Citrus Sinensis ID: 005000
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 720 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LSB8 | 687 | Putative pentatricopeptid | yes | no | 0.877 | 0.919 | 0.589 | 0.0 | |
| O82380 | 738 | Pentatricopeptide repeat- | no | no | 0.995 | 0.971 | 0.432 | 0.0 | |
| Q9LN01 | 741 | Pentatricopeptide repeat- | no | no | 0.955 | 0.928 | 0.401 | 1e-169 | |
| O23337 | 722 | Pentatricopeptide repeat- | no | no | 0.983 | 0.980 | 0.395 | 1e-159 | |
| Q9LUJ2 | 842 | Pentatricopeptide repeat- | no | no | 0.952 | 0.814 | 0.396 | 1e-157 | |
| Q9LTV8 | 694 | Pentatricopeptide repeat- | no | no | 0.943 | 0.978 | 0.389 | 1e-155 | |
| Q9SR82 | 685 | Putative pentatricopeptid | no | no | 0.95 | 0.998 | 0.386 | 1e-151 | |
| Q9SJZ3 | 681 | Pentatricopeptide repeat- | no | no | 0.841 | 0.889 | 0.404 | 1e-148 | |
| Q9SUH6 | 792 | Pentatricopeptide repeat- | no | no | 0.991 | 0.901 | 0.351 | 1e-146 | |
| Q9SHZ8 | 786 | Pentatricopeptide repeat- | no | no | 0.916 | 0.839 | 0.378 | 1e-144 |
| >sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2 | Back alignment and function desciption |
|---|
Score = 802 bits (2072), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/639 (58%), Positives = 484/639 (75%), Gaps = 7/639 (1%)
Query: 11 STLTQE-----TPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSE-KGD 64
ST+T+ + IS + C++ Q KQ+HSQ+I G+ NPT Q KL F CS G
Sbjct: 24 STITESISNDYSRFISILGVCKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGH 83
Query: 65 MKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKG 124
+ YA K+F KIP P V +WN MIKG+S++D GV +YL+MLK V PD++TFPFLL G
Sbjct: 84 VSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNG 143
Query: 125 FTRDI-AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVT 183
RD A+ GK+LHCHV+KFG S+++VQNAL+ Y LCG +DMARG+FD K+DV +
Sbjct: 144 LKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFS 203
Query: 184 WNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVK 243
WN M SGY R+K+++E+ +L EMER V PTSVT++LVLSAC+K+KD D+ KR H YV
Sbjct: 204 WNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVS 263
Query: 244 ECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQ 303
ECK P+L LENAL + YAACGEM A+ IF ++K +DVISWT+IV GY+ RG + +AR
Sbjct: 264 ECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLART 323
Query: 304 YFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGA 363
YFDQMP RD + WT MIDGYLR F E+L +FREMQ++ + PDEFT+VS+LTACA+LG+
Sbjct: 324 YFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGS 383
Query: 364 LELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVG 423
LE+GEW+KTYIDKNK+KND+ VGNALIDMY KCG EKAQ+VF +M ++DKFTWTAM+VG
Sbjct: 384 LEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVG 443
Query: 424 LAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP 483
LA NG G +++ +F QM SI PD++TY+GVLSAC H+GMVD+ R++FA M H IEP
Sbjct: 444 LANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEP 503
Query: 484 NEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQI 543
+ HYGCMVD+LGRAG + EA E+++ MPM PNSIVWGALLGA R+H D MAE+AAK+I
Sbjct: 504 SLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKI 563
Query: 544 LELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAG 603
LEL+PDN AVY LLCNIYA C RW + RE+R+ I+D IKKTPG S+IE+NG HEFVAG
Sbjct: 564 LELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAG 623
Query: 604 DKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGE 642
DKSH Q++EIY+KL+E+ + F Y+PD SE+ + G+
Sbjct: 624 DKSHLQSEEIYMKLEELAQESTFAAYLPDTSELLFEAGD 662
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/723 (43%), Positives = 478/723 (66%), Gaps = 6/723 (0%)
Query: 2 FSNSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-S 60
FSN + P+T + + IS IE C S+ QLKQ H I+ G ++P +KL S
Sbjct: 18 FSNPN--QPTTNNERSRHISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALS 75
Query: 61 EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDML-KSDVRPDNYTFP 119
++YA KVF +IP+P+ WNT+I+ Y+ + +LDM+ +S P+ YTFP
Sbjct: 76 SFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFP 135
Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD 179
FL+K ++ G+ LH +K S VFV N+LI Y CG++D A +F +
Sbjct: 136 FLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEK 195
Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH 239
DVV+WN+M +G+ + D+ +LF +ME + V + VT+V VLSACAK+++L+ G++
Sbjct: 196 DVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVC 255
Query: 240 RYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVD 299
Y++E ++ NL L NA+ DMY CG + A +F ++ KD ++WT ++ GY +
Sbjct: 256 SYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYE 315
Query: 300 MARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQ-TSNIRPDEFTIVSILTAC 358
AR+ + MP++D V W A+I Y + + EAL +F E+Q N++ ++ T+VS L+AC
Sbjct: 316 AAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSAC 375
Query: 359 ANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWT 418
A +GALELG W+ +YI K+ ++ + V +ALI MY KCGD+EK++ VF + ++D F W+
Sbjct: 376 AQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWS 435
Query: 419 AMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQ 478
AMI GLA++G G++++DMF +M A++ P+ VT+ V AC+HTG+VDE F M
Sbjct: 436 AMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESN 495
Query: 479 HGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEM 538
+GI P E HY C+VD+LGR+G+L +A++ I+ MP+ P++ VWGALLGAC++H + +AEM
Sbjct: 496 YGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEM 555
Query: 539 AAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVH 598
A ++LEL+P N+ +VLL NIYA +W+N ELR+ + G+KK PGCS IE++G++H
Sbjct: 556 ACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIH 615
Query: 599 EFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEED-KERAVYQHSEKLA 657
EF++GD +HP ++++Y KL E+ LK GY P+IS+V + EE+ KE+++ HSEKLA
Sbjct: 616 EFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLA 675
Query: 658 MAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCK 717
+ +GLIS+ IR++KNLR+C DCH +AKL+S +YDRE+IVRD+ RFHHF++G CSC
Sbjct: 676 ICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCN 735
Query: 718 DYW 720
D+W
Sbjct: 736 DFW 738
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 596 bits (1536), Expect = e-169, Method: Compositional matrix adjust.
Identities = 303/754 (40%), Positives = 450/754 (59%), Gaps = 66/754 (8%)
Query: 2 FSNSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSE 61
F SS PP + P +S + C+++ L+ IH+Q IK+GL +KL+ FC
Sbjct: 19 FLPSSSDPPYDSIRNHPSLSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILS 78
Query: 62 KG--DMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFP 119
+ YA VF+ I P++ +WNTM +G++ + + +Y+ M+ + P++YTFP
Sbjct: 79 PHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFP 138
Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD----- 174
F+LK + A + G+++H HVLK G D ++V +LIS Y G ++ A +FD
Sbjct: 139 FVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHR 198
Query: 175 --VSYK------------------------DDVVTWNAMFSGYKRVKQFDETRKLFGEME 208
VSY DVV+WNAM SGY + E +LF +M
Sbjct: 199 DVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMM 258
Query: 209 RKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMG 268
+ V P T+V V+SACA+ +++G++ H ++ + NL + NAL D+Y+ CGE+
Sbjct: 259 KTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGEL- 317
Query: 269 FALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNR 328
+ A F+++P +D + W +I GY +N
Sbjct: 318 ------------------------------ETACGLFERLPYKDVISWNTLIGGYTHMNL 347
Query: 329 FREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK--NKVKNDIFVG 386
++EAL LF+EM S P++ T++SIL ACA+LGA+++G W+ YIDK V N +
Sbjct: 348 YKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLR 407
Query: 387 NALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII 446
+LIDMY KCGD+E A +VF +L K +W AMI G A++G D S D+FS+M + I
Sbjct: 408 TSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQ 467
Query: 447 PDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALE 506
PD++T+VG+LSAC+H+GM+D GR F MT + + P HYGCM+DLLG +G EA E
Sbjct: 468 PDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEE 527
Query: 507 VIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNR 566
+I M M+P+ ++W +LL AC++H + E+ E A+ +++++P+N YVLL NIYA+ R
Sbjct: 528 MINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGR 587
Query: 567 WDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKF 626
W+ + R ++ D+G+KK PGCS IE++ VVHEF+ GDK HP+ +EIY L+EM L+
Sbjct: 588 WNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEK 647
Query: 627 VGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRM 686
G++PD SEV ++ EE KE A+ HSEKLA+AFGLIS+ PG + IVKNLR+C +CH
Sbjct: 648 AGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEA 707
Query: 687 AKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
KL+S +Y RE+I RD+TRFHHF+ G CSC DYW
Sbjct: 708 TKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 563 bits (1450), Expect = e-159, Method: Compositional matrix adjust.
Identities = 288/728 (39%), Positives = 442/728 (60%), Gaps = 20/728 (2%)
Query: 6 SISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFC-----CS 60
++ PP T ++ + C+S++ +KQ+H+ ++ + +KL +F S
Sbjct: 2 TLPPPIASTAANTILEKLSFCKSLNHIKQLHAHILR------TVINHKLNSFLFNLSVSS 55
Query: 61 EKGDMKYACKVFRKIPRP-SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFP 119
++ YA VF IP P ++N ++ SR + +L Y + R D ++F
Sbjct: 56 SSINLSYALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFL 115
Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD 179
+LK ++ A+ G ELH K FV+ + Y CG ++ AR +FD
Sbjct: 116 PILKAVSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHR 175
Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH 239
DVVTWN M Y R DE KLF EM+ V+P + + ++SAC + ++ + +
Sbjct: 176 DVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIY 235
Query: 240 RYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVD 299
++ E + + L AL MYA G M A E F + +++ TA+V+GY G++D
Sbjct: 236 EFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLD 295
Query: 300 MARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACA 359
A+ FDQ ++D V WT MI Y+ + +EAL +F EM S I+PD ++ S+++ACA
Sbjct: 296 DAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACA 355
Query: 360 NLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTA 419
NLG L+ +WV + I N +++++ + NALI+MY KCG ++ + VF +M R++ +W++
Sbjct: 356 NLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSS 415
Query: 420 MIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQH 479
MI L+++G +L +F++M + ++ P+EVT+VGVL C+H+G+V+EG++ FA MT ++
Sbjct: 416 MINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEY 475
Query: 480 GIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMA 539
I P HYGCMVDL GRA L EALEVI++MP+ N ++WG+L+ ACR+H + E+ + A
Sbjct: 476 NITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFA 535
Query: 540 AKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHE 599
AK+ILEL+PD++ VL+ NIYA RW++ R +R+++ ++ + K G S I+ NG HE
Sbjct: 536 AKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHE 595
Query: 600 FVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMA 659
F+ GDK H Q+ EIY KLDE+ S LK GY+PD V +DV EE+K+ V HSEKLA+
Sbjct: 596 FLIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEEEEKKDLVLWHSEKLALC 655
Query: 660 FGLISS-------GPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHG 712
FGL++ GV IRIVKNLR+C DCH KLVS VY+RE+IVRD+TRFH +K+G
Sbjct: 656 FGLMNEEKEEEKDSCGV-IRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNG 714
Query: 713 SCSCKDYW 720
CSC+DYW
Sbjct: 715 LCSCRDYW 722
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 554 bits (1428), Expect = e-157, Method: Compositional matrix adjust.
Identities = 273/689 (39%), Positives = 428/689 (62%), Gaps = 3/689 (0%)
Query: 34 QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRI 93
QIH +K+G + VQN LV F +E G++ A KVF ++ +V W +MI GY+R
Sbjct: 155 QIHGLIVKMGYAKDLFVQNSLVHFY-AECGELDSARKVFDEMSERNVVSWTSMICGYARR 213
Query: 94 DSHKNGVLIYLDMLK-SDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
D K+ V ++ M++ +V P++ T ++ + +E G++++ + G + + +
Sbjct: 214 DFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLM 273
Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
+AL+ Y C +D+A+ +FD ++ NAM S Y R E +F M GV
Sbjct: 274 VSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGV 333
Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272
P ++++ +S+C++L+++ GK H YV + NAL DMY C A
Sbjct: 334 RPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFR 393
Query: 273 IFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332
IF + NK V++W +IV GY+ G+VD A + F+ MPE++ V W +I G ++ + F EA
Sbjct: 394 IFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEA 453
Query: 333 LTLFREMQTS-NIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391
+ +F MQ+ + D T++SI +AC +LGAL+L +W+ YI+KN ++ D+ +G L+D
Sbjct: 454 IEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVD 513
Query: 392 MYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451
M+ +CGD E A +F + +D WTA I +A+ G+ ++++++F M+ + PD V
Sbjct: 514 MFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVA 573
Query: 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
+VG L+AC+H G+V +G+E F M HG+ P + HYGCMVDLLGRAG L EA+++I++M
Sbjct: 574 FVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDM 633
Query: 512 PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFR 571
PM+PN ++W +LL ACRV + EMA AA++I L P+ YVLL N+YA+ RW++
Sbjct: 634 PMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMA 693
Query: 572 ELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMP 631
++R + ++G++K PG S I++ G HEF +GD+SHP+ I LDE++ +G++P
Sbjct: 694 KVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVP 753
Query: 632 DISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVS 691
D+S V +DV E++K + +HSEKLAMA+GLISS G TIRIVKNLR+C DCH AK S
Sbjct: 754 DLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFAS 813
Query: 692 MVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
VY+RE+I+RD RFH+ + G CSC D+W
Sbjct: 814 KVYNREIILRDNNRFHYIRQGKCSCGDFW 842
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 549 bits (1415), Expect = e-155, Method: Compositional matrix adjust.
Identities = 282/724 (38%), Positives = 427/724 (58%), Gaps = 45/724 (6%)
Query: 1 MFSNSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCS 60
+++NS I S S I++ QLKQIH++ + LGL + + KL+ S
Sbjct: 12 LYTNSGIHSDSFYA------SLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLI-HASS 64
Query: 61 EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPF 120
GD+ +A +VF +PRP + WN +I+GYSR + ++ +L+Y +M + V PD++TFP
Sbjct: 65 SFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPH 124
Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD--VSYK 178
LLK + ++ G+ +H V + GFD+ VFVQN LI+ Y C + AR +F+ +
Sbjct: 125 LLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPE 184
Query: 179 DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA 238
+V+W A+ S Y + + E ++F +M + V P V +V VL+A L+DL G+
Sbjct: 185 RTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSI 244
Query: 239 HRYVKE--CKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRG 296
H V + +I P+L++ +L MYA CG
Sbjct: 245 HASVVKMGLEIEPDLLI--SLNTMYAKCG------------------------------- 271
Query: 297 QVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILT 356
QV A+ FD+M + +LW AMI GY + REA+ +F EM ++RPD +I S ++
Sbjct: 272 QVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAIS 331
Query: 357 ACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFT 416
ACA +G+LE + Y+ ++ ++D+F+ +ALIDM+ KCG VE A+ VF L +D
Sbjct: 332 ACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVV 391
Query: 417 WTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMT 476
W+AMIVG ++G +++ ++ M R + P++VT++G+L AC H+GMV EG +F M
Sbjct: 392 WSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMA 451
Query: 477 IQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMA 536
H I P + HY C++DLLGRAGHL++A EVIK MP++P VWGALL AC+ HR E+
Sbjct: 452 -DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELG 510
Query: 537 EMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGV 596
E AA+Q+ +DP N YV L N+YAA WD E+R + ++G+ K GCS +E+ G
Sbjct: 511 EYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGR 570
Query: 597 VHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKL 656
+ F GDKSHP+ +EI +++ + S LK G++ + D+ +E+ E + HSE++
Sbjct: 571 LEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERI 630
Query: 657 AMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSC 716
A+A+GLIS+ G +RI KNLR CV+CH KL+S + DRE++VRD RFHHFK G CSC
Sbjct: 631 AIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSC 690
Query: 717 KDYW 720
DYW
Sbjct: 691 GDYW 694
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 535 bits (1377), Expect = e-151, Method: Compositional matrix adjust.
Identities = 277/716 (38%), Positives = 420/716 (58%), Gaps = 32/716 (4%)
Query: 5 SSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGD 64
S ++ PS ++ + + I +++ LKQIH I L + + N L+ +
Sbjct: 2 SIVTVPSATSKVQQIKTLISVACTVNHLKQIHVSLINHHLHHDTFLVNLLLKRTLFFR-Q 60
Query: 65 MKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKG 124
KY+ +F P++ L+N++I G+ + ++L + K + +TFP +LK
Sbjct: 61 TKYSYLLFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKA 120
Query: 125 FTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTW 184
TR + + G +LH V+K GF+ V +L+S Y G ++ A +FD VVTW
Sbjct: 121 CTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTW 180
Query: 185 NAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE 244
A+FSGY + E LF +M GV P S IV VLSAC + DLD G+ +Y++E
Sbjct: 181 TALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEE 240
Query: 245 CKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQY 304
++ N + L ++YA CG+M A +F ++ KD+++W+ ++ GY +
Sbjct: 241 MEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYAS---------- 290
Query: 305 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGAL 364
+ P +E + LF +M N++PD+F+IV L++CA+LGAL
Sbjct: 291 -NSFP--------------------KEGIELFLQMLQENLKPDQFSIVGFLSSCASLGAL 329
Query: 365 ELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGL 424
+LGEW + ID+++ ++F+ NALIDMY KCG + + VF+EM KD A I GL
Sbjct: 330 DLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGL 389
Query: 425 AINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN 484
A NGH S +F Q + I PD T++G+L C H G++ +G +F ++ + ++
Sbjct: 390 AKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRT 449
Query: 485 EAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQIL 544
HYGCMVDL GRAG L++A +I +MPM+PN+IVWGALL CR+ +D ++AE K+++
Sbjct: 450 VEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELI 509
Query: 545 ELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGD 604
L+P N YV L NIY+ RWD E+R M+ +G+KK PG S IE+ G VHEF+A D
Sbjct: 510 ALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADD 569
Query: 605 KSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLIS 664
KSHP + +IY KL+++ ++++ +G++P VF DV EE+KER + HSEKLA+A GLIS
Sbjct: 570 KSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEEEKERVLGYHSEKLAVALGLIS 629
Query: 665 SGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
+ G IR+VKNLR+C DCH + KL+S + RE++VRD RFH F +GSCSC DYW
Sbjct: 630 TDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSCNDYW 685
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 524 bits (1350), Expect = e-148, Method: Compositional matrix adjust.
Identities = 247/610 (40%), Positives = 395/610 (64%), Gaps = 4/610 (0%)
Query: 12 TLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SEKGDMKYACK 70
+ PL+S +E C+ + LKQI +Q I GL+ +P ++L+ FC SE + Y+ K
Sbjct: 49 SFVLHNPLLSLLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVK 108
Query: 71 VFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKS---DVRPDNYTFPFLLKGFTR 127
+ + I P++ WN I+G+S ++ K L+Y ML+ + RPD++T+P L K
Sbjct: 109 ILKGIENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCAD 168
Query: 128 DIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAM 187
G + HVLK + V NA I + CG+++ AR +FD S D+V+WN +
Sbjct: 169 LRLSSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCL 228
Query: 188 FSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKI 247
+GYK++ + ++ ++ ME +GV P VT++ ++S+C+ L DL+ GK + YVKE +
Sbjct: 229 INGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGL 288
Query: 248 VPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQ 307
+ L NAL DM++ CG++ A IF N++ + ++SWT +++GY G +D++R+ FD
Sbjct: 289 RMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDD 348
Query: 308 MPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG 367
M E+D VLW AMI G ++ R ++AL LF+EMQTSN +PDE T++ L+AC+ LGAL++G
Sbjct: 349 MEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVG 408
Query: 368 EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAIN 427
W+ YI+K + ++ +G +L+DMY KCG++ +A VF + ++ T+TA+I GLA++
Sbjct: 409 IWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALH 468
Query: 428 GHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAH 487
G ++ F++M+ A I PDE+T++G+LSAC H GM+ GR+YF+ M + + P H
Sbjct: 469 GDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKH 528
Query: 488 YGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELD 547
Y MVDLLGRAG L EA ++++MPM+ ++ VWGALL CR+H + E+ E AAK++LELD
Sbjct: 529 YSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLELD 588
Query: 548 PDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSH 607
P + +YVLL +Y N W++ + R+M+ +RG++K PGCS IE+NG+V EF+ DKS
Sbjct: 589 PSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNGIVCEFIVRDKSR 648
Query: 608 PQTKEIYLKL 617
P++++IY +L
Sbjct: 649 PESEKIYDRL 658
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 518 bits (1334), Expect = e-146, Method: Compositional matrix adjust.
Identities = 278/790 (35%), Positives = 436/790 (55%), Gaps = 76/790 (9%)
Query: 3 SNSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEK 62
S+++ + L + + + S+ L Q H+Q I G + ++ KL T S+
Sbjct: 7 SSATAETTAALISKNTYLDFFKRSTSISHLAQTHAQIILHGFRNDISLLTKL-TQRLSDL 65
Query: 63 GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKS-DVRPDNYTFPFL 121
G + YA +F + RP V L+N +++G+S +S + + ++ + KS D++P++ T+ F
Sbjct: 66 GAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFA 125
Query: 122 LK---GFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK 178
+ GF D A G+ +H + G DS + + + ++ Y V+ AR +FD +
Sbjct: 126 ISAASGFRDDRA---GRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPE 182
Query: 179 DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVL-VLSACAKLKDLDVGKR 237
D + WN M SGY++ + + E+ ++F ++ + T +L +L A A+L++L +G +
Sbjct: 183 KDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQ 242
Query: 238 AHR--------------------YVKECKIV-----------PNLILENALTDMYAACGE 266
H Y K KI P+++ NA+ Y + GE
Sbjct: 243 IHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGE 302
Query: 267 MGFALEIF-------GNIKNKDVISW-----------------------------TAIVT 290
+L +F +++ ++S TA+ T
Sbjct: 303 TELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTALTT 362
Query: 291 GYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFT 350
Y +++ AR+ FD+ PE+ W AMI GY + +A++LFREMQ S P+ T
Sbjct: 363 VYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVT 422
Query: 351 IVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML 410
I IL+ACA LGAL LG+WV + ++ I+V ALI MY KCG + +A+R+F M
Sbjct: 423 ITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMT 482
Query: 411 RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGRE 470
+K++ TW MI G ++G G ++L++F +ML + I P VT++ VL AC+H G+V EG E
Sbjct: 483 KKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDE 542
Query: 471 YFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVH 530
F M ++G EP+ HY CMVD+LGRAGHL AL+ I+ M ++P S VW LLGACR+H
Sbjct: 543 IFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIH 602
Query: 531 RDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSM 590
+D +A ++++ ELDPDN +VLL NI++A + +RQ R + K PG ++
Sbjct: 603 KDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTL 662
Query: 591 IEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVY 650
IE+ H F +GD+SHPQ KEIY KL+++ ++ GY P+ DV EE++E V
Sbjct: 663 IEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVK 722
Query: 651 QHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFK 710
HSE+LA+AFGLI++ PG IRI+KNLR+C+DCH + KL+S + +R ++VRD RFHHFK
Sbjct: 723 VHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFK 782
Query: 711 HGSCSCKDYW 720
G CSC DYW
Sbjct: 783 DGVCSCGDYW 792
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 513 bits (1320), Expect = e-144, Method: Compositional matrix adjust.
Identities = 264/697 (37%), Positives = 406/697 (58%), Gaps = 37/697 (5%)
Query: 60 SEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFP 119
S++GDM C+ F ++P+ W TMI GY I + + + DM+K + P +T
Sbjct: 91 SKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLT 150
Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD 179
+L +E GK++H ++K G +V V N+L++ Y CG+ MA+ +FD
Sbjct: 151 NVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVR 210
Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL-------------------------- 213
D+ +WNAM + + +V Q D F +M + ++
Sbjct: 211 DISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKML 270
Query: 214 ------PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEM 267
P T+ VLSACA L+ L +GK+ H ++ + I+ NAL MY+ CG +
Sbjct: 271 RDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGV 330
Query: 268 GFALEIFGNIKNKD--VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLR 325
A + KD + +TA++ GYI G ++ A+ F + +RD V WTAMI GY +
Sbjct: 331 ETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQ 390
Query: 326 VNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFV 385
+ EA+ LFR M RP+ +T+ ++L+ ++L +L G+ + K+ + V
Sbjct: 391 HGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSV 450
Query: 386 GNALIDMYCKCGDVEKAQRVFREMLR--KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRA 443
NALI MY K G++ A R F +++R +D +WT+MI+ LA +GH +++L++F ML
Sbjct: 451 SNALITMYAKAGNITSASRAF-DLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLME 509
Query: 444 SIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNE 503
+ PD +TYVGV SACTH G+V++GR+YF M I P +HY CMVDL GRAG L E
Sbjct: 510 GLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQE 569
Query: 504 ALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAA 563
A E I+ MP++P+ + WG+LL ACRVH++ ++ ++AA+++L L+P+N Y L N+Y+A
Sbjct: 570 AQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSA 629
Query: 564 CNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSD 623
C +W+ ++R+ + D +KK G S IE+ VH F D +HP+ EIY+ + ++ +
Sbjct: 630 CGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDE 689
Query: 624 LKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDC 683
+K +GY+PD + V D+ EE KE+ + HSEKLA+AFGLIS+ T+RI+KNLR+C DC
Sbjct: 690 IKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDC 749
Query: 684 HRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
H K +S + RE+IVRD TRFHHFK G CSC+DYW
Sbjct: 750 HTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 720 | ||||||
| 225442904 | 724 | PREDICTED: putative pentatricopeptide re | 1.0 | 0.994 | 0.711 | 0.0 | |
| 449436619 | 723 | PREDICTED: putative pentatricopeptide re | 0.986 | 0.982 | 0.689 | 0.0 | |
| 449491161 | 744 | PREDICTED: LOW QUALITY PROTEIN: putative | 0.986 | 0.954 | 0.688 | 0.0 | |
| 356528966 | 712 | PREDICTED: putative pentatricopeptide re | 0.977 | 0.988 | 0.679 | 0.0 | |
| 357468161 | 874 | Pentatricopeptide repeat-containing prot | 0.987 | 0.813 | 0.646 | 0.0 | |
| 356522333 | 650 | PREDICTED: putative pentatricopeptide re | 0.891 | 0.987 | 0.601 | 0.0 | |
| 224134923 | 635 | predicted protein [Populus trichocarpa] | 0.813 | 0.922 | 0.647 | 0.0 | |
| 9294596 | 695 | unnamed protein product [Arabidopsis tha | 0.888 | 0.920 | 0.583 | 0.0 | |
| 15233234 | 687 | pentatricopeptide repeat-containing prot | 0.877 | 0.919 | 0.589 | 0.0 | |
| 242051881 | 627 | hypothetical protein SORBIDRAFT_03g00412 | 0.863 | 0.992 | 0.538 | 0.0 |
| >gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g15930 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1089 bits (2817), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/724 (71%), Positives = 609/724 (84%), Gaps = 4/724 (0%)
Query: 1 MFSNSSISPPST---LTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTF 57
M S +++SPP T +TP +S I+TC+SM QLKQIHSQTI GL++NP V +++ F
Sbjct: 1 MISATTLSPPPTHLPSLPQTPPLSLIKTCKSMAQLKQIHSQTICTGLISNPIVPAQIIAF 60
Query: 58 CCS-EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNY 116
CC E GDM+YA VF +P P+ +WN MIKGYSR+ + V +Y +ML+ V PD Y
Sbjct: 61 CCKHELGDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEY 120
Query: 117 TFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVS 176
T+PFLLK FTRD AV+ G+ELH H++K GF S+VFVQNALI Y L GEV +ARG+FD S
Sbjct: 121 TYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRS 180
Query: 177 YKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGK 236
K DVVTWN M SGY R KQFDE+ KLF EMER VLP+S+T+V VLSAC+KLKDL+VGK
Sbjct: 181 SKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGK 240
Query: 237 RAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRG 296
R HRYVK+ KI P +LENAL DMYAACG+M AL IF N+K++DVISWTAIVTG+ N G
Sbjct: 241 RVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLG 300
Query: 297 QVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILT 356
QV +AR YFD+MPERD+V WTAMIDGYL+VNRF+E L+LFREMQ +NI+PDEFT+VSILT
Sbjct: 301 QVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILT 360
Query: 357 ACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFT 416
ACA+LGALELGEW+K YIDKN++K D FVGNALIDMY CG+VEKA R+F M +DK +
Sbjct: 361 ACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKIS 420
Query: 417 WTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMT 476
WTA+I GLAING+G+++LDMFSQML+ASI PDEVT +GVL ACTH+GMVD+G+++FA MT
Sbjct: 421 WTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMT 480
Query: 477 IQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMA 536
QHGIEPN AHYGCMVDLLGRAGHL EA EVIKNMP+KPNSIVWG+LLGACRVHRD EMA
Sbjct: 481 TQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMA 540
Query: 537 EMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGV 596
EMAA+QILEL+P+N AVYVLLCNIYAACNRW+ E+R++++DRGIKKTPGCS+IEMNG
Sbjct: 541 EMAAQQILELEPENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEMNGS 600
Query: 597 VHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKL 656
VHEFVAGD+ HPQ+KEIY KLDEM+ DLKF GY PD SEVFLD+GEE+KE AVY+HSEKL
Sbjct: 601 VHEFVAGDQVHPQSKEIYSKLDEMSVDLKFAGYSPDTSEVFLDIGEEEKESAVYRHSEKL 660
Query: 657 AMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSC 716
A+AFGLISSGPGVTIRIVKNLRMCVDCH +AKLVS VY+REVIVRD+TRFHHF+HGSCSC
Sbjct: 661 AIAFGLISSGPGVTIRIVKNLRMCVDCHYVAKLVSKVYNREVIVRDRTRFHHFRHGSCSC 720
Query: 717 KDYW 720
KDYW
Sbjct: 721 KDYW 724
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g15930-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1082 bits (2797), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/716 (68%), Positives = 604/716 (84%), Gaps = 6/716 (0%)
Query: 6 SISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCS-EKGD 64
S SPP+ PLIS +ETCESM QL+Q+H Q IK GL NP +QN+++TFCC+ E GD
Sbjct: 13 SFSPPTH-----PLISLLETCESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGD 67
Query: 65 MKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKG 124
+YA ++F +IP P++ +WNTMI+GYSR+D + GV +YL+ML+ V+PD YTFPFL KG
Sbjct: 68 FQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKG 127
Query: 125 FTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTW 184
FTRDIA+E+G++LH HVLK G +VFV AL+ Y LCG++D ARG+FDV K DV+TW
Sbjct: 128 FTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITW 187
Query: 185 NAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE 244
N + S Y +V +F+E+R+LF ME K VLPT+VT+VLVLSAC+KLKDL GK+ H YVK
Sbjct: 188 NMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKN 247
Query: 245 CKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQY 304
CK+ NL+LENA+ DMYA CGEM AL IF ++ N+D+ISWT IV+G+ N G++D+AR Y
Sbjct: 248 CKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNY 307
Query: 305 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGAL 364
FD+MPE+DYV WTAMIDGY+R NRF+EAL LFR MQ +N++PDEFT+VS+LTACA+LGAL
Sbjct: 308 FDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGAL 367
Query: 365 ELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGL 424
ELGEW++TYID+NK+KND+FV NALIDMY KCGDV+KA+ +FREM ++DKFTWTAMIVGL
Sbjct: 368 ELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGL 427
Query: 425 AINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN 484
A+NGHG+K+LDMFS ML+ASI+PDE+TY+GVLSACTHTG+VD+GR+YF MT QHGIEPN
Sbjct: 428 AVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPN 487
Query: 485 EAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQIL 544
AHYGC+VDLL RAG L EA EVI+NMP+K NSIVWGALL CRV+R+++MAEM KQIL
Sbjct: 488 IAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQIL 547
Query: 545 ELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGD 604
EL+PDN AVYVLLCNIYAAC RW++ RELRQM++D+GIKKTPGCS+IEMNG VHEFVAGD
Sbjct: 548 ELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMNGRVHEFVAGD 607
Query: 605 KSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLIS 664
+SHPQTK I KLD+MT DLK GY PDISEVFLD+ EEDKE +V++HSEKLA+AFGLI+
Sbjct: 608 RSHPQTKNIDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEKLAIAFGLIN 667
Query: 665 SGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
S PGVTIRI KNLRMC+DCH MAKLVS VY+REVIVRD+TRFHHFKHG CSCKDYW
Sbjct: 668 SPPGVTIRITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKDYW 723
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g15930-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1078 bits (2789), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/716 (68%), Positives = 603/716 (84%), Gaps = 6/716 (0%)
Query: 6 SISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCS-EKGD 64
S SPP+ PLIS +ETCESM QL+Q+H Q IK GL NP +QN+++TFCC+ E GD
Sbjct: 34 SFSPPTH-----PLISLLETCESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGD 88
Query: 65 MKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKG 124
+YA ++F +IP P++ +WNTMI+GYSR+D + GV +YL+ML+ V+PD YTFPFL KG
Sbjct: 89 FQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKG 148
Query: 125 FTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTW 184
FTRDIA+E+G++LH HVLK G +VFV AL+ Y LCG++D ARG+FDV K DV+TW
Sbjct: 149 FTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITW 208
Query: 185 NAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE 244
N + S Y +V +F+E+R+LF ME K VLPT+VT+VLVLSAC+KLKDL GK+ H YVK
Sbjct: 209 NMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKN 268
Query: 245 CKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQY 304
CK+ NL+LENA+ DMYA CGEM AL IF ++ N+D+ISWT IV+G+ N G++D+AR Y
Sbjct: 269 CKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNY 328
Query: 305 FDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGAL 364
FD+MPE+DYV WTAMIDGY+R NRF+EAL LFR MQ +N++PDEFT+VS+LTACA+LGAL
Sbjct: 329 FDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGAL 388
Query: 365 ELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGL 424
ELGEW++TYID+NK+KND+FV NALIDMY KCGDV+KA+ +FREM ++DKFTWTAMIVGL
Sbjct: 389 ELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGL 448
Query: 425 AINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN 484
A+NGHG+K+LDMFS ML+ASI+PDE+TY+GVLSACTHTG+VD+GR+YF MT QHGIEPN
Sbjct: 449 AVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPN 508
Query: 485 EAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQIL 544
AHYGC+VDLL RAG L EA EVI+NMP+K NSIVWGALL CRV+R+++MAEM KQIL
Sbjct: 509 IAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQIL 568
Query: 545 ELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGD 604
EL+PDN AVYVLLCNIYAAC RW++ RELRQM++D+GIKK PGCS+IEMNG VHEFVAGD
Sbjct: 569 ELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEMNGRVHEFVAGD 628
Query: 605 KSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLIS 664
+SHPQTK I KLD+MT DLK GY PDISEVFLD+ EEDKE +V++HSEKLA+AFGLI+
Sbjct: 629 RSHPQTKNIDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEKLAIAFGLIN 688
Query: 665 SGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
S PGVTIRI KNLRMC+DCH MAKLVS VY+REVIVRD+TRFHHFKHG CSCKDYW
Sbjct: 689 SPPGVTIRITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKDYW 744
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g15930-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1041 bits (2693), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/706 (67%), Positives = 595/706 (84%), Gaps = 2/706 (0%)
Query: 16 ETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCS-EKGDMKYACKVFRK 74
E+P IS +E C+SM+QLKQIHS TIK+GL ++P Q +++ FCC+ E G M YA +VF
Sbjct: 8 ESP-ISLLEKCKSMYQLKQIHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVFDA 66
Query: 75 IPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFG 134
IP+P++ +WNTMIKGYSRI+ +NGV +YL ML S+++PD +TFPFLLKGFTR++A+++G
Sbjct: 67 IPQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYG 126
Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
K L H +K GFDS++FVQ A I + LC VD+AR +FD+ +VVTWN M SGY RV
Sbjct: 127 KVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRV 186
Query: 195 KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILE 254
KQF +++ LF EME++GV P SVT+VL+LSAC+KLKDL+ GK ++Y+ + NLILE
Sbjct: 187 KQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILE 246
Query: 255 NALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYV 314
N L DM+AACGEM A +F N+KN+DVISWT+IVTG+ N GQ+D+AR+YFDQ+PERDYV
Sbjct: 247 NVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYV 306
Query: 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYI 374
WTAMIDGYLR+NRF EAL LFREMQ SN++PDEFT+VSILTACA+LGALELGEWVKTYI
Sbjct: 307 SWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYI 366
Query: 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSL 434
DKN +KND FVGNALIDMY KCG+V KA++VF+EM KDKFTWTAMIVGLAINGHG+++L
Sbjct: 367 DKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEAL 426
Query: 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL 494
MFS M+ ASI PDE+TY+GVL ACTH GMV++G+ +F MT+QHGI+PN HYGCMVDL
Sbjct: 427 AMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDL 486
Query: 495 LGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVY 554
LGRAG L EA EVI NMP+KPNSIVWG+LLGACRVH++ ++AEMAAKQILEL+P+N AVY
Sbjct: 487 LGRAGRLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILELEPENGAVY 546
Query: 555 VLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIY 614
VLLCNIYAAC RW+N R++R+++++RGIKKTPGCS++E+NG V+EFVAGD+SHPQ+KEIY
Sbjct: 547 VLLCNIYAACKRWENLRQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKEIY 606
Query: 615 LKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIV 674
KL+ M DL GY PD SEVFLD+GEEDKE A+Y+HSEKLA+A+ LISSGPG+TIRIV
Sbjct: 607 AKLENMMQDLIKAGYSPDTSEVFLDLGEEDKETALYRHSEKLAIAYALISSGPGITIRIV 666
Query: 675 KNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
KNLRMCVDCH MAKLVS Y+RE+IVRDKTRFHHF+HGSCSC ++W
Sbjct: 667 KNLRMCVDCHHMAKLVSEAYNRELIVRDKTRFHHFRHGSCSCNNFW 712
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 985 bits (2546), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/724 (64%), Positives = 586/724 (80%), Gaps = 13/724 (1%)
Query: 2 FSNSSISP-PSTLTQETPL-------ISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNK 53
F N S+S + TPL IS +ETC +M+++ QIHSQTIK GL +N K
Sbjct: 13 FPNLSLSLFLKRMISNTPLHSFVKSPISLLETCNTMYEINQIHSQTIKTGLSSNHLFLTK 72
Query: 54 LVTFCCS-EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVR 112
++ FCC+ E GD+ YA KVF +IP+PSV +WNTMIKGYSRI+ ++GV +Y ML +++
Sbjct: 73 VIIFCCTKESGDVYYARKVFDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIK 132
Query: 113 PDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGF-DSSVFVQNALISTYCLCGEVDMARG 171
PD +TFPFLLKGFT+D+A+++GK L H + GF DS++FVQ I + LCG V+ AR
Sbjct: 133 PDGFTFPFLLKGFTKDMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARK 192
Query: 172 IFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG--VLPTSVTIVLVLSACAKL 229
IFD+ +VVTWN + SGY R K+++E+++LF EME+K V P SVT+VL+LSAC+KL
Sbjct: 193 IFDMGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKL 252
Query: 230 KDLDVGKRAH-RYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAI 288
KDL GK + +Y+KE + PNLILENAL DM+A+CGEM A +F +K +DVISWT+I
Sbjct: 253 KDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSI 312
Query: 289 VTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDE 348
VTG+ N ++D+AR+YFDQMPERDYV WTAMIDGYLR+NRF+E LTLFR+MQ SN++PDE
Sbjct: 313 VTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDE 372
Query: 349 FTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFRE 408
FT+VSILTACA+LGALELGEW KTYIDKNK+KND F+GNALIDMY KCG+VEKA+++F E
Sbjct: 373 FTMVSILTACAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNE 432
Query: 409 MLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEG 468
M +KDKFTWTAMIVGLA NGHG+++L MFS ML AS+ PDE+TY+GV+ ACTH G+V +G
Sbjct: 433 MQKKDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKG 492
Query: 469 REYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACR 528
+ +F++M +QHGI+PN HYGCMVDLLGRAGHL EALEVI NMP+KPNSIVWG+LLGACR
Sbjct: 493 KHFFSNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLGACR 552
Query: 529 VHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGC 588
VH++ ++AEMAA +ILEL+P+N AVYVLLCNIYAAC +W N +R+M+++RGIKK PGC
Sbjct: 553 VHKNVQLAEMAANEILELEPENGAVYVLLCNIYAACKKWKNLHNVRKMMMERGIKKIPGC 612
Query: 589 SMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERA 648
S++EMNG+V+EFVAGDKSHPQ+KEIY KL+ M DL GY PD SEVFLDVGEEDKE A
Sbjct: 613 SLMEMNGIVYEFVAGDKSHPQSKEIYAKLENMKQDLSNAGYSPDTSEVFLDVGEEDKETA 672
Query: 649 VYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHH 708
+Y HSEKLA+A+ LISSG GVTIRIVKNLRMCVDCH MA +VS VY+RE+IVRDKTRFHH
Sbjct: 673 LYMHSEKLAIAYALISSGKGVTIRIVKNLRMCVDCHHMAMVVSKVYNRELIVRDKTRFHH 732
Query: 709 FKHG 712
F+HG
Sbjct: 733 FRHG 736
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g15930-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 867 bits (2240), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/706 (60%), Positives = 528/706 (74%), Gaps = 64/706 (9%)
Query: 16 ETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCS-EKGDMKYACKVFRK 74
E+P IS +E C+SM+QLKQIHS TIK+GL ++P +N+++ FCC+ E G+M YA +VF
Sbjct: 8 ESP-ISLLEKCKSMYQLKQIHSHTIKMGLSSDPLFRNRVIAFCCAHESGNMNYAHQVFDT 66
Query: 75 IPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFG 134
IP PS+ +WNTMIKGYS+I +NGV +YL ML S+++PD +TFPF LKGFTRD+A++ G
Sbjct: 67 IPHPSMFIWNTMIKGYSKISHPENGVSMYLLMLTSNIKPDRFTFPFSLKGFTRDMALQHG 126
Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRV 194
KEL H +K GFDS++FVQ A I + LCG VD+A +FD+ +VVTWN M SGY RV
Sbjct: 127 KELLNHAVKHGFDSNLFVQKAFIHMFSLCGIVDLAHKVFDMGDACEVVTWNIMLSGYNRV 186
Query: 195 KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILE 254
KQF ++ L LVLSAC+KLKDL+ GK +Y+ I+E
Sbjct: 187 KQFKISKML-----------------LVLSACSKLKDLEWGKHIFKYIN------GGIVE 223
Query: 255 NALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYV 314
+ M+AACGEM D A+ FD M RD V
Sbjct: 224 H----MFAACGEM-------------------------------DEAQGVFDNMKTRDVV 248
Query: 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYI 374
WTAMIDGYLR+N F AL LFREMQ SN++PDEFT+VSIL ACA LGALELGEWVKT I
Sbjct: 249 SWTAMIDGYLRMNHFIGALALFREMQMSNVKPDEFTMVSILIACALLGALELGEWVKTCI 308
Query: 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSL 434
DKN KND FVGNAL+DMY KCG+V KA++VF+EM +KDKFTWT MIVGLAINGHG+++L
Sbjct: 309 DKNSNKNDSFVGNALVDMYFKCGNVRKAKKVFKEMYQKDKFTWTTMIVGLAINGHGEEAL 368
Query: 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL 494
MFS M+ AS+ PDE+TY+GVL AC MVD+G+ +F +MT+QHGI+P HYGCMVDL
Sbjct: 369 AMFSNMIEASVTPDEITYIGVLCAC----MVDKGKSFFTNMTMQHGIKPTVTHYGCMVDL 424
Query: 495 LGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVY 554
LG G L EALEVI NMP+KPNSIVWG+ LGACRVH++ ++A+MAAKQILEL+P+N AVY
Sbjct: 425 LGCVGCLEEALEVIVNMPVKPNSIVWGSPLGACRVHKNVQLADMAAKQILELEPENGAVY 484
Query: 555 VLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIY 614
VLLCNIYAA +W+N ++R+++++RGIKKTPGCS++E+NG V+EFVAGD+SHPQ+KEIY
Sbjct: 485 VLLCNIYAASKKWENLCQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKEIY 544
Query: 615 LKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIV 674
KL+ M L GY PD SEVFLD+GEEDKE A+Y+HSEKLA+A+ LISSGPGVTIRIV
Sbjct: 545 AKLENMMQGLIKAGYSPDTSEVFLDLGEEDKETALYRHSEKLAIAYALISSGPGVTIRIV 604
Query: 675 KNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
KNLRMCVDCH MAKLVS Y+RE+IV+DKTRFHHF+HGSCSC ++W
Sbjct: 605 KNLRMCVDCHHMAKLVSQAYNRELIVKDKTRFHHFRHGSCSCNNFW 650
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa] gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 817 bits (2111), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/605 (64%), Positives = 472/605 (78%), Gaps = 19/605 (3%)
Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCL--CGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
K++H +K G + +QN ++S C G++ AR +FD + V +WN MF GY
Sbjct: 31 KQIHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYARQLFDTIPEPSVFSWNIMFKGYS 90
Query: 193 RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI 252
R+ L+ EM + V P T + + L +G+ H +V + + N+
Sbjct: 91 RIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQLGRELHCHVVKYGLDSNVF 150
Query: 253 LENALTDMYAACGEMGFALEIFG-----------------NIKNKDVISWTAIVTGYINR 295
NAL +MY+ CG + A IF N KDVISWTAIVTG++N
Sbjct: 151 AHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRIKKDVISWTAIVTGFVNT 210
Query: 296 GQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSIL 355
GQVD AR+YF +MPERD+V WTAMIDGYLR+N ++EAL LFREMQTS I+PDEFT+VS+L
Sbjct: 211 GQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVL 270
Query: 356 TACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKF 415
TACA LGALELGEW++TYIDKNKVKND FVGNALIDMY KCG+VE A +F + ++DKF
Sbjct: 271 TACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQRDKF 330
Query: 416 TWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADM 475
TWTAM+VGLAING G+++L+MFSQML+AS+ PDEVTYVGVLSACTHTGMVDEG+++FA M
Sbjct: 331 TWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKFFASM 390
Query: 476 TIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEM 535
T +HGIEPN AHYGCMVDLLG+AGHL EA E+IKNMPMKPNSIVWGALLGACR+H+DAEM
Sbjct: 391 TARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGALLGACRIHKDAEM 450
Query: 536 AEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNG 595
AE A +QILEL+P+N AVYVL CNIYAACN+WD RELRQ+++DRGIKKTPGCS+IEMNG
Sbjct: 451 AERAIEQILELEPNNGAVYVLQCNIYAACNKWDKLRELRQVMMDRGIKKTPGCSLIEMNG 510
Query: 596 VVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEK 655
+VHEFVAGD+SHPQTKEIY KL++MTSDLK GY P+ SEVFLD+ EEDKE AVY+HSEK
Sbjct: 511 IVHEFVAGDQSHPQTKEIYGKLNKMTSDLKIAGYSPNTSEVFLDIAEEDKENAVYRHSEK 570
Query: 656 LAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCS 715
LA+AFGLI+SGPGVTIRIVKNLRMC+DCH +AKLVS VYDREVIVRD+TRFHHF+HGSCS
Sbjct: 571 LAIAFGLINSGPGVTIRIVKNLRMCIDCHHVAKLVSKVYDREVIVRDRTRFHHFRHGSCS 630
Query: 716 CKDYW 720
CKDYW
Sbjct: 631 CKDYW 635
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 803 bits (2075), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/651 (58%), Positives = 490/651 (75%), Gaps = 11/651 (1%)
Query: 11 STLTQE-----TPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSE-KGD 64
ST+T+ + IS + C++ Q KQ+HSQ+I G+ NPT Q KL F CS G
Sbjct: 24 STITESISNDYSRFISILGVCKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGH 83
Query: 65 MKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKG 124
+ YA K+F KIP P V +WN MIKG+S++D GV +YL+MLK V PD++TFPFLL G
Sbjct: 84 VSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNG 143
Query: 125 FTRDI-AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVT 183
RD A+ GK+LHCHV+KFG S+++VQNAL+ Y LCG +DMARG+FD K+DV +
Sbjct: 144 LKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFS 203
Query: 184 WNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVK 243
WN M SGY R+K+++E+ +L EMER V PTSVT++LVLSAC+K+KD D+ KR H YV
Sbjct: 204 WNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVS 263
Query: 244 ECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQ 303
ECK P+L LENAL + YAACGEM A+ IF ++K +DVISWT+IV GY+ RG + +AR
Sbjct: 264 ECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLART 323
Query: 304 YFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGA 363
YFDQMP RD + WT MIDGYLR F E+L +FREMQ++ + PDEFT+VS+LTACA+LG+
Sbjct: 324 YFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGS 383
Query: 364 LELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVG 423
LE+GEW+KTYIDKNK+KND+ VGNALIDMY KCG EKAQ+VF +M ++DKFTWTAM+VG
Sbjct: 384 LEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVG 443
Query: 424 LAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP 483
LA NG G +++ +F QM SI PD++TY+GVLSAC H+GMVD+ R++FA M H IEP
Sbjct: 444 LANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEP 503
Query: 484 NEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQI 543
+ HYGCMVD+LGRAG + EA E+++ MPM PNSIVWGALLGA R+H D MAE+AAK+I
Sbjct: 504 SLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKI 563
Query: 544 LELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAG 603
LEL+PDN AVY LLCNIYA C RW + RE+R+ I+D IKKTPG S+IE+NG HEFVAG
Sbjct: 564 LELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAG 623
Query: 604 DKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSE 654
DKSH Q++EIY+KL+E+ + F Y+PD SE+ + G ++ E +HS+
Sbjct: 624 DKSHLQSEEIYMKLEELAQESTFAAYLPDTSELLFEAGNKELE----EHSQ 670
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At3g15930 gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 802 bits (2072), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/639 (58%), Positives = 484/639 (75%), Gaps = 7/639 (1%)
Query: 11 STLTQE-----TPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSE-KGD 64
ST+T+ + IS + C++ Q KQ+HSQ+I G+ NPT Q KL F CS G
Sbjct: 24 STITESISNDYSRFISILGVCKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGH 83
Query: 65 MKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKG 124
+ YA K+F KIP P V +WN MIKG+S++D GV +YL+MLK V PD++TFPFLL G
Sbjct: 84 VSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNG 143
Query: 125 FTRDI-AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVT 183
RD A+ GK+LHCHV+KFG S+++VQNAL+ Y LCG +DMARG+FD K+DV +
Sbjct: 144 LKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFS 203
Query: 184 WNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVK 243
WN M SGY R+K+++E+ +L EMER V PTSVT++LVLSAC+K+KD D+ KR H YV
Sbjct: 204 WNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVS 263
Query: 244 ECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQ 303
ECK P+L LENAL + YAACGEM A+ IF ++K +DVISWT+IV GY+ RG + +AR
Sbjct: 264 ECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLART 323
Query: 304 YFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGA 363
YFDQMP RD + WT MIDGYLR F E+L +FREMQ++ + PDEFT+VS+LTACA+LG+
Sbjct: 324 YFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGS 383
Query: 364 LELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVG 423
LE+GEW+KTYIDKNK+KND+ VGNALIDMY KCG EKAQ+VF +M ++DKFTWTAM+VG
Sbjct: 384 LEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVG 443
