Citrus Sinensis ID: 004997
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 720 | 2.2.26 [Sep-21-2011] | |||||||
| B9HQZ6 | 994 | Probable alanine--tRNA li | yes | no | 0.990 | 0.717 | 0.807 | 0.0 | |
| Q9FFC7 | 978 | Probable alanine--tRNA li | yes | no | 0.934 | 0.688 | 0.769 | 0.0 | |
| C5Z7K4 | 961 | Probable alanine--tRNA li | N/A | no | 0.955 | 0.715 | 0.737 | 0.0 | |
| B8B4H5 | 996 | Probable alanine--tRNA li | N/A | no | 0.927 | 0.670 | 0.751 | 0.0 | |
| B9FSH5 | 932 | Probable alanine--tRNA li | yes | no | 0.927 | 0.716 | 0.750 | 0.0 | |
| Q2JLC4 | 884 | Alanine--tRNA ligase OS=S | yes | no | 0.911 | 0.742 | 0.572 | 0.0 | |
| Q2JTG8 | 883 | Alanine--tRNA ligase OS=S | yes | no | 0.901 | 0.734 | 0.582 | 0.0 | |
| B0JI84 | 874 | Alanine--tRNA ligase OS=M | yes | no | 0.894 | 0.736 | 0.582 | 0.0 | |
| P74423 | 877 | Alanine--tRNA ligase OS=S | N/A | no | 0.894 | 0.734 | 0.573 | 0.0 | |
| Q8DH56 | 882 | Alanine--tRNA ligase OS=T | yes | no | 0.906 | 0.740 | 0.568 | 0.0 |
| >sp|B9HQZ6|SYAP_POPTR Probable alanine--tRNA ligase, chloroplastic OS=Populus trichocarpa GN=POPTRDRAFT_821063 PE=3 SV=1 | Back alignment and function desciption |
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Score = 1214 bits (3141), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 580/718 (80%), Positives = 649/718 (90%), Gaps = 5/718 (0%)
Query: 1 MAHYYPSILPCGHFLFKGATGVP-SARSTSASVQPLTEE-VEDKSQDFPSSGDSIRKRFL 58
+A + PSI PCG+F+ GA AR+T ASVQP+TEE VEDK+++ P SGD+IR+RFL
Sbjct: 49 VALFSPSIFPCGYFILGGARERRFGARNTQASVQPVTEELVEDKTKENPVSGDAIRRRFL 108
Query: 59 DFYASRGHKVLPSASLVPEDPTVLLTIAGMLQFKPIFLGKVPRQVPRAATSQRCIRTNDV 118
+FYASR HKVLPSASLVP+DPTVLLTIAGMLQFKPIFLGK PRQVPRA T+Q+CIRTNDV
Sbjct: 109 EFYASRSHKVLPSASLVPDDPTVLLTIAGMLQFKPIFLGKAPRQVPRATTAQKCIRTNDV 168
Query: 119 ENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAF 178
ENVGRT+RHHTFFEMLGNFSFGDYFKKEAI+WAWE ST EFGLPA+RLW+SVYEDDDEAF
Sbjct: 169 ENVGRTTRHHTFFEMLGNFSFGDYFKKEAIKWAWELSTKEFGLPADRLWVSVYEDDDEAF 228
Query: 179 EIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFI 238
EIW+ EVGVPVE IKRMG +DNFW SGATGPCGPCSE+YYDFHP+RG + DLGDD+RFI
Sbjct: 229 EIWHDEVGVPVERIKRMGEEDNFWTSGATGPCGPCSELYYDFHPERGYKNTDLGDDSRFI 288
Query: 239 EFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNNYETDLIFPIIKKASE 298
EFYNLVFMQYNK DDGSLEPLKQKNIDTGLGLER+ARILQKVPNNYETDLI+PII+KA+E
Sbjct: 289 EFYNLVFMQYNKMDDGSLEPLKQKNIDTGLGLERLARILQKVPNNYETDLIYPIIEKAAE 348
Query: 299 LANVSYAQSNDRTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLL 358
LAN+SYA ++DRT +NLKIIGDHLRAIVYL+SDGV PSNIGRGYVVRRLIRRAVRTGRLL
Sbjct: 349 LANISYALADDRTKMNLKIIGDHLRAIVYLISDGVLPSNIGRGYVVRRLIRRAVRTGRLL 408
Query: 359 GIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEK 418
G+KG G +G FLP+IAEK IELS HID DVKAR IL+EL+REELRFVQTLERGEK
Sbjct: 409 GVKGGGE---DGVFLPAIAEKVIELSPHIDPDVKARGHSILDELQREELRFVQTLERGEK 465
Query: 419 LLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIE 478
LLDQMLA+AL ++S ++P LSG+D FLLYDTFGFPVEIT EVAEE GV +DM GF++E
Sbjct: 466 LLDQMLAEALLNAQKSETLPCLSGKDVFLLYDTFGFPVEITTEVAEEQGVKIDMDGFEVE 525
Query: 479 MENQRRQSQAAHNAVKLSVDDSADLAEKIPDTEFLGYDTLSAKAIVESLLVNGKPVIKVS 538
MENQRRQSQAAHN VKL+V++ DLAE + DTEFLGYDTLSA+A+VESLL+NGK VI+VS
Sbjct: 526 MENQRRQSQAAHNVVKLAVENGGDLAENVHDTEFLGYDTLSARAVVESLLLNGKSVIQVS 585
Query: 539 KGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGSVFVHKGTI 598
+GS+VEVLLN+TPFYAESGGQIGD+GFLYVTQ ++QTAVVE+KDV+KSLGSVFVHKGTI
Sbjct: 586 EGSEVEVLLNKTPFYAESGGQIGDHGFLYVTQDQSKQTAVVEIKDVQKSLGSVFVHKGTI 645
Query: 599 REGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFD 658
REGVLEVGREVEA VD KLRQRAKVHHTATHLLQ+ALKKVIGQETSQAGSLVAFDRLRFD
Sbjct: 646 REGVLEVGREVEAAVDAKLRQRAKVHHTATHLLQSALKKVIGQETSQAGSLVAFDRLRFD 705
Query: 659 FNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMFGEKYGEQVKI 716
FNFHRPL D+ELEEIE LINGWIGD LLQTKVM+L DAK AGAIAMFGEKYGEQV++
Sbjct: 706 FNFHRPLHDSELEEIENLINGWIGDGTLLQTKVMSLTDAKEAGAIAMFGEKYGEQVRV 763
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Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. Populus trichocarpa (taxid: 3694) EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 7 |
| >sp|Q9FFC7|SYAP_ARATH Probable alanine--tRNA ligase, chloroplastic OS=Arabidopsis thaliana GN=EMB86 PE=1 SV=2 | Back alignment and function description |
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| >sp|C5Z7K4|SYAP_SORBI Probable alanine--tRNA ligase, chloroplastic OS=Sorghum bicolor GN=Sb10g008780 PE=3 SV=1 | Back alignment and function description |
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| >sp|B8B4H5|SYAP_ORYSI Probable alanine--tRNA ligase, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_22356 PE=3 SV=1 | Back alignment and function description |
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| >sp|B9FSH5|SYAP_ORYSJ Probable alanine--tRNA ligase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os06g0245800 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q2JLC4|SYA_SYNJB Alanine--tRNA ligase OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=alaS PE=3 SV=1 | Back alignment and function description |
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| >sp|Q2JTG8|SYA_SYNJA Alanine--tRNA ligase OS=Synechococcus sp. (strain JA-3-3Ab) GN=alaS PE=3 SV=1 | Back alignment and function description |
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| >sp|B0JI84|SYA_MICAN Alanine--tRNA ligase OS=Microcystis aeruginosa (strain NIES-843) GN=alaS PE=3 SV=1 | Back alignment and function description |
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| >sp|P74423|SYA_SYNY3 Alanine--tRNA ligase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=alaS PE=3 SV=1 | Back alignment and function description |
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| >sp|Q8DH56|SYA_THEEB Alanine--tRNA ligase OS=Thermosynechococcus elongatus (strain BP-1) GN=alaS PE=3 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 720 | ||||||
| 225428201 | 1006 | PREDICTED: probable alanyl-tRNA syntheta | 0.994 | 0.711 | 0.817 | 0.0 | |
| 224105089 | 994 | predicted protein [Populus trichocarpa] | 0.990 | 0.717 | 0.807 | 0.0 | |
| 449444378 | 956 | PREDICTED: probable alanine--tRNA ligase | 0.986 | 0.742 | 0.784 | 0.0 | |
| 449518200 | 956 | PREDICTED: probable alanine--tRNA ligase | 0.986 | 0.742 | 0.782 | 0.0 | |
| 356516209 | 980 | PREDICTED: probable alanyl-tRNA syntheta | 0.948 | 0.696 | 0.781 | 0.0 | |
| 356509509 | 957 | PREDICTED: probable alanyl-tRNA syntheta | 0.948 | 0.713 | 0.774 | 0.0 | |
| 10177227 | 954 | alanyl-tRNA synthetase [Arabidopsis thal | 0.934 | 0.705 | 0.769 | 0.0 | |
