Citrus Sinensis ID: 004974

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-
MASAGSLQLSHDLGLCRNQVFKKQFKNVMGRGKSHLLSATLTSRASFWPQDFRSFNLSGSPYSQINPIPYRSNRIRSYNALQCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRKSDNSWKKSKTHHVMTSYIQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLVSILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIFSDADLENVPFADTIYNRGGGASNRPLLLIEPPYRINGEDKTKSQTRPSRSSGEQDGKTTPRLTPDVKADSKVSVSSKSDSKADAKIPEAPNSDTREDKNGAAAHMSDPKVADKVTVKSTSKSFPKTKSKVAEISSSEPKVLGSTSDNPTKDRKVSDSKQPKIVGQGNATQNSKIDNPSISSSGGSDKAGGLQESKQESNKLPSTQPPVSRPALEENIVLGVALEGSKRTLPIEEGMPSSQPVVKELTTANRNGNVSSTAEKEKKDGQIPSTRSATSGVSESN
ccccccEEEccccccccccccHHHHHHHHccccEEEEEEEccccccccccccccccccccccccccccccccHHHccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEcccccEEEEEEEEEEEEEEEEEEcccccEEEEEccccccccEEcccccccEEEEEEEEEEcccHHHHHHHHHHHHHHHHHccccccccccEEEEEccccccccccEEEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccHHHHHHHHHcccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccc
ccccccEEcccccccccccccccccccccccccEEEEEEcccccccccccccHHHcccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHEEEccccEcccEEEEcccccEEEEEEEEEEEEEEEEEEEccccEEEEcccHHEEEEEEccccccccEEEEEEEEEEccHHHHHHHHHHHHHHHHHccccccccccccEEEEEEcccccccEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHccccEEcccEEEEEEccccccccccccccHcccccccccccEEEEccccEEcccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHEEEEEEEccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccc
masagslqlshdlglcrnQVFKKQFKNVMGRGKSHLLSATltsrasfwpqdfrsfnlsgspysqinpipyrsnrirsynalqcspqalklvPGIAIIVFAtwglgplmrQSRNLLLrksdnswkkskthhVMTSYIQPLMLWTGAILICRaldpvvlpteaGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQKFFMettdsgdarnmgFQFAGKAVYSAVWVASASLFMELLGFSTqkwltaggLGTVLLTLAGREIFTNFLSSAmihatrpfvLNEWIQTKIEGYEVsgtvehvgwwsptivrgedreavhipnhkfTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLVSILVSCFvktshheeylCVKEAILLDLLRVISHHRARLATPIRTVQkifsdadlenvpfadtiynrgggasnrplllieppyringedktksqtrpsrssgeqdgkttprltpdvkadskvsvssksdskadakipeapnsdtredkngaaahmsdpkvadkvtvkstsksfpktkskvaeisssepkvlgstsdnptkdrkvsdskqpkivgqgnatqnskidnpsisssggsdkagglqeskqesnklpstqppvsrpaleeNIVLGVAlegskrtlpieegmpssqpvVKELTTanrngnvsstaekekkdgqipstrsatsgvsesn
masagslqlshdlglcRNQVFKKQFKNVMGRGKSHLLSATLTSRASFWPQDFRsfnlsgspysqINPIPYRSNRIRSYNALQCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRKSdnswkksktHHVMTSYIQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDReavhipnhkftvNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLVSILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRarlatpirtvqkifsdadlenvpFADTIynrgggasnrpllLIEPPYringedktksqtrpsrssgeqdgkttprltpdvkadskvsvssksdskadakipeapnsdtredkngaaahmsdpkvadkvtvkstsksfpktkskvaeisssepkvlgstsdnptkdrkvsdskqpkivgqgnatqnskidnpsisssggSDKAGGLQESKQesnklpstqppvsrpaLEENIVLGVALEGSkrtlpieegmpssqpvVKELTTanrngnvsstaekekkdgqipstrsatsgvsesn
MASAGSLQLSHDLGLCRNQVFKKQFKNVMGRGKSHLLSATLTSRASFWPQDFRSFNLSGSPYSQINPIPYRSNRIRSYNALQCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRKSDNSWKKSKTHHVMTSYIQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKavysavwvasasLFMELLGFSTQKWltagglgtvlltlagREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLVSILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIFSDADLENVPFADTIYNRGGGASNRPLLLIEPPYRINGEDKTKSQTRPSRSSGEQDGKTTPRLTPdvkadskvsvssksdskadakIPEAPNSDTREDKNGAAAHMSDPkvadkvtvkstsksfpktkskvAEISSSEPKVLGSTSDNPTKDRKVSDSKQPKIVGQGNATQNSKIDNPSISSSGGSDKAGGLQESKQESNKLPSTQPPVSRPALEENIVLGVALEGSKRTLPIEEGMPSSQPVVKELTTANRNGNVSSTAEKEKKDGQIPSTRSATSGVSESN
***********DLGLCRNQVFKKQFKNVMGRGKSHLLSATLTSRASFWPQDFRSFNLSGSPYSQINPIPYRSNRIRSYNALQCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRKSDNSWKKSKTHHVMTSYIQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLVSILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIFSDADLENVPFADTIYNRGGGASNRPLLLIEP*****************************************************************************************************************************************************************************************IVLGVA************************************************************
********LSHDLGLCRNQVFKKQFKNVMGRGKSHLLSATLTSRASFWPQDFRSFNLSGSPYSQINPIPYRSNRIRSYNALQCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRKSDNSWKKSKTHHVMTSYIQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQKFFME*T******NMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLVSILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQ*************************************************************************************************************************************************************************************************************************ENIVLGVALEGSKRTLP***************************************************
********LSHDLGLCRNQVFKKQFKNVMGRGKSHLLSATLTSRASFWPQDFRSFNLSGSPYSQINPIPYRSNRIRSYNALQCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRKSDN*********VMTSYIQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLVSILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIFSDADLENVPFADTIYNRGGGASNRPLLLIEPPYRINGE**********************************************************************************************************************************TQNSKIDNPS******************************SRPALEENIVLGVALEGSKRTLPIEEGMPSSQPVVKELTTANRNG*****************************
*****SLQLSHDLGLCRNQVFKK*****MGRGKSHLLSATLTSRASFWPQDFRSFNLSGSPYSQINPIPYRSNRIRSYNALQCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRKSDNSWKKSKTHHVMTSYIQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLVSILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIFSDADLENVPFADTIYNRGGGASNRPLLLIEPPYRIN***************************************************************************************************************************************************************************VSRPALEENIVLGVALEGSKRTLPIEE************************************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MASAGSLQLSHDLGLCRNQVFKKQFKNVMGRGKSHLLSATLTSRASFWPQDFRSFNLSGSPYSQINPIPYRSNRIRSYNALQCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRKSDNSWKKSKTHHVMTSYIQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLVSILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIFSDADLENVPFADTIYNRGGGASNRPLLLIEPPYRINGEDKTKSQTRPSRSSGEQDGKTTPRLTPDVKADSKVSVSSKSDSKADAKIPEAPNSDTREDKNGAAAHMSDPKVADKVTVKSTSKSFPKTKSKVAEISSSEPKVLGSTSDNPTKDRKVSDSKQPKIVGQGNATQNSKIDNPSISSSGGSDKAGGLQESKQESNKLPSTQPPVSRPALEENIVLGVALEGSKRTLPIEEGMPSSQPVVKELTTANRNGNVSSTAEKEKKDGQIPSTRSATSGVSESN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query721 2.2.26 [Sep-21-2011]
Q56X46673 Mechanosensitive ion chan yes no 0.879 0.942 0.573 0.0
Q8L7W1678 Mechanosensitive ion chan no no 0.872 0.927 0.515 0.0
P0AEB5343 MscS family inner membran N/A no 0.282 0.594 0.301 6e-21
P0AEB6343 MscS family inner membran N/A no 0.282 0.594 0.301 6e-21
O25170623 Uncharacterized MscS fami yes no 0.312 0.361 0.238 3e-12
Q9ZKG7623 Uncharacterized MscS fami yes no 0.287 0.332 0.243 5e-12
O66994368 Uncharacterized MscS fami yes no 0.319 0.625 0.243 3e-11
Q8VZL4497 Mechanosensitive ion chan no no 0.262 0.380 0.25 2e-09
Q58543361 Large-conductance mechano yes no 0.158 0.315 0.275 2e-05
O07594371 Uncharacterized MscS fami yes no 0.288 0.560 0.186 0.0002
>sp|Q56X46|MSL2_ARATH Mechanosensitive ion channel protein 2, chloroplastic OS=Arabidopsis thaliana GN=MSL2 PE=2 SV=1 Back     alignment and function desciption
 Score =  783 bits (2022), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/734 (57%), Positives = 500/734 (68%), Gaps = 100/734 (13%)