Query: 424 LAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP 483
LA NG G +++ +F QM SI PD++TY+GVLSAC H+GMVD+ R++FA M H IEP
Sbjct: 444 LANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEP 503
Query: 484 NEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQI 543
+ HYGCMVD+LGRAG + EA E+++ MPM PNSIVWGALLGA R+H D MAE+AAK+I
Sbjct: 504 SLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKI 563
Query: 544 LELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAG 603
LEL+PDN AVY LLCNIYA C RW + RE+R+ I+D IKKTPG S+IE+NG HEFVAG
Sbjct: 564 LELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAG 623
Query: 604 DKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGE 642
DKSH Q++EIY+KL+E+ + F Y+PD SE+ + G+
Sbjct: 624 DKSHLQSEEIYMKLEELAQESTFAAYLPDTSELLFEAGD 662
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor] gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/629 (53%), Positives = 455/629 (72%), Gaps = 7/629 (1%)
Query: 97 KNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDI----AVEFGKELHCHVLKFGFDSSVFV 152
++ V Y ML RPD YTFP LLK R + + +H HV++ G + V
Sbjct: 1 EDAVAGYARMLARGGRPDAYTFPALLKAVARAAGGSGSAAPARAVHAHVVRLGMGRNAHV 60
Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
++L++ Y G+ AR + V D V WNA+ SG+ R +F E+ F +M R G
Sbjct: 61 ASSLVAAYTAGGDGAAARAL--VGECDTPVAWNALISGHNRGGRFGESCGSFVDMARAGA 118
Query: 213 LPTSVTIVLVLSACAK-LKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFAL 271
PT VT V VLSAC K +D+ +G + H V ++P+L +ENAL DMYA C +MG A
Sbjct: 119 APTPVTYVSVLSACGKGTRDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMGSAW 178
Query: 272 EIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFRE 331
++F ++ + V+SWT++++G GQVD AR FD+MPERD V WTAMIDGY+ RFRE
Sbjct: 179 KVFDGMQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFRE 238
Query: 332 ALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391
AL +FREMQ SN+ DEFT+VS++TACA LGALE+GEWV+ Y+ + +K D FVGNALID
Sbjct: 239 ALEMFREMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALID 298
Query: 392 MYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451
MY KCG +E+A VF+ M +DKFTWTA+I+GLA+NG+ +++++MF +M+R S PDEVT
Sbjct: 299 MYSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEAIEMFHRMIRVSETPDEVT 358
Query: 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511
++GVL+ACTH G+VD+GRE+F M + I PN HYGC++DLLGRAG + EAL+ I M
Sbjct: 359 FIGVLTACTHAGLVDKGREFFLSMIEAYNIAPNVVHYGCIIDLLGRAGKITEALDTIDQM 418
Query: 512 PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFR 571
PM PNS +WG LL ACRVH ++E+ E+ A+++LELDP+N VY+LL NIYA CNRW++ R
Sbjct: 419 PMTPNSTIWGTLLAACRVHGNSEIGELVAERLLELDPENSMVYILLSNIYAKCNRWEDVR 478
Query: 572 ELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMP 631
LR I+++GIKK PGCS+IEM+G++HEFVAGD+SHP +KEIY KL+ + SDL VGY P
Sbjct: 479 RLRHAIMEKGIKKEPGCSLIEMDGIIHEFVAGDQSHPMSKEIYSKLESIISDLNNVGYFP 538
Query: 632 DISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVS 691
D++EVF++V E++K++ +Y HSEKLA+AF L+SS P IRIVKNLRMC+DCH KL+S
Sbjct: 539 DVTEVFVEVAEKEKKKVLYWHSEKLAIAFALLSSKPNTVIRIVKNLRMCLDCHNAIKLIS 598
Query: 692 MVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
+Y REV+VRD+TRFHHF+HG CSCKDYW
Sbjct: 599 RLYGREVVVRDRTRFHHFRHGFCSCKDYW 627
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 720 | ||||||
| TAIR|locus:2093920 | 687 | AT3G15930 "AT3G15930" [Arabido | 0.865 | 0.906 | 0.598 | 1.2e-209 | |
| TAIR|locus:2060640 | 738 | OTP81 "ORGANELLE TRANSCRIPT PR | 0.995 | 0.971 | 0.432 | 5e-170 | |
| TAIR|locus:2205200 | 741 | OTP82 "AT1G08070" [Arabidopsis | 0.986 | 0.958 | 0.398 | 1.4e-151 | |
| TAIR|locus:2130354 | 722 | AT4G14820 "AT4G14820" [Arabido | 0.988 | 0.986 | 0.396 | 1.2e-147 | |
| TAIR|locus:2041198 | 681 | SLO1 "SLOW GROWTH 1" [Arabidop | 0.831 | 0.879 | 0.409 | 5.2e-136 | |
| TAIR|locus:2103483 | 890 | OTP84 "ORGANELLE TRANSCRIPT PR | 0.613 | 0.496 | 0.405 | 2.9e-131 | |
| TAIR|locus:2154855 | 620 | AT5G66520 "AT5G66520" [Arabido | 0.812 | 0.943 | 0.387 | 1.7e-128 | |
| TAIR|locus:2144143 | 622 | AT5G06540 [Arabidopsis thalian | 0.813 | 0.942 | 0.397 | 5.9e-128 | |
| TAIR|locus:2167593 | 657 | AT5G44230 [Arabidopsis thalian | 0.812 | 0.890 | 0.404 | 2.6e-127 | |
| TAIR|locus:2150936 | 623 | AT5G15340 [Arabidopsis thalian | 0.811 | 0.937 | 0.418 | 7e-125 |
| TAIR|locus:2093920 AT3G15930 "AT3G15930" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2027 (718.6 bits), Expect = 1.2e-209, P = 1.2e-209
Identities = 374/625 (59%), Positives = 478/625 (76%)
Query: 20 ISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGD-MKYACKVFRKIPRP 78
IS + C++ Q KQ+HSQ+I G+ NPT Q KL F CS G + YA K+F KIP P
Sbjct: 38 ISILGVCKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPEP 97
Query: 79 SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDI-AVEFGKEL 137
V +WN MIKG+S++D GV +YL+MLK V PD++TFPFLL G RD A+ GK+L
Sbjct: 98 DVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKKL 157
Query: 138 HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQF 197
HCHV+KFG S+++VQNAL+ Y LCG +DMARG+FD K+DV +WN M SGY R+K++
Sbjct: 158 HCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEY 217
Query: 198 DETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENAL 257
+E+ +L EMER V PTSVT++LVLSAC+K+KD D+ KR H YV ECK P+L LENAL
Sbjct: 218 EESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENAL 277
Query: 258 TDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWT 317
+ YAACGEM A+ IF ++K +DVISWT+IV GY+ RG + +AR YFDQMP RD + WT
Sbjct: 278 VNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWT 337
Query: 318 AMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN 377
MIDGYLR F E+L +FREMQ++ + PDEFT+VS+LTACA+LG+LE+GEW+KTYIDKN
Sbjct: 338 IMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKN 397
Query: 378 KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMF 437
K+KND+ VGNALIDMY KCG EKAQ+VF +M ++DKFTWTAM+VGLA NG G +++ +F
Sbjct: 398 KIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVF 457
Query: 438 SQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR 497
QM SI PD++TY+GVLSAC H+GMVD+ R++FA M H IEP+ HYGCMVD+LGR
Sbjct: 458 FQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGR 517
Query: 498 AGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLL 557
AG + EA E+++ MPM PNSIVWGALLGA R+H D MAE+AAK+ILEL+PDN AVY LL
Sbjct: 518 AGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAVYALL 577
Query: 558 CNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKL 617
CNIYA C RW + RE+R+ I+D IKKTPG S+IE+NG HEFVAGDKSH Q++EIY+KL
Sbjct: 578 CNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGDKSHLQSEEIYMKL 637
Query: 618 DEMTSDLKFVGYMPDISEVFLDVGE 642
+E+ + F Y+PD SE+ + G+
Sbjct: 638 EELAQESTFAAYLPDTSELLFEAGD 662
|
|
| TAIR|locus:2060640 OTP81 "ORGANELLE TRANSCRIPT PROCESSING 81" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1653 (586.9 bits), Expect = 5.0e-170, P = 5.0e-170
Identities = 313/723 (43%), Positives = 478/723 (66%)
Query: 2 FSNSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-S 60
FSN + P+T + + IS IE C S+ QLKQ H I+ G ++P +KL S
Sbjct: 18 FSNPN--QPTTNNERSRHISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALS 75
Query: 61 EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDML-KSDVRPDNYTFP 119
++YA KVF +IP+P+ WNT+I+ Y+ + +LDM+ +S P+ YTFP
Sbjct: 76 SFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFP 135
Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD 179
FL+K ++ G+ LH +K S VFV N+LI Y CG++D A +F +
Sbjct: 136 FLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEK 195
Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH 239
DVV+WN+M +G+ + D+ +LF +ME + V + VT+V VLSACAK+++L+ G++
Sbjct: 196 DVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVC 255
Query: 240 RYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVD 299
Y++E ++ NL L NA+ DMY CG + A +F ++ KD ++WT ++ GY +
Sbjct: 256 SYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYE 315
Query: 300 MARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTS-NIRPDEFTIVSILTAC 358
AR+ + MP++D V W A+I Y + + EAL +F E+Q N++ ++ T+VS L+AC
Sbjct: 316 AAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSAC 375
Query: 359 ANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWT 418
A +GALELG W+ +YI K+ ++ + V +ALI MY KCGD+EK++ VF + ++D F W+
Sbjct: 376 AQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWS 435
Query: 419 AMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQ 478
AMI GLA++G G++++DMF +M A++ P+ VT+ V AC+HTG+VDE F M
Sbjct: 436 AMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESN 495
Query: 479 HGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEM 538
+GI P E HY C+VD+LGR+G+L +A++ I+ MP+ P++ VWGALLGAC++H + +AEM
Sbjct: 496 YGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEM 555
Query: 539 AAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVH 598
A ++LEL+P N+ +VLL NIYA +W+N ELR+ + G+KK PGCS IE++G++H
Sbjct: 556 ACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIH 615
Query: 599 EFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEED-KERAVYQHSEKLA 657
EF++GD +HP ++++Y KL E+ LK GY P+IS+V + EE+ KE+++ HSEKLA
Sbjct: 616 EFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLA 675
Query: 658 MAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCK 717
+ +GLIS+ IR++KNLR+C DCH +AKL+S +YDRE+IVRD+ RFHHF++G CSC
Sbjct: 676 ICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCN 735
Query: 718 DYW 720
D+W
Sbjct: 736 DFW 738
|
|
| TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1479 (525.7 bits), Expect = 1.4e-151, P = 1.4e-151
Identities = 292/732 (39%), Positives = 449/732 (61%)
Query: 2 FSNSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSE 61
F SS PP + P +S + C+++ L+ IH+Q IK+GL +KL+ FC
Sbjct: 19 FLPSSSDPPYDSIRNHPSLSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILS 78
Query: 62 KG--DMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFP 119
+ YA VF+ I P++ +WNTM +G++ + + +Y+ M+ + P++YTFP
Sbjct: 79 PHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFP 138
Query: 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD 179
F+LK + A + G+++H HVLK G D ++V +LIS Y G ++ A +FD S
Sbjct: 139 FVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHR 198
Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH 239
DVV++ A+ GY + +KLF E+ K V+ + I S A+ +
Sbjct: 199 DVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMI----SGYAETGNYKEALELF 254
Query: 240 RYVKECKIVPNLILENALTDMYAACG-----EMGFALEIF----GNIKNKDVISWTAIVT 290
+ + + + P+ E+ + + +AC E+G + ++ G N +++ A++
Sbjct: 255 KDMMKTNVRPD---ESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVN--ALID 309
Query: 291 GYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFT 350
Y G+++ A F+++P +D + W +I GY +N ++EAL LF+EM S P++ T
Sbjct: 310 LYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVT 369
Query: 351 IVSILTACANLGALELGEWVKTYIDKNK--VKNDIFVGNALIDMYCKCGDVEKAQRVFRE 408
++SIL ACA+LGA+++G W+ YIDK V N + +LIDMY KCGD+E A +VF
Sbjct: 370 MLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNS 429
Query: 409 MLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEG 468
+L K +W AMI G A++G D S D+FS+M + I PD++T+VG+LSAC+H+GM+D G
Sbjct: 430 ILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLG 489
Query: 469 REYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACR 528
R F MT + + P HYGCM+DLLG +G EA E+I M M+P+ ++W +LL AC+
Sbjct: 490 RHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACK 549
Query: 529 VHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGC 588
+H + E+ E A+ +++++P+N YVLL NIYA+ RW+ + R ++ D+G+KK PGC
Sbjct: 550 MHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGC 609
Query: 589 SMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERA 648
S IE++ VVHEF+ GDK HP+ +EIY L+EM L+ G++PD SEV ++ EE KE A
Sbjct: 610 SSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGA 669
Query: 649 VYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHH 708
+ HSEKLA+AFGLIS+ PG + IVKNLR+C +CH KL+S +Y RE+I RD+TRFHH
Sbjct: 670 LRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHH 729
Query: 709 FKHGSCSCKDYW 720
F+ G CSC DYW
Sbjct: 730 FRDGVCSCNDYW 741
|
|
| TAIR|locus:2130354 AT4G14820 "AT4G14820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1442 (512.7 bits), Expect = 1.2e-147, P = 1.2e-147
Identities = 287/724 (39%), Positives = 441/724 (60%)
Query: 6 SISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKG-D 64
++ PP T ++ + C+S++ +KQ+H+ ++ + N + + L S +
Sbjct: 2 TLPPPIASTAANTILEKLSFCKSLNHIKQLHAHILRT--VINHKLNSFLFNLSVSSSSIN 59
Query: 65 MKYACKVFRKIPRPSVCL-WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLK 123
+ YA VF IP P + +N ++ SR + +L Y + R D ++F +LK
Sbjct: 60 LSYALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILK 119
Query: 124 GFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVT 183
++ A+ G ELH K FV+ + Y CG ++ AR +FD DVVT
Sbjct: 120 AVSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVT 179
Query: 184 WNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVK 243
WN M Y R DE KLF EM+ V+P + + ++SAC + ++ + + ++
Sbjct: 180 WNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLI 239
Query: 244 ECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQ 303
E + + L AL MYA G M A E F + +++ TA+V+GY G++D A+
Sbjct: 240 ENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQV 299
Query: 304 YFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGA 363
FDQ ++D V WT MI Y+ + +EAL +F EM S I+PD ++ S+++ACANLG
Sbjct: 300 IFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGI 359
Query: 364 LELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVG 423
L+ +WV + I N +++++ + NALI+MY KCG ++ + VF +M R++ +W++MI
Sbjct: 360 LDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINA 419
Query: 424 LAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP 483
L+++G +L +F++M + ++ P+EVT+VGVL C+H+G+V+EG++ FA MT ++ I P
Sbjct: 420 LSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITP 479
Query: 484 NEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQI 543
HYGCMVDL GRA L EALEVI++MP+ N ++WG+L+ ACR+H + E+ + AAK+I
Sbjct: 480 KLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRI 539
Query: 544 LELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAG 603
LEL+PD++ VL+ NIYA RW++ R +R+++ ++ + K G S I+ NG HEF+ G
Sbjct: 540 LELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIG 599
Query: 604 DKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLI 663
DK H Q+ EIY KLDE+ S LK GY+PD V +DV EE+K+ V HSEKLA+ FGL+
Sbjct: 600 DKRHKQSNEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEEEEKKDLVLWHSEKLALCFGLM 659
Query: 664 SSGP-------GVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSC 716
+ GV IRIVKNLR+C DCH KLVS VY+RE+IVRD+TRFH +K+G CSC
Sbjct: 660 NEEKEEEKDSCGV-IRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSC 718
Query: 717 KDYW 720
+DYW
Sbjct: 719 RDYW 722
|
|
| TAIR|locus:2041198 SLO1 "SLOW GROWTH 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1332 (473.9 bits), Expect = 5.2e-136, P = 5.2e-136
Identities = 248/605 (40%), Positives = 397/605 (65%)
Query: 18 PLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCC-SEKGDMKYACKVFRKIP 76
PL+S +E C+ + LKQI +Q I GL+ +P ++L+ FC SE + Y+ K+ + I
Sbjct: 55 PLLSLLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKILKGIE 114
Query: 77 RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKS---DVRPDNYTFPFLLKGFTRDIAVE- 132
P++ WN I+G+S ++ K L+Y ML+ + RPD++T+P L K D+ +
Sbjct: 115 NPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFK-VCADLRLSS 173
Query: 133 FGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192
G + HVLK + V NA I + CG+++ AR +FD S D+V+WN + +GYK
Sbjct: 174 LGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYK 233
Query: 193 RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLI 252
++ + ++ ++ ME +GV P VT++ ++S+C+ L DL+ GK + YVKE + +
Sbjct: 234 KIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIP 293
Query: 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERD 312
L NAL DM++ CG++ A IF N++ + ++SWT +++GY G +D++R+ FD M E+D
Sbjct: 294 LVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKD 353
Query: 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKT 372
VLW AMI G ++ R ++AL LF+EMQTSN +PDE T++ L+AC+ LGAL++G W+
Sbjct: 354 VVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHR 413
Query: 373 YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDK 432
YI+K + ++ +G +L+DMY KCG++ +A VF + ++ T+TA+I GLA++G
Sbjct: 414 YIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDAST 473
Query: 433 SLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492
++ F++M+ A I PDE+T++G+LSAC H GM+ GR+YF+ M + + P HY MV
Sbjct: 474 AISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMV 533
Query: 493 DLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA 552
DLLGRAG L EA ++++MPM+ ++ VWGALL CR+H + E+ E AAK++LELDP +
Sbjct: 534 DLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPSDSG 593
Query: 553 VYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKE 612
+YVLL +Y N W++ + R+M+ +RG++K PGCS IE+NG+V EF+ DKS P++++
Sbjct: 594 IYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNGIVCEFIVRDKSRPESEK 653
Query: 613 IYLKL 617
IY +L
Sbjct: 654 IYDRL 658
|
|
| TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1000 (357.1 bits), Expect = 2.9e-131, Sum P(2) = 2.9e-131
Identities = 184/454 (40%), Positives = 293/454 (64%)
Query: 279 NKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 338
++D ++ Y G++D+A + F +M +RD V W MI GY+ +AL L +
Sbjct: 437 DRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHK 496
Query: 339 MQTS-----------NIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGN 387
MQ +++P+ T+++IL +CA L AL G+ + Y KN + D+ VG+
Sbjct: 497 MQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGS 556
Query: 388 ALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP 447
AL+DMY KCG ++ +++VF ++ +K+ TW +I+ ++G+G +++D+ M+ + P
Sbjct: 557 ALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKP 616
Query: 448 DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEV 507
+EVT++ V +AC+H+GMVDEG F M +G+EP+ HY C+VDLLGRAG + EA ++
Sbjct: 617 NEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQL 676
Query: 508 IKNMPMKPNSI-VWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNR 566
+ MP N W +LLGA R+H + E+ E+AA+ +++L+P+ + YVLL NIY++
Sbjct: 677 MNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGL 736
Query: 567 WDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKF 626
WD E+R+ + ++G++K PGCS IE VH+FVAGD SHPQ++++ L+ + ++
Sbjct: 737 WDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRK 796
Query: 627 VGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRM 686
GY+PD S V +V E++KE + HSEKLA+AFG++++ PG IR+ KNLR+C DCH
Sbjct: 797 EGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLA 856
Query: 687 AKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
K +S + DRE+I+RD RFH FK+G+CSC DYW
Sbjct: 857 TKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890
|
|
| TAIR|locus:2154855 AT5G66520 "AT5G66520" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1261 (449.0 bits), Expect = 1.7e-128, P = 1.7e-128
Identities = 229/591 (38%), Positives = 368/591 (62%)
Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGE----VDMARGIFDVSYKDDVVTWNAMFSG 190
K++H +LK G + +S +C+ + A+ +FD + D WN M G
Sbjct: 31 KQIHARMLKTGLMQDSYAITKFLS-FCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRG 89
Query: 191 YKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPN 250
+ + + + L+ M + T +L AC+ L + + H + + +
Sbjct: 90 FSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYEND 149
Query: 251 LILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPE 310
+ N+L + YA G A +F I D +SW +++ GY+ G++D+A F +M E
Sbjct: 150 VYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAE 209
Query: 311 RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV 370
++ + WT MI GY++ + +EAL LF EMQ S++ PD ++ + L+ACA LGALE G+W+
Sbjct: 210 KNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWI 269
Query: 371 KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHG 430
+Y++K +++ D +G LIDMY KCG++E+A VF+ + +K WTA+I G A +GHG
Sbjct: 270 HSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHG 329
Query: 431 DKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGC 490
+++ F +M + I P+ +T+ VL+AC++TG+V+EG+ F M + ++P HYGC
Sbjct: 330 REAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGC 389
Query: 491 MVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDN 550
+VDLLGRAG L+EA I+ MP+KPN+++WGALL ACR+H++ E+ E + ++ +DP +
Sbjct: 390 IVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYH 449
Query: 551 EAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQT 610
YV NI+A +WD E R+++ ++G+ K PGCS I + G HEF+AGD+SHP+
Sbjct: 450 GGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPEI 509
Query: 611 KEIYLKLDEMTSDLKFVGYMPDISEVFLD-VGEEDKERAVYQHSEKLAMAFGLISSGPGV 669
++I K M L+ GY+P++ E+ LD V ++++E V+QHSEKLA+ +GLI + PG
Sbjct: 510 EKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKLAITYGLIKTKPGT 569
Query: 670 TIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
IRI+KNLR+C DCH++ KL+S +Y R++++RD+TRFHHF+ G CSC DYW
Sbjct: 570 IIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 620
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| TAIR|locus:2144143 AT5G06540 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1256 (447.2 bits), Expect = 5.9e-128, P = 5.9e-128
Identities = 236/594 (39%), Positives = 377/594 (63%)
Query: 135 KELHCHVLKFGFDSSVFVQNALI------STYCL-CGEVDMARGIFDVSYKDDVVTWNAM 187
K +H +L+ S VFV + L+ ST+ + A GIF ++ +N +
Sbjct: 29 KIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIFSQIQNPNLFVFNLL 88
Query: 188 FSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKI 247
+ + + + +M + + P ++T ++ A ++++ + VG++ H +
Sbjct: 89 IRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVLVGEQTHSQIVRFGF 148
Query: 248 VPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQ 307
++ +EN+L MYA CG + A IFG + +DV+SWT++V GY G V+ AR+ FD+
Sbjct: 149 QNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVENAREMFDE 208
Query: 308 MPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG 367
MP R+ W+ MI+GY + N F +A+ LF M+ + +E +VS++++CA+LGALE G
Sbjct: 209 MPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLGALEFG 268
Query: 368 EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAIN 427
E Y+ K+ + ++ +G AL+DM+ +CGD+EKA VF + D +W+++I GLA++
Sbjct: 269 ERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVH 328
Query: 428 GHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAH 487
GH K++ FSQM+ IP +VT+ VLSAC+H G+V++G E + +M HGIEP H
Sbjct: 329 GHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEH 388
Query: 488 YGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELD 547
YGC+VD+LGRAG L EA I M +KPN+ + GALLGAC+++++ E+AE ++++
Sbjct: 389 YGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAERVGNMLIKVK 448
Query: 548 PDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGD-KS 606
P++ YVLL NIYA +WD LR M+ ++ +KK PG S+IE++G +++F GD +
Sbjct: 449 PEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEIDGKINKFTMGDDQK 508
Query: 607 HPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSG 666
HP+ +I K +E+ ++ +GY + + F DV EE+KE +++ HSEKLA+A+G++ +
Sbjct: 509 HPEMGKIRRKWEEILGKIRLIGYKGNTGDAFFDVDEEEKESSIHMHSEKLAIAYGMMKTK 568
Query: 667 PGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
PG TIRIVKNLR+C DCH + KL+S VY RE+IVRD+ RFHHF++G CSC+DYW
Sbjct: 569 PGTTIRIVKNLRVCEDCHTVTKLISEVYGRELIVRDRNRFHHFRNGVCSCRDYW 622
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| TAIR|locus:2167593 AT5G44230 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1250 (445.1 bits), Expect = 2.6e-127, P = 2.6e-127
Identities = 240/593 (40%), Positives = 369/593 (62%)
Query: 135 KELHCHVLKFGFDSSVFVQNALISTYCLCG-EVD-MARGIFD-VSYKDDVVTWNAMFSGY 191
K++H HVL+ G D S ++ LI T G +D AR + + V +++ + W A+ GY
Sbjct: 66 KQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQFRNPFL-WTAVIRGY 124
Query: 192 KRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNL 251
+FDE ++G M ++ + P S T +L AC +KDL++G++ H + +
Sbjct: 125 AIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRLRGFCFV 184
Query: 252 ILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER 311
+ N + DMY C + A ++F + +DVISWT ++ Y G ++ A + F+ +P +
Sbjct: 185 YVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESLPTK 244
Query: 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVK 371
D V WTAM+ G+ + + +EAL F M+ S IR DE T+ ++ACA LGA + +
Sbjct: 245 DMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAV 304
Query: 372 TYIDKN--KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGH 429
K+ + + +G+ALIDMY KCG+VE+A VF M K+ FT+++MI+GLA +G
Sbjct: 305 QIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGR 364
Query: 430 GDKSLDMFSQML-RASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY 488
++L +F M+ + I P+ VT+VG L AC+H+G+VD+GR+ F M G++P HY
Sbjct: 365 AQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDHY 424
Query: 489 GCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDP 548
CMVDLLGR G L EALE+IK M ++P+ VWGALLGACR+H + E+AE+AA+ + EL+P
Sbjct: 425 TCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAAEHLFELEP 484
Query: 549 DNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCS-MIEMNGVVHEFVAGDKSH 607
D Y+LL N+YA+ W +R++I ++G+KKTP S +++ NG +H+F G+ +H
Sbjct: 485 DIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPGNLNH 544
Query: 608 PQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGP 667
P + +I KL+E+ L +GY PD+S V DV + K + QH+EKLA+AF L+++
Sbjct: 545 PMSNKIQDKLEELVERLTVLGYQPDLSSVPYDVSDNAKRLILIQHTEKLALAFSLLTTNR 604
Query: 668 GVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKDYW 720
TI I+KNLRMC+DCH+ +L S V + +I+RD RFHHF+ G CSC D+W
Sbjct: 605 DSTITIMKNLRMCLDCHKFMRLASEVTGKVIIMRDNMRFHHFRSGDCSCGDFW 657
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| TAIR|locus:2150936 AT5G15340 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1227 (437.0 bits), Expect = 7.0e-125, P = 7.0e-125
Identities = 252/602 (41%), Positives = 364/602 (60%)
Query: 134 GKELHCHVLKFGFDSSV--FVQNALISTYCLCGEVDMARGIFD---VSYKDDVVTWNAMF 188
GKELH + G + ++ NAL Y GE+ A+ +FD +S KD+V W +
Sbjct: 25 GKELHAVLTTSGLKKAPRSYLSNALFQFYASSGEMVTAQKLFDEIPLSEKDNV-DWTTLL 83
Query: 189 SGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIV 248
S + R + KLF EM RK V V++V + CAKL+DL ++ H + ++
Sbjct: 84 SSFSRYGLLVNSMKLFVEMRRKRVEIDDVSVVCLFGVCAKLEDLGFAQQGHGVAVKMGVL 143
Query: 249 PNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM 308
++ + NAL DMY CG + IF ++ K V+SWT ++ + ++ R+ F +M
Sbjct: 144 TSVKVCNALMDMYGKCGLVSEVKRIFEELEEKSVVSWTVVLDTVVKWEGLERGREVFHEM 203
Query: 309 PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEF-TIVSILTACANLGALELG 367
PER+ V WT M+ GYL RE L L EM F T+ S+L+ACA G L +G
Sbjct: 204 PERNAVAWTVMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVVG 263
Query: 368 EWVKTYIDKNKVK-------NDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAM 420
WV Y K ++ +D+ VG AL+DMY KCG+++ + VFR M +++ TW A+
Sbjct: 264 RWVHVYALKKEMMMGEEASYDDVMVGTALVDMYAKCGNIDSSMNVFRLMRKRNVVTWNAL 323
Query: 421 IVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHG 480
GLA++G G +DMF QM+R + PD++T+ VLSAC+H+G+VDEG F + +G
Sbjct: 324 FSGLAMHGKGRMVIDMFPQMIR-EVKPDDLTFTAVLSACSHSGIVDEGWRCFHSLRF-YG 381
Query: 481 IEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAA 540
+EP HY CMVDLLGRAG + EA +++ MP+ PN +V G+LLG+C VH E+AE
Sbjct: 382 LEPKVDHYACMVDLLGRAGLIEEAEILMREMPVPPNEVVLGSLLGSCSVHGKVEIAERIK 441
Query: 541 KQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEF 600
++++++ P N +L+ N+Y A R D LR + RGI+K PG S I +N VH F
Sbjct: 442 RELIQMSPGNTEYQILMSNMYVAEGRSDIADGLRGSLRKRGIRKIPGLSSIYVNDSVHRF 501
Query: 601 VAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISE-VFLDVGE-EDKERAVYQHSEKLAM 658
+GD+SHP+TKEIYLKL+E+ ++ GY+PD+S V G+ E+KE+A+ HSEKLA+
Sbjct: 502 SSGDRSHPRTKEIYLKLNEVIERIRSAGYVPDVSGLVSHSEGDLEEKEQALCCHSEKLAV 561
Query: 659 AFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKD 718
FGL+ + P + + KNLR+C DCH K+VS VYDRE+I+RD+ RFH FK GSCSC D
Sbjct: 562 CFGLLETKPSTPLLVFKNLRICRDCHSAMKIVSKVYDREIIIRDRNRFHQFKGGSCSCSD 621
Query: 719 YW 720
YW
Sbjct: 622 YW 623
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LSB8 | PP235_ARATH | No assigned EC number | 0.5899 | 0.8777 | 0.9199 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00000293001 | SubName- Full=Chromosome chr9 scaffold_104, whole genome shotgun sequence; (724 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 720 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.0 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-149 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-81 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-56 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-43 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-36 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 9e-29 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-25 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 2e-20 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-19 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-18 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-18 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-13 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.003 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
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Score = 538 bits (1388), Expect = 0.0
Identities = 259/690 (37%), Positives = 382/690 (55%), Gaps = 43/690 (6%)
Query: 33 KQIHSQTIKLGLLTNPTVQNKLVTF---CCSEKGDMKYACKVFRKIPRPSVCLWNTMIKG 89
+++H+ ++ G + V N L+T C GD+ A VF ++PR WN MI G
Sbjct: 207 REVHAHVVRFGFELDVDVVNALITMYVKC----GDVVSARLVFDRMPRRDCISWNAMISG 262
Query: 90 YSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSS 149
Y G+ ++ M + V PD T ++ G+E+H +V+K GF
Sbjct: 263 YFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVD 322
Query: 150 VFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMER 209
V V N+LI Y G A +F D V+W AM SGY++ D+ + + ME+
Sbjct: 323 VSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQ 382
Query: 210 KGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGF 269
V P +TI VLSACA L DLDVG + H + ++ +++ NAL +MY+ C +
Sbjct: 383 DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDK 442
Query: 270 ALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVN-R 328
ALE+F NI KDVISWT+I+ G LR+N R
Sbjct: 443 ALEVFHNIPEKDVISWTSIIAG--------------------------------LRLNNR 470
Query: 329 FREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNA 388
EAL FR+M + ++P+ T+++ L+ACA +GAL G+ + ++ + + D F+ NA
Sbjct: 471 CFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNA 529
Query: 389 LIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD 448
L+D+Y +CG + A F KD +W ++ G +G G ++++F++M+ + + PD
Sbjct: 530 LLDLYVRCGRMNYAWNQF-NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD 588
Query: 449 EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVI 508
EVT++ +L AC+ +GMV +G EYF M ++ I PN HY C+VDLLGRAG L EA I
Sbjct: 589 EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFI 648
Query: 509 KNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWD 568
MP+ P+ VWGALL ACR+HR E+ E+AA+ I ELDP++ Y+LLCN+YA +WD
Sbjct: 649 NKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWD 708
Query: 569 NFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVG 628
+R+ + + G+ PGCS +E+ G VH F+ D+SHPQ KEI L+ +K G
Sbjct: 709 EVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASG 768
Query: 629 YMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAK 688
S +D E K+ HSE+LA+AFGLI++ PG+ I + KNL MC +CH K
Sbjct: 769 LAGSESSS-MDEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVK 827
Query: 689 LVSMVYDREVIVRDKTRFHHFKHGSCSCKD 718
+S + RE+ VRD +FHHFK G CSC D
Sbjct: 828 FISKIVRREISVRDTEQFHHFKDGECSCGD 857
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Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 449 bits (1157), Expect = e-149
Identities = 206/612 (33%), Positives = 330/612 (53%), Gaps = 40/612 (6%)
Query: 118 FPFLLKGFTRDIAVE---------FGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDM 168
PF L T D VE K ++ HV GF+ ++ N ++ + CG +
Sbjct: 117 CPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLID 176
Query: 169 ARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAK 228
AR +FD + ++ +W + G + E LF EM G T V++L A A
Sbjct: 177 ARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAG 236
Query: 229 LKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAI 288
L G++ H V + +V + + AL DMY+ CG+
Sbjct: 237 LGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGD---------------------- 274
Query: 289 VTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDE 348
++ AR FD MPE+ V W +M+ GY EAL L+ EM+ S + D+
Sbjct: 275 ---------IEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ 325
Query: 349 FTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFRE 408
FT ++ + L LE + + + DI AL+D+Y K G +E A+ VF
Sbjct: 326 FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDR 385
Query: 409 MLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEG 468
M RK+ +W A+I G +G G K+++MF +M+ + P+ VT++ VLSAC ++G+ ++G
Sbjct: 386 MPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQG 445
Query: 469 REYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACR 528
E F M+ H I+P HY CM++LLGR G L+EA +I+ P KP +W ALL ACR
Sbjct: 446 WEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACR 505
Query: 529 VHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGC 588
+H++ E+ +AA+++ + P+ YV+L N+Y + R ++ + + +G+ P C
Sbjct: 506 IHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPAC 565
Query: 589 SMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERA 648
+ IE+ H F +GD+ HPQ++EIY KLDE+ ++ GY+ + +E+ DV E++++ +
Sbjct: 566 TWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVS 625
Query: 649 VYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHH 708
HSEKLA+AFGLI++ ++I ++ R+C DCH++ K +++V RE++VRD +RFHH
Sbjct: 626 GRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHH 685
Query: 709 FKHGSCSCKDYW 720
FK G CSC DYW
Sbjct: 686 FKLGKCSCGDYW 697
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Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 274 bits (703), Expect = 9e-81
Identities = 169/508 (33%), Positives = 262/508 (51%), Gaps = 45/508 (8%)
Query: 63 GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
G++ +A VF K+P + WN ++ GY++ + +Y ML + VRPD YTFP +L
Sbjct: 135 GELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVL 194
Query: 123 K--GFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD 180
+ G D+A G+E+H HV++FGF+ V V NALI+ Y CG+V AR +FD + D
Sbjct: 195 RTCGGIPDLAR--GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRD 252
Query: 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHR 240
++WNAM SGY + E +LF M V P +TI V+SAC L D +G+ H
Sbjct: 253 CISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHG 312
Query: 241 YVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDM 300
YV + ++ + N+L MY + G G A ++F ++ KD +SWTA+++GY G
Sbjct: 313 YVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNG---- 368
Query: 301 ARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACAN 360
+P++ AL + M+ N+ PDE TI S+L+ACA
Sbjct: 369 -------LPDK--------------------ALETYALMEQDNVSPDEITIASVLSACAC 401
Query: 361 LGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAM 420
LG L++G + ++ + + + V NALI+MY KC ++KA VF + KD +WT++
Sbjct: 402 LGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSI 461
Query: 421 IVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHG 480
I GL +N ++L F QML ++ P+ VT + LSAC G + G+E A + ++ G
Sbjct: 462 IAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACARIGALMCGKEIHAHV-LRTG 519
Query: 481 IEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAA 540
I + ++DL R G +N A + + + + W LL H MA
Sbjct: 520 IGFDGFLPNALLDLYVRCGRMNYAWNQFNS--HEKDVVSWNILLTGYVAHGKGSMAVELF 577
Query: 541 KQILELD--PDNEAVYVLLCNIYAACNR 566
+++E PD LLC AC+R
Sbjct: 578 NRMVESGVNPDEVTFISLLC----ACSR 601
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 207 bits (528), Expect = 1e-56
Identities = 142/466 (30%), Positives = 213/466 (45%), Gaps = 46/466 (9%)
Query: 106 MLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGE 165
M + V D + L + AVE G + L V + NA++S + GE
Sbjct: 77 MQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGE 136
Query: 166 VDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSA 225
+ A +F + D+ +WN + GY + FDE L+ M GV P T VL
Sbjct: 137 LVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRT 196
Query: 226 CAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISW 285
C + DL G+ H +V ++ + NAL MY CG DV+S
Sbjct: 197 CGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG---------------DVVS- 240
Query: 286 TAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345
AR FD+MP RD + W AMI GY E L LF M+ ++
Sbjct: 241 ---------------ARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285
Query: 346 PDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRV 405
PD TI S+++AC LG LG + Y+ K D+ V N+LI MY G +A++V
Sbjct: 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKV 345
Query: 406 FREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMV 465
F M KD +WTAMI G NG DK+L+ ++ M + ++ PDE+T VLSAC G +
Sbjct: 346 FSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDL 405
Query: 466 DEGREY--FADMT--IQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWG 521
D G + A+ I + + N ++++ + +++ALEV N+P K + I W
Sbjct: 406 DVGVKLHELAERKGLISYVVVANA-----LIEMYSKCKCIDKALEVFHNIPEK-DVISWT 459
Query: 522 ALL-GACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNR 566
+++ G +R E + +L L P++ V L +AC R
Sbjct: 460 SIIAGLRLNNRCFEALIFFRQMLLTLKPNS----VTLIAALSACAR 501
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 168 bits (427), Expect = 1e-43
Identities = 114/416 (27%), Positives = 184/416 (44%), Gaps = 39/416 (9%)
Query: 19 LISPIETCESMHQL---KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI 75
+ S I CE + +++H +K G + +V N L+ S G A KVF ++
Sbjct: 291 ITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLS-LGSWGEAEKVFSRM 349
Query: 76 PRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGK 135
W MI GY + + Y M + +V PD T +L ++ G
Sbjct: 350 ETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGV 409
Query: 136 ELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVK 195
+LH + G S V V NALI Y C +D A +F + DV++W ++ +G +
Sbjct: 410 KLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNN 469
Query: 196 QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILEN 255
+ E F +M + P SVT++ LSACA++ L GK H +V I + L N
Sbjct: 470 RCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPN 528
Query: 256 ALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVL 315
AL D+Y CG M +A F N KDV+SW ++TGY+ G+ MA + F++M E
Sbjct: 529 ALLDLYVRCGRMNYAWNQF-NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVE----- 582
Query: 316 WTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG-EWVKTYI 374
S + PDE T +S+L AC+ G + G E+ +
Sbjct: 583 --------------------------SGVNPDEVTFISLLCACSRSGMVTQGLEYFHSME 616
Query: 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM-LRKDKFTWTAMIVGLAINGH 429
+K + ++ ++D+ + G + +A +M + D W A++ I+ H
Sbjct: 617 EKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRH 672
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 2e-36
Identities = 108/455 (23%), Positives = 191/455 (41%), Gaps = 72/455 (15%)
Query: 63 GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLL 122
G + A ++F ++P ++ W T+I G +++ ++ +M + + TF +L
Sbjct: 172 GMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVML 231
Query: 123 KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182
+ + G++LHC VLK G FV ALI Y CG+++ AR +FD + V
Sbjct: 232 RASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTV 291
Query: 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYV 242
WN+M +GY +E L+ EM GV T +++ ++L L+ K+AH
Sbjct: 292 AWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAH--- 348
Query: 243 KECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMAR 302
A GF L+I N TA+V Y G+++ AR
Sbjct: 349 -------------------AGLIRTGFPLDIVAN---------TALVDLYSKWGRMEDAR 380
Query: 303 QYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG 362
FD+MP ++ + W A+I GY R +A+ +F M + P+ T +++L+AC G
Sbjct: 381 NVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSG 440
Query: 363 ALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIV 422
E+ +F+ M + AM
Sbjct: 441 L-----------------------------------SEQGWEIFQSMSENHRIKPRAMHY 465
Query: 423 GLAINGHGDKSL--DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHG 480
I G + L + ++ + RA P + +L+AC ++ GR A + +G
Sbjct: 466 ACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGR--LAAEKL-YG 522
Query: 481 IEPNE-AHYGCMVDLLGRAGHLNEALEVIKNMPMK 514
+ P + +Y +++L +G EA +V++ + K
Sbjct: 523 MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 9e-29
Identities = 80/316 (25%), Positives = 148/316 (46%), Gaps = 28/316 (8%)
Query: 33 KQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSR 92
+Q+H +K G++ + V L+ S+ GD++ A VF +P + WN+M+ GY+
Sbjct: 244 QQLHCCVLKTGVVGDTFVSCALIDMY-SKCGDIEDARCVFDGMPEKTTVAWNSMLAGYAL 302
Query: 93 IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV 152
+ + +Y +M S V D +TF +++ F+R +E K+ H +++ GF +
Sbjct: 303 HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVA 362
Query: 153 QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
AL+ Y G ++ AR +FD + ++++WNA+ +GY + + ++F M +GV
Sbjct: 363 NTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGV 422
Query: 213 LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKEC-KIVPNLILENALTDMYAAC-----GE 266
P VT + VLSAC + G + + E +I P M+ AC G
Sbjct: 423 APNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA--------MHYACMIELLGR 474
Query: 267 MGFALEIFGNIKNKDVIS----WTAIVTGYINRGQVDMARQYFDQM----PER--DYVLW 316
G E + I+ W A++T +++ R +++ PE+ +YV+
Sbjct: 475 EGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVV- 533
Query: 317 TAMIDGYLRVNRFREA 332
+++ Y R EA
Sbjct: 534 --LLNLYNSSGRQAEA 547
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 2e-25
Identities = 77/293 (26%), Positives = 129/293 (44%), Gaps = 22/293 (7%)
Query: 11 STLTQETPLISPIETCESMHQLK---QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKY 67
+ E + S + C + L ++H + GL++ V N L+ +M
Sbjct: 384 NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALI--------EMYS 435
Query: 68 ACK-------VFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPF 120
CK VF IP V W ++I G R+++ LI+ + ++P++ T
Sbjct: 436 KCKCIDKALEVFHNIPEKDVISWTSIIAGL-RLNNRCFEALIFFRQMLLTLKPNSVTLIA 494
Query: 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD 180
L R A+ GKE+H HVL+ G F+ NAL+ Y CG ++ A F+ S++ D
Sbjct: 495 ALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKD 553
Query: 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVG-KRAH 239
VV+WN + +GY + +LF M GV P VT + +L AC++ + G + H
Sbjct: 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFH 613
Query: 240 RYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK-DVISWTAIVTG 291
++ I PNL + D+ G++ A + D W A++
Sbjct: 614 SMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNA 666
|
Length = 857 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 87.1 bits (216), Expect = 2e-20
Identities = 49/132 (37%), Positives = 70/132 (53%), Gaps = 23/132 (17%)
Query: 586 PGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDK 645
PGC E + ++GD SHP +KE E+ +K G +P+ E+ DV E+
Sbjct: 1 PGCVWSEG----KKTLSGDGSHPTSKE------ELFQRIKVEGVVPETKEIGHDVDAEEF 50
Query: 646 ERAVYQ------HSEKLAMAFGLISSGPGVTIRIVKNL-RMCVDCHRMAKLVSMVYDREV 698
+ H+EK A+A+GL+ T RI+K L RMC DCH + ++ RE+
Sbjct: 51 RDNGIKGKLLASHAEKQALAYGLL------TTRIIKVLKRMCGDCHEFFRYIAKYTGREI 104
Query: 699 IVRDKTRFHHFK 710
IVRD +RFHHFK
Sbjct: 105 IVRDPSRFHHFK 116
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 91.9 bits (228), Expect = 5e-19
Identities = 84/352 (23%), Positives = 156/352 (44%), Gaps = 24/352 (6%)
Query: 214 PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEI 273
PT T +++S CA +D+D R R V+E + + L L A G++ E+
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494
Query: 274 FGNIKNK----DVISWTAIVTGYINRGQVDMARQYFDQMPER----DYVLWTAMIDGYLR 325
F + N +V ++ A++ G GQV A + M + D V++ A+I +
Sbjct: 495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ 554
Query: 326 VNRFREALTLFREM--QTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDI 383
A + EM +T I PD T+ +++ ACAN G ++ + V I + +K
Sbjct: 555 SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTP 614
Query: 384 FVGNALIDMYCKCGDVEKAQRVFREMLRK----DKFTWTAMIVGLAINGHG---DKSLDM 436
V ++ + GD + A ++ +M +K D+ ++A++ + GH DK+ ++
Sbjct: 615 EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALV---DVAGHAGDLDKAFEI 671
Query: 437 FSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLG 496
+ I V+Y ++ AC++ + E + D+ + P + ++ L
Sbjct: 672 LQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK-SIKLRPTVSTMNALITALC 730
Query: 497 RAGHLNEALEV---IKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE 545
L +ALEV +K + + PN+I + LL A DA++ Q E
Sbjct: 731 EGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE 782
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 88.8 bits (220), Expect = 4e-18
Identities = 53/194 (27%), Positives = 95/194 (48%), Gaps = 2/194 (1%)
Query: 331 EALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALI 390
+AL L MQ + DE V++ C A+E G V + + + +GNA++
Sbjct: 69 QALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAML 128
Query: 391 DMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV 450
M+ + G++ A VF +M +D F+W ++ G A G+ D++L ++ +ML A + PD
Sbjct: 129 SMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVY 188
Query: 451 TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKN 510
T+ VL C + GRE A + ++ G E + ++ + + G + A V
Sbjct: 189 TFPCVLRTCGGIPDLARGREVHAHV-VRFGFELDVDVVNALITMYVKCGDVVSARLVFDR 247
Query: 511 MPMKPNSIVWGALL 524
MP + + I W A++
Sbjct: 248 MPRR-DCISWNAMI 260
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 88.8 bits (220), Expect = 4e-18
Identities = 84/329 (25%), Positives = 139/329 (42%), Gaps = 32/329 (9%)
Query: 156 LISTYCLCGEVDMARGIF----DVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG 211
LIST G+VD +F + + +V T+ A+ G R Q + +G M K
Sbjct: 478 LISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN 537
Query: 212 VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECK-----IVPNLILENALTDMYAACGE 266
V P V ++SAC + +D RA + E K I P+ I AL A G+
Sbjct: 538 VKPDRVVFNALISACGQSGAVD---RAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594
Query: 267 MGFALEIFGNIKNKDVIS----WTAIVTGYINRGQVDMARQYFDQMPER----DYVLWTA 318
+ A E++ I ++ +T V +G D A +D M ++ D V ++A
Sbjct: 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSA 654
Query: 319 MIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG----ALELGEWVKTYI 374
++D +A + ++ + I+ + S++ AC+N ALEL E +K+
Sbjct: 655 LVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS-- 712
Query: 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM----LRKDKFTWTAMIVGLAINGHG 430
K++ + NALI C+ + KA V EM L + T++ ++V
Sbjct: 713 --IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA 770
Query: 431 DKSLDMFSQMLRASIIPDEVTYVGVLSAC 459
D LD+ SQ I P+ V + C
Sbjct: 771 DVGLDLLSQAKEDGIKPNLVMCRCITGLC 799
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 1e-13
Identities = 52/221 (23%), Positives = 104/221 (47%), Gaps = 5/221 (2%)
Query: 318 AMIDGYLRVNRFREALTLFR--EMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYID 375
+ I+ + R REAL LF E P T +++ AC L ++ + V +++
Sbjct: 92 SQIEKLVACGRHREALELFEILEAGCPFTLPAS-TYDALVEACIALKSIRCVKAVYWHVE 150
Query: 376 KNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLD 435
+ + D ++ N ++ M+ KCG + A+R+F EM ++ +W +I GL G+ ++
Sbjct: 151 SSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFA 210
Query: 436 MFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLL 495
+F +M + T+V +L A G G++ ++ G+ + ++D+
Sbjct: 211 LFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHC-CVLKTGVVGDTFVSCALIDMY 269
Query: 496 GRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMA 536
+ G + +A V MP K ++ W ++L +H +E A
Sbjct: 270 SKCGDIEDARCVFDGMPEK-TTVAWNSMLAGYALHGYSEEA 309
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 2e-13
Identities = 67/231 (29%), Positives = 103/231 (44%), Gaps = 42/231 (18%)
Query: 447 PDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALE 506
D Y ++S C +G VD E F +M G+E N +G ++D RAG + +A
Sbjct: 470 ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-GVEANVHTFGALIDGCARAGQVAKAFG 528
Query: 507 ---VIKNMPMKPNSIVWGALLGAC----RVHRDAE-MAEMAAKQILELDPDNEAVYVLLC 558
++++ +KP+ +V+ AL+ AC V R + +AEM A + +DPD+ V L
Sbjct: 529 AYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKA-ETHPIDPDHITVGAL-- 585
Query: 559 NIYAACN--RWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLK 616
+ A N + D +E+ QMI + IK TP I +N S Q +
Sbjct: 586 -MKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN-----------SCSQKGDWDFA 633
Query: 617 LDEMTSDLKFVGYMPDISEVFL----DVGEEDKERAVYQHSEKLAMAFGLI 663
L + D+K G PD EVF DV H+ L AF ++
Sbjct: 634 L-SIYDDMKKKGVKPD--EVFFSALVDVA---------GHAGDLDKAFEIL 672
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 56.6 bits (138), Expect = 1e-10
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 180 DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAK 228
DVVT+N + GY + + +E KLF EM+++G+ P T +++ K
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.0 bits (126), Expect = 5e-09
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACAN 360
D V + +IDGY + + EAL LF EM+ I+P+ +T ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 4e-08
Identities = 47/210 (22%), Positives = 79/210 (37%), Gaps = 43/210 (20%)
Query: 59 CSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTF 118
CS+KGD +A IY DM K V+PD F
Sbjct: 624 CSQKGDWDFALS-------------------------------IYDDMKKKGVKPDEVFF 652
Query: 119 PFLLK--GFTRDIAVEFG--KELHCHVLKFGFDSSVFVQNALISTYCLCGE----VDMAR 170
L+ G D+ F ++ +K G ++L+ +++
Sbjct: 653 SALVDVAGHAGDLDKAFEILQDARKQGIKLG----TVSYSSLMGACSNAKNWKKALELYE 708
Query: 171 GIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLK 230
I + + V T NA+ + Q + ++ EM+R G+ P ++T ++L A +
Sbjct: 709 DIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKD 768
Query: 231 DLDVGKRAHRYVKECKIVPNLILENALTDM 260
D DVG KE I PNL++ +T +
Sbjct: 769 DADVGLDLLSQAKEDGIKPNLVMCRCITGL 798
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.9 bits (118), Expect = 8e-08
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Query: 382 DIFVGNALIDMYCKCGDVEKAQRVFREMLRK----DKFTWTAMIVGLA 425
D+ N LID YCK G VE+A ++F EM ++ + +T++ +I GL
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 9e-07
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 78 PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGF 125
P V +NT+I GY + + + ++ +M K ++P+ YT+ L+ G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 3e-06
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 412 KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSAC 459
D T+ +I G G +++L +F++M + I P+ TY ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 7e-06
Identities = 13/48 (27%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Query: 280 KDVISWTAIVTGYINRGQVDMARQYFDQMPER----DYVLWTAMIDGY 323
DV+++ ++ GY +G+V+ A + F++M +R + ++ +IDG
