999999999987752           1111          00111 1111     


Q ss_pred             cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEe
Q 004972          380 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT  418 (721)
Q Consensus       380 ~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s  418 (721)
                      ..+.+||.||.+++++.... .+...+.+..+...+++-
T Consensus        60 a~i~~a~~vi~~~~~~~~~~-~~~~~~~~~~~~~~iiar   97 (134)
T d2hmva1          60 LGIRNFEYVIVAIGANIQAS-TLTTLLLKELDIPNIWVK   97 (134)
T ss_dssp             HTGGGCSEEEECCCSCHHHH-HHHHHHHHHTTCSEEEEE
T ss_pred             cCCccccEEEEEcCchHHhH-HHHHHHHHHcCCCcEEee
Confidence            23688999999999765532 223344455555556553

>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Escherichia coli [TaxId: 562]

Probab=97.64  E-value=3.1e-05  Score=72.10  Aligned_cols=133  Identities=13%  Similarity=0.118  Sum_probs=91.6

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCce--EEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEE
Q 004972           28 LAIPIVAGLKDKFEEATSRDDVK--AIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (721)
Q Consensus        28 l~~~~~~~l~~~l~~~~~~~~v~--~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav  105 (721)
                      ++.++...+...+..++.++..+  .+.|.+.      |+|+..                ...++ +.|..++.|+...+
T Consensus        25 I~~~~~~~~i~~l~~l~~~~~~~~I~l~InS~------GG~v~~----------------g~~i~-d~i~~~~~~v~tv~   81 (183)
T d1yg6a1          25 VEDHMANLIVAQMLFLEAENPEKDIYLYINSP------GGVITA----------------GMSIY-DTMQFIKPDVSTIC   81 (183)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEEEEEEEC------CBCHHH----------------HHHHH-HHHHHSSSCEEEEE
T ss_pred             ECHHHHHHHHHHHHHhhhhccCCceEEEEeCC------CccHHH----------------HHHHH-HHHHhCCCCEEEEE
Confidence            77888888888888776433222  2334544      344322                22455 66888999999999


Q ss_pred             CCcccccchHhhhhcC--EEEeeCCceEeCcccccCcccc---c---------------cccccc--cCHHHHHHHHHcC
Q 004972          106 EGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPG---T---------------QRLPRL--VGLSKAIEMMLLS  163 (721)
Q Consensus       106 ~G~a~GgG~~lalacD--~ria~~~a~~~~pe~~~Gl~P~---~---------------~~l~r~--~G~~~a~~l~ltg  163 (721)
                      .|.|.+.|.-+.++||  .|++.++++|-+.+...|....   .               ..+.+.  .....-.+++-.-
T Consensus        82 ~G~aaS~a~~I~~ag~~~~R~~~~ns~~miH~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~tg~~~e~i~~~~~~d  161 (183)
T d1yg6a1          82 MGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERD  161 (183)
T ss_dssp             EEEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTSSC
T ss_pred             EEEeHHHHHHHHHcCCCCceeeCCCceEEecccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhccC
Confidence            9999999999999998  7999999999888876554321   0               011111  2333344554444


Q ss_pred             CCcCHHHHHHcCCccEEcCC
Q 004972          164 KSITSEEGWKLGLIDAVVTS  183 (721)
Q Consensus       164 ~~~~a~eA~~~Glv~~vv~~  183 (721)
                      ..++|+||+++|+||+|+..
T Consensus       162 ~~lta~EAl~~GliD~Ii~~  181 (183)
T d1yg6a1         162 RFLSAPEAVEYGLVDSILTH  181 (183)
T ss_dssp             EEEEHHHHHHHTSSSEECCC
T ss_pred             ccccHHHHHHcCCCcEEecc
Confidence            55899999999999999864

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=97.63  E-value=1.2e-05  Score=75.75  Aligned_cols=112  Identities=13%  Similarity=0.073  Sum_probs=75.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|||||.|.+|..+|..+..-|.+|..||+........             .             ... ..++ +.+++
T Consensus        44 k~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~~-------------~-------------~~~-~~~l~~~l~~   96 (197)
T d1j4aa1          44 QVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEK-------------K-------------GYY-VDSLDDLYKQ   96 (197)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHH-------------T-------------TCB-CSCHHHHHHH
T ss_pred             CeEEEecccccchhHHHhHhhhcccccccCccccccccc-------------c-------------eee-eccccccccc
Confidence            689999999999999999999999999999875431110             0             111 2334 55789


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccC-CCCcEEEecCC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS-SQDRIIGAHFF  444 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~-~~~r~ig~h~~  444 (721)
                      ||+|+.++|-+.+.+.-+=.+....++++++++..+-+  +.-..+.+.+. ..-.-.++.-|
T Consensus        97 sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~~a~lDV~  159 (197)
T d1j4aa1          97 ADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVY  159 (197)
T ss_dssp             CSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCC
T ss_pred             cccccccCCccccccccccHHHHhhhCCccEEEecCchhhhhhHHHHHHHhcccchheeeecc
Confidence            99999999977766554445666778999988743323  34445555543 22233445544

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=97.60  E-value=1.2e-05  Score=75.57  Aligned_cols=103  Identities=14%  Similarity=0.046  Sum_probs=72.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|||||.|.+|..+|..+..-|.+|..||+....-...            .             ..+...+++ +.++.
T Consensus        50 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~------------~-------------~~~~~~~~l~~ll~~  104 (193)
T d1mx3a1          50 ETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVER------------A-------------LGLQRVSTLQDLLFH  104 (193)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTHHH------------H-------------HTCEECSSHHHHHHH
T ss_pred             ceEEEeccccccccceeeeeccccceeeccCcccccchh------------h-------------hccccccchhhcccc
Confidence            589999999999999999999999999999864421110            0             123334455 55799


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS  433 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~  433 (721)
                      ||+|+.++|-+.+.+.-+=.+....++++++++..+-+  +.-..+.+.+.
T Consensus       105 sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~  155 (193)
T d1mx3a1         105 SDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALK  155 (193)
T ss_dssp             CSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred             CCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCceEEcHHHHHHHHH
Confidence            99999999976665554445666778999988743333  34445555554

>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.60  E-value=0.00015  Score=67.75  Aligned_cols=133  Identities=16%  Similarity=0.202  Sum_probs=90.1

Q ss_pred             CCCHHHHHHHHHHHHHHhcCC---CceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEE
Q 004972           27 ALAIPIVAGLKDKFEEATSRD---DVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA  103 (721)
Q Consensus        27 al~~~~~~~l~~~l~~~~~~~---~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Ia  103 (721)
                      .++.++...+...+..++.++   ++. +.|.+.|      +|+..                ...++ +.+..++.|+..
T Consensus        32 ~I~~~~~~~~~~~l~~l~~~~~~~~I~-l~InS~G------G~v~~----------------glai~-d~i~~~~~~v~t   87 (192)
T d1y7oa1          32 PVEDNMANSVIAQLLFLDAQDSTKDIY-LYVNTPG------GSVSA----------------GLAIV-DTMNFIKADVQT   87 (192)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCTTSCEE-EEEEECC------BCHHH----------------HHHHH-HHHHHSSSCEEE
T ss_pred             EEchHHHHHHHHHHHHhhhhcccCcee-eeecCCC------CCHHH----------------HHHHH-HHHHhcCcceEE
Confidence            378888888888887765322   333 4445544      33221                22455 668889999999


Q ss_pred             EECCcccccchHhhhh--cCEEEeeCCceEeCcccccCcccc---c--cc----c-----------ccc--cCHHHHHHH
Q 004972          104 AVEGLALGGGLELAMG--CHARIAAPKTQLGLPELTLGVIPG---T--QR----L-----------PRL--VGLSKAIEM  159 (721)
Q Consensus       104 av~G~a~GgG~~lala--cD~ria~~~a~~~~pe~~~Gl~P~---~--~~----l-----------~r~--~G~~~a~~l  159 (721)
                      .+.|.|.+.|.-++++  ||.|++.++++|-+.+...|....   .  ..    +           ...  .......+.
T Consensus        88 ~~~G~aaS~as~il~aG~~g~R~~~pns~~miHq~~~~~~G~~~~~~~~~~~~el~~~~~~i~~i~~~~tg~~~~~i~~~  167 (192)
T d1y7oa1          88 IVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVHAD  167 (192)
T ss_dssp             EEEEEEETHHHHHHTTSCTTCEEECTTCEEECCCCC--------------CHHHHHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             EeccccCCccceeeeecCCCccccchHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHh
Confidence            9999999999888775  689999999999998887765432   0  00    1           001  233444566


Q ss_pred             HHcCCCcCHHHHHHcCCccEEcCC
Q 004972          160 MLLSKSITSEEGWKLGLIDAVVTS  183 (721)
Q Consensus       160 ~ltg~~~~a~eA~~~Glv~~vv~~  183 (721)
                      +-...-++|+||+++||||+|+..
T Consensus       168 ~~rd~~lsa~EAleyGliD~Ii~~  191 (192)
T d1y7oa1         168 AERDNWMSAQETLEYGFIDEIMAN  191 (192)
T ss_dssp             HHSCCCBCHHHHHHHTSCSEECCC
T ss_pred             hcCCceecHHHHHHcCCCcEEecC
Confidence            667778999999999999999853

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=97.58  E-value=6e-05  Score=69.33  Aligned_cols=123  Identities=13%  Similarity=0.134  Sum_probs=73.7

Q ss_pred             ceeEEEEcC-CCCcHHHHHHHHHCCC-------ceEEEeCCHHH--HHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCce
Q 004972          305 VRKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSEY--LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK  374 (721)
Q Consensus       305 ~~kI~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~  374 (721)
                      ..||+|+|+ |.+|.+++..|++...       ++.++|+++..  ++...    -.+    .....      .....+.
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~----mdl----~d~a~------~~~~~~~   89 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVA----MEL----EDSLY------PLLREVS   89 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHH----HHH----HTTTC------TTEEEEE
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchh----hhh----ccccc------ccccCcc
Confidence            458999996 9999999999998642       67778876543  22111    001    10000      0112344


Q ss_pred             eccC-ccccCCCCEEEEccc--------------CChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH-HHhcc-c-C-CC
Q 004972          375 GVLD-YSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEK-T-S-SQ  435 (721)
Q Consensus       375 ~~~~-~~~l~~aDlVIeavp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~-~l~~~-~-~-~~  435 (721)
                      .+++ +++++++|+||...-              .+..+.+++.+.+.++++++++|+..+....+. .++.. . . ++
T Consensus        90 ~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd~~t~ia~k~a~~ip~  169 (175)
T d7mdha1          90 IGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALICLKNAPDIPA  169 (175)
T ss_dssp             EESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCG
T ss_pred             ccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHHHHHHHHHHHCCCCCH
Confidence            4444 588999999997762              134566777778899999888665544433322 22222 2 2 35


Q ss_pred             CcEEEe
Q 004972          436 DRIIGA  441 (721)
Q Consensus       436 ~r~ig~  441 (721)
                      +||+++
T Consensus       170 ~~i~~m  175 (175)
T d7mdha1         170 KNFHAL  175 (175)
T ss_dssp             GGEEEC
T ss_pred             HHEeCC
Confidence            677664

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.57  E-value=2.9e-05  Score=71.53  Aligned_cols=39  Identities=18%  Similarity=0.123  Sum_probs=36.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  344 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  344 (721)
                      +||.|||+|.||..+|..|++.|++|+++|++.++++..
T Consensus         3 K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l   41 (182)
T d1e5qa1           3 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKL   41 (182)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHH
Confidence            689999999999999999999999999999999987764

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.54  E-value=5.7e-05  Score=68.15  Aligned_cols=124  Identities=15%  Similarity=0.108  Sum_probs=71.9

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCC-------ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceecc
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL  377 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  377 (721)
                      .||+|||+ |.+|.++|..|++.+.       +++++|.++..... .. ..-.    ......      .....+..++
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~-~~-l~~~----~~~~~~------~~~~~~~~~~   71 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVL-DG-VLME----LQDCAL------PLLKDVIATD   71 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHH-HH-HHHH----HHHTCC------TTEEEEEEES
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhh-hh-hhhh----hccccc------ccccccccCc
Confidence            49999996 9999999999987643       57888876543221 10 0000    000000      0112344444


Q ss_pred             C-ccccCCCCEEEEccc--C------------ChHHHHHHHHHHHhhCCCCeEEEecCCCCCH-HHHh-ccc-C-CCCcE
Q 004972          378 D-YSEFKDVDMVIEAVI--E------------SVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVG-EKT-S-SQDRI  438 (721)
Q Consensus       378 ~-~~~l~~aDlVIeavp--e------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i-~~l~-~~~-~-~~~r~  438 (721)
                      + +++++++|+||.+..  .            +..+.+++..++.++++.+.+++..|....+ +.++ +.. . .++|+
T Consensus        72 ~~~~~~~~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsNPvD~mt~v~~k~s~g~P~~~v  151 (154)
T d5mdha1          72 KEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENF  151 (154)
T ss_dssp             CHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGE
T ss_pred             ccccccCCceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecCcHHHHHHHHHHHcCCCCHHHE
Confidence            4 478999999998762  1            2456777777888888888754433333222 2222 223 3 34677


Q ss_pred             EEe
Q 004972          439 IGA  441 (721)
Q Consensus       439 ig~  441 (721)
                      +|+
T Consensus       152 ~~m  154 (154)
T d5mdha1         152 SCL  154 (154)
T ss_dssp             EEC
T ss_pred             eCC
Confidence            664

>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.50  E-value=0.00018  Score=66.98  Aligned_cols=132  Identities=14%  Similarity=0.151  Sum_probs=91.5

Q ss_pred             CCHHHHHHHHHHHHHHhcC--CCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEE
Q 004972           28 LAIPIVAGLKDKFEEATSR--DDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (721)
Q Consensus        28 l~~~~~~~l~~~l~~~~~~--~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav  105 (721)
                      ++.++..++...+..+++.  +++ -+.|.+.      |+|+..                ...++ +.+..++.|+...+
T Consensus        27 Id~~~~~~~i~~l~~l~~~~~~~I-~l~INS~------GG~v~~----------------g~ai~-d~i~~~~~~v~tv~   82 (190)
T d2f6ia1          27 INKKTADELISQLLYLDNINHNDI-KIYINSP------GGSINE----------------GLAIL-DIFNYIKSDIQTIS   82 (190)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCCSCE-EEEEEEC------CBCHHH----------------HHHHH-HHHHHSSSCEEEEE
T ss_pred             eCHHHHHHHHHHHHHHhccCCCCe-EEEEeCc------hhhhhH----------------HHHHH-HHHHhhCCceEEEE
Confidence            7888888888888777642  334 3334443      344332                22445 66788999999999


Q ss_pred             CCcccccchHhhhhcC--EEEeeCCceEeCcccccCcccccc------------------ccccccC--HHHHHHHHHcC
Q 004972          106 EGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGTQ------------------RLPRLVG--LSKAIEMMLLS  163 (721)
Q Consensus       106 ~G~a~GgG~~lalacD--~ria~~~a~~~~pe~~~Gl~P~~~------------------~l~r~~G--~~~a~~l~ltg  163 (721)
                      .|.|.+.|.-+++++|  .|++.++++|-+.+...|..-...                  .+.+..|  ...-.+++-.-
T Consensus        83 ~G~aaS~a~~i~~aG~kg~R~~~pns~imiH~~s~~~~G~~~di~~~~~~l~~~~~~~~~i~a~~tg~~~~~i~~~~~~d  162 (190)
T d2f6ia1          83 FGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSDRD  162 (190)
T ss_dssp             EEEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC--------CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHTT
T ss_pred             eccccchhHHHHHhCCCCccccCCCcEEEEcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhccCC
Confidence            9999999999999988  699999999999988777532110                  1111112  22333444455


Q ss_pred             CCcCHHHHHHcCCccEEcCC
Q 004972          164 KSITSEEGWKLGLIDAVVTS  183 (721)
Q Consensus       164 ~~~~a~eA~~~Glv~~vv~~  183 (721)
                      ..++|+||+++||||+|+..
T Consensus       163 ~~l~a~EAl~~GliD~Ii~~  182 (190)
T d2f6ia1         163 YYMNALEAKQYGIIDEVIET  182 (190)
T ss_dssp             CEECHHHHHHHTSCSEECCC
T ss_pred             eeecHHHHHHcCCCcEEccc
Confidence            66899999999999999853

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=97.48  E-value=2.9e-05  Score=72.65  Aligned_cols=115  Identities=10%  Similarity=-0.015  Sum_probs=77.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|+|||.|.+|..+|..+..-|.+|..||+....-....                       . ..+....++ +.+++
T Consensus        45 ~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~-----------------------~-~~~~~~~~l~~~l~~  100 (188)
T d2naca1          45 MHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEK-----------------------E-LNLTWHATREDMYPV  100 (188)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHH-----------------------H-HTCEECSSHHHHGGG
T ss_pred             cceeeccccccchhhhhhhhccCceEEEEeeccccccccc-----------------------c-ccccccCCHHHHHHh
Confidence            6899999999999999999999999999998643211110                       0 112334444 66899


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccCCC-CcEEEecCC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQ-DRIIGAHFF  444 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~~~-~r~ig~h~~  444 (721)
                      ||+|+.++|-+.+.+.-+=++....++++++|+..+-+  +....+.+.+... -.-.++..|
T Consensus       101 sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~g~i~ga~lDV~  163 (188)
T d2naca1         101 CDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVW  163 (188)
T ss_dssp             CSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESCC
T ss_pred             ccchhhcccccccchhhhHHHHHHhCCCCCEEEecCchhhhhHHHHHHHHhCCCceeEEEeCC
Confidence            99999999977766555556677788999988643333  4445666655432 222345443

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.44  E-value=9e-05  Score=67.12  Aligned_cols=95  Identities=15%  Similarity=0.184  Sum_probs=64.0

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  382 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  382 (721)
                      -++|.|||+|.||..++..|...|. +|++++|+.++++.....+          +           ......+++ +.+
T Consensus        24 ~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~----------~-----------~~~~~~~~~~~~l   82 (159)
T d1gpja2          24 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL----------G-----------GEAVRFDELVDHL   82 (159)
T ss_dssp             TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHH----------T-----------CEECCGGGHHHHH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhh----------h-----------cccccchhHHHHh
Confidence            3689999999999999999999998 6999999998876643211          0           011112233 567


Q ss_pred             CCCCEEEEcccCCh-HHHHHHHHHHHhhCC--CCeEEEecC
Q 004972          383 KDVDMVIEAVIESV-PLKQKIFSELEKACP--PHCILATNT  420 (721)
Q Consensus       383 ~~aDlVIeavpe~~-~~k~~v~~~l~~~~~--~~~ii~s~t  420 (721)
                      .++|+||.|++.+. -+.++.++.....-+  ...+|++.+
T Consensus        83 ~~~Divi~atss~~~ii~~~~i~~~~~~r~~~~~~~iiDla  123 (159)
T d1gpja2          83 ARSDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIA  123 (159)
T ss_dssp             HTCSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECC
T ss_pred             ccCCEEEEecCCCCccccHhhhHHHHHhcccCCCeEEEeec
Confidence            89999999996432 344566655444332  334666654

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=97.42  E-value=4.5e-05  Score=68.84  Aligned_cols=103  Identities=16%  Similarity=0.097  Sum_probs=62.6

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCC-------ceEEEeCC--HHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCcee
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVN--SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG  375 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  375 (721)
                      .||+|||+ |.+|..+|..|+..++       ...+++.+  .+.++.....    +...  ..        .....+..
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~--~~--------~~~~~~~~   70 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVME----LEDC--AF--------PLLAGLEA   70 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHH----HHTT--TC--------TTEEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhh----hhcc--cc--------cccccccc
Confidence            48999997 9999999999998764       13344433  3333322110    0000  00        01122333


Q ss_pred             cc-CccccCCCCEEEEccc--C------------ChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972          376 VL-DYSEFKDVDMVIEAVI--E------------SVPLKQKIFSELEKACPPHCILATNTST  422 (721)
Q Consensus       376 ~~-~~~~l~~aDlVIeavp--e------------~~~~k~~v~~~l~~~~~~~~ii~s~ts~  422 (721)
                      ++ +++++++||+||.+.-  .            +..+.+++..++.++++++++++..|..
T Consensus        71 ~~~~~~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNP  132 (154)
T d1y7ta1          71 TDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNP  132 (154)
T ss_dssp             ESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred             CCchhhhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCc
Confidence            33 3478999999998762  1            3456677777888888888877654543

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=97.40  E-value=1.7e-05  Score=74.94  Aligned_cols=100  Identities=15%  Similarity=0.052  Sum_probs=70.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      ++|||||.|.+|..+|..+..-|.+|+.||+.......                           ..... .++ +.++.
T Consensus        46 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~---------------------------~~~~~-~~l~~l~~~   97 (199)
T d1dxya1          46 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGDH---------------------------PDFDY-VSLEDLFKQ   97 (199)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSCC---------------------------TTCEE-CCHHHHHHH
T ss_pred             eeeeeeecccccccccccccccceeeeccCCccchhhh---------------------------cchhH-HHHHHHHHh
Confidence            68999999999999999999999999999986532000                           01222 233 45688


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS  433 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~  433 (721)
                      ||+|+.++|-+.+.+.-+=++....++++++++..+-+  +.-.++.+.+.
T Consensus        98 ~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~  148 (199)
T d1dxya1          98 SDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLK  148 (199)
T ss_dssp             CSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred             cccceeeecccccccccccHHHhhccCCceEEEecccHhhhhhHHHHHHHh
Confidence            99999999987776554445666778999988743333  33455555554

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=97.38  E-value=7.5e-05  Score=69.79  Aligned_cols=115  Identities=12%  Similarity=0.047  Sum_probs=77.5

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  383 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  383 (721)
                      -++|||||.|.+|..+|..+..-|.+|..||+..........                        .......++ +.++
T Consensus        47 g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~------------------------~~~~~~~~l~~ll~  102 (191)
T d1gdha1          47 NKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEAS------------------------YQATFHDSLDSLLS  102 (191)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHH------------------------HTCEECSSHHHHHH
T ss_pred             ccceEEeecccchHHHHHHHHhhccccccccccccccchhhc------------------------ccccccCCHHHHHh
Confidence            368999999999999999999999999999986543221100                        012223344 5678


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCC-C--CCHHHHhcccCC-CCcEEEecCC
Q 004972          384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-T--IDLNIVGEKTSS-QDRIIGAHFF  444 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts-~--~~i~~l~~~~~~-~~r~ig~h~~  444 (721)
                      .||+|+.++|-+.+.+.-+=++....++++++|+ |++ +  +.-..+.+.+.. .-...++..|
T Consensus       103 ~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lI-N~sRG~ivde~aL~~aL~~g~i~~a~lDV~  166 (191)
T d1gdha1         103 VSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVV-NTARGDLVDNELVVAALEAGRLAYAGFDVF  166 (191)
T ss_dssp             HCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEE-ECSCGGGBCHHHHHHHHHHTSEEEEEESCC
T ss_pred             hCCeEEecCCCCchHhheecHHHhhCcCCccEEE-ecCCccchhhHHHHHHHHcCCceEEEEECC
Confidence            9999999999777765544466777889999886 455 3  333455555542 2233455544

>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=97.36  E-value=0.00038  Score=64.86  Aligned_cols=132  Identities=14%  Similarity=0.200  Sum_probs=91.8

Q ss_pred             CCCHHHHHHHHHHHHHHhcC---CCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEE
Q 004972           27 ALAIPIVAGLKDKFEEATSR---DDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA  103 (721)
Q Consensus        27 al~~~~~~~l~~~l~~~~~~---~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Ia  103 (721)
                      -++.++...+...+..++..   .++. +.|.+.|+      |+.                ....++ +.+..++.|+..
T Consensus        34 ~I~~~~~~~~i~~l~~l~~~~~~~~I~-l~InS~GG------~v~----------------~g~~i~-d~i~~~~~~V~t   89 (193)
T d1tg6a1          34 PIDDSVASLVIAQLLFLQSESNKKPIH-MYINSPGG------VVT----------------AGLAIY-DTMQYILNPICT   89 (193)
T ss_dssp             SBCHHHHHHHHHHHHHHHHHCSSSCEE-EEEEECCB------CHH----------------HHHHHH-HHHHHSCSCEEE
T ss_pred             EEchHHHHHHHHHHHHhcccCCCcEEE-EEeecCcc------cHH----------------HHHHHH-HHHHhhcCceEE
Confidence            37888888888877776633   2343 33355443      321                122455 668889999999


Q ss_pred             EECCcccccchHhhhhcC--EEEeeCCceEeCcccccCcccc-c---------cc--------cccc--cCHHHHHHHHH
Q 004972          104 AVEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPG-T---------QR--------LPRL--VGLSKAIEMML  161 (721)
Q Consensus       104 av~G~a~GgG~~lalacD--~ria~~~a~~~~pe~~~Gl~P~-~---------~~--------l~r~--~G~~~a~~l~l  161 (721)
                      .+.|.|.+.|.-+.+++|  .|++.++++|-+.+...|..-. .         ..        +...  .......+++-
T Consensus        90 v~~G~aaS~a~~il~aG~~g~R~~~pns~~miHq~~~~~~G~~~di~~~~~el~~~~~~i~~i~a~~Tg~~~~~i~~~~~  169 (193)
T d1tg6a1          90 WCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAME  169 (193)
T ss_dssp             EEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHS
T ss_pred             EEccchHHHHHHHhhcCccCccccCcccHHHhcCCccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhc
Confidence            999999999999999999  5999999999998887665322 0         01        1111  23334445554


Q ss_pred             cCCCcCHHHHHHcCCccEEcC
Q 004972          162 LSKSITSEEGWKLGLIDAVVT  182 (721)
Q Consensus       162 tg~~~~a~eA~~~Glv~~vv~  182 (721)
                      .-.-++|+||+++||||+|+.
T Consensus       170 rD~~lta~EAl~yGliD~Ii~  190 (193)
T d1tg6a1         170 RDRYMSPMEAQEFGILDKVLV  190 (193)
T ss_dssp             SCEEECHHHHHHHTSCSEECS
T ss_pred             cCccCCHHHHHHcCCCCEEcc
Confidence            445599999999999999984

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=0.00012  Score=65.82  Aligned_cols=97  Identities=14%  Similarity=0.111  Sum_probs=67.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  385 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  385 (721)
                      ++|+|+|.|.+|.++|..+...|..|+++|++|-..-++.                        +......+-.+++..+
T Consensus        25 k~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~------------------------~dG~~v~~~~~a~~~a   80 (163)
T d1li4a1          25 KVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAA------------------------MEGYEVTTMDEACQEG   80 (163)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH------------------------HTTCEECCHHHHTTTC
T ss_pred             CEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhh------------------------cCceEeeehhhhhhhc
Confidence            5799999999999999999999999999999996533321                        1122223223668899


Q ss_pred             CEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCC---CCCHHHHhc
Q 004972          386 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS---TIDLNIVGE  430 (721)
Q Consensus       386 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts---~~~i~~l~~  430 (721)
                      |+||.|....-.+..+    -.+.+++++|+++.++   -+.+..+.+
T Consensus        81 divvtaTGn~~vI~~e----h~~~MKdgaIL~N~Ghfd~EId~~~L~~  124 (163)
T d1li4a1          81 NIFVTTTGCIDIILGR----HFEQMKDDAIVCNIGHFDVEIDVKWLNE  124 (163)
T ss_dssp             SEEEECSSCSCSBCHH----HHTTCCTTEEEEECSSSTTSBCHHHHHH
T ss_pred             cEEEecCCCccchhHH----HHHhccCCeEEEEeccccceecHHHHhh
Confidence            9999887643333333    3456789999976554   255555544

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.32  E-value=5e-05  Score=70.64  Aligned_cols=114  Identities=17%  Similarity=0.146  Sum_probs=77.3