Query: 1   MASAGSLQLSHDLGLCRNQVFKKQFKNVMGRGKSHLLSATLTSRASFWPQDFRSFNLSGS 60
           MA  G+LQLSH LGLCRNQ F     + M R + H+ +  L+         F +  LS  
Sbjct: 1   MALYGTLQLSHSLGLCRNQRFCNPENSAMRR-RLHISNGPLSLGVPLGQHGFSNILLSNY 59

Query: 61  PYSQINPIPYRSNRIR------------------------SYNALQCSPQALKLVPGIAI 96
               I  +P R+   R                        S+  +Q  P   KLVP +A+
Sbjct: 60  LRRPICSVPCRTTAFRCHSFSASGKAIEPAVKAVTVVLTKSHGLMQQFPFVYKLVPAVAL 119

Query: 97  IVFATWGLGPLMRQSRNLLLRKSDNSWKKSKTHHVMTSYIQPLMLWTGAILICRALDPVV 156
           +VF+ WGL P  RQ RN+LL K+DN WKKS T+HVMTSY+QPL+LW GA+ ICRALDPVV
Sbjct: 120 LVFSLWGLVPFARQGRNILLNKNDNGWKKSGTYHVMTSYVQPLLLWLGALFICRALDPVV 179

Query: 157 LPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGK 216
           LPTEA ++VK RLLNFVRSLSTVLAFAYCLSSLIQQ QK F ET++  D RNMGFQFAGK
Sbjct: 180 LPTEASKIVKDRLLNFVRSLSTVLAFAYCLSSLIQQTQKLFSETSNPSDTRNMGFQFAGK 239

Query: 217 AVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFV 276
           A+YSAVWVA+ SLFMELLGFSTQKWLTAGGLGTVL+TLAGREI TNFLSS MIHATRPFV
Sbjct: 240 ALYSAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLITLAGREILTNFLSSVMIHATRPFV 299

Query: 277 LNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRI 336
           LNEWIQTKIEGYEVSGTVEHVGWWSPTI+RGEDREA+HIPNHKFTVNVVRNL+QK+HWRI
Sbjct: 300 LNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAIHIPNHKFTVNVVRNLTQKTHWRI 359