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 8e-06
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 314 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDE 348
V + +IDG + R EAL LF+EM+ I PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 5e-05
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 314 VLWTAMIDGYLRVNRFREALTLFREMQTSNI 344
V + ++I GY + + EAL LF+EM+ +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 5e-05
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 387 NALIDMYCKCGDVEKAQRVFREMLRKD 413
N+LI YCK G +E+A +F+EM K
Sbjct: 4 NSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 6e-05
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 182 VTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTS 216
VT+N + G + + +E +LF EM+ +G+ P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.0 bits (95), Expect = 6e-05
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 387 NALIDMYCKCGDVEKAQRVFREM 409
N LID C+ G V++A + EM
Sbjct: 11 NTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 1e-04
Identities = 37/175 (21%), Positives = 72/175 (41%), Gaps = 8/175 (4%)
Query: 111 VRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMAR 170
+ PD+ T L+K V+ KE++ + ++ + V +++ G+ D A
Sbjct: 575 IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFAL 634
Query: 171 GIFDVSYKDDVVTWNAMFSGYKRV----KQFDETRKLFGEMERKGVLPTSVTIVLVLSAC 226
I+D K V FS V D+ ++ + ++G+ +V+ ++ AC
Sbjct: 635 SIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC 694
Query: 227 AKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGF--ALEIFGNIKN 279
+ K+ + +K K+ P + NAL + A C ALE+ +K
Sbjct: 695 SNAKNWKKALELYEDIKSIKLRPTVSTMNAL--ITALCEGNQLPKALEVLSEMKR 747
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 182 VTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212
VT+N++ SGY + + +E +LF EM+ KGV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 7e-04
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 447 PDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVD 493
PD VTY ++ G V+E + F +M + GI+PN Y ++D
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEM-KKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.001
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 314 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRP 346
+ A++ + AL + EM+ S ++P
Sbjct: 2 ETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 415 FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDE 449
T+ +I GL G +++L++F +M I PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.003
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 387 NALIDMYCKCGDVEKAQRVFREMLRK 412
NAL+ K GD + A V EM
Sbjct: 5 NALLLALAKAGDPDLALAVLEEMKAS 30
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 720 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.91 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.91 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.9 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.86 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.85 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.83 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.82 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.81 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.81 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.8 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.79 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.77 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.77 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.76 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.76 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.74 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.69 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.68 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.67 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.64 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.63 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.59 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.56 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.54 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.53 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.51 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.49 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.49 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.48 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.48 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.47 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.46 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.45 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.45 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.43 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.4 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.4 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.39 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.37 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.34 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.32 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.29 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.28 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.27 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.24 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.24 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.24 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.24 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.24 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.24 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.2 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.17 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.17 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.16 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.15 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.11 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.11 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.1 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.07 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.06 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.05 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.05 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.02 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.01 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.0 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.0 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.98 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.97 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.96 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.92 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.92 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.89 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.86 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.84 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.84 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.82 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.82 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.81 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.81 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.78 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.74 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.72 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.71 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.7 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.69 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.67 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.64 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.61 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.59 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.58 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.57 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.54 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.54 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.53 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.53 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.52 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.51 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.5 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.5 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.49 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.44 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.41 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.38 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.38 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.37 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.35 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.35 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.32 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.31 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.3 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.29 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.27 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.26 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.26 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.25 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.16 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.15 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.13 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.13 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.13 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.12 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.12 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.07 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.01 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.0 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.95 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.95 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.91 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.89 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.87 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.87 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.84 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.82 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.82 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.82 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.81 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.81 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.78 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.78 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.75 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.75 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.74 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.73 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.73 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.71 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.7 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.65 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.63 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.62 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.61 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.61 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.6 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.59 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.56 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.51 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.48 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.47 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.46 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.45 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.36 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.35 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.35 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.34 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.33 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.32 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.31 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.31 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.3 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.29 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.23 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.2 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.2 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.16 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.12 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.09 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.04 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.04 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.03 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.93 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.91 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.91 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.88 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.85 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.82 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.8 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.8 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.78 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.76 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.74 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.72 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.71 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.7 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.67 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.67 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.67 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.64 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.64 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.55 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.5 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.49 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.46 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.45 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.41 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.39 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.36 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.15 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.15 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.15 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.09 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.07 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.98 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.96 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.82 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.77 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.76 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.67 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.59 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.43 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.4 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.39 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.39 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.32 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.27 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.15 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.07 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.03 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.0 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.99 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.85 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.76 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.69 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 94.55 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 94.54 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.33 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.32 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.28 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 94.04 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.91 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.87 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 93.81 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.49 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.43 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 93.27 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.21 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.1 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 93.04 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 92.84 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.8 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 92.75 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 92.69 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.68 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 92.55 | |
| PRK09687 | 280 | putative lyase; Provisional | 92.43 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 92.26 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 92.22 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.05 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 91.96 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 91.95 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 91.86 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 91.76 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 91.67 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 91.49 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 91.4 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 91.26 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.16 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 91.12 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 91.11 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 91.09 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.9 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 90.89 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 90.83 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 90.77 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 90.71 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 89.76 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 89.35 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 89.24 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 89.14 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 88.4 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 88.38 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 88.12 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 87.59 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 87.24 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 87.21 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 87.11 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 87.08 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 86.97 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 86.96 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 86.89 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 86.35 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 86.06 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 85.06 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 84.77 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 84.66 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 84.28 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 83.95 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 83.95 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 83.77 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 83.77 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 83.41 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 83.26 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 82.34 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 82.04 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 81.92 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 81.62 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 81.55 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 81.33 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 81.27 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 81.18 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 80.93 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 80.91 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 80.81 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 80.8 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 80.59 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 80.41 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-135 Score=1172.83 Aligned_cols=697 Identities=38% Similarity=0.711 Sum_probs=675.0
Q ss_pred cchhHHhccc---ChHHHHHHHHHHHHhCCCCChhHhhHHhcccccccCChHHHHHHhccCCCCCcchHHHHHHHHHcCC
Q 005000 18 PLISPIETCE---SMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRID 94 (720)
Q Consensus 18 ~~~~~l~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~y~~~g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g 94 (720)
.+..++++|. .+..|.++|+.+++.|..++..++|+||++ |+++|+++.|+++|++|++||+++||+||++|++.|
T Consensus 88 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~-~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g 166 (857)
T PLN03077 88 AYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSM-FVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAG 166 (857)
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHH-HHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCC
Confidence 3677888885 578899999999999999999999999999 999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHh
Q 005000 95 SHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFD 174 (720)
Q Consensus 95 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 174 (720)
++++|+++|++|.+.|+.||.+||++++++|+..+++..+.++|..+++.|+.||+.++|+||++|+++|++++|.++|+
T Consensus 167 ~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~ 246 (857)
T PLN03077 167 YFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFD 246 (857)
T ss_pred CHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHH
Q 005000 175 VSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILE 254 (720)
Q Consensus 175 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 254 (720)
+|+.+|+++||+||.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|+.+.|.++|..+.+.|+.||..+|
T Consensus 247 ~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~ 326 (857)
T PLN03077 247 RMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVC 326 (857)
T ss_pred cCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHh----------------------------------------
Q 005000 255 NALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYIN---------------------------------------- 294 (720)
Q Consensus 255 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~---------------------------------------- 294 (720)
|+|+++|+++|++++|.++|++|..+|+++||++|.+|++
T Consensus 327 n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~ 406 (857)
T PLN03077 327 NSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLD 406 (857)
T ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHH
Confidence 9999999999999999999999999888888887777654
Q ss_pred ------------------------------cCCHHHHHHHHhhCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 005000 295 ------------------------------RGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 344 (720)
Q Consensus 295 ------------------------------~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 344 (720)
+|++++|.++|++|.++|.++||++|.+|+++|+.++|+.+|++|.. ++
T Consensus 407 ~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~ 485 (857)
T PLN03077 407 VGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TL 485 (857)
T ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CC
Confidence 45556666667777778889999999999999999999999999986 59
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHH
Q 005000 345 RPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGL 424 (720)
Q Consensus 345 ~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 424 (720)
+||..||++++.+|++.|.++.+.++|..+.+.|+.++..++|+|+++|+|+|++++|.++|+.+ .+|+++||+||.+|
T Consensus 486 ~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~ 564 (857)
T PLN03077 486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGY 564 (857)
T ss_pred CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 005000 425 AINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEA 504 (720)
Q Consensus 425 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA 504 (720)
+++|+.++|+++|++|.+.|+.||.+||++++.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|+|+|++++|
T Consensus 565 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA 644 (857)
T PLN03077 565 VAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEA 644 (857)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999987899999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCCCcc
Q 005000 505 LEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKK 584 (720)
Q Consensus 505 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 584 (720)
.+++++|+++||..+|++|+++|+.+|+.+.|+.+.+++++++|+++..|+.|+++|++.|+|++|.++++.|+++|++|
T Consensus 645 ~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k 724 (857)
T PLN03077 645 YNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTV 724 (857)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHHhcCcccCCCcccccCChhhhhhhhhhhHHHHHHHHHhhc
Q 005000 585 TPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAFGLIS 664 (720)
Q Consensus 585 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~~~e~la~~~~~~~ 664 (720)
+||+|||++++++|.|.+||.+||+.++||.+|+++..+|++.||.||+..++ ++++++|+..+++||||||+|||||+
T Consensus 725 ~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~ 803 (857)
T PLN03077 725 DPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLIN 803 (857)
T ss_pred CCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999887 55888999999999999999999999
Q ss_pred CCCCCcEEEEcccccccccchhhhhcccccceeEEEecCCcccccCCCcCCCCC
Q 005000 665 SGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCSCKD 718 (720)
Q Consensus 665 ~~~~~~~~~~~nl~~~~~~~~~~~~~s~~~~~~~~~~d~~~~h~~~~g~csc~~ 718 (720)
||||+||||+||||||+|||+++||||++++|+|||||.+|||||++|+|||+|
T Consensus 804 ~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 804 TVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred CCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 999999999999999999999999999999999999999999999999999998
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-124 Score=1058.58 Aligned_cols=613 Identities=33% Similarity=0.611 Sum_probs=598.5
Q ss_pred CCCcchHHHHHHHHHcCCCchHHHHHHHHhHhCC-CCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHH
Q 005000 77 RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSD-VRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNA 155 (720)
Q Consensus 77 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 155 (720)
+++..+|+++|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.+.++|..|.+.|+.||+.++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4678899999999999999999999999998764 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHH
Q 005000 156 LISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVG 235 (720)
Q Consensus 156 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 235 (720)
|+++|+++|++++|.++|++|++||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccc
Q 005000 236 KRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVL 315 (720)
Q Consensus 236 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~ 315 (720)
.++|..+.+.|+.||..++|+|+++|+++|++++|.++|++|.+ +|+++
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-------------------------------~~~vt 292 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE-------------------------------KTTVA 292 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC-------------------------------CChhH
Confidence 99999999999999999999999999999888888888876654 45677
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhh
Q 005000 316 WTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCK 395 (720)
Q Consensus 316 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~ 395 (720)
||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|.++.|.++|..+.+.|+.||..++++|+++|++
T Consensus 293 ~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k 372 (697)
T PLN03081 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372 (697)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHH
Confidence 88888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHH
Q 005000 396 CGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADM 475 (720)
Q Consensus 396 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 475 (720)
+|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||++++.+|++.|++++|.++|+.|
T Consensus 373 ~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m 452 (697)
T PLN03081 373 WGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSM 452 (697)
T ss_pred CCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 005000 476 TIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYV 555 (720)
Q Consensus 476 ~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 555 (720)
.+++|+.|+..+|++|+++|+++|++++|.+++++|+.+|+..+|++|+.+|+.+|+++.|+.+++++++++|++...|.
T Consensus 453 ~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~ 532 (697)
T PLN03081 453 SENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYV 532 (697)
T ss_pred HHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchH
Confidence 87889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHhhhcCChhHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHHhcCcccCCCc
Q 005000 556 LLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISE 635 (720)
Q Consensus 556 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~~d~~~ 635 (720)
.|+++|++.|+|++|.++++.|+++|+++.||+|||++++.+|.|.+||..||+.++|+..++++..+|++.||.||+..
T Consensus 533 ~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~ 612 (697)
T PLN03081 533 VLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENE 612 (697)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChhhhhhhhhhhHHHHHHHHHhhcCCCCCcEEEEcccccccccchhhhhcccccceeEEEecCCcccccCCCcCC
Q 005000 636 VFLDVGEEDKERAVYQHSEKLAMAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFKHGSCS 715 (720)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~s~~~~~~~~~~d~~~~h~~~~g~cs 715 (720)
+++|+++++|+..+++||||||+|||||++|||+||||+||||||+|||+|+||||++++|+|||||.+|||||++|+||
T Consensus 613 ~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~cs 692 (697)
T PLN03081 613 LLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCS 692 (697)
T ss_pred hhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 005000 716 CKDYW 720 (720)
Q Consensus 716 c~~~w 720 (720)
|+|||
T Consensus 693 c~d~w 697 (697)
T PLN03081 693 CGDYW 697 (697)
T ss_pred ccccC
Confidence 99999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-73 Score=660.06 Aligned_cols=666 Identities=22% Similarity=0.300 Sum_probs=581.8
Q ss_pred hhHHhcccChHHHHHHHHHHHHhCCCCChhHhhHHhcccccccCChHHHHHHhccC----CCCCcchHHHHHHHHHcCCC
Q 005000 20 ISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKI----PRPSVCLWNTMIKGYSRIDS 95 (720)
Q Consensus 20 ~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~y~~~g~~~~A~~~f~~~----~~~~~~~~n~li~~~~~~g~ 95 (720)
...+-..+.+..+..+...+.+.|+.|+..+++.++.. +.+.+.++.|.++++.+ +.+++..+|+||.+|++.|+
T Consensus 58 i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~ 136 (857)
T PLN03077 58 LRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRL-CEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGE 136 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHH-HhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCC
Confidence 33444456788999999999999999999999999999 89999999999999754 45889999999999999999
Q ss_pred chHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhc
Q 005000 96 HKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDV 175 (720)
Q Consensus 96 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 175 (720)
.+.|+++|++|. +||.++|++++.+|++.|++++|.++|++|.+.|+.||.++|++++.++++.++++.+.+++..
T Consensus 137 ~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~ 212 (857)
T PLN03077 137 LVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAH 212 (857)
T ss_pred hHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHH
Confidence 999999999996 4899999999999999999999999999999999999999999999999999999999999876
Q ss_pred CC----CCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCCh
Q 005000 176 SY----KDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNL 251 (720)
Q Consensus 176 ~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 251 (720)
+. .+|+.+||++|.+|++.|++++|.++|++|. .||.+||+++|.+|++.|+.++|.+++..|.+.|+.||.
T Consensus 213 ~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~ 288 (857)
T PLN03077 213 VVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDL 288 (857)
T ss_pred HHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh
Confidence 64 4799999999999999999999999999996 478999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhcCC----CCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccchHHHHHHHHhcC
Q 005000 252 ILENALTDMYAACGEMGFALEIFGNIKN----KDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVN 327 (720)
Q Consensus 252 ~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 327 (720)
.+|+.++.++++.|+++.|.+++..|.+ +|+.+||++|.+|++.|++++|.++|++|..+|.++||++|.+|++.|
T Consensus 289 ~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g 368 (857)
T PLN03077 289 MTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNG 368 (857)
T ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCC
Confidence 9999999999999999999999999875 799999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHH
Q 005000 328 RFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFR 407 (720)
Q Consensus 328 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 407 (720)
++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|+.+.+.|+.|+..++++|+++|+++|++++|.++|+
T Consensus 369 ~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~ 448 (857)
T PLN03077 369 LPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFH 448 (857)
T ss_pred CHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHH
Q 005000 408 EMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAH 487 (720)
Q Consensus 408 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 487 (720)
+|.++|+++||+||.+|+++|+.++|+++|++|.. +++||..||++++.+|++.|+++.+.+++..+. +.|+.++..+
T Consensus 449 ~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~-~~g~~~~~~~ 526 (857)
T PLN03077 449 NIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVL-RTGIGFDGFL 526 (857)
T ss_pred hCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH-HhCCCcccee
Confidence 99999999999999999999999999999999986 599999999999999999999999999999997 7899999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCcchHHHHHhHhhhcCC
Q 005000 488 YGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELD-PDNEAVYVLLCNIYAACNR 566 (720)
Q Consensus 488 ~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~ 566 (720)
+++|+++|+++|++++|.++|+++ +||..+|++++.+|.++|+.++|.+++++|.+.+ .+|..+|..+..+|.+.|+
T Consensus 527 ~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~ 604 (857)
T PLN03077 527 PNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGM 604 (857)
T ss_pred chHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCh
Confidence 999999999999999999999998 7899999999999999999999999999998754 2256889999999999999
Q ss_pred hhHHHHHHHHHH-hCCCccCCcccEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHHhcCcccCCCcccccCChhhh
Q 005000 567 WDNFRELRQMIL-DRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDK 645 (720)
Q Consensus 567 ~~~a~~~~~~m~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~~d~~~~~~~~~~~~~ 645 (720)
+++|.++++.|. +.|+.|+.... +..+ ......+..++++..+++ .+..||...+-.-+..|..
T Consensus 605 v~ea~~~f~~M~~~~gi~P~~~~y----~~lv----~~l~r~G~~~eA~~~~~~-------m~~~pd~~~~~aLl~ac~~ 669 (857)
T PLN03077 605 VTQGLEYFHSMEEKYSITPNLKHY----ACVV----DLLGRAGKLTEAYNFINK-------MPITPDPAVWGALLNACRI 669 (857)
T ss_pred HHHHHHHHHHHHHHhCCCCchHHH----HHHH----HHHHhCCCHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHH
Confidence 999999999998 67877654211 1011 111123455666666553 3578887765554554432
Q ss_pred hhhhhhhHHHHH-HHHHhhcCCCCCcEEEEcccccccccchhhhhccccccee--------EEEecCCcccccCCCcCC
Q 005000 646 ERAVYQHSEKLA-MAFGLISSGPGVTIRIVKNLRMCVDCHRMAKLVSMVYDRE--------VIVRDKTRFHHFKHGSCS 715 (720)
Q Consensus 646 ~~~~~~~~e~la-~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~s~~~~~~--------~~~~d~~~~h~~~~g~cs 715 (720)
.+.+-. -|+.| ..+.+.|..++.-+.+..-....|+-.++.+.-..|..+. .|.-+ +..|-|..|.-|
T Consensus 670 ~~~~e~-~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~-~~~~~f~~~d~~ 746 (857)
T PLN03077 670 HRHVEL-GELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVK-GKVHAFLTDDES 746 (857)
T ss_pred cCChHH-HHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEEC-CEEEEEecCCCC
Confidence 222111 12211 2345555555554444444566788888888776554443 33222 467888766544
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-67 Score=593.84 Aligned_cols=508 Identities=19% Similarity=0.250 Sum_probs=450.9
Q ss_pred CCChhHhhHHhcccccccCChHHHHHHhccCCCCCcch-----HHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCcccHH
Q 005000 45 LTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCL-----WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFP 119 (720)
Q Consensus 45 ~~~~~~~~~ll~~~y~~~g~~~~A~~~f~~~~~~~~~~-----~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 119 (720)
.++...+..+++. +.++|++++|+++|++|++++... ++.++.+|.+.|..++|+++|+.|.. ||..||+
T Consensus 367 ~~~~~~~~~~y~~-l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 367 KRKSPEYIDAYNR-LLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCchHHHHHHHH-HHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 4566778888888 888999999999999998765544 45667779999999999999998864 8999999
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC----CCCeeeHHHHHHHHHhCC
Q 005000 120 FLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSY----KDDVVTWNAMFSGYKRVK 195 (720)
Q Consensus 120 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g 195 (720)
.++.+|++.|+++.|.++|+.|.+.|+.||..+||+||++|+++|++++|.++|++|. .||.++||+||.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 9999999999999999999999999999999999999999999999999999999887 478999999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHH--cCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 005000 196 QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKE--CKIVPNLILENALTDMYAACGEMGFALEI 273 (720)
Q Consensus 196 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 273 (720)
++++|+++|++|...|+.||..||+.+|.+|++.|+++.|.++|+.|.+ .|+.||..+|++|+++|+++|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999976 67889999999999999999999888888
Q ss_pred HhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 005000 274 FGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVS 353 (720)
Q Consensus 274 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 353 (720)
|++|.+.+. .++..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.
T Consensus 602 f~~M~e~gi---------------------------~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Tyns 654 (1060)
T PLN03218 602 YQMIHEYNI---------------------------KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSA 654 (1060)
T ss_pred HHHHHHcCC---------------------------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 888766443 45778899999999999999999999999999999999999999
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhcc----CCCHHHHHHHHHHHHHcCC
Q 005000 354 ILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML----RKDKFTWTAMIVGLAINGH 429 (720)
Q Consensus 354 ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~ 429 (720)
++.+|++.|+++.|.+++..|.+.|+.|+..+|++|+++|+++|++++|.++|++|. .||.++||+||.+|++.|+
T Consensus 655 LI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~ 734 (1060)
T PLN03218 655 LVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQ 734 (1060)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 999999999999999999999999999999999999999999999999999999994 6899999999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHH----hcC------
Q 005000 430 GDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLG----RAG------ 499 (720)
Q Consensus 430 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~----~~g------ 499 (720)
.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|. +.|+.||..+|++++.++. +++
T Consensus 735 ~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~-k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v 813 (1060)
T PLN03218 735 LPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAK-EDGIKPNLVMCRCITGLCLRRFEKACALGEPV 813 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999999999999999999999999999999999999999999996 7899999999999987643 222
Q ss_pred -------------CHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCcchHHHHHhHhh
Q 005000 500 -------------HLNEALEVIKNM---PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE-LDPDNEAVYVLLCNIYA 562 (720)
Q Consensus 500 -------------~~~eA~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~ 562 (720)
..++|..+|++| ++.||..||++++.++.+.+..+.+..+++.+.. -.+.+..+|..|++.+.
T Consensus 814 ~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~ 893 (1060)
T PLN03218 814 VSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFG 893 (1060)
T ss_pred hhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhc
Confidence 346899999999 7899999999999887788888888888876543 24556789999999873
Q ss_pred hcCChhHHHHHHHHHHhCCCccCCc
Q 005000 563 ACNRWDNFRELRQMILDRGIKKTPG 587 (720)
Q Consensus 563 ~~g~~~~a~~~~~~m~~~~~~~~~~ 587 (720)
+. .++|..+++.|.+.|+.++..
T Consensus 894 ~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 894 EY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred cC--hHHHHHHHHHHHHcCCCCCcc
Confidence 22 368999999999999987663
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-63 Score=565.23 Aligned_cols=491 Identities=18% Similarity=0.255 Sum_probs=426.4
Q ss_pred ccChHHHHHHHHHHHHhCC-CCChhHhhHHhcccccccCChHHHHHHhccCCCCCcchHHHHHHHHHcCCCchHHHHHHH
Q 005000 26 CESMHQLKQIHSQTIKLGL-LTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYL 104 (720)
Q Consensus 26 ~~~~~~~~~~~~~~~~~g~-~~~~~~~~~ll~~~y~~~g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~ 104 (720)
++++..+.++...|.+.|+ .++...++.++.. |.+.|.+++|.++|+.|+.||..+||.+|.+|++.|++++|.++|+
T Consensus 383 ~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~-~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~ 461 (1060)
T PLN03218 383 DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKA-CKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLR 461 (1060)
T ss_pred CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHH-HHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 4789999999999999996 5677888899999 9999999999999999999999999999999999999999999999
Q ss_pred HhHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC----CCC
Q 005000 105 DMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSY----KDD 180 (720)
Q Consensus 105 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~~ 180 (720)
+|.+.|+.||..+|+++|.+|++.|+++.|.++|++|.+.|+.||..+|++||++|++.|++++|.++|+.|. .||
T Consensus 462 ~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD 541 (1060)
T PLN03218 462 LVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD 541 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999885 489
Q ss_pred eeeHHHHHHHHHhCCChhHHHHHHHHHHH--CCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHH
Q 005000 181 VVTWNAMFSGYKRVKQFDETRKLFGEMER--KGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALT 258 (720)
Q Consensus 181 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 258 (720)
.++||+||.+|++.|++++|.++|++|.. .|+.||..||++++.+|++.|++++|.++|+.|.+.|+.|+..+|+.+|
T Consensus 542 ~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI 621 (1060)
T PLN03218 542 RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAV 621 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHH
Confidence 99999999999999999999999999986 6899999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccchHHHHHHHHhcCChhHHHHHHHH
Q 005000 259 DMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFRE 338 (720)
Q Consensus 259 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 338 (720)
.+|++.|++++|.++|++|...+. .||..+|+++|.+|++.|++++|.++|++
T Consensus 622 ~ay~k~G~~deAl~lf~eM~~~Gv---------------------------~PD~~TynsLI~a~~k~G~~eeA~~l~~e 674 (1060)
T PLN03218 622 NSCSQKGDWDFALSIYDDMKKKGV---------------------------KPDEVFFSALVDVAGHAGDLDKAFEILQD 674 (1060)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCC---------------------------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999999998875332 45666777777777777777777777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhcc----CCCH
Q 005000 339 MQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML----RKDK 414 (720)
Q Consensus 339 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~ 414 (720)
|.+.|+.||..+|+.++.+|++.|+++.|.+++..|.+.|+.||..+|++||.+|++.|++++|.++|++|. .||.
T Consensus 675 M~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~ 754 (1060)
T PLN03218 675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT 754 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 777777777777777777777777777777777777777777777777777777777777777777777773 4677
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh-----------------------cCChhhHHHH
Q 005000 415 FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTH-----------------------TGMVDEGREY 471 (720)
Q Consensus 415 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-----------------------~g~~~~a~~~ 471 (720)
.+|+++|.+|++.|+.++|.++|++|.+.|+.||..+|++++..|.+ .+..++|..+
T Consensus 755 ~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~l 834 (1060)
T PLN03218 755 ITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMV 834 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHH
Confidence 77777777777777777777777777777777777777777765432 1224679999
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005000 472 FADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP---MKPNSIVWGALLGACRVHRDAEMAEMAAKQILELD 547 (720)
Q Consensus 472 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~---~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 547 (720)
|++|. +.|+.||..+|+.++..+.+.+..+.+..+++.|. ..|+..+|++|+.++.+. .++|..++++|.+.+
T Consensus 835 f~eM~-~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 835 YRETI-SAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred HHHHH-HCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 99997 68999999999999999999999999999999884 556789999999998433 468999999998764
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-64 Score=567.41 Aligned_cols=431 Identities=22% Similarity=0.397 Sum_probs=400.9
Q ss_pred ccchhHHhccc---ChHHHHHHHHHHHHhCCCCChhHhhHHhcccccccCChHHHHHHhccCCCCCcchHHHHHHHHHcC
Q 005000 17 TPLISPIETCE---SMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRI 93 (720)
Q Consensus 17 ~~~~~~l~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~y~~~g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~ 93 (720)
..+..++++|. ....+.++|..+.+.|+.||++++|.|+.+ |+++|++++|+++|++|++||+++||+||.+|++.
T Consensus 124 ~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~-y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~ 202 (697)
T PLN03081 124 STYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLM-HVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDA 202 (697)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHH-HhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHC
Confidence 34777888875 578899999999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 005000 94 DSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIF 173 (720)
Q Consensus 94 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f 173 (720)
|++++|+++|++|.+.|+.||..||+.++++|++.|+.+.++++|..+.+.|+.+|..++|+||++|+++|++++|.++|
T Consensus 203 g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf 282 (697)
T PLN03081 203 GNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVF 282 (697)
T ss_pred cCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHH
Q 005000 174 DVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253 (720)
Q Consensus 174 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 253 (720)
++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.||..+
T Consensus 283 ~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~ 362 (697)
T PLN03081 283 DGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVA 362 (697)
T ss_pred HhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccchHHHHHHHHhcCChhHHH
Q 005000 254 ENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREAL 333 (720)
Q Consensus 254 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 333 (720)
+++|+++|+++|++++|.++|++|. ++|.++||+||.+|++.|+.++|+
T Consensus 363 ~~~Li~~y~k~G~~~~A~~vf~~m~-------------------------------~~d~~t~n~lI~~y~~~G~~~~A~ 411 (697)
T PLN03081 363 NTALVDLYSKWGRMEDARNVFDRMP-------------------------------RKNLISWNALIAGYGNHGRGTKAV 411 (697)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHhCC-------------------------------CCCeeeHHHHHHHHHHcCCHHHHH
Confidence 9999999999988888888887655 456688889999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH-cCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhcc-C
Q 005000 334 TLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK-NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML-R 411 (720)
Q Consensus 334 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~ 411 (720)
++|++|.+.|+.||..||+.++.+|++.|.+++|.+++..|.+ .|+.|+..+|+.++++|++.|++++|.++|++|. .
T Consensus 412 ~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~ 491 (697)
T PLN03081 412 EMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFK 491 (697)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCC
Confidence 9999999999999999999999999999999999999999976 6999999999999999999999999999999985 5
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCC
Q 005000 412 KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD-EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIE 482 (720)
Q Consensus 412 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 482 (720)
|+..+|++|+.+|..+|+.+.|..+++++.+ +.|+ ..+|..+++.|++.|++++|.++++.|. +.|+.