| 30688660 | 978 | alanyl-tRNA synthetase [Arabidopsis thal | 0.934 | 0.688 | 0.769 | 0.0 | |
| 357467609 | 1005 | Alanyl-tRNA synthetase [Medicago truncat | 0.927 | 0.664 | 0.757 | 0.0 | |
| 297812419 | 978 | aminoacyl-tRNA synthetase family protein | 0.955 | 0.703 | 0.750 | 0.0 |
| >gi|225428201|ref|XP_002278951.1| PREDICTED: probable alanyl-tRNA synthetase, chloroplastic [Vitis vinifera] gi|297744517|emb|CBI37779.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1229 bits (3180), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 587/718 (81%), Positives = 645/718 (89%), Gaps = 2/718 (0%)
Query: 1 MAHYYPSILPCGHFLFKGATGVP-SARSTSASVQPLTEE-VEDKSQDFPSSGDSIRKRFL 58
+A PS LPCGH K V + RSTSAS+QP+TEE VEDKS+D P+SGDSIR RFL
Sbjct: 58 LALISPSGLPCGHSNLKQTREVRFTTRSTSASIQPMTEELVEDKSKDLPTSGDSIRHRFL 117
Query: 59 DFYASRGHKVLPSASLVPEDPTVLLTIAGMLQFKPIFLGKVPRQVPRAATSQRCIRTNDV 118
DFYASRGHKVLPS+SLVP+DPTVLLTIAGMLQFKPIFLGKVPRQVPRA T+QRCIRTNDV
Sbjct: 118 DFYASRGHKVLPSSSLVPDDPTVLLTIAGMLQFKPIFLGKVPRQVPRATTAQRCIRTNDV 177
Query: 119 ENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAF 178
ENVG+TSRHHTFFEMLGNFSFGDYFKKEAI+WAWE ST+E+GLPA+RLWISVYEDDDEA
Sbjct: 178 ENVGKTSRHHTFFEMLGNFSFGDYFKKEAIKWAWELSTIEYGLPADRLWISVYEDDDEAL 237
Query: 179 EIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFI 238
IW KEVGVPVE IKRMGA+DNFW SG TGPCGPCSEIYYDFHP+RG SDVDLGDDTRFI
Sbjct: 238 AIWTKEVGVPVERIKRMGAEDNFWTSGVTGPCGPCSEIYYDFHPERGYSDVDLGDDTRFI 297
Query: 239 EFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNNYETDLIFPIIKKASE 298
EFYNLVFMQYNKKDDGSLEPLKQ NIDTGLGLER+ARILQKVPNNYETDLI+PII+KASE
Sbjct: 298 EFYNLVFMQYNKKDDGSLEPLKQMNIDTGLGLERMARILQKVPNNYETDLIYPIIEKASE 357
Query: 299 LANVSYAQSNDRTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLL 358
LANVSYA ++D +NLK+IGDHLRAIVYL+SDGV PSNIGRGYV RRLIRRAVRTGRLL
Sbjct: 358 LANVSYALADDHAKMNLKVIGDHLRAIVYLISDGVVPSNIGRGYVARRLIRRAVRTGRLL 417
Query: 359 GIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEK 418
GIKGDGRGN EGAFLP+IAEK IELS+ ID DVK+R RILEELKREELRFVQTLERGEK
Sbjct: 418 GIKGDGRGNPEGAFLPTIAEKVIELSSQIDPDVKSRAPRILEELKREELRFVQTLERGEK 477
Query: 419 LLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIE 478
LLD+MLA+AL + E+G+ P LSG+D FLLYDT+GFPVEIT E AEE GV +DM GF+IE
Sbjct: 478 LLDEMLANALLNSNENGNGPILSGKDVFLLYDTYGFPVEITTEAAEERGVGIDMNGFEIE 537
Query: 479 MENQRRQSQAAHNAVKLSVDDSADLAEKIPDTEFLGYDTLSAKAIVESLLVNGKPVIKVS 538
MENQRRQSQAAHNAVKL+V +SADL E I DTEFLGY+TLS KA++E LLVNG PVI+VS
Sbjct: 538 MENQRRQSQAAHNAVKLAVGNSADLTENISDTEFLGYETLSTKAVIEGLLVNGNPVIQVS 597
Query: 539 KGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGSVFVHKGTI 598
+GSDVE+ LNRTPFYAESGGQIGD+GFLYV + NQ+ AVVE+KDV+KSLG++FVHKGTI
Sbjct: 598 EGSDVEIFLNRTPFYAESGGQIGDHGFLYVNEDRNQKNAVVEIKDVQKSLGNIFVHKGTI 657
Query: 599 REGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFD 658
+EGV+EVG+EVEA VD LRQRAK+HHTATHLLQAALKKVIG ETSQAGSLVAFDRLRFD
Sbjct: 658 KEGVVEVGKEVEAAVDANLRQRAKIHHTATHLLQAALKKVIGDETSQAGSLVAFDRLRFD 717
Query: 659 FNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMFGEKYGEQVKI 716
FNFHRPL + EL EIE LINGWIGDA LLQTKVM L DAKRAGAIAMFGEKYGEQV++
Sbjct: 718 FNFHRPLQEKELVEIEELINGWIGDATLLQTKVMPLADAKRAGAIAMFGEKYGEQVRV 775
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224105089|ref|XP_002313683.1| predicted protein [Populus trichocarpa] gi|313471500|sp|B9HQZ6.1|SYAP_POPTR RecName: Full=Probable alanine--tRNA ligase, chloroplastic; AltName: Full=Alanyl-tRNA synthetase; Short=AlaRS gi|222850091|gb|EEE87638.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|449444378|ref|XP_004139952.1| PREDICTED: probable alanine--tRNA ligase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449518200|ref|XP_004166131.1| PREDICTED: probable alanine--tRNA ligase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356516209|ref|XP_003526788.1| PREDICTED: probable alanyl-tRNA synthetase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356509509|ref|XP_003523490.1| PREDICTED: probable alanyl-tRNA synthetase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|10177227|dbj|BAB10601.1| alanyl-tRNA synthetase [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|30688660|ref|NP_680210.2| alanyl-tRNA synthetase [Arabidopsis thaliana] gi|322510075|sp|Q9FFC7.2|SYAP_ARATH RecName: Full=Probable alanine--tRNA ligase, chloroplastic; AltName: Full=Alanyl-tRNA synthetase; Short=AlaRS; AltName: Full=Protein EMBRYO DEFECTIVE 1030; AltName: Full=Protein EMBRYO DEFECTIVE 263; AltName: Full=Protein EMBRYO DEFECTIVE 86; Flags: Precursor gi|332005698|gb|AED93081.1| alanyl-tRNA synthetase [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|357467609|ref|XP_003604089.1| Alanyl-tRNA synthetase [Medicago truncatula] gi|355493137|gb|AES74340.1| Alanyl-tRNA synthetase [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|297812419|ref|XP_002874093.1| aminoacyl-tRNA synthetase family protein [Arabidopsis lyrata subsp. lyrata] gi|297319930|gb|EFH50352.1| aminoacyl-tRNA synthetase family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 720 | ||||||
| TAIR|locus:504954871 | 978 | EMB1030 "EMBRYO DEFECTIVE 1030 | 0.959 | 0.706 | 0.739 | 3.7e-277 | |
| TIGR_CMR|CHY_0538 | 874 | CHY_0538 "alanyl-tRNA syntheta | 0.893 | 0.735 | 0.445 | 1.6e-148 | |
| TIGR_CMR|CBU_1052 | 865 | CBU_1052 "alanyl-tRNA syntheta | 0.508 | 0.423 | 0.436 | 4e-136 | |
| TIGR_CMR|GSU_0148 | 875 | GSU_0148 "alanyl-tRNA syntheta | 0.890 | 0.732 | 0.421 | 2e-134 | |
| UNIPROTKB|O07438 | 904 | alaS "Alanine--tRNA ligase" [M | 0.9 | 0.716 | 0.411 | 1.3e-128 | |
| TIGR_CMR|CJE_0613 | 842 | CJE_0613 "alanyl-tRNA syntheta | 0.422 | 0.361 | 0.512 | 1.9e-123 | |
| UNIPROTKB|P00957 | 876 | alaS "alanyl-tRNA synthetase" | 0.677 | 0.557 | 0.474 | 2e-118 | |
| TIGR_CMR|ECH_0981 | 887 | ECH_0981 "alanyl-tRNA syntheta | 0.902 | 0.732 | 0.397 | 2.9e-118 | |
| TIGR_CMR|NSE_0156 | 848 | NSE_0156 "alanyl-tRNA syntheta | 0.556 | 0.472 | 0.417 | 9.8e-116 | |
| UNIPROTKB|Q56648 | 860 | alaS "Alanine--tRNA ligase" [V | 0.690 | 0.577 | 0.458 | 6.4e-115 |
| TAIR|locus:504954871 EMB1030 "EMBRYO DEFECTIVE 1030" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 2664 (942.8 bits), Expect = 3.7e-277, P = 3.7e-277
Identities = 513/694 (73%), Positives = 586/694 (84%)
Query: 25 ARSTSASVQPLTEEVEDKSQDFPSSGDSIRKRFLDFYASRGHKVLPSASLVPEDPTVLLT 84
A+S+S SVQP++E+ ++ Q SGDSIR+RFL+F+ASRGHKVLPS+SLVPEDPTVLLT
Sbjct: 55 AKSSSVSVQPVSEDAKEDYQSKDVSGDSIRRRFLEFFASRGHKVLPSSSLVPEDPTVLLT 114
Query: 85 IAGMLQFKPIFLGKVPRQVPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFGDYFK 144
IAGMLQFKPIFLGKVPR+VP A T+QRCIRTND+ENVG+T+RHHTFFEMLGNFSFGDYFK
Sbjct: 115 IAGMLQFKPIFLGKVPREVPCATTAQRCIRTNDLENVGKTARHHTFFEMLGNFSFGDYFK 174