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  383 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  383 (721)
                      -++|+|||.|.+|..+|..+..-|.+|+.||+.........                         ..+.. .++ +.++
T Consensus        44 ~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~-------------------------~~~~~-~~l~ell~   97 (184)
T d1ygya1          44 GKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQ-------------------------LGIEL-LSLDDLLA   97 (184)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHHHHHH-------------------------HTCEE-CCHHHHHH
T ss_pred             ceeeeeccccchhHHHHHHhhhccceEEeecCCCChhHHhh-------------------------cCcee-ccHHHHHh
Confidence            36899999999999999999999999999998754422110                         01222 233 5678


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccCCC-CcEEEecCC
Q 004972          384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQ-DRIIGAHFF  444 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~~~-~r~ig~h~~  444 (721)
                      .||+|+.++|-+.+.+.-+=++....++++++++..+-+  +.-..+.+.+... -...++..|
T Consensus        98 ~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~~i~~a~lDV~  161 (184)
T d1ygya1          98 RADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVF  161 (184)
T ss_dssp             HCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSC
T ss_pred             hCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhhhHHHHHHHhcCcEeEEEEeCC
Confidence            999999999977776554445677788999988743333  4445666655432 233445544

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.26  E-value=0.00011  Score=68.52  Aligned_cols=111  Identities=16%  Similarity=0.179  Sum_probs=76.7

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccC
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK  383 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~  383 (721)
                      -++|+|||.|.+|..+|..+...|.+|+.||+......                            .......++ +.++
T Consensus        44 ~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~----------------------------~~~~~~~~l~ell~   95 (188)
T d1sc6a1          44 GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL----------------------------GNATQVQHLSDLLN   95 (188)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCC----------------------------TTCEECSCHHHHHH
T ss_pred             ceEEEEeecccchhhhhhhcccccceEeeccccccchh----------------------------hhhhhhhhHHHHHh
Confidence            36899999999999999999999999999998643200                            011122344 5578


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC--CCHHHHhcccCC-CCcEEEecC
Q 004972          384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSS-QDRIIGAHF  443 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~--~~i~~l~~~~~~-~~r~ig~h~  443 (721)
                      .||+|+.++|-+.+.+.-+=++..+.++++++|+..+-+  +.-.++.+.+.. .....++..
T Consensus        96 ~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~~~~~~a~lDV  158 (188)
T d1sc6a1          96 MSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDV  158 (188)
T ss_dssp             HCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEEC
T ss_pred             hccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHHcCCceEEEEec
Confidence            999999999977776655556777788999988743333  444566665542 333344443

>d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=97.05  E-value=0.0068  Score=58.50  Aligned_cols=140  Identities=16%  Similarity=0.101  Sum_probs=88.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEE
Q 004972           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (721)
Q Consensus        25 ~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaa  104 (721)
                      --+++....+.+..+.+.+.++. +-.|.+.-     |.|+.+.+-...     ...+...+.. + ..+. -..|+|++
T Consensus       102 GGS~g~~~~~K~~~a~e~A~~~~-lPlV~l~~-----sgG~r~~eg~~~-----l~~~~~~~~~-~-~~ls-~~vP~i~v  167 (253)
T d1on3a1         102 GGSAGETQSTKVVETMEQALLTG-TPFLFFYD-----SGGARIQEGIDS-----LSGYGKMFFA-N-VKLS-GVVPQIAI  167 (253)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEE-----ECSBCGGGTHHH-----HHHHHHHHHH-H-HHHT-TTSCEEEE
T ss_pred             cccceecccchhhhhHHHHhhcC-CCeEEEEe-----cCCCccccccee-----ccccceehHH-H-HHHh-ccceEEEE
Confidence            47888888999999988887654 33455532     334444321100     0011111111 1 1233 35899999


Q ss_pred             ECCcccccchHhhhhcCEEEeeCCceEeCcccccCccccccccccccCHHHHHHHHHcCCCcCHHH-------HHHcCCc
Q 004972          105 VEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSEE-------GWKLGLI  177 (721)
Q Consensus       105 v~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~~~~l~r~~G~~~a~~l~ltg~~~~a~e-------A~~~Glv  177 (721)
                      +.|+|+||+......||++|+.+++.+++.                 |+....  ..+|+.++.+|       +..-|.|
T Consensus       168 v~Gp~~GG~a~~~~~~d~vi~~~~a~i~~a-----------------GP~vVe--~~~ge~~~~eelGga~~h~~~sG~i  228 (253)
T d1on3a1         168 IAGPCAGGASYSPALTDFIIMTKKAHMFIT-----------------GPQVIK--SVTGEDVTADELGGAEAHMAISGNI  228 (253)
T ss_dssp             EEEEEESGGGHHHHHSSEEEEETTCEEESS-----------------CHHHHH--HHHCCCCCHHHHHSHHHHHHTTCCC
T ss_pred             EecCcccceeeccchhhheeccccceEEec-----------------Ccchhh--hhhCCcCChHhccCHHHhhhccccc
Confidence            999999999999999999999998888764                 222221  13577777653       3457999


Q ss_pred             cEEcCCchHHHHHHHHHHHHHhc
Q 004972          178 DAVVTSEELLKVSRLWALDIAAR  200 (721)
Q Consensus       178 ~~vv~~~~l~~~a~~~a~~~a~~  200 (721)
                      |.|++.++   .+.+.++++.+.
T Consensus       229 D~v~~~e~---~a~~~~r~lls~  248 (253)
T d1on3a1         229 HFVAEDDD---AAELIAKKLLSF  248 (253)
T ss_dssp             SEEESSHH---HHHHHHHHHHHT
T ss_pred             eEEECCHH---HHHHHHHHHHHh
Confidence            99998754   455666665543

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.97  E-value=0.00066  Score=60.83  Aligned_cols=93  Identities=19%  Similarity=0.167  Sum_probs=68.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHH-HHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  384 (721)
                      ++|+|||.|.-|.+-|++|..+|++|++=-+.... .+++.           +.             .....+-.++++.
T Consensus        17 k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~-----------~~-------------Gf~v~~~~eA~~~   72 (182)
T d1np3a2          17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAE-----------AH-------------GLKVADVKTAVAA   72 (182)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHH-----------HT-------------TCEEECHHHHHHT
T ss_pred             CEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHh-----------hh-------------ccccccHHHHhhh
Confidence            68999999999999999999999999987765432 22221           22             2333333377899


Q ss_pred             CCEEEEcccCChHHHHHHHH-HHHhhCCCCeEEEecCCCCCH
Q 004972          385 VDMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNTSTIDL  425 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~-~l~~~~~~~~ii~s~ts~~~i  425 (721)
                      +|+|...+|  -+.-.+++. ++.++++++..+. -+.++.+
T Consensus        73 aDiim~L~P--D~~q~~vy~~~I~p~lk~g~~L~-FaHGfnI  111 (182)
T d1np3a2          73 ADVVMILTP--DEFQGRLYKEEIEPNLKKGATLA-FAHGFSI  111 (182)
T ss_dssp             CSEEEECSC--HHHHHHHHHHHTGGGCCTTCEEE-ESCCHHH
T ss_pred             cCeeeeecc--hHHHHHHHHHhhhhhcCCCcEEE-EeccceE
Confidence            999999999  555567885 7999999998775 3444444

>d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.92  E-value=0.011  Score=57.14  Aligned_cols=140  Identities=15%  Similarity=0.076  Sum_probs=88.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEE
Q 004972           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (721)
Q Consensus        25 ~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaa  104 (721)
                      .-+++....+.+..+.+.+.++. +-.|.|.-     |.|+.+.+-...     ...+...+ ...  ....-..|+|++
T Consensus       102 gGS~g~~~g~K~~ra~e~A~~~~-lP~I~l~d-----sgGar~~eg~~~-----~~~~~~~~-~~~--~~~~~~vP~I~~  167 (258)
T d2a7sa1         102 GGSLGEVYGEKIVKVQELAIKTG-RPLIGIND-----GAGARIQEGVVS-----LGLYSRIF-RNN--ILASGVIPQISL  167 (258)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEC-----CCSBCGGGCTHH-----HHHHHHHH-HHH--HHHTTTSCEEEE
T ss_pred             CCccchhhhhHHHHHHHHHHhcC-CceEEEec-----cCCccccccccc-----ccchhhHH-HHH--HHHcCCCCEEEE
Confidence            47888999999999988887654 44555543     334444321100     00011111 111  134567999999


Q ss_pred             ECCcccccchHhhhhcCEEEee-CCceEeCcccccCccccccccccccCHHHHHHHHHcCCCcCHHHH-------HHcCC
Q 004972          105 VEGLALGGGLELAMGCHARIAA-PKTQLGLPELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSEEG-------WKLGL  176 (721)
Q Consensus       105 v~G~a~GgG~~lalacD~ria~-~~a~~~~pe~~~Gl~P~~~~l~r~~G~~~a~~l~ltg~~~~a~eA-------~~~Gl  176 (721)
                      +.|+|.||+......||++|+. +.+++++.                 |+.....  .+|+.++.+|.       .+.|+
T Consensus       168 v~G~~~gG~a~~~~~~d~~vm~~~~a~i~~a-----------------GP~vV~~--~~ge~~~~eeLGga~~h~~~sG~  228 (258)
T d2a7sa1         168 IMGAAAGGHVYSPALTDFVIMVDQTSQMFIT-----------------GPDVIKT--VTGEEVTMEELGGAHTHMAKSGT  228 (258)
T ss_dssp             ECSCCBSGGGHHHHHSSEEEEEBTTBBCBSS-----------------CHHHHHH--HHCCCCCHHHHHBHHHHHHTSCC
T ss_pred             EecCcccHHHHHHHhccceEeecCceEEEcc-----------------ChhHHHH--hcCCccChhhccCHhHhhhhccc
Confidence            9999999999999999999986 45655543                 3333322  37888887753       46799


Q ss_pred             ccEEcCCchHHHHHHHHHHHHHhc
Q 004972          177 IDAVVTSEELLKVSRLWALDIAAR  200 (721)
Q Consensus       177 v~~vv~~~~l~~~a~~~a~~~a~~  200 (721)
                      +|.+++.+   +++.+.++++.+.
T Consensus       229 ~D~v~~de---~~a~~~~r~~Ls~  249 (258)
T d2a7sa1         229 AHYAASGE---QDAFDYVRELLSY  249 (258)
T ss_dssp             CSEEESSH---HHHHHHHHHHHHH
T ss_pred             cceEeCCH---HHHHHHHHHHHHh
Confidence            99999754   4445555555544

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.90  E-value=0.00042  Score=62.26  Aligned_cols=94  Identities=18%  Similarity=0.219  Sum_probs=64.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l~~  384 (721)
                      .||.|||+|..|..-+......|-.|+++|.+++++++....    +...++....+             ...+ +.+++
T Consensus        33 a~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~----~~~~~~~~~~~-------------~~~l~~~~~~   95 (168)
T d1pjca1          33 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETL----FGSRVELLYSN-------------SAEIETAVAE   95 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----HGGGSEEEECC-------------HHHHHHHHHT
T ss_pred             cEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHh----hcccceeehhh-------------hhhHHHhhcc
Confidence            689999999999999999999999999999999998765332    11111110000             0111 55789


Q ss_pred             CCEEEEccc--CC---hHHHHHHHHHHHhhCCCCeEEEecC
Q 004972          385 VDMVIEAVI--ES---VPLKQKIFSELEKACPPHCILATNT  420 (721)
Q Consensus       385 aDlVIeavp--e~---~~~k~~v~~~l~~~~~~~~ii~s~t  420 (721)
                      ||+||-++-  ..   .-+.    ++..+.++++++|++.+
T Consensus        96 aDivI~aalipG~~aP~lIt----~~mv~~Mk~GSVIVDva  132 (168)
T d1pjca1          96 ADLLIGAVLVPGRRAPILVP----ASLVEQMRTGSVIVDVA  132 (168)
T ss_dssp             CSEEEECCCCTTSSCCCCBC----HHHHTTSCTTCEEEETT
T ss_pred             CcEEEEeeecCCcccCeeec----HHHHhhcCCCcEEEEee
Confidence            999998883  11   1122    34556678999998644

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=96.86  E-value=0.0011  Score=61.65  Aligned_cols=100  Identities=14%  Similarity=0.118  Sum_probs=64.8

Q ss_pred             CceeEEEEcCCCCcHHHHHHHHHCC------CceEEEeCCH-HHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceec
Q 004972          304 GVRKVAVIGGGLMGSGIATAHILNN------IYVVLKEVNS-EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV  376 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~~la~~G------~~V~l~d~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~  376 (721)
                      .++||+|||.|.-|.+-|++|..+|      ..|++-=+.. ...+++.           +.|...        ......
T Consensus        43 g~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~-----------~dGf~v--------~~~~v~  103 (226)
T d1qmga2          43 GIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEAR-----------AAGFSE--------ENGTLG  103 (226)
T ss_dssp             TCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHH-----------HTTCCG--------GGTCEE
T ss_pred             CCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHH-----------HcCCcc--------CCCccc
Confidence            3579999999999999999999965      4455433222 2222221           222100        001112


Q ss_pred             cCccccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH
Q 004972          377 LDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL  425 (721)
Q Consensus       377 ~~~~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i  425 (721)
                      +-.++++.||+|...+|  -+.-.++++++.++++++..+.- +-++.+
T Consensus       104 ~v~EAv~~ADiVmiLlP--De~Q~~vy~~I~p~Lk~G~~L~F-aHGFnI  149 (226)
T d1qmga2         104 DMWETISGSDLVLLLIS--DSAQADNYEKVFSHMKPNSILGL-SHGFLL  149 (226)
T ss_dssp             EHHHHHHTCSEEEECSC--HHHHHHHHHHHHHHSCTTCEEEE-SSSHHH
T ss_pred             CHHHHHhhCCEEEEecc--hHHHHHHHHHHHHhcCCCceeee-cchhhh
Confidence            22367899999999999  55556788999999999987753 334444

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=96.82  E-value=0.00059  Score=60.80  Aligned_cols=87  Identities=14%  Similarity=0.094  Sum_probs=63.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  385 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  385 (721)
                      +++.|+|-|..|.++|+.+...|-.|+++++||-.+-++                        .++.....+-.++++.+
T Consensus        24 k~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA------------------------~mdGf~v~~~~~a~~~a   79 (163)
T d1v8ba1          24 KIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQA------------------------VMEGFNVVTLDEIVDKG   79 (163)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHH------------------------HTTTCEECCHHHHTTTC
T ss_pred             CEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHH------------------------HhcCCccCchhHccccC
Confidence            589999999999999999999999999999999653332                        12223333333778999


Q ss_pred             CEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecC
Q 004972          386 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  420 (721)
Q Consensus       386 DlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t  420 (721)
                      |+||.+....-.+..+    ....+++++|+....
T Consensus        80 Di~vTaTGn~~vI~~~----h~~~MKdgaIl~N~G  110 (163)
T d1v8ba1          80 DFFITCTGNVDVIKLE----HLLKMKNNAVVGNIG  110 (163)
T ss_dssp             SEEEECCSSSSSBCHH----HHTTCCTTCEEEECS
T ss_pred             cEEEEcCCCCccccHH----HHHHhhCCeEEEecc
Confidence            9999998754433333    334578999987544

>d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.70  E-value=0.016  Score=55.98  Aligned_cols=150  Identities=13%  Similarity=0.053  Sum_probs=92.8

Q ss_pred             EEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHH
Q 004972           15 VAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL   93 (721)
Q Consensus        15 v~~i~l~~p-~~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (721)
                      |+++..|.. .--+++....+.+..+.+.+.++. +-.|.|.-.     .|+.+.+-....     ..+...+ ...  .
T Consensus        90 v~v~a~Dftv~gGS~g~~~~~K~~r~~e~A~~~~-lPlI~l~ds-----gGarm~e~~~~~-----~~~~~~~-~~~--~  155 (258)
T d1xnya1          90 VAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTG-CPVVGINDS-----GGARIQEGVASL-----GAYGEIF-RRN--T  155 (258)
T ss_dssp             EEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEECC-----CSBCGGGTHHHH-----HHHHHHH-HHH--H
T ss_pred             EEEEechhhhhcCccchhhHHHHHHHHHHHHHcC-CceEEEecC-----CCcccCcccccc-----cchhHHH-HHH--H
Confidence            444444443 347888998999999988887654 456666543     334443321100     0011111 111  1


Q ss_pred             HhhCCCcEEEEECCcccccchHhhhhcCEEEeeC-CceEeCcccccCccccccccccccCHHHHHHHHHcCCCcCHHHH-
Q 004972           94 IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAP-KTQLGLPELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSEEG-  171 (721)
Q Consensus        94 l~~~~~p~Iaav~G~a~GgG~~lalacD~ria~~-~a~~~~pe~~~Gl~P~~~~l~r~~G~~~a~~l~ltg~~~~a~eA-  171 (721)
                      ...-..|+|+++.|+|+||+......||++|+.+ .+.+++.                 |+....  ..+|+.++.+|+ 
T Consensus       156 ~~s~~vP~I~vv~G~~~gG~a~~~~~~~~vim~~~~a~i~~a-----------------GP~vv~--~~~ge~i~~eelg  216 (258)
T d1xnya1         156 HASGVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFIT-----------------GPDVIK--TVTGEDVGFEELG  216 (258)
T ss_dssp             HTTTTSCEEEEECSEEEGGGGHHHHHSSEEEEETTTCEEESS-----------------CHHHHH--HHHCCCCCHHHHH
T ss_pred             HHcCCCCEEEEEcCCcChhHHHHHHhccchhhcccceEEEec-----------------CHHHHH--HHhcCccChHHhc
Confidence            2345699999999999999999999999988874 5666654                 222222  357888888875 


Q ss_pred             ------HHcCCccEEcCCchHHHHHHHHHHHHHhc
Q 004972          172 ------WKLGLIDAVVTSEELLKVSRLWALDIAAR  200 (721)
Q Consensus       172 ------~~~Glv~~vv~~~~l~~~a~~~a~~~a~~  200 (721)
                            ..-|++|.+++++   +++.+.++++.+.
T Consensus       217 ga~~h~~~sG~~d~v~~de---~ea~~~~r~~Ls~  248 (258)
T d1xnya1         217 GARTHNSTSGVAHHMAGDE---KDAVEYVKQLLSY  248 (258)
T ss_dssp             BHHHHHHTSSCCSEEESSH---HHHHHHHHHHHHH
T ss_pred             cHHHHHhcCCeeEEEeCCH---HHHHHHHHHHHHh
Confidence                  4569999999654   4455555554443

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.69  E-value=0.0029  Score=54.44  Aligned_cols=79  Identities=23%  Similarity=0.219  Sum_probs=56.0

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCCceEE-EeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNIYVVL-KEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  383 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l-~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  383 (721)
                      +||+|+|+ |.||..++..+...|++++. +|.+                                        ..+.+.
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~----------------------------------------~~~~~~   40 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVN----------------------------------------GVEELD   40 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETT----------------------------------------EEEECS
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCC----------------------------------------cHHHhc
Confidence            48999996 99999999999999998763 2321                                        124467


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHh
Q 004972          384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG  429 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~  429 (721)
                      ++|+||+-..  ++...+.++...+   .+..+++.|+++.-+++.
T Consensus        41 ~~DVvIDFS~--p~~~~~~l~~~~~---~~~p~ViGTTG~~~~~~~   81 (128)
T d1vm6a3          41 SPDVVIDFSS--PEALPKTVDLCKK---YRAGLVLGTTALKEEHLQ   81 (128)
T ss_dssp             CCSEEEECSC--GGGHHHHHHHHHH---HTCEEEECCCSCCHHHHH
T ss_pred             cCCEEEEecC--HHHHHHHHHHHHh---cCCCEEEEcCCCCHHHHH
Confidence            8999999776  5555555554433   355677888888765444

>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=96.64  E-value=0.013  Score=57.52  Aligned_cols=163  Identities=15%  Similarity=0.088  Sum_probs=91.1

Q ss_pred             EeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhh
Q 004972           19 TLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIED   96 (721)
Q Consensus        19 ~l~~p~--~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   96 (721)
                      .-|++.  --++++...+.+..+++.+.+.. +-+|.|.-     |.|+.+.+-.....  ......+.+.+ + ..+..
T Consensus       109 ~a~D~t~~gGs~~~~~~~K~~r~~~lA~~~~-lP~I~l~d-----s~Ga~~~~~~e~~~--~~~~~g~~~~~-~-a~ls~  178 (287)
T d1pixa2         109 VASDNKKLAGAWVPGQAECLLRASDTAKTLH-VPLVYVLN-----CSGVKFDEQEKVYP--NRRGGGTPFFR-N-AELNQ  178 (287)
T ss_dssp             EEECTTTTTTEECTTHHHHHHHHHHHHHHHT-CCEEEEEC-----CCEECGGGHHHHSS--STTSTTHHHHH-H-HHHHH
T ss_pred             EEeccccccccchhhHHHHHHHHHHhhhhcC-CCEEEEec-----CCcccCCcchhhcc--chhhHHHHHHH-H-HHHhh
Confidence            334443  36778888888888887776543 34555543     33444432111100  01112222222 2 23566


Q ss_pred             CCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccc--cCccccccccccccCHHHHHHHH-HcCCCcC-----H
Q 004972           97 CKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT--LGVIPGTQRLPRLVGLSKAIEMM-LLSKSIT-----S  168 (721)
Q Consensus        97 ~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~--~Gl~P~~~~l~r~~G~~~a~~l~-ltg~~~~-----a  168 (721)
                      ..+|+|++|.|.|+|||...+++||++++.+++.+.+.-..  -+..+     ...+....+.++. .+|+.++     +
T Consensus       179 ~~VP~Isvv~G~~~gGgAy~~~~~~~i~~~~~a~i~~~Gp~vv~~~~~-----~~~~~~~~~~ei~~~~ge~~~~eeLGG  253 (287)
T d1pixa2         179 LGIPVIVGIYGTNPAGGGYHSISPTVIIAHEKANMAVGGAGIMGGMNP-----KGHVDLEYANEIADMVDRTGKTEPPGA  253 (287)
T ss_dssp             TTCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESCCCTTCCSCCS-----SSSCCHHHHHHHHHHHHTTCCCCCSSB
T ss_pred             cCCCeEEEecCCccccceeccccceeEEecCCeEEEEECHHHhcccch-----hhhhhhhhHHHHHhhhccccccccccc
Confidence            78999999999999999888888888888898888773221  11111     1111122222221 3344443     3


Q ss_pred             HH--HHHcCCccEEcCCchHHHHHHHHHHHHHh
Q 004972          169 EE--GWKLGLIDAVVTSEELLKVSRLWALDIAA  199 (721)
Q Consensus       169 ~e--A~~~Glv~~vv~~~~l~~~a~~~a~~~a~  199 (721)
                      .+  +..-|.+|.+++.+   +++.+.++++.+
T Consensus       254 a~~H~~~sG~~d~v~~~e---~~ai~~~r~~ls  283 (287)
T d1pixa2         254 VDIHYTETGFMREVYASE---EGVLEGIKKYVG  283 (287)
T ss_dssp             HHHHTTTSCCSCEEESSH---HHHHHHHHHHHH
T ss_pred             HHHhhhhcccceeecCCH---HHHHHHHHHHHh
Confidence            33  34569999999764   355556655554

>d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.62  E-value=0.026  Score=54.12  Aligned_cols=147  Identities=11%  Similarity=0.078  Sum_probs=89.8

Q ss_pred             EEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHh
Q 004972           18 ITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE   95 (721)
Q Consensus        18 i~l~~p~--~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~   95 (721)
                      |.-+++.  --+++....+.+..+++.+.+.. +-.|.+.-     |.|+.+.+-...     ...+...+ ... . ..
T Consensus        90 v~a~D~t~~gGs~g~~~~~K~~r~~e~A~~~~-~P~I~~~d-----sgG~r~~e~~~~-----l~~~~~~~-~~~-~-~~  155 (251)
T d1vrga1          90 VFSQDFTVMGGSLGEMHAKKIVKLLDLALKMG-IPVIGIND-----SGGARIQEGVDA-----LAGYGEIF-LRN-T-LA  155 (251)
T ss_dssp             EEEECTTTGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEE-----ECSBCGGGTHHH-----HHHHHHHH-HHH-H-HH
T ss_pred             EeeehhhhhhcccchHHHHHHHHHHHHHHHcC-CCEEEEEc-----CCCccccccccc-----cccchHHH-HHH-H-HH
Confidence            3334443  37788888888888888776553 33455543     234444331110     00011111 111 2 23


Q ss_pred             hCCCcEEEEECCcccccchHhhhhcCEEEeeCC-ceEeCcccccCccccccccccccCHHHHHHHHHcCCCcCHHHH---
Q 004972           96 DCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSITSEEG---  171 (721)
Q Consensus        96 ~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~-a~~~~pe~~~Gl~P~~~~l~r~~G~~~a~~l~ltg~~~~a~eA---  171 (721)
                      .-..|+|+++.|+|+||+......||++|+.++ +.+++.                 |+... + ..+|+.++.++.   
T Consensus       156 s~~iP~I~vv~G~~~gG~a~~~~~~d~~im~~~~a~i~~a-----------------Gp~vv-~-~~~ge~~~~eelGga  216 (251)
T d1vrga1         156 SGVVPQITVIAGPCAGGAVYSPALTDFIVMVDQTARMFIT-----------------GPNVI-K-AVTGEEISQEDLGGA  216 (251)
T ss_dssp             TTTSCEEEEEEEEEBGGGGHHHHHSSEEEEETTTCBCBSS-----------------CHHHH-H-HHHCCCCCHHHHHBH
T ss_pred             CCCCCEEEEEccCccccceehhhhCceEEEEccceeEEec-----------------Cchhh-h-hhcCCcCChHHccch
Confidence            457999999999999999999999999998744 444432                 22222 2 246888988775   


Q ss_pred             ----HHcCCccEEcCCchHHHHHHHHHHHHHhc
Q 004972          172 ----WKLGLIDAVVTSEELLKVSRLWALDIAAR  200 (721)
Q Consensus       172 ----~~~Glv~~vv~~~~l~~~a~~~a~~~a~~  200 (721)
                          .+-|++|.+++.+   +.+.+.++++.+.
T Consensus       217 ~~h~~~sG~~D~v~~de---~~a~~~ir~lLs~  246 (251)
T d1vrga1         217 MVHNQKSGNAHFLADND---EKAMSLVRTLLSY  246 (251)
T ss_dssp             HHHHHTSCCCSEEESSH---HHHHHHHHHHHTT
T ss_pred             hhhhhccccceEEECCH---HHHHHHHHHHHHh
Confidence                4579999999765   4455556665543

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.00087  Score=62.94  Aligned_cols=39  Identities=23%  Similarity=0.297  Sum_probs=35.7

Q ss_pred             CCceeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHH
Q 004972          303 RGVRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYL  341 (721)
Q Consensus       303 ~~~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~  341 (721)
                      |.|+||.|+|+ |.+|+.++..|.++|++|++++|+++++
T Consensus         1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~   40 (205)
T d1hdoa_           1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRL   40 (205)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhc
Confidence            46899999995 9999999999999999999999998764

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=96.59  E-value=0.0031  Score=51.27  Aligned_cols=37  Identities=27%  Similarity=0.369  Sum_probs=32.9

Q ss_pred             CCceeEEEEcCCCCc-HHHHHHHHHCCCceEEEeCCHH
Q 004972          303 RGVRKVAVIGGGLMG-SGIATAHILNNIYVVLKEVNSE  339 (721)
Q Consensus       303 ~~~~kI~VIG~G~mG-~~iA~~la~~G~~V~l~d~~~~  339 (721)
                      ..++||.|||.|-.| +++|..|...|++|+++|....
T Consensus         6 ~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~   43 (96)
T d1p3da1           6 RRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADG   43 (96)
T ss_dssp             TTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCS
T ss_pred             hhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCC
Confidence            357899999999999 7789999999999999998743