Query: 337 KTHLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLVSILVSC 396
           KTHLAISHLDV+KIN+IVADMRKVLAKNP VEQQRLHRRVFL+N+ PENQAL  SIL+SC
Sbjct: 360 KTHLAISHLDVNKINNIVADMRKVLAKNPMVEQQRLHRRVFLENVIPENQAL--SILISC 417

Query: 397 FVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIFSDADLENVPFADTIYNR 456
           FVKTSHHEEYL VKEAILLDLLRVISHHRARLATPIRT++K++++ D+EN PF +++Y  
Sbjct: 418 FVKTSHHEEYLGVKEAILLDLLRVISHHRARLATPIRTIRKMYTETDVENTPFGESMY-- 475

Query: 457 GGGASNRPLLLIEPPYRINGEDKTKSQTRPSRSSGEQDGKTTPRLTPDVKADSKVSVSSK 516
           GG  S RPL+LIEP Y+INGEDK+KSQ R ++ + EQ+ K          ++ K   +S 
Sbjct: 476 GGVTSRRPLMLIEPAYKINGEDKSKSQNRAAKPTAEQENK---------GSNPKSKETSS 526

Query: 517 SDSKADAKIPEAPNSDTREDKNGAAAHMSDPKVADKVTVKSTSKSFPKTKSKVAEISSSE 576
            D KA+ K+ E+P SDT                                 +KV E + ++
Sbjct: 527 PDLKANVKVGESPVSDT---------------------------------NKVPEETVAK 553

Query: 577 PKVLGSTSDNPT-KDRKVSDSKQPKIVGQGNATQNSKIDNPSISSSGGSDKAGGLQESKQ 635
           P V+ + S  PT KD + S +++PK    G   +++K D    S+S  S           
Sbjct: 554 P-VIKAVSKPPTPKDTETSGTEKPKAKRSGGTIKSTKTDETDSSTSSASRS--------- 603

Query: 636 ESNKLPSTQPPVSRPALEENIVLGVALEGSKRTLPIEEGM--PSSQPVVKELTTANRN-G 692
                           LEENIVLGVALEGSKRTLPIEE +  P  +   KELT A R+ G
Sbjct: 604 ---------------TLEENIVLGVALEGSKRTLPIEEEIHSPPMETDAKELTGARRSGG 648

Query: 693 NVSSTAEKEKKDGQ 706
           N    A+KE+KD Q
Sbjct: 649 NGPLVADKEQKDSQ 662
Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer (By similarity). Controls plastid size, shape, and perhaps division during normal plant development by altering ion flux in response to changes in membrane tension. Acts as a component of the chloroplast division machinery.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8L7W1|MSL3_ARATH Mechanosensitive ion channel protein 3, chloroplastic OS=Arabidopsis thaliana GN=MSL3 PE=2 SV=1 Back     alignment and function description
>sp|P0AEB5|YNAI_ECOLI MscS family inner membrane protein YnaI OS=Escherichia coli (strain K12) GN=ynaI PE=1 SV=1 Back     alignment and function description
>sp|P0AEB6|YNAI_ECO57 MscS family inner membrane protein YnaI OS=Escherichia coli O157:H7 GN=ynaI PE=3 SV=1 Back     alignment and function description
>sp|O25170|Y415_HELPY Uncharacterized MscS family protein HP_0415 OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=HP_0415 PE=3 SV=1 Back     alignment and function description
>sp|Q9ZKG7|Y415_HELPJ Uncharacterized MscS family protein jhp_0969 OS=Helicobacter pylori (strain J99) GN=jhp_0969 PE=3 SV=1 Back     alignment and function description
>sp|O66994|Y812_AQUAE Uncharacterized MscS family protein aq_812 OS=Aquifex aeolicus (strain VF5) GN=aq_812 PE=3 SV=1 Back     alignment and function description
>sp|Q8VZL4|MSL1_ARATH Mechanosensitive ion channel protein 1, mitochondrial OS=Arabidopsis thaliana GN=MSL1 PE=2 SV=1 Back     alignment and function description
>sp|Q58543|MSMJL_METJA Large-conductance mechanosensitive channel MscMJLR OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1143 PE=1 SV=1 Back     alignment and function description
>sp|O07594|YHDY_BACSU Uncharacterized MscS family protein YhdY OS=Bacillus subtilis (strain 168) GN=yhdY PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query721
255586028654 conserved hypothetical protein [Ricinus 0.879 0.969 0.741 0.0
255545964705 conserved hypothetical protein [Ricinus 0.937 0.958 0.589 0.0
356529683719 PREDICTED: uncharacterized protein LOC10 0.905 0.908 0.621 0.0
224094969576 predicted protein [Populus trichocarpa] 0.789 0.987 0.705 0.0
225459093709 PREDICTED: uncharacterized protein LOC10 0.929 0.944 0.588 0.0
356497700734 PREDICTED: uncharacterized protein LOC10 0.905 0.889 0.598 0.0
356508025681 PREDICTED: uncharacterized protein LOC10 0.894 0.947 0.569 0.0
356515716682 PREDICTED: uncharacterized protein LOC10 0.894 0.945 0.581 0.0
449469783704 PREDICTED: mechanosensitive ion channel 0.936 0.958 0.572 0.0
357485521735 MscS-Like mechanosensitive ion channel M 0.918 0.900 0.554 0.0
>gi|255586028|ref|XP_002533682.1| conserved hypothetical protein [Ricinus communis] gi|223526417|gb|EEF28698.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  978 bits (2527), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/653 (74%), Positives = 542/653 (83%), Gaps = 19/653 (2%)