Query: 145 KEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNS 204
KEAI+WAWE ST+EFGLPANR+W+S+YEDDDEAFEIW EVGV VE IKRMG DNFW S
Sbjct: 175 KEAIKWAWELSTIEFGLPANRVWVSIYEDDDEAFEIWKNEVGVSVERIKRMGEADNFWTS 234
Query: 205 GATGPCGPCSEIYYDFHPDRGCS-DVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKN 263
G TGPCGPCSE+YYDF+P+RG DVDLGDDTRFIEFYNLVFMQYNK +DG LEPLKQKN
Sbjct: 235 GPTGPCGPCSELYYDFYPERGYDEDVDLGDDTRFIEFYNLVFMQYNKTEDGLLEPLKQKN 294
Query: 264 IDTGLGLERIARILQKVPNNYETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLR 323
IDTGLGLERIA+ILQKVPNNYETDLI+PII K SELAN+SY +ND+ +LK+I DH+R
Sbjct: 295 IDTGLGLERIAQILQKVPNNYETDLIYPIIAKISELANISYDSANDKAKTSLKVIADHMR 354
Query: 324 AIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIEL 383
A+VYL+SDGV PSNIGRGYVVRRLIRRAVR G+ LGI GD GNL+GAFLP++AEK IEL
Sbjct: 355 AVVYLISDGVSPSNIGRGYVVRRLIRRAVRKGKSLGINGDMNGNLKGAFLPAVAEKVIEL 414
Query: 384 STHIDSDVKAXXXXXXXXXXXXXXXFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQ 443
ST+IDSDVK F +TLERGEKLLDQ L DALS ++ P L G+
Sbjct: 415 STYIDSDVKLKASRIIEEIRQEELHFKKTLERGEKLLDQKLNDALSIADKTKDTPYLDGK 474
Query: 444 DAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEMENQRRQSQAAHNAVKLSVDDSADL 503
DAFLLYDTFGFPVEIT EVAEE GVS+DM GF++EMENQRRQSQAAHN VKL+V+D AD+
Sbjct: 475 DAFLLYDTFGFPVEITAEVAEERGVSIDMNGFEVEMENQRRQSQAAHNVVKLTVEDDADM 534
Query: 504 AEKIPDTEFLGYDTLSAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDY 563
+ I DTEFLGYD+LSA+A+V+SLLVNGKPVI+VS+GS+VEVLL+RTPFYAESGGQI D+
Sbjct: 535 TKNIADTEFLGYDSLSARAVVKSLLVNGKPVIRVSEGSEVEVLLDRTPFYAESGGQIADH 594
Query: 564 GFLYVTQGTNQQTAVVEVKDVKKSLGSVFVHKGTIXXXXXXXXXXXXAIVDPKLRQRAKV 623
GFLYV+ NQ+ AVVEV DV+KSL +FVHKGT+ A VD LRQRAKV
Sbjct: 595 GFLYVSSDGNQEKAVVEVSDVQKSL-KIFVHKGTVKSGALEVGKEVEAAVDADLRQRAKV 653
Query: 624 HHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGD 683
HHTATHLLQ+ALKKV+GQETSQAGSLVAFDRLRFDFNF+R L D ELEEIE LIN WIGD
Sbjct: 654 HHTATHLLQSALKKVVGQETSQAGSLVAFDRLRFDFNFNRSLHDNELEEIECLINRWIGD 713
Query: 684 ANLLQTKVMALDDAKRAGAIAMFGEKYGE-QVKI 716
A L+TKV+ L DAKRAGAIAMFGEKY E +V++
Sbjct: 714 ATRLETKVLPLADAKRAGAIAMFGEKYDENEVRV 747
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| TIGR_CMR|CHY_0538 CHY_0538 "alanyl-tRNA synthetase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
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| TIGR_CMR|CBU_1052 CBU_1052 "alanyl-tRNA synthetase" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
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| TIGR_CMR|GSU_0148 GSU_0148 "alanyl-tRNA synthetase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
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| UNIPROTKB|O07438 alaS "Alanine--tRNA ligase" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
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| TIGR_CMR|CJE_0613 CJE_0613 "alanyl-tRNA synthetase" [Campylobacter jejuni RM1221 (taxid:195099)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P00957 alaS "alanyl-tRNA synthetase" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
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| TIGR_CMR|ECH_0981 ECH_0981 "alanyl-tRNA synthetase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|NSE_0156 NSE_0156 "alanyl-tRNA synthetase" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q56648 alaS "Alanine--tRNA ligase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q7VEG5 | SYA_PROMA | 6, ., 1, ., 1, ., 7 | 0.5344 | 0.9152 | 0.7387 | yes | no |
| Q015G2 | SYAP_OSTTA | 6, ., 1, ., 1, ., 7 | 0.5652 | 0.9083 | 0.6920 | yes | no |
| Q46I13 | SYA_PROMT | 6, ., 1, ., 1, ., 7 | 0.5326 | 0.9 | 0.7313 | yes | no |
| B1WYQ5 | SYA_CYAA5 | 6, ., 1, ., 1, ., 7 | 0.5710 | 0.8972 | 0.7349 | yes | no |
| Q9FFC7 | SYAP_ARATH | 6, ., 1, ., 1, ., 7 | 0.7699 | 0.9347 | 0.6881 | yes | no |
| Q7U3R9 | SYA_SYNPX | 6, ., 1, ., 1, ., 7 | 0.5562 | 0.8916 | 0.7221 | yes | no |
| B9HQZ6 | SYAP_POPTR | 6, ., 1, ., 1, ., 7 | 0.8077 | 0.9902 | 0.7173 | yes | no |
| Q7V419 | SYA_PROMM | 6, ., 1, ., 1, ., 7 | 0.5397 | 0.8986 | 0.7253 | yes | no |
| Q7NI36 | SYA_GLOVI | 6, ., 1, ., 1, ., 7 | 0.5344 | 0.8902 | 0.7359 | yes | no |
| Q8YUD4 | SYA_NOSS1 | 6, ., 1, ., 1, ., 7 | 0.5695 | 0.9 | 0.7363 | yes | no |
| Q10VG8 | SYA_TRIEI | 6, ., 1, ., 1, ., 7 | 0.5673 | 0.8972 | 0.7391 | yes | no |
| A2BTZ9 | SYA_PROM5 | 6, ., 1, ., 1, ., 7 | 0.5095 | 0.9083 | 0.7381 | yes | no |
| B0JI84 | SYA_MICAN | 6, ., 1, ., 1, ., 7 | 0.5829 | 0.8944 | 0.7368 | yes | no |
| A2CDK7 | SYA_PROM3 | 6, ., 1, ., 1, ., 7 | 0.5427 | 0.8986 | 0.7253 | yes | no |
| B1XP68 | SYA_SYNP2 | 6, ., 1, ., 1, ., 7 | 0.5605 | 0.8944 | 0.7343 | yes | no |
| A8G242 | SYA_PROM2 | 6, ., 1, ., 1, ., 7 | 0.5044 | 0.8902 | 0.7234 | yes | no |
| Q3AGN4 | SYA_SYNSC | 6, ., 1, ., 1, ., 7 | 0.5502 | 0.8916 | 0.7221 | yes | no |
| Q31DD9 | SYA_PROM9 | 6, ., 1, ., 1, ., 7 | 0.5119 | 0.8902 | 0.7234 | yes | no |
| Q2JTG8 | SYA_SYNJA | 6, ., 1, ., 1, ., 7 | 0.5829 | 0.9013 | 0.7349 | yes | no |
| C5Z7K4 | SYAP_SORBI | 6, ., 1, ., 1, ., 7 | 0.7376 | 0.9555 | 0.7159 | N/A | no |
| Q3AVV3 | SYA_SYNS9 | 6, ., 1, ., 1, ., 7 | 0.5440 | 0.8916 | 0.7213 | yes | no |
| A2BNH2 | SYA_PROMS | 6, ., 1, ., 1, ., 7 | 0.5142 | 0.8944 | 0.7268 | yes | no |
| A5GPF9 | SYA_SYNPW | 6, ., 1, ., 1, ., 7 | 0.5592 | 0.8986 | 0.7261 | yes | no |
| Q5N4B5 | SYA_SYNP6 | 6, ., 1, ., 1, ., 7 | 0.5680 | 0.8944 | 0.7351 | yes | no |
| B0CFX4 | SYA_ACAM1 | 6, ., 1, ., 1, ., 7 | 0.5575 | 0.8944 | 0.7376 | yes | no |
| A2BZG2 | SYA_PROM1 | 6, ., 1, ., 1, ., 7 | 0.5317 | 0.8847 | 0.7189 | yes | no |
| Q7V3N0 | SYA_PROMP | 6, ., 1, ., 1, ., 7 | 0.5036 | 0.9083 | 0.7381 | yes | no |
| Q0I6G6 | SYA_SYNS3 | 6, ., 1, ., 1, ., 7 | 0.5635 | 0.8972 | 0.7234 | yes | no |
| Q2JLC4 | SYA_SYNJB | 6, ., 1, ., 1, ., 7 | 0.5720 | 0.9111 | 0.7420 | yes | no |
| A9B9E5 | SYA_PROM4 | 6, ., 1, ., 1, ., 7 | 0.5234 | 0.9166 | 0.7415 | yes | no |
| A3PA95 | SYA_PROM0 | 6, ., 1, ., 1, ., 7 | 0.5104 | 0.8902 | 0.7234 | yes | no |
| B8B4H5 | SYAP_ORYSI | 6, ., 1, ., 1, ., 7 | 0.7518 | 0.9277 | 0.6706 | N/A | no |
| Q31PW3 | SYA_SYNE7 | 6, ., 1, ., 1, ., 7 | 0.5695 | 0.8944 | 0.7351 | yes | no |
| Q8DH56 | SYA_THEEB | 6, ., 1, ., 1, ., 7 | 0.5680 | 0.9069 | 0.7403 | yes | no |
| A5GWM4 | SYA_SYNR3 | 6, ., 1, ., 1, ., 7 | 0.5562 | 0.8916 | 0.7278 | yes | no |
| Q3MGN4 | SYA_ANAVT | 6, ., 1, ., 1, ., 7 | 0.5695 | 0.9 | 0.7363 | yes | no |
| B9FSH5 | SYAP_ORYSJ | 6, ., 1, ., 1, ., 7 | 0.7503 | 0.9277 | 0.7167 | yes | no |
| B2J876 | SYA_NOSP7 | 6, ., 1, ., 1, ., 7 | 0.5680 | 0.9 | 0.7363 | yes | no |
| A4S051 | SYAP_OSTLU | 6, ., 1, ., 1, ., 7 | 0.5570 | 0.9069 | 0.7207 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 6.1.1.7 | 0.914 |