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=96.59  E-value=0.0057  Score=55.13  Aligned_cols=77  Identities=21%  Similarity=0.184  Sum_probs=49.6

Q ss_pred             eeEEEEcCCCCcHH-HHHHHHHC-CCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccc-c
Q 004972          306 RKVAVIGGGLMGSG-IATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE-F  382 (721)
Q Consensus       306 ~kI~VIG~G~mG~~-iA~~la~~-G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-l  382 (721)
                      .||||||+|.||.. ....+.+. +.+++++|.+++.++...+.                      .+.....++++. +
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~----------------------~~~~~~~~~~~~ll   59 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATR----------------------YRVSATCTDYRDVL   59 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHH----------------------TTCCCCCSSTTGGG
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHh----------------------cccccccccHHHhc
Confidence            48999999999976 45566554 56889999999887764321                      111122345433 3


Q ss_pred             -CCCCEEEEcccCChHHHHHHHHHH
Q 004972          383 -KDVDMVIEAVIESVPLKQKIFSEL  406 (721)
Q Consensus       383 -~~aDlVIeavpe~~~~k~~v~~~l  406 (721)
                       .+.|+|+.|+|.+..  .++..+.
T Consensus        60 ~~~iD~V~I~tp~~~H--~~~~~~a   82 (167)
T d1xeaa1          60 QYGVDAVMIHAATDVH--STLAAFF   82 (167)
T ss_dssp             GGCCSEEEECSCGGGH--HHHHHHH
T ss_pred             ccccceeccccccccc--ccccccc
Confidence             468999999994433  3444443

>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD
species: Escherichia coli [TaxId: 562]

Probab=96.54  E-value=0.014  Score=56.61  Aligned_cols=142  Identities=19%  Similarity=0.211  Sum_probs=87.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEE
Q 004972           25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA  104 (721)
Q Consensus        25 ~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaa  104 (721)
                      --+++....+.+..+.+.+.++. +-.|.++-     |.|+.+.+-...     ...+.... ..+ ..+.....|+|++
T Consensus       109 gGS~g~~~~~Ki~~a~e~A~~~~-lPlI~~~~-----sgG~r~~e~~~s-----l~~~~~~~-~~~-~~~~~~~vP~I~v  175 (263)
T d2f9yb1         109 GGSMGSVVGARFVRAVEQALEDN-CPLICFSA-----SGGARMQEALMS-----LMQMAKTS-AAL-AKMQERGLPYISV  175 (263)
T ss_dssp             TTCBCTHHHHHHHHHHHHHHHHT-CCEEEEEE-----ESSBCGGGTHHH-----HHHHHHHH-HHH-HHHHHTTCCEEEE
T ss_pred             ccccccchhhHHhHHHHHHHHcC-CCeEEEec-----CCCcccccccch-----hhcchhHH-HHH-HHHHhCCCceEEE
Confidence            47888888888999888877553 34565653     334444331100     00111111 112 2355678999999


Q ss_pred             ECCcccccch-HhhhhcCEEEeeCCceEeCcccccCccccccccccccCHHHHHHHHHcCCCcC-----HHHHHHcCCcc
Q 004972          105 VEGLALGGGL-ELAMGCHARIAAPKTQLGLPELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSIT-----SEEGWKLGLID  178 (721)
Q Consensus       105 v~G~a~GgG~-~lalacD~ria~~~a~~~~pe~~~Gl~P~~~~l~r~~G~~~a~~l~ltg~~~~-----a~eA~~~Glv~  178 (721)
                      +.|.|.||+. .+++++|++++.+.+.+++.                 |+....  ..+|+.++     ++-..+.|+||
T Consensus       176 ~~g~~~GG~aa~~~~~~d~i~~~~~s~i~~a-----------------GP~vve--~~~ge~~~e~~g~a~~~~~~G~iD  236 (263)
T d2f9yb1         176 LTDPTMGGVSASFAMLGDLNIAEPKALIGFA-----------------GPRVIE--QTVREKLPPGFQRSEFLIEKGAID  236 (263)
T ss_dssp             EEEEEEHHHHTTGGGCCSEEEECTTCBEESS-----------------CHHHHH--HHHTSCCCTTTTBHHHHGGGTCCS
T ss_pred             ecCCcchHHHhhhhhcCceEeeecceeeecc-----------------CHHHHh--hhcCCcCChhhccHHHHHhCCCCC
Confidence            9999999976 57888888888888888764                 333222  13455543     44445789999


Q ss_pred             EEcCCchHHHHHHHHHHHHH
Q 004972          179 AVVTSEELLKVSRLWALDIA  198 (721)
Q Consensus       179 ~vv~~~~l~~~a~~~a~~~a  198 (721)
                      .++++++.-++...+.+-|.
T Consensus       237 ~vv~~ee~~~~l~~~l~~L~  256 (263)
T d2f9yb1         237 MIVRRPEMRLKLASILAKLM  256 (263)
T ss_dssp             EECCHHHHHHHHHHHHHHHT
T ss_pred             EEECCHHHHHHHHHHHHHHh
Confidence            99987765544444443443

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.42  E-value=0.0024  Score=56.28  Aligned_cols=99  Identities=15%  Similarity=0.231  Sum_probs=59.8

Q ss_pred             ceeEEEEcC-CCCcHHHHHHHHHC-CC---ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc
Q 004972          305 VRKVAVIGG-GLMGSGIATAHILN-NI---YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY  379 (721)
Q Consensus       305 ~~kI~VIG~-G~mG~~iA~~la~~-G~---~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  379 (721)
                      |+||||||+ |..|.-+.+.|..+ .+   +++.+..+...-..            +..+.        .........+.
T Consensus         1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~------------~~~~~--------~~~~~~~~~~~   60 (146)
T d1t4ba1           1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAA------------PSFGG--------TTGTLQDAFDL   60 (146)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBC------------CGGGT--------CCCBCEETTCH
T ss_pred             CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccccccc------------ccccC--------Cceeeecccch
Confidence            579999998 99999999876654 33   56666654322000            00000        00011112233


Q ss_pred             cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH
Q 004972          380 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN  426 (721)
Q Consensus       380 ~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~  426 (721)
                      +.++++|+||.|+|  .+..+++..++... ..++++++++|.....
T Consensus        61 ~~~~~~DivF~a~~--~~~s~~~~~~~~~~-g~~~~VID~Ss~fR~~  104 (146)
T d1t4ba1          61 EALKALDIIVTCQG--GDYTNEIYPKLRES-GWQGYWIDAASSLRMK  104 (146)
T ss_dssp             HHHHTCSEEEECSC--HHHHHHHHHHHHHT-TCCCEEEECSSTTTTC
T ss_pred             hhhhcCcEEEEecC--chHHHHhhHHHHhc-CCCeecccCCcccccC
Confidence            45789999999998  66556666655442 4456888999976553

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.42  E-value=0.001  Score=57.07  Aligned_cols=36  Identities=28%  Similarity=0.335  Sum_probs=32.7

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHH
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY  340 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~  340 (721)
                      .++|.|||+|.+|.-+|..|++.|.+|+++++.+.-
T Consensus        30 ~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~   65 (123)
T d1nhpa2          30 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP   65 (123)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CCEEEEECChHHHHHHHHHhhccceEEEEEEecCcc
Confidence            368999999999999999999999999999987643

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=96.40  E-value=0.0023  Score=58.02  Aligned_cols=39  Identities=21%  Similarity=0.093  Sum_probs=35.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKG  344 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~  344 (721)
                      ++|.|||+|-++.+++..|.+.|. +|++++|++++.+..
T Consensus        18 ~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L   57 (167)
T d1npya1          18 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYL   57 (167)
T ss_dssp             SCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHH
Confidence            689999999999999999999997 899999999987664

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=96.40  E-value=0.0025  Score=57.82  Aligned_cols=40  Identities=13%  Similarity=0.121  Sum_probs=36.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  345 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  345 (721)
                      ++|.|+|+|-.+.+++..|.+.|.+|++++|+.++++...
T Consensus        19 k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~   58 (170)
T d1nyta1          19 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELA   58 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHH
Confidence            6899999999999999999999999999999999877654

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=96.35  E-value=0.0029  Score=57.53  Aligned_cols=70  Identities=17%  Similarity=0.246  Sum_probs=51.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCcee-ccCccccCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDYSEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~l~~  384 (721)
                      ++|.|+|+|-++.+++..|...+.+|++++|+.++++...+.+.       ..+            .+.. ..+...+.+
T Consensus        19 k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~-------~~~------------~~~~~~~~~~~~~~   79 (171)
T d1p77a1          19 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQ-------PYG------------NIQAVSMDSIPLQT   79 (171)
T ss_dssp             CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHG-------GGS------------CEEEEEGGGCCCSC
T ss_pred             CEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHh-------hcc------------ccchhhhccccccc
Confidence            68999999999999999999988899999999998777543321       111            1221 122234688


Q ss_pred             CCEEEEcccC
Q 004972          385 VDMVIEAVIE  394 (721)
Q Consensus       385 aDlVIeavpe  394 (721)
                      +|+||-|+|-
T Consensus        80 ~diiIN~tp~   89 (171)
T d1p77a1          80 YDLVINATSA   89 (171)
T ss_dssp             CSEEEECCCC
T ss_pred             cceeeecccc
Confidence            9999999983

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.29  E-value=0.0015  Score=55.91  Aligned_cols=36  Identities=22%  Similarity=0.488  Sum_probs=33.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYL  341 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~  341 (721)
                      ++|.|||+|.+|.-+|..|++.|.+|+++++++.-+
T Consensus        31 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l   66 (121)
T d1d7ya2          31 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLM   66 (121)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT
T ss_pred             CeEEEECcchhHHHHHHHhhcccceEEEEeeccccc
Confidence            589999999999999999999999999999987654

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.28  E-value=0.01  Score=54.33  Aligned_cols=72  Identities=14%  Similarity=0.131  Sum_probs=49.1

Q ss_pred             eEEEEcCCCCcHHHHHHHHHC-CCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccc-c-
Q 004972          307 KVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE-F-  382 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-l-  382 (721)
                      ||||||+|.||...+..+... +.+|+ ++|+++++++...+.          .+ +.        ......++++. + 
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~----------~~-~~--------~~~~~~~~~~~ll~   63 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATA----------NN-YP--------ESTKIHGSYESLLE   63 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHH----------TT-CC--------TTCEEESSHHHHHH
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhc----------cc-cc--------cceeecCcHHHhhh
Confidence            799999999999999888775 56776 789999876653211          01 00        12334556533 2 


Q ss_pred             -CCCCEEEEcccCChH
Q 004972          383 -KDVDMVIEAVIESVP  397 (721)
Q Consensus       383 -~~aDlVIeavpe~~~  397 (721)
                       .+.|+|+.|.|.+..
T Consensus        64 ~~~iD~v~I~tp~~~h   79 (184)
T d1ydwa1          64 DPEIDALYVPLPTSLH   79 (184)
T ss_dssp             CTTCCEEEECCCGGGH
T ss_pred             ccccceeeecccchhh
Confidence             568999999985444

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.16  E-value=0.0077  Score=50.41  Aligned_cols=78  Identities=17%  Similarity=0.164  Sum_probs=54.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceecc---Ccccc
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL---DYSEF  382 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~---~~~~l  382 (721)
                      ++|.|||+|..|..-|..|.+.|.+|++++.....-..          .+.+.+            +++...   +.+.+
T Consensus        13 k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~----------~~~~~~------------~i~~~~~~~~~~dl   70 (113)
T d1pjqa1          13 RDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFT----------VWANEG------------MLTLVEGPFDETLL   70 (113)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHH----------HHHTTT------------SCEEEESSCCGGGG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHH----------HHHhcC------------CceeeccCCCHHHh
Confidence            68999999999999999999999999999986643211          112222            222222   22568


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHH
Q 004972          383 KDVDMVIEAVIESVPLKQKIFSEL  406 (721)
Q Consensus       383 ~~aDlVIeavpe~~~~k~~v~~~l  406 (721)
                      .++++|+.|.. +..+...+.+..
T Consensus        71 ~~~~lv~~at~-d~~~n~~i~~~a   93 (113)
T d1pjqa1          71 DSCWLAIAATD-DDTVNQRVSDAA   93 (113)
T ss_dssp             TTCSEEEECCS-CHHHHHHHHHHH
T ss_pred             CCCcEEeecCC-CHHHHHHHHHHH
Confidence            89999998754 666666665543

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.15  E-value=0.0034  Score=57.32  Aligned_cols=74  Identities=16%  Similarity=0.163  Sum_probs=51.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  385 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  385 (721)
                      ++|.|||+|-++.+++..|.+.| +|++++|+.++++...+.+...+.....             ..+....-.....++
T Consensus        19 k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~   84 (177)
T d1nvta1          19 KNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFG-------------EEVKFSGLDVDLDGV   84 (177)
T ss_dssp             CEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHH-------------HHEEEECTTCCCTTC
T ss_pred             CEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhh-------------hhhhhhhhhhccchh
Confidence            58999999999999999998777 9999999999988876554432211100             012222212446788


Q ss_pred             CEEEEccc
Q 004972          386 DMVIEAVI  393 (721)
Q Consensus       386 DlVIeavp  393 (721)
                      |+||.|+|
T Consensus        85 dliIn~tp   92 (177)
T d1nvta1          85 DIIINATP   92 (177)
T ss_dssp             CEEEECSC
T ss_pred             hhhccCCc
Confidence            99998887

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.13  E-value=0.029  Score=50.97  Aligned_cols=40  Identities=15%  Similarity=0.057  Sum_probs=35.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI  345 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~  345 (721)
                      .+|.|+|+|.+|...++.+...|. +|++.|+++++++.++
T Consensus        30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~   70 (182)
T d1vj0a2          30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE   70 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH
T ss_pred             CEEEEECCCccchhheecccccccccccccccccccccccc
Confidence            479999999999999999999997 7999999999987653

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.03  E-value=0.019  Score=51.53  Aligned_cols=40  Identities=25%  Similarity=0.205  Sum_probs=36.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  345 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  345 (721)
                      .+|.|+|+|.+|...++.+...|.+|+++|+++++++.++
T Consensus        28 ~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~   67 (170)
T d1e3ja2          28 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAK   67 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHH
Confidence            4799999999999999999999999999999999987764

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=96.02  E-value=0.014  Score=52.72  Aligned_cols=135  Identities=15%  Similarity=0.190  Sum_probs=78.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHC-CCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc
Q 004972          306 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  382 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  382 (721)
                      .||+|||+|.||...+..+... +++++ ++|++++....                           .......+. +..
T Consensus         4 irvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~~---------------------------~~~~~~~~~~~~~   56 (170)
T d1f06a1           4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTK---------------------------TPVFDVADVDKHA   56 (170)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSS---------------------------SCEEEGGGGGGTT
T ss_pred             ceEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccccc---------------------------cccccchhhhhhc
Confidence            4799999999999999988764 56655 77777543111                           123334444 456


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHhcccCCCCcEEEecCCCCCCCCCeeEEecCCCCC
Q 004972          383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS  462 (721)
Q Consensus       383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~~~~~~~~r~ig~h~~~p~~~~~lvEiv~~~~t~  462 (721)
                      .+.|+|++|.|.....  ++   ..+.+..+.-+++...                         +.           ..+
T Consensus        57 ~~~D~Vvi~tp~~~h~--~~---a~~aL~aG~~vv~~~~-------------------------~~-----------~~~   95 (170)
T d1f06a1          57 DDVDVLFLCMGSATDI--PE---QAPKFAQFACTVDTYD-------------------------NH-----------RDI   95 (170)
T ss_dssp             TTCSEEEECSCTTTHH--HH---HHHHHTTTSEEECCCC-------------------------CG-----------GGH
T ss_pred             cccceEEEeCCCcccH--HH---HHHHHHCCCcEEEecC-------------------------cc-----------ccC
Confidence            7899999999855432  22   2223334432222110                         00           124


Q ss_pred             HHHHHHHHHHHHHcCCeeEE-EcCCCchhhhhhhhHHHHHHHHHHHcC
Q 004972          463 AQVILDLMTVGKIIKKVPVV-VGNCTGFAVNRAFFPYSQSARLLVSLG  509 (721)
Q Consensus       463 ~e~~~~~~~l~~~lG~~~v~-v~d~~gfi~nRl~~~~~~Ea~~l~~~G  509 (721)
                      ++..+.+..+.+.-|+..++ .+-.|||...|. .+....+-++.+.|
T Consensus        96 ~~~~~~l~~~A~~~~~~~~i~~g~~~~~~~~~~-~~~~~~~~~~~~~G  142 (170)
T d1f06a1          96 PRHRQVMNEAATAAGNVALVSTGRNPDFTASSQ-IAFGRAAHRMKQQG  142 (170)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCSCHHHHHHHHH-HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcCceEEEeceeccchhHHHH-HHHHHHHHHHHhcC
Confidence            56667777777776655443 134566665553 34455666777775

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.02  E-value=0.00068  Score=57.69  Aligned_cols=34  Identities=12%  Similarity=0.220  Sum_probs=31.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  339 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~  339 (721)
                      +||.|||+|.+|.-+|..|++.|.+|+++++.+.
T Consensus        23 ~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~   56 (117)
T d1onfa2          23 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNR   56 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSS
T ss_pred             CEEEEECCchHHHHHHHHHHhccccceeeehhcc
Confidence            6899999999999999999999999999998643

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=96.00  E-value=0.0084  Score=47.79  Aligned_cols=65  Identities=20%  Similarity=0.173  Sum_probs=46.2

Q ss_pred             eeEEEEcCCCCcH-HHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972          306 RKVAVIGGGLMGS-GIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~mG~-~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  384 (721)
                      +||-+||.|-+|- ++|..|.+.|++|...|+.+...-.          .+.+.| +          .+....+.+.+.+
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~----------~L~~~G-i----------~i~~gh~~~~i~~   60 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTA----------YLRKLG-I----------PIFVPHSADNWYD   60 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHH----------HHHHTT-C----------CEESSCCTTSCCC
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHH----------HHHHCC-C----------eEEeeecccccCC
Confidence            4799999999886 7899999999999999998643221          122333 1          2333344466789


Q ss_pred             CCEEEEc
Q 004972          385 VDMVIEA  391 (721)
Q Consensus       385 aDlVIea  391 (721)
                      +|+||.+
T Consensus        61 ~d~vV~S   67 (89)
T d1j6ua1          61 PDLVIKT   67 (89)
T ss_dssp             CSEEEEC
T ss_pred             CCEEEEe
Confidence            9999965

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=95.95  E-value=0.0049  Score=54.98  Aligned_cols=92  Identities=20%  Similarity=0.250  Sum_probs=53.3

Q ss_pred             eeEEEEcCCCCcHHH-HHHHHHC-CCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccC----
Q 004972          306 RKVAVIGGGLMGSGI-ATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD----  378 (721)
Q Consensus       306 ~kI~VIG~G~mG~~i-A~~la~~-G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~----  378 (721)
                      -||||||+|.+|..+ ...+... ..+++ +.+++++.......         .+.+             +....+    
T Consensus         5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a---------~~~~-------------i~~~~~~~d~   62 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARA---------QRMG-------------VTTTYAGVEG   62 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHH---------HHTT-------------CCEESSHHHH
T ss_pred             cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhh---------hhcC-------------Ccccccceee
Confidence            379999999999864 5555544 33555 55777653221100         0111             111111    


Q ss_pred             c---cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972          379 Y---SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  422 (721)
Q Consensus       379 ~---~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  422 (721)
                      +   ....+.|+|+.|+|......+...   ...++.++.++++++.
T Consensus        63 l~~~~~~~~iDiVf~ATpag~h~~~~~~---~~aa~~G~~VID~s~a  106 (157)
T d1nvmb1          63 LIKLPEFADIDFVFDATSASAHVQNEAL---LRQAKPGIRLIDLTPA  106 (157)
T ss_dssp             HHHSGGGGGEEEEEECSCHHHHHHHHHH---HHHHCTTCEEEECSTT
T ss_pred             eeecccccccCEEEEcCCchhHHHhHHH---HHHHHcCCEEEEcccc
Confidence            1   234679999999985444443332   2334778899999984

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=95.95  E-value=0.0016  Score=52.81  Aligned_cols=34  Identities=18%  Similarity=0.290  Sum_probs=31.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  339 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~  339 (721)
                      +||+|+|+|..|.++|..|.+.|.+|+++|.++.
T Consensus         6 K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence            5899999999999999999999999999998654

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=95.90  E-value=0.0025  Score=61.22  Aligned_cols=34  Identities=21%  Similarity=0.284  Sum_probs=31.6

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCH
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  338 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~  338 (721)
                      -+||.|||+|.+|.+.|..|+++|++|+++|++.
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            4689999999999999999999999999999863

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=95.89  E-value=0.024  Score=51.48  Aligned_cols=78  Identities=12%  Similarity=0.016  Sum_probs=49.1

Q ss_pred             eeEEEEcCCCCcHH-HHHHHHHCC--CceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccc
Q 004972          306 RKVAVIGGGLMGSG-IATAHILNN--IYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  381 (721)
Q Consensus       306 ~kI~VIG~G~mG~~-iA~~la~~G--~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  381 (721)
                      -||||||+|.||.. ....+.+.+  .+|+ ++|+++++++...+.                      .+.....++++.
T Consensus         4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~----------------------~~~~~~~~~~~e   61 (181)
T d1zh8a1           4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKM----------------------VGNPAVFDSYEE   61 (181)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHH----------------------HSSCEEESCHHH
T ss_pred             cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhcc----------------------ccccceeeeeec
Confidence            37999999999987 466666543  3555 889999886654221                      122334455533


Q ss_pred             -c--CCCCEEEEcccCChHHHHHHHHHHH
Q 004972          382 -F--KDVDMVIEAVIESVPLKQKIFSELE  407 (721)
Q Consensus       382 -l--~~aDlVIeavpe~~~~k~~v~~~l~  407 (721)
                       +  .+.|+|+.|+|.+..  .++...+.
T Consensus        62 ll~~~~id~v~I~tp~~~h--~~~~~~al   88 (181)
T d1zh8a1          62 LLESGLVDAVDLTLPVELN--LPFIEKAL   88 (181)
T ss_dssp             HHHSSCCSEEEECCCGGGH--HHHHHHHH
T ss_pred             cccccccceeecccccccc--cccccccc
Confidence             3  468999999984433  34444433

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.85  E-value=0.00088  Score=56.74  Aligned_cols=35  Identities=23%  Similarity=0.346  Sum_probs=32.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY  340 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~  340 (721)
                      +++.|||+|..|.-+|..|++.|++|+++++.+.-
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~i   56 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERI   56 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHhhcccceEEEeeeccc
Confidence            68999999999999999999999999999987543

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=95.84  E-value=0.013  Score=52.42  Aligned_cols=69  Identities=10%  Similarity=-0.044  Sum_probs=45.8

Q ss_pred             eeEEEEcCCCCcHH-HHHHHHHC-CCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-cc
Q 004972          306 RKVAVIGGGLMGSG-IATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE  381 (721)
Q Consensus       306 ~kI~VIG~G~mG~~-iA~~la~~-G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  381 (721)
                      .||||||+|.||.. ....+... +++++ ++|+++++++...+..                       .+...+++ +.
T Consensus         2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~-----------------------~~~~~~~~~~l   58 (164)
T d1tlta1           2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESW-----------------------RIPYADSLSSL   58 (164)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHH-----------------------TCCBCSSHHHH
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcc-----------------------cccccccchhh
Confidence            37999999999986 45555544 66654 8899988766543211                       12234444 33


Q ss_pred             cCCCCEEEEcccCChH
Q 004972          382 FKDVDMVIEAVIESVP  397 (721)
Q Consensus       382 l~~aDlVIeavpe~~~  397 (721)
                      +++.|+|+.|+|.+..
T Consensus        59 ~~~~D~V~I~tp~~~h   74 (164)
T d1tlta1          59 AASCDAVFVHSSTASH   74 (164)
T ss_dssp             HTTCSEEEECSCTTHH
T ss_pred             hhhcccccccccchhc
Confidence            5789999999995543

>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA
species: Escherichia coli [TaxId: 562]

Probab=95.81  E-value=0.03  Score=55.22  Aligned_cols=135  Identities=14%  Similarity=0.020  Sum_probs=88.2

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEE
Q 004972           26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (721)
Q Consensus        26 Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav  105 (721)
                      -+++++-+..-.+.++.++.-. +-+|-|-=+++ |-.|.+-++.          -......+.+ ..+.++.+|+|+.|
T Consensus       130 G~~~p~~~rKa~r~~~~a~~~~-~Pii~~vDtpG-~~~g~~~E~~----------g~~~~~a~~~-~~~~~~~vP~i~vv  196 (316)
T d2f9ya1         130 GMPAPEGYRKALRLMQMAERFK-MPIITFIDTPG-AYPGVGAEER----------GQSEAIARNL-REMSRLGVPVVCTV  196 (316)
T ss_dssp             GCCCHHHHHHHHHHHHHHHHTT-CCEEEEEEESC-SCCSHHHHHT----------THHHHHHHHH-HHHHTCSSCEEEEE
T ss_pred             ccccHHHHHHHHHHHHHHHHcC-cceEEEEecCc-ccCCcccccc----------cHHHHHHHHH-HHHHhCCCceEEEE
Confidence            4578888888888888877543 33444432222 3333332221          1122333455 55889999999999


Q ss_pred             CCcccccchHhhhhcCEEEeeCCceEeCcccccCcccc---ccccccccCHHHHHHHHHcCCCcCHHHHHHcCCccEEcC
Q 004972          106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---TQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT  182 (721)
Q Consensus       106 ~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~---~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~  182 (721)
                      -|-+.|||......+|.+.|.++|.|+.-      .|.   +..+...--...|.+    ...+++++.+++|+||+|+|
T Consensus       197 ~g~g~~gga~a~~~~d~v~m~~~a~~svi------spEg~AsILwkd~~~a~eaAe----alklta~dL~~lgiIDeII~  266 (316)
T d2f9ya1         197 IGEGGSGGALAIGVGDKVNMLQYSTYSVI------SPEGCASILWKSADKAPLAAE----AMGIIRPRLKELKLIDSIIP  266 (316)
T ss_dssp             EEEEEHHHHHTTCCCSEEEECTTCEEESS------CHHHHHHHHSSCSTTHHHHHH----HHTCSHHHHHTTTSCSCCCC
T ss_pred             EhhhhchhhhhhhhhhHHHHHhhhHHhhc------cchhhhhHhhccchhhcchHH----HHhhhhHHHHHcCchhhccc
Confidence            99999999988889999999999999832      332   222222222222322    23478999999999999996


Q ss_pred             C
Q 004972          183 S  183 (721)
Q Consensus       183 ~  183 (721)
                      +
T Consensus       267 E  267 (316)
T d2f9ya1         267 E  267 (316)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=95.79  E-value=0.019  Score=53.20  Aligned_cols=39  Identities=18%  Similarity=0.273  Sum_probs=36.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  344 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  344 (721)
                      ++|+|.|.|.+|..+|..|.+.|..|+++|.+++.+...
T Consensus        28 k~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~   66 (201)
T d1c1da1          28 LTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHA   66 (201)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHH
Confidence            589999999999999999999999999999999887654

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=95.79  E-value=0.0022  Score=63.99  Aligned_cols=33  Identities=21%  Similarity=0.310  Sum_probs=31.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  338 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~  338 (721)
                      +||+|||+|.-|.+.|..|+++|++|+++|.++
T Consensus        31 kkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1          31 KHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            689999999999999999999999999999765

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=95.69  E-value=0.026  Score=53.20  Aligned_cols=73  Identities=15%  Similarity=0.115  Sum_probs=46.4