T Consensus 492 p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~-~~g~~ 560 (697)
T PLN03081 492 PTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK-RKGLS 560 (697)
T ss_pred CCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHH-HcCCc
Confidence 6888888888888888888888888888764 4554 4578888888888888888888888886 55664
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-31 Score=314.28 Aligned_cols=550 Identities=12% Similarity=0.060 Sum_probs=385.2
Q ss_pred hhHHhcccChHHHHHHHHHHHHhCCCCChhHhhHHhcccccccCChHHHHHHhccCCC---CCcchHHHHHHHHHcCCCc
Q 005000 20 ISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPR---PSVCLWNTMIKGYSRIDSH 96 (720)
Q Consensus 20 ~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~y~~~g~~~~A~~~f~~~~~---~~~~~~n~li~~~~~~g~~ 96 (720)
..++...+....+......+++... .+......+... +.+.|++++|...|+.+.. .+...|+.+...+.+.|++
T Consensus 302 ~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 379 (899)
T TIGR02917 302 GASEYQLGNLEQAYQYLNQILKYAP-NSHQARRLLASI-QLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDF 379 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHH-HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCH
Confidence 3444455677888888877777643 345556666666 7788888888888876542 3556788888888888888
Q ss_pred hHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcC
Q 005000 97 KNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVS 176 (720)
Q Consensus 97 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~ 176 (720)
++|.++|+++.+.. +.+...+..+...+...|+++.|.+.+..+.+.... .......++..|.+.|++++|.++++.+
T Consensus 380 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 457 (899)
T TIGR02917 380 EKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKL 457 (899)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 88888888887653 224455666667777788888888888888775532 3344556677778888888888887765
Q ss_pred CC---CCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHH
Q 005000 177 YK---DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLIL 253 (720)
Q Consensus 177 ~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 253 (720)
.. .+..+|+.+...|...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+..+
T Consensus 458 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 535 (899)
T TIGR02917 458 EKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRA 535 (899)
T ss_pred HHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHH
Confidence 43 355677777888888888888888888777643 2234456666677777788888888888777664 335667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC---CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCccchHHHHHHHHhcC
Q 005000 254 ENALTDMYAACGEMGFALEIFGNIKN---KDVISWTAIVTGYINRGQVDMARQYFDQMPE---RDYVLWTAMIDGYLRVN 327 (720)
Q Consensus 254 ~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g 327 (720)
+..+...|.+.|+.++|...|+++.. .+...+..++..|.+.|++++|..+++.+.+ .+...|..+...|...|
T Consensus 536 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 615 (899)
T TIGR02917 536 ILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAG 615 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 77777777778888888877777643 2445666777777777888888777777653 24556777777777777
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHH
Q 005000 328 RFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFR 407 (720)
Q Consensus 328 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 407 (720)
++++|+..|+++.+.. +.+...+..+...+...|+++.|..++..+.+.. +.+...+..++..+.+.|++++|.++++
T Consensus 616 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 693 (899)
T TIGR02917 616 DLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAK 693 (899)
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888887777777653 3345566667777777777777777777776653 4456667777777777777777777777
Q ss_pred hccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCcc
Q 005000 408 EMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN 484 (720)
Q Consensus 408 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 484 (720)
.+.. .+...|..+...+...|++++|++.|+++... .|+..++..+..++...|++++|.+.++.+.+. .+.+
T Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~ 769 (899)
T TIGR02917 694 SLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPND 769 (899)
T ss_pred HHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCC
Confidence 7743 25556667777777777777777777777764 344456666777777777777777777776532 3445
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhh
Q 005000 485 EAHYGCMVDLLGRAGHLNEALEVIKNM-PMK-PNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYA 562 (720)
Q Consensus 485 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 562 (720)
...+..+...|.+.|++++|.+.|+++ ... ++..+++.+...+...|+ ++|+..+++++++.|+++..+..++.+|.
T Consensus 770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (899)
T TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLV 848 (899)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 666777777777777777777777776 223 356667777777777777 66777777777777777777777777777
Q ss_pred hcCChhHHHHHHHHHHhCCC
Q 005000 563 ACNRWDNFRELRQMILDRGI 582 (720)
Q Consensus 563 ~~g~~~~a~~~~~~m~~~~~ 582 (720)
..|++++|.+.++++.+.+.
T Consensus 849 ~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 849 EKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HcCCHHHHHHHHHHHHhhCC
Confidence 77777777777777766543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-30 Score=309.97 Aligned_cols=542 Identities=13% Similarity=0.076 Sum_probs=406.2
Q ss_pred ccChHHHHHHHHHHHHhCCCCChhHhhHHhcccccccCChHHHHHHhccCC---CCCcchHHHHHHHHHcCCCchHHHHH
Q 005000 26 CESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIP---RPSVCLWNTMIKGYSRIDSHKNGVLI 102 (720)
Q Consensus 26 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~y~~~g~~~~A~~~f~~~~---~~~~~~~n~li~~~~~~g~~~~A~~l 102 (720)
.++.+.+......+++.+... ...+..+-.. +...|+++.|...|+... +.+...+..+...+.+.|++++|+..
T Consensus 274 ~~~~~~A~~~~~~~l~~~~~~-~~~~~~~~~~-~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 351 (899)
T TIGR02917 274 KKNYEDARETLQDALKSAPEY-LPALLLAGAS-EYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIAT 351 (899)
T ss_pred hcCHHHHHHHHHHHHHhCCCc-hhHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 356777777777776655321 1122222333 567788888888887653 23455677777888888888888888
Q ss_pred HHHhHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC---C
Q 005000 103 YLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK---D 179 (720)
Q Consensus 103 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~ 179 (720)
+..+.+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+...+..+...|...|+.++|.+.|+.... .
T Consensus 352 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 429 (899)
T TIGR02917 352 LSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE 429 (899)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc
Confidence 88887654 3456677777788888888888888888887754 33556677777888888888888888876543 2
Q ss_pred CeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHH
Q 005000 180 DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTD 259 (720)
Q Consensus 180 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 259 (720)
+...+..++..+.+.|++++|+.+++.+... .+++..++..+...+...|++++|.+.+..+.+.. +.+...+..+..
T Consensus 430 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 507 (899)
T TIGR02917 430 LGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLAR 507 (899)
T ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHH
Confidence 3445667777888888888888888888764 34566677888888888888888888888887754 335566777888
Q ss_pred HHHhcCCHHHHHHHHhhcCC---CCchhHHHHHHHHHhcCCHHHHHHHHhhCCCC---CccchHHHHHHHHhcCChhHHH
Q 005000 260 MYAACGEMGFALEIFGNIKN---KDVISWTAIVTGYINRGQVDMARQYFDQMPER---DYVLWTAMIDGYLRVNRFREAL 333 (720)
Q Consensus 260 ~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~ 333 (720)
.+...|++++|.+.|+++.. .+..++..+...+.+.|+.++|...|+++... +...+..++..|...|++++|+
T Consensus 508 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 587 (899)
T TIGR02917 508 IDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKAL 587 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHH
Confidence 88888888888888887754 35667788888888888888888888877433 4456777888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccC--
Q 005000 334 TLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR-- 411 (720)
Q Consensus 334 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-- 411 (720)
.+++++.... +.+..++..+...+...|+++.|...+..+.+.. +.+...+..+...|.+.|++++|...|+++.+
T Consensus 588 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 665 (899)
T TIGR02917 588 AILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK 665 (899)
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 8888887653 5566777888888888888888888888887654 44566777888888888888888888887743
Q ss_pred -CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHH
Q 005000 412 -KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGC 490 (720)
Q Consensus 412 -~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 490 (720)
.+..+|..++..+...|++++|.++++.+.+.+ +++...+..+...+...|++++|.+.|+.+.. ..|+...+..
T Consensus 666 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~ 741 (899)
T TIGR02917 666 PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALK---RAPSSQNAIK 741 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCchHHHH
Confidence 356788888888888888888888888888764 34556677777788888888888888888762 3455577777
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChh
Q 005000 491 MVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWD 568 (720)
Q Consensus 491 li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 568 (720)
++.+|.+.|++++|.+.++++ ...| +..++..+...|...|+.++|...++++++..|+++..+..++.++...|+ +
T Consensus 742 l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~ 820 (899)
T TIGR02917 742 LHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-P 820 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-H
Confidence 888888888888888888776 3333 667777888888888888888888888888888888888888888888888 7
Q ss_pred HHHHHHHHHHhC
Q 005000 569 NFRELRQMILDR 580 (720)
Q Consensus 569 ~a~~~~~~m~~~ 580 (720)
+|.+.++++.+.
T Consensus 821 ~A~~~~~~~~~~ 832 (899)
T TIGR02917 821 RALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHHHhh
Confidence 788888877664
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=234.24 Aligned_cols=106 Identities=59% Similarity=1.019 Sum_probs=97.0
Q ss_pred cccEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHHhcCcccCCCcccccCChhhh--------hhhhhhhHHHHHH
Q 005000 587 GCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDK--------ERAVYQHSEKLAM 658 (720)
Q Consensus 587 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~~d~~~~~~~~~~~~~--------~~~~~~~~e~la~ 658 (720)
||||+++ |.|++||.+||+. ++..++...||.|++..+.++++++++ +..+++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 7899887 9999999999998 344467788999999999998888765 5689999999999
Q ss_pred HHHhhcCCCCCcEEEEccc-ccccccchhhhhcccccceeEEEecCCcccccC
Q 005000 659 AFGLISSGPGVTIRIVKNL-RMCVDCHRMAKLVSMVYDREVIVRDKTRFHHFK 710 (720)
Q Consensus 659 ~~~~~~~~~~~~~~~~~nl-~~~~~~~~~~~~~s~~~~~~~~~~d~~~~h~~~ 710 (720)
||||+++ ||+||+ |||+|||+++|+||++++|+|||||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999999 899999 999999999999999999999999999999997
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.9e-23 Score=242.66 Aligned_cols=541 Identities=11% Similarity=0.072 Sum_probs=319.7
Q ss_pred cChHHHHHHHHHHHHhCCCCChhHhhHHhcccccccCChHHHHHHhccCCC--CCcc-hH----------------HHHH
Q 005000 27 ESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPR--PSVC-LW----------------NTMI 87 (720)
Q Consensus 27 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~y~~~g~~~~A~~~f~~~~~--~~~~-~~----------------n~li 87 (720)
.+.+.+++....+...-. .|+.+...+... +.+.|+.++|.+.+++..+ |+.. .+ -.+.
T Consensus 42 ~~~d~a~~~l~kl~~~~p-~~p~~~~~~~~~-~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A 119 (1157)
T PRK11447 42 HREDLVRQSLYRLELIDP-NNPDVIAARFRL-LLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQA 119 (1157)
T ss_pred CChHHHHHHHHHHHccCC-CCHHHHHHHHHH-HHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHH
Confidence 356667777776665532 246667777777 7899999999999988753 3322 22 2334
Q ss_pred HHHHcCCCchHHHHHHHHhHhCCCCCCcc-cHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 005000 88 KGYSRIDSHKNGVLIYLDMLKSDVRPDNY-TFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEV 166 (720)
Q Consensus 88 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 166 (720)
..+.+.|++++|++.|+.+.+.+ +|+.. ............++.++|.+.++.+++.. +.+...+..+...+...|+.
T Consensus 120 ~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~ 197 (1157)
T PRK11447 120 RLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRR 197 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCH
Confidence 46888999999999999998754 23322 11111122234589999999999999865 44667788899999999999
Q ss_pred HHHHHHHhcCCCCCe------eeH-----------------HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHH
Q 005000 167 DMARGIFDVSYKDDV------VTW-----------------NAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVL 223 (720)
Q Consensus 167 ~~A~~~f~~~~~~~~------~~~-----------------~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 223 (720)
++|.+.|+++..... ..| ...+..+-.....+.|...+..+......|+... ....
T Consensus 198 ~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G 276 (1157)
T PRK11447 198 DEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQG 276 (1157)
T ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHH
Confidence 999999987643211 011 1111111111122233333333332222222111 1122
Q ss_pred HHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCc---hhHHHH----------
Q 005000 224 SACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKN--KDV---ISWTAI---------- 288 (720)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~---~~~~~l---------- 288 (720)
..+...|++++|...++.+++.. +.+..++..|...|.+.|++++|...|++..+ |+. ..|..+
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 33445566666666666666542 22455566666666666666666666665543 111 112111
Q ss_pred --HHHHHhcCCHHHHHHHHhhCCCC---CccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH--------
Q 005000 289 --VTGYINRGQVDMARQYFDQMPER---DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSIL-------- 355 (720)
Q Consensus 289 --i~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-------- 355 (720)
...+.+.|++++|+..|++.... +...+..+...+...|++++|++.|++..+.. +.+...+..+.
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~ 434 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSP 434 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCH
Confidence 22345566666666666655432 33445555666666666666666666665532 11222222222
Q ss_pred ----------------------------------HHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHH
Q 005000 356 ----------------------------------TACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEK 401 (720)
Q Consensus 356 ----------------------------------~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 401 (720)
..+...|++++|...+..+++.. +.+..++..+...|.+.|++++
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 23334455555555555555543 2234445555555666666666
Q ss_pred HHHHHHhccC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChH---------HHHHHHHHHHhcCChhhHH
Q 005000 402 AQRVFREMLR--K-DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV---------TYVGVLSACTHTGMVDEGR 469 (720)
Q Consensus 402 A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---------t~~~ll~a~~~~g~~~~a~ 469 (720)
|...|+++.+ | +...+..+...+...|+.++|+..++++......++.. .+..+...+...|+.++|.
T Consensus 514 A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~ 593 (1157)
T PRK11447 514 ADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE 593 (1157)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence 6666655532 1 33334334344445555555555555433221111111 1123344556667777777
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005000 470 EYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELD 547 (720)
Q Consensus 470 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 547 (720)
++++. .+++...+..+.+.|.+.|++++|++.|++. ...| +...+..+...+...|++++|+..++++++..
T Consensus 594 ~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~ 667 (1157)
T PRK11447 594 ALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA 667 (1157)
T ss_pred HHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 66641 2345556677888888888888888888887 4455 57788888888888888888888888888888
Q ss_pred CCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 548 PDNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 548 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
|+++..+..++.++...|++++|.++++.+....
T Consensus 668 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 668 NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 8888888888888888888888888888876643
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5e-22 Score=236.65 Aligned_cols=544 Identities=11% Similarity=0.016 Sum_probs=399.1
Q ss_pred HHhcccChHHHHHHHHHHHHhCCCCChhHh-hHHhcccccccCChHHHHHHhccCCC--C-CcchHHHHHHHHHcCCCch
Q 005000 22 PIETCESMHQLKQIHSQTIKLGLLTNPTVQ-NKLVTFCCSEKGDMKYACKVFRKIPR--P-SVCLWNTMIKGYSRIDSHK 97 (720)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~ll~~~y~~~g~~~~A~~~f~~~~~--~-~~~~~n~li~~~~~~g~~~ 97 (720)
++..-+..+.+.+.+..+++... ++.... ..+... ....|+.++|.+.|+++.. | +...+..+...+.+.|+++
T Consensus 121 ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~-~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~ 198 (1157)
T PRK11447 121 LLATTGRTEEALASYDKLFNGAP-PELDLAVEYWRLV-AKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRD 198 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHHHH-hhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHH
Confidence 45555678888888888876543 232211 111122 2346899999999988763 3 4556888889999999999
Q ss_pred HHHHHHHHhHhCCCC----------------CCcc---cHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 005000 98 NGVLIYLDMLKSDVR----------------PDNY---TFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALIS 158 (720)
Q Consensus 98 ~A~~l~~~m~~~g~~----------------p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 158 (720)
+|++.|+++.+.... ++.. .+...+..+-.......+...+....+....|+.. ...+..
T Consensus 199 eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~ 277 (1157)
T PRK11447 199 EGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGL 277 (1157)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHH
Confidence 999999998754210 0000 11111222222223445555555544433233322 223456
Q ss_pred HHHhcCChHHHHHHHhcCCC---CCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHhhH------------HHH
Q 005000 159 TYCLCGEVDMARGIFDVSYK---DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLP-TSVTI------------VLV 222 (720)
Q Consensus 159 ~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~------------~~l 222 (720)
.+...|++++|...|++... .+...+..+...|.+.|++++|+..|++..+..... +...+ ...
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 77889999999999987644 367789999999999999999999999988754221 11111 112
Q ss_pred HHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCchhHHHHHHHHHhcCCHH
Q 005000 223 LSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKN---KDVISWTAIVTGYINRGQVD 299 (720)
Q Consensus 223 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 299 (720)
...+.+.|++++|...++.+++.. +.+...+..+..+|...|++++|.+.|++..+ .+...+..+...|. .++.+
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~ 435 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPE 435 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHH
Confidence 345678999999999999999974 34667788899999999999999999999875 34556666777664 56789
Q ss_pred HHHHHHhhCCCCC------------ccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 005000 300 MARQYFDQMPERD------------YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG 367 (720)
Q Consensus 300 ~A~~~f~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 367 (720)
+|...++.+.... ...+..+...+...|++++|++.|++.++.. +-+...+..+...+.+.|++++|
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 9999998876432 2235567788889999999999999998863 22456677788889999999999
Q ss_pred HHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCCC----H---------HHHHHHHHHHHHcCChHHHH
Q 005000 368 EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKD----K---------FTWTAMIVGLAINGHGDKSL 434 (720)
Q Consensus 368 ~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~----~---------~~~~~li~~~~~~g~~~~A~ 434 (720)
...++.+.+.. +.+...+..+...+.+.|+.++|...++.+.... . ..+..+...+...|+.++|+
T Consensus 515 ~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~ 593 (1157)
T PRK11447 515 DALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE 593 (1157)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence 99999988754 3455555566667788999999999999885421 1 11234566788999999999
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 005000 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PM 513 (720)
Q Consensus 435 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~ 513 (720)
++++. .+++...+..+...+...|++++|+..|+.+.+. -+.+...+..++.+|...|++++|++.++.. ..
T Consensus 594 ~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 594 ALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 99872 2344456777888899999999999999998732 2335788889999999999999999999987 34
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc------chHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 514 KP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE------AVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 514 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
.| +...+..+..++...|++++|...++++++..|+++ ..+..++.++...|++++|.+.++....
T Consensus 667 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 667 ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55 466778888889999999999999999999877654 3566779999999999999999888753
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-19 Score=206.75 Aligned_cols=499 Identities=13% Similarity=0.064 Sum_probs=338.1
Q ss_pred ccCChHHHHHHhccCCC---CCcchHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCChHHHHHH
Q 005000 61 EKGDMKYACKVFRKIPR---PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKEL 137 (720)
Q Consensus 61 ~~g~~~~A~~~f~~~~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 137 (720)
..|++++|...|+...+ .+..++..|...|.+.|++++|+..+++..+.. |+...|..++..+ ++.++|..+
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA~~~ 130 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKSVTT 130 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhHHHH
Confidence 45999999999987542 346678889999999999999999999998854 5555555555333 888899999
Q ss_pred HHHHHHhCCCCChhHHHHHHHH--------HHhcCChHHHHHHHhcCCCCC--eeeHH-HHHHHHHhCCChhHHHHHHHH
Q 005000 138 HCHVLKFGFDSSVFVQNALIST--------YCLCGEVDMARGIFDVSYKDD--VVTWN-AMFSGYKRVKQFDETRKLFGE 206 (720)
Q Consensus 138 ~~~~~~~g~~~~~~~~~~li~~--------y~~~g~~~~A~~~f~~~~~~~--~~~~~-~li~~~~~~g~~~~A~~l~~~ 206 (720)
++++++... .+..++..+... |.+.+....|++ .....++ ..... .+...|.+.|++++|++++.+
T Consensus 131 ye~l~~~~P-~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~ 207 (987)
T PRK09782 131 VEELLAQQK-ACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNE 207 (987)
T ss_pred HHHHHHhCC-CChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 999998653 344555555554 777777777776 3333333 33333 347899999999999999999
Q ss_pred HHHCCCCCCHhhHHHHHHHHhc-CCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCC-----C
Q 005000 207 MERKGVLPTSVTIVLVLSACAK-LKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKN-----K 280 (720)
Q Consensus 207 m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~ 280 (720)
+.+.+.. +..-...+-.++.. .++ +.+..++.. .+..+..+...+++.|.+.|+.++|.++++++.. +
T Consensus 208 L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~ 281 (987)
T PRK09782 208 ARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDA 281 (987)
T ss_pred HHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCC
Confidence 9988643 33335555556666 466 666666442 3346888889999999999999999999988864 2
Q ss_pred CchhHHH------------------------------HHHHHHh------------------------------------
Q 005000 281 DVISWTA------------------------------IVTGYIN------------------------------------ 294 (720)
Q Consensus 281 ~~~~~~~------------------------------li~~~~~------------------------------------ 294 (720)
+..+|-- ++.-+.+
T Consensus 282 ~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 361 (987)
T PRK09782 282 QEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEA 361 (987)
T ss_pred ccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHH
Confidence 2222211 1222233
Q ss_pred ---------------------------cCCHHHHHHHHhhCCCC--Cc----cchHHHHHHHHhcCC---hhHHHHH---
Q 005000 295 ---------------------------RGQVDMARQYFDQMPER--DY----VLWTAMIDGYLRVNR---FREALTL--- 335 (720)
Q Consensus 295 ---------------------------~g~~~~A~~~f~~~~~~--~~----~~~~~li~~~~~~g~---~~~A~~~--- 335 (720)
.|+.++|.++|+..... +. ..-+-++..|.+.+. ..+++.+
T Consensus 362 ~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ 441 (987)
T PRK09782 362 LRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKP 441 (987)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccc
Confidence 33444444444443321 11 112233344444333 2222211
Q ss_pred -------------------HHHHHH-CCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhh
Q 005000 336 -------------------FREMQT-SNIRP---DEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDM 392 (720)
Q Consensus 336 -------------------~~~m~~-~g~~p---~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 392 (720)
+..... .+..| +...+..+..++.. +..+.|...+....... |+......+...
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~a 518 (987)
T PRK09782 442 LPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQ 518 (987)
T ss_pred cccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHH
Confidence 000000 01111 23333333333333 55556666555555433 443333334445
Q ss_pred hhhcCCHHHHHHHHHhccC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHhcCChhhHH
Q 005000 393 YCKCGDVEKAQRVFREMLR--KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDE-VTYVGVLSACTHTGMVDEGR 469 (720)
Q Consensus 393 y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~ 469 (720)
+.+.|++++|...|+++.. ++...+..+...+.+.|+.++|...|++.++.. |+. ..+..+.......|++++|.
T Consensus 519 l~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl 596 (987)
T PRK09782 519 AYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELAL 596 (987)
T ss_pred HHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHH
Confidence 5688999999999987743 344566777778888999999999999988753 444 33333444555679999999
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005000 470 EYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELD 547 (720)
Q Consensus 470 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 547 (720)
..+++.. .+.|+...|..+..++.+.|++++|++.+++. ...| +...++.+..++...|++++|+..++++++++
T Consensus 597 ~~~~~AL---~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 597 NDLTRSL---NIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL 673 (987)
T ss_pred HHHHHHH---HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999886 44678889999999999999999999999987 5667 56677888889999999999999999999999
Q ss_pred CCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 548 PDNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 548 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
|+++..+..++.+|...|++++|...+++..+..
T Consensus 674 P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 674 PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999887643
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.9e-19 Score=201.49 Aligned_cols=538 Identities=10% Similarity=-0.007 Sum_probs=375.7
Q ss_pred cChHHHHHHHHHHHHhCCCCChhHhhHHhcccccccCChHHHHHHhccCCC--CCcchHHHHHHHHHcCCCchHHHHHHH
Q 005000 27 ESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPR--PSVCLWNTMIKGYSRIDSHKNGVLIYL 104 (720)
Q Consensus 27 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~y~~~g~~~~A~~~f~~~~~--~~~~~~n~li~~~~~~g~~~~A~~l~~ 104 (720)
++...+......+++..... ..+...|... |.+.|+.++|+..+++..+ |+-..|..++..+ +++.+|..+|+
T Consensus 58 Gd~~~A~~~l~~Al~~dP~n-~~~~~~LA~~-yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye 132 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPDN-IPLTLYLAEA-YRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVE 132 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHH-HHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHH
Confidence 46777888888887776543 7777888888 9999999999999987643 3323333333333 77777778887
Q ss_pred HhHhCCC------------------------------------CC--CcccHHHH-HHHHhccCChHHHHHHHHHHHHhC
Q 005000 105 DMLKSDV------------------------------------RP--DNYTFPFL-LKGFTRDIAVEFGKELHCHVLKFG 145 (720)
Q Consensus 105 ~m~~~g~------------------------------------~p--~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~g 145 (720)
++..... .| +..+.... .+.+...++++.+..++..+.+.+
T Consensus 133 ~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~ 212 (987)
T PRK09782 133 ELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN 212 (987)
T ss_pred HHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC
Confidence 7765431 11 12222222 455666777777888888877766
Q ss_pred CCCChhHHHHHHHHHHh-cCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCC-CCHhhHHHH-
Q 005000 146 FDSSVFVQNALISTYCL-CGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVL-PTSVTIVLV- 222 (720)
Q Consensus 146 ~~~~~~~~~~li~~y~~-~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~l- 222 (720)
. .+..-...|..+|.. .++ +.|..++....+.|...+..+...|.+.|+.++|.++++++...-.. |+..++.-.
T Consensus 213 p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l 290 (987)
T PRK09782 213 T-LSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLL 290 (987)
T ss_pred C-CCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHH
Confidence 3 334445566667776 366 77777766544567788889999999999999999999987654322 333333222
Q ss_pred -----------------------------HHHHhcCCCchHHHHHHH-----------------------------HHHH
Q 005000 223 -----------------------------LSACAKLKDLDVGKRAHR-----------------------------YVKE 244 (720)
Q Consensus 223 -----------------------------l~~~~~~~~~~~a~~~~~-----------------------------~~~~ 244 (720)
+..+.+.++++.+.++.. .+.+
T Consensus 291 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~ 370 (987)
T PRK09782 291 SKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQ 370 (987)
T ss_pred HhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHh
Confidence 222333333433333311 1111
Q ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCC-C-C----chhHHHHHHHHHhcCC---HHHHHHH-----------
Q 005000 245 CKIVPNLILENALTDMYAACGEMGFALEIFGNIKN-K-D----VISWTAIVTGYINRGQ---VDMARQY----------- 304 (720)
Q Consensus 245 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~-~----~~~~~~li~~~~~~g~---~~~A~~~----------- 304 (720)
. .+.+....--+.-...+.|+.++|.++|+.... + + ...-+-++..|.+.+. ..++..+
T Consensus 371 ~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 449 (987)
T PRK09782 371 Q-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQ 449 (987)
T ss_pred c-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHH
Confidence 1 011222222233344567889999999988765 2 2 2233356677766655 2222222
Q ss_pred --------------HhhCCC---C--CccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH
Q 005000 305 --------------FDQMPE---R--DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALE 365 (720)
Q Consensus 305 --------------f~~~~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 365 (720)
+..... . +...|..+..++.. ++.++|+..|.+.... .|+......+..++...|+++
T Consensus 450 ~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~e 526 (987)
T PRK09782 450 WQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYA 526 (987)
T ss_pred HHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHH
Confidence 222221 2 45567888887776 8999999988888765 467665444555567899999
Q ss_pred HHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHH---HHHHHHcCChHHHHHHHHHHHH
Q 005000 366 LGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAM---IVGLAINGHGDKSLDMFSQMLR 442 (720)
Q Consensus 366 ~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~ 442 (720)
.|...+..+... +|+...+..+...+.+.|++++|...|+...+.++..++.. .......|++++|+..|++..+
T Consensus 527 eAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~ 604 (987)
T PRK09782 527 TALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN 604 (987)
T ss_pred HHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999999987654 34445566778889999999999999998865543333333 3334455999999999999997
Q ss_pred CCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHH
Q 005000 443 ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIV 519 (720)
Q Consensus 443 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~ 519 (720)
. .|+...+..+..++.+.|++++|...+++... ..| +...++.+...+...|++++|++.+++. ...| +...
T Consensus 605 l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a 679 (987)
T PRK09782 605 I--APSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPAL 679 (987)
T ss_pred h--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 5 67788899999999999999999999999863 345 5678888999999999999999999987 5566 6788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCCC
Q 005000 520 WGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGI 582 (720)
Q Consensus 520 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 582 (720)
+..+..++...|++++|+..++++++++|++..+....+++..+..+++.|.+-+++.-...+
T Consensus 680 ~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 680 IRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 999999999999999999999999999999999999999999999999999998776655443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-20 Score=186.30 Aligned_cols=447 Identities=13% Similarity=0.126 Sum_probs=323.4
Q ss_pred HHHHHHHcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 005000 85 TMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCG 164 (720)
Q Consensus 85 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 164 (720)
.|..-..+.|++++|.+--...-+.+ +.+......+-..+.+..+++...+--...++.. +.-..+|..+.+.+-..|
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhc
Confidence 34445567788888877655443333 2233334334444555555555444433333322 223456777777777778
Q ss_pred ChHHHHHHHhcCCC---CCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHH-HhcCCCchHHHHHHH
Q 005000 165 EVDMARGIFDVSYK---DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSA-CAKLKDLDVGKRAHR 240 (720)
Q Consensus 165 ~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~ 240 (720)
++++|..+++.+.+ ..+..|..+..++...|+.+.|.+.|.+.++. .|+.+...+-+.. ....|++++|...+.
T Consensus 131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 88888777776543 34567777777777777777777777776653 4554433322222 223455555555555
Q ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCc---cchH
Q 005000 241 YVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY---VLWT 317 (720)
Q Consensus 241 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~---~~~~ 317 (720)
+.++.. |. =.+.|+.|...+-..|++-.|+..|++...-|+ .+|-
T Consensus 209 kAi~~q--p~------------------------------fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYi 256 (966)
T KOG4626|consen 209 KAIETQ--PC------------------------------FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYI 256 (966)
T ss_pred HHHhhC--Cc------------------------------eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHh
Confidence 554432 11 134555555555566666666666666554433 4678
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhc
Q 005000 318 AMIDGYLRVNRFREALTLFREMQTSNIRPD-EFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKC 396 (720)
Q Consensus 318 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~ 396 (720)
.|...|-..+.+++|+..|.+.... .|+ ...+..+...|-..|.++.|...++..++.. +.-...|+.|..++-..
T Consensus 257 NLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~ 333 (966)
T KOG4626|consen 257 NLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDK 333 (966)
T ss_pred hHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhc
Confidence 8888888999999999988887754 554 4566667777788999999999999888764 33467899999999999
Q ss_pred CCHHHHHHHHHhccC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHhcCChhhHHHHH
Q 005000 397 GDVEKAQRVFREMLR--K-DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDE-VTYVGVLSACTHTGMVDEGREYF 472 (720)
Q Consensus 397 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~ 472 (720)
|++.+|...+++... + ...+.+.|...|...|..++|..+|....+ +.|.- ..++.|...|-..|++++|+..+
T Consensus 334 G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Y 411 (966)
T KOG4626|consen 334 GSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCY 411 (966)
T ss_pred cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHH
Confidence 999999999998853 2 466888999999999999999999999887 56665 57889999999999999999999
Q ss_pred HHHHHHcCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005000 473 ADMTIQHGIEPN-EAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN-SIVWGALLGACRVHRDAEMAEMAAKQILELDPD 549 (720)
Q Consensus 473 ~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 549 (720)
++.. .++|+ ...|+.|...|-..|+.+.|.+.+.+. .+.|. ....+.|.+.+...|++.+|+..|+.+++++|+
T Consensus 412 keal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 412 KEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 9875 67887 578999999999999999999999987 67775 568899999999999999999999999999999
Q ss_pred CcchHHHHHhHhhhcCChhHHHHHHH
Q 005000 550 NEAVYVLLCNIYAACNRWDNFRELRQ 575 (720)
Q Consensus 550 ~~~~~~~l~~~~~~~g~~~~a~~~~~ 575 (720)
.+.+|..++..+.-..+|.+-.+.++
T Consensus 489 fpdA~cNllh~lq~vcdw~D~d~~~~ 514 (966)
T KOG4626|consen 489 FPDAYCNLLHCLQIVCDWTDYDKRMK 514 (966)
T ss_pred CchhhhHHHHHHHHHhcccchHHHHH
Confidence 99999999988887788877444333
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-18 Score=174.82 Aligned_cols=357 Identities=12% Similarity=0.126 Sum_probs=278.3
Q ss_pred HhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCc--hhH-HHHHHHH
Q 005000 216 SVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDV--ISW-TAIVTGY 292 (720)
Q Consensus 216 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~--~~~-~~li~~~ 292 (720)
..+|..+.+.+-..|+++.|...++.+++.... .+..|..+..++...|+.+.|.+.|.+..+-|+ ... +.+...+
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLL 194 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHH
Confidence 345555555555555555555555555554211 344555555556666666666665555444222 211 2233333
Q ss_pred HhcCCHHHHHHHHhhCCCC---CccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHH
Q 005000 293 INRGQVDMARQYFDQMPER---DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPD-EFTIVSILTACANLGALELGE 368 (720)
Q Consensus 293 ~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~ 368 (720)
-..|++++|...+.+..+. -.+.|+.|...+-.+|+...|+..|++..+. .|+ ...|..+-..+...+.++.|.
T Consensus 195 ka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Av 272 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAV 272 (966)
T ss_pred HhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHH
Confidence 4457777777776665443 3578999999999999999999999999874 555 456777888888888888888
Q ss_pred HHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 005000 369 WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK---DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASI 445 (720)
Q Consensus 369 ~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 445 (720)
..+..+.... +....++..|...|...|.++-|+..+++..+. =...|+.|..++-..|+..+|.+.+.+.+..
T Consensus 273 s~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l-- 349 (966)
T KOG4626|consen 273 SCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL-- 349 (966)
T ss_pred HHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--
Confidence 8877776643 445677888999999999999999999998643 3579999999999999999999999999884
Q ss_pred CCCh-HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHH
Q 005000 446 IPDE-VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN-EAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN-SIVWG 521 (720)
Q Consensus 446 ~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~ 521 (720)
.|+. ...+.|...+...|.+++|..+|.... .+.|. ....+.|...|-.+|++++|...+++. .++|+ ..+++
T Consensus 350 ~p~hadam~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~ 426 (966)
T KOG4626|consen 350 CPNHADAMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALS 426 (966)
T ss_pred CCccHHHHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHH
Confidence 5655 578889999999999999999999875 45565 567889999999999999999999997 78896 56899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 522 ALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 522 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
.+...|...|+.+.|.+.+.+++..+|.-+.++..|+.+|-..|+..+|+.-++...+-.
T Consensus 427 NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 427 NMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred hcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999999999999999999887643
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-17 Score=185.44 Aligned_cols=416 Identities=12% Similarity=-0.003 Sum_probs=262.8
Q ss_pred HHHHHHhcCChHHHHHHHhcCCC--CCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCch
Q 005000 156 LISTYCLCGEVDMARGIFDVSYK--DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLD 233 (720)
Q Consensus 156 li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 233 (720)
+...|.+.|++++|.+.|++... |+...|..+..+|.+.|++++|++.+....+.. +.+...+..+..++...|+++
T Consensus 133 ~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~ 211 (615)
T TIGR00990 133 KGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYA 211 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 34445555555555555554322 344455555555556666666666665555432 112334555555555666666
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCc
Q 005000 234 VGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDY 313 (720)
Q Consensus 234 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~ 313 (720)
+|..-+..+...+...+... ..++.-+........+...++.- ..+..++..+.. |........+..-++...+.+.
T Consensus 212 eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 288 (615)
T TIGR00990 212 DALLDLTASCIIDGFRNEQS-AQAVERLLKKFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLEDSNELDE 288 (615)
T ss_pred HHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhccccccc
Confidence 65555544433321111111 11111111111112223333221 122223332222 2221111111111111111111
Q ss_pred c---chHHHHHHH---HhcCChhHHHHHHHHHHHCC-CCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhH
Q 005000 314 V---LWTAMIDGY---LRVNRFREALTLFREMQTSN-IRPD-EFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFV 385 (720)
Q Consensus 314 ~---~~~~li~~~---~~~g~~~~A~~~~~~m~~~g-~~p~-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~ 385 (720)
. .+..+...+ ...+++++|++.|++....+ ..|+ ...+..+...+...|+++.|...+..+++.. +.....
T Consensus 289 ~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~ 367 (615)
T TIGR00990 289 ETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQS 367 (615)
T ss_pred ccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHH
Confidence 1 111111111 23468899999999988765 2343 3456666666778899999999999888764 334567
Q ss_pred hhHHhhhhhhcCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHh
Q 005000 386 GNALIDMYCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD-EVTYVGVLSACTH 461 (720)
Q Consensus 386 ~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~ 461 (720)
+..+...|...|++++|...|++..+ .+...|..+...+...|++++|+..|++.++. .|+ ...+..+..++..
T Consensus 368 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~ 445 (615)
T TIGR00990 368 YIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYK 445 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHH
Confidence 78888999999999999999998753 36788999999999999999999999999885 454 4567778888999
Q ss_pred cCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-H-------HHHHHHHHHHhcCC
Q 005000 462 TGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPNS-I-------VWGALLGACRVHRD 532 (720)
Q Consensus 462 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~-~-------~~~~ll~~~~~~g~ 532 (720)
.|++++|...|++.... .+.+...|+.+..+|...|++++|.+.|++. .+.|+. . .++..+..+...|+
T Consensus 446 ~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~ 523 (615)
T TIGR00990 446 EGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQD 523 (615)
T ss_pred CCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhh
Confidence 99999999999998632 2345788899999999999999999999986 444421 1 12222233445699
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 533 AEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 533 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
+++|...++++++++|++...+..++.+|.+.|++++|.+.+++..+.
T Consensus 524 ~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 524 FIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988653
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.9e-18 Score=182.35 Aligned_cols=268 Identities=15% Similarity=0.103 Sum_probs=186.9
Q ss_pred chHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhh
Q 005000 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPD---EFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391 (720)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 391 (720)
+|..+...+...|++++|+.+++.+...+..++ ...+..+...+...|+++.|..++..+.+.. +.+..+++.++.
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~ 149 (389)
T PRK11788 71 LHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLE 149 (389)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHH
Confidence 445555555555555556555555554322111 1234444555555566666666665555432 334556666777
Q ss_pred hhhhcCCHHHHHHHHHhccCCC--------HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhc
Q 005000 392 MYCKCGDVEKAQRVFREMLRKD--------KFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD-EVTYVGVLSACTHT 462 (720)
Q Consensus 392 ~y~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~ 462 (720)
.|.+.|++++|.+.|+.+.+.+ ...|..+...+.+.|++++|+..|+++.+.. |+ ...+..+...+...
T Consensus 150 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~ 227 (389)
T PRK11788 150 IYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD--PQCVRASILLGDLALAQ 227 (389)
T ss_pred HHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC--cCCHHHHHHHHHHHHHC
Confidence 7777777777777777664321 1234566777788889999999999888753 44 45677777888889
Q ss_pred CChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005000 463 GMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPNSIVWGALLGACRVHRDAEMAEMAAK 541 (720)
Q Consensus 463 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 541 (720)
|++++|.++|+++... +.......++.++.+|.+.|++++|.+.++++ ...|+...+..+...+.+.|++++|...++
T Consensus 228 g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~ 306 (389)
T PRK11788 228 GDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLR 306 (389)
T ss_pred CCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999988632 21222456788889999999999999999987 456777777888899999999999999999
Q ss_pred HHHhcCCCCcchHHHHHhHhhh---cCChhHHHHHHHHHHhCCCccCCc
Q 005000 542 QILELDPDNEAVYVLLCNIYAA---CNRWDNFRELRQMILDRGIKKTPG 587 (720)
Q Consensus 542 ~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~ 587 (720)
++++..|++. .+..+...+.. .|+.+++..+++.|.+++++++|.
T Consensus 307 ~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 307 EQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 9999999876 44444444432 568999999999999999988886
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-17 Score=177.99 Aligned_cols=290 Identities=13% Similarity=0.086 Sum_probs=199.1
Q ss_pred hcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHh
Q 005000 227 AKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFD 306 (720)
Q Consensus 227 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~ 306 (720)
...|+++.|...+..+++.+ +.+..++..+...|...|++++|..+++.+.......-
T Consensus 46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~--------------------- 103 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTR--------------------- 103 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCH---------------------
Confidence 34455556666666655542 12334555555555555555555555555433110000
Q ss_pred hCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC----
Q 005000 307 QMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKND---- 382 (720)
Q Consensus 307 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~---- 382 (720)
......+..++..|.+.|++++|+.+|+++.+.. +++..++..+...+...|+++.|.+.+..+.+.+..+.
T Consensus 104 ---~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 179 (389)
T PRK11788 104 ---EQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEI 179 (389)
T ss_pred ---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHH
Confidence 0001235556666666666666666666666542 33455566666666666666666666666665442221
Q ss_pred hhHhhHHhhhhhhcCCHHHHHHHHHhccCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 005000 383 IFVGNALIDMYCKCGDVEKAQRVFREMLRK---DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSAC 459 (720)
Q Consensus 383 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 459 (720)
...+..+...|.+.|++++|.+.|+++.+. +...+..+...|.+.|++++|+++|+++...+..+...++..+..++
T Consensus 180 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~ 259 (389)
T PRK11788 180 AHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECY 259 (389)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHH
Confidence 123456777888999999999999988532 46678888899999999999999999998764322245678889999
Q ss_pred HhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh---cCCHHH
Q 005000 460 THTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPNSIVWGALLGACRV---HRDAEM 535 (720)
Q Consensus 460 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~ll~~~~~---~g~~~~ 535 (720)
...|++++|.+.++++.+ ..|+...+..++..|.+.|++++|.++++++ ...|+..+++.++..+.. +|+.++
T Consensus 260 ~~~g~~~~A~~~l~~~~~---~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~ 336 (389)
T PRK11788 260 QALGDEAEGLEFLRRALE---EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKE 336 (389)
T ss_pred HHcCCHHHHHHHHHHHHH---hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchh
Confidence 999999999999999863 3577777788999999999999999999876 667999999988887664 568888
Q ss_pred HHHHHHHHHh
Q 005000 536 AEMAAKQILE 545 (720)
Q Consensus 536 a~~~~~~~~~ 545 (720)
+...++++++
T Consensus 337 a~~~~~~~~~ 346 (389)
T PRK11788 337 SLLLLRDLVG 346 (389)
T ss_pred HHHHHHHHHH
Confidence 8888888875
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.5e-16 Score=172.66 Aligned_cols=414 Identities=11% Similarity=0.015 Sum_probs=259.4
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCeeeHHHHHHHHHhCCCh
Q 005000 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK---DDVVTWNAMFSGYKRVKQF 197 (720)
Q Consensus 121 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~ 197 (720)
.-..+.+.|+++.|...|..+++. .|+...|..+...|.+.|++++|.+.++...+ .+...|..+..+|...|++
T Consensus 133 ~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~ 210 (615)
T TIGR00990 133 KGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKY 210 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Confidence 334445566666666666666553 34555566666666666666666666654332 2344566666666666666
Q ss_pred hHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 005000 198 DETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNI 277 (720)
Q Consensus 198 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 277 (720)
++|+.-|......+-. +......++..... ..+........+.. +++...+..+.+ |........+..-++..
T Consensus 211 ~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 211 ADALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLEDS 283 (615)
T ss_pred HHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhcc
Confidence 6666666544332211 11111111111111 11112222222221 111111111111 11111111111111111
Q ss_pred CCCCc---hhHHHHHHH---HHhcCCHHHHHHHHhhCCCC------CccchHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 005000 278 KNKDV---ISWTAIVTG---YINRGQVDMARQYFDQMPER------DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR 345 (720)
Q Consensus 278 ~~~~~---~~~~~li~~---~~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 345 (720)
.+.+. ..+..+... ....+++++|.+.|+...+. +...|+.+...+...|++++|+..|++.... .
T Consensus 284 ~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~ 361 (615)
T TIGR00990 284 NELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--D 361 (615)
T ss_pred cccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--C
Confidence 11111 111111111 12246677888887766532 3456788888888899999999999988875 4
Q ss_pred CC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCC---CHHHHHHHH
Q 005000 346 PD-EFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK---DKFTWTAMI 421 (720)
Q Consensus 346 p~-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li 421 (720)
|+ ...+..+...+...|+++.|...+..+++.. +.+..++..+...|...|++++|...|++..+. +...|..+.
T Consensus 362 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la 440 (615)
T TIGR00990 362 PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLG 440 (615)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHH
Confidence 44 5567777777888899999999998888764 456778888999999999999999999988532 566788888
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccH--------HHHHHHH
Q 005000 422 VGLAINGHGDKSLDMFSQMLRASIIPD-EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNE--------AHYGCMV 492 (720)
Q Consensus 422 ~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--------~~~~~li 492 (720)
..+.+.|++++|+..|++.+.. .|+ ...+..+..++...|++++|+..|+.... +.|+. ..++...
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~ 515 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKAL 515 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHH
Confidence 8999999999999999998874 444 56788888899999999999999998762 33321 1122223
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 005000 493 DLLGRAGHLNEALEVIKNM-PMKPN-SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551 (720)
Q Consensus 493 ~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 551 (720)
..+...|++++|.+++++. ...|+ ...+..+...+...|++++|...+++++++.+...
T Consensus 516 ~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 516 ALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 3445579999999999986 56664 56788999999999999999999999999887643
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.7e-16 Score=177.46 Aligned_cols=402 Identities=10% Similarity=-0.006 Sum_probs=252.7
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 005000 148 SSVFVQNALISTYCLCGEVDMARGIFDVSYK---DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLS 224 (720)
Q Consensus 148 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 224 (720)
.+.....-.+......|+.++|.+++..... .+...+..+...+.+.|++++|+++|++..... +.+......+..