Query: 76  RSYNALQCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRKSDNSWKKSKTHHVMTSY 135
           RSY+ALQ SP  LKL P + +I+FA WGLGPLMRQSRNLLL K+D++WKKS T++VMTSY
Sbjct: 5   RSYSALQGSPIMLKLAPAVGVIIFAIWGLGPLMRQSRNLLLNKNDSNWKKSGTYYVMTSY 64

Query: 136 IQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQK 195
           +QPL+LWTGA LICR LDP++LPTEA +VVKQRLLNFVRSLSTVLAFAYCLSS+IQQ QK
Sbjct: 65  VQPLLLWTGATLICRVLDPLILPTEASQVVKQRLLNFVRSLSTVLAFAYCLSSVIQQVQK 124

Query: 196 FFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLA 255
           F +E+ +  D RNMGFQFAGKAVYSAVWVA+ SLFMELLGFSTQKWLTAGGLGTVLLTLA
Sbjct: 125 FLIESNEPSDTRNMGFQFAGKAVYSAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLA 184

Query: 256 GREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHI 315
           GREIFTNFLSSAMIHATRPFV+NEWIQTKIEGYEVSGTVEHVGWWSPTI+RGEDREAVHI
Sbjct: 185 GREIFTNFLSSAMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAVHI 244

Query: 316 PNHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHRR 375
           PNHKFTVNVVRNLSQK+HWRIKTHLAISHLDVHKI++IVADMRKVLAKNPQVEQQRLHRR
Sbjct: 245 PNHKFTVNVVRNLSQKTHWRIKTHLAISHLDVHKIHNIVADMRKVLAKNPQVEQQRLHRR 304

Query: 376 VFLDNINPENQALLVSILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTV 435
           VFL+NINPENQALL  IL+SCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTV
Sbjct: 305 VFLENINPENQALL--ILISCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTV 362

Query: 436 QKIFSDADLENVPFADTIYNRGGGASNRPLLLIEPPYRINGEDKTKSQTRPSRSSGEQDG 495
           QKI+SDADLEN+PFAD+IYNRGG ASNRPLLLIEP YRING+DK KSQTR  R +G+Q+ 
Sbjct: 363 QKIYSDADLENIPFADSIYNRGGSASNRPLLLIEPSYRINGDDKAKSQTRQGRGAGDQEN 422

Query: 496 KTTPRLTPDVKADSKVSVSSKSDS------KADAKIPEAPNSDTREDKNGAAAHMSDPKV 549
           K   R TPD KA     V  KSDS      K+DAK+ E PNSD +E   GA   MSDPKV
Sbjct: 423 KAASRSTPDTKA----GVGPKSDSKTKEAPKSDAKVGETPNSDAKEHIKGATTSMSDPKV 478

Query: 550 ADKVTVKSTSKSFPKTKSKVAEISSSEPKVLGSTSDNPTKDRKVSDSKQPKIVGQGNATQ 609
            DK++VKS+  S PKT S +AE SS E K   S SDN  +++K+ DSKQ K    GN  Q
Sbjct: 479 GDKMSVKSSPNSVPKT-SNLAESSSPESKAAASVSDNVIQNKKIPDSKQSKSANPGNGRQ 537

Query: 610 NSKIDNPSIS-SSGGSDKAGGLQE---SKQESNKLPSTQPPVSRPALEENIVLGVALEGS 665
           N+++DNPS+S S  G++KA GLQE   SKQ + +  + Q   SRP+LEENIVLGVALEGS
Sbjct: 538 NTQLDNPSVSLSDAGTEKASGLQESPQSKQGAERKSNGQSSTSRPSLEENIVLGVALEGS 597

Query: 666 KRTLPIEEGMP--SSQPVVKELTTANRNGNVSSTAEKEKKDGQIPSTRSATSG 716
           KRTLPIEE M    +Q  VKE+  A RNGN S T E + KDGQIP   +ATSG
Sbjct: 598 KRTLPIEEDMTPHPTQGEVKEMAAAGRNGNASPTGETDGKDGQIPLPPNATSG 650

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255545964|ref|XP_002514042.1| conserved hypothetical protein [Ricinus communis] gi|223547128|gb|EEF48625.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356529683|ref|XP_003533418.1| PREDICTED: uncharacterized protein LOC100796304 [Glycine max] Back     alignment and taxonomy information
>gi|224094969|ref|XP_002310309.1| predicted protein [Populus trichocarpa] gi|222853212|gb|EEE90759.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225459093|ref|XP_002283836.1| PREDICTED: uncharacterized protein LOC100259028 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356497700|ref|XP_003517697.1| PREDICTED: uncharacterized protein LOC100789444 [Glycine max] Back     alignment and taxonomy information
>gi|356508025|ref|XP_003522763.1| PREDICTED: uncharacterized protein LOC100796022 [Glycine max] Back     alignment and taxonomy information
>gi|356515716|ref|XP_003526544.1| PREDICTED: uncharacterized protein LOC100777815 [Glycine max] Back     alignment and taxonomy information
>gi|449469783|ref|XP_004152598.1| PREDICTED: mechanosensitive ion channel protein 3, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357485521|ref|XP_003613048.1| MscS-Like mechanosensitive ion channel MSCL8 [Medicago truncatula] gi|355514383|gb|AES96006.1| MscS-Like mechanosensitive ion channel MSCL8 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query721
TAIR|locus:2142414673 MSL2 "MSCS-like 2" [Arabidopsi 0.583 0.625 0.715 2.5e-192
TAIR|locus:2015297678 MSL3 "MSCS-like 3" [Arabidopsi 0.570 0.606 0.639 3.3e-159
UNIPROTKB|P0AEB5343 ynaI "mechanosensitive channel 0.237 0.498 0.290 2.9e-15
UNIPROTKB|Q83CN5383 CBU_1075 "Mechanosensitive ion 0.235 0.443 0.25 2.2e-12
TIGR_CMR|CBU_1075383 CBU_1075 "membrane protein, pu 0.235 0.443 0.25 2.2e-12
TAIR|locus:2126061497 AT4G00290 [Arabidopsis thalian 0.262 0.380 0.22 0.00025
TAIR|locus:2142414 MSL2 "MSCS-like 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1607 (570.8 bits), Expect = 2.5e-192, Sum P(3) = 2.5e-192
 Identities = 305/426 (71%), Positives = 350/426 (82%)