Q ss_pred             eEEEEcCCCCcHH-HHHHHHHC-CCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccc-c
Q 004972          307 KVAVIGGGLMGSG-IATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE-F  382 (721)
Q Consensus       307 kI~VIG~G~mG~~-iA~~la~~-G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-l  382 (721)
                      ||||||+|.||.. +...+... +.+|+ ++|+++++++...+.+          + +..       ..+...+|++. +
T Consensus        35 riaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~----------~-i~~-------~~~~~~~d~~ell   96 (221)
T d1h6da1          35 GYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEY----------G-VDP-------RKIYDYSNFDKIA   96 (221)
T ss_dssp             EEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHT----------T-CCG-------GGEECSSSGGGGG
T ss_pred             EEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhh----------c-ccc-------ccccccCchhhhc
Confidence            7999999999975 44555443 66766 8999999877643211          1 110       12333455533 3


Q ss_pred             --CCCCEEEEcccCChH
Q 004972          383 --KDVDMVIEAVIESVP  397 (721)
Q Consensus       383 --~~aDlVIeavpe~~~  397 (721)
                        .+.|+|++|+|....
T Consensus        97 ~~~~iD~V~I~tp~~~H  113 (221)
T d1h6da1          97 KDPKIDAVYIILPNSLH  113 (221)
T ss_dssp             GCTTCCEEEECSCGGGH
T ss_pred             ccccceeeeeccchhhh
Confidence              468999999985443

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=95.52  E-value=0.0045  Score=56.15  Aligned_cols=40  Identities=18%  Similarity=0.113  Sum_probs=36.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  345 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  345 (721)
                      -||.|||+|..|..-+......|-.|+++|++++++++..
T Consensus        30 a~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~   69 (183)
T d1l7da1          30 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVE   69 (183)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHH
T ss_pred             cEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHH
Confidence            5899999999999999999999999999999999877753

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.51  E-value=0.054  Score=48.47  Aligned_cols=40  Identities=25%  Similarity=0.248  Sum_probs=36.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI  345 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~  345 (721)
                      .+|.|+|+|.+|...++.+...|. .|+++|+++++++.++
T Consensus        28 d~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~   68 (171)
T d1pl8a2          28 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK   68 (171)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred             CEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHH
Confidence            479999999999999999999998 7999999999988763

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=95.48  E-value=0.006  Score=55.91  Aligned_cols=41  Identities=15%  Similarity=0.340  Sum_probs=36.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK  346 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~  346 (721)
                      ++|.|||+|-+|.+++..|...|. .+++++|+++.++++..
T Consensus        19 k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~   60 (182)
T d1vi2a1          19 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALA   60 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHH
Confidence            689999999999999999999987 79999999888777543

>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=95.47  E-value=0.041  Score=53.05  Aligned_cols=166  Identities=13%  Similarity=0.088  Sum_probs=100.1

Q ss_pred             EEeCCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHh
Q 004972           18 ITLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE   95 (721)
Q Consensus        18 i~l~~p~~--Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~   95 (721)
                      +.-|+|..  .+++.+-.+...+.++.++.. ++-.|.|.=. ..|..|.+-+.          ....+...+++ .++.
T Consensus        71 vian~~~~~~G~~~~~~a~Kaa~fi~lc~~~-~iPli~l~Dt-pGf~~G~~~E~----------~g~~~~ga~~~-~a~a  137 (264)
T d1vrga2          71 IVANQPSVLAGVLDIDSSDKAARFIRFLDAF-NIPILTFVDT-PGYLPGVAQEH----------GGIIRHGAKLL-YAYS  137 (264)
T ss_dssp             EEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHHH----------TTHHHHHHHHH-HHHH
T ss_pred             EEeccccccccchhhhhHHHHHHHHHHHHHh-CCceEEEeec-ccccccHHHHH----------HhHHHHHHHHH-HHHh
Confidence            44466654  679999999999988888754 4555655432 23555554332          12334555666 7799


Q ss_pred             hCCCcEEEEECCcccccchHhh----hhcCEEEeeCCceEeCc--ccccCcccccccccccc-CHHHHHHH--HHcCCCc
Q 004972           96 DCKKPIVAAVEGLALGGGLELA----MGCHARIAAPKTQLGLP--ELTLGVIPGTQRLPRLV-GLSKAIEM--MLLSKSI  166 (721)
Q Consensus        96 ~~~~p~Iaav~G~a~GgG~~la----lacD~ria~~~a~~~~p--e~~~Gl~P~~~~l~r~~-G~~~a~~l--~ltg~~~  166 (721)
                      ++.+|.|+.|-|.++|+|..-.    +.+|++++.+++.++.-  |...+++-.. .+...- ......++  .+.-+.-
T Consensus       138 ~~~vP~i~viir~~yG~g~~am~~~~~~~d~~~awP~a~~~vm~pe~aa~v~~~~-~l~~~~~~~~~~~~~~~~~~e~~~  216 (264)
T d1vrga2         138 EATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIAVMGPEGAANIIFKR-EIEASSNPEETRRKLIEEYKQQFA  216 (264)
T ss_dssp             HCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEESSCHHHHHHHHTHH-HHHHSSCHHHHHHHHHHHHHHHTS
T ss_pred             cCCCCEEEEEeCCcccHHhhhccCCccCCCeeeeccceeEEecCHHHhhhhhhhh-hhhhhhCcHHHHHHHHHHHHHHhc
Confidence            9999999999999999876222    25899998888888763  2222222110 000000 00000000  0111223


Q ss_pred             CHHHHHHcCCccEEcCCchHHHHHHHHHHHH
Q 004972          167 TSEEGWKLGLIDAVVTSEELLKVSRLWALDI  197 (721)
Q Consensus       167 ~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~  197 (721)
                      ++-.+.+.|.+|.|+++.+.........+.+
T Consensus       217 ~~~~aa~~g~iD~VIdP~dTR~~L~~~Le~l  247 (264)
T d1vrga2         217 NPYIAASRGYVDMVIDPRETRKYIMRALEVC  247 (264)
T ss_dssp             SHHHHHHTTSSSEECCGGGHHHHHHHHHHHH
T ss_pred             CHHHHHHcCCCCeeECHHHHHHHHHHHHHHH
Confidence            6778889999999999988766655544443

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=95.46  E-value=0.0033  Score=60.67  Aligned_cols=35  Identities=23%  Similarity=0.281  Sum_probs=32.5

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHH
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  339 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~  339 (721)
                      .+||+|||+|.-|.+.|..|+++|++|+++|++++
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~   38 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   38 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            46999999999999999999999999999998654

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=95.44  E-value=0.013  Score=51.27  Aligned_cols=98  Identities=20%  Similarity=0.270  Sum_probs=58.8

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHC-CC---ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcc
Q 004972          306 RKVAVIGG-GLMGSGIATAHILN-NI---YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS  380 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~-G~---~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  380 (721)
                      +||||||+ |+.|.-+.+.|..+ .|   ++..+..+... .+           ....+.        ....+....+.+
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~-gk-----------~~~~~~--------~~~~~~~~~~~~   60 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIG-VP-----------APNFGK--------DAGMLHDAFDIE   60 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCS-SB-----------CCCSSS--------CCCBCEETTCHH
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEecccccc-cc-----------ccccCC--------cceeeecccchh
Confidence            48999997 99999999877654 34   45544443221 00           000000        000111122334


Q ss_pred             ccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH
Q 004972          381 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN  426 (721)
Q Consensus       381 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~  426 (721)
                      .++++|+|+.|+|  ....+++..++.+. ..+++++++++...+.
T Consensus        61 ~~~~~DvvF~alp--~~~s~~~~~~l~~~-g~~~~VIDlSsdfR~~  103 (147)
T d1mb4a1          61 SLKQLDAVITCQG--GSYTEKVYPALRQA-GWKGYWIDAASTLRMD  103 (147)
T ss_dssp             HHTTCSEEEECSC--HHHHHHHHHHHHHT-TCCSEEEESSSTTTTC
T ss_pred             hhccccEEEEecC--chHHHHHhHHHHHc-CCceEEEeCCcccccc
Confidence            5789999999999  66666776666543 3446888999987654

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.41  E-value=0.01  Score=54.74  Aligned_cols=44  Identities=18%  Similarity=0.150  Sum_probs=38.5

Q ss_pred             eeEEEEc-CCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHH
Q 004972          306 RKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIE  349 (721)
Q Consensus       306 ~kI~VIG-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~  349 (721)
                      ++|.|.| .|-+|..+|..|++.|.+|++.+|++++++...+.+.
T Consensus        24 K~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~   68 (191)
T d1luaa1          24 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVN   68 (191)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHH
Confidence            6788999 5999999999999999999999999999887655443

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.39  E-value=0.012  Score=58.94  Aligned_cols=91  Identities=15%  Similarity=0.054  Sum_probs=58.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHC-C-CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972          306 RKVAVIGGGLMGSGIATAHILN-N-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  383 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~-G-~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  383 (721)
                      ++++|||+|.++...+..+... . .+|.+|++++++.+...++...       .+            .....+..+++.
T Consensus       126 ~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~-------~~------------~~~~~~~~~a~~  186 (320)
T d1omoa_         126 SVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCED-------RG------------ISASVQPAEEAS  186 (320)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHH-------TT------------CCEEECCHHHHT
T ss_pred             cEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHh-------cC------------Cccccchhhhhc
Confidence            5799999999999999887652 3 3899999999988776443221       11            111123336678


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCC
Q 004972          384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  421 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts  421 (721)
                      +||+|+.|++....+..      .+.+++++.|....|
T Consensus       187 ~aDiV~taT~s~~P~~~------~~~l~~G~hv~~iGs  218 (320)
T d1omoa_         187 RCDVLVTTTPSRKPVVK------AEWVEEGTHINAIGA  218 (320)
T ss_dssp             SSSEEEECCCCSSCCBC------GGGCCTTCEEEECSC
T ss_pred             cccEEEEeccCcccccc------hhhcCCCCeEeecCC
Confidence            99999988874333211      134566666554443

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=95.28  E-value=0.0048  Score=56.35  Aligned_cols=36  Identities=28%  Similarity=0.350  Sum_probs=33.1

Q ss_pred             CceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHH
Q 004972          304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  339 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~  339 (721)
                      .-+||+|||+|.-|..-|..|++.||+|+++|.+++
T Consensus        42 ~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~   77 (179)
T d1ps9a3          42 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE   77 (179)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCcEEEEECccHHHHHHHHHHHhhccceEEEeccCc
Confidence            347899999999999999999999999999998764

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.26  E-value=0.0032  Score=53.20  Aligned_cols=35  Identities=31%  Similarity=0.407  Sum_probs=32.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY  340 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~  340 (721)
                      ++|.|||+|.+|.-+|..+++.|.+|+++++.+.-
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~i   57 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEI   57 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CeEEEECCCccceeeeeeecccccEEEEEEeccee
Confidence            68999999999999999999999999999987653

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.21  E-value=0.048  Score=47.84  Aligned_cols=96  Identities=7%  Similarity=0.010  Sum_probs=58.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceec-cCc-----c
Q 004972          307 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY-----S  380 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-----~  380 (721)
                      +|-|+|.|.+|..++..|...|++|+++|.+++.........       ...+.          ..+... ++.     .
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~-------~~~~~----------~vi~Gd~~d~~~L~~a   67 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQR-------LGDNA----------DVIPGDSNDSSVLKKA   67 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHH-------HCTTC----------EEEESCTTSHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHh-------hcCCc----------EEEEccCcchHHHHHh
Confidence            699999999999999999999999999999987644332211       11110          001110 111     3


Q ss_pred             ccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecC
Q 004972          381 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT  420 (721)
Q Consensus       381 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~t  420 (721)
                      .+.+||.||.+.+++..-.. +...+....+.-.+++-..
T Consensus        68 ~i~~a~~vi~~~~~d~~n~~-~~~~~r~~~~~~~iia~~~  106 (153)
T d1id1a_          68 GIDRCRAILALSDNDADNAF-VVLSAKDMSSDVKTVLAVS  106 (153)
T ss_dssp             TTTTCSEEEECSSCHHHHHH-HHHHHHHHTSSSCEEEECS
T ss_pred             ccccCCEEEEccccHHHHHH-HHHHHHHhCCCCceEEEEc
Confidence            46889999999886544322 2223333334434665433

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.19  E-value=0.0029  Score=54.02  Aligned_cols=35  Identities=20%  Similarity=0.429  Sum_probs=32.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY  340 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~  340 (721)
                      +++.|||+|.+|.-+|..|++.|.+|+++++++.-
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~   58 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQI   58 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CeEEEECCCchHHHHHHHHHhhCcceeEEEecccc
Confidence            68999999999999999999999999999987643

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.11  E-value=0.0036  Score=48.49  Aligned_cols=35  Identities=26%  Similarity=0.341  Sum_probs=32.4

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHH
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  339 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~  339 (721)
                      |++|+|||.|..|.-++....+-|++|.++|.+++
T Consensus         1 ~k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           1 MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             CEEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            57999999999999999999999999999998754

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.03  E-value=0.0055  Score=56.27  Aligned_cols=34  Identities=18%  Similarity=0.145  Sum_probs=31.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSE  339 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~  339 (721)
                      +||+|||+|..|...|..|++.|+ +|+++++++.
T Consensus         5 ~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           5 AKIALLGAGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            689999999999999999999998 5999998764

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=94.86  E-value=0.0057  Score=59.48  Aligned_cols=32  Identities=38%  Similarity=0.493  Sum_probs=30.2

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCceEEEeCCH
Q 004972          307 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  338 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~  338 (721)
                      .|.|||+|.+|.++|..|+++|++|+++|+++
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            39999999999999999999999999999864

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=94.83  E-value=0.0042  Score=52.45  Aligned_cols=34  Identities=24%  Similarity=0.248  Sum_probs=31.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  339 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~  339 (721)
                      +||.|||+|..|.-+|..|++.|.+|+++++.+.
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~   55 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDA   55 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecch
Confidence            5899999999999999999999999999999753

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=94.73  E-value=0.08  Score=50.76  Aligned_cols=42  Identities=21%  Similarity=0.280  Sum_probs=35.4

Q ss_pred             eeEEEE-cC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHH
Q 004972          306 RKVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT  347 (721)
Q Consensus       306 ~kI~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~  347 (721)
                      |||++| |+ +-+|.++|..|++.|+.|++.|++++.++...+.
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~   44 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASE   44 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            578766 66 5699999999999999999999999988776543

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.70  E-value=0.022  Score=47.29  Aligned_cols=36  Identities=17%  Similarity=0.291  Sum_probs=32.9

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHH
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY  340 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~  340 (721)
                      ..||+|||+|..|..+|....+-|++|+++|.+++.
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~   46 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA   46 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTC
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCC
Confidence            458999999999999999999999999999998763

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=94.62  E-value=0.0078  Score=60.25  Aligned_cols=35  Identities=17%  Similarity=0.307  Sum_probs=32.3

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHH
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  339 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~  339 (721)
                      .+||+|||+|.-|.+.|..|+++|++|++++.+..
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~   36 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH   36 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence            47999999999999999999999999999998753

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.57  E-value=0.022  Score=51.68  Aligned_cols=35  Identities=29%  Similarity=0.347  Sum_probs=27.6

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHC-CCceEEE-eCCHH
Q 004972          305 VRKVAVIGGGLMGSGIATAHILN-NIYVVLK-EVNSE  339 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~-G~~V~l~-d~~~~  339 (721)
                      |-||||.|.|.+|..+++.+... +++|+.+ |.++.
T Consensus         1 MIKVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~   37 (178)
T d1b7go1           1 MVNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPN   37 (178)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCS
T ss_pred             CeEEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCc
Confidence            45899999999999999999876 4677654 55544

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.55  E-value=0.068  Score=47.42  Aligned_cols=39  Identities=18%  Similarity=0.113  Sum_probs=35.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  344 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  344 (721)
                      ++|.|+|+|.+|...++.+...|.+|+..|+++++++.+
T Consensus        29 ~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a   67 (166)
T d1llua2          29 QWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELA   67 (166)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhh
Confidence            479999999999999999999999999999999987765

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.38  E-value=0.0063  Score=51.55  Aligned_cols=34  Identities=24%  Similarity=0.344  Sum_probs=31.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  339 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~  339 (721)
                      ++|.|||+|.+|.-+|..|++.|.+|+++.+++.
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~   56 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK   56 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CeEEEECCChHHHHHHHHHHHcCCceEEEEeecc
Confidence            6899999999999999999999999999998654

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.38  E-value=0.027  Score=48.17  Aligned_cols=81  Identities=14%  Similarity=0.151  Sum_probs=58.2

Q ss_pred             eeEEEEcC----CCCcHHHHHHHHHCC-CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcc
Q 004972          306 RKVAVIGG----GLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS  380 (721)
Q Consensus       306 ~kI~VIG~----G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  380 (721)
                      ++|+|||+    |.+|..+.+.|...| ++|+.++...+.+                             ..+....+++
T Consensus         9 ksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i-----------------------------~G~~~y~sl~   59 (129)
T d2csua1           9 KGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV-----------------------------QGVKAYKSVK   59 (129)
T ss_dssp             SEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE-----------------------------TTEECBSSTT
T ss_pred             CeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCcccc-----------------------------CCeEeecchh
Confidence            68999997    788888888887666 5888888764331                             1245556665


Q ss_pred             cc-CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEE
Q 004972          381 EF-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA  417 (721)
Q Consensus       381 ~l-~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~  417 (721)
                      ++ ...|+++.++|  .+...++++++.+.=-+..++.
T Consensus        60 dlp~~vDlvvi~vp--~~~~~~~~~~~~~~g~~~~vi~   95 (129)
T d2csua1          60 DIPDEIDLAIIVVP--KRFVKDTLIQCGEKGVKGVVII   95 (129)
T ss_dssp             SCSSCCSEEEECSC--HHHHHHHHHHHHHHTCCEEEEC
T ss_pred             hcCCCCceEEEecC--hHHhHHHHHHHHHcCCCEEEEe
Confidence            55 46899999999  8888888888776543434443

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=94.32  E-value=0.0079  Score=58.58  Aligned_cols=33  Identities=33%  Similarity=0.434  Sum_probs=30.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  338 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~  338 (721)
                      ++|+|||+|.-|.+.|..|+++|++|++++.++
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSA   33 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            479999999999999999999999999999864

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.30  E-value=0.0073  Score=51.58  Aligned_cols=34  Identities=12%  Similarity=0.133  Sum_probs=31.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  339 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~  339 (721)
                      ++|.|||+|.+|.-+|..|++.|.+|+++++++.
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~   56 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDK   56 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccc
Confidence            6899999999999999999999999999999753

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=94.29  E-value=0.0092  Score=58.19  Aligned_cols=33  Identities=30%  Similarity=0.463  Sum_probs=31.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  338 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~  338 (721)
                      |||+|||+|.-|.+-|..|+++|++|+++|.++
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            689999999999999999999999999999764

>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=94.25  E-value=0.13  Score=49.41  Aligned_cols=164  Identities=13%  Similarity=0.151  Sum_probs=98.5

Q ss_pred             eCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhC
Q 004972           20 LINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDC   97 (721)
Q Consensus        20 l~~p~--~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   97 (721)
                      -|+|.  ..+++.+-.+...+.++.++.. ++-.|.|.-. ..|-.|.+-+.          ....+...+++ .++.++
T Consensus        71 a~~~~~~~G~~~~~~a~Ka~~fi~lc~~~-~iPli~l~d~-pGf~~G~~~E~----------~g~~~~ga~~~-~a~a~~  137 (263)
T d1xnya2          71 ANQPMQFAGCLDITASEKAARFVRTCDAF-NVPVLTFVDV-PGFLPGVDQEH----------DGIIRRGAKLI-FAYAEA  137 (263)
T ss_dssp             EECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHHH----------TTHHHHHHHHH-HHHHHC
T ss_pred             ecccceecCCcchhhHHHHHHHHHHHHHh-CCceEEeecc-cccccchhHHH----------HhHHHHHHHHH-HHHHcc
Confidence            35653  3789999999999998888765 3555555433 23555554322          12234455666 778999


Q ss_pred             CCcEEEEECCcccccchHhhh----hcCEEEeeCCceEeCccc--ccCcccc-----ccccccccCHHHHHHHHHcCCCc
Q 004972           98 KKPIVAAVEGLALGGGLELAM----GCHARIAAPKTQLGLPEL--TLGVIPG-----TQRLPRLVGLSKAIEMMLLSKSI  166 (721)
Q Consensus        98 ~~p~Iaav~G~a~GgG~~lal----acD~ria~~~a~~~~pe~--~~Gl~P~-----~~~l~r~~G~~~a~~l~ltg~~~  166 (721)
                      ..|.|+.|-|.++|||.....    ..|+++|.+++.++.-..  ...++-.     ...-.+..-.....+..  -+..
T Consensus       138 ~vPkitvi~~~~~Gga~~~m~~~~~~~d~~~awP~a~~gvm~pe~aa~il~~~~~~~a~~~~~~~~~~~~~~~~--~~~~  215 (263)
T d1xnya2         138 TVPLITVITRKAFGGAYDVMGSKHLGADLNLAWPTAQIAVMGAQGAVNILHRRTIADAGDDAEATRARLIQEYE--DALL  215 (263)
T ss_dssp             CSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEESSCHHHHHHHHTHHHHHSCCTTCSSSHHHHHHHHH--HHHS
T ss_pred             CCCeEEEEecCccccceeccCCcccCCcEEEEcchhhhhccCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHH--HHhc
Confidence            999999999999998764422    468999998888876422  2211110     00000000011111111  1123


Q ss_pred             CHHHHHHcCCccEEcCCchHHHHHHHHHHHHH
Q 004972          167 TSEEGWKLGLIDAVVTSEELLKVSRLWALDIA  198 (721)
Q Consensus       167 ~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a  198 (721)
                      ++..+...|.+|.|+++.+.........+.+.
T Consensus       216 ~p~~aA~~g~iD~VIdP~dTR~~L~~~L~~l~  247 (263)
T d1xnya2         216 NPYTAAERGYVDAVIMPSDTRRHIVRGLRQLR  247 (263)
T ss_dssp             SSHHHHHHTSSSEECCGGGHHHHHHHHHHHHT
T ss_pred             CHHHHHHcccCCcccCHHHHHHHHHHHHHHHh
Confidence            56678888999999999887765555444443

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.24  E-value=0.0084  Score=58.84  Aligned_cols=34  Identities=26%  Similarity=0.238  Sum_probs=32.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHH
Q 004972          307 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY  340 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~  340 (721)
                      +|.|||+|.-|..+|..|++.|++|+++|++++.
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~   37 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPD   37 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            7999999999999999999999999999998753

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=94.24  E-value=0.018  Score=51.38  Aligned_cols=104  Identities=16%  Similarity=0.066  Sum_probs=60.9

Q ss_pred             ceeEEEEcC-CCCcHHHHHHHHHC-CCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-c
Q 004972          305 VRKVAVIGG-GLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S  380 (721)
Q Consensus       305 ~~kI~VIG~-G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  380 (721)
                      ..||+|+|+ |.||+.++..+.+. +++++ .+|+.....-            ....+.+..    .....+..+++. +
T Consensus         4 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~------------g~d~~~~~~----~~~~~~~~~~~~~~   67 (162)
T d1diha1           4 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLL------------GSDAGELAG----AGKTGVTVQSSLDA   67 (162)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTC------------SCCTTCSSS----SSCCSCCEESCSTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhc------------cchhhhhhc----cccCCceeeccHHH
Confidence            358999996 99999999988775 56654 5555332100            000011000    000123445555 4


Q ss_pred             ccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHh
Q 004972          381 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG  429 (721)
Q Consensus       381 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~  429 (721)
                      ....+|+||+-..  ++...+.++.   ....+..+++.|+++.-.++.
T Consensus        68 ~~~~~DViIDFs~--p~~~~~~~~~---a~~~~~~~ViGTTG~~~~~~~  111 (162)
T d1diha1          68 VKDDFDVFIDFTR--PEGTLNHLAF---CRQHGKGMVIGTTGFDEAGKQ  111 (162)
T ss_dssp             TTTSCSEEEECSC--HHHHHHHHHH---HHHTTCEEEECCCCCCHHHHH
T ss_pred             HhcccceEEEecc--HHHHHHHHHH---HHhccceeEEecCCCcHHHHH
Confidence            5688999999876  5554455443   334566777888888765443

>d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.15  E-value=0.059  Score=53.21  Aligned_cols=82  Identities=13%  Similarity=0.103  Sum_probs=57.9

Q ss_pred             hCCCcEEEEECCcccccchHhhhhcCEEEeeCCceEeCcccccCccccccccccccCHHHHHHHHHcCCCc--CHHH---
Q 004972           96 DCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGTQRLPRLVGLSKAIEMMLLSKSI--TSEE---  170 (721)
Q Consensus        96 ~~~~p~Iaav~G~a~GgG~~lalacD~ria~~~a~~~~pe~~~Gl~P~~~~l~r~~G~~~a~~l~ltg~~~--~a~e---  170 (721)
                      .-..|+|++|.|.|+|+|..++-.||++|+.+++.+.+.                 |+ .+.+. .+|+.+  +.+|   
T Consensus       238 ~~~iptis~v~G~~vG~gAyl~~L~d~vIm~~~s~i~lt-----------------Gp-~~l~~-~lG~eVy~s~~eLGG  298 (333)
T d1uyra1         238 YHDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIILT-----------------GA-PAINK-MLGREVYTSNLQLGG  298 (333)
T ss_dssp             HHHSCEEEEESSCEETHHHHHHHHTCCEEEETTCCEESS-----------------CH-HHHHH-HSSSCCCSCTHHHHS
T ss_pred             cCCCCEEEEEeCCccccceeecccccEEEEeCCceEEee-----------------CH-HHHHH-hcCccccCChhHhCC
Confidence            357999999999999999999999999999988877654                 32 22232 245554  3332   


Q ss_pred             ---HHHcCCccEEcCCchHHHHHHHHHHHHHh
Q 004972          171 ---GWKLGLIDAVVTSEELLKVSRLWALDIAA  199 (721)
Q Consensus       171 ---A~~~Glv~~vv~~~~l~~~a~~~a~~~a~  199 (721)
                         ..+-|++|.+++.|   .++.+.+.++.+
T Consensus       299 ~~i~~~nGv~h~~a~dd---~eai~~i~~~LS  327 (333)
T d1uyra1         299 TQIMYNNGVSHLTAVDD---LAGVEKIVEWMS  327 (333)
T ss_dssp             HHHHHHHTSSSEEESSH---HHHHHHHHHHHT
T ss_pred             HhHHhhCCCceEEeCCH---HHHHHHHHHHHh
Confidence               34689999999765   344445555444

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.04  E-value=0.097  Score=45.12  Aligned_cols=81  Identities=12%  Similarity=0.025  Sum_probs=60.3

Q ss_pred             ceeEEEEcC----CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcc
Q 004972          305 VRKVAVIGG----GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS  380 (721)
Q Consensus       305 ~~kI~VIG~----G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  380 (721)
                      .++|+|||+    +..|..++..|.+.||+|+.++...+.+                             ..+.+..+++
T Consensus        19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i-----------------------------~G~~~~~sl~   69 (139)
T d2d59a1          19 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEV-----------------------------LGRKCYPSVL   69 (139)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----------------------------TTEECBSSGG
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCccccc-----------------------------CCCccccccc
Confidence            368999997    5689999999999999999888754321                             1244455665


Q ss_pred             cc-CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEE
Q 004972          381 EF-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA  417 (721)
Q Consensus       381 ~l-~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~  417 (721)
                      ++ ...|+|+.++|  .+...++++++... ....+++
T Consensus        70 dlp~~iD~v~i~vp--~~~~~~~~~e~~~~-g~k~v~~  104 (139)
T d2d59a1          70 DIPDKIEVVDLFVK--PKLTMEYVEQAIKK-GAKVVWF  104 (139)
T ss_dssp             GCSSCCSEEEECSC--HHHHHHHHHHHHHH-TCSEEEE
T ss_pred             ccCccceEEEEEeC--HHHHHHHHHHHHHh-CCCEEEE
Confidence            55 46899999999  88888999887765 3445544