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3444445556666777888888888876543 233347777777888888888888888776642 223444555666
Q ss_pred HHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCC---CchhHHHHHHHHHhcCCHHHH
Q 005000 225 ACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK---DVISWTAIVTGYINRGQVDMA 301 (720)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A 301 (720)
.+...|+.++|...++.+++.. +.+.. +..+..++...|+.++|...++++... +...+..+...+...|..++|
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHH
Confidence 6677778888888777777762 23444 666777777777777777777766542 233344445555555555555
Q ss_pred HHHHhhCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----hccCcH---HHHHHHHHH
Q 005000 302 RQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTAC-----ANLGAL---ELGEWVKTY 373 (720)
Q Consensus 302 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~-----~~~~~~---~~a~~i~~~ 373 (720)
.+.++.... ++.....+ .. ......+... ...+.+ +.|.+.++.
T Consensus 170 l~~l~~~~~-~p~~~~~l--------~~-------------------~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ 221 (765)
T PRK10049 170 LGAIDDANL-TPAEKRDL--------EA-------------------DAAAELVRLSFMPTRSEKERYAIADRALAQYDA 221 (765)
T ss_pred HHHHHhCCC-CHHHHHHH--------HH-------------------HHHHHHHHhhcccccChhHHHHHHHHHHHHHHH
Confidence 555554443 21100000 00 0000011110 111122 445555555
Q ss_pred HHHc-CCCCChh-H-hhH---HhhhhhhcCCHHHHHHHHHhccCCC---H-HHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 005000 374 IDKN-KVKNDIF-V-GNA---LIDMYCKCGDVEKAQRVFREMLRKD---K-FTWTAMIVGLAINGHGDKSLDMFSQMLRA 443 (720)
Q Consensus 374 ~~~~-~~~~~~~-~-~~~---li~~y~~~g~~~~A~~~~~~~~~~~---~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 443 (720)
+.+. ...|+.. . ..+ .+..+...|++++|+..|+.+.+.+ + ..-..+...|...|++++|+..|+++...
T Consensus 222 ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~ 301 (765)
T PRK10049 222 LEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH 301 (765)
T ss_pred HHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 5532 1122211 1 011 1223345678888888888876432 1 11122456788888888888888887764
Q ss_pred CCCC---ChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcC----------CCcc---HHHHHHHHHHHHhcCCHHHHHHH
Q 005000 444 SIIP---DEVTYVGVLSACTHTGMVDEGREYFADMTIQHG----------IEPN---EAHYGCMVDLLGRAGHLNEALEV 507 (720)
Q Consensus 444 g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~p~---~~~~~~li~~~~~~g~~~eA~~~ 507 (720)
.... .......+..++...|++++|.++++.+..... -.|+ ...+..+..++...|++++|++.
T Consensus 302 ~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~ 381 (765)
T PRK10049 302 PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMR 381 (765)
T ss_pred CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3111 123455566677888888888888888763211 1122 23456677888999999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 508 IKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 508 ~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
++++ ...| +...+..+...+...|++++|+..++++++++|++...+..++..+.+.|+|++|.++++.+.+.
T Consensus 382 l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 382 ARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9987 3445 67788888999999999999999999999999999999999999999999999999999988764
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.5e-16 Score=176.88 Aligned_cols=416 Identities=10% Similarity=0.003 Sum_probs=291.4
Q ss_pred CCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcC---CCCCeeeHHHHHH
Q 005000 113 PDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVS---YKDDVVTWNAMFS 189 (720)
Q Consensus 113 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~---~~~~~~~~~~li~ 189 (720)
.++.-..-.+......|+.++|.+++....... +.+...+..+...+.+.|++++|.++|+.. ...+...+..+..
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~ 91 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLIL 91 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 355556667777888999999999999988733 445557899999999999999999999984 3345667888889
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHH
Q 005000 190 GYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGF 269 (720)
Q Consensus 190 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 269 (720)
.+...|++++|+..+++.... .|+...+..+..++...|+.+.|...++.+++.... +..++..+..++.+.|..+.
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHH
Confidence 999999999999999999876 343333777888888999999999999999997543 56666778889999999999
Q ss_pred HHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccchHHHHHHHHhcCCh---hHHHHHHHHHHHC-CCC
Q 005000 270 ALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRF---REALTLFREMQTS-NIR 345 (720)
Q Consensus 270 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~-g~~ 345 (720)
|.+.++.... ++..... +. ...+....+. .+.......+++ ++|+..++.+.+. ...
T Consensus 169 Al~~l~~~~~-~p~~~~~-l~-------~~~~~~~~r~----------~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~ 229 (765)
T PRK10049 169 ALGAIDDANL-TPAEKRD-LE-------ADAAAELVRL----------SFMPTRSEKERYAIADRALAQYDALEALWHDN 229 (765)
T ss_pred HHHHHHhCCC-CHHHHHH-HH-------HHHHHHHHHh----------hcccccChhHHHHHHHHHHHHHHHHHhhcccC
Confidence 9999998776 2211000 00 0000000000 000011112223 5666666666643 122
Q ss_pred CCHH-HHH----HHHHHHhccCcHHHHHHHHHHHHHcCCC-CChhHhhHHhhhhhhcCCHHHHHHHHHhccCCC------
Q 005000 346 PDEF-TIV----SILTACANLGALELGEWVKTYIDKNKVK-NDIFVGNALIDMYCKCGDVEKAQRVFREMLRKD------ 413 (720)
Q Consensus 346 p~~~-t~~----~ll~~~~~~~~~~~a~~i~~~~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~------ 413 (720)
|+.. .+. ..+.++...++.+.|...++.+.+.+.+ |+ .....+...|...|++++|+..|+++...+
T Consensus 230 p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~ 308 (765)
T PRK10049 230 PDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADL 308 (765)
T ss_pred CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCC
Confidence 2221 111 1123334556777777777776665422 22 122224667777888888888888764332
Q ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-----------CCCCh---HHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 005000 414 -KFTWTAMIVGLAINGHGDKSLDMFSQMLRAS-----------IIPDE---VTYVGVLSACTHTGMVDEGREYFADMTIQ 478 (720)
Q Consensus 414 -~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----------~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 478 (720)
...+..+..++...|++++|+++++++.... -.|+. ..+..+...+...|++++|++.++++...
T Consensus 309 ~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~ 388 (765)
T PRK10049 309 SDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN 388 (765)
T ss_pred ChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2345556667788888888888888887642 12342 24455667888999999999999998733
Q ss_pred cCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchH
Q 005000 479 HGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN-SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVY 554 (720)
Q Consensus 479 ~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 554 (720)
.+.+...+..+..++...|++++|++.+++. ...|+ ...+..+...+...|++++|+.+++++++..|+++.+.
T Consensus 389 --~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 389 --APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 3446788889999999999999999999997 56675 66777788889999999999999999999999987543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-15 Score=169.61 Aligned_cols=353 Identities=9% Similarity=-0.017 Sum_probs=221.7
Q ss_pred hcCChHHHHHHHhcCCC------CCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHH
Q 005000 162 LCGEVDMARGIFDVSYK------DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVG 235 (720)
Q Consensus 162 ~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 235 (720)
+..+++.-.-.|...++ .+..-.-.++..+.+.|++++|+.+++........+ ...+..+..+....|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHH
Confidence 44555555555554433 123334455667778888888888888877764333 23344444555567888888
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccc
Q 005000 236 KRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVL 315 (720)
Q Consensus 236 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~ 315 (720)
.+.++.+++... .+...+..+...+.+.|++++|...|++....+ ..+...
T Consensus 96 ~~~l~~~l~~~P-~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~----------------------------P~~~~a 146 (656)
T PRK15174 96 LQVVNKLLAVNV-CQPEDVLLVASVLLKSKQYATVADLAEQAWLAF----------------------------SGNSQI 146 (656)
T ss_pred HHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------------CCcHHH
Confidence 888888777632 245566666777777777777777776654311 112334
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhh
Q 005000 316 WTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCK 395 (720)
Q Consensus 316 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~ 395 (720)
|..+...+...|++++|...++.+......+ ...+.. +..+...|+++.|...+..+.+....++......+...+.+
T Consensus 147 ~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~ 224 (656)
T PRK15174 147 FALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCA 224 (656)
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH
Confidence 5555555566666666666665554432111 111111 22345556666666665555544322233333444566667
Q ss_pred cCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHH----HHHHHHHHHHCCCCCCh-HHHHHHHHHHHhcCChhh
Q 005000 396 CGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDK----SLDMFSQMLRASIIPDE-VTYVGVLSACTHTGMVDE 467 (720)
Q Consensus 396 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~ 467 (720)
.|++++|...|+.... .+...+..+...+...|++++ |+..|++..+. .|+. ..+..+...+...|++++
T Consensus 225 ~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~e 302 (656)
T PRK15174 225 VGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEK 302 (656)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHH
Confidence 7777777777776643 245667777777777787775 78888888774 4443 577777788888888888
Q ss_pred HHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHH
Q 005000 468 GREYFADMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPNSIVW-GALLGACRVHRDAEMAEMAAKQIL 544 (720)
Q Consensus 468 a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~ 544 (720)
|...+++... ..| +...+..+...|.+.|++++|.+.++++ ...|+...+ ..+..++...|+.++|...+++++
T Consensus 303 A~~~l~~al~---l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al 379 (656)
T PRK15174 303 AIPLLQQSLA---THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYI 379 (656)
T ss_pred HHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8888888763 234 3556667788888888888888888877 355654443 334567788888888888888888
Q ss_pred hcCCCCc
Q 005000 545 ELDPDNE 551 (720)
Q Consensus 545 ~~~p~~~ 551 (720)
+..|++.
T Consensus 380 ~~~P~~~ 386 (656)
T PRK15174 380 QARASHL 386 (656)
T ss_pred HhChhhc
Confidence 8888753
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.8e-15 Score=156.18 Aligned_cols=509 Identities=14% Similarity=0.119 Sum_probs=354.0
Q ss_pred ccCChHHHHHHhccCC------CCCcchHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCc-ccHHHHHHH---HhccCC
Q 005000 61 EKGDMKYACKVFRKIP------RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDN-YTFPFLLKG---FTRDIA 130 (720)
Q Consensus 61 ~~g~~~~A~~~f~~~~------~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~---~~~~~~ 130 (720)
..|++..|..+|.... .||+.. .+--++.+.|+.+.|+..|.+.++.+ |+. .++..|--. .-....
T Consensus 176 nkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLd--p~~v~alv~L~~~~l~~~d~~s 251 (1018)
T KOG2002|consen 176 NKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQLD--PTCVSALVALGEVDLNFNDSDS 251 (1018)
T ss_pred ccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhcC--hhhHHHHHHHHHHHHHccchHH
Confidence 4578889999887632 134321 22245567888899999999888754 422 222111111 112334
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCC------eeeHHHHHHHHHhCCChhHHHHHH
Q 005000 131 VEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD------VVTWNAMFSGYKRVKQFDETRKLF 204 (720)
Q Consensus 131 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~l~ 204 (720)
+..|.+++...-+.. ..++.+.+.|.+.|.-.|++..+..+.+.+...+ ..+|-.+.++|-..|++++|...|
T Consensus 252 ~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY 330 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYY 330 (1018)
T ss_pred HHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 566666666665543 4678888999999999999999988887655432 235778889999999999999999
Q ss_pred HHHHHCCCCCCHhh--HHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC----CHHHHHHHHhhcC
Q 005000 205 GEMERKGVLPTSVT--IVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACG----EMGFALEIFGNIK 278 (720)
Q Consensus 205 ~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g----~~~~A~~~~~~~~ 278 (720)
.+.... .||.++ +.-+...+.+.|+++.+...|+.+.+.. +.+..+...|...|...+ ..+.|..++.+..
T Consensus 331 ~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~ 407 (1018)
T KOG2002|consen 331 MESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVL 407 (1018)
T ss_pred HHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHH
Confidence 776654 455544 3456677888999999999999988873 446667777777787765 5677777777776
Q ss_pred CC---CchhHHHHHHHHHhcCC------HHHHHHHHhhC-CCCCccchHHHHHHHHhcCChhHHHHHHHHHHHC---CCC
Q 005000 279 NK---DVISWTAIVTGYINRGQ------VDMARQYFDQM-PERDYVLWTAMIDGYLRVNRFREALTLFREMQTS---NIR 345 (720)
Q Consensus 279 ~~---~~~~~~~li~~~~~~g~------~~~A~~~f~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~ 345 (720)
.+ |...|-.+...|-+..- +..|..++..- ....+...|.+...+...|++++|...|...... ...
T Consensus 408 ~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n 487 (1018)
T KOG2002|consen 408 EQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVAN 487 (1018)
T ss_pred hcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcC
Confidence 64 45566666555544333 34444444332 2346677899999999999999999999988754 123
Q ss_pred CCH-----HHHH-HHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhcc---CCCHHH
Q 005000 346 PDE-----FTIV-SILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML---RKDKFT 416 (720)
Q Consensus 346 p~~-----~t~~-~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~ 416 (720)
+|. .|.. .+....-..++.+.|.+++..+++.. +.-+..|-.|..+....+...+|...++... ..++..
T Consensus 488 ~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~a 566 (1018)
T KOG2002|consen 488 KDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNA 566 (1018)
T ss_pred ccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHH
Confidence 333 2222 23334456678899999999988763 2223333333333333467778888888774 447788
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCChHHHHHHHHHHHh------------cCChhhHHHHHHHHHHHcCCCc
Q 005000 417 WTAMIVGLAINGHGDKSLDMFSQMLRA-SIIPDEVTYVGVLSACTH------------TGMVDEGREYFADMTIQHGIEP 483 (720)
Q Consensus 417 ~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~------------~g~~~~a~~~~~~m~~~~~~~p 483 (720)
|+.+...|.....+..|.+-|...... -..+|..+..+|.+.|.. .+..++|+++|.++.+ .-+-
T Consensus 567 rsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpk 644 (1018)
T KOG2002|consen 567 RSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPK 644 (1018)
T ss_pred HHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcc
Confidence 888888888888888888877665542 234677777777776643 2456778888887762 2234
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCcchHHHHHh
Q 005000 484 NEAHYGCMVDLLGRAGHLNEALEVIKNMP--MKPNSIVWGALLGACRVHRDAEMAEMAAKQILELD--PDNEAVYVLLCN 559 (720)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~ 559 (720)
|...-|-+.-.++..|++.+|.++|.+.. ......+|-.+...|...|++-.|+++|+..++.. -+++.....|+.
T Consensus 645 N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lar 724 (1018)
T KOG2002|consen 645 NMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLAR 724 (1018)
T ss_pred hhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence 66777778888999999999999998872 22356789999999999999999999999988753 457788889999
Q ss_pred HhhhcCChhHHHHHHHHHHhC
Q 005000 560 IYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 560 ~~~~~g~~~~a~~~~~~m~~~ 580 (720)
++.+.|+|.+|.+........
T Consensus 725 a~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 725 AWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHhhhHHHHHHHHHHHHHh
Confidence 999999999999987766543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-15 Score=170.51 Aligned_cols=285 Identities=9% Similarity=-0.014 Sum_probs=224.6
Q ss_pred HHHHhcCCHHHHHHHHhhCCC---CCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH
Q 005000 290 TGYINRGQVDMARQYFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALEL 366 (720)
Q Consensus 290 ~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 366 (720)
.+....|++++|...|+++.. .+...|..+...+.+.|++++|+..|+++.... +.+...+..+...+...|+++.
T Consensus 84 ~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~e 162 (656)
T PRK15174 84 ISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQ 162 (656)
T ss_pred hhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHH
Confidence 333344444444444444432 245568888889999999999999999998752 3345677778888999999999
Q ss_pred HHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005000 367 GEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK----DKFTWTAMIVGLAINGHGDKSLDMFSQMLR 442 (720)
Q Consensus 367 a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 442 (720)
|...+..+...... +...+..+ ..+.+.|++++|...++.+.+. +...+..+...+...|++++|+..|+++.+
T Consensus 163 A~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~ 240 (656)
T PRK15174 163 AISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALA 240 (656)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999888765432 33334333 3478899999999999987543 334445566788999999999999999998
Q ss_pred CCCCCChHHHHHHHHHHHhcCChhh----HHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-
Q 005000 443 ASIIPDEVTYVGVLSACTHTGMVDE----GREYFADMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP- 515 (720)
Q Consensus 443 ~g~~p~~~t~~~ll~a~~~~g~~~~----a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p- 515 (720)
.. +.+...+..+..++...|++++ |...|+++.. +.| +...+..+..+|.+.|++++|...+++. ...|
T Consensus 241 ~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~ 316 (656)
T PRK15174 241 RG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD 316 (656)
T ss_pred cC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 63 2244677778889999999986 8999998863 344 5678899999999999999999999987 4556
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 516 NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 516 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
+...+..+..++...|++++|...++++++.+|+++..+..++.++...|++++|.+.++...+..
T Consensus 317 ~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 317 LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 466788888999999999999999999999999988777778999999999999999999987654
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-14 Score=161.44 Aligned_cols=432 Identities=12% Similarity=0.034 Sum_probs=241.1
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHH---HHHHHhCCChhHHH
Q 005000 125 FTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAM---FSGYKRVKQFDETR 201 (720)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~A~ 201 (720)
..+.|+++.|...+.++++........++ .++..+...|+.++|+..+++...|+...+..+ ...|...|++++|+
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 45788888999999888885533222344 788888888999999998888776644444333 34677778999999
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCC--
Q 005000 202 KLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKN-- 279 (720)
Q Consensus 202 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-- 279 (720)
++|+++.+... -|...+..+...+...++.++|.+.+..+.+. .|+...+..++..+...++..+|++.++++.+
T Consensus 123 ely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 123 ALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 99998887632 23455556667777888888888888887776 44444554455555455666568888887765
Q ss_pred C-CchhHHHHHHHHHhcCCHHHHHHHHhhCCCC-CccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005000 280 K-DVISWTAIVTGYINRGQVDMARQYFDQMPER-DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTA 357 (720)
Q Consensus 280 ~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 357 (720)
| +...+..+...+.+.|-...|.++...-+.- +...+.-+ . .+.|.+. ++.+..|+..-
T Consensus 200 P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l-~-------~~~~a~~----vr~a~~~~~~~------- 260 (822)
T PRK14574 200 PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL-E-------RDAAAEQ----VRMAVLPTRSE------- 260 (822)
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH-H-------HHHHHHH----Hhhcccccccc-------
Confidence 2 4455666677777777777777766654421 11111100 0 0011111 00000000000
Q ss_pred HhccCcHHHHHHHHHHHHHc-CC-CCChhH-hhH---HhhhhhhcCCHHHHHHHHHhccCC----CHHHHHHHHHHHHHc
Q 005000 358 CANLGALELGEWVKTYIDKN-KV-KNDIFV-GNA---LIDMYCKCGDVEKAQRVFREMLRK----DKFTWTAMIVGLAIN 427 (720)
Q Consensus 358 ~~~~~~~~~a~~i~~~~~~~-~~-~~~~~~-~~~---li~~y~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~ 427 (720)
-.+..-.+.+..-++.+... +- ++.... ..+ .+-++.+.|+..++++.|+.+... ...+-.++..+|...
T Consensus 261 ~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~ 340 (822)
T PRK14574 261 TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDR 340 (822)
T ss_pred hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhc
Confidence 00000112222222222221 11 111111 111 223344556666666666666422 223444555666666
Q ss_pred CChHHHHHHHHHHHHCCC-----CCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcC----------CCcc---HHHHH
Q 005000 428 GHGDKSLDMFSQMLRASI-----IPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHG----------IEPN---EAHYG 489 (720)
Q Consensus 428 g~~~~A~~l~~~m~~~g~-----~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~p~---~~~~~ 489 (720)
+++++|+.+|+++..... .++......|.-++...+++++|..+++.+.+... -.|+ ...+.
T Consensus 341 ~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~ 420 (822)
T PRK14574 341 RLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQT 420 (822)
T ss_pred CCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHH
Confidence 666666666666544321 11222234556666666666666666666642111 0111 12333
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCCh
Q 005000 490 CMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRW 567 (720)
Q Consensus 490 ~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 567 (720)
.++..+...|++.+|++.++++ ...| |...+..+...++..|.+.+|+..++.+..++|++..+...++..+...|+|
T Consensus 421 l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~ 500 (822)
T PRK14574 421 LLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEW 500 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhH
Confidence 4555566667777777776666 2334 5666666666667777777777777666666676666666666666666777
Q ss_pred hHHHHHHHHHHh
Q 005000 568 DNFRELRQMILD 579 (720)
Q Consensus 568 ~~a~~~~~~m~~ 579 (720)
++|.++.+.+.+
T Consensus 501 ~~A~~~~~~l~~ 512 (822)
T PRK14574 501 HQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHHHHh
Confidence 777666665544
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.2e-14 Score=159.17 Aligned_cols=444 Identities=11% Similarity=0.006 Sum_probs=305.1
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCcc-cHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 005000 83 WNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNY-TFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYC 161 (720)
Q Consensus 83 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 161 (720)
|...|. ..++|++..|++.|++.++.. |+.. ....++..+...|+.++|...++..+. .-+.......++...|.
T Consensus 38 y~~aii-~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~ 113 (822)
T PRK14574 38 YDSLII-RARAGDTAPVLDYLQEESKAG--PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYR 113 (822)
T ss_pred HHHHHH-HHhCCCHHHHHHHHHHHHhhC--ccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHH
Confidence 443333 478999999999999998854 5542 223888888889999999999999882 11122233333456888
Q ss_pred hcCChHHHHHHHhcCCCC---CeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHH
Q 005000 162 LCGEVDMARGIFDVSYKD---DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA 238 (720)
Q Consensus 162 ~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 238 (720)
..|++++|.++|+++.+. |...+..++..|...++.++|++.++++... .|+...+..++..+...++...|.+.
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHH
Confidence 899999999999987653 4566778888999999999999999999875 56666665454444456666669999
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-CchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccchH
Q 005000 239 HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK-DVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWT 317 (720)
Q Consensus 239 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~ 317 (720)
++.+++.. +.+...+..++....+.|-...|.++..+-++- +...+.-+ ..+.|.+..+....+.. +
T Consensus 192 ~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l--------~~~~~a~~vr~a~~~~~-~-- 259 (822)
T PRK14574 192 SSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL--------ERDAAAEQVRMAVLPTR-S-- 259 (822)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH--------HHHHHHHHHhhcccccc-c--
Confidence 99999984 447788888999999999999999988876531 11111100 01111111111100000 0
Q ss_pred HHHHHHHhcCC---hhHHHHHHHHHHHC-CCCCCH-H----HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhH
Q 005000 318 AMIDGYLRVNR---FREALTLFREMQTS-NIRPDE-F----TIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNA 388 (720)
Q Consensus 318 ~li~~~~~~g~---~~~A~~~~~~m~~~-g~~p~~-~----t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ 388 (720)
..++ .+.|+.-++.+... +-.|.. . ...--+-++...++...+...++.+...+.+....+-.+
T Consensus 260 -------~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a 332 (822)
T PRK14574 260 -------ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRW 332 (822)
T ss_pred -------chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHH
Confidence 0111 23444444444431 111221 1 112234455666677777777777776665545556677
Q ss_pred HhhhhhhcCCHHHHHHHHHhccCC---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-------------CC
Q 005000 389 LIDMYCKCGDVEKAQRVFREMLRK---------DKFTWTAMIVGLAINGHGDKSLDMFSQMLRAS-------------II 446 (720)
Q Consensus 389 li~~y~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-------------~~ 446 (720)
+.++|...+++++|..+|..+... +......|.-+|...+++++|..+++++.+.- ..
T Consensus 333 ~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn 412 (822)
T PRK14574 333 AASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPN 412 (822)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCC
Confidence 777777777777777777776331 22334567777888888888888888887631 12
Q ss_pred CChH-HHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 005000 447 PDEV-TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGAL 523 (720)
Q Consensus 447 p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l 523 (720)
||-. .+..++..+...|++.+|++.++.+.. .-+-|......+.+++...|++.+|++.++.. ...| +..+....
T Consensus 413 ~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~ 490 (822)
T PRK14574 413 DDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQ 490 (822)
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHH
Confidence 2333 344456678899999999999999963 33558889999999999999999999999876 4667 45667788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 005000 524 LGACRVHRDAEMAEMAAKQILELDPDNEAV 553 (720)
Q Consensus 524 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 553 (720)
+.+....+++.+|..+.+++++..|+++..
T Consensus 491 ~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 491 AETAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 888899999999999999999999998744
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.6e-14 Score=150.17 Aligned_cols=506 Identities=11% Similarity=0.073 Sum_probs=296.7
Q ss_pred hHHHHHHhccCCC--CCcchHHHHHHHH--HcCCCchHHHHHHHHhHhCC--CCCCcccHHHHHHHHhccCChHHHHHHH
Q 005000 65 MKYACKVFRKIPR--PSVCLWNTMIKGY--SRIDSHKNGVLIYLDMLKSD--VRPDNYTFPFLLKGFTRDIAVEFGKELH 138 (720)
Q Consensus 65 ~~~A~~~f~~~~~--~~~~~~n~li~~~--~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 138 (720)
+++|.+.|....+ |+-+ --.|..+. ...|++..|+.+|...+... .+||... .+-.++.+.++.+.|+..|
T Consensus 146 ~~~A~a~F~~Vl~~sp~Ni-l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNI-LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhCCcch-HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHH
Confidence 4667776665432 2221 12222332 33567778888887765532 2344432 2234456777777777777
Q ss_pred HHHHHhCCCCChhHHHHHHHHH---Hh---cCChHHHHHHHhcC---CCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHH
Q 005000 139 CHVLKFGFDSSVFVQNALISTY---CL---CGEVDMARGIFDVS---YKDDVVTWNAMFSGYKRVKQFDETRKLFGEMER 209 (720)
Q Consensus 139 ~~~~~~g~~~~~~~~~~li~~y---~~---~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 209 (720)
..+.+.. | ...++++..+ .. ...+..+..++... ...|++.-+.|..-|.-.|+++.++.+...+..
T Consensus 223 ~ralqLd--p--~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~ 298 (1018)
T KOG2002|consen 223 ERALQLD--P--TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIK 298 (1018)
T ss_pred HHHHhcC--h--hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 7777643 3 2222222211 11 12344455555432 234677777777778888888888888777765
Q ss_pred CCCC--CCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCC---Cchh
Q 005000 210 KGVL--PTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK---DVIS 284 (720)
Q Consensus 210 ~g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~ 284 (720)
.-.. .-...|-.+.+++-..|+++.|...+-...+......+..+--|..+|.+.|+++.+...|+.+... +..+
T Consensus 299 ~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~et 378 (1018)
T KOG2002|consen 299 NTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYET 378 (1018)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHH
Confidence 4211 1123466677777778888888888777766533222333445677888888888888888777652 3445
Q ss_pred HHHHHHHHHhcC----CHHHHHHHHhhCCCC---CccchHHHHHHHHhcCChhHHHHHHHHH----HHCCCCCCHHHHHH
Q 005000 285 WTAIVTGYINRG----QVDMARQYFDQMPER---DYVLWTAMIDGYLRVNRFREALTLFREM----QTSNIRPDEFTIVS 353 (720)
Q Consensus 285 ~~~li~~~~~~g----~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~t~~~ 353 (720)
...+...|+..+ ..+.|..+..+..++ |...|-.+...+-+..-+.. +..|... ...+-.+.....+.
T Consensus 379 m~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNN 457 (1018)
T KOG2002|consen 379 MKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNN 457 (1018)
T ss_pred HHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHh
Confidence 555555666554 456666666665544 44556666555555443333 5555443 33444566667777
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHc---CCCCCh------hHhhHHhhhhhhcCCHHHHHHHHHhccCCCHH---HHHHHH
Q 005000 354 ILTACANLGALELGEWVKTYIDKN---KVKNDI------FVGNALIDMYCKCGDVEKAQRVFREMLRKDKF---TWTAMI 421 (720)
Q Consensus 354 ll~~~~~~~~~~~a~~i~~~~~~~---~~~~~~------~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~---~~~~li 421 (720)
+.......|+++.|...+..+... ...++. .+--.|...+-..++.+.|.+.|..+.+..+. .|-.+.
T Consensus 458 vaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~ 537 (1018)
T KOG2002|consen 458 VASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLG 537 (1018)
T ss_pred HHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhh
Confidence 777777777777777777666544 112222 12233555666667777777877777544322 333333
Q ss_pred HHHHHcCChHHHHHHHHHHHHC-CCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHH----
Q 005000 422 VGLAINGHGDKSLDMFSQMLRA-SIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLG---- 496 (720)
Q Consensus 422 ~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~---- 496 (720)
......++..+|...+...... .-.|+..+| +...+.....+..|.+-|..+..+....+|+...-.|.+.|.
T Consensus 538 ~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl--~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~ 615 (1018)
T KOG2002|consen 538 CMARDKNNLYEASLLLKDALNIDSSNPNARSL--LGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALH 615 (1018)
T ss_pred HHHHhccCcHHHHHHHHHHHhcccCCcHHHHH--HHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhc
Confidence 2222346667777777776653 234444443 333455556666666655555433333456555555555443
Q ss_pred --------hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCC
Q 005000 497 --------RAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNR 566 (720)
Q Consensus 497 --------~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 566 (720)
..+..++|+++|.+. ...| |...-|.+.-.+...|++..|..+|.++.+--.+.+.+|..++.+|..+|+
T Consensus 616 ~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~q 695 (1018)
T KOG2002|consen 616 NPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQ 695 (1018)
T ss_pred ccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHH
Confidence 233566777777765 4444 555666666677777888888888888777666667778888888888888
Q ss_pred hhHHHHHHHHHHhC
Q 005000 567 WDNFRELRQMILDR 580 (720)
Q Consensus 567 ~~~a~~~~~~m~~~ 580 (720)
|-.|.++++...++
T Consensus 696 y~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 696 YRLAIQMYENCLKK 709 (1018)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888887776554
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.1e-13 Score=132.16 Aligned_cols=443 Identities=12% Similarity=0.088 Sum_probs=297.7
Q ss_pred cHHHHHH---HHhccCChHHHHHHHHHHHHhCCCCChhHHH-HHHHHHHhcCChHHHHHHHhc----CCCCCe----eeH
Q 005000 117 TFPFLLK---GFTRDIAVEFGKELHCHVLKFGFDSSVFVQN-ALISTYCLCGEVDMARGIFDV----SYKDDV----VTW 184 (720)
Q Consensus 117 t~~~ll~---~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~y~~~g~~~~A~~~f~~----~~~~~~----~~~ 184 (720)
||+.+.. -|.......+|+..++.+++..+-|+.-... .+.+.|.+...+..|.+.++. .+.-+- ...
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 5555444 3444556677888888888877766654332 344667777888888888753 333222 234
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCC------------CChH
Q 005000 185 NAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIV------------PNLI 252 (720)
Q Consensus 185 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~------------~~~~ 252 (720)
|.+--.+.+.|+++.|+..|+...+. .||-.+-..++-.+...|+.+..++.|..++..... |+..
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 44444678889999999999887765 577776555555666678888888888888764322 2323
Q ss_pred HHHHHHH-----HHHhcC--CHHHHHHHHhhcC----CCCch---hHH------------------HHHHHHHhcCCHHH
Q 005000 253 LENALTD-----MYAACG--EMGFALEIFGNIK----NKDVI---SWT------------------AIVTGYINRGQVDM 300 (720)
Q Consensus 253 ~~~~li~-----~y~~~g--~~~~A~~~~~~~~----~~~~~---~~~------------------~li~~~~~~g~~~~ 300 (720)
..|.-+. -.-+.. +.+++.-.--++. .++-. -|- .-...|.++|+++.
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEG 437 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence 3332221 111111 1222222112222 22210 010 01122678889999
Q ss_pred HHHHHhhCCCCCccchH----HHHHH-HHhc-CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 005000 301 ARQYFDQMPERDYVLWT----AMIDG-YLRV-NRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYI 374 (720)
Q Consensus 301 A~~~f~~~~~~~~~~~~----~li~~-~~~~-g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~ 374 (720)
|.++++-..++|..+-. .|-.. |.+- .++.+|..+-+..+... +-|....+.--+.....|+++.|...+..+
T Consensus 438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 88888877766544332 22222 2222 34666666655554332 233333333233344578999999999998
Q ss_pred HHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhc---cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHH
Q 005000 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM---LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451 (720)
Q Consensus 375 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 451 (720)
+...-......|| +.-.+-+.|++++|+..|-++ ...++...-.+.+.|....++.+|++++.+.... ++.|...
T Consensus 517 l~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~i 594 (840)
T KOG2003|consen 517 LNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAI 594 (840)
T ss_pred HcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHH
Confidence 8766444333443 455677899999999999876 4567777788888999999999999999877654 4445567
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-Hh
Q 005000 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPNSIVWGALLGAC-RV 529 (720)
Q Consensus 452 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~ll~~~-~~ 529 (720)
+..|...|-+.|+-.+|.+.+-.-- .-++.+.++..-|..-|....-+++|+.+|++. -++|+..-|.-++..| ++
T Consensus 595 lskl~dlydqegdksqafq~~ydsy--ryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 595 LSKLADLYDQEGDKSQAFQCHYDSY--RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHHhhcccchhhhhhhhhhcc--cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHh
Confidence 7888889999999999999876532 234557888888888999999999999999998 5889999999988765 67
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCC
Q 005000 530 HRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNR 566 (720)
Q Consensus 530 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 566 (720)
.|++.+|..+++......|+|......|..++...|.
T Consensus 673 sgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 8999999999999999999999999999999888775
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.3e-13 Score=129.91 Aligned_cols=427 Identities=17% Similarity=0.187 Sum_probs=271.4
Q ss_pred cchHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHh--ccCChHHH-HHHHHHHHHhCCCCChhHHHHH
Q 005000 80 VCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFT--RDIAVEFG-KELHCHVLKFGFDSSVFVQNAL 156 (720)
Q Consensus 80 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~l 156 (720)
+.+=|.|+.. ..+|...++.-+|+.|.+.|+..+...-..+++..+ ...++..+ .+.|-.|.+.|-. ...+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc---
Confidence 4566777665 557889999999999999998776665555555432 23333222 2233344444422 22232
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHH
Q 005000 157 ISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGK 236 (720)
Q Consensus 157 i~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 236 (720)
|.|.+.+ ++-+...+...+|.+||.|+++--..+.|.+++++-.+...+.+..+|+.+|.+-+-. .++
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K 258 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGK 258 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccH
Confidence 4465544 4444455677899999999999999999999999999998999999999999876533 348
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhC-CCCCccc
Q 005000 237 RAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM-PERDYVL 315 (720)
Q Consensus 237 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~-~~~~~~~ 315 (720)
++..+|+...+.||..++|+++++..+.|+++.|.+.+-++. .-++++ .+|...+
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil------------------------~EmKeiGVePsLsS 314 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQIL------------------------GEMKEIGVEPSLSS 314 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHH------------------------HHHHHhCCCcchhh
Confidence 899999999999999999999999999999988765543211 111111 2455667
Q ss_pred hHHHHHHHHhcCChhH-HHHHHHHHHH----CCCCC----CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC----CCCC
Q 005000 316 WTAMIDGYLRVNRFRE-ALTLFREMQT----SNIRP----DEFTIVSILTACANLGALELGEWVKTYIDKNK----VKND 382 (720)
Q Consensus 316 ~~~li~~~~~~g~~~~-A~~~~~~m~~----~g~~p----~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~----~~~~ 382 (720)
|..+|..+.+.++..+ |..+..+.+. ..++| |...|.+.+..|.+..+.+.|.+++....... +.|+
T Consensus 315 yh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~ 394 (625)
T KOG4422|consen 315 YHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPD 394 (625)
T ss_pred HHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChH
Confidence 7777777777666533 4455555443 22332 55678888899999999999999888765421 1222
Q ss_pred ---hhHhhHHhhhhhhcCCHHHHHHHHHhccC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHH
Q 005000 383 ---IFVGNALIDMYCKCGDVEKAQRVFREMLR----KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGV 455 (720)
Q Consensus 383 ---~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 455 (720)
..-|..+....+....++.-...|+.|.. |+..+-..++.+....|.++-.-+++..|+..|-.-+.....-+
T Consensus 395 ~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eei 474 (625)
T KOG4422|consen 395 QHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEI 474 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHH
Confidence 23455667777777788888888887753 35555566667777778888788888877776643333333333
Q ss_pred HHHHHhcC-Ch--------hh-----HHHHHHHH----HHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC------
Q 005000 456 LSACTHTG-MV--------DE-----GREYFADM----TIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM------ 511 (720)
Q Consensus 456 l~a~~~~g-~~--------~~-----a~~~~~~m----~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~------ 511 (720)
+..+++.. .. .. |..+++.. .+...........++..-++.|.|+.++|.+++.-.
T Consensus 475 l~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ 554 (625)
T KOG4422|consen 475 LMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNK 554 (625)
T ss_pred HHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCc
Confidence 33333322 11 00 00111100 001122334556677777777788877777776554
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005000 512 -PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELD 547 (720)
Q Consensus 512 -~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 547 (720)
+..|..-..--+..+....++..+|..+++-+...+
T Consensus 555 ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 555 IPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred CCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 222333333344455566666667776666665443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.9e-12 Score=124.84 Aligned_cols=426 Identities=13% Similarity=0.127 Sum_probs=241.4
Q ss_pred cccchhHHhcccChHHHHHHHHHHHHhCCCCChhHhhHHhc---ccccccCChHHHHHHhccCC----------------
Q 005000 16 ETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVT---FCCSEKGDMKYACKVFRKIP---------------- 76 (720)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~---~~y~~~g~~~~A~~~f~~~~---------------- 76 (720)
.++++.+++. +-++.+.-++.+|.+.|.+.+.-+--.|+. . |-...-+-.-++.|-.|.
T Consensus 119 E~nL~kmIS~-~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~-~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vA 196 (625)
T KOG4422|consen 119 ENNLLKMISS-REVKDSCILYERMRSENVDVSEKVQLELFRLVTY-YNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVA 196 (625)
T ss_pred hhHHHHHHhh-cccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHh-hcCCCCcchhHHHHhhccccccccccccccccHH
Confidence 3444444432 234555667777777777666554433332 2 222221111122332222
Q ss_pred -------CCCcchHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC
Q 005000 77 -------RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSS 149 (720)
Q Consensus 77 -------~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 149 (720)
..+..++..||.++++.-..+.|.++|++-.....+.+..+||.+|.+-. +..++.+..+|+...+.||
T Consensus 197 dL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pn 272 (625)
T KOG4422|consen 197 DLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPN 272 (625)
T ss_pred HHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCc
Confidence 23444667777777777777777777777666666667777777766543 2333666677777777777
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcC
Q 005000 150 VFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKL 229 (720)
Q Consensus 150 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 229 (720)
.+++|++++..++.|+++.|++. |++++.+|++.|+.|...+|..+|..+.+.
T Consensus 273 l~TfNalL~c~akfg~F~~ar~a---------------------------alqil~EmKeiGVePsLsSyh~iik~f~re 325 (625)
T KOG4422|consen 273 LFTFNALLSCAAKFGKFEDARKA---------------------------ALQILGEMKEIGVEPSLSSYHLIIKNFKRE 325 (625)
T ss_pred hHhHHHHHHHHHHhcchHHHHHH---------------------------HHHHHHHHHHhCCCcchhhHHHHHHHhccc
Confidence 77777777777777776666543 567788888889999999998888888877
Q ss_pred CCchH-HHHHHHHHHH----cCCC----CChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHH
Q 005000 230 KDLDV-GKRAHRYVKE----CKIV----PNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDM 300 (720)
Q Consensus 230 ~~~~~-a~~~~~~~~~----~g~~----~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 300 (720)
++... +..+...+.. ..+. .|...+...++.+.+..+.+.|.++-.-....+- ++
T Consensus 326 ~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N---------------~~- 389 (625)
T KOG4422|consen 326 SDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDN---------------WK- 389 (625)
T ss_pred CCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc---------------hh-
Confidence 77643 3444444332 1122 2445556666667677777777766554432111 00
Q ss_pred HHHHHhhCCC--CCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 005000 301 ARQYFDQMPE--RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNK 378 (720)
Q Consensus 301 A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~ 378 (720)
.|.. ...+-|..+....++....+.-+.+|+.|+-.-+-|+..+...++.+....+.++-...++..++..|
T Consensus 390 ------~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 390 ------FIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred ------hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 0000 01133556667777777788888888888877777888888888888888888888888877777766
Q ss_pred CCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHH
Q 005000 379 VKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKF---TWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGV 455 (720)
Q Consensus 379 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 455 (720)
.........-+....++.. ..|+.. -+.....-++ ..-.+.....-.+|......| ...+.+
T Consensus 464 ht~r~~l~eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~a-ad~~e~~e~~~~R~r~~~~~~--t~l~~i 528 (625)
T KOG4422|consen 464 HTFRSDLREEILMLLARDK------------LHPLTPEREQLQVAFAKCA-ADIKEAYESQPIRQRAQDWPA--TSLNCI 528 (625)
T ss_pred hhhhHHHHHHHHHHHhcCC------------CCCCChHHHHHHHHHHHHH-HHHHHHHHhhHHHHHhccCCh--hHHHHH
Confidence 4433333222222222211 011111 0111110000 000111112223344433333 344555
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHH---HHHHHhcCCHHHHHHHHHhC
Q 005000 456 LSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCM---VDLLGRAGHLNEALEVIKNM 511 (720)
Q Consensus 456 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l---i~~~~~~g~~~eA~~~~~~~ 511 (720)
+..+.+.|..++|.++|..+.++.+-.|.....++| ++.-.+......|...++-|
T Consensus 529 a~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 529 AILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 556677788888888877775444445555555543 44455666777777777766
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.6e-11 Score=128.30 Aligned_cols=342 Identities=12% Similarity=0.149 Sum_probs=240.2
Q ss_pred HhcccChHHHHHHHHHHHHhCCCCChhHhhHHhcccccccCChHHHHHHhc---cCCCCCcchHHHHHHHHHcCCCchHH
Q 005000 23 IETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFR---KIPRPSVCLWNTMIKGYSRIDSHKNG 99 (720)
Q Consensus 23 l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~y~~~g~~~~A~~~f~---~~~~~~~~~~n~li~~~~~~g~~~~A 99 (720)
+-+-++...|..+...+++... .+...|..|-.. |-..|+.+++...+- .+.+.|..-|-.+-....+.|++.+|
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~I-yEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEI-YEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHH-HHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHH
Confidence 3334677888888888888753 244556666666 888888888888763 34455667788888888888889999
Q ss_pred HHHHHHhHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHH----HHHHHHhcCChHHHHHHHhc
Q 005000 100 VLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNA----LISTYCLCGEVDMARGIFDV 175 (720)
Q Consensus 100 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----li~~y~~~g~~~~A~~~f~~ 175 (720)
.-.|.+.++.. ++|-..+---...|-+.|+...|...+.++.....+.|..-.-. .+..|...++-+.|.+.++.
T Consensus 227 ~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 227 RYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 88888888754 23433344445567788888889888888888654333333333 34555666777888888876
Q ss_pred CCC-----CCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHh----------------------hHH----HHHH
Q 005000 176 SYK-----DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSV----------------------TIV----LVLS 224 (720)
Q Consensus 176 ~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----------------------t~~----~ll~ 224 (720)
... -+...+|.++..|.+...++.|+.....+......+|.. .|. -+.-
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i 385 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI 385 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence 544 245578899999999999999999998887622222211 111 1222
Q ss_pred HHhcCCCchHHHHHHHHHHHcCC--CCChHHHHHHHHHHHhcCCHHHHHHHHhhcCC----CCchhHHHHHHHHHhcCCH
Q 005000 225 ACAKLKDLDVGKRAHRYVKECKI--VPNLILENALTDMYAACGEMGFALEIFGNIKN----KDVISWTAIVTGYINRGQV 298 (720)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~ 298 (720)
+.......+....+...+.+... .-++..+.-+.++|...|++.+|.++|..+.. .+...|-.+...|...|..
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 33456666667777777777663 44567888899999999999999999999876 3667899999999999999
Q ss_pred HHHHHHHhhCCCCCccc---hHHHHHHHHhcCChhHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHhccCcHHHH
Q 005000 299 DMARQYFDQMPERDYVL---WTAMIDGYLRVNRFREALTLFREMQT--------SNIRPDEFTIVSILTACANLGALELG 367 (720)
Q Consensus 299 ~~A~~~f~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~--------~g~~p~~~t~~~ll~~~~~~~~~~~a 367 (720)
++|.+.|+....-++.. --.|...+.+.|++++|++.+..+.. .+..|+..........+.+.|+.++-
T Consensus 466 e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~f 545 (895)
T KOG2076|consen 466 EEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEF 545 (895)
T ss_pred HHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHH
Confidence 99999999987654444 44566788999999999999998642 22344444444445555566655543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.8e-11 Score=121.33 Aligned_cols=477 Identities=12% Similarity=0.065 Sum_probs=264.0
Q ss_pred HHHHHhHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcC---C
Q 005000 101 LIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVS---Y 177 (720)
Q Consensus 101 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~---~ 177 (720)
++++..++. -|+.+ .+=++.....+.+.|+.++..+++.- +.... |.-+|++...++.|.++++.. .