Query:    76 RSYNALQCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRKSDNSWKKSKTHHVMTSY 135
             +S+  +Q  P   KLVP +A++VF+ WGL P  RQ RN+LL K+DN WKKS T+HVMTSY
Sbjct:    99 KSHGLMQQFPFVYKLVPAVALLVFSLWGLVPFARQGRNILLNKNDNGWKKSGTYHVMTSY 158

Query:   136 IQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQK 195
             +QPL+LW GA+ ICRALDPVVLPTEA ++VK RLLNFVRSLSTVLAFAYCLSSLIQQ QK
Sbjct:   159 VQPLLLWLGALFICRALDPVVLPTEASKIVKDRLLNFVRSLSTVLAFAYCLSSLIQQTQK 218

Query:   196 FFMETTDSGDARNMGFQFAGKXXXXXXXXXXXXLFMELLGFSTQKWXXXXXXXXXXXXXX 255
              F ET++  D RNMGFQFAGK            LFMELLGFSTQKW              
Sbjct:   219 LFSETSNPSDTRNMGFQFAGKALYSAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLITLA 278

Query:   256 XREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHI 315
              REI TNFLSS MIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTI+RGEDREA+HI
Sbjct:   279 GREILTNFLSSVMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAIHI 338

Query:   316 PNHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHRR 375
             PNHKFTVNVVRNL+QK+HWRIKTHLAISHLDV+KIN+IVADMRKVLAKNP VEQQRLHRR
Sbjct:   339 PNHKFTVNVVRNLTQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPMVEQQRLHRR 398

Query:   376 VFLDNINPENQALLVSILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTV 435
             VFL+N+ PENQAL  SIL+SCFVKTSHHEEYL VKEAILLDLLRVISHHRARLATPIRT+
Sbjct:   399 VFLENVIPENQAL--SILISCFVKTSHHEEYLGVKEAILLDLLRVISHHRARLATPIRTI 456

Query:   436 QKIFSDADLENVPFADTIYNRGGGASNRPLLLIEPPYRINGEDKTKSQTRPSRSSGEQDG 495
             +K++++ D+EN PF +++Y  GG  S RPL+LIEP Y+INGEDK+KSQ R ++ + EQ+ 
Sbjct:   457 RKMYTETDVENTPFGESMY--GGVTSRRPLMLIEPAYKINGEDKSKSQNRAAKPTAEQEN 514

Query:   496 K-TTPR 500
             K + P+
Sbjct:   515 KGSNPK 520
GO:0005886 "plasma membrane" evidence=ISM
GO:0016020 "membrane" evidence=IEA;ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0005216 "ion channel activity" evidence=IGI
GO:0009526 "plastid envelope" evidence=IDA
GO:0009657 "plastid organization" evidence=IGI
GO:0009507 "chloroplast" evidence=IDA
GO:0010020 "chloroplast fission" evidence=IGI
TAIR|locus:2015297 MSL3 "MSCS-like 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P0AEB5 ynaI "mechanosensitive channel YnaI monomer" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q83CN5 CBU_1075 "Mechanosensitive ion channel" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1075 CBU_1075 "membrane protein, putative" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TAIR|locus:2126061 AT4G00290 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q56X46MSL2_ARATHNo assigned EC number0.57350.87930.9420yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.VII.3998.1
hypothetical protein (540 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query721
pfam00924202 pfam00924, MS_channel, Mechanosensitive ion channe 8e-20
COG0668316 COG0668, MscS, Small-conductance mechanosensitive 2e-16
>gnl|CDD|201506 pfam00924, MS_channel, Mechanosensitive ion channel Back     alignment and domain information 
 Score = 88.0 bits (219), Expect = 8e-20
 Identities = 46/196 (23%), Positives = 88/196 (44%), Gaps = 12/196 (6%)

Query: 221 AVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEW 280
            + V    + +  LG +    L   G   + L  A +++ +N +S  +I   +PF + +W
Sbjct: 5   LIIVVGILIVLSYLGVNVSALLAGLGALGLALGFALQDLVSNLVSGIIILFEKPFKIGDW 64

Query: 281 IQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHL 340
           I+      +V GTVE +G  S T +R  D   V IPN K   + + NLS+    R++  +
Sbjct: 65  IEIG----DVEGTVEDIGIRS-TTIRTFDGRLVTIPNSKILTSNIINLSRSPTRRVEVSI 119