| 3rd Layer | 6.1.1 | 0.921 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
 |
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 | estExt_fgenesh4_pg.C_LG_IX0259 | alanyl-tRNA synthetase (EC-6.1.1.7) (994 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
 | gw1.XI.1444.1 | • | • | • | 0.904 | ||||||
 | gw1.28.724.1 | • | • | • | 0.813 | ||||||
 | estExt_Genewise1_v1.C_LG_II0778 | • | • | • | 0.813 | ||||||
 | fgenesh4_pm.C_LG_IX000007 | • | • | 0.791 | |||||||
 | eugene3.00150799 | • | 0.789 | ||||||||
 | gw1.X.2264.1 | • | • | • | 0.786 | ||||||
 | eugene3.114390001 | • | • | 0.785 | |||||||
 | estExt_Genewise1_v1.C_LG_I8952 | • | 0.784 | ||||||||
 | estExt_Genewise1_v1.C_LG_II3255 | • | • | 0.771 | |||||||
 | gw1.VIII.2106.1 | • | • | • | 0.769 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 720 | |||
| PLN02900 | 936 | PLN02900, PLN02900, alanyl-tRNA synthetase | 0.0 | |
| PRK00252 | 865 | PRK00252, alaS, alanyl-tRNA synthetase; Reviewed | 0.0 | |
| COG0013 | 879 | COG0013, AlaS, Alanyl-tRNA synthetase [Translation | 0.0 | |
| TIGR00344 | 851 | TIGR00344, alaS, alanine--tRNA ligase | 0.0 | |
| pfam01411 | 551 | pfam01411, tRNA-synt_2c, tRNA synthetases class II | 0.0 | |
| cd00673 | 232 | cd00673, AlaRS_core, Alanyl-tRNA synthetase (AlaRS | 1e-131 | |
| PRK01584 | 594 | PRK01584, PRK01584, alanyl-tRNA synthetase; Provis | 1e-123 | |
| PRK13902 | 900 | PRK13902, alaS, alanyl-tRNA synthetase; Provisiona | 4e-93 | |
| TIGR03683 | 902 | TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase | 8e-89 | |
| PRK01584 | 594 | PRK01584, PRK01584, alanyl-tRNA synthetase; Provis | 6e-24 | |
| COG2872 | 241 | COG2872, COG2872, Predicted metal-dependent hydrol | 2e-16 | |
| PLN02961 | 223 | PLN02961, PLN02961, alanine-tRNA ligase | 4e-07 |
| >gnl|CDD|215487 PLN02900, PLN02900, alanyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 1058 bits (2737), Expect = 0.0
Identities = 339/711 (47%), Positives = 462/711 (64%), Gaps = 51/711 (7%)
Query: 39 VEDKSQDFPSSGDSIRKRFLDFYASRGHKVLPSASLVP-EDPTVLLTIAGMLQFKPIFLG 97
ED + + GD IR+ FL F+ S+GH LPS+ LVP +DPT+L T AGM QFKPIFLG
Sbjct: 2 PEDDAPEKEWPGDRIRRTFLSFFESKGHTFLPSSPLVPVDDPTLLFTNAGMNQFKPIFLG 61
Query: 98 KV-----PRQVPRAATSQRCIRT----NDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAI 148
R++PRA +Q+CIR ND+++VG+ + HHTFFEMLGN+SFGDYFKKEAI
Sbjct: 62 TADPNTPLRKLPRATNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAI 121
Query: 149 QWAWEFSTVEFGLPANRLWISVYEDDD------EAFEIWNKEVGVPVEHIKRMGADDNFW 202
WAWE T +GLPA+RL+ + + D+ EA IW + P E + G DNFW
Sbjct: 122 GWAWELLTKVYGLPADRLYATYFGGDEKQAPDDEARAIWLDYL--PEERVLPFGCKDNFW 179
Query: 203 NSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQK 262
G TGPCGPCSEI+YD +R +D+ DD RFIE +NLVF+Q+N++ DGSL+PL K
Sbjct: 180 EMGDTGPCGPCSEIHYDRIGERDAADLVNNDDPRFIEIWNLVFIQFNREADGSLKPLPAK 239
Query: 263 NIDTGLGLERIARILQKVPNNYETDLIFPIIKKASE------LANVSYAQSNDRTNLNLK 316
++DTG+GLER+A ILQ P+NY+TDL PI E A A+ +DR ++ +
Sbjct: 240 HVDTGMGLERLASILQNKPSNYDTDLFMPIFDAIQEATGARPYAGKVGAEDDDRVDMAYR 299
Query: 317 IIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSI 376
++ DH+R + + ++DGV PSN GRGYV+RRL+RRAVR GRLL E F P++
Sbjct: 300 VVADHIRTLSFAIADGVVPSNEGRGYVLRRLLRRAVRYGRLL-------LGAEEGFFPAL 352
Query: 377 AEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEKLLDQMLADALSRTRESGS 436
E +ELS + +VK E+RI E + EEL F +TLE+G + + LA A +
Sbjct: 353 VEVVVELSGDVFPEVKKNEKRITEIIAEEELSFGKTLEKGIEKFKKALAAAKANGG---- 408
Query: 437 VPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEMENQRRQSQAAHN----- 491
P LSG+DAFLLYDT+GFPV++T+ +AEE GV+VDM+GF+ ME R +S+AAH
Sbjct: 409 -PVLSGKDAFLLYDTYGFPVDLTELMAEERGVTVDMEGFEAAMEEARERSRAAHLKAGGG 467
Query: 492 AVKLSVDDSADLAEK--IPDTEFLGYDTLS-AKAIVESLLVNGKPVIKVSKGSDVEVLLN 548
A++L+ + ++ L ++ +FL YD LS +A+V+++L G V VS+G +V ++L+
Sbjct: 468 AIELAAEATSWLQKQGVAATDDFLKYDWLSDHEAVVKAILTGGGFVESVSEGDEVGIVLD 527
Query: 549 RTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGSVFVHKGTIREGVLEVGRE 608
+T FYAESGGQIGD G L + G AVVEV DV+K+ G +H GT+ EG + VG
Sbjct: 528 KTSFYAESGGQIGDTGVLEGSGG-----AVVEVSDVQKA-GGFVLHIGTVTEGSVSVGDA 581
Query: 609 VEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDT 668
V VD R+R +HTATHLL +ALK+V+G Q GSLVAF++LRFDF+ +P+
Sbjct: 582 VTCKVDYDRRRRIAPNHTATHLLNSALKEVLGDHVDQKGSLVAFEKLRFDFSHGKPMTPE 641
Query: 669 ELEEIERLINGWIGDANLLQTKVMALDDAKR-AGAIAMFGEKYGEQVKISS 718
EL E+E L+N WIGDA ++ K M L DAKR G A+FGEKY + V++ S
Sbjct: 642 ELREVESLVNEWIGDALPVEAKEMPLADAKRINGLRAVFGEKYPDPVRVVS 692
|
Length = 936 |
| >gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >gnl|CDD|232931 TIGR00344, alaS, alanine--tRNA ligase | Back alignment and domain information |
|---|
| >gnl|CDD|216484 pfam01411, tRNA-synt_2c, tRNA synthetases class II (A) | Back alignment and domain information |
|---|
| >gnl|CDD|238360 cd00673, AlaRS_core, Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|234962 PRK01584, PRK01584, alanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237551 PRK13902, alaS, alanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|234309 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase | Back alignment and domain information |
|---|
| >gnl|CDD|234962 PRK01584, PRK01584, alanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|225427 COG2872, COG2872, Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|178546 PLN02961, PLN02961, alanine-tRNA ligase | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 720 | |||
| COG0013 | 879 | AlaS Alanyl-tRNA synthetase [Translation, ribosoma | 100.0 | |
| TIGR00344 | 851 | alaS alanine--tRNA ligase. The model describes ala | 100.0 | |
| PLN02900 | 936 | alanyl-tRNA synthetase | 100.0 | |
| PRK00252 | 865 | alaS alanyl-tRNA synthetase; Reviewed | 100.0 | |
| KOG0188 | 895 | consensus Alanyl-tRNA synthetase [Translation, rib | 100.0 | |
| TIGR03683 | 902 | A-tRNA_syn_arch alanyl-tRNA synthetase. This famil | 100.0 | |
| PRK13902 | 900 | alaS alanyl-tRNA synthetase; Provisional | 100.0 | |
| PRK01584 | 594 | alanyl-tRNA synthetase; Provisional | 100.0 | |
| PF01411 | 552 | tRNA-synt_2c: tRNA synthetases class II (A); Inter | 100.0 | |
| cd00673 | 232 | AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II | 100.0 | |
| PLN02961 | 223 | alanine-tRNA ligase | 100.0 | |
| COG2872 | 241 | Predicted metal-dependent hydrolases related to al | 100.0 | |
| KOG2105 | 415 | consensus Predicted metal-dependent hydrolase, con | 99.81 | |
| PLN02837 | 614 | threonine-tRNA ligase | 99.07 | |
| PRK12305 | 575 | thrS threonyl-tRNA synthetase; Reviewed | 98.96 | |
| TIGR00418 | 563 | thrS threonyl-tRNA synthetase. This model represen | 98.84 | |