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.02  E-value=0.017  Score=48.95  Aligned_cols=32  Identities=16%  Similarity=0.038  Sum_probs=30.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVN  337 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~  337 (721)
                      ++|+|||+|.+|.-+|..|.+.|.+|+++.++
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            58999999999999999999999999999976

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.01  E-value=0.1  Score=44.66  Aligned_cols=81  Identities=12%  Similarity=0.095  Sum_probs=51.4

Q ss_pred             eEEEEcC-CCCcHHHHHHHHHC-CCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccC
Q 004972          307 KVAVIGG-GLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK  383 (721)
Q Consensus       307 kI~VIG~-G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~  383 (721)
                      ||+|+|+ |.||..++..+.+. +++++ .+|+.... ..                                    ....
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~~~-~~------------------------------------~~~~   43 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPL-SL------------------------------------LTDG   43 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTCCT-HH------------------------------------HHTT
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCch-hh------------------------------------hccc
Confidence            7999995 99999999887664 56654 45542110 00                                    0124


Q ss_pred             CCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHHHHh
Q 004972          384 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG  429 (721)
Q Consensus       384 ~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~~l~  429 (721)
                      ++|+||+-..  ++...+.++..   +..+..++..|++++..++.
T Consensus        44 ~~DvvIDFS~--p~~~~~~~~~~---~~~~~~~ViGTTG~~~~~~~   84 (135)
T d1yl7a1          44 NTEVVIDFTH--PDVVMGNLEFL---IDNGIHAVVGTTGFTAERFQ   84 (135)
T ss_dssp             TCSEEEECCC--TTTHHHHHHHH---HHTTCEEEECCCCCCHHHHH
T ss_pred             cCCEEEEccc--HHHHHHHHHHH---HhcCCCEEEeccccchhHHH
Confidence            6899999775  44444444443   34566677888888865444

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=93.99  E-value=0.033  Score=55.81  Aligned_cols=71  Identities=21%  Similarity=0.193  Sum_probs=50.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHH-CCC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-ccc
Q 004972          306 RKVAVIGGGLMGSGIATAHIL-NNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF  382 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~-~G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~l  382 (721)
                      ++++|||+|..+..-+..+.. .++ +|.+||+++++.++..+++.       +...          -.+...++. +++
T Consensus       129 ~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~-------~~~g----------~~v~~~~s~~eav  191 (340)
T d1x7da_         129 RKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLK-------EYSG----------LTIRRASSVAEAV  191 (340)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHT-------TCTT----------CEEEECSSHHHHH
T ss_pred             ceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhh-------hccC----------CCceecCCHHHHH
Confidence            579999999999988877654 454 89999999998777543221       1100          124455666 678


Q ss_pred             CCCCEEEEccc
Q 004972          383 KDVDMVIEAVI  393 (721)
Q Consensus       383 ~~aDlVIeavp  393 (721)
                      ++||+|+.|.+
T Consensus       192 ~~ADIi~t~Ta  202 (340)
T d1x7da_         192 KGVDIITTVTA  202 (340)
T ss_dssp             TTCSEEEECCC
T ss_pred             hcCCceeeccc
Confidence            99999998875

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.99  E-value=0.014  Score=49.46  Aligned_cols=34  Identities=24%  Similarity=0.311  Sum_probs=31.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  339 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~  339 (721)
                      ++|.|||+|..|.-+|..|++.|++|+++++++.
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~   66 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM   66 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEEecccc
Confidence            4799999999999999999999999999998764

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.94  E-value=0.045  Score=45.75  Aligned_cols=80  Identities=23%  Similarity=0.223  Sum_probs=58.3

Q ss_pred             eeEEEEcC----CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccc
Q 004972          306 RKVAVIGG----GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  381 (721)
Q Consensus       306 ~kI~VIG~----G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  381 (721)
                      ++|+|||+    |..|..+...|.+.||+|+.++.+.+.+                             ..+....++++
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i-----------------------------~G~~~y~sl~~   52 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----------------------------EGLKCYRSVRE   52 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----------------------------TTEECBSSGGG
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccc-----------------------------cCccccccchh
Confidence            68999996    6779999999999999988887654321                             12444556655


Q ss_pred             c-CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEE
Q 004972          382 F-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA  417 (721)
Q Consensus       382 l-~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~  417 (721)
                      + ...|+++.++|  .+...+++++.... ....++.
T Consensus        53 lp~~~D~vvi~vp--~~~~~~~l~~~~~~-g~k~v~~   86 (116)
T d1y81a1          53 LPKDVDVIVFVVP--PKVGLQVAKEAVEA-GFKKLWF   86 (116)
T ss_dssp             SCTTCCEEEECSC--HHHHHHHHHHHHHT-TCCEEEE
T ss_pred             ccccceEEEEEeC--HHHHHHHHHHHHhc-CCceEEe
Confidence            5 45699999999  88888888886654 3344544

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.92  E-value=0.028  Score=49.09  Aligned_cols=93  Identities=14%  Similarity=0.145  Sum_probs=58.8

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCC---ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCcee-ccCcc
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNI---YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDYS  380 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~---~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~  380 (721)
                      .||||||+ |+.|.-+.+.|.+.+|   ++..+..+...-+.            +...          ...+.. ..+.+
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~------------i~~~----------~~~~~~~~~~~~   60 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQR------------MGFA----------ESSLRVGDVDSF   60 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCE------------EEET----------TEEEECEEGGGC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcc------------eeec----------cccchhccchhh
Confidence            47999998 9999999999987665   56665543322000            1000          001111 11225


Q ss_pred             ccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCH
Q 004972          381 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL  425 (721)
Q Consensus       381 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i  425 (721)
                      ...++|+++.|+|  ...-.++..++   ...+++++++++....
T Consensus        61 ~~~~~d~vf~a~p--~~~s~~~~~~~---~~~g~~VID~Ss~fR~  100 (144)
T d2hjsa1          61 DFSSVGLAFFAAA--AEVSRAHAERA---RAAGCSVIDLSGALEP  100 (144)
T ss_dssp             CGGGCSEEEECSC--HHHHHHHHHHH---HHTTCEEEETTCTTTT
T ss_pred             hhccceEEEecCC--cchhhhhcccc---ccCCceEEeechhhcc
Confidence            5789999999998  55555555554   3467889999887653

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=93.87  E-value=0.069  Score=47.58  Aligned_cols=39  Identities=21%  Similarity=0.064  Sum_probs=34.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  344 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  344 (721)
                      .+|.|+|+|.+|...++.+...|.++++.|.++++.+.+
T Consensus        32 ~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a   70 (168)
T d1uufa2          32 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAA   70 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHH
T ss_pred             CEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHH
Confidence            479999999999999998888999999999999987654

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=93.80  E-value=0.16  Score=48.46  Aligned_cols=41  Identities=24%  Similarity=0.229  Sum_probs=35.0

Q ss_pred             eEEEE-cC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHH
Q 004972          307 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT  347 (721)
Q Consensus       307 kI~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~  347 (721)
                      ||++| |+ +-+|.++|..|++.|++|++.|++++.++...+.
T Consensus         3 KValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~   45 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKE   45 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            67766 65 6699999999999999999999999988876543

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=93.79  E-value=0.0066  Score=51.74  Aligned_cols=36  Identities=28%  Similarity=0.363  Sum_probs=32.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYL  341 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~  341 (721)
                      ++|.|||+|.+|.-+|..+.+.|.+|+++.+++.-+
T Consensus        26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l   61 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV   61 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             CeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccC
Confidence            689999999999999999999999999999876543

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=93.76  E-value=0.017  Score=49.70  Aligned_cols=36  Identities=33%  Similarity=0.575  Sum_probs=33.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYL  341 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~  341 (721)
                      ++|.|||+|.+|.-+|..|++.|++|+++++.+..+
T Consensus        36 k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l   71 (133)
T d1q1ra2          36 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVL   71 (133)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT
T ss_pred             CEEEEECCchHHHHHHHHHHhhCcceeeeeeccccc
Confidence            589999999999999999999999999999876543

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=93.71  E-value=0.0091  Score=50.28  Aligned_cols=36  Identities=25%  Similarity=0.294  Sum_probs=29.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHH---CCCceEEEeCCHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHIL---NNIYVVLKEVNSEYL  341 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~---~G~~V~l~d~~~~~~  341 (721)
                      ++|+|||+|.+|.-+|..+..   .|.+|+++++.+.-+
T Consensus        21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL   59 (117)
T d1aoga2          21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL   59 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS
T ss_pred             CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh
Confidence            589999999999999977654   456899999865443

>d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.70  E-value=0.42  Score=45.81  Aligned_cols=161  Identities=16%  Similarity=0.204  Sum_probs=99.1

Q ss_pred             EEeCCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHh
Q 004972           18 ITLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE   95 (721)
Q Consensus        18 i~l~~p~~--Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~   95 (721)
                      |.-|+|..  ..++.+-.+...+.++.++.. ++-.|.|.-. ..|..|-+-+.-          ...+...+++ .++.
T Consensus        74 vian~~~~~~G~~~~~~~~Ka~rfi~lc~~~-~iPlv~l~dt-pGf~~G~~~E~~----------g~~~~ga~~~-~a~a  140 (271)
T d2a7sa2          74 IVANQPTHFAGCLDINASEKAARFVRTCDCF-NIPIVMLVDV-PGFLPGTDQEYN----------GIIRRGAKLL-YAYG  140 (271)
T ss_dssp             EEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHHHH----------CHHHHHHHHH-HHHH
T ss_pred             EEeccccccCCCcCHHHHHHHHHHHHHHHHh-CCceEEeech-hhhhhhccHHHh----------hHHHHHHHHH-HHHH
Confidence            33356543  689999999999999888754 4556666433 235555543321          1234455666 7799


Q ss_pred             hCCCcEEEEECCcccccchHh----hhhcCEEEeeCCceEeCc--ccccCcccc---------ccccccccCHHHHHHHH
Q 004972           96 DCKKPIVAAVEGLALGGGLEL----AMGCHARIAAPKTQLGLP--ELTLGVIPG---------TQRLPRLVGLSKAIEMM  160 (721)
Q Consensus        96 ~~~~p~Iaav~G~a~GgG~~l----alacD~ria~~~a~~~~p--e~~~Gl~P~---------~~~l~r~~G~~~a~~l~  160 (721)
                      ++..|.|+.|-|.++|+|...    .+.+|++++.++++++.-  |....++-.         ....... =..  ....
T Consensus       141 ~~~vP~isvi~~~~~G~~~~am~~~~~~~d~~~AwP~A~igvMgpegaa~v~~~~~l~~~~~~~~~~~~~-~~~--~~~e  217 (271)
T d2a7sa2         141 EATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIAVMGASGAVGFVYRQQLAEAAANGEDIDKL-RLR--LQQE  217 (271)
T ss_dssp             HCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEESSCHHHHHHHHTTTTTTGGGTSSCCTTSS-TTH--HHHH
T ss_pred             hCCCCeEEEEeCCccchhhhhhcccccccceEEEecceeEeecCHHHHHHHHHHHhhhhhhhcccchHHH-HHH--HHHH
Confidence            999999999999999987432    235799999998888763  222221110         0000000 001  1111


Q ss_pred             HcCCCcCHHHHHHcCCccEEcCCchHHHHHHHHH
Q 004972          161 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWA  194 (721)
Q Consensus       161 ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a  194 (721)
                      +.-+.-++..|.+.|++|.|+++.+..+......
T Consensus       218 ~~e~~~~p~~aa~~g~iD~VIdP~dTR~~L~~~L  251 (271)
T d2a7sa2         218 YEDTLVNPYVAAERGYVDAVIPPSHTRGYIGTAL  251 (271)
T ss_dssp             HHTTTSBSHHHHHHTSSSEECCGGGHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHcCCCCeeECHHHHHHHHHHHH
Confidence            2333456778888999999999888766544443

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=93.56  E-value=0.014  Score=49.32  Aligned_cols=35  Identities=14%  Similarity=0.093  Sum_probs=32.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY  340 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~  340 (721)
                      ++|+|||+|.+|.-+|..|++.|.+|+++++.+.-
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~   57 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPL   57 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhcchhheEeeccchh
Confidence            68999999999999999999999999999987653

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=93.49  E-value=0.016  Score=58.29  Aligned_cols=36  Identities=33%  Similarity=0.376  Sum_probs=31.9

Q ss_pred             CceeEEEEcCCCCcHHHHHHHHHCC--CceEEEeCCHH
Q 004972          304 GVRKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSE  339 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~~la~~G--~~V~l~d~~~~  339 (721)
                      .|+||+|||+|.-|...|..|++.|  ++|++++++.+
T Consensus         3 ~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           3 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            4789999999999999999998876  59999999854

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=93.40  E-value=0.11  Score=51.92  Aligned_cols=40  Identities=18%  Similarity=0.104  Sum_probs=35.2

Q ss_pred             ceeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 004972          305 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG  344 (721)
Q Consensus       305 ~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  344 (721)
                      -++|.|.|+ |.+|+.++..|.++|++|+...|+.+..+..
T Consensus        11 gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~   51 (342)
T d1y1pa1          11 GSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANL   51 (342)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             cCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHH
Confidence            478999997 9999999999999999999999998775543

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.19  E-value=0.053  Score=49.09  Aligned_cols=104  Identities=14%  Similarity=0.146  Sum_probs=57.9

Q ss_pred             ceeEEEEcC-CCCcHHHHHHHHHC-CCceEEEe-CCHH-HHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc-
Q 004972          305 VRKVAVIGG-GLMGSGIATAHILN-NIYVVLKE-VNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-  379 (721)
Q Consensus       305 ~~kI~VIG~-G~mG~~iA~~la~~-G~~V~l~d-~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-  379 (721)
                      |.||+|||+ |..|.-+.+.|.++ .+++.-.. .+.+ ..-+   .+......+.....          .......+. 
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk---~~~~~~~~~~~~~~----------~~~~~~~~~~   67 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGK---LISDLHPQLKGIVD----------LPLQPMSDVR   67 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTC---BHHHHCGGGTTTCC----------CBEEEESCGG
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccc---cccccccccccccc----------cccccchhhh
Confidence            679999996 99999999999987 55665432 2111 0000   00000000000000          011112222 


Q ss_pred             cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH
Q 004972          380 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN  426 (721)
Q Consensus       380 ~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~  426 (721)
                      ....++|+|+.|+|  .....++...+   ...++.++++++.....
T Consensus        68 ~~~~~~dvvf~alp--~~~s~~~~~~~---~~~~~~vIDlSadfRl~  109 (179)
T d2g17a1          68 DFSADVDVVFLATA--HEVSHDLAPQF---LQAGCVVFDLSGAFRVN  109 (179)
T ss_dssp             GTCTTCCEEEECSC--HHHHHHHHHHH---HHTTCEEEECSSTTSSS
T ss_pred             hhhcccceeecccc--chhHHHHhhhh---hhcCceeeccccccccc
Confidence            34578999999999  55444554444   34677888888866543

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.14  E-value=0.0053  Score=58.29  Aligned_cols=29  Identities=28%  Similarity=0.305  Sum_probs=25.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEE
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLK  334 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~  334 (721)
                      +||+|||+|.+|.+.|..|+++|++|+++
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~v~v~   29 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHSVLQP   29 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSS
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCceEE
Confidence            48999999999999999999999875443

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.12  E-value=0.024  Score=55.91  Aligned_cols=34  Identities=29%  Similarity=0.325  Sum_probs=31.4

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCH
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  338 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~  338 (721)
                      -.||+|||+|.-|.+-|..|+++|++|++++.+.
T Consensus         5 ~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~   38 (449)
T d2dw4a2           5 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD   38 (449)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            3589999999999999999999999999999764

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=93.11  E-value=0.035  Score=49.91  Aligned_cols=35  Identities=23%  Similarity=0.369  Sum_probs=27.2

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCC-CceEE-EeCCHH
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNN-IYVVL-KEVNSE  339 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G-~~V~l-~d~~~~  339 (721)
                      |.||||-|.|.+|..+.+.+...+ .+|+. -|+++.
T Consensus         1 M~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~   37 (171)
T d1cf2o1           1 MKAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPD   37 (171)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCS
T ss_pred             CeEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcH
Confidence            579999999999999999887765 56654 445543

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.08  E-value=0.4  Score=45.28  Aligned_cols=41  Identities=22%  Similarity=0.158  Sum_probs=34.1

Q ss_pred             eEEEEcCC-CCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHH
Q 004972          307 KVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT  347 (721)
Q Consensus       307 kI~VIG~G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~  347 (721)
                      .|-|-|++ -+|..+|..|++.|..|+++|++++.++...+.
T Consensus         9 v~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~   50 (244)
T d1yb1a_           9 IVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAK   50 (244)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            34455874 599999999999999999999999998876543

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=93.05  E-value=0.021  Score=56.26  Aligned_cols=32  Identities=16%  Similarity=0.491  Sum_probs=29.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCH
Q 004972          307 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  338 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~  338 (721)
                      +|.|||+|.+|.++|..|++.|. +|+++|+++
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            69999999999999999999996 799999864

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=93.03  E-value=0.014  Score=49.01  Aligned_cols=34  Identities=18%  Similarity=0.175  Sum_probs=29.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHH---CCCceEEEeCCHH
Q 004972          306 RKVAVIGGGLMGSGIATAHIL---NNIYVVLKEVNSE  339 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~---~G~~V~l~d~~~~  339 (721)
                      ++|+|||+|..|.-+|..+++   .|.+|+++++.+.
T Consensus        19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~   55 (117)
T d1feca2          19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDM   55 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred             CeEEEECCChHHHHHHHHhHhhcccccccceeccccc
Confidence            689999999999999987654   3889999998754

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=93.02  E-value=0.02  Score=54.14  Aligned_cols=32  Identities=25%  Similarity=0.387  Sum_probs=29.8

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCH
Q 004972          307 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS  338 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~  338 (721)
                      ||+|||+|.-|.+.|..|+++|+ +|++++.++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            79999999999999999999996 799999864

>d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=92.97  E-value=0.22  Score=47.64  Aligned_cols=166  Identities=15%  Similarity=0.097  Sum_probs=97.2

Q ss_pred             eCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhC
Q 004972           20 LINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDC   97 (721)
Q Consensus        20 l~~p~--~Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   97 (721)
                      =|+|.  ..+++.+-.+...+.++.++.. ++-.|.|.=. ..|..|-+-+.          ....+...+++ .++.++
T Consensus        73 an~~~~~~G~~~~~~a~Kaarfi~lc~~~-~iPlv~l~D~-pGf~~G~~~E~----------~g~i~~ga~~~-~a~a~~  139 (264)
T d1on3a2          73 ANQPSVMSGCLDINASDKAAEFVNFCDSF-NIPLVQLVDV-PGFLPGVQQEY----------GGIIRHGAKML-YAYSEA  139 (264)
T ss_dssp             EECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHHH----------TTHHHHHHHHH-HHHHHC
T ss_pred             eccchhcccccChHHHHHHHHHHHHHHhc-CCceEEEecc-ccccccHHHHH----------HHHHHHHHHHH-HHHHcC
Confidence            35664  3789999998888888888754 4555666432 23666654322          12334555666 779999


Q ss_pred             CCcEEEEECCcccccchHhh----hhcCEEEeeCCceEeCc--ccccCcccccccccc--ccCHHHHHHH-HHcCCCcCH
Q 004972           98 KKPIVAAVEGLALGGGLELA----MGCHARIAAPKTQLGLP--ELTLGVIPGTQRLPR--LVGLSKAIEM-MLLSKSITS  168 (721)
Q Consensus        98 ~~p~Iaav~G~a~GgG~~la----lacD~ria~~~a~~~~p--e~~~Gl~P~~~~l~r--~~G~~~a~~l-~ltg~~~~a  168 (721)
                      .+|.|+.|-|.++|+|..-.    +.+|++++.+++.++.-  |....++-. ..+..  -....+...+ -+.-+.-++
T Consensus       140 ~vP~itvi~rkayG~g~~am~g~~~~~d~~~aWP~A~~~vMg~Egaa~v~~~-~el~a~~~~~~~~~~~~~e~~~~~~~p  218 (264)
T d1on3a2         140 TVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIAVMGAEGAANVIFR-KEIKAADDPDAMRAEKIEEYQNAFNTP  218 (264)
T ss_dssp             CSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTTCEEESSCHHHHHHHHTH-HHHHHSSCHHHHHHHHHHHHHHHHSSH
T ss_pred             CCCEEEEEeccccCccccccccccCChhheeeHHhhHhhhccHHHHHHHHHh-hhhhhhhhhhhhhHHHHHHHHHHhcCH
Confidence            99999999999999875333    24678887777776652  211111100 00000  0000000000 011122356


Q ss_pred             HHHHHcCCccEEcCCchHHHHHHHHHHHHHh
Q 004972          169 EEGWKLGLIDAVVTSEELLKVSRLWALDIAA  199 (721)
Q Consensus       169 ~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~  199 (721)
                      -.|.+.|.+|.|+++.+.........+.+..
T Consensus       219 ~~aA~~g~iD~VIdP~eTR~~L~~aLe~~~~  249 (264)
T d1on3a2         219 YVAAARGQVDDVIDPADTRRKIASALEMYAT  249 (264)
T ss_dssp             HHHHHTTSSSEECCGGGHHHHHHHHHHHGGG
T ss_pred             HHHHHcCCCCeeECHHHHHHHHHHHHHHHhc
Confidence            7788899999999998876655555544443

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.91  E-value=0.047  Score=49.08  Aligned_cols=40  Identities=13%  Similarity=0.120  Sum_probs=33.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCc-eEEEeCCHHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIY-VVLKEVNSEYLLKGI  345 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~-V~l~d~~~~~~~~~~  345 (721)
                      .+|.|+|+|.+|...++.+...|.. |++.|.++++++.++
T Consensus        30 ~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~   70 (174)
T d1f8fa2          30 SSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAK   70 (174)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH
T ss_pred             CEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHH
Confidence            5799999999999999998888875 567899999877754

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=92.89  E-value=0.35  Score=45.41  Aligned_cols=71  Identities=24%  Similarity=0.217  Sum_probs=44.2

Q ss_pred             CceeEEEEcCCCCcHHHHH----HHHH--CCCceE-EEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceec
Q 004972          304 GVRKVAVIGGGLMGSGIAT----AHIL--NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV  376 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~----~la~--~G~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~  376 (721)
                      +.-||||||+|.+|+-++.    .+.+  .+++|+ ++|++++.++...++.          + +         ......
T Consensus        15 k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~----------~-~---------~~~~~~   74 (237)
T d2nvwa1          15 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQL----------Q-L---------KHATGF   74 (237)
T ss_dssp             CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHT----------T-C---------TTCEEE
T ss_pred             CCeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhc----------c-c---------ccceee
Confidence            3358999999998765554    3333  356766 8999998876643210          0 0         112233


Q ss_pred             cCccc-c--CCCCEEEEcccC
Q 004972          377 LDYSE-F--KDVDMVIEAVIE  394 (721)
Q Consensus       377 ~~~~~-l--~~aDlVIeavpe  394 (721)
                      ++++. +  .+.|+|+.|+|.
T Consensus        75 ~~~~~l~~~~~iD~V~i~tp~   95 (237)
T d2nvwa1          75 DSLESFAQYKDIDMIVVSVKV   95 (237)
T ss_dssp             SCHHHHHHCTTCSEEEECSCH
T ss_pred             cchhhcccccccceeeccCCC
Confidence            45533 2  568999999993

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=92.89  E-value=0.3  Score=47.45  Aligned_cols=41  Identities=27%  Similarity=0.296  Sum_probs=34.4

Q ss_pred             eEEEE-c-CCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHH
Q 004972          307 KVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT  347 (721)
Q Consensus       307 kI~VI-G-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~  347 (721)
                      |++|| | +|-+|.++|..|++.|++|++.|++.+.++...+.
T Consensus        26 K~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~   68 (294)
T d1w6ua_          26 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQ   68 (294)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHH
Confidence            55555 5 68999999999999999999999999988776543

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.85  E-value=0.021  Score=56.50  Aligned_cols=35  Identities=23%  Similarity=0.277  Sum_probs=32.0

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHH
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  339 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~  339 (721)
                      |..|.|||+|.-|.++|..|++.|++|++++.+..
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~   35 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNH   35 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred             CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            56899999999999999999999999999998653

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.78  E-value=0.18  Score=44.43  Aligned_cols=39  Identities=23%  Similarity=0.170  Sum_probs=35.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  344 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  344 (721)
                      ++|.|+|+|.+|...++.+...|.+|++.+.++++++.+
T Consensus        29 ~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~   67 (168)
T d1rjwa2          29 EWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELA   67 (168)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhh
Confidence            579999999999999898889999999999999987765

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.73  E-value=0.069  Score=47.67  Aligned_cols=73  Identities=19%  Similarity=0.222  Sum_probs=54.9

Q ss_pred             eeEEEEcCC-CCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972          306 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  384 (721)
                      ++|.|||-+ ..|.++|..|++.|..|++++.....+.                                     +.+++
T Consensus        40 k~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~l~-------------------------------------~~~~~   82 (170)
T d1a4ia1          40 RHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLD-------------------------------------EEVNK   82 (170)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHH-------------------------------------HHHTT
T ss_pred             ceEEEEecCCccchHHHHHHHhccCceEEEecccccHH-------------------------------------HHHhh
Confidence            589999985 5899999999999999999997543321                                     23578


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST  422 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~  422 (721)
                      +|+||.|+...--++       ...+++++++++...+
T Consensus        83 aDivi~a~G~~~~i~-------~~~vk~g~iviDvgi~  113 (170)
T d1a4ia1          83 GDILVVATGQPEMVK-------GEWIKPGAIVIDCGIN  113 (170)
T ss_dssp             CSEEEECCCCTTCBC-------GGGSCTTCEEEECCCB
T ss_pred             ccchhhccccccccc-------cccccCCCeEeccCcc
Confidence            999999997333222       3467899999876544

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=92.67  E-value=0.016  Score=49.45  Aligned_cols=35  Identities=23%  Similarity=0.330  Sum_probs=32.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY  340 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~  340 (721)
                      +++.|||+|.+|.-+|..+++.|.+|+++++.+.-
T Consensus        27 ~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~i   61 (125)
T d1ojta2          27 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGL   61 (125)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccc
Confidence            68999999999999999999999999999987643

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=92.47  E-value=0.029  Score=54.44  Aligned_cols=31  Identities=23%  Similarity=0.323  Sum_probs=29.4

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCceEEEeCC
Q 004972          307 KVAVIGGGLMGSGIATAHILNNIYVVLKEVN  337 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~  337 (721)
                      -|.|||+|..|.+.|..|+++|++|+++|+.
T Consensus         5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~   35 (281)
T d2gf3a1           5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAF   35 (281)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            3899999999999999999999999999975

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.42  E-value=0.048  Score=51.46  Aligned_cols=37  Identities=22%  Similarity=0.316  Sum_probs=33.7

Q ss_pred             CCceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHH
Q 004972          303 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  339 (721)
Q Consensus       303 ~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~  339 (721)
                      ..-++|.|||+|.-|...|..+++.|++|++++.+++
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~   83 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK   83 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccc
Confidence            3457999999999999999999999999999998764

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=92.38  E-value=0.32  Score=46.55  Aligned_cols=41  Identities=24%  Similarity=0.265  Sum_probs=34.9

Q ss_pred             eEEEE-c-CCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHH
Q 004972          307 KVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT  347 (721)
Q Consensus       307 kI~VI-G-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~  347 (721)
                      |+++| | ++-+|.++|..|++.|++|++.|++++.+++..+.
T Consensus         6 KvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~   48 (264)
T d1spxa_           6 KVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQ   48 (264)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            66666 5 47899999999999999999999999998876543