T Consensus 367 RVlRKALe~--iP~sv---~LWKaAVelE~~~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLNkaRe~i 436 (913)
T KOG0495|consen 367 RVLRKALEH--IPRSV---RLWKAAVELEEPEDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLNKAREII 436 (913)
T ss_pred HHHHHHHHh--CCchH---HHHHHHHhccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 455555543 24433 12333344455555666666666532 22222 233344455566666666533 2
Q ss_pred CCCeeeHHHHHHHHHhCCChhHHHHHHHH----HHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCC--h
Q 005000 178 KDDVVTWNAMFSGYKRVKQFDETRKLFGE----MERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPN--L 251 (720)
Q Consensus 178 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~----m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~ 251 (720)
..+...|.+-...--++|+.+....++.+ +...|+..+...|..=..+|-..|..-.+..+....+..|++.. .
T Consensus 437 ptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~ 516 (913)
T KOG0495|consen 437 PTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRK 516 (913)
T ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhH
Confidence 34555665555555556666665555543 33445555555555555555555555555555555555554321 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCch----------------------------------hHHHHHHHHHh
Q 005000 252 ILENALTDMYAACGEMGFALEIFGNIKN---KDVI----------------------------------SWTAIVTGYIN 294 (720)
Q Consensus 252 ~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~----------------------------------~~~~li~~~~~ 294 (720)
.+|+.-.+.+.+.+.++-|..+|....+ .+.. .|-.....+-.
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~ 596 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWK 596 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHh
Confidence 3444445555555555555555544433 2233 34444444445
Q ss_pred cCCHHHHHHHHhhCCCC---CccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 005000 295 RGQVDMARQYFDQMPER---DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVK 371 (720)
Q Consensus 295 ~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~ 371 (720)
.|++..|+.++....+. +...|-+-+..-..+.+++.|..+|.+.... .|+...|.--+..--.++..++|.+++
T Consensus 597 agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rll 674 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLL 674 (913)
T ss_pred cCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHH
Confidence 55555555555444322 2334445555555555555555555555442 233333333333333345555555555
Q ss_pred HHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 005000 372 TYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK---DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD 448 (720)
Q Consensus 372 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 448 (720)
...++. ++.-...|-.+...|-+.++++.|...|..-.+. .+..|-.+...--+.|+.-.|..++++..-.+ +-|
T Consensus 675 Ee~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~ 752 (913)
T KOG0495|consen 675 EEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKN 752 (913)
T ss_pred HHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCc
Confidence 555443 1222344555555555555555555555544322 33455555555555556666666666655543 223
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005000 449 EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACR 528 (720)
Q Consensus 449 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~ 528 (720)
...|...+..-.+.|+.+.|..+..+... ..+.+...|..-|.+..+.++-..+.+.+++.. -|+.+..++...+.
T Consensus 753 ~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw 828 (913)
T KOG0495|consen 753 ALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFW 828 (913)
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHH
Confidence 44555556666666666666666555542 334445555555555555555555555555543 34555566667778
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCCCccCCcccEEEECCEE
Q 005000 529 VHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVV 597 (720)
Q Consensus 529 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~ 597 (720)
...+++.|...|+++++.+|++..++..+-..+.+.|.-++-.+++++.... .|..|..|..+...+
T Consensus 829 ~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avSK~i 895 (913)
T KOG0495|consen 829 SEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVSKDI 895 (913)
T ss_pred HHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHhhhH
Confidence 8889999999999999999999999999999999999999999999887654 355677776555443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.4e-13 Score=130.49 Aligned_cols=467 Identities=13% Similarity=0.085 Sum_probs=270.0
Q ss_pred chhHHhcccChHHHHHHHHHHHHhCCCCChhHhhHHh-cccccccCChHHHHHHhc----cCCCCC----cchHHHHHHH
Q 005000 19 LISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLV-TFCCSEKGDMKYACKVFR----KIPRPS----VCLWNTMIKG 89 (720)
Q Consensus 19 ~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll-~~~y~~~g~~~~A~~~f~----~~~~~~----~~~~n~li~~ 89 (720)
++..+.+-.....+...+..+++..+-|+.-....-+ +. |.+.+.+..|.+.++ +.|.-+ ....|.+.-.
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni-~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNI-HFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecce-eeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 3333333344566777788888888777765543333 44 778889999999874 444322 2245666667
Q ss_pred HHcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhH--------HHHHHHHHH
Q 005000 90 YSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFV--------QNALISTYC 161 (720)
Q Consensus 90 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--------~~~li~~y~ 161 (720)
+.+.|.++.|+..|+...+. .||-.+-..++-++...|+-+..++.|..++.....+|..- -..|++--.
T Consensus 286 fiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred EEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence 88999999999999998875 47877665666666678899999999999987543332211 111221111
Q ss_pred hcCC--------hHHHHHHH---hcC----CCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 005000 162 LCGE--------VDMARGIF---DVS----YKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSAC 226 (720)
Q Consensus 162 ~~g~--------~~~A~~~f---~~~----~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 226 (720)
+... -..|++.. -.+ ..||-.. -.+-.++.++.-....+..+. -..-...+
T Consensus 364 ~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~------------g~dwcle~lk~s~~~~la~dl--ei~ka~~~ 429 (840)
T KOG2003|consen 364 KNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA------------GCDWCLESLKASQHAELAIDL--EINKAGEL 429 (840)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc------------ccHHHHHHHHHhhhhhhhhhh--hhhHHHHH
Confidence 1111 11122111 111 1122110 011111111111100000000 00011123
Q ss_pred hcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHh--cCCHHHHHHHHhhcCCCCc---hhHHHHHHHHHhcCCHHHH
Q 005000 227 AKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAA--CGEMGFALEIFGNIKNKDV---ISWTAIVTGYINRGQVDMA 301 (720)
Q Consensus 227 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~--~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A 301 (720)
.+.|+++.|.+++..+.+..-.......|.|-..+.- -.++..|.+.-+.....|- ...+.-.+.-..+|++++|
T Consensus 430 lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka 509 (840)
T KOG2003|consen 430 LKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKA 509 (840)
T ss_pred HhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHH
Confidence 4556666666666555554332222222222222222 2234555555444433211 1111111222345667777
Q ss_pred HHHHhhCCCCCccchHHH---HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC
Q 005000 302 RQYFDQMPERDYVLWTAM---IDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNK 378 (720)
Q Consensus 302 ~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~ 378 (720)
.+.+++....|...-.+| .-.+-..|+.++|++.|-++... +..+...+..+.+.|....+..+|.+++.++...
T Consensus 510 ~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl- 587 (840)
T KOG2003|consen 510 AEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL- 587 (840)
T ss_pred HHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-
Confidence 777766666655433333 23456677888888887766432 2345566667777777777777887777665543
Q ss_pred CCCChhHhhHHhhhhhhcCCHHHHHHHHHhcc---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHH
Q 005000 379 VKNDIFVGNALIDMYCKCGDVEKAQRVFREML---RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGV 455 (720)
Q Consensus 379 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 455 (720)
++.|+.+.+-|.+.|-+.|+-..|.+..-+-- ..+..+..-+..-|....-+++|+.+|++..- ++|+..-|..+
T Consensus 588 ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlm 665 (840)
T KOG2003|consen 588 IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLM 665 (840)
T ss_pred CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHH
Confidence 46677888888888888888888887765542 23666666677777888888888888888665 68888888877
Q ss_pred HHHHH-hcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005000 456 LSACT-HTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIK 509 (720)
Q Consensus 456 l~a~~-~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~ 509 (720)
+..|. +.|++++|..+++..- ..++.|.....-|+...+..|.. +|.++-+
T Consensus 666 iasc~rrsgnyqka~d~yk~~h--rkfpedldclkflvri~~dlgl~-d~key~~ 717 (840)
T KOG2003|consen 666 IASCFRRSGNYQKAFDLYKDIH--RKFPEDLDCLKFLVRIAGDLGLK-DAKEYAD 717 (840)
T ss_pred HHHHHHhcccHHHHHHHHHHHH--HhCccchHHHHHHHHHhccccch-hHHHHHH
Confidence 76664 6788999988888874 45677888888888887777743 3444433
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.3e-12 Score=133.01 Aligned_cols=328 Identities=17% Similarity=0.203 Sum_probs=192.5
Q ss_pred CCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhh---cCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 005000 229 LKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGN---IKNKDVISWTAIVTGYINRGQVDMARQYF 305 (720)
Q Consensus 229 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~f 305 (720)
.|++++|..++.++++... -....|-.|...|-..|+.+++...+-. +...|..-|-.+.....+.|.+++|.-.|
T Consensus 152 rg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred hCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 3666666666666666532 2445566666666666666666554432 22334455555555555566666666666
Q ss_pred hhCCCCCccchH---HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC
Q 005000 306 DQMPERDYVLWT---AMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKND 382 (720)
Q Consensus 306 ~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~ 382 (720)
.+..+.++.-|- --+..|-+.|+...|++.|.++.....+.|..-+..++
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i--------------------------- 283 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLI--------------------------- 283 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHH---------------------------
Confidence 555544333332 22345555566666666665555542111111111111
Q ss_pred hhHhhHHhhhhhhcCCHHHHHHHHHhccC--C---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC--------------
Q 005000 383 IFVGNALIDMYCKCGDVEKAQRVFREMLR--K---DKFTWTAMIVGLAINGHGDKSLDMFSQMLRA-------------- 443 (720)
Q Consensus 383 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------------- 443 (720)
-..+..|...++-+.|.+.++.... . +...++.++..|.+..+++.|......+...
T Consensus 284 ----~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~ 359 (895)
T KOG2076|consen 284 ----RRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDER 359 (895)
T ss_pred ----HHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhh
Confidence 1112233333444444444444322 1 2223444444455555555555444444431
Q ss_pred -------------CCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcC--CCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 005000 444 -------------SIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHG--IEPNEAHYGCMVDLLGRAGHLNEALEVI 508 (720)
Q Consensus 444 -------------g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p~~~~~~~li~~~~~~g~~~eA~~~~ 508 (720)
++.++...+ -+.-++.+....+....+..... +.. ..-+...|.-+.++|.+.|++.+|++++
T Consensus 360 ~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~-~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l 437 (895)
T KOG2076|consen 360 RREEPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLV-EDNVWVSDDVDLYLDLADALTNIGKYKEALRLL 437 (895)
T ss_pred ccccccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHH-HhcCChhhhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 122222221 12223334444444433333333 445 3346788999999999999999999999
Q ss_pred HhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCCCccC
Q 005000 509 KNMPM---KPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKT 585 (720)
Q Consensus 509 ~~~~~---~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 585 (720)
..+-. -.+...|--+...+...|.+++|.+.+++++.+.|++..+-..|+.+|.++|+.|+|.+++..+..-+-+..
T Consensus 438 ~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~ 517 (895)
T KOG2076|consen 438 SPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNA 517 (895)
T ss_pred HHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccch
Confidence 99822 226789999999999999999999999999999999999999999999999999999999988764443333
Q ss_pred CcccE
Q 005000 586 PGCSM 590 (720)
Q Consensus 586 ~~~s~ 590 (720)
+++.|
T Consensus 518 e~~a~ 522 (895)
T KOG2076|consen 518 EACAW 522 (895)
T ss_pred hhccc
Confidence 45544
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-14 Score=145.22 Aligned_cols=255 Identities=16% Similarity=0.169 Sum_probs=112.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH-HHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcC
Q 005000 319 MIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILT-ACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCG 397 (720)
Q Consensus 319 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g 397 (720)
+...+.+.|++++|++++++......+|+...|-.++. .+...++.+.|...+..+...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 35566777888888888765544432455545444333 344567788888888877766532 55566777777 6889
Q ss_pred CHHHHHHHHHhccC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCChHHHHHHHHHHHhcCChhhHHHHHHH
Q 005000 398 DVEKAQRVFREMLR--KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRAS-IIPDEVTYVGVLSACTHTGMVDEGREYFAD 474 (720)
Q Consensus 398 ~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 474 (720)
++++|.++++...+ ++...+..++..+...|+++++.+++++..... .+++...|..+...+.+.|+.++|.+.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999998887633 466778888888999999999999999987643 345566777888888999999999999999
Q ss_pred HHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 005000 475 MTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNMP--MKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551 (720)
Q Consensus 475 m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 551 (720)
..+ ..| |......++..+...|+.+++.++++... .+.|+..|..+..++...|+.++|...++++.+..|+|+
T Consensus 172 al~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 172 ALE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 873 345 47788889999999999999888887762 234667889999999999999999999999999999999
Q ss_pred chHHHHHhHhhhcCChhHHHHHHHHHH
Q 005000 552 AVYVLLCNIYAACNRWDNFRELRQMIL 578 (720)
Q Consensus 552 ~~~~~l~~~~~~~g~~~~a~~~~~~m~ 578 (720)
.....+++++...|+.++|.+++++..
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999987764
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.9e-11 Score=119.21 Aligned_cols=189 Identities=16% Similarity=0.181 Sum_probs=141.4
Q ss_pred hhHHhhhhhhcCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHh
Q 005000 386 GNALIDMYCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDE-VTYVGVLSACTH 461 (720)
Q Consensus 386 ~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~ 461 (720)
|--+..+|....+.++-.+.|+...+ .|+.+|..-...+.-.+++++|..=|++.++. .|+. ..|..+.-+..+
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~~~~iQl~~a~Yr 440 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENAYAYIQLCCALYR 440 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--ChhhhHHHHHHHHHHHH
Confidence 44445556666666666666665532 24445555555555567778888888887764 5544 577777777778
Q ss_pred cCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---------HHHHHHHHHHHHhcC
Q 005000 462 TGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN---------SIVWGALLGACRVHR 531 (720)
Q Consensus 462 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~---------~~~~~~ll~~~~~~g 531 (720)
.+.++++...|++.++ .++.-++.|+.....+...+++++|.+.|+.. .++|+ +.+-.+++-.-.+ +
T Consensus 441 ~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~ 517 (606)
T KOG0547|consen 441 QHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK-E 517 (606)
T ss_pred HHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh-h
Confidence 8999999999999864 45666788999999999999999999999886 44443 2333344433333 8
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 532 DAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 532 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
++.+|+.++.++++++|....+|..|+.+-.+.|+.++|.++|++...
T Consensus 518 d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 518 DINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987643
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-09 Score=111.72 Aligned_cols=492 Identities=13% Similarity=0.078 Sum_probs=368.2
Q ss_pred CCChhHhhHHhcccccccCChHHHHHHhccCCC---CCcchHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCcccHHHH
Q 005000 45 LTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPR---PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFL 121 (720)
Q Consensus 45 ~~~~~~~~~ll~~~y~~~g~~~~A~~~f~~~~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 121 (720)
+.++-+|..-+.. ...++|+.++.+..+ ..+..|. +|++..-++.|..+++..++. ++.+...|.+.
T Consensus 377 P~sv~LWKaAVel-----E~~~darilL~rAveccp~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWita 446 (913)
T KOG0495|consen 377 PRSVRLWKAAVEL-----EEPEDARILLERAVECCPQSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITA 446 (913)
T ss_pred CchHHHHHHHHhc-----cChHHHHHHHHHHHHhccchHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHH
Confidence 3456677776666 456678888876543 3444454 455666788888888888764 66677888777
Q ss_pred HHHHhccCChHHHHHHHHHHH----HhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC------CCeeeHHHHHHHH
Q 005000 122 LKGFTRDIAVEFGKELHCHVL----KFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK------DDVVTWNAMFSGY 191 (720)
Q Consensus 122 l~~~~~~~~~~~a~~~~~~~~----~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~ 191 (720)
.+.=-..|..+...++.+..+ ..|...+..-|-.=...+-+.|..-.+..+...... .--.+|+.-...|
T Consensus 447 a~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~ 526 (913)
T KOG0495|consen 447 AKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSC 526 (913)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHH
Confidence 777777888888777776543 457766766666666666666776666666543321 1235788888899
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHH
Q 005000 192 KRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFAL 271 (720)
Q Consensus 192 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 271 (720)
.+.+.++-|..+|...++. .+-+...|......=-..|..+....++..++..- +-....|-....-+-..|++..|+
T Consensus 527 ~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar 604 (913)
T KOG0495|consen 527 EKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAAR 604 (913)
T ss_pred HhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHH
Confidence 9999999999999888764 33345566666666567788888888888888873 335566666777778889999999
Q ss_pred HHHhhcCC---CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC--CCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 005000 272 EIFGNIKN---KDVISWTAIVTGYINRGQVDMARQYFDQMPE--RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRP 346 (720)
Q Consensus 272 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 346 (720)
.++....+ .+...|-+-+.....+..++.|..+|.+... +....|.--+..-.-.++.++|++++++.++. -|
T Consensus 605 ~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp 682 (913)
T KOG0495|consen 605 VILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FP 682 (913)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CC
Confidence 88887665 2456788888888899999999999988754 45667877777777889999999999998875 45
Q ss_pred CHH-HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccC---CCHHHHHHHHH
Q 005000 347 DEF-TIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR---KDKFTWTAMIV 422 (720)
Q Consensus 347 ~~~-t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 422 (720)
+-. .|..+-..+.+.++++.|+..|..-.+. ++..+..|-.|...-.+.|.+-.|..+|+...- .|...|-..|.
T Consensus 683 ~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir 761 (913)
T KOG0495|consen 683 DFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIR 761 (913)
T ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHH
Confidence 544 4555556677788888888877665543 356678899999999999999999999998743 37889999999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHH
Q 005000 423 GLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLN 502 (720)
Q Consensus 423 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 502 (720)
.-.+.|+.+.|..+..+.++. ++-+...|.--|...-+.++-......++ ..+.|+...-.+..++-...+++
T Consensus 762 ~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALk------kce~dphVllaia~lfw~e~k~~ 834 (913)
T KOG0495|consen 762 MELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALK------KCEHDPHVLLAIAKLFWSEKKIE 834 (913)
T ss_pred HHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHH------hccCCchhHHHHHHHHHHHHHHH
Confidence 999999999999999998875 44455667666666666665444443332 34567777888889999999999
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 005000 503 EALEVIKNM-PMKPN-SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLC 558 (720)
Q Consensus 503 eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 558 (720)
+|.+.|.+. ...|| ..+|.-+...+..||.-+.-.+++.+...-+|.....+...+
T Consensus 835 kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avS 892 (913)
T KOG0495|consen 835 KAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHh
Confidence 999999997 56664 678988999999999999999999999999998766655443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.7e-10 Score=120.92 Aligned_cols=214 Identities=15% Similarity=0.111 Sum_probs=136.7
Q ss_pred HHHHHHHHhCCCCChhHhhHHhcccccccCChHHHHHHhccCCCC----CcchHHHHHHHHHcCCCchHHHHHHHHhHhC
Q 005000 34 QIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRP----SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKS 109 (720)
Q Consensus 34 ~~~~~~~~~g~~~~~~~~~~ll~~~y~~~g~~~~A~~~f~~~~~~----~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~ 109 (720)
.+++.+...|+.|+.++|.+||.. |+..|+++.|- +|.-|.-+ +...++.++.+..+.++.+.+-
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiar-Yc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIAR-YCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHH-HcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------
Confidence 456667778999999999999999 99999999988 77666421 2334555555555555544432
Q ss_pred CCCCCcccHHHHHHHHhccCChHH---HHHHHHHHH----HhCC-----------------CCChhHHHHHHHHHHhcCC
Q 005000 110 DVRPDNYTFPFLLKGFTRDIAVEF---GKELHCHVL----KFGF-----------------DSSVFVQNALISTYCLCGE 165 (720)
Q Consensus 110 g~~p~~~t~~~ll~~~~~~~~~~~---a~~~~~~~~----~~g~-----------------~~~~~~~~~li~~y~~~g~ 165 (720)
.|-+.||..++.+|...||+.. ..+.+..+. ..|. -||.. .++....-.|-
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~egl 154 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGL 154 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHH
Confidence 3555555566666655555433 111111111 0111 01100 11111111222
Q ss_pred hHHHHHHHh---------------------------------cCC-CCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 005000 166 VDMARGIFD---------------------------------VSY-KDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG 211 (720)
Q Consensus 166 ~~~A~~~f~---------------------------------~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 211 (720)
++.+.+++. ... .++..++.+.+..-..+|+.+.|..++.+|++.|
T Consensus 155 waqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g 234 (1088)
T KOG4318|consen 155 WAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG 234 (1088)
T ss_pred HHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC
Confidence 222222221 111 2678889999999999999999999999999999
Q ss_pred CCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC
Q 005000 212 VLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGE 266 (720)
Q Consensus 212 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 266 (720)
++.+..-|-.++-+ .++...+..+..-|.+.|+.|+..|+...+-...++|.
T Consensus 235 fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 235 FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 99888877777765 78888888899999999999999888877666555443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.9e-10 Score=115.40 Aligned_cols=261 Identities=16% Similarity=0.095 Sum_probs=205.6
Q ss_pred CccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhh
Q 005000 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391 (720)
Q Consensus 312 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 391 (720)
++........-+...+++.+..++++...+.. ++....+..-|.++...|+...-..+-..+++. .+....+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 33344455566778899999999999988764 555555555555667777666555554555554 3666788999999
Q ss_pred hhhhcCCHHHHHHHHHhccCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhH
Q 005000 392 MYCKCGDVEKAQRVFREMLRKD---KFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEG 468 (720)
Q Consensus 392 ~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 468 (720)
.|.-.|+..+|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. ++-...-+.-+..-|.+.++.+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence 9999999999999999875443 468999999999999999999999887763 222223334455578899999999
Q ss_pred HHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhCC-----C---CC-CHHHHHHHHHHHHhcCCHHHHHH
Q 005000 469 REYFADMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNMP-----M---KP-NSIVWGALLGACRVHRDAEMAEM 538 (720)
Q Consensus 469 ~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~~-----~---~p-~~~~~~~ll~~~~~~g~~~~a~~ 538 (720)
.++|.+.. ++-| |+...+-+.-+....+.+.+|..+|+..- . ++ -..+|+.|..+|++.+.+++|+.
T Consensus 400 e~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 400 EKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 99999875 6666 56777778888888999999999998761 1 12 34568899999999999999999
Q ss_pred HHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHH
Q 005000 539 AAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMIL 578 (720)
Q Consensus 539 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 578 (720)
.+++++.+.|.++.+|..++-+|...|+++.|...+.+..
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988765
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.2e-09 Score=105.31 Aligned_cols=491 Identities=12% Similarity=0.083 Sum_probs=319.3
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 005000 82 LWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYC 161 (720)
Q Consensus 82 ~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 161 (720)
.|-.-..--..+++...|..+|++.+... ..+...|.--+..=.+...+..|+.+++.++..-+..|. .|--.+.+=-
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE 152 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYMEE 152 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHHH
Confidence 34433333444666777777777776543 234444555555556667777777777777764333333 3333444555
Q ss_pred hcCChHHHHHHHhcCC--CCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHH
Q 005000 162 LCGEVDMARGIFDVSY--KDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH 239 (720)
Q Consensus 162 ~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 239 (720)
..|++..|+++|+.-. +|+..+|++.|..=.+.+..+.|..+++...-. .|+..+|.--.+.=-+.|....++.++
T Consensus 153 ~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred HhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 5677888888887533 477778888888777778888888888777653 477777777777777777777788877
Q ss_pred HHHHHc-CC-CCChHHHHHHHHHHHhcCCHHHHHHHHhhcCC----CC-chhHHHHHHHHHhcCCHHHHHHH--------
Q 005000 240 RYVKEC-KI-VPNLILENALTDMYAACGEMGFALEIFGNIKN----KD-VISWTAIVTGYINRGQVDMARQY-------- 304 (720)
Q Consensus 240 ~~~~~~-g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~-~~~~~~li~~~~~~g~~~~A~~~-------- 304 (720)
+.+++. |- ..+...+.+....=.++..++.|.-+|.-..+ .. ...|..+..-=-+-|+.....+.
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 777663 11 11233455555555566677777777654433 11 12222222222233443322222
Q ss_pred HhhCCCC---CccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHHHH---hccCcHHHHHHHH
Q 005000 305 FDQMPER---DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDE-------FTIVSILTAC---ANLGALELGEWVK 371 (720)
Q Consensus 305 f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~~~---~~~~~~~~a~~i~ 371 (720)
++.+... |-.+|-..+..--..|+.+...++|++.+.. ++|-. ..|.-+=-+| ....+.+.+++++
T Consensus 311 YE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vy 389 (677)
T KOG1915|consen 311 YEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVY 389 (677)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 2333333 4456777777777889999999999999865 56632 1222222222 2467888999999
Q ss_pred HHHHHcCCCCChhHhhHHhhhhh----hcCCHHHHHHHHHhcc--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 005000 372 TYIDKNKVKNDIFVGNALIDMYC----KCGDVEKAQRVFREML--RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASI 445 (720)
Q Consensus 372 ~~~~~~~~~~~~~~~~~li~~y~----~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 445 (720)
+..++ -++....++.-+--+|+ ++.++..|.+++.... .|-...+...|..-.+.++++....++++.++-+
T Consensus 390 q~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~- 467 (677)
T KOG1915|consen 390 QACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS- 467 (677)
T ss_pred HHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 98888 34555666666655555 6789999999998875 4566788888888889999999999999999864
Q ss_pred CCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 005000 446 IPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPNSIVWGALL 524 (720)
Q Consensus 446 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~ll 524 (720)
+-|..+|......-...|+.+.|..+|.-+..+-.+.-....|.+.|+-=...|.++.|..+++++ ...+...+|-++.
T Consensus 468 Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA 547 (677)
T KOG1915|consen 468 PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFA 547 (677)
T ss_pred hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHH
Confidence 335578888777778899999999999988744334445567888888888999999999999987 4445666887777
Q ss_pred HHHH-----hcC-----------CHHHHHHHHHHHHhc----CCCCc--chHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 525 GACR-----VHR-----------DAEMAEMAAKQILEL----DPDNE--AVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 525 ~~~~-----~~g-----------~~~~a~~~~~~~~~~----~p~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
..-. +.+ +...|..+|+++... +|... ..+-..-++-...|.-.+...+-+.|.+
T Consensus 548 ~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 548 KFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPK 624 (677)
T ss_pred HHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccH
Confidence 5433 333 567788888888653 34321 1222233344456766666666666643
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.3e-12 Score=130.00 Aligned_cols=274 Identities=15% Similarity=0.134 Sum_probs=215.9
Q ss_pred CCHHHHHHHHhhCCCC--Cc-cchHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccCcHHHHHHH
Q 005000 296 GQVDMARQYFDQMPER--DY-VLWTAMIDGYLRVNRFREALTLFREMQTSN--IRPDEFTIVSILTACANLGALELGEWV 370 (720)
Q Consensus 296 g~~~~A~~~f~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~i 370 (720)
=+..+|...|.+++.. |. .....+..+|...+++++|.++|+...+.. ..-+..+|.+++.-+-+. .+...
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 3467888888886543 32 334567889999999999999999988753 122566788777554321 11222
Q ss_pred HH-HHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 005000 371 KT-YIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKD---KFTWTAMIVGLAINGHGDKSLDMFSQMLRASII 446 (720)
Q Consensus 371 ~~-~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 446 (720)
+. .+.+. -+..+.+|.++.+.|.-+++.+.|++.|++..+-| ..+|+.+..-+.....+|.|...|+..+. +.
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~ 485 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VD 485 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CC
Confidence 22 22222 25567899999999999999999999999997654 56888888888899999999999999875 45
Q ss_pred CCh-HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 005000 447 PDE-VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGA 522 (720)
Q Consensus 447 p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ 522 (720)
|.. ..|-.+...|.++++++.|.-.|+.+. .+.| +.....++...+-+.|+.++|+++++++ ..+| |+..--.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 555 578888899999999999999999875 5566 5667778889999999999999999998 4555 5555555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 523 LLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 523 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
.+..+...+++++|...++++.++-|++...|..++.+|.+.|+.+.|..-+.-|.+
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 666778889999999999999999999999999999999999999999988776654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.1e-10 Score=113.41 Aligned_cols=325 Identities=15% Similarity=0.135 Sum_probs=232.4
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccch-HHHHHHHHh
Q 005000 247 IVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLW-TAMIDGYLR 325 (720)
Q Consensus 247 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~-~~li~~~~~ 325 (720)
...|...+-...-.+-+.|....|...|......-+.-|.+-+....-..+.+.+..+...++..+...- --+..++..
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~e 239 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQE 239 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHH
Confidence 3445555544555566677777888887777665555666555544444555555444444433321111 123345556
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC--CCChhHhhHHhhhhhhcC--CHH-
Q 005000 326 VNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKV--KNDIFVGNALIDMYCKCG--DVE- 400 (720)
Q Consensus 326 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~--~~~~~~~~~li~~y~~~g--~~~- 400 (720)
..+.++++.-.......|+.-+...-+....+.-...++++|..+|+.+.+... -.|..+|+.++ |.+.. ++.
T Consensus 240 l~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~skLs~ 317 (559)
T KOG1155|consen 240 LHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKSKLSY 317 (559)
T ss_pred HHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhHHHHH
Confidence 667888888888888887666665555555556677889999999999988742 12456666655 33332 222
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHhcCChhhHHHHHHHHHHHc
Q 005000 401 KAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDE-VTYVGVLSACTHTGMVDEGREYFADMTIQH 479 (720)
Q Consensus 401 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 479 (720)
-|..++ .+.+--+.|.-.+.+-|+..++.++|+..|++.++. .|.. ..|+.+..-|....+...|++-++.+.
T Consensus 318 LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv--- 391 (559)
T KOG1155|consen 318 LAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV--- 391 (559)
T ss_pred HHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHH---
Confidence 122222 222334456666677788889999999999998885 4554 466767778889999999999999886
Q ss_pred CCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 005000 480 GIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVL 556 (720)
Q Consensus 480 ~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 556 (720)
.+.| |-..|-.|.++|.-.+...-|+-+|++. ..+| |...|.+|...|.+.++.++|+..+++++.....+..+++.
T Consensus 392 di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~ 471 (559)
T KOG1155|consen 392 DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVR 471 (559)
T ss_pred hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHH
Confidence 3444 6778889999999999999999999998 6777 78999999999999999999999999999998878899999
Q ss_pred HHhHhhhcCChhHHHHHHHHHHh
Q 005000 557 LCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 557 l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
|+++|.+.++.++|.+.+++-.+
T Consensus 472 LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999887655
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.1e-12 Score=129.62 Aligned_cols=245 Identities=13% Similarity=0.135 Sum_probs=195.3
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC--CCChhHhhHHhhhhhhcCCHHHHHH
Q 005000 327 NRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKV--KNDIFVGNALIDMYCKCGDVEKAQR 404 (720)
Q Consensus 327 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~--~~~~~~~~~li~~y~~~g~~~~A~~ 404 (720)
-+..+|+..|...... +.-.......+-.+|..++++++++.+|+.+.+... -.+..+|++.+--.-+.=.+..--+
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 3578899999985443 344456777788999999999999999999987531 2356777776654433222221111
Q ss_pred HHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCc
Q 005000 405 VFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP-DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP 483 (720)
Q Consensus 405 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 483 (720)
-+-.+.+..+.+|-++..+|..+++.+.|++.|++.++ +.| ...+|+.+..-+.....+|.|...|+... ..
T Consensus 412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~ 484 (638)
T KOG1126|consen 412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GV 484 (638)
T ss_pred HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cC
Confidence 22223345788999999999999999999999999988 466 55788877777888889999999998654 56
Q ss_pred cHHHHHH---HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 005000 484 NEAHYGC---MVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLC 558 (720)
Q Consensus 484 ~~~~~~~---li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 558 (720)
++.+|++ +...|.|.++++.|+-.|+++ .+.| +.+....+...+.+.|+.|+|.+++++++.++|.|+-.-+..+
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 6677776 456799999999999999998 7888 5667777778899999999999999999999999999999999
Q ss_pred hHhhhcCChhHHHHHHHHHHh
Q 005000 559 NIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 559 ~~~~~~g~~~~a~~~~~~m~~ 579 (720)
.++...+++++|.+.++++++
T Consensus 565 ~il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHH
Confidence 999999999999999999876
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=6e-11 Score=125.09 Aligned_cols=274 Identities=10% Similarity=0.058 Sum_probs=172.2
Q ss_pred CCHHHHHHHHhhCCCC--Ccc-chHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHhccCcHHHHHHH
Q 005000 296 GQVDMARQYFDQMPER--DYV-LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIV--SILTACANLGALELGEWV 370 (720)
Q Consensus 296 g~~~~A~~~f~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~i 370 (720)
|+++.|++.+....+. ++. .|-.......+.|+++.|...|.++.+. .|+..... .....+...|+++.|...
T Consensus 98 Gd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 98 GDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 5555555555444332 122 2222233336677777777777777653 34433222 223455666777777777
Q ss_pred HHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCCC---H--------HHHHHHHHHHHHcCChHHHHHHHHH
Q 005000 371 KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKD---K--------FTWTAMIVGLAINGHGDKSLDMFSQ 439 (720)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~--------~~~~~li~~~~~~g~~~~A~~l~~~ 439 (720)
++.+.+.. +.+..+...+...|.+.|++++|.+++..+.+.. . .+|..++.......+.+...++++.
T Consensus 176 l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 176 VDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 77776655 4456667777777777777777777777775321 1 1233333333344445555555555
Q ss_pred HHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CH
Q 005000 440 MLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NS 517 (720)
Q Consensus 440 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~ 517 (720)
+-+. .+.+......+..++...|+.++|.+++++..+ ..|+.... ++......|+.+++++.+++. ...| |+
T Consensus 255 lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~ 328 (398)
T PRK10747 255 QSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTP 328 (398)
T ss_pred CCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCH
Confidence 4332 234556677777888888888888888877752 34454322 222233458888888888776 4445 45
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 518 IVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 518 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
..+.++...|...+++++|...++++++.+|++ ..+..|+.++.+.|+.++|.+.+++-..
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 567788888888888888888888888888875 5567888888888888888888876543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.5e-10 Score=108.93 Aligned_cols=357 Identities=10% Similarity=0.060 Sum_probs=216.7
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhH--HHH
Q 005000 145 GFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTI--VLV 222 (720)
Q Consensus 145 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--~~l 222 (720)
+...|.+..-...-.+-+.|....|+..|-.....-+..|.+.+.-..-.-+.+.+ ..... |...|..-+ -.+
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~----~~l~~-~l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEIL----SILVV-GLPSDMHWMKKFFL 233 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHH----HHHHh-cCcccchHHHHHHH
Confidence 34455555555555566778888888888766554455555544322222222221 11111 122111111 123
Q ss_pred HHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCC------CchhHHHHHHHHHhcC
Q 005000 223 LSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK------DVISWTAIVTGYINRG 296 (720)
Q Consensus 223 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g 296 (720)
..++-.....+++.+-.......|++.+...-+-...+.-...+++.|..+|+++.+. |..+|+.++-.--.+.
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 3455556677778888888888888877777777777777888899999999988764 4456655544333322
Q ss_pred CHH-HHHHHHhhCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 005000 297 QVD-MARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYID 375 (720)
Q Consensus 297 ~~~-~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~ 375 (720)
++. -|..++ .+.+-.+.|...+.+-|.-.++.++|+..|++..+.+ +-....++.+-.-+....+...|.+-+..++
T Consensus 314 kLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 314 KLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred HHHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 222 222222 2223345666677777888888888888888888754 2223344445555667777777777777777
Q ss_pred HcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhcc---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHH
Q 005000 376 KNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML---RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY 452 (720)
Q Consensus 376 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 452 (720)
+.. +.|-..|-.|..+|.-.+.+.-|+-.|++.. ..|...|.+|..+|.+.++.++|++.|.+....| ..+...+
T Consensus 392 di~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l 469 (559)
T KOG1155|consen 392 DIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSAL 469 (559)
T ss_pred hcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHH
Confidence 654 5566677777777777777777777777663 3377777777777777777777777777777665 3355677
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHc---C-CCc-cHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 005000 453 VGVLSACTHTGMVDEGREYFADMTIQH---G-IEP-NEAHYGCMVDLLGRAGHLNEALEVIKN 510 (720)
Q Consensus 453 ~~ll~a~~~~g~~~~a~~~~~~m~~~~---~-~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~ 510 (720)
..|...+-+.++.++|.+.|+.-.+.. | +.| ......-|..-+.+.+++++|......
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 777777777777777777776654322 2 122 122222244455666666666655444
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.7e-10 Score=121.73 Aligned_cols=289 Identities=16% Similarity=0.109 Sum_probs=173.7
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHH--HHHHHHHHhcCCHHHHH
Q 005000 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILE--NALTDMYAACGEMGFAL 271 (720)
Q Consensus 194 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~--~~li~~y~~~g~~~~A~ 271 (720)
.|++++|.+.+....+..-.| ...|.....+..+.|+.+.+.+.+..+.+. .|+.... ......+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 466666665555433321111 112222233334556666666666665553 2232211 12244555555555555
Q ss_pred HHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 005000 272 EIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTI 351 (720)
Q Consensus 272 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 351 (720)
..++++.+.+ ..++.....+...|.+.|++++|.+++..+.+.+..++. .+
T Consensus 174 ~~l~~~~~~~----------------------------P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~ 224 (398)
T PRK10747 174 HGVDKLLEVA----------------------------PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HR 224 (398)
T ss_pred HHHHHHHhcC----------------------------CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HH
Confidence 5555443211 124455667777888888888888888888877644221 11
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcC
Q 005000 352 VSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAING 428 (720)
Q Consensus 352 ~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 428 (720)
..+-. .++..++....+..+.+...++++.+++ .++.....+...+...|
T Consensus 225 ~~l~~---------------------------~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g 277 (398)
T PRK10747 225 AMLEQ---------------------------QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECD 277 (398)
T ss_pred HHHHH---------------------------HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCC
Confidence 10000 0111122222223344555555555532 36677777888888888
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 005000 429 HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVI 508 (720)
Q Consensus 429 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~ 508 (720)
+.++|.+++++..+. .||.... ++.+....++.+++.+..+...++ .+-|+..+.++..++.+.|++++|.+.|
T Consensus 278 ~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~l 351 (398)
T PRK10747 278 DHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAF 351 (398)
T ss_pred CHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 888888888887773 4444211 233444558888888888887633 2345666778888888899999999888
Q ss_pred HhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005000 509 KNM-PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELD 547 (720)
Q Consensus 509 ~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 547 (720)
+.+ ...|+...+..+...+...|+.++|...+++.+.+.
T Consensus 352 e~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 352 RAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 887 677888888888888889999999999888887753
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.1e-10 Score=118.16 Aligned_cols=223 Identities=13% Similarity=0.033 Sum_probs=106.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhH-------hhHHhhh
Q 005000 320 IDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFV-------GNALIDM 392 (720)
Q Consensus 320 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~-------~~~li~~ 392 (720)
...+.+.|++++|...++.+.+.. +-+...+..+...+...|+++.+...+..+.+.+..+.... +..+++.
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555442 11333444444445555555555555555554442221111 1111111
Q ss_pred hhhcCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHH---HHHHHHHHhcCChh
Q 005000 393 YCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY---VGVLSACTHTGMVD 466 (720)
Q Consensus 393 y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~ 466 (720)
-......+...+.++..++ .+...+..+...+...|+.++|.+++++..+. .||.... ..........++.+
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~ 316 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNE 316 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChH
Confidence 1112223344444444443 36667777777777777777777777777764 3343211 11111122335555
Q ss_pred hHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005000 467 EGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKN--M-PMKPNSIVWGALLGACRVHRDAEMAEMAAKQI 543 (720)
Q Consensus 467 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~--~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 543 (720)
.+.+.++...+...-.|+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.+++++.
T Consensus 317 ~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 317 KLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555543222222213444555555666666666666652 2 34455555555555555566666665555555
Q ss_pred Hh
Q 005000 544 LE 545 (720)
Q Consensus 544 ~~ 545 (720)
+.
T Consensus 397 l~ 398 (409)
T TIGR00540 397 LG 398 (409)
T ss_pred HH
Confidence 43
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-09 Score=115.39 Aligned_cols=464 Identities=11% Similarity=0.057 Sum_probs=263.7
Q ss_pred HHHHHhHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCC
Q 005000 101 LIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD 180 (720)
Q Consensus 101 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~ 180 (720)
.++-.|...|+.||.+||..++..|+..|+++.|- +|..|.-..++....+++.++......++.+.+. .|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 35566777788888888888888888888887777 7777777777777778888888777777776664 566
Q ss_pred eeeHHHHHHHHHhCCChhHHHHHHHH-HHH-------CCCCCCHhhHHHHHHH--------------HhcCCCchHHHHH
Q 005000 181 VVTWNAMFSGYKRVKQFDETRKLFGE-MER-------KGVLPTSVTIVLVLSA--------------CAKLKDLDVGKRA 238 (720)
Q Consensus 181 ~~~~~~li~~~~~~g~~~~A~~l~~~-m~~-------~g~~p~~~t~~~ll~~--------------~~~~~~~~~a~~~ 238 (720)
..+|+.|..+|.+.|+... ++..++ |.. .|+..-..-+-..+.. ....|-++.+.++
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888887654 222222 211 1221111111111111 1111222222222
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCC-CCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCC----c
Q 005000 239 HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKN-KDVISWTAIVTGYINRGQVDMARQYFDQMPERD----Y 313 (720)
Q Consensus 239 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~----~ 313 (720)
...+...... .+... -|=.+-.....+++-..+.....+ ++..++...+..-...|+++.|..++..|.++. .
T Consensus 162 l~~~Pvsa~~-~p~~v-fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~ 239 (1088)
T KOG4318|consen 162 LAKVPVSAWN-APFQV-FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA 239 (1088)
T ss_pred HhhCCccccc-chHHH-HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence 2221111100 00111 011111222334555555555444 788888888888889999999999999998762 2
Q ss_pred cchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHH-----------HHHHHHc-----
Q 005000 314 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV-----------KTYIDKN----- 377 (720)
Q Consensus 314 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i-----------~~~~~~~----- 377 (720)
.-|-.++-+ .+...-+..+++-|+..|+.|+..|+..-+-.+...|....+... ...+...
T Consensus 240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k 316 (1088)
T KOG4318|consen 240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANK 316 (1088)
T ss_pred ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHH
Confidence 223334433 777888888888999999999999998888777776544332211 1111100
Q ss_pred --------------------CCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCC-------CHHHHHHHHHHHHHcCCh
Q 005000 378 --------------------KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK-------DKFTWTAMIVGLAINGHG 430 (720)
Q Consensus 378 --------------------~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~ 430 (720)
|+.....+|...+.. ...|.-++..++-..+..| ++..+..++.-|.+.-+.
T Consensus 317 ~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~ 395 (1088)
T KOG4318|consen 317 RLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIER 395 (1088)
T ss_pred HHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHh
Confidence 111111222211111 1145555555555554332 333444333333221110
Q ss_pred ------------------HHHHHHHHHHHHCCCCCChH----------------------------HHHHHHHHHHhcCC
Q 005000 431 ------------------DKSLDMFSQMLRASIIPDEV----------------------------TYVGVLSACTHTGM 464 (720)
Q Consensus 431 ------------------~~A~~l~~~m~~~g~~p~~~----------------------------t~~~ll~a~~~~g~ 464 (720)
.++.....+... ...||.. .-+.++..|.+.-+
T Consensus 396 ~~~~~i~~~~qgls~~l~se~tp~vsell~-~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n 474 (1088)
T KOG4318|consen 396 HICSRIYYAGQGLSLNLNSEDTPRVSELLE-NLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYN 474 (1088)
T ss_pred hHHHHHHHHHHHHHhhhchhhhHHHHHHHH-HhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 000000001100 0122221 12233334444434
Q ss_pred hhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005000 465 VDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP-----MKPNSIVWGALLGACRVHRDAEMAEMA 539 (720)
Q Consensus 465 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~-----~~p~~~~~~~ll~~~~~~g~~~~a~~~ 539 (720)
..++...-+... ..-+ ...|..||+.+....+.++|..+.++.. +.-|..-+..+.....+++....+..+
T Consensus 475 ~lK~l~~~ekye-~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~ti 550 (1088)
T KOG4318|consen 475 KLKILCDEEKYE-DLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTI 550 (1088)
T ss_pred HHHHHHHHHHHH-HHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHH
Confidence 444443322221 1111 2568899999999999999999999883 223556677888888999998888888
Q ss_pred HHHHHhc---CCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCCCcc
Q 005000 540 AKQILEL---DPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKK 584 (720)
Q Consensus 540 ~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 584 (720)
++++.+. .|.-......+.+--+..|+.+...++.+-+...|+..