Query: 341 AISH-LDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLVSILVSCFVK 399
            +++  D  K+  ++  +++   ++P V  +     V        +    ++  V  +VK
Sbjct: 120 GVAYSSDPKKLEKVIEILKEAAYEHPLV-LKDPEPPVVFGEFGDSS----LNFEVRVWVK 174

Query: 400 TSHHEEYLCVKEAILL 415
           T    EY  V+  + L
Sbjct: 175 TL-PGEYFNVRSELNL 189

Two members of this protein family from M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins. Length = 202
>gnl|CDD|223740 COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 721
PRK10334286 mechanosensitive channel MscS; Provisional 100.0
PRK11465741 putative mechanosensitive channel protein; Provisi 100.0
PRK112811113 hypothetical protein; Provisional 100.0
PRK109291109 putative mechanosensitive channel protein; Provisi 100.0
COG3264835 Small-conductance mechanosensitive channel [Cell e 100.0
PF00924206 MS_channel: Mechanosensitive ion channel; InterPro 100.0
COG0668316 MscS Small-conductance mechanosensitive channel [C 100.0
KOG4629714 consensus Predicted mechanosensitive ion channel [ 99.75
PRK112811113 hypothetical protein; Provisional 88.17
PRK02509 973 hypothetical protein; Provisional 88.08
PRK12438 991 hypothetical protein; Provisional 86.9
PRK10263 1355 DNA translocase FtsK; Provisional 85.71
PF03699774 UPF0182: Uncharacterised protein family (UPF0182); 84.4
PF12794340 MscS_TM: Mechanosensitive ion channel inner membra 83.38
COG0053304 MMT1 Predicted Co/Zn/Cd cation transporters [Inorg 82.57
PRK00068 970 hypothetical protein; Validated 81.7
TIGR01654679 bact_immun_7tm bacteriocin-associated integral mem 80.13
>PRK10334 mechanosensitive channel MscS; Provisional Back     alignment and domain information 
Probab=100.00  E-value=6.4e-43  Score=369.61  Aligned_cols=251  Identities=18%  Similarity=0.249  Sum_probs=222.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Q 004974          168 RLLNFVRSLSTVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGL  247 (721)
Q Consensus       168 ~l~~~l~slliil~~~~~l~rli~~i~~~~~~~~~~~~~r~~~i~~i~~ii~ivI~iIaiiiiL~~lGv~itsLLaslGi  247 (721)
                      +.++++.+++ +++++|++.+++..+.+.+.++..   .+.....++.+++++++++++++++|..+|++++++++++|+
T Consensus        27 ~~~~i~~al~-il~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~l~~lGi~~~~l~a~~G~  102 (286)
T PRK10334         27 YAVNIVAALA-IIIVGLIIARMISNAVNRLMISRK---IDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGA  102 (286)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            3445555554 445688888888875554443322   233346788999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhHHHHhhhhhheeecCCccCCcEEEEeecCCCeEEEEEEEeceeeEEEEecCCcEEEEeccccccCcEEe
Q 004974          248 GTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRN  327 (721)
Q Consensus       248 ~gvalgLAaqdiL~N~iaGi~I~~~rPFrVGD~I~I~i~g~~v~G~VeeIgL~stT~IRt~Dg~~V~IPNs~l~s~~V~N  327 (721)
                      +|+++|||+|++++|++||++|+++|||++||||++    ++++|+|++|+||+ |++|++||+.++|||+.+.++.|+|
T Consensus       103 ~glaiG~a~q~~l~N~~sGi~i~~~rpf~vGD~I~i----~~~~G~V~~I~~r~-T~i~t~d~~~v~IPNs~~~~~~i~N  177 (286)
T PRK10334        103 AGLAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDL----GGVAGTVLSVQIFS-TTMRTADGKIIVIPNGKIIAGNIIN  177 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEE----CCEEEEEEEEEeEE-EEEEcCCCCEEEEcchHhcCCeeEE
Confidence            999999999999999999999999999999999999    78999999999999 9999999999999999999999999


Q ss_pred             cccCCceEEEEEEEecc-CCHHHHHHHHHHHHHHHHcCCCccccccccEEEEEeeCCCcccceeeEEEEEEEecCChHHH
Q 004974          328 LSQKSHWRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLVSILVSCFVKTSHHEEY  406 (721)
Q Consensus       328 ~Sr~~~~ri~~~I~I~y-tD~ekv~~i~~~l~e~L~~~p~v~~~~~~P~V~v~~~~~s~~sL~V~I~V~~~v~~~~~~~~  406 (721)
                      ||+.+.+|+.+.++++| +|++++++   .++++++++|.+..+| +|.|.+.++++++  +  +++++||+++.+   |
T Consensus       178 ~s~~~~rr~~~~v~V~y~~d~~~~~~---il~~~~~~~~~vl~~p-~p~v~~~~~~dss--i--~~~v~~wv~~~~---~  246 (286)
T PRK10334        178 FSREPVRRNEFIIGVAYDSDIDQVKQ---ILTNIIQSEDRILKDR-EMTVRLNELGASS--I--NFVVRVWSNSGD---L  246 (286)
T ss_pred             cCCCCeEEEEEEEEecCCCCHHHHHH---HHHHHHHhCCceecCC-CCEEEEEeeeCce--E--EEEEEEEEecch---h
Confidence            99988899999999999 89999999   5778899999999888 7899999999995  4  499999999764   5