| PRK00413 | 638 | thrS threonyl-tRNA synthetase; Reviewed | 98.84 | |
| PRK12444 | 639 | threonyl-tRNA synthetase; Reviewed | 98.58 | |
| PLN02908 | 686 | threonyl-tRNA synthetase | 97.86 | |
| COG0441 | 589 | ThrS Threonyl-tRNA synthetase [Translation, riboso | 97.4 | |
| PRK09348 | 283 | glyQ glycyl-tRNA synthetase subunit alpha; Validat | 96.84 | |
| TIGR00388 | 293 | glyQ glycyl-tRNA synthetase, tetrameric type, alph | 96.32 | |
| cd00768 | 211 | class_II_aaRS-like_core Class II tRNA amino-acyl s | 96.03 | |
| cd00733 | 279 | GlyRS_alpha_core Class II Glycyl-tRNA synthetase ( | 95.86 | |
| PRK14908 | 1000 | glycyl-tRNA synthetase; Provisional | 95.75 | |
| PF01411 | 552 | tRNA-synt_2c: tRNA synthetases class II (A); Inter | 94.49 | |
| PF02091 | 284 | tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit | 93.51 | |
| COG0752 | 298 | GlyQ Glycyl-tRNA synthetase, alpha subunit [Transl | 92.53 | |
| cd00776 | 322 | AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class | 91.49 | |
| TIGR00458 | 428 | aspS_arch aspartyl-tRNA synthetase, archaeal type. | 90.96 | |
| PRK09350 | 306 | poxB regulator PoxA; Provisional | 88.48 | |
| cd00669 | 269 | Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl | 88.05 | |
| cd00775 | 329 | LysRS_core Lys_tRNA synthetase (LysRS) class II co | 84.89 | |
| TIGR00499 | 496 | lysS_bact lysyl-tRNA synthetase, eukaryotic and no | 84.15 | |
| PRK00488 | 339 | pheS phenylalanyl-tRNA synthetase subunit alpha; V | 82.76 |
| >COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-223 Score=1909.28 Aligned_cols=650 Identities=52% Similarity=0.903 Sum_probs=617.7
Q ss_pred CCCChHHHHHHHHHHHhhCCCeeecCccCcC-CCCccceecccccCcccccccCCCCCCCCcccccCcccCCCccccCCC
Q 004997 46 FPSSGDSIRKRFLDFYASRGHKVLPSASLVP-EDPTVLLTIAGMLQFKPIFLGKVPRQVPRAATSQRCIRTNDVENVGRT 124 (720)
Q Consensus 46 ~~~~~~eiR~~Fl~fF~~~gH~~v~ssslvp-~DptllFtnAGM~qFkp~flG~~~p~~~r~~~~QkCiR~nDld~VG~t 124 (720)
.+||++|||++||+||++|||+++||||||| +|||||||||||+||||||+|.++||++|+||||||||+|||||||+|
T Consensus 4 ~~~t~~EiR~~FL~FF~~kgH~~v~s~slVP~nDptLLftnAGm~~FK~~f~g~v~p~~~r~~~sQkcIR~NDieNVG~T 83 (879)
T COG0013 4 MKLTTNEIRQKFLDFFEKKGHTVVPSSPLVPRNDPTLLFTNAGMVQFKPYFTGGVTPPANRAVTSQKCIRTNDIDNVGYT 83 (879)
T ss_pred ccCCHHHHHHHHHHHHHHCCCeecCCCCcCCCCCCCeEEeecccccchhhhcCCCCCCCCCeeccccccccCchhhcCcc
Confidence 3599999999999999999999999999999 799999999999999999999999999999999999999999999999
Q ss_pred CCcccccccccCCccCcccHHHHHHHHHHHhhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCceeccCCCCCccCC
Q 004997 125 SRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNS 204 (720)
Q Consensus 125 ~rHhTfFEMLGn~SFgdYfK~eai~~awe~Lt~~l~i~~~rL~vTv~~~D~e~~~iW~~~~g~~~~rI~~~~~~dNfW~~ 204 (720)
+|||||||||||||||||||+|||+|||||||++|||||+|||||||++|+||+++|++.+|||++||++++.+||||+|
T Consensus 84 ~RHhTfFEMLGNfSFGdYFKeeAI~~AwEflT~~lgl~~ekL~vtvy~~Ddea~~~W~~~~gip~~rIir~~~~dNfW~~ 163 (879)
T COG0013 84 ARHHTFFEMLGNFSFGDYFKEEAIEFAWEFLTKVLGLPKEKLYVTVYEDDDEAYNEWEKIIGIPPERIIRIGASDNFWEM 163 (879)
T ss_pred ccchhHHHhhhcCchhHHHHHHHHHHHHHHHHhhcCCCHHHEEEEEecCchHHHHHHHhhcCCCHHHeeecCcCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceEEEeecCCCCCCCCCCC--CCCCceEEEeeeeccccccc-CCCccccCccCcccccchHHHHHHHHhcCC
Q 004997 205 GATGPCGPCSEIYYDFHPDRGCSDVDL--GDDTRFIEFYNLVFMQYNKK-DDGSLEPLKQKNIDTGLGLERIARILQKVP 281 (720)
Q Consensus 205 G~~GpcGPcsEI~yd~g~~~~~~~~~~--~~~~r~lEiwNlVFmq~~r~-~dG~l~~Lp~k~IDTGmGLERl~~vlqg~~ 281 (720)
|+ ||||||||||||+|+.++++.+.. .+++|||||||||||||||+ .+|+|.|||+||||||||||||+|||||+|
T Consensus 164 G~-GPcGPcsEI~yD~G~~~~~~~~~~~~~d~dR~lEiwNLVFmQfnr~~~~g~~~~Lp~k~IDTGmGLERi~~vlQ~~~ 242 (879)
T COG0013 164 GD-GPCGPCSEIFYDRGEEIGGGPPGSPDEDGDRYLEIWNLVFMQYNRDPGDGNYTPLPKKNIDTGMGLERIAAVLQGVP 242 (879)
T ss_pred CC-cCCCCceEEEEcCCcccCCCCCCCcCCCCCceEEEeeeeehhhccCCCCCCcccCCCCCcccCccHHHHHHHHcCCC
Confidence 99 999999999999999999877743 88999999999999999999 799999999999999999999999999999
Q ss_pred CcccccccHHHHHHHHHHhCCCccCCccccccceEEeehhhhhHHHhhhCCCccCCCCCchHHHHHHHHHHHHHHHhCCC
Q 004997 282 NNYETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIK 361 (720)
Q Consensus 282 s~ydtD~F~p~i~~i~~~~g~~y~~~~~~~~~~~rviaDH~R~~~~~i~DGv~Psn~grGYvlRrilRRA~r~~~~lg~~ 361 (720)
||||||+|.|||+.+++++|..|..+....++++||||||+||++|||+|||+|||+|||||||||||||+|++++||++
T Consensus 243 tnyd~dlf~~ii~~~e~~~g~~~~~~~~~~~~s~rVIADH~Rs~~f~iaDGv~PSNegrGYvlRriiRRa~R~~~~LG~~ 322 (879)
T COG0013 243 TNYDTDLFRPIIKAIEKLTGKKYGEDEEDPDVSFRVIADHIRSLAFMIADGVLPSNEGRGYVLRRIIRRALRHGKLLGIK 322 (879)
T ss_pred cchhhhhhHHHHHHHHHHhCCcCCccccccceeEEEehhHHHHHHHHHhCCCCcCCCCccHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999776533488999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccchHHHHHHHHHHhccCChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCC
Q 004997 362 GDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEKLLDQMLADALSRTRESGSVPRLS 441 (720)
Q Consensus 362 ~~~~~~~~~~fl~~Lv~~vi~~m~~~YPeL~~~~~~I~~vi~~EE~~F~~tL~~G~~~l~~~i~~~~~~~~~~g~~~~l~ 441 (720)
.| ||++|||.+++.|+++||||+++++.|+++|+.||++|.+||++|+++|+++++ ++++ + ++||
T Consensus 323 ~~--------fl~~LV~~~~~~m~~~ypel~~~~~~I~~vl~~EEe~F~~TL~~G~~l~~~~~~----~~~~-~--~~l~ 387 (879)
T COG0013 323 EP--------FLYKLVDTVIDEMGDAYPELKEKEDFIKEVLKLEEERFAKTLERGLKLLEKELA----KLKK-S--KTLD 387 (879)
T ss_pred ch--------HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhcc-C--CccC
Confidence 99 999999999999999999999999999999999999999999999999999998 6654 3 5899
Q ss_pred hHHHHHHHhhcCCChhhHHHHHHHcCCccChhhHHHHHHHHHHHHHHhhcccccccCCh--hHHhhhCCCCccccccccc
Q 004997 442 GQDAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEMENQRRQSQAAHNAVKLSVDDS--ADLAEKIPDTEFLGYDTLS 519 (720)
Q Consensus 442 g~~af~LyDTyGfP~dlt~~ia~e~gl~vD~~~F~~~m~~qk~~sr~~~~~~~~~~~~~--~~l~~~~~~T~f~gY~~~~ 519 (720)
|++||+||||||||+|||++||+|+|++||+++|+.+|++||++||+++ .+....... ..+.+..++|+|+||++++
T Consensus 388 ge~afkLYDTyGfP~eLt~eia~e~g~~VD~~~f~~~m~~qr~~ar~~~-~~~~~~~~~~~~~~~~~~~~tef~gY~~~~ 466 (879)
T COG0013 388 GEDAFKLYDTYGFPVELTEEIAEERGLKVDEPGFEYAMEAQRERARASA-GSGEGAKESEDLELIDKLPETEFLGYDDLE 466 (879)
T ss_pred hHHheeehhcCCCCHHHHHHHHHHcCCeeccccHHHHHHHHHHHhhhcc-ccccccchhhhhhhhccCCCceeeeccccc
Confidence 9999999999999999999999999999999999999999999999765 222111111 1223346789999999999
Q ss_pred cceEEEEEEeCCeeeeeecCCCeEEEEecCcceecCCCCCCCCeEEEEeCC-CcccccceEEEEEEEEecCCEEEEEEEe
Q 004997 520 AKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQ-GTNQQTAVVEVKDVKKSLGSVFVHKGTI 598 (720)
Q Consensus 520 ~~akVl~i~~~~~~v~~~~~g~~~~VvLD~T~FYpEgGGQ~~D~G~I~~~~-~~~~~~~~~~V~dV~k~~~g~ivH~~~~ 598 (720)
++++|+.++.+++.|+++++|++++||||+||||||||||++|+|+|..++ . .+.|.||||.+++.++|.+..