T Consensus 551 L~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 551 LYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 8887763 34445566677777888999999999999998888765
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.7e-09 Score=102.01 Aligned_cols=411 Identities=13% Similarity=0.137 Sum_probs=282.7
Q ss_pred hcCChHHHHHHHhcCCC---CCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHH
Q 005000 162 LCGEVDMARGIFDVSYK---DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRA 238 (720)
Q Consensus 162 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 238 (720)
..+++..|+.+|+.... +++..|--.+..=.++.....|..+++.....=...|. .|---+..=-.+|++..|+++
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHHHHhcccHHHHHH
Confidence 34566777777775543 45666777777777777777777777776654222222 222222233456788888888
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcC--CCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCC-----
Q 005000 239 HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIK--NKDVISWTAIVTGYINRGQVDMARQYFDQMPER----- 311 (720)
Q Consensus 239 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~----- 311 (720)
|+.-.+. .|+...|++.|+.=.+-..++.|..++++.. .|++.+|--...-=.++|....|..+|+...+.
T Consensus 164 ferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~ 241 (677)
T KOG1915|consen 164 FERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDE 241 (677)
T ss_pred HHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHH
Confidence 8877765 7788888888888888888888888888754 478888877777777888888888888765532
Q ss_pred -CccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCcHHHHHHH--------HHHHHHcCCC
Q 005000 312 -DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPD--EFTIVSILTACANLGALELGEWV--------KTYIDKNKVK 380 (720)
Q Consensus 312 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~i--------~~~~~~~~~~ 380 (720)
+...+++....-.++..++.|..+|+-.++. ++-+ ...|.....-=-+-|+....... +...++.+ +
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p 319 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-P 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-C
Confidence 2334555555555667788888888877764 2222 22333333222233433322211 22233322 4
Q ss_pred CChhHhhHHhhhhhhcCCHHHHHHHHHhccCC-----CHHHHHHHH--------HHHHHcCChHHHHHHHHHHHHCCCCC
Q 005000 381 NDIFVGNALIDMYCKCGDVEKAQRVFREMLRK-----DKFTWTAMI--------VGLAINGHGDKSLDMFSQMLRASIIP 447 (720)
Q Consensus 381 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li--------~~~~~~g~~~~A~~l~~~m~~~g~~p 447 (720)
.|-.+|--.+..-...|+.+...++|+..+.. .-..|.-.| -.-....+.+.+.++|+..++. ++-
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPH 398 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPH 398 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCc
Confidence 45566777777778889999999999988532 112333322 1123467889999999999883 444
Q ss_pred ChHHHHHHHHHH----HhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 005000 448 DEVTYVGVLSAC----THTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWG 521 (720)
Q Consensus 448 ~~~t~~~ll~a~----~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~ 521 (720)
...||.-+--.+ .++.++..|.+++.... |.-|...++...|++=.+.+.++....++++. ...| +-.+|.
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~ 475 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWS 475 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHH
Confidence 557777654444 36788999999999875 88999999999999999999999999999987 6777 678999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCc--chHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 522 ALLGACRVHRDAEMAEMAAKQILELDPDNE--AVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 522 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
.....-...|+.+.|..+|+-++....-+. ..+-..++.-...|.++.|+.+++.+.++.
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 999888999999999999999887543221 344455666678899999999999998764
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.8e-10 Score=118.94 Aligned_cols=281 Identities=10% Similarity=0.025 Sum_probs=198.4
Q ss_pred hcCCHHHHHHHHhhCCCC--C-ccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 005000 294 NRGQVDMARQYFDQMPER--D-YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWV 370 (720)
Q Consensus 294 ~~g~~~~A~~~f~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i 370 (720)
..|+++.|.+.+.+..+. + ...+-.....+.+.|+++.|.+.+.+..+....+...............|+++.|...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 456777777776665543 2 2233444566778899999999999987653222222333346667789999999999
Q ss_pred HHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCC---CHHHHHH----HHHHHHHcCChHHHHHHHHHHHHC
Q 005000 371 KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK---DKFTWTA----MIVGLAINGHGDKSLDMFSQMLRA 443 (720)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~----li~~~~~~g~~~~A~~l~~~m~~~ 443 (720)
++.+.+.. +.+..+...+...|.+.|++++|.+.+....+. +...+.. ...++...+..+++.+.+.++...
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99999886 556778889999999999999999999988643 3333321 112223334444445566666654
Q ss_pred CC---CCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHH---HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 005000 444 SI---IPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAH---YGCMVDLLGRAGHLNEALEVIKNM-PMKPN 516 (720)
Q Consensus 444 g~---~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~---~~~li~~~~~~g~~~eA~~~~~~~-~~~p~ 516 (720)
.. +.+...+..+...+...|+.++|.+.+++..++ .|+... .....-.....++.+++.+.+++. ...|+
T Consensus 255 ~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~ 331 (409)
T TIGR00540 255 QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD 331 (409)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC
Confidence 22 126677888888999999999999999998743 344331 111222223457888888888776 44553
Q ss_pred -H--HHHHHHHHHHHhcCCHHHHHHHHH--HHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 517 -S--IVWGALLGACRVHRDAEMAEMAAK--QILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 517 -~--~~~~~ll~~~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
+ ....++...|.+.|++++|.+.++ .+++..|++. .+..++.++.+.|+.++|.+++++...
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~-~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN-DLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4 567799999999999999999999 5777888764 477999999999999999999987543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.9e-10 Score=111.19 Aligned_cols=197 Identities=13% Similarity=0.049 Sum_probs=165.7
Q ss_pred ChhHhhHHhhhhhhcCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 005000 382 DIFVGNALIDMYCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSA 458 (720)
Q Consensus 382 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 458 (720)
....+..+...|.+.|++++|...|++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 356677888999999999999999998753 356788888999999999999999999998864 3345677778888
Q ss_pred HHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 005000 459 CTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMA 536 (720)
Q Consensus 459 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 536 (720)
+...|++++|.+.++.+............+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998742222334567778899999999999999999987 3444 567888899999999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 537 EMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 537 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
...++++++..|+++..+..++.++...|++++|....+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999888888889999999999999999999887754
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-11 Score=124.59 Aligned_cols=161 Identities=16% Similarity=0.188 Sum_probs=75.9
Q ss_pred cchHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhh
Q 005000 314 VLWTAMIDGYLRVNRFREALTLFREMQTSN-IRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDM 392 (720)
Q Consensus 314 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 392 (720)
..+..++..+.+.++++++..+++.+.... .+++...|......+.+.|+.+.|...++.+++.. +.|..+.+.++..
T Consensus 111 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~ 189 (280)
T PF13429_consen 111 RYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWL 189 (280)
T ss_dssp -------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHH
T ss_pred chhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 344445555555555555555555554322 23344444555555555666666666666665543 3345556666666
Q ss_pred hhhcCCHHHHHHHHHhcc---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHH
Q 005000 393 YCKCGDVEKAQRVFREML---RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGR 469 (720)
Q Consensus 393 y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 469 (720)
+...|+.+++.++++... ..|...|..+..+|...|++++|+..|++..... +.|..+...+..++...|+.++|.
T Consensus 190 li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 190 LIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp HCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---------
T ss_pred HHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccc
Confidence 666666666555555442 3355566667777777777777777777766642 224556666677777777777777
Q ss_pred HHHHHHH
Q 005000 470 EYFADMT 476 (720)
Q Consensus 470 ~~~~~m~ 476 (720)
++..++.
T Consensus 269 ~~~~~~~ 275 (280)
T PF13429_consen 269 RLRRQAL 275 (280)
T ss_dssp -------
T ss_pred ccccccc
Confidence 7766543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.9e-09 Score=105.20 Aligned_cols=463 Identities=11% Similarity=0.035 Sum_probs=247.1
Q ss_pred HHHHHHHHHHHHhCCCCChhHhhHHhcccccccCChHHHHHHhc--cCCCCCcchHHHHHHHHHcCCCchHHHHHHH---
Q 005000 30 HQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFR--KIPRPSVCLWNTMIKGYSRIDSHKNGVLIYL--- 104 (720)
Q Consensus 30 ~~~~~~~~~~~~~g~~~~~~~~~~ll~~~y~~~g~~~~A~~~f~--~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~--- 104 (720)
+.+..+-..+...+. |+.-.--+.++ |.-.|..+.|..+.. .+...|..+.......+.+..++++|+.++.
T Consensus 33 ~~a~f~adkV~~l~~--dp~d~~~~aq~-l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~ 109 (611)
T KOG1173|consen 33 KTALFWADKVAGLTN--DPADIYWLAQV-LYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGH 109 (611)
T ss_pred hHHHHHHHHHHhccC--ChHHHHHHHHH-HHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 344444444444443 33333345666 556677777777764 4567888899999999999999999999887
Q ss_pred -HhHhC---------CCCCCccc----HHHHH-------HHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 005000 105 -DMLKS---------DVRPDNYT----FPFLL-------KGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLC 163 (720)
Q Consensus 105 -~m~~~---------g~~p~~~t----~~~ll-------~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 163 (720)
.+..- -+.+|..- -+.-. +.+......++|+..+.+.+.. |+.-+.++...-...
T Consensus 110 ~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~----D~~c~Ea~~~lvs~~ 185 (611)
T KOG1173|consen 110 VETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA----DAKCFEAFEKLVSAH 185 (611)
T ss_pred hhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc----chhhHHHHHHHHHHH
Confidence 22110 01111110 00001 1223344556666666665542 333333322221111
Q ss_pred -CChHHHHHHHhcCCCC-CeeeHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHH
Q 005000 164 -GEVDMARGIFDVSYKD-DVVTWNAMFSGYKR----VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKR 237 (720)
Q Consensus 164 -g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 237 (720)
-..++-..+|+..+-. ...-.-..+..+.. ...-++....-.+-.-.|..-+......-..-|...+++.+..+
T Consensus 186 mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~k 265 (611)
T KOG1173|consen 186 MLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLK 265 (611)
T ss_pred hcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHH
Confidence 0111223333321100 00000000111100 00000000000001111223344444445555666777888888
Q ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCc-
Q 005000 238 AHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKN---KDVISWTAIVTGYINRGQVDMARQYFDQMPERDY- 313 (720)
Q Consensus 238 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~- 313 (720)
+.+.+.+.. ++....+..-|..+...|+..+-..+=.++.+ ...++|-++.--|.-.|+..+|++.|.+...-|.
T Consensus 266 it~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~ 344 (611)
T KOG1173|consen 266 ITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT 344 (611)
T ss_pred HhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc
Confidence 887777753 33444455555566666665554444444443 2467888888888888888888888877654443
Q ss_pred --cchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhh
Q 005000 314 --VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391 (720)
Q Consensus 314 --~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 391 (720)
..|-.....|+-.|..|+|+..+...-+.- +-....+.-+---|.+.++++.|.+++.++.... +.|+.+.+-+.-
T Consensus 345 fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgv 422 (611)
T KOG1173|consen 345 FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGV 422 (611)
T ss_pred ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhh
Confidence 468888888888888888888777665431 1111112223334666777777777777776653 556677777776
Q ss_pred hhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHH
Q 005000 392 MYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREY 471 (720)
Q Consensus 392 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 471 (720)
++.+.+.+.+|...|+....+ .+...... .--..+++.|..+|.+.+.+++|+..
T Consensus 423 vay~~~~y~~A~~~f~~~l~~------------------------ik~~~~e~-~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 423 VAYTYEEYPEALKYFQKALEV------------------------IKSVLNEK-IFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred eeehHhhhHHHHHHHHHHHHH------------------------hhhccccc-cchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 666677777777777654210 00000000 01223556666666666666667666
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 005000 472 FADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPNSIVWGALLGACRV 529 (720)
Q Consensus 472 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~ll~~~~~ 529 (720)
|++... -.+-+..++.++.-.|...|+++.|.+.|.+. .++|+..+-..+++.+..
T Consensus 478 ~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 478 YQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 666542 22345666666666666777777777776665 566766666666655443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.8e-07 Score=93.59 Aligned_cols=430 Identities=15% Similarity=0.204 Sum_probs=265.9
Q ss_pred HhhHHhcccccccCChHHHHHHhcc----CCC-CCcchHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHH
Q 005000 50 VQNKLVTFCCSEKGDMKYACKVFRK----IPR-PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKG 124 (720)
Q Consensus 50 ~~~~ll~~~y~~~g~~~~A~~~f~~----~~~-~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 124 (720)
+|-.-++. ..+.|++..-+++|++ ||. .....|...|.-....+-++-++.+|++.++- .|. .-.--+.-
T Consensus 104 Iwl~Ylq~-l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~--~~eeyie~ 178 (835)
T KOG2047|consen 104 IWLDYLQF-LIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APE--AREEYIEY 178 (835)
T ss_pred HHHHHHHH-HHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHH--HHHHHHHH
Confidence 44444445 5578999999999986 332 34556999999888999999999999999873 343 35666777
Q ss_pred HhccCChHHHHHHHHHHHHhC------CCCChhHHHHHHHHHHhcCCh---HHHHHHHhcCCCC--C--eeeHHHHHHHH
Q 005000 125 FTRDIAVEFGKELHCHVLKFG------FDSSVFVQNALISTYCLCGEV---DMARGIFDVSYKD--D--VVTWNAMFSGY 191 (720)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~y~~~g~~---~~A~~~f~~~~~~--~--~~~~~~li~~~ 191 (720)
++..+++++|.+.+..++... .+.+-..|+-+-+..++.-+. -....+++.+..+ | ...|++|..-|
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY 258 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence 888999999999888876532 234555666666666655332 2234455555442 3 34799999999
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCC----------------------CchHHHHHHHHHHHcCC--
Q 005000 192 KRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLK----------------------DLDVGKRAHRYVKECKI-- 247 (720)
Q Consensus 192 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~----------------------~~~~a~~~~~~~~~~g~-- 247 (720)
.+.|.+++|.++|++....- .+..-|..+.++|+.-. +++....-++.++..+.
T Consensus 259 Ir~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~ 336 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLL 336 (835)
T ss_pred HHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchH
Confidence 99999999999999876642 23334555555554321 12222333333333221
Q ss_pred ---------CCChHHHHHHHHHHHhcCCHHHHHHHHhhcCC---C------CchhHHHHHHHHHhcCCHHHHHHHHhhCC
Q 005000 248 ---------VPNLILENALTDMYAACGEMGFALEIFGNIKN---K------DVISWTAIVTGYINRGQVDMARQYFDQMP 309 (720)
Q Consensus 248 ---------~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~------~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 309 (720)
+.++..|..-+.. ..|+..+-...|.+... | -...|..+.+.|-..|+++.|+.+|++..
T Consensus 337 lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~ 414 (835)
T KOG2047|consen 337 LNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT 414 (835)
T ss_pred HHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence 1122222222222 23455555555555432 1 22468888889999999999999999987
Q ss_pred CCCcc-------chHHHHHHHHhcCChhHHHHHHHHHHHCCCC----------C-CH------HHHHHHHHHHhccCcHH
Q 005000 310 ERDYV-------LWTAMIDGYLRVNRFREALTLFREMQTSNIR----------P-DE------FTIVSILTACANLGALE 365 (720)
Q Consensus 310 ~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----------p-~~------~t~~~ll~~~~~~~~~~ 365 (720)
+-+-. +|-.-...=.++.+++.|+++.+......-. | .. ..++..+..--..|-++
T Consensus 415 ~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 415 KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 65433 4555555556778889999988876542211 1 11 12222333334456777
Q ss_pred HHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccC----CCH-HHHHHHHHHHHH---cCChHHHHHHH
Q 005000 366 LGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR----KDK-FTWTAMIVGLAI---NGHGDKSLDMF 437 (720)
Q Consensus 366 ~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~-~~~~~li~~~~~---~g~~~~A~~l~ 437 (720)
..+.+++.+++..+.....+ -.....+....-++++.+++++-+. |++ ..||..+.-+.+ .-..+.|..+|
T Consensus 495 stk~vYdriidLriaTPqii-~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLF 573 (835)
T KOG2047|consen 495 STKAVYDRIIDLRIATPQII-INYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLF 573 (835)
T ss_pred HHHHHHHHHHHHhcCCHHHH-HHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 78888888887765332222 2233334455667888888887642 343 367777655543 23568899999
Q ss_pred HHHHHCCCCCChHHHHHHHHHH--HhcCChhhHHHHHHHHHHHcCCCcc--HHHHHHHH
Q 005000 438 SQMLRASIIPDEVTYVGVLSAC--THTGMVDEGREYFADMTIQHGIEPN--EAHYGCMV 492 (720)
Q Consensus 438 ~~m~~~g~~p~~~t~~~ll~a~--~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li 492 (720)
++.++ |.+|...-+.-|+-+- -.-|....|+.+++++. .++++. ...|+..|
T Consensus 574 EqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat--~~v~~a~~l~myni~I 629 (835)
T KOG2047|consen 574 EQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT--SAVKEAQRLDMYNIYI 629 (835)
T ss_pred HHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--hcCCHHHHHHHHHHHH
Confidence 99988 6777765444444332 24588888888888764 344442 23444443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.6e-12 Score=88.63 Aligned_cols=50 Identities=30% Similarity=0.753 Sum_probs=48.1
Q ss_pred CCcchHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhc
Q 005000 78 PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR 127 (720)
Q Consensus 78 ~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 127 (720)
||+++||+||++|++.|++++|+++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999874
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.2e-08 Score=98.12 Aligned_cols=289 Identities=16% Similarity=0.155 Sum_probs=172.3
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 005000 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEI 273 (720)
Q Consensus 194 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 273 (720)
.|+|.+|.++..+-.+.+-.| ...|..-..+.-..||.+.+-..+.++.+..-.++..+.-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 467777777776665554333 2334455556667777777777777777764455555666666666666666666554
Q ss_pred HhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 005000 274 FGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVS 353 (720)
Q Consensus 274 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 353 (720)
.++.. .|..+++.........|.+.|++.+...++..|.+.|+--|...-
T Consensus 176 v~~ll----------------------------~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-- 225 (400)
T COG3071 176 VDQLL----------------------------EMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-- 225 (400)
T ss_pred HHHHH----------------------------HhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH--
Confidence 44332 334456666777888888888888888888888888754443211
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhcc---CCCHHHHHHHHHHHHHcCCh
Q 005000 354 ILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML---RKDKFTWTAMIVGLAINGHG 430 (720)
Q Consensus 354 ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 430 (720)
++- ..+++.+++-....+..+.-...++..+ +.++..-.+++.-+.+.|+.
T Consensus 226 ---------------~le-----------~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~ 279 (400)
T COG3071 226 ---------------RLE-----------QQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDH 279 (400)
T ss_pred ---------------HHH-----------HHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCCh
Confidence 000 1122233332222233333333444443 22455555666666677777
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 005000 431 DKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKN 510 (720)
Q Consensus 431 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~ 510 (720)
++|.++..+..+.+..|+-. .+-.+.+.++...-++..+...+..+..| ..+.+|...|.+.+.|.+|.+.|+.
T Consensus 280 ~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~lea 353 (400)
T COG3071 280 DEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEA 353 (400)
T ss_pred HHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 77777777777766666522 22245566666666666665554444444 4556666667777777777777665
Q ss_pred C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005000 511 M-PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE 545 (720)
Q Consensus 511 ~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 545 (720)
. +.+|+..+|+-+..++.+.|+.+.|.+..++.+-
T Consensus 354 Al~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 354 ALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4 5666666676666777777777776666666653
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.4e-11 Score=86.91 Aligned_cols=50 Identities=40% Similarity=0.725 Sum_probs=47.9
Q ss_pred CCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc
Q 005000 179 DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAK 228 (720)
Q Consensus 179 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 228 (720)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1e-07 Score=97.67 Aligned_cols=438 Identities=13% Similarity=0.142 Sum_probs=243.2
Q ss_pred HHHHHcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHH--HHHHHH--h
Q 005000 87 IKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNA--LISTYC--L 162 (720)
Q Consensus 87 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~y~--~ 162 (720)
+.-+..+|++++|++.-..++..+ +.|...+..-+-+..+.+.++.|..+.+. .+ -..+++. +=.+|| +
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~---~~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NG---ALLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cc---hhhhcchhhHHHHHHHHH
Confidence 455667788888888888888765 44556677777777888888887744332 11 1112222 245554 5
Q ss_pred cCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH-hhHHHHHHHHhcCCCchHHHHHHHH
Q 005000 163 CGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTS-VTIVLVLSACAKLKDLDVGKRAHRY 241 (720)
Q Consensus 163 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~ 241 (720)
.+..|+|...++...+.+..+-..-...+.+.|++++|+++|+.+.+.+..--. ..-..++.+-.. -.+. .
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~----~ 163 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ----L 163 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH----H
Confidence 677888888877544444445455556677778888888888877665432111 111111111100 0000 1
Q ss_pred HHHcCCCCChHHHHH---HHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhh-CCCCCc----
Q 005000 242 VKECKIVPNLILENA---LTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQ-MPERDY---- 313 (720)
Q Consensus 242 ~~~~g~~~~~~~~~~---li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~-~~~~~~---- 313 (720)
+......| ..+|.. ..-.+...|++.+|+++++... ++..+ +.+.|.
T Consensus 164 ~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~------------------------~~~~e~l~~~d~~eEe 218 (652)
T KOG2376|consen 164 LQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKAL------------------------RICREKLEDEDTNEEE 218 (652)
T ss_pred HHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHH------------------------HHHHHhhcccccchhh
Confidence 11111111 111211 2233444555555555554331 00000 011110
Q ss_pred ------cchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH---HHHHhccCcHHH--------------HHHH
Q 005000 314 ------VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSI---LTACANLGALEL--------------GEWV 370 (720)
Q Consensus 314 ------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l---l~~~~~~~~~~~--------------a~~i 370 (720)
..--.|.-.+...|+.++|..++...++.. .+|....... |.+...-.++-. +...
T Consensus 219 ie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~ 297 (652)
T KOG2376|consen 219 IEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFL 297 (652)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHH
Confidence 011234455677888999999888888765 4454322222 112211111111 0111
Q ss_pred HHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCCC-HHHHHHHHHHH--HHcCChHHHHHHHHHHHHCCCCC
Q 005000 371 KTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKD-KFTWTAMIVGL--AINGHGDKSLDMFSQMLRASIIP 447 (720)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~g~~p 447 (720)
...+... -......-+.++.+|. +.-+.+.++-...+... ...+.+++... .+...+.+|.+++...-+. .|
T Consensus 298 l~~Ls~~-qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p 372 (652)
T KOG2376|consen 298 LSKLSKK-QKQAIYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HP 372 (652)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CC
Confidence 1111110 0112233345566654 45566777766665443 34455555433 2233577888888877664 44
Q ss_pred Ch--HHHHHHHHHHHhcCChhhHHHHHH--------HHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC------
Q 005000 448 DE--VTYVGVLSACTHTGMVDEGREYFA--------DMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM------ 511 (720)
Q Consensus 448 ~~--~t~~~ll~a~~~~g~~~~a~~~~~--------~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~------ 511 (720)
+. +.....+......|+++.|.+++. .+. +.+..| .+...++.+|.+.+.-+-|.+++.+.
T Consensus 373 ~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~-~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~ 449 (652)
T KOG2376|consen 373 EKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSIL-EAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRK 449 (652)
T ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhh-hhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHH
Confidence 44 344455666788999999999998 443 334444 45566889999988877676666654
Q ss_pred --CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHH
Q 005000 512 --PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELR 574 (720)
Q Consensus 512 --~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 574 (720)
..++ -..+|.-+...-.++|+.++|...++++++.+|++......+..+|++.. .+.|..+-
T Consensus 450 ~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l~ 514 (652)
T KOG2376|consen 450 QQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESLS 514 (652)
T ss_pred hcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHHh
Confidence 1222 22344444555567899999999999999999999999999999998764 55565553
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-08 Score=107.57 Aligned_cols=230 Identities=17% Similarity=0.145 Sum_probs=170.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHc-----CC-CCC-hhHhhHHhhhhhhcCCHHHHHHHHHhccC-------C--
Q 005000 349 FTIVSILTACANLGALELGEWVKTYIDKN-----KV-KND-IFVGNALIDMYCKCGDVEKAQRVFREMLR-------K-- 412 (720)
Q Consensus 349 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~-----~~-~~~-~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~-- 412 (720)
.|...+...|...|+++.|..+++..++. |. .|. ....+.+...|...+++++|..+|+++.. +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45555667777777777777777766543 11 112 22334577788889999999988888732 1
Q ss_pred --CHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCC-Ch-HHHHHHHHHHHhcCChhhHHHHHHHHHHHcC--C
Q 005000 413 --DKFTWTAMIVGLAINGHGDKSLDMFSQMLR-----ASIIP-DE-VTYVGVLSACTHTGMVDEGREYFADMTIQHG--I 481 (720)
Q Consensus 413 --~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p-~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~ 481 (720)
-..+++.|...|...|++++|...+++..+ .|..+ .. .-++.+...|...+.+++|..+++...+.+. +
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 234777888889999999988888877654 22222 22 2456677789999999999999988765443 2
Q ss_pred Ccc----HHHHHHHHHHHHhcCCHHHHHHHHHhC-------C--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Q 005000 482 EPN----EAHYGCMVDLLGRAGHLNEALEVIKNM-------P--MKP-NSIVWGALLGACRVHRDAEMAEMAAKQILEL- 546 (720)
Q Consensus 482 ~p~----~~~~~~li~~~~~~g~~~eA~~~~~~~-------~--~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 546 (720)
.++ ..+++.|..+|...|+++||+++++++ . ..+ ....++.|..+|...++++.|.++|.+...+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 467999999999999999999999887 1 123 2456788899999999999999999888754
Q ss_pred ---CCCC---cchHHHHHhHhhhcCChhHHHHHHHHHH
Q 005000 547 ---DPDN---EAVYVLLCNIYAACNRWDNFRELRQMIL 578 (720)
Q Consensus 547 ---~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 578 (720)
.|++ ..+|..|+.+|.++|++++|.++...+.
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3444 4578899999999999999999988775
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.9e-07 Score=92.04 Aligned_cols=498 Identities=11% Similarity=0.104 Sum_probs=316.3
Q ss_pred hHHHHHHhccCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhHhC-CCCCCcccHHHHHHHHhccCChHHHHHHHHHHHH
Q 005000 65 MKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKS-DVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLK 143 (720)
Q Consensus 65 ~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 143 (720)
++.+.....+||+ .|-.-+..+..+|+.......|++.++. .+.-....|...++-....+-++.+..+++.-++
T Consensus 91 ~er~lv~mHkmpR----Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk 166 (835)
T KOG2047|consen 91 FERCLVFMHKMPR----IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK 166 (835)
T ss_pred HHHHHHHHhcCCH----HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 4555666666664 6888888899999999999999988764 2223456788899988889999999999999888
Q ss_pred hCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC----------CeeeHHHHHHHHHhCCChh---HHHHHHHHHHHC
Q 005000 144 FGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD----------DVVTWNAMFSGYKRVKQFD---ETRKLFGEMERK 210 (720)
Q Consensus 144 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~----------~~~~~~~li~~~~~~g~~~---~A~~l~~~m~~~ 210 (720)
. ++...+-.|..+++.+++++|.+.+...... +-..|+-+-...+++-+.- ..-.+++.+..
T Consensus 167 ~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~- 241 (835)
T KOG2047|consen 167 V----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR- 241 (835)
T ss_pred c----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc-
Confidence 3 4445788889999999999999998766542 3446777766666654433 33344444443
Q ss_pred CCCCCH--hhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC----------------------
Q 005000 211 GVLPTS--VTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGE---------------------- 266 (720)
Q Consensus 211 g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~---------------------- 266 (720)
.-+|. ..|.+|..-|.+.|.++.|..++++.+..- ..+.-++.+-+.|+....
T Consensus 242 -rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~d 318 (835)
T KOG2047|consen 242 -RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVD 318 (835)
T ss_pred -cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhh
Confidence 24553 468889999999999999999999988752 234444445555544322
Q ss_pred HHHHHHHHhhcCCC---------------CchhHHHHHHHHHhcCCHHHHHHHHhhCCC-------C--CccchHHHHHH
Q 005000 267 MGFALEIFGNIKNK---------------DVISWTAIVTGYINRGQVDMARQYFDQMPE-------R--DYVLWTAMIDG 322 (720)
Q Consensus 267 ~~~A~~~~~~~~~~---------------~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-------~--~~~~~~~li~~ 322 (720)
++-.+.-|+.+.++ ++..|..-+.. ..|+..+-...|.+... . -...|..+...
T Consensus 319 l~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~fakl 396 (835)
T KOG2047|consen 319 LELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKL 396 (835)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHH
Confidence 12222223332221 22222222221 23444444444443321 1 22368889999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHHHHc-----------CCCC------C
Q 005000 323 YLRVNRFREALTLFREMQTSNIRPD---EFTIVSILTACANLGALELGEWVKTYIDKN-----------KVKN------D 382 (720)
Q Consensus 323 ~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~-----------~~~~------~ 382 (720)
|-.+|+.+.|..+|++..+...+-- ..+|..-...=.+..+++.|..+.+.+... +.++ +
T Consensus 397 Ye~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrS 476 (835)
T KOG2047|consen 397 YENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRS 476 (835)
T ss_pred HHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHh
Confidence 9999999999999998876543211 112222222223455667777766655421 1111 2
Q ss_pred hhHhhHHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHH---HHHHHHcCChHHHHHHHHHHHHCCCCCChH-HHHHHHHH
Q 005000 383 IFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAM---IVGLAINGHGDKSLDMFSQMLRASIIPDEV-TYVGVLSA 458 (720)
Q Consensus 383 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a 458 (720)
..+|+.+++.-...|-++....+++.+.+--+.|=..+ ..-+-.+..++++.+++++-+..=-.|+.. .|+..|.-
T Consensus 477 lkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtk 556 (835)
T KOG2047|consen 477 LKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTK 556 (835)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHH
Confidence 34556666777778888888888888864322221111 222345667788998888766653345552 45544443
Q ss_pred HH---hcCChhhHHHHHHHHHHHcCCCccH--HHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHH-H
Q 005000 459 CT---HTGMVDEGREYFADMTIQHGIEPNE--AHYGCMVDLLGRAGHLNEALEVIKNM--PMKPN--SIVWGALLGAC-R 528 (720)
Q Consensus 459 ~~---~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~g~~~eA~~~~~~~--~~~p~--~~~~~~ll~~~-~ 528 (720)
+. ..-.++.|+.+|++..+ |.+|.. ..|-.....=.+.|....|++++++. ..++. ...||..|.-- .
T Consensus 557 fi~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae 634 (835)
T KOG2047|consen 557 FIKRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAE 634 (835)
T ss_pred HHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 32 34568999999999973 666643 23333334445679999999999998 34442 34677777433 3
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcc--hHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 529 VHRDAEMAEMAAKQILELDPDNEA--VYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 529 ~~g~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
.-| +.....+|+++++.-|++.. .....+++=.+.|..+.|+.++..-.+
T Consensus 635 ~yG-v~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 635 IYG-VPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred HhC-CcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 333 44567899999999887543 334567778889999999999876543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-07 Score=100.50 Aligned_cols=420 Identities=16% Similarity=0.133 Sum_probs=234.6
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHH
Q 005000 145 GFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK---DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVL 221 (720)
Q Consensus 145 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 221 (720)
.+..|..+|..|.-+...+|+++.+.+.|++... .....|+.+-..|...|.-..|+.+++.-....-.|+..+-..
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3567888999999999999999999999987544 3456799999999999999999999988665443454444333
Q ss_pred H-HHHHh-cCCCchHHHHHHHHHHHc--CC--CCChHHHHHHHHHHHhc-----------CCHHHHHHHHhhcCCC---C
Q 005000 222 V-LSACA-KLKDLDVGKRAHRYVKEC--KI--VPNLILENALTDMYAAC-----------GEMGFALEIFGNIKNK---D 281 (720)
Q Consensus 222 l-l~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~y~~~-----------g~~~~A~~~~~~~~~~---~ 281 (720)
+ -+.|. +.+..+++......++.. +. ......+-.+.-+|... ....++.+.+++..+. |
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3 34444 556777777776666652 11 11223333333333321 1123334444444321 2
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHhhCC----CCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005000 282 VISWTAIVTGYINRGQVDMARQYFDQMP----ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTA 357 (720)
Q Consensus 282 ~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 357 (720)
..+.-.+---|+-.++++.|.+..++.. ..+...|..+.-.+...+++.+|+.+.+.....- .-|..-...-+..
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHI 556 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhh
Confidence 2222222223444444444444443322 2234445555555555555555555544433320 0010000001111
Q ss_pred HhccCcHHHHHHHHHHHHHcCC-CCChhHhhHHhhhhhhcCCHHHHHHHHHhcc----C-CCHH-HHHHHHHHHHHcCCh
Q 005000 358 CANLGALELGEWVKTYIDKNKV-KNDIFVGNALIDMYCKCGDVEKAQRVFREML----R-KDKF-TWTAMIVGLAINGHG 430 (720)
Q Consensus 358 ~~~~~~~~~a~~i~~~~~~~~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~-~~~~-~~~~li~~~~~~g~~ 430 (720)
-...++.+.+......+...-- .+. ....|+-....+.+..+. + .|.. ++.-+. +... -+.
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~----------~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls-~l~a-~~~ 624 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYG----------VQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS-SLVA-SQL 624 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhh----------HhhhhhhhhhhhhhcccccCcccccccchhhHHHH-HHHH-hhh
Confidence 1112333333332222221000 000 000111112222222220 0 0111 111111 1111 000
Q ss_pred HHHHHHHHHHHHCCCC--CCh------HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCH
Q 005000 431 DKSLDMFSQMLRASII--PDE------VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP-NEAHYGCMVDLLGRAGHL 501 (720)
Q Consensus 431 ~~A~~l~~~m~~~g~~--p~~------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~ 501 (720)
..+..-.. |...-+. |+. ..|......+...+..++|...+.+.. ++.| ....|......+...|++
T Consensus 625 ~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~ 700 (799)
T KOG4162|consen 625 KSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQL 700 (799)
T ss_pred hhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhh
Confidence 00000000 1111122 232 234455567788899999988887764 3444 566777778899999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHH
Q 005000 502 NEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEM--AAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMI 577 (720)
Q Consensus 502 ~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 577 (720)
+||.+.|... .+.| ++.+..++...+...|+...|.. ++..+++++|.++.+|..|+.++.+.|+.+.|.+-|...
T Consensus 701 ~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 701 EEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 9999999887 6778 46788999999999999888888 999999999999999999999999999999999999988
Q ss_pred HhCC
Q 005000 578 LDRG 581 (720)
Q Consensus 578 ~~~~ 581 (720)
.+-.
T Consensus 781 ~qLe 784 (799)
T KOG4162|consen 781 LQLE 784 (799)
T ss_pred Hhhc
Confidence 6643
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.6e-08 Score=99.58 Aligned_cols=185 Identities=14% Similarity=0.104 Sum_probs=135.5
Q ss_pred hhhhcCCHHHHHHHHHhccCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhH
Q 005000 392 MYCKCGDVEKAQRVFREMLRK---DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEG 468 (720)
Q Consensus 392 ~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 468 (720)
.+.-+|+.-.|..-|+..+.. +...|--+...|.+..+.++....|.+..+.. +-|..+|..-.....-.+++++|
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 344578888888888877543 33336667778888889999999998888753 22445666666777777888999
Q ss_pred HHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005000 469 REYFADMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM--PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE 545 (720)
Q Consensus 469 ~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 545 (720)
..-|++.+ .+.| ++..|--+.-+..|.+++++++..|++. .++.-+..|+-....+..+++++.|.+.|+++++
T Consensus 414 ~aDF~Kai---~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 414 IADFQKAI---SLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHh---hcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 88888775 4455 3556666777778888999999999887 3433566777788888889999999999999999
Q ss_pred cCCC------CcchHHHHHhHhhh-cCChhHHHHHHHHHHhC
Q 005000 546 LDPD------NEAVYVLLCNIYAA-CNRWDNFRELRQMILDR 580 (720)
Q Consensus 546 ~~p~------~~~~~~~l~~~~~~-~g~~~~a~~~~~~m~~~ 580 (720)
++|. ++..++.-+-+..+ .+++..|.+++++..+.
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~ 532 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIEL 532 (606)
T ss_pred hccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHcc
Confidence 9988 66666654444433 37778888887777653
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.5e-08 Score=95.38 Aligned_cols=274 Identities=13% Similarity=0.106 Sum_probs=189.1
Q ss_pred cCChHHHHHHHhcCCC---CCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHH
Q 005000 163 CGEVDMARGIFDVSYK---DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH 239 (720)
Q Consensus 163 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 239 (720)
.|++..|+++..+-.+ ..+..|..-+.+--+.|+.+.+-.++.+..+.--.++...+.+..+.....|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 5888888888765333 2334555555667778888888888888876533455555666667777888888888888
Q ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCc-----------hhHHHHHHHHHhcCCHHHHHHHHhhC
Q 005000 240 RYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDV-----------ISWTAIVTGYINRGQVDMARQYFDQM 308 (720)
Q Consensus 240 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~~f~~~ 308 (720)
..+.+.+.. .+.+.......|.+.|++.....+...+.+... .+|+.++.-....+..+.-...++..
T Consensus 177 ~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 888877543 567778888888899998888888888876432 35666776666666666666677777
Q ss_pred CCC---CccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhH
Q 005000 309 PER---DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFV 385 (720)
Q Consensus 309 ~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~ 385 (720)
+.+ ++..-.+++.-+.+.|+.++|.++..+..+.+..|.-. .+-.+.+.++.+.-.+..+...+.. +.++..
T Consensus 256 pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L 330 (400)
T COG3071 256 PRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLL 330 (400)
T ss_pred cHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhC-CCChhH
Confidence 643 56667778888888899999998888888877666622 2223445555555444444333321 233466
Q ss_pred hhHHhhhhhhcCCHHHHHHHHHhcc--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005000 386 GNALIDMYCKCGDVEKAQRVFREML--RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLR 442 (720)
Q Consensus 386 ~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 442 (720)
+.+|...|.+.+.+.+|...|+... .++..+|+-+..++.+.|+..+|.+.+++...
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 7777777777777777777777653 45666777777777777777777777766554
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1e-08 Score=113.16 Aligned_cols=244 Identities=13% Similarity=0.034 Sum_probs=176.9
Q ss_pred ChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHh---------ccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcC
Q 005000 328 RFREALTLFREMQTSNIRPDE-FTIVSILTACA---------NLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCG 397 (720)
Q Consensus 328 ~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~---------~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g 397 (720)
..++|+.+|++..+. .|+. ..+..+..++. ..++++.|...+..+++.+ +.+..++..+...+...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 357888888888764 4543 33333333222 2345788888888888875 556778888888999999
Q ss_pred CHHHHHHHHHhccC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChH-HHHHHHHHHHhcCChhhHHHHHH
Q 005000 398 DVEKAQRVFREMLR--K-DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV-TYVGVLSACTHTGMVDEGREYFA 473 (720)
Q Consensus 398 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 473 (720)
++++|...|++..+ | +...|..+...+...|++++|+..+++..+. .|+.. .+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999998753 3 4668888899999999999999999999985 45432 33334555677899999999999
Q ss_pred HHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 005000 474 DMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPNS-IVWGALLGACRVHRDAEMAEMAAKQILELDPDN 550 (720)
Q Consensus 474 ~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 550 (720)
++... ..| ++..+..+...|...|++++|.+.++++ +..|+. ..++.+...+...| +.|...++++++..-..
T Consensus 431 ~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 87632 234 4556777888999999999999999987 445543 44555556667777 47888788877653332
Q ss_pred cchHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 551 EAVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 551 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
+.....+..+|+-.|+-+.+..+ +++.+.+
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 23333477888888988888877 7776654
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3e-08 Score=94.14 Aligned_cols=305 Identities=13% Similarity=0.154 Sum_probs=135.0
Q ss_pred CCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhH-------HHHHHHHHhcCCHHHHH
Q 005000 230 KDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISW-------TAIVTGYINRGQVDMAR 302 (720)
Q Consensus 230 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~-------~~li~~~~~~g~~~~A~ 302 (720)
.+.+.|...|-+|.+.. +.+..+.-+|.+.|-+.|..+.|+++-..+.++...|+ ..|..-|...|-++.|+
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 45556666666665532 22334444555666666666666666655444222222 22333344444445555
Q ss_pred HHHhhCCCCCcc---chHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC
Q 005000 303 QYFDQMPERDYV---LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKV 379 (720)
Q Consensus 303 ~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~ 379 (720)
.+|..+.+.... +...|+..|-+..+|++|++.-+++.+.+-.+..+-.
T Consensus 128 ~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI---------------------------- 179 (389)
T COG2956 128 DIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI---------------------------- 179 (389)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH----------------------------
Confidence 544444442222 2233444444444444444444444443322221110
Q ss_pred CCChhHhhHHhhhhhhcCCHHHHHHHHHhccCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHH
Q 005000 380 KNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDK---FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVL 456 (720)
Q Consensus 380 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 456 (720)
...|.-|...+....+++.|...+.+..+.|. ..--.+...+...|+++.|++.++...+.+..--..+...|.
T Consensus 180 ---AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~ 256 (389)
T COG2956 180 ---AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLY 256 (389)
T ss_pred ---HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 11222333333334445555555554432221 111222344455555555555555555543222223444455
Q ss_pred HHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHH
Q 005000 457 SACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIK-NMPMKPNSIVWGALLGACRVHRDAEM 535 (720)
Q Consensus 457 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~-~~~~~p~~~~~~~ll~~~~~~g~~~~ 535 (720)
.+|.+.|+.+++...+..+.+ ..+....-..+.+......-.+.|...+. .+.-+|+...+..|+..-...
T Consensus 257 ~~Y~~lg~~~~~~~fL~~~~~---~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~d----- 328 (389)
T COG2956 257 ECYAQLGKPAEGLNFLRRAME---TNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLAD----- 328 (389)
T ss_pred HHHHHhCCHHHHHHHHHHHHH---ccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhcc-----
Confidence 555555655555555555431 12222222333333333333333333322 223344444443333321110
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCCCccCCcccEEEECCEEEEE
Q 005000 536 AEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEF 600 (720)
Q Consensus 536 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~ 600 (720)
+.-|++.+..-+++.|....++..|.+.....+-..|.|
T Consensus 329 --------------------------aeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l 367 (389)
T COG2956 329 --------------------------AEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTL 367 (389)
T ss_pred --------------------------ccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceee
Confidence 123556667777777777777666655444444344443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.8e-08 Score=94.39 Aligned_cols=243 Identities=12% Similarity=0.129 Sum_probs=127.8
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC---hhHhhHHhhhhhhcCCHHHH
Q 005000 326 VNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKND---IFVGNALIDMYCKCGDVEKA 402 (720)
Q Consensus 326 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~---~~~~~~li~~y~~~g~~~~A 402 (720)
+++.++|.++|-+|.+.. +-+..+-.++-+.+.+.|..+.|..+|+-+.++.--+. ..+.-.|..-|.+.|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 345555666665555421 11222233344445555666666666655554311110 12233455556666666666
Q ss_pred HHHHHhccCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChH----HHHHHHHHHHhcCChhhHHHHHHHH
Q 005000 403 QRVFREMLRKDK---FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV----TYVGVLSACTHTGMVDEGREYFADM 475 (720)
Q Consensus 403 ~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m 475 (720)
+.+|..+.+.+. .....++..|-+..++++|++.-+++...+-++..+ .|.-+........+++.|..++++.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 666666655332 234445666666666666666666666655444432 3444555555566666666666655
Q ss_pred HHHcCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 005000 476 TIQHGIEPN-EAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN--SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551 (720)
Q Consensus 476 ~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 551 (720)
.. ..|+ +..--.+.+.+...|+++.|.+.++.. .-.|+ +.+...|..+|.+.|+.+++...+.++.+..+..
T Consensus 207 lq---a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~- 282 (389)
T COG2956 207 LQ---ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA- 282 (389)
T ss_pred Hh---hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc-
Confidence 42 1222 222334556666666666666666665 23343 2345566666666677666666666666665543
Q ss_pred chHHHHHhHhhhcCChhHHHHH
Q 005000 552 AVYVLLCNIYAACNRWDNFREL 573 (720)
Q Consensus 552 ~~~~~l~~~~~~~g~~~~a~~~ 573 (720)
..-..+...-....-.+.|...