Q ss_pred             HHHHHHHHHHHHHHHHHCCCccCCCcEEEEEe
Q 004974          407 LCVKEAILLDLLRVISHHRARLATPIRTVQKI  438 (721)
Q Consensus       407 ~~vr~~L~~~Il~~~~e~GIeia~P~~tv~~~  438 (721)
                      ++++++++++|+++|+++||++|||+++++..
T Consensus       247 ~~~~~~~~~~I~~~f~~~gI~ip~p~~~v~~~  278 (286)
T PRK10334        247 QNVYWDVLERIKREFDAAGISFPYPQMDVNFK  278 (286)
T ss_pred             HHHHHHHHHHHHHHHHHCCCcCCCCCeEEEec
Confidence            78999999999999999999999999998854

>PRK11465 putative mechanosensitive channel protein; Provisional Back     alignment and domain information
>PRK11281 hypothetical protein; Provisional Back     alignment and domain information
>PRK10929 putative mechanosensitive channel protein; Provisional Back     alignment and domain information
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF00924 MS_channel: Mechanosensitive ion channel; InterPro: IPR006685 Mechanosensitive (MS) channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation Back     alignment and domain information
>COG0668 MscS Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>PRK11281 hypothetical protein; Provisional Back     alignment and domain information
>PRK02509 hypothetical protein; Provisional Back     alignment and domain information
>PRK12438 hypothetical protein; Provisional Back     alignment and domain information
>PRK10263 DNA translocase FtsK; Provisional Back     alignment and domain information
>PF03699 UPF0182: Uncharacterised protein family (UPF0182); InterPro: IPR005372 This family contains uncharacterised integral membrane proteins Back     alignment and domain information
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1 Back     alignment and domain information
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK00068 hypothetical protein; Validated Back     alignment and domain information
>TIGR01654 bact_immun_7tm bacteriocin-associated integral membrane (putative immunity) protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query721
2vv5_A286 MSCS, small-conductance mechanosensitive channel; 1e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-12
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A Length = 286 Back     alignment and structure
 Score = 73.9 bits (182), Expect = 1e-14
 Identities = 35/196 (17%), Positives = 81/196 (41%), Gaps = 22/196 (11%)

Query: 212 QFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHA 271
            F    V   +   +    +  +G  T   +   G   +++ LA +   +N  +  ++  
Sbjct: 67  DFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLVVGLALQGSLSNLAAGVLLVM 126

Query: 272 TRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQK 331
            RPF   E++        V+GTV  V  +S T +R  D + + IPN K     + N S++
Sbjct: 127 FRPFRAGEYVDLG----GVAGTVLSVQIFS-TTMRTADGKIIVIPNGKIIAGNIINFSRE 181

Query: 332 SHWRIKTHLAISH-LDVHK----INSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQ 386
              R +  + +++  D+ +    + +I+    ++L K+ ++        V L+ +   + 
Sbjct: 182 PVRRNEFIIGVAYDSDIDQVKQILTNIIQSEDRIL-KDREMT-------VRLNELGASS- 232

Query: 387 ALLVSILVSCFVKTSH 402
              ++ +V  +  +  
Sbjct: 233 ---INFVVRVWSNSGD 245
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query721
2vv5_A286 MSCS, small-conductance mechanosensitive channel; 100.0
3udc_A285 Small-conductance mechanosensitive channel, C-TER 100.0
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A Back     alignment and structure
Probab=100.00  E-value=1.4e-42  Score=365.25  Aligned_cols=248  Identities=18%  Similarity=0.255  Sum_probs=219.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Q 004974          171 NFVRSLSTVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTV  250 (721)
Q Consensus       171 ~~l~slliil~~~~~l~rli~~i~~~~~~~~~~~~~r~~~i~~i~~ii~ivI~iIaiiiiL~~lGv~itsLLaslGi~gv  250 (721)
                      +++.++ ++++++|++.+++..+.+.+..+..   .+.....++.+++++++++++++++|..+|++++++++++|++|+
T Consensus        30 ~i~~~~-~i~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~i~~i~~~~~l~~~gi~~~~l~a~~g~~g~  105 (286)
T 2vv5_A           30 NIVAAL-AIIIVGLIIARMISNAVNRLMISRK---IDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGL  105 (286)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            344433 3455677788888765444443322   234456789999999999999999999999999999999999999


Q ss_pred             HHHHHhhhHHHHhhhhhheeecCCccCCcEEEEeecCCCeEEEEEEEeceeeEEEEecCCcEEEEeccccccCcEEeccc
Q 004974          251 LLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQ  330 (721)
Q Consensus       251 algLAaqdiL~N~iaGi~I~~~rPFrVGD~I~I~i~g~~v~G~VeeIgL~stT~IRt~Dg~~V~IPNs~l~s~~V~N~Sr  330 (721)
                      ++|||+|++++|++||++|+++|||++||||++    +++.|+|++|+||+ |++|++||+.++|||+.+.++.|+|||+
T Consensus       106 aig~a~q~~l~n~~sGi~i~~~~pf~vGD~I~i----~g~~G~V~~I~l~~-T~i~t~dg~~v~IPNs~l~~~~i~N~s~  180 (286)
T 2vv5_A          106 VVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDL----GGVAGTVLSVQIFS-TTMRTADGKIIVIPNGKIIAGNIINFSR  180 (286)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHTTCSSCTTCEEES----SSCEEEEEEECSSE-EEEECTTSCEEEEEHHHHHTSCEEESSS
T ss_pred             HHHHHHHHHHHHHHhhhHHHhcCCccCCCEEEE----CCEEEEEEEEEeEE-EEEEeCCCCEEEechHHHhhCceEECCC
Confidence            999999999999999999999999999999999    78999999999999 9999999999999999999999999999