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.33  E-value=0.27  Score=47.24  Aligned_cols=41  Identities=27%  Similarity=0.233  Sum_probs=35.1

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHH
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  346 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  346 (721)
                      +++-|.|+ +-+|.++|..|++.|.+|++.+|+++.++...+
T Consensus        15 K~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~   56 (269)
T d1xu9a_          15 KKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVS   56 (269)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            45667787 459999999999999999999999999887643

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=92.33  E-value=0.3  Score=46.42  Aligned_cols=41  Identities=20%  Similarity=0.130  Sum_probs=34.5

Q ss_pred             eeEEEE-cC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHH
Q 004972          306 RKVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  346 (721)
Q Consensus       306 ~kI~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  346 (721)
                      .||++| |+ +-+|.++|..|++.|++|+++|++++.++...+
T Consensus        10 nKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~   52 (251)
T d2c07a1          10 NKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVD   52 (251)
T ss_dssp             SCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHH
Confidence            466655 76 679999999999999999999999998877644

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=92.30  E-value=0.48  Score=45.09  Aligned_cols=41  Identities=20%  Similarity=0.090  Sum_probs=35.8

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHH
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  346 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  346 (721)
                      |++-|.|+ +-+|.++|..|++.|++|++.+++++.++.+.+
T Consensus         7 K~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~   48 (258)
T d1ae1a_           7 TTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLE   48 (258)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            56788886 779999999999999999999999988877643

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.24  E-value=0.4  Score=46.77  Aligned_cols=42  Identities=21%  Similarity=0.207  Sum_probs=34.8

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHH
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT  347 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~  347 (721)
                      +.+-|.|+ +-+|.++|..|++.|++|++.+++++.++...+.
T Consensus        13 KvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~e   55 (297)
T d1yxma1          13 QVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADE   55 (297)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            34556676 6699999999999999999999999988876543

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=91.99  E-value=0.11  Score=46.62  Aligned_cols=40  Identities=20%  Similarity=0.263  Sum_probs=35.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI  345 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~  345 (721)
                      .+|.|+|+|.+|...++.+...|. .|++.|+++++++.++
T Consensus        30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~   70 (174)
T d1e3ia2          30 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK   70 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred             CEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHH
Confidence            479999999999999999999997 6889999999877653

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.99  E-value=0.74  Score=40.39  Aligned_cols=40  Identities=15%  Similarity=0.186  Sum_probs=34.3

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCC-CceEEEeCCHHHHHHHH
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNN-IYVVLKEVNSEYLLKGI  345 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~  345 (721)
                      .+|.|+|+ |.+|...++.+...| ..|+++++++++++.++
T Consensus        29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~   70 (170)
T d1jvba2          29 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAK   70 (170)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHH
T ss_pred             CEEEEEeccccceeeeeecccccccccccccccchhhHHHHH
Confidence            57999995 999999998888778 48999999999877753

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.82  E-value=0.039  Score=53.01  Aligned_cols=34  Identities=32%  Similarity=0.330  Sum_probs=31.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSE  339 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~  339 (721)
                      .+|.|||+|.-|...|..|+++|+ +|++++++++
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~   36 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE   36 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            379999999999999999999996 8999998764

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=91.81  E-value=0.17  Score=45.31  Aligned_cols=40  Identities=18%  Similarity=0.075  Sum_probs=35.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI  345 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~  345 (721)
                      .+|.|+|+|.+|...++.+...|. +|++.|+++++++.++
T Consensus        29 ~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~   69 (174)
T d1jqba2          29 SSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAK   69 (174)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHH
T ss_pred             CEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHH
Confidence            379999999999999999988896 7999999999877763

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=91.78  E-value=0.058  Score=47.82  Aligned_cols=72  Identities=15%  Similarity=0.134  Sum_probs=52.7

Q ss_pred             eeEEEEcCCC-CcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCC
Q 004972          306 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD  384 (721)
Q Consensus       306 ~kI~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~  384 (721)
                      ++|.|||-+. +|.++|..|.+.|..|++++.....+.                                     +.+++
T Consensus        38 K~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~~l~-------------------------------------~~~~~   80 (166)
T d1b0aa1          38 LNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLR-------------------------------------HHVEN   80 (166)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHH-------------------------------------HHHHH
T ss_pred             ceEEEEeccccccHHHHHHHHHhhccccccccccchhH-------------------------------------HHHhh
Confidence            5899999855 899999999999999999986543222                                     23467


Q ss_pred             CCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCC
Q 004972          385 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS  421 (721)
Q Consensus       385 aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts  421 (721)
                      ||+||.|+.-.--++       .+.+++++++++...
T Consensus        81 ADivI~a~G~p~~i~-------~~~vk~g~vvIDvGi  110 (166)
T d1b0aa1          81 ADLLIVAVGKPGFIP-------GDWIKEGAIVIDVGI  110 (166)
T ss_dssp             CSEEEECSCCTTCBC-------TTTSCTTCEEEECCC
T ss_pred             hhHhhhhccCccccc-------ccccCCCcEEEecCc
Confidence            999999986222222       345788998887543

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=91.72  E-value=0.2  Score=46.91  Aligned_cols=40  Identities=18%  Similarity=0.211  Sum_probs=36.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  345 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  345 (721)
                      ++|+|-|.|.+|..+|..|.+.|..|+..|.++..++...
T Consensus        40 ~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~   79 (230)
T d1leha1          40 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAV   79 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHH
Confidence            5899999999999999999999999999999998876653

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=91.65  E-value=0.067  Score=46.95  Aligned_cols=36  Identities=11%  Similarity=0.017  Sum_probs=30.1

Q ss_pred             eEEEE--cCCCCcHHHHHHHHHCCCceEEEeCCHHHHH
Q 004972          307 KVAVI--GGGLMGSGIATAHILNNIYVVLKEVNSEYLL  342 (721)
Q Consensus       307 kI~VI--G~G~mG~~iA~~la~~G~~V~l~d~~~~~~~  342 (721)
                      .+.|+  |.|.+|..+|..|++.|.+|+++++.+.-..
T Consensus        41 ~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~   78 (156)
T d1djqa2          41 RVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANY   78 (156)
T ss_dssp             EEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTH
T ss_pred             ceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcccc
Confidence            44454  9999999999999999999999998765433

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.57  E-value=0.043  Score=51.23  Aligned_cols=31  Identities=16%  Similarity=0.210  Sum_probs=29.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHCCCceEEEeCCH
Q 004972          308 VAVIGGGLMGSGIATAHILNNIYVVLKEVNS  338 (721)
Q Consensus       308 I~VIG~G~mG~~iA~~la~~G~~V~l~d~~~  338 (721)
                      |.|||+|.-|...|..|+++|++|+++|+++
T Consensus         8 viViGaG~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           8 VIVLGTGITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            8999999999999999999999999999975

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=91.46  E-value=0.089  Score=46.25  Aligned_cols=93  Identities=17%  Similarity=0.120  Sum_probs=55.9

Q ss_pred             eEEEEcC-CCCcHHHHHHHHHCCC---ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCcee-ccCccc
Q 004972          307 KVAVIGG-GLMGSGIATAHILNNI---YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDYSE  381 (721)
Q Consensus       307 kI~VIG~-G~mG~~iA~~la~~G~---~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~  381 (721)
                      ||||||+ |..|.-+.+.|.++.+   ++..+..+... .+           .+...          ...... ......
T Consensus         3 kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~-G~-----------~~~~~----------~~~~~~~~~~~~~   60 (154)
T d2gz1a1           3 TVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSA-GK-----------SLKFK----------DQDITIEETTETA   60 (154)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGT-TC-----------EEEET----------TEEEEEEECCTTT
T ss_pred             EEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccc-cc-----------ccccc----------CCcccccccchhh
Confidence            7999998 9999999999988865   34444432211 00           00000          001111 112245


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH
Q 004972          382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN  426 (721)
Q Consensus       382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~  426 (721)
                      ..++|+++.+.|  .....+...+   ....++.|+++++.....
T Consensus        61 ~~~~d~~f~~~~--~~~s~~~~~~---~~~~~~~VIDlSsdfR~~  100 (154)
T d2gz1a1          61 FEGVDIALFSAG--SSTSAKYAPY---AVKAGVVVVDNTSYFRQN  100 (154)
T ss_dssp             TTTCSEEEECSC--HHHHHHHHHH---HHHTTCEEEECSSTTTTC
T ss_pred             hhhhhhhhhccC--ccchhhHHhh---hccccceehhcChhhhcc
Confidence            688999999998  4443444333   335788999999876643

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.44  E-value=0.052  Score=48.48  Aligned_cols=40  Identities=18%  Similarity=0.086  Sum_probs=35.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  345 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  345 (721)
                      .+|.|+|+|.+|...++.+...|.+|+++|+++++++.++
T Consensus        29 ~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~   68 (168)
T d1piwa2          29 KKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAM   68 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHH
T ss_pred             CEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhh
Confidence            5899999999999988888888999999999999887653

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=91.41  E-value=0.35  Score=43.08  Aligned_cols=40  Identities=18%  Similarity=0.146  Sum_probs=35.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI  345 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~  345 (721)
                      .+|.|+|+|.+|...++.+...|. .|++.|+++++++.++
T Consensus        29 ~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~   69 (174)
T d1p0fa2          29 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI   69 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHH
Confidence            479999999999999999988886 7999999999988764

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=91.37  E-value=0.045  Score=49.36  Aligned_cols=98  Identities=10%  Similarity=0.129  Sum_probs=56.0

Q ss_pred             ceeEEEEcC-CCCcHHHHHHHHHCC-CceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcc-c
Q 004972          305 VRKVAVIGG-GLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-E  381 (721)
Q Consensus       305 ~~kI~VIG~-G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~  381 (721)
                      |.||+|||+ |..|.-+.+.|.++- +++..+-.+...-+    .+......+...            ..+. ..+.+ .
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~----~i~~~~p~~~~~------------~~~~-~~~~~~~   63 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGK----KLEEIFPSTLEN------------SILS-EFDPEKV   63 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTS----BHHHHCGGGCCC------------CBCB-CCCHHHH
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCC----cccccCchhhcc------------cccc-ccCHhHh
Confidence            579999997 999999999998864 36655533321111    111111111100            0111 12222 2


Q ss_pred             cCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCCCHH
Q 004972          382 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN  426 (721)
Q Consensus       382 l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~~i~  426 (721)
                      ..++|+|+.|+|.....  ++.    +. ..++.|+++++.....
T Consensus        64 ~~~~dvvf~a~p~~~s~--~~~----~~-~~~~~VIDlSadfRl~  101 (176)
T d1vkna1          64 SKNCDVLFTALPAGASY--DLV----RE-LKGVKIIDLGADFRFD  101 (176)
T ss_dssp             HHHCSEEEECCSTTHHH--HHH----TT-CCSCEEEESSSTTTCS
T ss_pred             ccccceEEEccccHHHH--HHH----Hh-hccceEEecCcccccc
Confidence            36799999999965542  332    22 2567888999987664

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=91.37  E-value=0.21  Score=44.71  Aligned_cols=41  Identities=15%  Similarity=0.191  Sum_probs=36.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK  346 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~  346 (721)
                      ..|.|+|+|.+|....+.+...|. +|++.|+++++++.+++
T Consensus        31 ~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~   72 (176)
T d1d1ta2          31 STCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMA   72 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHh
Confidence            479999999999999999999995 89999999999887643

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.16  E-value=0.043  Score=51.51  Aligned_cols=33  Identities=21%  Similarity=0.205  Sum_probs=29.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHHC--CCceEEEeCCHH
Q 004972          307 KVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSE  339 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~  339 (721)
                      ||+|||+|.-|.+-|..|+++  |++|+++|..+.
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            899999999999999999775  789999998864

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.05  E-value=0.14  Score=47.36  Aligned_cols=39  Identities=15%  Similarity=0.002  Sum_probs=31.5

Q ss_pred             CceeEEEEcC-CCCcHHHHHHHHHCCCceEE--EeCCHHHHH
Q 004972          304 GVRKVAVIGG-GLMGSGIATAHILNNIYVVL--KEVNSEYLL  342 (721)
Q Consensus       304 ~~~kI~VIG~-G~mG~~iA~~la~~G~~V~l--~d~~~~~~~  342 (721)
                      .|++|.|.|+ |.+|+.++..|++.|++|.+  ..|+++...
T Consensus         2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~   43 (252)
T d2q46a1           2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKE   43 (252)
T ss_dssp             SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHH
Confidence            4789999995 99999999999999987555  556776533

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.94  E-value=0.46  Score=45.02  Aligned_cols=40  Identities=33%  Similarity=0.295  Sum_probs=33.3

Q ss_pred             eEE-EEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHH
Q 004972          307 KVA-VIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  346 (721)
Q Consensus       307 kI~-VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  346 (721)
                      |++ |.|+ +-+|.++|..|++.|.+|++.|++++.++...+
T Consensus         4 KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~   45 (254)
T d2gdza1           4 KVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKA   45 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            444 5576 669999999999999999999999998777543

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=90.75  E-value=0.18  Score=43.22  Aligned_cols=82  Identities=12%  Similarity=0.009  Sum_probs=60.1

Q ss_pred             eeEEEEcC----CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccc
Q 004972          306 RKVAVIGG----GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE  381 (721)
Q Consensus       306 ~kI~VIG~----G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  381 (721)
                      ++|+|||+    +..|..+...|.+.|++++.+..++..-                           .........++.+
T Consensus        14 ksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~---------------------------~i~g~~~~~~l~~   66 (136)
T d1iuka_          14 KTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGE---------------------------ELFGEEAVASLLD   66 (136)
T ss_dssp             CEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTS---------------------------EETTEECBSSGGG
T ss_pred             CeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccc---------------------------eeeceecccchhh
Confidence            57999998    7889999999999999999999865320                           0112444555655


Q ss_pred             c-CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEE
Q 004972          382 F-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA  417 (721)
Q Consensus       382 l-~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~  417 (721)
                      + ...|+|+.++|  .+...+++++.... ...++++
T Consensus        67 i~~~iD~v~v~~p--~~~v~~~v~~~~~~-g~k~i~~  100 (136)
T d1iuka_          67 LKEPVDILDVFRP--PSALMDHLPEVLAL-RPGLVWL  100 (136)
T ss_dssp             CCSCCSEEEECSC--HHHHTTTHHHHHHH-CCSCEEE
T ss_pred             ccCCCceEEEecc--HHHHHHHHHHHHhh-CCCeEEE
Confidence            5 55799999998  77777888887665 3445554

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.45  E-value=0.59  Score=44.38  Aligned_cols=41  Identities=20%  Similarity=0.157  Sum_probs=34.8

Q ss_pred             eEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHH
Q 004972          307 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT  347 (721)
Q Consensus       307 kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~  347 (721)
                      .+-|.|+ +-+|.++|..|++.|+.|+++++++++++.+.+.
T Consensus        12 v~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~   53 (257)
T d1xg5a_          12 LALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAE   53 (257)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            4556675 7899999999999999999999999988876543

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=90.33  E-value=0.53  Score=45.10  Aligned_cols=41  Identities=20%  Similarity=0.171  Sum_probs=34.3

Q ss_pred             eEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHH
Q 004972          307 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT  347 (721)
Q Consensus       307 kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~  347 (721)
                      ++-|.|+ +-+|.++|..|++.|.+|++.|++++.++...+.
T Consensus         7 ~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~   48 (272)
T d1xkqa_           7 TVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQI   48 (272)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             EEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            4555575 6799999999999999999999999988876543

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=90.20  E-value=0.23  Score=44.31  Aligned_cols=35  Identities=23%  Similarity=0.418  Sum_probs=26.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCC-CceE-EEeCCHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNN-IYVV-LKEVNSEY  340 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G-~~V~-l~d~~~~~  340 (721)
                      .||||.|.|.+|..+.+.+.... ++|+ +.|.++..
T Consensus         3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~   39 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDF   39 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSH
T ss_pred             EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChH
Confidence            48999999999999999887654 5655 55565543

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.16  E-value=0.55  Score=44.26  Aligned_cols=39  Identities=23%  Similarity=0.163  Sum_probs=32.6

Q ss_pred             eEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 004972          307 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  345 (721)
Q Consensus       307 kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  345 (721)
                      .+-|-|+ +-+|.++|..|++.|++|++.|++++.++...
T Consensus         8 ~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~   47 (244)
T d1nffa_           8 VALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMA   47 (244)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            3455576 66999999999999999999999998876653

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=90.11  E-value=0.78  Score=43.52  Aligned_cols=42  Identities=21%  Similarity=0.132  Sum_probs=35.0

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHH
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT  347 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~  347 (721)
                      +.+-|.|+ +-+|.++|..|++.|++|++.|++++.++...+.
T Consensus         9 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~   51 (259)
T d2ae2a_           9 CTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQ   51 (259)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            34556677 5699999999999999999999999998876543

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=90.10  E-value=0.58  Score=39.11  Aligned_cols=37  Identities=14%  Similarity=-0.029  Sum_probs=31.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG  344 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  344 (721)
                      +.|-|+|.|.+|..++..|  .|++|+++|.+++..+..
T Consensus         1 kHivI~G~g~~g~~l~~~L--~~~~i~vi~~d~~~~~~~   37 (129)
T d2fy8a1           1 RHVVICGWSESTLECLREL--RGSEVFVLAEDENVRKKV   37 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTS--CGGGEEEEESCTTHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHH--cCCCCEEEEcchHHHHHH
Confidence            3588999999999999988  477899999999987654

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=89.82  E-value=0.76  Score=43.59  Aligned_cols=40  Identities=25%  Similarity=0.237  Sum_probs=33.8

Q ss_pred             eEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHH
Q 004972          307 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  346 (721)
Q Consensus       307 kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  346 (721)
                      .+-|-|+ +-+|.++|..|++.|.+|++.|++++.++...+
T Consensus         6 ~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~   46 (258)
T d1iy8a_           6 VVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKA   46 (258)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            4556676 569999999999999999999999998877644

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.72  E-value=0.075  Score=52.61  Aligned_cols=31  Identities=32%  Similarity=0.463  Sum_probs=29.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHCCCceEEEeCCH
Q 004972          308 VAVIGGGLMGSGIATAHILNNIYVVLKEVNS  338 (721)
Q Consensus       308 I~VIG~G~mG~~iA~~la~~G~~V~l~d~~~  338 (721)
                      |+|||+|.-|.+.|..|+++|++|+++|.+.
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARD   32 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            8999999999999999999999999999764

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=89.60  E-value=0.21  Score=44.58  Aligned_cols=40  Identities=18%  Similarity=0.214  Sum_probs=35.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI  345 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~  345 (721)
                      .+|.|+|+|-+|...++.++..|. .|+..|+++++.+.+.
T Consensus        30 dtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~   70 (176)
T d2jhfa2          30 STCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAK   70 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHH
Confidence            479999999999999999998885 8999999999977653

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=89.58  E-value=0.79  Score=42.95  Aligned_cols=39  Identities=13%  Similarity=0.184  Sum_probs=32.9

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG  344 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  344 (721)
                      +++-|.|+ +-+|.++|..|++.|++|++.+++.+.++..
T Consensus         6 K~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~   45 (241)
T d2a4ka1           6 KTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEA   45 (241)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            35667787 5599999999999999999999999876653

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=89.36  E-value=0.4  Score=45.49  Aligned_cols=39  Identities=21%  Similarity=0.249  Sum_probs=32.4

Q ss_pred             eEEEE-cC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 004972          307 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  345 (721)
Q Consensus       307 kI~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  345 (721)
                      |++|| |+ +-+|.++|..|++.|++|++.|++++.++...
T Consensus         7 K~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~   47 (253)
T d1hxha_           7 KVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLA   47 (253)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            45544 75 56999999999999999999999998877653

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=89.28  E-value=0.24  Score=47.36  Aligned_cols=41  Identities=24%  Similarity=0.245  Sum_probs=34.4

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHH
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  346 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  346 (721)
                      +.+-|.|+ +-+|.++|..|++.|+.|++.|++++.++...+
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~   47 (260)
T d1zema1           6 KVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEA   47 (260)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            34556687 569999999999999999999999998877644

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.23  E-value=0.056  Score=50.65  Aligned_cols=34  Identities=18%  Similarity=0.094  Sum_probs=30.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-------ceEEEeCCHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-------YVVLKEVNSE  339 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-------~V~l~d~~~~  339 (721)
                      .||+|||+|.-|.+-|..|+++||       +|++||..+.
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~   43 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT   43 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence            489999999999999999999884       7999998764

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=89.10  E-value=0.095  Score=49.51  Aligned_cols=33  Identities=30%  Similarity=0.349  Sum_probs=30.6

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHH
Q 004972          307 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  339 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~  339 (721)
                      -|.|||+|.-|...|..|+++|++|+++|+++.
T Consensus         4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~~   36 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK   36 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            389999999999999999999999999998754

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.92  E-value=0.63  Score=43.98  Aligned_cols=39  Identities=26%  Similarity=0.274  Sum_probs=33.3

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG  344 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  344 (721)
                      |.+-|.|+ +-+|.++|..|++.|.+|++.|++++.++..
T Consensus         7 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~   46 (250)
T d1ydea1           7 KVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRAL   46 (250)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            34666676 7899999999999999999999999887664

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=88.88  E-value=0.81  Score=40.30  Aligned_cols=40  Identities=23%  Similarity=0.172  Sum_probs=33.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCC-CceEEEeCCHHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGI  345 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~  345 (721)
                      .+|.|+|+|.+|...++.+...| ..|++.|+++++++.++
T Consensus        34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~   74 (172)
T d1h2ba2          34 AYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAE   74 (172)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHH
T ss_pred             CEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHh
Confidence            47999999999999888887666 47889999999877653

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=88.76  E-value=0.9  Score=43.45  Aligned_cols=41  Identities=17%  Similarity=0.191  Sum_probs=34.0

Q ss_pred             eEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHH
Q 004972          307 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT  347 (721)
Q Consensus       307 kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~  347 (721)
                      ++-|-|+ +-+|.++|..|++.|.+|++.|++++.++...+.
T Consensus         6 ~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~   47 (274)
T d1xhla_           6 SVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQ   47 (274)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            4555565 6699999999999999999999999988876543

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=88.75  E-value=0.094  Score=46.49  Aligned_cols=33  Identities=42%  Similarity=0.483  Sum_probs=29.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC--ceEEEeCCH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNS  338 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~  338 (721)
                      +||.|||+|..|..+|..|.+.|.  +|+++++++
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            589999999999999999999875  789999876

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=88.70  E-value=0.73  Score=43.94  Aligned_cols=39  Identities=21%  Similarity=0.256  Sum_probs=32.7

Q ss_pred             eEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 004972          307 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  345 (721)
Q Consensus       307 kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  345 (721)
                      .+-|.|+ +-+|.++|..|++.|.+|++.|++++.+++..
T Consensus         8 valITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~   47 (268)
T d2bgka1           8 VAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVC   47 (268)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            3445575 66999999999999999999999999877654

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=88.66  E-value=0.14  Score=49.27  Aligned_cols=35  Identities=23%  Similarity=0.278  Sum_probs=32.1

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHH
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEY  340 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~  340 (721)
                      +||.|+|+ |.+|+.++..|.+.|++|++++|+...
T Consensus         4 kKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~   39 (307)
T d1qyca_           4 SRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA   39 (307)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence            68999997 999999999999999999999997554

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=88.48  E-value=0.35  Score=43.49  Aligned_cols=30  Identities=20%  Similarity=0.341  Sum_probs=24.4

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCC-CceEEEe
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNN-IYVVLKE  335 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G-~~V~l~d  335 (721)
                      -||||||+ |+.|.-+.+.|.++- +++..+.
T Consensus         6 ikVaIlGATGyvG~elirLL~~HP~~ei~~l~   37 (183)
T d2cvoa1           6 VRIAVLGASGYTGAEIVRLLANHPQFRIKVMT   37 (183)
T ss_dssp             EEEEEESCSSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred             cEEEEECcccHHHHHHHHHHHhCCCceEEEEe
Confidence            48999997 999999999998863 4666554

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=88.36  E-value=0.59  Score=44.31  Aligned_cols=37  Identities=19%  Similarity=0.154  Sum_probs=31.7

Q ss_pred             eeEEEEcC-CC--CcHHHHHHHHHCCCceEEEeCCHHHHH
Q 004972          306 RKVAVIGG-GL--MGSGIATAHILNNIYVVLKEVNSEYLL  342 (721)
Q Consensus       306 ~kI~VIG~-G~--mG~~iA~~la~~G~~V~l~d~~~~~~~  342 (721)
                      ++|-|.|+ |.  ||.++|+.|++.|.+|++.+++.+...
T Consensus         7 K~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~   46 (268)
T d2h7ma1           7 KRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLI   46 (268)
T ss_dssp             CEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHH
Confidence            56788885 65  999999999999999999999987643

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=88.35  E-value=0.86  Score=43.10  Aligned_cols=39  Identities=26%  Similarity=0.284  Sum_probs=33.5

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG  344 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  344 (721)
                      +++-|.|+ +-+|.++|..|++.|++|++.|++++.++..
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~   45 (254)
T d1hdca_           6 KTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAAT   45 (254)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            45677787 5699999999999999999999999887654

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=88.24  E-value=0.11  Score=49.42  Aligned_cols=32  Identities=16%  Similarity=0.305  Sum_probs=29.6

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN  337 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~  337 (721)
                      .||.|||+|.+|+.+|..|++.|. +++++|.+
T Consensus        31 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          31 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            489999999999999999999998 89999965

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=88.20  E-value=0.32  Score=46.18  Aligned_cols=42  Identities=29%  Similarity=0.259  Sum_probs=35.3

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHH
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT  347 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~  347 (721)
                      +.+-|.|+ +-+|.++|..|++.|++|++.|++++.+++..+.
T Consensus         6 K~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~   48 (251)
T d1vl8a_           6 RVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQK   48 (251)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            45667787 5699999999999999999999999988776543

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=88.19  E-value=0.95  Score=42.77  Aligned_cols=41  Identities=24%  Similarity=0.346  Sum_probs=34.0

Q ss_pred             eEEEE-cC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHH
Q 004972          307 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT  347 (721)
Q Consensus       307 kI~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~  347 (721)
                      |+++| |+ +-+|.++|..|++.|++|++.+++++.+++..+.
T Consensus        12 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~   54 (255)
T d1fmca_          12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDE   54 (255)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            55555 54 6799999999999999999999999988776543

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=88.17  E-value=0.92  Score=42.92  Aligned_cols=91  Identities=15%  Similarity=0.126  Sum_probs=61.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc---ccc
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY---SEF  382 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~---~~l  382 (721)
                      ++|.=+|+|. | .++..+++.|.+|+.+|++++.++.+++.++.       .+ +.        .++. ..+.   ..-
T Consensus       122 ~~VLDiGcGs-G-~l~i~aa~~g~~V~gvDis~~av~~A~~na~~-------n~-~~--------~~~~-~~d~~~~~~~  182 (254)
T d2nxca1         122 DKVLDLGTGS-G-VLAIAAEKLGGKALGVDIDPMVLPQAEANAKR-------NG-VR--------PRFL-EGSLEAALPF  182 (254)
T ss_dssp             CEEEEETCTT-S-HHHHHHHHTTCEEEEEESCGGGHHHHHHHHHH-------TT-CC--------CEEE-ESCHHHHGGG
T ss_pred             CEEEEcccch-h-HHHHHHHhcCCEEEEEECChHHHHHHHHHHHH-------cC-Cc--------eeEE-eccccccccc
Confidence            4789999998 4 35567788899999999999999988654322       11 11        0111 1121   112