T Consensus 467 ~~~~i~~l~~~~~~v~~~~~g~~~~vVld~TpFYaEsGGQ~~D~G~i~~~~~~------~~~V~dvqK~~~~~~vH~~~~ 540 (879)
T COG0013 467 MEFKVLVLFVDGKEVSELNEGQEVYVVLDQTPFYAESGGQVGDTGYIFGDGGG------RFEVTDVQKVGNGVIVHKGKV 540 (879)
T ss_pred ceEEEEEEEecCcccccccCCceEEEEEecCCccCCCCCccCceEEEEecCCc------EEEEEEEEEcCCceEEEEEee
Confidence 999999999888769999999999999999999999999999999999874 5 899999999955999999998
Q ss_pred eccccCCCCEEEEEEchhhhhhHhhhCcHHHHHHHHHHhHhCCceeeeeeeccCCceEEEEecCCCCCHHHHHHHHHHHH
Q 004997 599 REGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLIN 678 (720)
Q Consensus 599 ~~g~l~~Gd~V~~~VD~~rR~~~mr~HTAtHLL~aaLr~vlG~~v~q~Gs~v~~d~~R~DF~~~~~lt~eel~~IE~~vN 678 (720)
..|.+++|+.|.++|||+||+.+|+|||||||||+|||++||.|++|+||+++++++||||+|++++|+|||++||++||
T Consensus 541 ~~G~l~~gd~V~~~vD~~rR~~~~~nHTATHLLh~ALr~VLG~hV~QaGSlv~~~~lRfDfsH~~~it~Eel~~IE~~vN 620 (879)
T COG0013 541 ESGELKVGDEVTAEVDEERRRRLMRNHTATHLLHAALRKVLGDHVWQAGSLVDPEKLRFDFSHYKALTAEELKEIERLVN 620 (879)
T ss_pred ccCccCCCCEEEEEECHHHHHHHHhhChHHHHHHHHHHHHhCccceecCcccCCCeeEEeecCCCCCCHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCEEEEEcCHHHHHhcCcccccCCcCCCceEEEe
Q 004997 679 GWIGDANLLQTKVMALDDAKRAGAIAMFGEKYGEQVKISS 718 (720)
Q Consensus 679 e~I~~~~pV~~~~~~~eeA~~~g~~alf~eky~d~VRVV~ 718 (720)
++|++|+||++.+|++++|++.|++++|||+||+.||||+
T Consensus 621 e~I~~n~~V~~~~m~~~eAk~~Ga~alfGekY~~~VRVV~ 660 (879)
T COG0013 621 EIIRENLPVKTEEMDLDEAKAKGAMALFGEKYGDEVRVVE 660 (879)
T ss_pred HHHHcCCceeEEEccHHHHHHhChHhhcCCcCCCeEEEEE
Confidence 9999999999999999999999999999999999999997
|
|
| >TIGR00344 alaS alanine--tRNA ligase | Back alignment and domain information |
|---|
| >PLN02900 alanyl-tRNA synthetase | Back alignment and domain information |
|---|
| >PRK00252 alaS alanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >KOG0188 consensus Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase | Back alignment and domain information |
|---|
| >PRK13902 alaS alanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >PRK01584 alanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
| >cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain | Back alignment and domain information |
|---|
| >PLN02961 alanine-tRNA ligase | Back alignment and domain information |
|---|
| >COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only] | Back alignment and domain information |
|---|
| >KOG2105 consensus Predicted metal-dependent hydrolase, contains AlaS domain [General function prediction only] | Back alignment and domain information |
|---|
| >PLN02837 threonine-tRNA ligase | Back alignment and domain information |
|---|
| >PRK12305 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >TIGR00418 thrS threonyl-tRNA synthetase | Back alignment and domain information |
|---|
| >PRK00413 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >PRK12444 threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >PLN02908 threonyl-tRNA synthetase | Back alignment and domain information |
|---|
| >COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
| >TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit | Back alignment and domain information |
|---|
| >cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain | Back alignment and domain information |
|---|
| >cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain | Back alignment and domain information |
|---|
| >PRK14908 glycyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
| >PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
| >COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain | Back alignment and domain information |
|---|
| >TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type | Back alignment and domain information |
|---|
| >PRK09350 poxB regulator PoxA; Provisional | Back alignment and domain information |
|---|
| >cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
| >cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain | Back alignment and domain information |
|---|
| >TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial | Back alignment and domain information |
|---|
| >PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 720 | ||||
| 3hxu_A | 441 | Crystal Structure Of Catalytic Fragment Of E. Coli | 1e-115 | ||
| 3hxz_A | 441 | Crystal Structure Of Catalytic Fragment Of E. Coli | 1e-114 | ||
| 1yfr_A | 465 | Crystal Structure Of Alanyl-Trna Synthetase In Comp | 1e-112 | ||
| 3htz_A | 464 | Crystal Structure Of The Catalytic Fragment Of Alan | 1e-112 | ||
| 1riq_A | 465 | The Crystal Structure Of The Catalytic Fragment Of | 1e-104 | ||
| 2zzf_A | 752 | Crystal Structure Of Alanyl-Trna Synthetase Without | 4e-45 | ||
| 2zze_A | 752 | Crystal Structure Of Alanyl-Trna Synthetase Without | 5e-36 | ||
| 2ztg_A | 739 | Crystal Structure Of Archaeoglobus Fulgidus Alanyl- | 1e-34 |
| >pdb|3HXU|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars In Complex With Alasa Length = 441 | Back alignment and structure |
|
| >pdb|3HXZ|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars G237a In Complex With Alasa Length = 441 | Back alignment and structure |
| >pdb|1YFR|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex With Atp And Magnesium Length = 465 | Back alignment and structure |
| >pdb|3HTZ|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna Synthetase In Complex With L-Serine: Re-Refined Length = 464 | Back alignment and structure |
| >pdb|1RIQ|A Chain A, The Crystal Structure Of The Catalytic Fragment Of The Alanyl-Trna Synthetase Length = 465 | Back alignment and structure |
| >pdb|2ZZF|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without Oligomerization Domain Length = 752 | Back alignment and structure |
| >pdb|2ZZE|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without Oligomerization Domain In Lysine-Methylated Form Length = 752 | Back alignment and structure |
| >pdb|2ZTG|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna Synthetase Lacking The C-Terminal Dimerization Domain In Complex With Ala-Sa Length = 739 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A Length = 465 | Back alignment and structure |
|---|
Score = 707 bits (1827), Expect = 0.0
Identities = 209/480 (43%), Positives = 298/480 (62%), Gaps = 27/480 (5%)
Query: 49 SGDSIRKRFLDFYASRGHKVLPSASLVPE-DPTVLLTIAGMLQFKPIFLGKVPRQVPRAA 107
S IR+ FL F+ +GH + SA LVPE DPT+L AGM+ FK +FLG R RA
Sbjct: 4 SAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRAT 63
Query: 108 TSQRCIRT----NDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPA 163
+ Q+C+R ND+E VG TSRHHTFFEMLGNFSFGDYFKKEAI++AWEF T LP
Sbjct: 64 SCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPK 123
Query: 164 NRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPD 223
+L++SVY+DD+EA+ IWN+ +G+P E I R+G +DNFW G GPCGP SEIY D +
Sbjct: 124 EKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEE 183
Query: 224 RGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNN 283
+ R++E +NLVFMQYN+ ++G L PL NIDTG+GLERIA +LQ +N
Sbjct: 184 YEGDE-------RYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNSN 236
Query: 284 YETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYV 343
+E D+IFP+I+ E++ Y + T++ L++I DHLRAI + +SDGV PSN GRGYV
Sbjct: 237 FEIDIIFPLIQFGEEVSGKKYGE-KFETDVALRVIADHLRAITFAISDGVIPSNEGRGYV 295
Query: 344 VRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELK 403
+RR++RRA+R G LGI+ FL + +++ +++ + + +K
Sbjct: 296 IRRILRRAMRFGYKLGIE--------NPFLYKGVDLVVDIMKEPYPELELSREFVKGIVK 347
Query: 404 REELRFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVA 463
EE RF++TL+ G + + +++ AL R+ LSG++ F YDT+GFPV++ E+A
Sbjct: 348 GEEKRFIKTLKAGMEYIQEVIQKALEEGRK-----TLSGKEVFTAYDTYGFPVDLIDEIA 402
Query: 464 EEHGVSVDMKGFDIEMENQRRQSQAAHNAVKLSVD-DSADLAEKIPDTEFLGYDTLSAKA 522
E G+ +D++GF E+E QR +++ V + L E + F+G L
Sbjct: 403 REKGLGIDLEGFQCELEEQRERARKHFKVEAKKVKPVYSHLKELGKTSAFVGAAALEHHH 462
|
| >2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} Length = 739 | Back alignment and structure |
|---|