Q ss_pred             CCceEEEEEEEecc-CCHHHHHHHHHHHHHHHHcCCCccccccccEEEEEeeCCCcccceeeEEEEEEEecCChHHHHHH
Q 004974          331 KSHWRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLVSILVSCFVKTSHHEEYLCV  409 (721)
Q Consensus       331 ~~~~ri~~~I~I~y-tD~ekv~~i~~~l~e~L~~~p~v~~~~~~P~V~v~~~~~s~~sL~V~I~V~~~v~~~~~~~~~~v  409 (721)
                      .+.+|+.+.++++| +|++++++   .+++++++||.+..++ .|.|++.++++++  +.  ++++||++..   +|+.+
T Consensus       181 ~~~~r~~~~v~v~y~~d~~~v~~---~l~~~~~~~~~vl~~p-~p~v~v~~~~~~~--i~--~~v~~~~~~~---~~~~~  249 (286)
T 2vv5_A          181 EPVRRNEFIIGVAYDSDIDQVKQ---ILTNIIQSEDRILKDR-EMTVRLNELGASS--IN--FVVRVWSNSG---DLQNV  249 (286)
T ss_dssp             SSEEEEEEEEEECTTSCHHHHHH---HHHHHHHHCTTBCTTS-CEEEEEEEECSSS--EE--EEEEEEEETT---THHHH
T ss_pred             CCcEEEEEEEEEcCCCCHHHHHH---HHHHHHHhCcccccCC-CCEEEEEEecCCe--EE--EEEEEEEccc---hHHHH
Confidence            98889999999999 99999988   6778899999998887 7899999999985  44  9999999974   56899


Q ss_pred             HHHHHHHHHHHHHHCCCccCCCcEEEEEe
Q 004974          410 KEAILLDLLRVISHHRARLATPIRTVQKI  438 (721)
Q Consensus       410 r~~L~~~Il~~~~e~GIeia~P~~tv~~~  438 (721)
                      |++++++|+++|+++||++|||+++++..
T Consensus       250 ~~~l~~~i~~~~~~~gI~ip~P~~~v~~~  278 (286)
T 2vv5_A          250 YWDVLERIKREFDAAGISFPYPQMDVNFK  278 (286)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCCCEEEEEEE
T ss_pred             HHHHHHHHHHHHHHCCCcCCCCceEEEec
Confidence            99999999999999999999999998854
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 721
d2vv5a167 b.38.1.3 (A:113-179) Mechanosensitive channel prot 1e-11
>d2vv5a1 b.38.1.3 (A:113-179) Mechanosensitive channel protein MscS (YggB), middle domain {Escherichia coli [TaxId: 562]} Length = 67 Back     information, alignment and structure

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Mechanosensitive channel protein MscS (YggB), middle domain
domain: Mechanosensitive channel protein MscS (YggB), middle domain
species: Escherichia coli [TaxId: 562]

 Score = 58.2 bits (141), Expect = 1e-11
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 262 NFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFT 321
           N  +  ++   RPF   E++   + G    GTV  V  +S T +R  D + + IPN K  
Sbjct: 5   NLAAGVLLVMFRPFRAGEYV--DLGGVA--GTVLSVQIFS-TTMRTADGKIIVIPNGKII 59

Query: 322 VNVVRNLS 329
              + N S
Sbjct: 60  AGNIINFS 67

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query721
d2vv5a167 Mechanosensitive channel protein MscS (YggB), midd 99.74
d2vv5a2101 Mechanosensitive channel protein MscS (YggB), C-te 99.53
d2vv5a386 Mechanosensitive channel protein MscS (YggB), tran 98.8
>d2vv5a1 b.38.1.3 (A:113-179) Mechanosensitive channel protein MscS (YggB), middle domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Mechanosensitive channel protein MscS (YggB), middle domain
domain: Mechanosensitive channel protein MscS (YggB), middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=5.6e-19  Score=145.80  Aligned_cols=66  Identities=30%  Similarity=0.445  Sum_probs=64.3

Q ss_pred             HHHHhhhhhheeecCCccCCcEEEEeecCCCeEEEEEEEeceeeEEEEecCCcEEEEeccccccCcEEecc
Q 004974          259 IFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLS  329 (721)
Q Consensus       259 iL~N~iaGi~I~~~rPFrVGD~I~I~i~g~~v~G~VeeIgL~stT~IRt~Dg~~V~IPNs~l~s~~V~N~S  329 (721)
                      +|+|++||++|++++||++||||++    ++..|+|++|+|++ |++|+.||+.++|||+.|.++.|.|||
T Consensus         2 tlsN~~sGi~i~~~~pf~vGD~I~i----~~~~G~V~~I~l~~-T~l~~~dg~~i~iPN~~~~~~~i~N~S   67 (67)
T d2vv5a1           2 SLSNLAAGVLLVMFRPFRAGEYVDL----GGVAGTVLSVQIFS-TTMRTADGKIIVIPNGKIIAGNIINFS   67 (67)
T ss_dssp             HHHHHHHHHHHHTTCSSCTTCEEES----SSCEEEEEEECSSE-EEEECTTSCEEEEEHHHHHTSCEEESS
T ss_pred             cHHHHHHHhhheeeCCccCCCEEEE----CCEEEEEEEEeceE-EEEEccCCCEEEEECHHHcCCccEECc
Confidence            6899999999999999999999999    78999999999999 999999999999999999999999997
>d2vv5a2 d.58.43.1 (A:180-280) Mechanosensitive channel protein MscS (YggB), C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]} Back     information, alignment and structure