Q ss_pred             CCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEE
Q 004972          383 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA  417 (721)
Q Consensus       383 ~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~  417 (721)
                      ...|+|+-.+.  ......+++++...++|+..++
T Consensus       183 ~~fD~V~ani~--~~~l~~l~~~~~~~LkpGG~li  215 (254)
T d2nxca1         183 GPFDLLVANLY--AELHAALAPRYREALVPGGRAL  215 (254)
T ss_dssp             CCEEEEEEECC--HHHHHHHHHHHHHHEEEEEEEE
T ss_pred             cccchhhhccc--cccHHHHHHHHHHhcCCCcEEE
Confidence            56899987665  6667788888888888877665

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=88.12  E-value=0.17  Score=49.02  Aligned_cols=35  Identities=23%  Similarity=0.269  Sum_probs=31.5

Q ss_pred             ceeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHH
Q 004972          305 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSE  339 (721)
Q Consensus       305 ~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~  339 (721)
                      -+||.|+|+ |.+|+.++..|.+.|++|++.+|++.
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   38 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV   38 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence            368999996 99999999999999999999998754

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=88.01  E-value=1.6  Score=40.77  Aligned_cols=39  Identities=13%  Similarity=0.156  Sum_probs=33.0

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG  344 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  344 (721)
                      +++-|.|+ +-+|.++|..|++.|++|++.|++++.++..
T Consensus         6 K~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~   45 (242)
T d1ulsa_           6 KAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREA   45 (242)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            45566676 5699999999999999999999999887664

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.98  E-value=0.26  Score=46.62  Aligned_cols=40  Identities=25%  Similarity=0.195  Sum_probs=34.4

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  345 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  345 (721)
                      ++|-|.|+ +-+|.++|..|++.|++|++.|++++.++...
T Consensus         8 K~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~   48 (244)
T d1pr9a_           8 RRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLV   48 (244)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHH
Confidence            46777787 67999999999999999999999998877653

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=87.92  E-value=0.096  Score=52.07  Aligned_cols=34  Identities=21%  Similarity=0.214  Sum_probs=30.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHH-----HCCCceEEEeCCHH
Q 004972          306 RKVAVIGGGLMGSGIATAHI-----LNNIYVVLKEVNSE  339 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la-----~~G~~V~l~d~~~~  339 (721)
                      --|.|||+|..|..+|..|+     ++|++|+++|+++.
T Consensus         8 yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~   46 (360)
T d1pn0a1           8 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST   46 (360)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCC
Confidence            45999999999999999996     57999999998653

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=87.91  E-value=0.99  Score=42.22  Aligned_cols=41  Identities=20%  Similarity=0.147  Sum_probs=33.4

Q ss_pred             eeEE-EEcC-CCCcHHHHHHHHHCCCc-------eEEEeCCHHHHHHHHH
Q 004972          306 RKVA-VIGG-GLMGSGIATAHILNNIY-------VVLKEVNSEYLLKGIK  346 (721)
Q Consensus       306 ~kI~-VIG~-G~mG~~iA~~la~~G~~-------V~l~d~~~~~~~~~~~  346 (721)
                      |+|. |-|+ +-+|.++|..|++.|++       |++++++++.++...+
T Consensus         1 K~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~   50 (240)
T d2bd0a1           1 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISL   50 (240)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHH
Confidence            4565 4576 56899999999999987       9999999998877643

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=87.79  E-value=1.9  Score=40.48  Aligned_cols=38  Identities=21%  Similarity=0.131  Sum_probs=31.0

Q ss_pred             eeEEEEcCC---CCcHHHHHHHHHCCCceEEEeCCHHHHHH
Q 004972          306 RKVAVIGGG---LMGSGIATAHILNNIYVVLKEVNSEYLLK  343 (721)
Q Consensus       306 ~kI~VIG~G---~mG~~iA~~la~~G~~V~l~d~~~~~~~~  343 (721)
                      +++-|.|++   -+|.++|..|++.|++|++.+++++..+.
T Consensus         9 K~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~   49 (256)
T d1ulua_           9 KKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPE   49 (256)
T ss_dssp             CEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHH
T ss_pred             CEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHH
Confidence            456777864   49999999999999999999998765443

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.75  E-value=0.36  Score=42.83  Aligned_cols=32  Identities=25%  Similarity=0.301  Sum_probs=28.5

Q ss_pred             eeEEEEcCC-CCcHHHHHHHHHCCCceEEEeCC
Q 004972          306 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVN  337 (721)
Q Consensus       306 ~kI~VIG~G-~mG~~iA~~la~~G~~V~l~d~~  337 (721)
                      ++|.|||-+ ..|.++|..|++.|..|+.++.+
T Consensus        30 K~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~   62 (171)
T d1edza1          30 KKCIVINRSEIVGRPLAALLANDGATVYSVDVN   62 (171)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             CEEEEECCccccHHHHHHHHHHCCCEEEEeccc
Confidence            589999976 56999999999999999999865

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.75  E-value=0.65  Score=44.43  Aligned_cols=43  Identities=19%  Similarity=0.131  Sum_probs=35.4

Q ss_pred             eeEEEE--cCCCCcHHHHHHHHHC-CCceEEEeCCHHHHHHHHHHH
Q 004972          306 RKVAVI--GGGLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTI  348 (721)
Q Consensus       306 ~kI~VI--G~G~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~~~~~  348 (721)
                      ++|+||  |.+-+|.++|..|++. |..|++.+|++++++.+.+.+
T Consensus         3 ~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l   48 (275)
T d1wmaa1           3 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQL   48 (275)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHH
Confidence            479888  5577899999999875 899999999999988765543

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=87.67  E-value=0.15  Score=49.94  Aligned_cols=34  Identities=21%  Similarity=0.110  Sum_probs=31.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  339 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~  339 (721)
                      -.|+|||+|.-|..+|..|.+.|++|+++|.+++
T Consensus         8 ~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~   41 (298)
T d1w4xa1           8 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGD   41 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence            4699999999999999999999999999998765

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.63  E-value=0.17  Score=47.93  Aligned_cols=39  Identities=21%  Similarity=0.141  Sum_probs=32.6

Q ss_pred             eEE-EEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 004972          307 KVA-VIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  345 (721)
Q Consensus       307 kI~-VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  345 (721)
                      ||+ |.|+ +-+|.++|..|++.|++|++.|++++.++...
T Consensus         6 KvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~   46 (248)
T d2o23a1           6 LVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQA   46 (248)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHH
Confidence            455 6676 66999999999999999999999998876643

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=87.53  E-value=1.3  Score=41.82  Aligned_cols=39  Identities=36%  Similarity=0.377  Sum_probs=30.7

Q ss_pred             eEEEE-cC-CCCcHHHHHHHHHCCCceEEEeCC-HHHHHHHH
Q 004972          307 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVN-SEYLLKGI  345 (721)
Q Consensus       307 kI~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~-~~~~~~~~  345 (721)
                      |+++| |+ +-+|.++|..|++.|++|++.+++ ++.++...
T Consensus         5 K~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~   46 (260)
T d1x1ta1           5 KVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVR   46 (260)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHH
Confidence            55555 55 669999999999999999999997 45555543

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=87.46  E-value=1.1  Score=41.96  Aligned_cols=38  Identities=18%  Similarity=0.194  Sum_probs=30.0

Q ss_pred             eeEEEEcCCC---CcHHHHHHHHHCCCceEEEeCCHHHHHH
Q 004972          306 RKVAVIGGGL---MGSGIATAHILNNIYVVLKEVNSEYLLK  343 (721)
Q Consensus       306 ~kI~VIG~G~---mG~~iA~~la~~G~~V~l~d~~~~~~~~  343 (721)
                      ++|-|.|++.   +|.++|..|++.|++|++.+++++..+.
T Consensus         6 K~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~   46 (258)
T d1qsga_           6 KRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGR   46 (258)
T ss_dssp             CEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHH
T ss_pred             CEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            4566777643   6689999999999999999999765444

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=87.42  E-value=1.3  Score=41.94  Aligned_cols=35  Identities=17%  Similarity=0.257  Sum_probs=30.0

Q ss_pred             eeEEEEcC-C--CCcHHHHHHHHHCCCceEEEeCCHHH
Q 004972          306 RKVAVIGG-G--LMGSGIATAHILNNIYVVLKEVNSEY  340 (721)
Q Consensus       306 ~kI~VIG~-G--~mG~~iA~~la~~G~~V~l~d~~~~~  340 (721)
                      +++-|.|+ |  -+|.++|..|++.|++|++.+++++.
T Consensus         6 K~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~   43 (274)
T d2pd4a1           6 KKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESL   43 (274)
T ss_dssp             CEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTT
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            46778886 5  49999999999999999999999653

>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=87.35  E-value=4.1  Score=39.08  Aligned_cols=155  Identities=11%  Similarity=0.102  Sum_probs=90.4

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCCCCchhhhhccCCCcccccchHHHHHHHHHHhhCCCcEEEEE
Q 004972           26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV  105 (721)
Q Consensus        26 Nal~~~~~~~l~~~l~~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~Iaav  105 (721)
                      -+++.+-.+...+.++.++.. .+-+|.|.=. ..|-.|-+-+.          ....+...+++ .++.++.+|.|+.|
T Consensus        97 G~l~~~~a~K~~rfi~lc~~~-~iPlv~l~D~-pGf~~g~~~E~----------~g~~r~ga~~~-~a~~~~~VP~isvi  163 (299)
T d1pixa3          97 GKLYRQGLVKMNEFVTLCARD-RLPIVWIQDT-TGIDVGNDAEK----------AELLGLGQSLI-YSIQTSHIPQFEIT  163 (299)
T ss_dssp             TEECHHHHHHHHHHHHHHHHT-TCCEEEEECC-CEECCSHHHHH----------TTHHHHHHHHH-HHHHTCCCCEEEEE
T ss_pred             CccCHHHHHHHHHHHHHHHHc-CCeEEEEEeC-CCcccchHHHh----------hhHHHHHHHHH-HHHHhhcceeEEEE
Confidence            457888888999988888764 3445555422 22555543221          12334555666 67899999999999


Q ss_pred             CCcccccchHhhh----hcCEEE--eeCCceEeCcccccCcccc----ccccccccCH------------HHHHHHHH-c
Q 004972          106 EGLALGGGLELAM----GCHARI--AAPKTQLGLPELTLGVIPG----TQRLPRLVGL------------SKAIEMML-L  162 (721)
Q Consensus       106 ~G~a~GgG~~lal----acD~ri--a~~~a~~~~pe~~~Gl~P~----~~~l~r~~G~------------~~a~~l~l-t  162 (721)
                      -|.++|||.....    ..|+++  +.+++.+       |.+++    ...+.+.+..            ..-.+++- .
T Consensus       164 ~r~~~G~a~~am~g~~~~~~~~~~~awP~aei-------gvMg~E~aa~vl~~~el~~~~~~~~~~~e~~e~~~~~~~~~  236 (299)
T d1pixa3         164 LRKGTAAAHYVLGGPQGNDTNAFSIGTAATEI-------AVMNGETAATAMYSRRLAKDRKAGKDLQPTIDKMNNLIQAF  236 (299)
T ss_dssp             CSEEETTHHHHTTCTTCTTTEEEEEECTTCEE-------ESSCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred             ecccccccccccccCccCcccceecCCCcccc-------ccccchhhheeehhhhhhhhhhhhhhhhHHHHHHHHHHHHH
Confidence            9999998854322    234333  3444444       44443    1111111100            00011110 0


Q ss_pred             CCCcCHHHHHHcCCccEEcCCchHHHHHHHHHHHHHhc
Q 004972          163 SKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR  200 (721)
Q Consensus       163 g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~a~~  200 (721)
                      -+..++..|.+.|+||.|+++.+.......+.+.+.++
T Consensus       237 ~~~~sp~~aAs~~~iD~IIDP~dTR~~L~~~Le~~~~~  274 (299)
T d1pixa3         237 YTKSRPKVCAELGLVDEIVDMNKIRGYVEAFTEAAYQN  274 (299)
T ss_dssp             HHTTSHHHHHHHTSSSEECCTTTHHHHHHHHHHHHTTS
T ss_pred             HHhcCHHHHHHhCCcCeeECHHHHHHHHHHHHHHHHhC
Confidence            12347778889999999999988777766666554443

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.27  E-value=0.57  Score=40.37  Aligned_cols=31  Identities=19%  Similarity=0.299  Sum_probs=29.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEV  336 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~  336 (721)
                      ++|.|||+|.+|..-+..|.+.|-+|++++.
T Consensus        14 krvLViGgG~va~~ka~~Ll~~GA~VtVvap   44 (150)
T d1kyqa1          14 KRILLIGGGEVGLTRLYKLMPTGCKLTLVSP   44 (150)
T ss_dssp             CEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            6899999999999999999999999999965

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.27  E-value=0.33  Score=46.20  Aligned_cols=43  Identities=14%  Similarity=0.154  Sum_probs=35.5

Q ss_pred             eeEEEE-cC-CCCcHHHHHHHHH---CCCceEEEeCCHHHHHHHHHHH
Q 004972          306 RKVAVI-GG-GLMGSGIATAHIL---NNIYVVLKEVNSEYLLKGIKTI  348 (721)
Q Consensus       306 ~kI~VI-G~-G~mG~~iA~~la~---~G~~V~l~d~~~~~~~~~~~~~  348 (721)
                      .||+|| |+ +-+|.++|..|++   .|+.|++.+++++.++...+.+
T Consensus         6 gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l   53 (259)
T d1oaaa_           6 CAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEEL   53 (259)
T ss_dssp             SEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHH
Confidence            488888 65 5689999999986   6999999999999988765543

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=86.99  E-value=1.1  Score=42.04  Aligned_cols=39  Identities=31%  Similarity=0.312  Sum_probs=32.5

Q ss_pred             eEE-EEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 004972          307 KVA-VIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  345 (721)
Q Consensus       307 kI~-VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  345 (721)
                      |++ |.|+ +-+|.++|..|++.|++|++.+++++.++.+.
T Consensus         7 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~   47 (251)
T d1zk4a1           7 KVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAA   47 (251)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            455 4465 66999999999999999999999998877653

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=86.99  E-value=0.84  Score=43.25  Aligned_cols=41  Identities=15%  Similarity=0.146  Sum_probs=33.5

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHH
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK  346 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~  346 (721)
                      |++-|.|+ +-+|.++|..|++.|++|++.+++++.+++..+
T Consensus        10 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~   51 (260)
T d1h5qa_          10 KTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTE   51 (260)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            34556676 559999999999999999999999988776544

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=86.96  E-value=1.4  Score=40.86  Aligned_cols=92  Identities=18%  Similarity=0.112  Sum_probs=60.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCcee-ccCc---cc
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDY---SE  381 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~---~~  381 (721)
                      ++|.=||+|+ | .++..|++.|.+|+++|.+++.++.++++...       .+           .++.+ ..+.   ..
T Consensus        43 ~~iLDiGcGt-G-~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~-------~~-----------~~i~~~~~d~~~l~~  102 (251)
T d1wzna1          43 RRVLDLACGT-G-IPTLELAERGYEVVGLDLHEEMLRVARRKAKE-------RN-----------LKIEFLQGDVLEIAF  102 (251)
T ss_dssp             CEEEEETCTT-C-HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-------TT-----------CCCEEEESCGGGCCC
T ss_pred             CEEEEeCCCC-C-ccchhhcccceEEEEEeecccccccccccccc-------cc-----------ccchheehhhhhccc
Confidence            5899999998 4 45667889999999999999998887654321       11           01211 1122   11


Q ss_pred             cCCCCEEEEcc----cCChHHHHHHHHHHHhhCCCCeEEE
Q 004972          382 FKDVDMVIEAV----IESVPLKQKIFSELEKACPPHCILA  417 (721)
Q Consensus       382 l~~aDlVIeav----pe~~~~k~~v~~~l~~~~~~~~ii~  417 (721)
                      -...|+|+.+-    .-+..-.+.+++++..+++|+.+++
T Consensus       103 ~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~li  142 (251)
T d1wzna1         103 KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFI  142 (251)
T ss_dssp             CSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             ccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEE
Confidence            14568887542    1123445678999999999887664

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=86.79  E-value=1.1  Score=42.36  Aligned_cols=40  Identities=18%  Similarity=0.230  Sum_probs=33.8

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  345 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  345 (721)
                      +++-|.|+ +-+|.++|..|++.|++|++.|++++.++...
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~   46 (256)
T d1k2wa_           6 KTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATA   46 (256)
T ss_dssp             EEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            34566676 77999999999999999999999998877653

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.75  E-value=0.29  Score=46.76  Aligned_cols=42  Identities=19%  Similarity=0.128  Sum_probs=34.8

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHH
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT  347 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~  347 (721)
                      +++-|.|+ +-+|.++|..|++.|.+|++.+++++.++...+.
T Consensus         9 K~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~   51 (259)
T d1xq1a_           9 KTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSK   51 (259)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            35566676 5699999999999999999999999988876543

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=86.48  E-value=2.3  Score=40.27  Aligned_cols=39  Identities=21%  Similarity=0.120  Sum_probs=30.4

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCH-HHHHHH
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNS-EYLLKG  344 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~-~~~~~~  344 (721)
                      +++-|.|+ +-+|.+||..|++.|++|++.+++. +.++..
T Consensus        19 K~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~   59 (272)
T d1g0oa_          19 KVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEV   59 (272)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHH
Confidence            45556674 8899999999999999999999874 444443

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.44  E-value=0.15  Score=46.14  Aligned_cols=34  Identities=15%  Similarity=0.109  Sum_probs=30.8

Q ss_pred             CceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCC
Q 004972          304 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVN  337 (721)
Q Consensus       304 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~  337 (721)
                      ..++|.|||+|.-|.+-|..+++.|.+|+++|..
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~   37 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGW   37 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCS
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEee
Confidence            3478999999999999999999999999999854

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=86.36  E-value=0.83  Score=42.87  Aligned_cols=39  Identities=18%  Similarity=0.141  Sum_probs=32.9

Q ss_pred             eEEEE-cC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 004972          307 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  345 (721)
Q Consensus       307 kI~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  345 (721)
                      |++|| |+ +-+|.++|..|++.|++|++.|++++.++...
T Consensus         5 K~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~   45 (243)
T d1q7ba_           5 KIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAIS   45 (243)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence            45555 75 67999999999999999999999998877653

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.28  E-value=0.24  Score=46.95  Aligned_cols=37  Identities=22%  Similarity=0.290  Sum_probs=31.8

Q ss_pred             eEEEE--cCCCCcHHHHHHHHHCCCceEEEeCCHHHHHH
Q 004972          307 KVAVI--GGGLMGSGIATAHILNNIYVVLKEVNSEYLLK  343 (721)
Q Consensus       307 kI~VI--G~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~  343 (721)
                      |+++|  |++-+|.++|+.|++.|++|++.|++++.++.
T Consensus         7 K~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~   45 (245)
T d2ag5a1           7 KVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQE   45 (245)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGG
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            56666  56899999999999999999999999887554

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=86.21  E-value=0.46  Score=41.98  Aligned_cols=40  Identities=15%  Similarity=0.221  Sum_probs=33.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI  345 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~  345 (721)
                      .+|.|+|+|-+|...++.+...|. .|+..|+++++.+.++
T Consensus        30 ~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak   70 (176)
T d2fzwa2          30 SVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAK   70 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH
T ss_pred             CEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHH
Confidence            479999999998888888888885 6888899998877653

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=85.85  E-value=0.26  Score=44.15  Aligned_cols=40  Identities=15%  Similarity=-0.086  Sum_probs=34.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT  347 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~  347 (721)
                      .+|-.||+|.=  ..+..|++.|++|+.+|.+++.++.+.++
T Consensus        22 ~rvLd~GCG~G--~~a~~la~~G~~V~gvD~S~~~i~~a~~~   61 (201)
T d1pjza_          22 ARVLVPLCGKS--QDMSWLSGQGYHVVGAELSEAAVERYFTE   61 (201)
T ss_dssp             CEEEETTTCCS--HHHHHHHHHCCEEEEEEECHHHHHHHHHH
T ss_pred             CEEEEecCcCC--HHHHHHHHcCCceEeecccHHHHHHHHHH
Confidence            48999999983  57778899999999999999999987654

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=85.80  E-value=0.19  Score=47.59  Aligned_cols=35  Identities=17%  Similarity=0.096  Sum_probs=32.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY  340 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~  340 (721)
                      ..|.|||+|.-|...|..++++|++|+++|.++..
T Consensus         5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~   39 (253)
T d2gqfa1           5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKI   39 (253)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            35999999999999999999999999999998654

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=85.60  E-value=0.15  Score=48.82  Aligned_cols=33  Identities=24%  Similarity=0.388  Sum_probs=30.4

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCH
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNS  338 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~  338 (721)
                      |||.|.|+ |.+|+.++..|.+.|++|+..|+++
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            47999997 9999999999999999999999864

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=85.55  E-value=0.68  Score=41.75  Aligned_cols=93  Identities=15%  Similarity=0.150  Sum_probs=59.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceec-cCcc---c
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDYS---E  381 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~---~  381 (721)
                      .+|.=||+|. |. .+..|++.|++|+.+|.+++.++.+......       .+          ..++.+. .|..   .
T Consensus        32 grvLDiGcG~-G~-~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~-------~~----------~~~~~~~~~d~~~~~~   92 (198)
T d2i6ga1          32 GRTLDLGCGN-GR-NSLYLAANGYDVTAWDKNPASMANLERIKAA-------EG----------LDNLQTDLVDLNTLTF   92 (198)
T ss_dssp             CEEEEETCTT-SH-HHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-------TT----------CTTEEEEECCTTTCCC
T ss_pred             CcEEEECCCC-CH-HHHHHHHHhhhhccccCcHHHHHHHHHHhhh-------cc----------ccchhhhheecccccc
Confidence            3799999993 43 6678889999999999999999887544321       11          1122221 1221   1


Q ss_pred             cCCCCEEEEccc-C--ChHHHHHHHHHHHhhCCCCeEEE
Q 004972          382 FKDVDMVIEAVI-E--SVPLKQKIFSELEKACPPHCILA  417 (721)
Q Consensus       382 l~~aDlVIeavp-e--~~~~k~~v~~~l~~~~~~~~ii~  417 (721)
                      -...|+|+.... +  +......+++++...++++.+++
T Consensus        93 ~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~  131 (198)
T d2i6ga1          93 DGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNL  131 (198)
T ss_dssp             CCCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEE
T ss_pred             cccccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEE
Confidence            134588874321 1  23445678899999888877554

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.23  E-value=0.45  Score=44.81  Aligned_cols=40  Identities=18%  Similarity=0.079  Sum_probs=33.7

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHHH
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI  345 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~  345 (721)
                      +++-|.|+ +-+|.++|..|++.|++|++.|++++.+++..
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~   46 (242)
T d1cyda_           6 LRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLA   46 (242)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            35667787 56999999999999999999999998876653

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=85.19  E-value=0.21  Score=49.75  Aligned_cols=36  Identities=19%  Similarity=0.225  Sum_probs=32.8

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHH
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYL  341 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~  341 (721)
                      ++|.|+|+ |.+|+.++..|.+.|++|++..|+++..
T Consensus         4 ktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~   40 (350)
T d1xgka_           4 KTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGL   40 (350)
T ss_dssp             CCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSH
T ss_pred             CEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchh
Confidence            68999996 9999999999999999999999987653

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=85.09  E-value=0.18  Score=44.24  Aligned_cols=32  Identities=22%  Similarity=0.270  Sum_probs=27.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  338 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~  338 (721)
                      .||.|||+|..|..+|..|++ +.+|+++++.+
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~   32 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEP   32 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSSS
T ss_pred             CeEEEECCcHHHHHHHHHHHc-CCCEEEEeccc
Confidence            489999999999999998864 77999998753

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=85.06  E-value=0.2  Score=45.43  Aligned_cols=33  Identities=18%  Similarity=0.109  Sum_probs=28.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHC--CCceEEEeCCH
Q 004972          306 RKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNS  338 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~  338 (721)
                      +||.|||+|..|..+|..|.+.  +.+|+++++++
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            5899999999999999999886  45899998764

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.67  E-value=0.3  Score=48.75  Aligned_cols=33  Identities=24%  Similarity=0.407  Sum_probs=29.8

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCH
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNS  338 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~  338 (721)
                      |||.|.|+ |.+|+.++..|.+.|++|+++|+..
T Consensus        16 MKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~   49 (363)
T d2c5aa1          16 LKISITGAGGFIASHIARRLKHEGHYVIASDWKK   49 (363)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence            47999995 9999999999999999999999753

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.35  E-value=0.76  Score=44.45  Aligned_cols=105  Identities=17%  Similarity=0.145  Sum_probs=64.7

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHC-CC-ceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCc---
Q 004972          305 VRKVAVIGGGLMGSGIATAHILN-NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY---  379 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~-G~-~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~---  379 (721)
                      .++|.|||+|.-|  ++..+.+. +. +|+++|++++.++.+++..... ....+..++          .+...+..   
T Consensus        81 pk~VLiiGgG~G~--~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~-~~~~~~~r~----------~i~~~Da~~~l  147 (290)
T d1xj5a_          81 PKKVLVIGGGDGG--VLREVARHASIEQIDMCEIDKMVVDVSKQFFPDV-AIGYEDPRV----------NLVIGDGVAFL  147 (290)
T ss_dssp             CCEEEEETCSSSH--HHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHH-HGGGGSTTE----------EEEESCHHHHH
T ss_pred             CcceEEecCCchH--HHHHHHhcccceeeEEecCCHHHHHHHHHhchhh-hccccCCCc----------EEEEccHHHHH
Confidence            4689999999754  44555554 43 7999999999998876543221 111222211          11111111   


Q ss_pred             ccc--CCCCEEEEcccCC-----hHHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972          380 SEF--KDVDMVIEAVIES-----VPLKQKIFSELEKACPPHCILATNTST  422 (721)
Q Consensus       380 ~~l--~~aDlVIeavpe~-----~~~k~~v~~~l~~~~~~~~ii~s~ts~  422 (721)
                      ...  +.-|+||.-+++.     .-..+++++.+.+.++++.+++.++.+
T Consensus       148 ~~~~~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s  197 (290)
T d1xj5a_         148 KNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAES  197 (290)
T ss_dssp             HTSCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             hhccccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCC
Confidence            111  2479888665532     224567889999999999999887654

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=84.16  E-value=1.7  Score=39.37  Aligned_cols=93  Identities=19%  Similarity=0.156  Sum_probs=58.5

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcccc---
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF---  382 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l---  382 (721)
                      .||-=||+|.  +.++..+++.|.+|+++|.+++.++.+.++..+       .+.          .......+...+   
T Consensus        39 ~~ILDiGcG~--G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~-------~~~----------~~~~~~~d~~~l~~~   99 (226)
T d1ve3a1          39 GKVLDLACGV--GGFSFLLEDYGFEVVGVDISEDMIRKAREYAKS-------RES----------NVEFIVGDARKLSFE   99 (226)
T ss_dssp             CEEEEETCTT--SHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-------TTC----------CCEEEECCTTSCCSC
T ss_pred             CEEEEECCCc--chhhhhHhhhhcccccccccccchhhhhhhhcc-------ccc----------ccccccccccccccc
Confidence            4799999998  446678889999999999999999887654322       110          001111222111   


Q ss_pred             -CCCCEEEEcc-cC--ChHHHHHHHHHHHhhCCCCeEEE
Q 004972          383 -KDVDMVIEAV-IE--SVPLKQKIFSELEKACPPHCILA  417 (721)
Q Consensus       383 -~~aDlVIeav-pe--~~~~k~~v~~~l~~~~~~~~ii~  417 (721)
                       ...|+|+..- -+  ...-...+++++..+++|+..++
T Consensus       100 ~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li  138 (226)
T d1ve3a1         100 DKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFI  138 (226)
T ss_dssp             TTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             CcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEE
Confidence             3457777322 11  12235578899999999987544

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=84.07  E-value=1.6  Score=41.52  Aligned_cols=39  Identities=18%  Similarity=0.290  Sum_probs=33.4