| >3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* Length = 441 | Back alignment and structure |
|---|
| >2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* Length = 752 | Back alignment and structure |
|---|
| >2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2 Length = 216 | Back alignment and structure |
|---|
| >3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens} Length = 241 | Back alignment and structure |
|---|
| >1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A Length = 157 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 720 | |||
| 2zze_A | 752 | Alanyl-tRNA synthetase; ligase, hydrolase; HET: ML | 100.0 | |
| 2ztg_A | 739 | Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy | 100.0 | |
| 1yfs_A | 465 | Alanyl-tRNA synthetase; alpha-beta fold, helix-loo | 100.0 | |
| 3hy0_A | 441 | Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 100.0 | |
| 3kew_A | 241 | DHHA1 domain protein; structural genomics, PSI-2, | 100.0 | |
| 2e1b_A | 216 | PH0108, 216AA long hypothetical alanyl-tRNA synthe | 100.0 | |
| 1tke_A | 224 | Threonyl-tRNA synthetase; ligase; 1.46A {Escherich | 99.57 | |
| 1v4p_A | 157 | Alanyl-tRNA synthetase; alanine-tRNA ligase, riken | 99.56 | |
| 1nyr_A | 645 | Threonyl-tRNA synthetase 1; ATP, threonine, ligase | 99.37 | |
| 1qf6_A | 642 | THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m | 99.33 | |
| 3rf1_A | 311 | Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA | 94.92 | |
| 1j5w_A | 298 | Glycyl-tRNA synthetase alpha chain; structural gen | 94.27 | |
| 1nnh_A | 294 | Asparaginyl-tRNA synthetase-related peptide; struc | 92.72 |
| >2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-196 Score=1683.56 Aligned_cols=617 Identities=28% Similarity=0.451 Sum_probs=565.7
Q ss_pred CCcccccceeeeccCCcccccCccccc----CCCchhhcccCCCCCCChHHHHHHHHHHHhhCC---CeeecCccCcC-C
Q 004997 6 PSILPCGHFLFKGATGVPSARSTSASV----QPLTEEVEDKSQDFPSSGDSIRKRFLDFYASRG---HKVLPSASLVP-E 77 (720)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~eiR~~Fl~fF~~~g---H~~v~ssslvp-~ 77 (720)
+.|-.||.+||+.+..|+.|.+..-+. +.|+ ..++||++|||++||+||++|| |++|||||||| +
T Consensus 18 ~~c~~c~~~fwt~~~~r~~cgd~~c~~y~fi~~~~-------~~~~~~~~eiR~~fl~fF~~kg~~~H~~v~s~~lvp~~ 90 (752)
T 2zze_A 18 XXCXVCGXPFWTLDPDRETCGDPPCDEYQFIGKPG-------IPRXYTLDEMREXFLRFFEXHEIYPHGRVXRYPVLPRW 90 (752)
T ss_dssp EECTTTCCEEEESCTTCCSCSSTTTSCCCCTTSCS-------SSSCCCHHHHHHHHHHHHHTCSSSCCEECCCCCSSCTT
T ss_pred eeecccCcceeecCCCcCCCCCCCCCCccccCCCc-------ccccCCHHHHHHHHHHHHhccCCCcceEEeccCcccCC
Confidence 469999999999999999999876543 2222 3358999999999999999999 99999999999 8
Q ss_pred CCccceecccccCcccccc-cCCCCCCCCcccccCcccCCCccccCCCCCcccccccccCCccC-----cccHHHHHHHH
Q 004997 78 DPTVLLTIAGMLQFKPIFL-GKVPRQVPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFG-----DYFKKEAIQWA 151 (720)
Q Consensus 78 DptllFtnAGM~qFkp~fl-G~~~p~~~r~~~~QkCiR~nDld~VG~t~rHhTfFEMLGn~SFg-----dYfK~eai~~a 151 (720)
||||||||||||||||||+ |.++||++|+||||||||+|||||||+|+||||||||||||||| ||||+|||+||
T Consensus 91 dptllftnAGm~~fk~~f~~G~~~pp~~r~~~~QkCiR~~DlenVG~t~rHhTfFEMlGnfSFg~~~~~dYfK~eaI~~a 170 (752)
T 2zze_A 91 RDDVLLVGASIMDFQPWVISGEADPPANPLVISQPSIRFTDIDNVGITGRHFTIFEMMAHHAFNYPGXPIYWMDETVELA 170 (752)
T ss_dssp CSSCSSCCSGGGGGTTHHHHTSSCCSSSSEEEEEEEECCTTGGGTTTSSSCCSEEEEEEEEEEECTTCCCCCHHHHHHHH
T ss_pred CCCeeeeecchhhhhHhhcCCCcCCCCCCccccccceecCcHhhcCCCCcchhHHHhCccceeCCCchHHHHHHHHHHHH
Confidence 9999999999999999997 99999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHhhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCceeccCCCCCccCCCCCCCCCCceEEEeecCCCCCCCCCCC
Q 004997 152 WEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDL 231 (720)
Q Consensus 152 we~Lt~~l~i~~~rL~vTv~~~D~e~~~iW~~~~g~~~~rI~~~~~~dNfW~~G~~GpcGPcsEI~yd~g~~~~~~~~~~ 231 (720)
|||||++||||++||+. +||||+|| ||||||||||||
T Consensus 171 we~lT~~~gl~~~ri~~-----------------------------~dNfW~~G--GpcGPcsEI~~d------------ 207 (752)
T 2zze_A 171 FEFFTKELXMXPEDITF-----------------------------KENPWAGG--GNAGPAFEVLYR------------ 207 (752)
T ss_dssp HHHHHHTSCCCGGGEEE-----------------------------EECCEEET--TEEECEEEEEET------------
T ss_pred HHHHhhhhhcchhheee-----------------------------ccCcccCC--CCCCCceeEEEC------------
Confidence 99999999999999741 68999999 999999999997
Q ss_pred CCCCceEEEeeeecccc-------------cccCCCccccCccCcccccchHHHHHHHHhcCCCcccccccHHHHHHHHH
Q 004997 232 GDDTRFIEFYNLVFMQY-------------NKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNNYETDLIFPIIKKASE 298 (720)
Q Consensus 232 ~~~~r~lEiwNlVFmq~-------------~r~~dG~l~~Lp~k~IDTGmGLERl~~vlqg~~s~ydtD~F~p~i~~i~~ 298 (720)
+||||||||||| +| ++|+|.|||+||||||||||||||||||++||||| +|.|||++|++
T Consensus 208 -----glEiwNlVFmq~~~~~~~~~~~~~~~~-~~g~~~~Lp~~~IDTGmGlERl~~vlQg~~snydt-~f~pii~~~~~ 280 (752)
T 2zze_A 208 -----GLEVATLVFMQYXXAPENAPQDQVVVI-XGEKYIPMETXVVDTGYGLERLVWMSQGTPTAYDA-VLGYVVEPLXX 280 (752)
T ss_dssp -----TEEEEEEEEEEEEECCTTCCSCCEEET-TTEEEEEEEEEEEEEEEEHHHHHHHHHCCSSHHHH-HSHHHHHHHHH
T ss_pred -----CEeeeeeeeeeeccccccccccchhcc-cCCeeeeCCccccccccCHHHHHHHHcCCCchHHH-HHHHHHHHHHH
Confidence 299999999999 88 69999999999999999999999999999999999 99999999999
Q ss_pred HhCCCccC--------------Cccc-c--------------------------ccceEEeehhhhhHHHhhhCCCccCC
Q 004997 299 LANVSYAQ--------------SNDR-T--------------------------NLNLKIIGDHLRAIVYLLSDGVFPSN 337 (720)
Q Consensus 299 ~~g~~y~~--------------~~~~-~--------------------------~~~~rviaDH~R~~~~~i~DGv~Psn 337 (720)
++|++|+. +.+. . ++++||||||+||++|||+||++|||
T Consensus 281 ~~g~~y~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~va~~~~~~~~~~~~~~~~~~~~rvIaDH~R~~~f~i~DGv~PsN 360 (752)
T 2zze_A 281 MAGIEKIDEKILMENSRLAGMFDIEDLGDLRYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLADGVVPSN 360 (752)
T ss_dssp HHTCCCCCHHHHHHHHHHHHTCCSSSSSCHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSS
T ss_pred hcCCCccchhhhhhhhhccccCCccchhhHHHHHHHHHHhcCCCHHHHhhhccccceEEEehhhhhhhhhhcccCCCcCc
Confidence 99999854 2111 1 46999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHHhCCCCCCCCCccccchHHHHHHHHHHhccCChhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004997 338 IGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGE 417 (720)
Q Consensus 338 ~grGYvlRrilRRA~r~~~~lg~~~~~~~~~~~~fl~~Lv~~vi~~m~~~YPeL~~~~~~I~~vi~~EE~~F~~tL~~G~ 417 (720)
+|||||||||||||+|++++||++.| |++||+.|++.|+++||||.++++.|++||+.||++|.+||++|+
T Consensus 361 ~GrGYvlRrilRRa~r~~~~lg~~~~---------l~~lv~~~~~~m~~~ypel~~~~~~I~~vi~~EE~~F~~Tl~~G~ 431 (752)
T 2zze_A 361 VXAGYLARLLIRKSIRHLRELGLEVP---------LSEIVALHIXELHKTFPEFXEMEDIILEMIELEEKXYAETLRRGS 431 (752)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTTCCCC---------HHHHHHHHHHHHTTTCTHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhCCCcc---------hhHHHHHHHHHhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCCChHHHHHHHhhcCCChhhHHHHHHHcCCccChh-hHHHHHHHHHHHHHHhhcccccc
Q 004997 418 KLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMK-GFDIEMENQRRQSQAAHNAVKLS 496 (720)
Q Consensus 418 ~~l~~~i~~~~~~~~~~g~~~~l~g~~af~LyDTyGfP~dlt~~ia~e~gl~vD~~-~F~~~m~~qk~~sr~~~~~~~~~ 496 (720)
++|+++++ +++++|. ++|||++||+||||||||+|||++||+|+|++||++ +|+++|++||+++|++... .
T Consensus 432 ~~l~~~~~----~~~~~~~-~~l~g~~af~LyDTyGfP~dlt~~ia~e~g~~vd~~~~F~~~m~~q~~~~r~~~~~---~ 503 (752)
T 2zze_A 432 DLVRREIA----KLKKKGI-KEIPVEXLVTFYESHGLTPEIVXEIAEKEGVKVNIPDNFYSMVAKEAERTKEEKGE---E 503 (752)
T ss_dssp HHHHHHHH----HHHHHSC-SCCCHHHHHHHHHHHCCCHHHHHHHHTTSSCCCCCCTTHHHHHHGGGGCC----------
T ss_pred HHHHHHHH----HhhhcCC-CccCHHHHHHHHhccCCCHHHHHHHHHHcCCccCCcccHHHHHHHHHHHHhhcccc---c
Confidence 99999998 5544443 579999999999999999999999999999999999 8999999999998865211 1
Q ss_pred cCChhHHhhhCCCCccccccc---cccceEEEEEEeCCeeeeeecCCCeEEEEecCcceecCCCCCCCCeEEEEeCCCcc
Q 004997 497 VDDSADLAEKIPDTEFLGYDT---LSAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTN 573 (720)
Q Consensus 497 ~~~~~~l~~~~~~T~f~gY~~---~~~~akVl~i~~~~~~v~~~~~g~~~~VvLD~T~FYpEgGGQ~~D~G~I~~~~~~~ 573 (720)
..+...+. ..++|+|+||++ .+++|+|+++.. .+||||+|||||||||||+|+|+|..++.