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG  344 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  344 (721)
                      ++|-|-|+ +-+|.++|..|++.|++|++.|++++.++..
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~   45 (276)
T d1bdba_           6 EAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAEL   45 (276)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            35666676 7899999999999999999999999887654

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=83.76  E-value=0.57  Score=42.46  Aligned_cols=40  Identities=25%  Similarity=0.311  Sum_probs=33.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCCHHHHHHHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI  345 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~  345 (721)
                      .+|.|+|+|.+|...++.+...|. .|++.|.++++++.+.
T Consensus        27 ~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~   67 (195)
T d1kola2          27 STVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAK   67 (195)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhh
Confidence            479999999999888887777776 7999999999988764

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=83.67  E-value=0.23  Score=44.16  Aligned_cols=34  Identities=21%  Similarity=0.266  Sum_probs=30.1

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHH
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  339 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~  339 (721)
                      ++|.|||+|..|..+|..|.+.|.+|+++.+.++
T Consensus         4 ~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~   37 (185)
T d1q1ra1           4 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDA   37 (185)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCceEEEEecCc
Confidence            5899999999999999999999999888766543

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=83.43  E-value=0.43  Score=46.83  Aligned_cols=103  Identities=14%  Similarity=0.163  Sum_probs=61.9

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHC--CCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceec-cCc-c
Q 004972          305 VRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY-S  380 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~  380 (721)
                      .++|.|||+|.-  +++..+++.  ..+|+++|++++.++.+.+.+........+..            +++.. .|. +
T Consensus        78 pk~VLiiG~G~G--~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~------------rv~i~~~Da~~  143 (312)
T d1uira_          78 PKRVLIVGGGEG--ATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDP------------RAVLVIDDARA  143 (312)
T ss_dssp             CCEEEEEECTTS--HHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCT------------TEEEEESCHHH
T ss_pred             cceEEEeCCCch--HHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCC------------ceEEEEchHHH
Confidence            368999999963  344444443  34899999999999887654322211111211            22211 111 1


Q ss_pred             ----ccCCCCEEEEcccCC-----h---HHHHHHHHHHHhhCCCCeEEEecCC
Q 004972          381 ----EFKDVDMVIEAVIES-----V---PLKQKIFSELEKACPPHCILATNTS  421 (721)
Q Consensus       381 ----~l~~aDlVIeavpe~-----~---~~k~~v~~~l~~~~~~~~ii~s~ts  421 (721)
                          .-+.-|+||.-+++.     +   -..+++++.+.+.++++.+++.+++
T Consensus       144 ~l~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~  196 (312)
T d1uira_         144 YLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG  196 (312)
T ss_dssp             HHHHCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             HhhhcCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecC
Confidence                113579998665421     1   1246788999999999998886543

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=83.40  E-value=0.27  Score=44.19  Aligned_cols=34  Identities=24%  Similarity=0.198  Sum_probs=30.8

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCH
Q 004972          305 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  338 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~  338 (721)
                      -++|.|||+|.-|.+-|..+++.|.+|+++++..
T Consensus         5 ~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~   38 (190)
T d1trba1           5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGME   38 (190)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEEeec
Confidence            4689999999999999999999999999998653

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=83.28  E-value=0.25  Score=43.95  Aligned_cols=39  Identities=21%  Similarity=0.200  Sum_probs=33.9

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHHH
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG  344 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~  344 (721)
                      ++|.|.|+ |.+|....+.+...|.+|+..+.++++.+.+
T Consensus        29 ~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~   68 (171)
T d1iz0a2          29 EKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALP   68 (171)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHH
T ss_pred             CEEEEEeccccchhhhhhhhcccccccccccccccccccc
Confidence            47999996 9999999888888999999999999887664

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=83.18  E-value=0.5  Score=44.15  Aligned_cols=38  Identities=21%  Similarity=0.236  Sum_probs=32.9

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHHHHH
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLK  343 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~  343 (721)
                      +++-|.|+ +-+|.++|..|++.|++|++.|++++.++.
T Consensus         5 K~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~   43 (234)
T d1o5ia_           5 KGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKR   43 (234)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHh
Confidence            56778887 669999999999999999999999877554

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=83.13  E-value=0.33  Score=48.03  Aligned_cols=31  Identities=29%  Similarity=0.448  Sum_probs=29.0

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCCceEEEeC
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEV  336 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~  336 (721)
                      |||.|+|+ |.+|+.++..|++.|++|+++|+
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~   32 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDN   32 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            47999997 99999999999999999999986

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=82.92  E-value=2.2  Score=40.25  Aligned_cols=38  Identities=26%  Similarity=0.221  Sum_probs=29.8

Q ss_pred             eEEEE-cC-CCCcHHHHHHHHHCCCceEEEeCCHH-HHHHH
Q 004972          307 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSE-YLLKG  344 (721)
Q Consensus       307 kI~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~~~-~~~~~  344 (721)
                      |++|| |+ +-+|.++|..|++.|++|++.+++.+ .++..
T Consensus         8 K~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~   48 (261)
T d1geea_           8 KVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSV   48 (261)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHH
Confidence            45555 54 77999999999999999999999854 44443

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.67  E-value=0.44  Score=44.32  Aligned_cols=108  Identities=7%  Similarity=-0.110  Sum_probs=60.9

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHH-HHhhcCcee-ccCc----
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKA-NNALKMLKG-VLDY----  379 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~i~~-~~~~----  379 (721)
                      .+|-.+|+|.  +..+..|++.|++|+.+|.+++.++.+.++........ ....+..... ...-..+.+ ..|.    
T Consensus        47 ~rvLd~GCG~--G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~d~~~l~  123 (229)
T d2bzga1          47 LRVFFPLCGK--AVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEE-PITEIPGTKVFKSSSGNISLYCCSIFDLP  123 (229)
T ss_dssp             CEEEETTCTT--CTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEE-ECTTSTTCEEEEETTSSEEEEESCGGGGG
T ss_pred             CEEEEeCCCC--cHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhcccccc-chhcccccceeeecCCcEEEEEcchhhcc
Confidence            4799999999  46788899999999999999999887754321100000 0000000000 000011211 1111    


Q ss_pred             -cccCCCCEEEEccc---CChHHHHHHHHHHHhhCCCCeEE
Q 004972          380 -SEFKDVDMVIEAVI---ESVPLKQKIFSELEKACPPHCIL  416 (721)
Q Consensus       380 -~~l~~aDlVIeavp---e~~~~k~~v~~~l~~~~~~~~ii  416 (721)
                       ......|+|+.+..   -..+....+++++...++|+..+
T Consensus       124 ~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~  164 (229)
T d2bzga1         124 RTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQY  164 (229)
T ss_dssp             GSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEE
T ss_pred             ccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceE
Confidence             12234677775541   12456678888999999988754

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=82.64  E-value=0.73  Score=43.29  Aligned_cols=30  Identities=23%  Similarity=0.104  Sum_probs=27.4

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEe
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKE  335 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d  335 (721)
                      ++|+|-|.|++|+..|..|.+.|..|+.++
T Consensus        32 ~~v~IqGfGnVG~~~a~~L~~~Gakvv~vs   61 (242)
T d1v9la1          32 KTVAIQGMGNVGRWTAYWLEKMGAKVIAVS   61 (242)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEee
Confidence            589999999999999999999999887655

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.48  E-value=4.2  Score=38.59  Aligned_cols=93  Identities=11%  Similarity=0.114  Sum_probs=58.7

Q ss_pred             eeEEEEcCCCCcHHHHHHHHH-CCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCcee-ccCcccc-
Q 004972          306 RKVAVIGGGLMGSGIATAHIL-NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDYSEF-  382 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~-~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~l-  382 (721)
                      ++|.=||+|.=|  ++..+++ .|.+|+.+|.+++.++.+.+++++       .+. .        .++.. ..++..+ 
T Consensus        54 ~~VLDiGCG~G~--~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~-------~~l-~--------~~~~~~~~d~~~~~  115 (280)
T d2fk8a1          54 MTLLDIGCGWGT--TMRRAVERFDVNVIGLTLSKNQHARCEQVLAS-------IDT-N--------RSRQVLLQGWEDFA  115 (280)
T ss_dssp             CEEEEESCTTSH--HHHHHHHHHCCEEEEEESCHHHHHHHHHHHHT-------SCC-S--------SCEEEEESCGGGCC
T ss_pred             CEEEEecCCchH--HHHHHHHhCceeEEEecchHHHHHHHHHHHHh-------hcc-c--------cchhhhhhhhhhhc
Confidence            589999999743  4555554 499999999999998887654322       121 1        12222 2233222 


Q ss_pred             CCCCEEE-----EcccCChHHHHHHHHHHHhhCCCCeEEEe
Q 004972          383 KDVDMVI-----EAVIESVPLKQKIFSELEKACPPHCILAT  418 (721)
Q Consensus       383 ~~aDlVI-----eavpe~~~~k~~v~~~l~~~~~~~~ii~s  418 (721)
                      ..-|.|+     +.++  ..-...+|+++...++|+..++.
T Consensus       116 ~~fD~i~si~~~eh~~--~~~~~~~f~~i~~~LkpgG~~~i  154 (280)
T d2fk8a1         116 EPVDRIVSIEAFEHFG--HENYDDFFKRCFNIMPADGRMTV  154 (280)
T ss_dssp             CCCSEEEEESCGGGTC--GGGHHHHHHHHHHHSCTTCEEEE
T ss_pred             cchhhhhHhhHHHHhh--hhhHHHHHHHHHhccCCCceEEE
Confidence            3456665     2222  23457899999999999876653

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.44  E-value=0.41  Score=49.14  Aligned_cols=32  Identities=25%  Similarity=0.409  Sum_probs=29.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCC-ceEEEeCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN  337 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~  337 (721)
                      .||.|||+|.+|+.++..|+..|+ +++++|.+
T Consensus        38 ~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D   70 (426)
T d1yovb1          38 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMD   70 (426)
T ss_dssp             CCEEEECSSTTHHHHHHHHHTTTCCCEEEECCC
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence            489999999999999999999998 89999975

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=82.26  E-value=2.2  Score=37.82  Aligned_cols=93  Identities=15%  Similarity=0.098  Sum_probs=61.3

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceec-cCc----c
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY----S  380 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~----~  380 (721)
                      .+|.=||+|.=..++  .+++.+.+|+.+|++++.++.+++++++.       | ++        .++++. .+.    .
T Consensus        35 ~~VLDiGcGsG~~s~--~lA~~~~~V~avD~~~~~l~~a~~n~~~~-------g-l~--------~~v~~~~gda~~~~~   96 (186)
T d1l3ia_          35 DVAVDVGCGTGGVTL--ELAGRVRRVYAIDRNPEAISTTEMNLQRH-------G-LG--------DNVTLMEGDAPEALC   96 (186)
T ss_dssp             CEEEEESCTTSHHHH--HHHTTSSEEEEEESCHHHHHHHHHHHHHT-------T-CC--------TTEEEEESCHHHHHT
T ss_pred             CEEEEEECCeEcccc--cccccceEEEEecCCHHHHHHHHHHHHHc-------C-CC--------cceEEEECchhhccc
Confidence            478889999855544  45777789999999999999887654321       1 10        123221 111    2


Q ss_pred             ccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEe
Q 004972          381 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT  418 (721)
Q Consensus       381 ~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s  418 (721)
                      .....|+|+...+  ......+++.+...++++..++.
T Consensus        97 ~~~~~D~v~~~~~--~~~~~~~~~~~~~~LkpgG~lvi  132 (186)
T d1l3ia_          97 KIPDIDIAVVGGS--GGELQEILRIIKDKLKPGGRIIV  132 (186)
T ss_dssp             TSCCEEEEEESCC--TTCHHHHHHHHHHTEEEEEEEEE
T ss_pred             ccCCcCEEEEeCc--cccchHHHHHHHHHhCcCCEEEE
Confidence            3467899987654  44456788888888888775543

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=82.22  E-value=0.33  Score=47.20  Aligned_cols=32  Identities=28%  Similarity=0.313  Sum_probs=30.0

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCceEEEeCCH
Q 004972          307 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNS  338 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~  338 (721)
                      -|.|||+|.-|.+.|..+++.|.+|++++..+
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~   49 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEP   49 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            49999999999999999999999999999764

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=82.10  E-value=0.32  Score=46.76  Aligned_cols=33  Identities=27%  Similarity=0.311  Sum_probs=29.9

Q ss_pred             eEEEEcCCCCcHHHHHHHHH-CCCceEEEeCCHH
Q 004972          307 KVAVIGGGLMGSGIATAHIL-NNIYVVLKEVNSE  339 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~-~G~~V~l~d~~~~  339 (721)
                      -|.|||+|.-|...|..|++ .|++|+++|..+.
T Consensus        35 DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~   68 (278)
T d1rp0a1          35 DVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS   68 (278)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHccCCeEEEEecCCC
Confidence            49999999999999999987 5999999998753

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=81.99  E-value=0.37  Score=47.76  Aligned_cols=35  Identities=17%  Similarity=0.102  Sum_probs=32.3

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCCceEEEeCCHHH
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEY  340 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~  340 (721)
                      +||-|.|+ |.+|+.++..|.+.|++|+++|++...
T Consensus         9 KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~   44 (356)
T d1rkxa_           9 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPT   44 (356)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence            79999995 999999999999999999999997654

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=81.95  E-value=1.6  Score=41.47  Aligned_cols=38  Identities=21%  Similarity=0.135  Sum_probs=29.5

Q ss_pred             EEEE-cC-CCCcHHHHHHHHHCCCceEEEeCC-HHHHHHHH
Q 004972          308 VAVI-GG-GLMGSGIATAHILNNIYVVLKEVN-SEYLLKGI  345 (721)
Q Consensus       308 I~VI-G~-G~mG~~iA~~la~~G~~V~l~d~~-~~~~~~~~  345 (721)
                      |+|| |+ +-+|.++|..|++.|.+|++.+++ ++.++...
T Consensus         4 VAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~   44 (284)
T d1e7wa_           4 VALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALS   44 (284)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHH
Confidence            7777 55 679999999999999999987654 55555443

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=81.93  E-value=0.34  Score=44.39  Aligned_cols=31  Identities=23%  Similarity=0.240  Sum_probs=29.3

Q ss_pred             eEEEEcCCCCcHHHHHHHHHCCCceEEEeCC
Q 004972          307 KVAVIGGGLMGSGIATAHILNNIYVVLKEVN  337 (721)
Q Consensus       307 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~  337 (721)
                      -|.|||+|.-|...|..+++.|.+|++++.+
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            3899999999999999999999999999985

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.92  E-value=5.6  Score=37.93  Aligned_cols=95  Identities=12%  Similarity=0.143  Sum_probs=59.5

Q ss_pred             eeEEEEcCCCCcHHHHHHH-HHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCcee-ccCcccc-
Q 004972          306 RKVAVIGGGLMGSGIATAH-ILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDYSEF-  382 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~l-a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~l-  382 (721)
                      ++|-=||+|.=|  ++..+ .+.|.+|+.++.+++.++.+.+++..       .|..         .++.. ..|.... 
T Consensus        63 ~~VLDiGCG~G~--~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~-------~~l~---------~~v~~~~~d~~~~~  124 (291)
T d1kpia_          63 MTLLDIGCGWGS--TMRHAVAEYDVNVIGLTLSENQYAHDKAMFDE-------VDSP---------RRKEVRIQGWEEFD  124 (291)
T ss_dssp             CEEEEETCTTSH--HHHHHHHHHCCEEEEEESCHHHHHHHHHHHHH-------SCCS---------SCEEEEECCGGGCC
T ss_pred             CEEEEecCcchH--HHHHHHHhcCcceeeccchHHHHHHHHHHHHh-------hccc---------hhhhhhhhcccccc
Confidence            489999999744  34444 46699999999999998887655432       2211         12222 1222221 


Q ss_pred             CCCCEEE-----EcccCC-----hHHHHHHHHHHHhhCCCCeEEEe
Q 004972          383 KDVDMVI-----EAVIES-----VPLKQKIFSELEKACPPHCILAT  418 (721)
Q Consensus       383 ~~aDlVI-----eavpe~-----~~~k~~v~~~l~~~~~~~~ii~s  418 (721)
                      ..-|.|+     |.+++.     ..-.+.+|+++...++|+..++.
T Consensus       125 ~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l  170 (291)
T d1kpia_         125 EPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLL  170 (291)
T ss_dssp             CCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEE
T ss_pred             cccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEE
Confidence            3467666     333322     13457899999999999886654

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=81.18  E-value=0.61  Score=38.46  Aligned_cols=37  Identities=22%  Similarity=0.245  Sum_probs=31.3

Q ss_pred             CceeEEEEcCCC-----------CcHHHHHHHHHCCCceEEEeCCHHH
Q 004972          304 GVRKVAVIGGGL-----------MGSGIATAHILNNIYVVLKEVNSEY  340 (721)
Q Consensus       304 ~~~kI~VIG~G~-----------mG~~iA~~la~~G~~V~l~d~~~~~  340 (721)
                      ..+||.|||+|.           .+...+..|.+.|+++++++.||+.
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeT   50 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPET   50 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTS
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhh
Confidence            457999999985           4566778888999999999999986

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.94  E-value=0.43  Score=42.21  Aligned_cols=31  Identities=23%  Similarity=0.116  Sum_probs=22.0

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCC--CceEEEeC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNN--IYVVLKEV  336 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G--~~V~l~d~  336 (721)
                      .||+|||+|.||...+..+.+..  ..+.+++.
T Consensus         8 ~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~   40 (172)
T d1lc0a1           8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGF   40 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEE
T ss_pred             cEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEec
Confidence            48999999999999887775432  23445543

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=80.92  E-value=1.3  Score=42.78  Aligned_cols=105  Identities=14%  Similarity=0.147  Sum_probs=62.7

Q ss_pred             ceeEEEEcCCCCcHHHHHHHHHC--CCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCcccc
Q 004972          305 VRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF  382 (721)
Q Consensus       305 ~~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l  382 (721)
                      .++|.|||+|.-  +++..+.+.  ..+|+++|++++.++.+.+.+.... ...+..++          .+...+-.+-+
T Consensus        90 pk~VLiiGgG~G--~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~-~~~~d~rv----------~v~~~Da~~~l  156 (295)
T d1inla_          90 PKKVLIIGGGDG--GTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTS-CGFDDPRA----------EIVIANGAEYV  156 (295)
T ss_dssp             CCEEEEEECTTC--HHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHH-GGGGCTTE----------EEEESCHHHHG
T ss_pred             CceEEEecCCch--HHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhc-ccccCCCc----------EEEhhhHHHHH
Confidence            368999999874  445555554  2479999999999988765433211 11121111          11111111111


Q ss_pred             ----CCCCEEEEcccCCh------HHHHHHHHHHHhhCCCCeEEEecCCC
Q 004972          383 ----KDVDMVIEAVIESV------PLKQKIFSELEKACPPHCILATNTST  422 (721)
Q Consensus       383 ----~~aDlVIeavpe~~------~~k~~v~~~l~~~~~~~~ii~s~ts~  422 (721)
                          +.-|+||.-.++..      -..+++++.+.+.++++.+++.++.+
T Consensus       157 ~~~~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~s  206 (295)
T d1inla_         157 RKFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED  206 (295)
T ss_dssp             GGCSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             hcCCCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCC
Confidence                34699996654321      12568889999999999999877654

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.68  E-value=0.46  Score=46.36  Aligned_cols=31  Identities=19%  Similarity=0.524  Sum_probs=29.2

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCCceEEEeC
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEV  336 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~  336 (721)
                      +||.|.|+ |.+|+.++..|.+.|++|+++|+
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~   33 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDN   33 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence            68999997 99999999999999999999986

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=80.54  E-value=3.6  Score=38.14  Aligned_cols=40  Identities=20%  Similarity=0.126  Sum_probs=30.2

Q ss_pred             eEEEE-cC-CCCcHHHHHHHHHCCCceEEEe-CCHHHHHHHHH
Q 004972          307 KVAVI-GG-GLMGSGIATAHILNNIYVVLKE-VNSEYLLKGIK  346 (721)
Q Consensus       307 kI~VI-G~-G~mG~~iA~~la~~G~~V~l~d-~~~~~~~~~~~  346 (721)
                      +|++| |+ +-+|.++|..|++.|++|++.+ ++++.++...+
T Consensus         2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~   44 (244)
T d1edoa_           2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSK   44 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH
Confidence            35555 54 7799999999999999999865 56666665543

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=80.50  E-value=0.29  Score=48.57  Aligned_cols=33  Identities=24%  Similarity=0.374  Sum_probs=28.4

Q ss_pred             CceeEEEEcC-CCCcHHHHHHHHHCCCceEEEeC
Q 004972          304 GVRKVAVIGG-GLMGSGIATAHILNNIYVVLKEV  336 (721)
Q Consensus       304 ~~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~  336 (721)
                      +||||-|.|+ |.+|+.++..|.+.|++|.++.+
T Consensus         1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~   34 (346)
T d1oc2a_           1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVL   34 (346)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEE
T ss_pred             CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEE
Confidence            3789999995 99999999999999998666554

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.43  E-value=0.41  Score=44.10  Aligned_cols=32  Identities=25%  Similarity=0.251  Sum_probs=29.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHCCCceEEEeCCHH
Q 004972          308 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSE  339 (721)
Q Consensus       308 I~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~  339 (721)
                      |.|||+|.-|..-|..+++.|.+|+++|..+.
T Consensus         8 viVIG~GpAGl~aA~~aa~~G~kV~lie~~~~   39 (233)
T d1v59a1           8 VVIIGGGPAGYVAAIKAAQLGFNTACVEKRGK   39 (233)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEEecCC
Confidence            99999999999999999999999999997643

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=80.36  E-value=1  Score=42.47  Aligned_cols=80  Identities=16%  Similarity=0.099  Sum_probs=54.8

Q ss_pred             eeEEEEcCCCCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCceeccCccccCCC
Q 004972          306 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV  385 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~a  385 (721)
                      +||+|||.  +  +....+.+.|.+++++|+++..                  |.            .......+.+.+|
T Consensus       123 ~kV~vIG~--~--P~v~~l~~~~~~~~VlE~~p~~------------------gd------------~p~~~~~~lLp~a  168 (251)
T d2h1qa1         123 KKVGVVGH--F--PHLESLLEPICDLSILEWSPEE------------------GD------------YPLPASEFILPEC  168 (251)
T ss_dssp             SEEEEESC--C--TTHHHHHTTTSEEEEEESSCCT------------------TC------------EEGGGHHHHGGGC
T ss_pred             CEEEEEec--c--hhHHHHHhcCCcEEEEeCCCCC------------------CC------------CCchHHHHhhhcC
Confidence            68999975  5  4556677888999999998642                  10            1111112557899


Q ss_pred             CEEEEcccCChHHHHHHHHHHHhhCCCCe-EEEecCCC
Q 004972          386 DMVIEAVIESVPLKQKIFSELEKACPPHC-ILATNTST  422 (721)
Q Consensus       386 DlVIeavpe~~~~k~~v~~~l~~~~~~~~-ii~s~ts~  422 (721)
                      |+||..-   ..+....+..|..++++.. +++...|+
T Consensus       169 D~viiTG---sTlvN~Tl~~LL~~~~~a~~vvl~GPS~  203 (251)
T d2h1qa1         169 DYVYITC---ASVVDKTLPRLLELSRNARRITLVGPGT  203 (251)
T ss_dssp             SEEEEET---HHHHHTCHHHHHHHTTTSSEEEEESTTC
T ss_pred             CEEEEEe---chhhcCCHHHHHHhCCcCCEEEEECCCc
Confidence            9999875   6777788889999987764 54444443

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=80.34  E-value=0.41  Score=40.15  Aligned_cols=77  Identities=17%  Similarity=0.105  Sum_probs=49.2

Q ss_pred             eeEEEEcCCCCcHHHHHHHHH-CCCce-EEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhhcCcee--ccCccc
Q 004972          306 RKVAVIGGGLMGSGIATAHIL-NNIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG--VLDYSE  381 (721)
Q Consensus       306 ~kI~VIG~G~mG~~iA~~la~-~G~~V-~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~--~~~~~~  381 (721)
                      .+|.|+|+|.+|..++..+.. .|+++ .++|-+++...+-                         ...+..  .++++.
T Consensus         4 ~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~-------------------------I~Gi~V~~~~~l~~   58 (126)
T d2dt5a2           4 WGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRP-------------------------VRGGVIEHVDLLPQ   58 (126)
T ss_dssp             EEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCE-------------------------ETTEEEEEGGGHHH
T ss_pred             ceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCE-------------------------ECCEEEecHHHHHH
Confidence            379999999999999986643 46654 5788877642210                         011211  222211


Q ss_pred             --cCCCCEEEEcccCChHHHHHHHHHHHhh
Q 004972          382 --FKDVDMVIEAVIESVPLKQKIFSELEKA  409 (721)
Q Consensus       382 --l~~aDlVIeavpe~~~~k~~v~~~l~~~  409 (721)
                        -...++++.++|  ....++++..+.+.
T Consensus        59 ~~~~~i~iai~~i~--~~~~~~I~d~l~~~   86 (126)
T d2dt5a2          59 RVPGRIEIALLTVP--REAAQKAADLLVAA   86 (126)
T ss_dssp             HSTTTCCEEEECSC--HHHHHHHHHHHHHH
T ss_pred             HHhhcccEEEEeCC--HHHHHHHHHHHHHc
Confidence              245788999998  67777887777654

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.13  E-value=0.49  Score=46.78  Aligned_cols=31  Identities=29%  Similarity=0.386  Sum_probs=28.9

Q ss_pred             eeEEEEcC-CCCcHHHHHHHHHCCCceEEEeC
Q 004972          306 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEV  336 (721)
Q Consensus       306 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~  336 (721)
                      +||.|.|+ |.+|+.++..|.+.|++|+++|+
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~   34 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN   34 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            58999996 99999999999999999999984

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.06  E-value=0.5  Score=40.08  Aligned_cols=97  Identities=18%  Similarity=0.126  Sum_probs=56.4

Q ss_pred             eeEEEEcCC----------CCcHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHhhhhcCCCCHHHHHHhh--cCc
Q 004972          306 RKVAVIGGG----------LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNAL--KML  373 (721)
Q Consensus       306 ~kI~VIG~G----------~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~i  373 (721)
                      +||+|+|+-          .-...++..|...|.+|.+||..-+..+..              + ...+......  ...
T Consensus        14 kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~--------------~-~~~~~~~~~~~~~~~   78 (136)
T d1mv8a3          14 RKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVH--------------G-ANKEYIESKIPHVSS   78 (136)
T ss_dssp             CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTS--------------S-SCHHHHHHTSHHHHT
T ss_pred             CEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHh--------------h-hhhhhhhhccccccc
Confidence            589999974          345678889999999999999743221100              0 0000000000  012


Q ss_pred             eeccCc-cccCCCCEEEEcccCChHHHHHHHHHHHhhCCCCeEEEecCCCC
Q 004972          374 KGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI  423 (721)
Q Consensus       374 ~~~~~~-~~l~~aDlVIeavpe~~~~k~~v~~~l~~~~~~~~ii~s~ts~~  423 (721)
                      ...+++ +++.++|+||.+++-+ +     |.++...+.++.+|++...-+
T Consensus        79 ~~~~~~~e~i~~~D~ivi~t~h~-~-----f~~l~~~~~~~~~I~D~~~~~  123 (136)
T d1mv8a3          79 LLVSDLDEVVASSDVLVLGNGDE-L-----FVDLVNKTPSGKKLVDLVGFM  123 (136)
T ss_dssp             TBCSCHHHHHHHCSEEEECSCCG-G-----GHHHHHSCCTTCEEEESSSCC
T ss_pred             eeehhhhhhhhhceEEEEEeCCH-H-----HHHHHHHhcCCCEEEECCCCC
Confidence            223444 6689999999998733 2     233444556677777755543