T Consensus 504 ~~~~~~~~-~~~~T~~l~Y~~~yl~~~~a~Vl~i~~-------------~~VVLD~TpFYpEgGGQ~~D~G~I~~~g~-- 567 (752)
T 2zze_A 504 LVDFELLK-DLPDTRRLYYEDPFMXEFDAXVLRVIX-------------DWVILDATAFYPEGGGQPYDTGVLIVNGR-- 567 (752)
T ss_dssp CCCSSSSS-SSCCCEEHHHHCTTCCEEEEEEEEEET-------------TEEEESEECSCCSBTTBCCCCEEEEETTE--
T ss_pred chhhHHhc-cCCCceeecccCCccceEEEEEEEEEc-------------CEEEEeCCCCCCCCCCCCCCEEEEEeCCE--
Confidence 10111121 357899999998 688999999974 26999999999999999999999987655
Q ss_pred cccceEEEEEEEEecCCEEEEEEEeeccccCCCCEEEEEEchhhhhhHhhhCcHHHHHHHHHHhHhCCceeeeeeeccCC
Q 004997 574 QQTAVVEVKDVKKSLGSVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFD 653 (720)
Q Consensus 574 ~~~~~~~V~dV~k~~~g~ivH~~~~~~g~l~~Gd~V~~~VD~~rR~~~mr~HTAtHLL~aaLr~vlG~~v~q~Gs~v~~d 653 (720)
.+.|.+|++. +|.++|.++. .+.+++|++|.++|||+||+.+|++|||+|||++||+++||.|++|+||++.++
T Consensus 568 ----~~~V~dv~k~-~g~ivH~~~~-~~~l~vGd~V~~~VD~~rR~~~mr~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d 641 (752)
T 2zze_A 568 ----EVXVTNVQXV-GXVIIHXVED-PGAFXEGMIVHGXIDWXRRIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTD 641 (752)
T ss_dssp ----EEEEEEEEEE-TTEEEEEESC-GGGCCTTCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECSS
T ss_pred ----EEEEEeeeec-CcEEEEeccc-cCccCcCCeEEEEEeHHHHHHHHHHhHHHHHHHHHHHHHcCCceeeecCcccCC
Confidence 7999999998 8999999975 477899999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEcCHHHHHhcCccccc--CCcCCCceEEEe
Q 004997 654 RLRFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMF--GEKYGEQVKISS 718 (720)
Q Consensus 654 ~~R~DF~~~~~lt~eel~~IE~~vNe~I~~~~pV~~~~~~~eeA~~~g~~alf--~eky~d~VRVV~ 718 (720)
++||||++++++|++++++||+.||++|++++||++.+++++||++.+++++| +++|++.||||+
T Consensus 642 ~~rfDFs~~~~lt~edL~~IE~~vNeiI~~nlpV~~~~~s~eEA~~~~~~~lf~~ge~ygd~VRVV~ 708 (752)
T 2zze_A 642 WARLDISHYXRISEEELXEIEMLANRIVMEDRXVTWEWLPRTTAEQXYGFRLYQGGVVPGREIRVVX 708 (752)
T ss_dssp CEEEEEECSSCCCHHHHHHHHHHHHHHHHHTCBEEEEEEEHHHHHHHHCGGGCSSCCCCSSEEEEEE
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCccceeecCHHHHhhcchhhhhcCCCCCCCeEEEEE
Confidence 99999999999999999999999999999999999999999999999888898 899999999996
|
| >2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
| >1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A | Back alignment and structure |
|---|
| >3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* | Back alignment and structure |
|---|
| >3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens} | Back alignment and structure |
|---|
| >2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2 | Back alignment and structure |
|---|
| >1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A* | Back alignment and structure |
|---|
| >1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A | Back alignment and structure |
|---|
| >1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* | Back alignment and structure |
|---|
| >1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 | Back alignment and structure |
|---|
| >3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A* | Back alignment and structure |
|---|
| >1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1 | Back alignment and structure |
|---|
| >1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 720 | ||||
| d1riqa2 | 236 | d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) | 2e-96 | |
| d1riqa1 | 221 | a.203.1.1 (A:237-457) Putative anticodon-binding d | 2e-48 | |
| d2e1ba1 | 87 | b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-t | 1e-12 | |
| d1v4pa_ | 151 | d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeo | 8e-12 | |
| d2e1ba2 | 129 | d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C | 1e-10 | |
| d1nyra3 | 179 | d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrR | 8e-09 | |
| d1tkea2 | 162 | d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrR | 3e-05 |
| >d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Length = 236 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Alanyl-tRNA synthetase (AlaRS) species: Aquifex aeolicus [TaxId: 63363]
Score = 295 bits (757), Expect = 2e-96
Identities = 129/241 (53%), Positives = 165/241 (68%), Gaps = 12/241 (4%)
Query: 49 SGDSIRKRFLDFYASRGHKVLPSASLVPE-DPTVLLTIAGMLQFKPIFLGKVPRQVPRAA 107
S IR+ FL F+ +GH + SA LVPE DPT+L AGM+ FK +FLG R RA
Sbjct: 3 SAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRAT 62
Query: 108 TSQRCIRT----NDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPA 163
+ Q+C+R ND+E VG TSRHHTFFEMLGNFSFGDYFKKEAI++AWEF T LP
Sbjct: 63 SCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPK 122
Query: 164 NRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPD 223
+L++SVY+DD+EA+ IWN+ +G+P E I R+G +DNFW G GPCGP SEIY D +
Sbjct: 123 EKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEE 182
Query: 224 RGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNN 283
+ R++E +NLVFMQYN+ ++G L PL NIDTG+GLERIA +LQ +N
Sbjct: 183 YEGDE-------RYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNSN 235
Query: 284 Y 284
+
Sbjct: 236 F 236
|
| >d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Length = 221 | Back information, alignment and structure |
|---|
| >d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 87 | Back information, alignment and structure |
|---|
| >d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 151 | Back information, alignment and structure |
|---|
| >d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 129 | Back information, alignment and structure |
|---|
| >d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Staphylococcus aureus [TaxId: 1280]} Length = 179 | Back information, alignment and structure |
|---|
| >d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Escherichia coli [TaxId: 562]} Length = 162 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 720 | |||
| d1riqa2 | 236 | Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [ | 100.0 | |
| d1riqa1 | 221 | Putative anticodon-binding domain of alanyl-tRNA s | 100.0 | |
| d2e1ba2 | 129 | AlaX-M trans-editing enzyme, C-terminal domain {Py | 99.73 | |
| d2e1ba1 | 87 | AlaX-M trans-editing enzyme, N-terminal domain {Py | 99.73 | |
| d1v4pa_ | 151 | Hypothetical protein PH0574 {Archaeon Pyrococcus h | 99.66 | |
| d1nyra3 | 179 | Threonyl-tRNA synthetase (ThrRS), second 'addition | 99.59 | |
| d1tkea2 | 162 | Threonyl-tRNA synthetase (ThrRS), second 'addition | 98.94 | |
| d1j5wa_ | 281 | Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermo | 96.74 | |
| d1jjca_ | 266 | Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS | 80.11 |
| >d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Alanyl-tRNA synthetase (AlaRS) species: Aquifex aeolicus [TaxId: 63363]
Probab=100.00 E-value=8.5e-110 Score=839.70 Aligned_cols=231 Identities=56% Similarity=1.032 Sum_probs=225.7
Q ss_pred CCChHHHHHHHHHHHhhCCCeeecCccCcC-CCCccceecccccCcccccccCCCCCCCCcccccCcccC----CCcccc
Q 004997 47 PSSGDSIRKRFLDFYASRGHKVLPSASLVP-EDPTVLLTIAGMLQFKPIFLGKVPRQVPRAATSQRCIRT----NDVENV 121 (720)
Q Consensus 47 ~~~~~eiR~~Fl~fF~~~gH~~v~ssslvp-~DptllFtnAGM~qFkp~flG~~~p~~~r~~~~QkCiR~----nDld~V 121 (720)
.||++|||++||+||++|||++|||||||| +|||||||||||+||||||+|.++||++|+|++|||||+ ||||||
T Consensus 1 ~mt~~eiR~~Fl~FF~~~gH~~v~s~slvp~~DptlLFtnAGM~~Fkp~flG~~~p~~~r~~~~QkCiR~~gk~nDld~V 80 (236)
T d1riqa2 1 SLSAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRATSCQKCLRVSGKHNDLEQV 80 (236)
T ss_dssp CCCHHHHHHHHHHHHHHTTCEECCCCCSSCTTCTTCSSCCSTTGGGHHHHTTSSCCSCSEEEEEEEEECEETTEECTTTT
T ss_pred CCCHHHHHHHHHHHHHhCCCEEcCCCCcccCCCCCeeeecccchhhhhhhcCccccCCCccccccccccccCccchhhhc
Confidence 489999999999999999999999999999 799999999999999999999999999999999999999 899999
Q ss_pred CCCCCcccccccccCCccCcccHHHHHHHHHHHhhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCceeccCCCCCc
Q 004997 122 GRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNF 201 (720)
Q Consensus 122 G~t~rHhTfFEMLGn~SFgdYfK~eai~~awe~Lt~~l~i~~~rL~vTv~~~D~e~~~iW~~~~g~~~~rI~~~~~~dNf 201 (720)
|+|+|||||||||||||||||||+|||.|||||||++|||||+|||||||++|+||++||.+.+|||++||++++.+|||
T Consensus 81 G~t~rH~TfFEMLGn~SFgdYfK~eai~~awe~lt~~l~l~~~rl~vtv~~~D~e~~~~w~~~~gi~~~rI~~~~~~dNf 160 (236)
T d1riqa2 81 GYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNF 160 (236)
T ss_dssp TTSSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHHTSCCCGGGEEEEEETTCHHHHHHHHTTTCCCGGGEEEECHHHHE
T ss_pred CCcccchhhhhhccccccCchhHHHHHHHHHHHHHHHhccCccceEEEeecCcHHHHHHHHhhcCcccccceecCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCceEEEeecCCCCCCCCCCCCCCCceEEEeeeecccccccCCCccccCccCcccccchHHHHHHHHhcCC
Q 004997 202 WNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVP 281 (720)
Q Consensus 202 W~~G~~GpcGPcsEI~yd~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~r~~dG~l~~Lp~k~IDTGmGLERl~~vlqg~~ 281 (720)
|+||++||||||||||||+|+.. ++++|||||||||||||+|+++|++.|||+|+||||||||||||||||++
T Consensus 161 W~~g~~GpcGPcsEi~yd~g~~~-------~~~~r~lEIwNlVFmqy~~~~~G~~~~L~~k~IDTGmGLERi~~vlqg~~ 233 (236)
T d1riqa2 161 WQMGDVGPCGPSSEIYVDRGEEY-------EGDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKN 233 (236)
T ss_dssp EESSSSEEEEEEEEEEEECCTTS-------CHHHHEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEHHHHHHHHTTCS
T ss_pred cccCCCCCCCcceeEEEcccccc-------CCCCceeeeeeeeheeeeecCCCccccCCCCcccCCccHHHHHHHHcCCC
Confidence 99999999999999999998664 34689999999999999999999999999999999999999999999999
Q ss_pred Ccc
Q 004997 282 NNY 284 (720)
Q Consensus 282 s~y 284 (720)
|||
T Consensus 234 s~y 236 (236)
T d1riqa2 234 SNF 236 (236)
T ss_dssp SGG
T ss_pred CCC
Confidence 998
|
| >d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
| >d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
| >d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
| >d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
| >d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1j5wa_ d.104.1.1 (A:) Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|