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~ 304 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAY 304 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHH
Confidence 3334444444444444444443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.9e-07 Score=88.41 Aligned_cols=435 Identities=14% Similarity=0.096 Sum_probs=243.0
Q ss_pred CChHHHHHHhccCC------CCCcchHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCChHHHHH
Q 005000 63 GDMKYACKVFRKIP------RPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKE 136 (720)
Q Consensus 63 g~~~~A~~~f~~~~------~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 136 (720)
.++..|..+++--. +.++..| +.-++.+.|++++|+..|.-+.++. .|+......+.-+..-.|.+.+|++
T Consensus 36 rDytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred ccchhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHH
Confidence 45556665553211 1233334 3346678899999999998887754 3555555555555556778888877
Q ss_pred HHHHHHHhCCCCChhHHHHHH-HHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 005000 137 LHCHVLKFGFDSSVFVQNALI-STYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPT 215 (720)
Q Consensus 137 ~~~~~~~~g~~~~~~~~~~li-~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 215 (720)
+-... |+....+.|+ +.-.+.++-.+-..+-+.+.. ...---++.+.....-.+.+|++++...... .|+
T Consensus 113 ~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD-~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~e 183 (557)
T KOG3785|consen 113 IAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-TLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPE 183 (557)
T ss_pred HHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--Chh
Confidence 65543 4444444444 555555655544444333322 1122233444444555788999999988765 344
Q ss_pred HhhHHHHHHH-HhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHh--cCCHHHHHHHHhhcCCCCchhHHHHHHHH
Q 005000 216 SVTIVLVLSA-CAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAA--CGEMGFALEIFGNIKNKDVISWTAIVTGY 292 (720)
Q Consensus 216 ~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~--~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 292 (720)
-...+.-+.. |.+..-++.+.++++..++. ++.+....|.......+ .|+..++ -..++-+ |...--..+.-+
T Consensus 184 y~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~--E~k~lad-N~~~~~~f~~~l 259 (557)
T KOG3785|consen 184 YIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAED--EKKELAD-NIDQEYPFIEYL 259 (557)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHH--HHHHHHh-cccccchhHHHH
Confidence 4444444443 45777788888888877765 33344455544433333 2332221 1111111 111111122222
Q ss_pred HhcC-----CHHHHHHHHhhCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-----ccC
Q 005000 293 INRG-----QVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACA-----NLG 362 (720)
Q Consensus 293 ~~~g-----~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-----~~~ 362 (720)
++.+ .-+.|.+++-.+.+.=+.+--.++--|.++++..+|..+.+++.- ..|-.+....+..+.. ...
T Consensus 260 ~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSre 337 (557)
T KOG3785|consen 260 CRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSRE 337 (557)
T ss_pred HHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHH
Confidence 2221 224555555444443344444566668888999999888776642 3454444444443321 122
Q ss_pred cHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005000 363 ALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLR 442 (720)
Q Consensus 363 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 442 (720)
.+..|.+.++.+-.++...|... |+ .+|.+.+.-..++++.+-.+.....
T Consensus 338 HlKiAqqffqlVG~Sa~ecDTIp-----------GR-------------------QsmAs~fFL~~qFddVl~YlnSi~s 387 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGESALECDTIP-----------GR-------------------QSMASYFFLSFQFDDVLTYLNSIES 387 (557)
T ss_pred HHHHHHHHHHHhccccccccccc-----------ch-------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666655555444322 11 1222233333344444444444443
Q ss_pred CCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCC-ccHHHHH-HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHH
Q 005000 443 ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIE-PNEAHYG-CMVDLLGRAGHLNEALEVIKNMPMKPNSIVW 520 (720)
Q Consensus 443 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-p~~~~~~-~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~ 520 (720)
.=..-|...| .+..|.+..|++.+|.++|-.+. |.+ .|..+|. .|...|.++++++-|.+++-++.-..+..+.
T Consensus 388 YF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is---~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsL 463 (557)
T KOG3785|consen 388 YFTNDDDFNL-NLAQAKLATGNYVEAEELFIRIS---GPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSL 463 (557)
T ss_pred HhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhc---ChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHH
Confidence 3222233333 47778888888888888887663 322 3445554 4557788999999999998888544456665
Q ss_pred HHHH-HHHHhcCCHHHHHHHHHHHHhcCCC
Q 005000 521 GALL-GACRVHRDAEMAEMAAKQILELDPD 549 (720)
Q Consensus 521 ~~ll-~~~~~~g~~~~a~~~~~~~~~~~p~ 549 (720)
..++ .-|.+.+.+--|-++|..+..++|.
T Consensus 464 LqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 464 LQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 5555 5688989888888888888888875
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.7e-09 Score=100.10 Aligned_cols=228 Identities=15% Similarity=0.091 Sum_probs=146.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhc
Q 005000 317 TAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKC 396 (720)
Q Consensus 317 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~ 396 (720)
+.|..+|.+.|.+.+|.+-|+.-... .|-..||..+-.+|.+..+.+.|..++..-++. ++.++....-....+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 45677777778888887777776664 344455656666666666666666666555543 233333334444555555
Q ss_pred CCHHHHHHHHHhccCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHH
Q 005000 397 GDVEKAQRVFREMLRK---DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFA 473 (720)
Q Consensus 397 g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 473 (720)
++.++|.++++...+. ++.+...+..+|.-.++++-|+..++++++.|+. +...|+.+.-+|...+++|-+..-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 5555555555555332 3334444445555555555555555555555543 34444545555555555555554444
Q ss_pred HHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 005000 474 DMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKP--NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551 (720)
Q Consensus 474 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 551 (720)
+... . .-.| -..+|..+.......||+..|.+.++-++..+|++.
T Consensus 383 RAls-t--------------------------------at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ 429 (478)
T KOG1129|consen 383 RALS-T--------------------------------ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG 429 (478)
T ss_pred HHHh-h--------------------------------ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchH
Confidence 4321 0 1122 356788888888889999999999999999999999
Q ss_pred chHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 552 AVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 552 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
.+++.|+-+-.+.|++++|+.++.......
T Consensus 430 ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 430 EALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 999999999999999999999999887643
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.9e-07 Score=87.30 Aligned_cols=267 Identities=9% Similarity=-0.034 Sum_probs=181.1
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccchHH---HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005000 280 KDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTA---MIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILT 356 (720)
Q Consensus 280 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 356 (720)
.|+.....+.+.+...|+.++|+..|++..--|+.+... ..-.+.+.|++++...+...+.... +-....+..-..
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~ 308 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQ 308 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhh
Confidence 467777788888888888888888888766555443332 2334567788888877777766432 111111111122
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhcc--C-CCHHHHHHHHHHHHHcCChHHH
Q 005000 357 ACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML--R-KDKFTWTAMIVGLAINGHGDKS 433 (720)
Q Consensus 357 ~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A 433 (720)
..-...+++.|..+-...++.. +.+...+-.-...+...|++++|.-.|+... . -+..+|..++..|...|...+|
T Consensus 309 ~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA 387 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEA 387 (564)
T ss_pred hhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHH
Confidence 2234456666666666666544 2333444334456667889999988888764 3 3788999999999999999999
Q ss_pred HHHHHHHHHCCCCCChHHHHHHH-HHHHh-cCChhhHHHHHHHHHHHcCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 005000 434 LDMFSQMLRASIIPDEVTYVGVL-SACTH-TGMVDEGREYFADMTIQHGIEPN-EAHYGCMVDLLGRAGHLNEALEVIKN 510 (720)
Q Consensus 434 ~~l~~~m~~~g~~p~~~t~~~ll-~a~~~-~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~ 510 (720)
.-+-+..... +..+..+...+. ..|.. ...-++|.+++++.. .+.|+ ....+.+..++.+.|+.+++..++++
T Consensus 388 ~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 388 NALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 8887776553 333445554442 33332 233467888887653 45564 45566777888899999999999988
Q ss_pred C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 005000 511 M-PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA 552 (720)
Q Consensus 511 ~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 552 (720)
. ...||....+.|....+..+.+.+|...|..++.++|++..
T Consensus 464 ~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 464 HLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred HHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence 6 56788888999999999999999999999999999998743
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2e-08 Score=101.33 Aligned_cols=211 Identities=15% Similarity=0.081 Sum_probs=148.3
Q ss_pred CcHHHHHHHHHHHHHcC-CCC--ChhHhhHHhhhhhhcCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHH
Q 005000 362 GALELGEWVKTYIDKNK-VKN--DIFVGNALIDMYCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLD 435 (720)
Q Consensus 362 ~~~~~a~~i~~~~~~~~-~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 435 (720)
+..+.+..-+..++... ..| ....+..+...|.+.|+.++|...|++..+ .+...|+.+...+...|++++|++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34455555565665432 222 245677788889999999999999998753 367899999999999999999999
Q ss_pred HHHHHHHCCCCCCh-HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC--C
Q 005000 436 MFSQMLRASIIPDE-VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM--P 512 (720)
Q Consensus 436 l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~--~ 512 (720)
.|++.++. .|+. .++..+..++...|++++|.+.|+...+ ..|+..........+...+++++|.+.+++. .
T Consensus 120 ~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 99999874 5654 6777788888899999999999998863 3454332222233445678899999999664 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 513 MKPNSIVWGALLGACRVHRDAEMAEMAAKQIL-------ELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 513 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
..|+...| . ......|+...+ ..++.+. ++.|+.+.+|..++.+|.+.|++++|...+++..+.+
T Consensus 195 ~~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 LDKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 23333222 2 222234444333 2333333 4556677899999999999999999999999987654
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.9e-07 Score=98.27 Aligned_cols=247 Identities=14% Similarity=0.151 Sum_probs=129.8
Q ss_pred hhHHHHHHHHhcCCCchHHHHHHHHHHHc-----CC-CCChH-HHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHH
Q 005000 217 VTIVLVLSACAKLKDLDVGKRAHRYVKEC-----KI-VPNLI-LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIV 289 (720)
Q Consensus 217 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g~-~~~~~-~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li 289 (720)
.|...+...|...|+++.|..+++..++. |. .|.+. ..+.+...|...+++.+|..+|++
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~------------- 266 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEE------------- 266 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHH-------------
Confidence 45555666777777777777777766553 21 11221 222345566666666666666553
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCC----ccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH
Q 005000 290 TGYINRGQVDMARQYFDQMPERD----YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALE 365 (720)
Q Consensus 290 ~~~~~~g~~~~A~~~f~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 365 (720)
|..+++....++ ..+++.|...|.+.|++++|...+++..+-
T Consensus 267 -----------AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I----------------------- 312 (508)
T KOG1840|consen 267 -----------ALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI----------------------- 312 (508)
T ss_pred -----------HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH-----------------------
Confidence 233333322221 235666667777777777777776665431
Q ss_pred HHHHHHHHHHHcC-CCCC-hhHhhHHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 005000 366 LGEWVKTYIDKNK-VKND-IFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRA 443 (720)
Q Consensus 366 ~a~~i~~~~~~~~-~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 443 (720)
... ..+ ..+. ...++.+...+...+++++|..++... ++++..
T Consensus 313 -----~~~--~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a------------------------l~i~~~---- 357 (508)
T KOG1840|consen 313 -----YEK--LLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKA------------------------LKIYLD---- 357 (508)
T ss_pred -----HHH--hhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHH------------------------HHHHHh----
Confidence 000 000 0000 112233444444555555555554422 111110
Q ss_pred CCCCCh----HHHHHHHHHHHhcCChhhHHHHHHHHHHHc----C-CCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC--
Q 005000 444 SIIPDE----VTYVGVLSACTHTGMVDEGREYFADMTIQH----G-IEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM-- 511 (720)
Q Consensus 444 g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~-~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-- 511 (720)
-+.++. -+++.+...+.+.|++++|.++|+++.... + ..+ ....++.|...|.+.++.++|.++|.+.
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 011111 245555555555555555555555544221 1 111 1334555666666666666666665554
Q ss_pred ------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005000 512 ------PMKPN-SIVWGALLGACRVHRDAEMAEMAAKQILE 545 (720)
Q Consensus 512 ------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 545 (720)
+..|+ ..+|..|...|...|+++.|+++.++++.
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 23344 45788999999999999999999888874
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.05 E-value=8e-08 Score=93.75 Aligned_cols=197 Identities=16% Similarity=0.147 Sum_probs=112.7
Q ss_pred ccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhh
Q 005000 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDM 392 (720)
Q Consensus 313 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 392 (720)
...+..+...+...|++++|...+++..+.. +.+... +..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~-----------------------------------~~~la~~ 74 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLA-----------------------------------YLALALY 74 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHH-----------------------------------HHHHHHH
Confidence 3456667777777777777777777776542 122333 3344444
Q ss_pred hhhcCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCChhhH
Q 005000 393 YCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD-EVTYVGVLSACTHTGMVDEG 468 (720)
Q Consensus 393 y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 468 (720)
|...|++++|.+.|++..+ .+...+..+...+...|++++|.+.|++.......|. ...+..+...+...|++++|
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 154 (234)
T TIGR02521 75 YQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKA 154 (234)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHH
Confidence 4555555555555544421 2334455555555666666666666666655322222 23444455566666777777
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005000 469 REYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILEL 546 (720)
Q Consensus 469 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (720)
...+.+.... .+.+...+..+...+...|++++|.+.+++. ...| +...+..+...+...|+.+.|....+.+.+.
T Consensus 155 ~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 155 EKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 7777666521 1223455666667777777777777776665 2222 4455556666667777777777776666554
Q ss_pred C
Q 005000 547 D 547 (720)
Q Consensus 547 ~ 547 (720)
.
T Consensus 233 ~ 233 (234)
T TIGR02521 233 F 233 (234)
T ss_pred C
Confidence 3
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.2e-06 Score=84.26 Aligned_cols=294 Identities=14% Similarity=0.059 Sum_probs=209.0
Q ss_pred cCCHHHHHHHHhhCC-----CCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH----HHHHHHHHhccCcHH
Q 005000 295 RGQVDMARQYFDQMP-----ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFT----IVSILTACANLGALE 365 (720)
Q Consensus 295 ~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~~~~~~~~~~ 365 (720)
.++...|...|-.+. ..|+.....+...+...|+.++|+..|++.+-. .|+..+ |..+ +.+.|+.+
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~L---L~~eg~~e 283 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVL---LGQEGGCE 283 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHH---HHhccCHh
Confidence 444445544443332 347778889999999999999999999988753 454433 2222 34567777
Q ss_pred HHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHH---HHHHHcCChHHHHHHHHHHHH
Q 005000 366 LGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMI---VGLAINGHGDKSLDMFSQMLR 442 (720)
Q Consensus 366 ~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~ 442 (720)
....+...+.... +.+...|-.-........+++.|+.+-++.++-|.....++| ..+.+.|++++|.-.|+..+.
T Consensus 284 ~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 284 QDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM 362 (564)
T ss_pred hHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh
Confidence 7776666655432 111122222223334456888888888887765554444443 678889999999999999887
Q ss_pred CCCCC-ChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHH-HHHH-hcCCHHHHHHHHHhC-CCCCC-H
Q 005000 443 ASIIP-DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV-DLLG-RAGHLNEALEVIKNM-PMKPN-S 517 (720)
Q Consensus 443 ~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li-~~~~-~~g~~~eA~~~~~~~-~~~p~-~ 517 (720)
. .| +-..|..|+..|...|.+.+|.-.-....+ -+..+..+.+.+. +.+. ....-++|.+++++. .++|+ .
T Consensus 363 L--ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~ 438 (564)
T KOG1174|consen 363 L--APYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYT 438 (564)
T ss_pred c--chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccH
Confidence 4 54 457999999999999999999877766542 2334555555442 2222 233457899999886 67886 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCCCccCCcccEEEECCEE
Q 005000 518 IVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVV 597 (720)
Q Consensus 518 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~ 597 (720)
...+.+...|...|..+.++.++++.+...|++ ..++.|++++...+.+.+|.+.+.....
T Consensus 439 ~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr------------------ 499 (564)
T KOG1174|consen 439 PAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALR------------------ 499 (564)
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHh------------------
Confidence 566778888999999999999999999999985 7889999999999999999999887764
Q ss_pred EEEEeCCCCCcCcHHHHHHHHHHHHHHH
Q 005000 598 HEFVAGDKSHPQTKEIYLKLDEMTSDLK 625 (720)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 625 (720)
..|+.+....-++.|..+++
T Consensus 500 --------~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 500 --------QDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred --------cCccchHHHHHHHHHHhccC
Confidence 35677778888887776666
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.5e-08 Score=108.02 Aligned_cols=211 Identities=13% Similarity=0.004 Sum_probs=162.9
Q ss_pred CcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhh---------hcCCHHHHHHHHHhccCC---CHHHHHHHHHHHHHcCC
Q 005000 362 GALELGEWVKTYIDKNKVKNDIFVGNALIDMYC---------KCGDVEKAQRVFREMLRK---DKFTWTAMIVGLAINGH 429 (720)
Q Consensus 362 ~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~---------~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~ 429 (720)
++++.|...+..+++.. +.+...+..+..+|. ..+++++|...+++..+. +...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 45678888898888764 334555666655544 334589999999988543 67788888889999999
Q ss_pred hHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccH-HHHHHHHHHHHhcCCHHHHHHH
Q 005000 430 GDKSLDMFSQMLRASIIPDE-VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNE-AHYGCMVDLLGRAGHLNEALEV 507 (720)
Q Consensus 430 ~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~eA~~~ 507 (720)
+++|+..|++..+. .|+. ..+..+..++...|++++|...++++. .+.|+. ..+..+...+...|++++|.+.
T Consensus 354 ~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al---~l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECL---KLDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 99999999999986 4554 567778888999999999999999986 334543 2333445557778999999999
Q ss_pred HHhCC--CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 508 IKNMP--MKPN-SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 508 ~~~~~--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
+++.- ..|+ +..+..+..++...|+.++|...++++....|++......++..|...| ++|...++.+.+.
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 98872 2354 4556777788889999999999999998888988888888888888888 4788877776553
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.4e-06 Score=91.24 Aligned_cols=460 Identities=13% Similarity=0.104 Sum_probs=269.6
Q ss_pred HHhcccccccCChHHHHHHhcc--CCCCCcchHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCC
Q 005000 53 KLVTFCCSEKGDMKYACKVFRK--IPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIA 130 (720)
Q Consensus 53 ~ll~~~y~~~g~~~~A~~~f~~--~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 130 (720)
+-|+. |.|.|.+..|.+.-.. -...|......+-.++.+..-++.|-++|+.+.. |...+..+.+-..
T Consensus 620 aaiql-yika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgda 689 (1636)
T KOG3616|consen 620 AAIQL-YIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDA 689 (1636)
T ss_pred HHHHH-HHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccH
Confidence 34555 6666666666554421 1123444444555555555556666666665532 2223333333333
Q ss_pred hHHHHHHHHHHHHhCCCCChhH-HHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHH
Q 005000 131 VEFGKELHCHVLKFGFDSSVFV-QNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMER 209 (720)
Q Consensus 131 ~~~a~~~~~~~~~~g~~~~~~~-~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 209 (720)
+..|.++-+.. ++..++. -..-...+...|+++.|..-|-+.. ..-..|.+-.....|.+|+.+++.++.
T Consensus 690 f~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~-----~~~kaieaai~akew~kai~ildniqd 760 (1636)
T KOG3616|consen 690 FGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQD 760 (1636)
T ss_pred HHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhh
Confidence 44444433322 2222221 1223344455677777777664321 112234566778899999999998887
Q ss_pred CCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCC--chhHHH
Q 005000 210 KGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKD--VISWTA 287 (720)
Q Consensus 210 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~--~~~~~~ 287 (720)
... -.--|..+...|+..|+++.|.++|.+. ..++-.|+||.+.|++++|.++-++...|. +.+|-+
T Consensus 761 qk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yia 829 (1636)
T KOG3616|consen 761 QKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIA 829 (1636)
T ss_pred hcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHH
Confidence 643 3345777888999999999999998632 345667999999999999999999887764 455666
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 005000 288 IVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG 367 (720)
Q Consensus 288 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 367 (720)
-..-+-+.|++.+|++++-.+..|+. .|..|-+.|..+..+++..+-.... -..|...+..-+...|++..|
T Consensus 830 kaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d~---l~dt~~~f~~e~e~~g~lkaa 901 (1636)
T KOG3616|consen 830 KAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGDH---LHDTHKHFAKELEAEGDLKAA 901 (1636)
T ss_pred hHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChhh---hhHHHHHHHHHHHhccChhHH
Confidence 66778899999999999998888864 5788999999999998877543211 133555566667778888888
Q ss_pred HHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCCC-----HHHHHHH------HHHHHHcCChHHHHH-
Q 005000 368 EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKD-----KFTWTAM------IVGLAINGHGDKSLD- 435 (720)
Q Consensus 368 ~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-----~~~~~~l------i~~~~~~g~~~~A~~- 435 (720)
..-+-.+.+ |.+-++||-..+.+++|.++-+.--..| ...|..- +..+-++|..++|+.
T Consensus 902 e~~flea~d---------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~ 972 (1636)
T KOG3616|consen 902 EEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDF 972 (1636)
T ss_pred HHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhh
Confidence 766544332 6678899999999999998876543222 2233221 222333444443333
Q ss_pred ------------HHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHH--------------
Q 005000 436 ------------MFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYG-------------- 489 (720)
Q Consensus 436 ------------l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-------------- 489 (720)
+-+-..+.. .|.. ...+..-+...|++++|-+-+-+..+ . ..-..+|.
T Consensus 973 a~d~~afd~afdlari~~k~k-~~~v--hlk~a~~ledegk~edaskhyveaik-l--ntynitwcqavpsrfd~e~ir~ 1046 (1636)
T KOG3616|consen 973 AADNCAFDFAFDLARIAAKDK-MGEV--HLKLAMFLEDEGKFEDASKHYVEAIK-L--NTYNITWCQAVPSRFDAEFIRA 1046 (1636)
T ss_pred hhcccchhhHHHHHHHhhhcc-Cccc--hhHHhhhhhhccchhhhhHhhHHHhh-c--ccccchhhhcccchhhHHHHHc
Confidence 222222211 1221 12233345567888888766655432 1 11111111
Q ss_pred -----HHHHHHHhcCCHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhh
Q 005000 490 -----CMVDLLGRAGHLNEALEVIKNMPMKPN--SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYA 562 (720)
Q Consensus 490 -----~li~~~~~~g~~~eA~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 562 (720)
.-+.++.+.++|..|.++-+.-- || +.++..-..+....|++-+|+-++-++ ..|+- ..+-|.
T Consensus 1047 gnkpe~av~mfi~dndwa~aervae~h~--~~~l~dv~tgqar~aiee~d~~kae~fllra--nkp~i------~l~yf~ 1116 (1636)
T KOG3616|consen 1047 GNKPEEAVEMFIHDNDWAAAERVAEAHC--EDLLADVLTGQARGAIEEGDFLKAEGFLLRA--NKPDI------ALNYFI 1116 (1636)
T ss_pred CCChHHHHHHhhhcccHHHHHHHHHhhC--hhhhHHHHhhhhhccccccchhhhhhheeec--CCCch------HHHHHH
Confidence 12344555555555555544431 22 123333334444556666665544222 23432 345567
Q ss_pred hcCChhHHHHHHH
Q 005000 563 ACNRWDNFRELRQ 575 (720)
Q Consensus 563 ~~g~~~~a~~~~~ 575 (720)
..+.|.+|.++-+
T Consensus 1117 e~~lw~dalri~k 1129 (1636)
T KOG3616|consen 1117 EAELWPDALRIAK 1129 (1636)
T ss_pred HhccChHHHHHHH
Confidence 7888888887643
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.4e-07 Score=92.40 Aligned_cols=218 Identities=13% Similarity=0.196 Sum_probs=117.4
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHH
Q 005000 322 GYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEK 401 (720)
Q Consensus 322 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 401 (720)
.+.+.|+++.|+..|-+... ....+.+......+..|..++..+...... ..-|..+.+-|+..|+++-
T Consensus 715 hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ 783 (1636)
T KOG3616|consen 715 HLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEI 783 (1636)
T ss_pred HHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHH
Confidence 34445555555555543321 122334444555666666666655554322 2234556666777777777
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCC
Q 005000 402 AQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGI 481 (720)
Q Consensus 402 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 481 (720)
|.++|-+.. .++-.|..|.+.|+++.|.++-.+.. |.......|.+-..-.-..|++.+|.+++-.+.
T Consensus 784 ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----- 851 (1636)
T KOG3616|consen 784 AEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----- 851 (1636)
T ss_pred HHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----
Confidence 777665542 23445566667777777666654432 222223344444444556666666666664331
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHh
Q 005000 482 EPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIY 561 (720)
Q Consensus 482 ~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 561 (720)
.|+. -|.+|-+.|..++.+++.++-.-..-..|...+..-+...|+...|+.-|-++ .-+..-.++|
T Consensus 852 ~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea--------~d~kaavnmy 918 (1636)
T KOG3616|consen 852 EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA--------GDFKAAVNMY 918 (1636)
T ss_pred CchH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhh--------hhHHHHHHHh
Confidence 3443 35567777777777766666421112334455555566666666666555433 2344456666
Q ss_pred hhcCChhHHHHHHH
Q 005000 562 AACNRWDNFRELRQ 575 (720)
Q Consensus 562 ~~~g~~~~a~~~~~ 575 (720)
...+.|++|.++-+
T Consensus 919 k~s~lw~dayriak 932 (1636)
T KOG3616|consen 919 KASELWEDAYRIAK 932 (1636)
T ss_pred hhhhhHHHHHHHHh
Confidence 66677776666543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.00 E-value=7e-06 Score=89.10 Aligned_cols=494 Identities=13% Similarity=0.173 Sum_probs=299.1
Q ss_pred hhHHhcccccccCChHHHHHHhccCCC--CCcchHHH----HHHHHHcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHH
Q 005000 51 QNKLVTFCCSEKGDMKYACKVFRKIPR--PSVCLWNT----MIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKG 124 (720)
Q Consensus 51 ~~~ll~~~y~~~g~~~~A~~~f~~~~~--~~~~~~n~----li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 124 (720)
+-.+-+. |.+.|-+..|++.|..+.. +.++.-+. -+..|.-.-.++++++.++.|+..+++-|-.+...+..-
T Consensus 609 ra~IAqL-CEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatk 687 (1666)
T KOG0985|consen 609 RAEIAQL-CEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATK 687 (1666)
T ss_pred HHHHHHH-HHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3445556 7788888888888877653 22222111 123344445678899999999988887776666555555
Q ss_pred HhccCChHHHHHHHHHHHHh-----------CCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC---------------
Q 005000 125 FTRDIAVEFGKELHCHVLKF-----------GFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK--------------- 178 (720)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~-----------g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--------------- 178 (720)
|...-..+...++|+..... .+..|+.+.-..|.+-++.|++.+.+++.++-.-
T Consensus 688 y~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL 767 (1666)
T KOG0985|consen 688 YHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKL 767 (1666)
T ss_pred HHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccc
Confidence 55444445555555544321 3566777888899999999999999888764210
Q ss_pred ----C------------CeeeH------HHHHHHHHhCCChhHHHHHHHHH---------------HHCCCCCCHhhHHH
Q 005000 179 ----D------------DVVTW------NAMFSGYKRVKQFDETRKLFGEM---------------ERKGVLPTSVTIVL 221 (720)
Q Consensus 179 ----~------------~~~~~------~~li~~~~~~g~~~~A~~l~~~m---------------~~~g~~p~~~t~~~ 221 (720)
| |.+.| -..|..|++.=++...-.+...+ .-.|..| ..-
T Consensus 768 ~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~----~de 843 (1666)
T KOG0985|consen 768 TDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFP----VDE 843 (1666)
T ss_pred cccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCC----hHH
Confidence 1 11111 12345565543333222222111 1123333 345
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHH-H---HHhh------cCCCCc---------
Q 005000 222 VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFAL-E---IFGN------IKNKDV--------- 282 (720)
Q Consensus 222 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~-~---~~~~------~~~~~~--------- 282 (720)
+..-+-+..++..-...++..+..|.. |..++|+|...|...++-.+-. + .|+. ..++|+
T Consensus 844 Lv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYer 922 (1666)
T KOG0985|consen 844 LVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYER 922 (1666)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecc
Confidence 666777888888888899999998866 8899999999887765433211 0 0110 011111
Q ss_pred --------------hhHHHHHHHHHhcCCHHHHHHHHhhC----------------C-CCCccchHHHHHHHHhcCChhH
Q 005000 283 --------------ISWTAIVTGYINRGQVDMARQYFDQM----------------P-ERDYVLWTAMIDGYLRVNRFRE 331 (720)
Q Consensus 283 --------------~~~~~li~~~~~~g~~~~A~~~f~~~----------------~-~~~~~~~~~li~~~~~~g~~~~ 331 (720)
..+-...+-+.+..+.+--.+++.+- + ..|+..-+.-+.++...+-+.+
T Consensus 923 GqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~e 1002 (1666)
T KOG0985|consen 923 GQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNE 1002 (1666)
T ss_pred cCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHH
Confidence 01122222233444444333333211 1 1255566677788888888888
Q ss_pred HHHHHHHHHHCCCC--CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC-----------------------CCCChhHh
Q 005000 332 ALTLFREMQTSNIR--PDEFTIVSILTACANLGALELGEWVKTYIDKNK-----------------------VKNDIFVG 386 (720)
Q Consensus 332 A~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~-----------------------~~~~~~~~ 386 (720)
-++++++..-.+-. -+...-+.++-...+ .+.....++...+-..+ +..+....
T Consensus 1003 LIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~ 1081 (1666)
T KOG0985|consen 1003 LIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAI 1081 (1666)
T ss_pred HHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHH
Confidence 88888887643211 111111112111111 11122222222211111 11111222
Q ss_pred hHHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChh
Q 005000 387 NALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVD 466 (720)
Q Consensus 387 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 466 (720)
+.|++ ..++++.|.+.-++.. .+..|..+..+-.+.|...+|++-|-+. -|...|.-++.++++.|.++
T Consensus 1082 ~VLie---~i~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~e 1150 (1666)
T KOG0985|consen 1082 QVLIE---NIGSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYE 1150 (1666)
T ss_pred HHHHH---HhhhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHH
Confidence 22221 1233333333333332 4567999999999999999998877542 35678999999999999999
Q ss_pred hHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005000 467 EGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILEL 546 (720)
Q Consensus 467 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (720)
+-.+++...+ +..-+|.++ +.|+-+|++.+++.|-++++. .||..-...+..-|...|.++.|.-+|..
T Consensus 1151 dLv~yL~MaR-kk~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---- 1219 (1666)
T KOG0985|consen 1151 DLVKYLLMAR-KKVREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN---- 1219 (1666)
T ss_pred HHHHHHHHHH-HhhcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH----
Confidence 9999998775 556677765 458999999999999888874 47888888999999999999999888764
Q ss_pred CCCCcchHHHHHhHhhhcCChhHHHHHHHHH
Q 005000 547 DPDNEAVYVLLCNIYAACNRWDNFRELRQMI 577 (720)
Q Consensus 547 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 577 (720)
.+.|..|+..+...|.+..|...-++.
T Consensus 1220 ----vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1220 ----VSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred ----hhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 467788888888888888877654443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.3e-05 Score=81.77 Aligned_cols=122 Identities=12% Similarity=0.013 Sum_probs=64.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHcCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHH
Q 005000 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPN-EAHYGCMVDLLGRAGHLNEALEVIKNM-PMK-PNSIVWGALLGACR 528 (720)
Q Consensus 452 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~-p~~~~~~~ll~~~~ 528 (720)
+..+...+-+.|+++.|..+++... +..|+ ++.|-.=..++..+|.+++|..++++. +++ ||...-.--..-..
T Consensus 374 ~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmL 450 (700)
T KOG1156|consen 374 LYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYML 450 (700)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 3344555666677777777766554 34454 344444456666677777777777665 222 33333223333444
Q ss_pred hcCCHHHHHHHHHHHHhcCCCC---------cchHHHHHhHhhhcCChhHHHHHHHH
Q 005000 529 VHRDAEMAEMAAKQILELDPDN---------EAVYVLLCNIYAACNRWDNFRELRQM 576 (720)
Q Consensus 529 ~~g~~~~a~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~a~~~~~~ 576 (720)
+.++.++|.+++.+..+.+-+- .....-=+.+|.++|+|.+|.+-+..
T Consensus 451 rAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~ 507 (700)
T KOG1156|consen 451 RANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHE 507 (700)
T ss_pred HccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhh
Confidence 5566666666666655433210 01111224556667777666654433
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.97 E-value=5e-08 Score=88.65 Aligned_cols=161 Identities=17% Similarity=0.142 Sum_probs=139.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCc-cHHHHHHHHHH
Q 005000 417 WTAMIVGLAINGHGDKSLDMFSQMLRASIIPDE-VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP-NEAHYGCMVDL 494 (720)
Q Consensus 417 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~ 494 (720)
...+.-+|.+.|+...|..-+++.++. .|+. .++..+...|.+.|..+.|.+.|+... .+.| +..+.|....-
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhHH
Confidence 345667889999999999999999885 5655 588888889999999999999999876 3455 56788899999
Q ss_pred HHhcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHH
Q 005000 495 LGRAGHLNEALEVIKNMPMKP----NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNF 570 (720)
Q Consensus 495 ~~~~g~~~eA~~~~~~~~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 570 (720)
++..|++++|...|++.-..| -..+|..+.....+.|+.+.|+..+++.++.+|+.+.....++....+.|++-.|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 999999999999999984334 3568888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 005000 571 RELRQMILDRGI 582 (720)
Q Consensus 571 ~~~~~~m~~~~~ 582 (720)
...++....++.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999998877654
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.5e-05 Score=76.93 Aligned_cols=402 Identities=13% Similarity=0.097 Sum_probs=210.5
Q ss_pred HHHHhcCChHHHHHHHhcCCC---CCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhH-HHHHHHHhcCCCch
Q 005000 158 STYCLCGEVDMARGIFDVSYK---DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTI-VLVLSACAKLKDLD 233 (720)
Q Consensus 158 ~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~ 233 (720)
..|.+.|++++|..++.-+.. ++...|-.+.-.+.-.|.+.+|..+-... |+.... ..++...-+.++-+
T Consensus 65 ~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka------~k~pL~~RLlfhlahklndEk 138 (557)
T KOG3785|consen 65 HCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA------PKTPLCIRLLFHLAHKLNDEK 138 (557)
T ss_pred HHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhCcHH
Confidence 344445555555555543221 23334444444444445555554443321 222222 22333333555555
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCC--CchhHHHH-HHHHHhcCCHHHHHHHHhhCC-
Q 005000 234 VGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK--DVISWTAI-VTGYINRGQVDMARQYFDQMP- 309 (720)
Q Consensus 234 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~l-i~~~~~~g~~~~A~~~f~~~~- 309 (720)
+-..+++.+... ..-.-+|.++.-..-.+++|.+++.++... +-...|.. .-.|.+..-++-+.++++--.
T Consensus 139 ~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~ 213 (557)
T KOG3785|consen 139 RILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR 213 (557)
T ss_pred HHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 555555444332 122233444444444566666666665542 22333322 223444444444443333221
Q ss_pred --CCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH-HHH-HHhccCcHHHHHHHHHHHHHcCCCCChhH
Q 005000 310 --ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVS-ILT-ACANLGALELGEWVKTYIDKNKVKNDIFV 385 (720)
Q Consensus 310 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~-~~~~~~~~~~a~~i~~~~~~~~~~~~~~~ 385 (720)
..++++-|.......+.=....|..-.+++.+.+-.. +.+.. ++. -+.--..-+.|.+++--+.+. .|. .
T Consensus 214 q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~--~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--A 287 (557)
T KOG3785|consen 214 QFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE--YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--A 287 (557)
T ss_pred hCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc--chhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--h
Confidence 1233344444443333323333333334443332111 11100 000 001112334555555444432 232 2
Q ss_pred hhHHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHCCCCCChH-HHHHHHH
Q 005000 386 GNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGH-------GDKSLDMFSQMLRASIIPDEV-TYVGVLS 457 (720)
Q Consensus 386 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~l~~~m~~~g~~p~~~-t~~~ll~ 457 (720)
--.|+-.|.+.+++++|..+.++.....+.-|-.-...++..|+ ..-|.+.|+-.-+.+..-|.+ .-.++.+
T Consensus 288 RlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs 367 (557)
T KOG3785|consen 288 RLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMAS 367 (557)
T ss_pred hhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHH
Confidence 33577789999999999999998865555444333333444443 344555555554555444443 2344555
Q ss_pred HHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHH-HHhcCCHH
Q 005000 458 ACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP-MK-PNSIVWGALLGA-CRVHRDAE 534 (720)
Q Consensus 458 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~-~~-p~~~~~~~ll~~-~~~~g~~~ 534 (720)
++.-.-++++.+-++..+. .+=...|...+ .+..+++..|.+.+|+++|-... .+ .|..+|.+++.- |...+.++
T Consensus 368 ~fFL~~qFddVl~YlnSi~-sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~ 445 (557)
T KOG3785|consen 368 YFFLSFQFDDVLTYLNSIE-SYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQ 445 (557)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCch
Confidence 6666678899999998885 44334444444 57899999999999999998873 12 367788777755 56677888
Q ss_pred HHHHHHHHHHhcC-CC-CcchHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 535 MAEMAAKQILELD-PD-NEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 535 ~a~~~~~~~~~~~-p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
.|-.+ +++.+ |. .....-.+++.|.+++.+--|.+.|+.+...+
T Consensus 446 lAW~~---~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 446 LAWDM---MLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred HHHHH---HHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 76555 44444 32 23345567888999999999999998876544
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=4e-07 Score=91.91 Aligned_cols=226 Identities=12% Similarity=0.035 Sum_probs=152.1
Q ss_pred CChhHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHH
Q 005000 327 NRFREALTLFREMQTSN-IRPD--EFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQ 403 (720)
Q Consensus 327 g~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 403 (720)
+..+.++.-+.+++... ..|+ ...+...-..+...|+.+.|...+..+++.. +.+..+|+.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45666777777776532 2222 2345555556677788888888887777764 456788899999999999999999
Q ss_pred HHHHhccC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcC
Q 005000 404 RVFREMLR--K-DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHG 480 (720)
Q Consensus 404 ~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 480 (720)
..|+...+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|.+... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 99998853 3 5678888888899999999999999999875 55543222222234556789999999976542 2
Q ss_pred CCccHHHHHHHHHHHHhcCCHHH--HHHHHHhC-C----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-Cc
Q 005000 481 IEPNEAHYGCMVDLLGRAGHLNE--ALEVIKNM-P----MKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPD-NE 551 (720)
Q Consensus 481 ~~p~~~~~~~li~~~~~~g~~~e--A~~~~~~~-~----~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~-~~ 551 (720)
..|+...+ .++.. ..|++.+ +.+.+.+. . ..| ....|..+...+...|++++|+..|+++++.+|. ..
T Consensus 195 ~~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 195 LDKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 23332222 23333 3455433 33333321 1 112 3457899999999999999999999999999974 44
Q ss_pred chHHHHHhH
Q 005000 552 AVYVLLCNI 560 (720)
Q Consensus 552 ~~~~~l~~~ 560 (720)
.+-..+..+
T Consensus 272 e~~~~~~e~ 280 (296)
T PRK11189 272 EHRYALLEL 280 (296)
T ss_pred HHHHHHHHH
Confidence 444444443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.1e-06 Score=91.07 Aligned_cols=531 Identities=12% Similarity=0.008 Sum_probs=266.1
Q ss_pred HHHHHHHHHHHhCCCCCh-hHhhHHhcccccccCChHHHHHHhccCC---CCCcchHHHHHHHHHcCCCchHHHHHHHHh
Q 005000 31 QLKQIHSQTIKLGLLTNP-TVQNKLVTFCCSEKGDMKYACKVFRKIP---RPSVCLWNTMIKGYSRIDSHKNGVLIYLDM 106 (720)
Q Consensus 31 ~~~~~~~~~~~~g~~~~~-~~~~~ll~~~y~~~g~~~~A~~~f~~~~---~~~~~~~n~li~~~~~~g~~~~A~~l~~~m 106 (720)
....+|..+....+.++. ..+..|=.. |...-+...|.+.|+... ..|..+|..+...|++..+++.|..+.-.-
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~i-Yrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQI-YRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 456677777777776653 455666666 877778889999998654 467788999999999999999999883322
Q ss_pred HhCCC-CCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHH
Q 005000 107 LKSDV-RPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWN 185 (720)
Q Consensus 107 ~~~g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~ 185 (720)
-+... ..-...|..+--.+-..++...+..-|+...+.. +.|...|..|..+|..+|++..|.++|++...-++.+|-
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y 631 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY 631 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH
Confidence 22110 0011112222223456677888888888887754 447788999999999999999999999887665554443
Q ss_pred HH---HHHHHhCCChhHHHHHHHHHHHC------CCCCCHhhHHHHHHHHhcCCCchHHHH-------HHHHHHHcCCCC
Q 005000 186 AM---FSGYKRVKQFDETRKLFGEMERK------GVLPTSVTIVLVLSACAKLKDLDVGKR-------AHRYVKECKIVP 249 (720)
Q Consensus 186 ~l---i~~~~~~g~~~~A~~l~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~~a~~-------~~~~~~~~g~~~ 249 (720)
.- ....+..|.+.+|+..+...... +..--..++..+...+...|-...+.. .+...+......
T Consensus 632 ~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~ 711 (1238)
T KOG1127|consen 632 GRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQS 711 (1238)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 32 22346679999999988776432 111122333333333333333223333 333322222222
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchh--HHHHHHH-HHhcCCH---H---HHHHHHhhCC--CCCccchHH
Q 005000 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVIS--WTAIVTG-YINRGQV---D---MARQYFDQMP--ERDYVLWTA 318 (720)
Q Consensus 250 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~-~~~~g~~---~---~A~~~f~~~~--~~~~~~~~~ 318 (720)
+...|-.+ .+|..+|-... ++.+. +..++.. .-+.+.. + -+.+.+-.-. ..+..+|..
T Consensus 712 ~~~~Wi~a----------sdac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyN 780 (1238)
T KOG1127|consen 712 DRLQWIVA----------SDACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYN 780 (1238)
T ss_pred hHHHHHHH----------hHHHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHH
Confidence 22222222 22233333333 22111 0001110 1111111 0 0011110000 012445555
Q ss_pred HHHHHHh----c----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHh
Q 005000 319 MIDGYLR----V----NRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALI 390 (720)
Q Consensus 319 li~~~~~----~----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li 390 (720)
++..|.+ . .+...|+..+.+.++. ..|...+-..+......|++..+..-+-...... +....+|..+.
T Consensus 781 LGinylr~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVlsg~gnva~aQHCfIks~~se-p~~~~~W~Nlg 857 (1238)
T KOG1127|consen 781 LGINYLRYFLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVLSGIGNVACAQHCFIKSRFSE-PTCHCQWLNLG 857 (1238)
T ss_pred HhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHhhccchhhhhhhhhhhhhhcc-ccchhheeccc
Confidence 5544443 1 1223455555555442 2333333334444444444443332222222211 23345555566
Q ss_pred hhhhhcCCHHHHHHHHHhccCC---CHHHHHHHHHHHHHcCChHHHHHHHHH----------------------------
Q 005000 391 DMYCKCGDVEKAQRVFREMLRK---DKFTWTAMIVGLAINGHGDKSLDMFSQ---------------------------- 439 (720)
Q Consensus 391 ~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~---------------------------- 439 (720)
-.+.+..+++.|...|.....- |.+.|-.+.......|+.-+++.+|..
T Consensus 858 vL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng 937 (1238)
T KOG1127|consen 858 VLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNG 937 (1238)
T ss_pred eeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhcc
Confidence 6666666666666666655321 334444333333334444444444332
Q ss_pred -----------HHH---------CCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHH----HHHHH
Q 005000 440 -----------MLR---------ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGC----MVDLL 495 (720)
Q Consensus 440 -----------m~~---------~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~----li~~~ 495 (720)
.-. .|.+-+...|........+.+.+..+.+...+...-...+-+...|+. ....+
T Consensus 938 ~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~ 1017 (1238)
T KOG1127|consen 938 NIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLE 1017 (1238)
T ss_pred chHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh
Confidence 111 111222244555555555555555555544443321111223333332 22334
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc---hHHHHHhHhhhcCChhHHHH
Q 005000 496 GRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA---VYVLLCNIYAACNRWDNFRE 572 (720)
Q Consensus 496 ~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~ 572 (720)
...|.++.|..-+...+..-+..+-.+-+.. .-.|+++++.+.|++++.+--++.. ....++.....++.-+.|..
T Consensus 1018 lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~ 1096 (1238)
T KOG1127|consen 1018 LSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQF 1096 (1238)
T ss_pred hhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHH
Confidence 4455666555555444333333333333333 4467899999999999887544333 33344445566677777777
Q ss_pred HHHHHH
Q 005000 573 LRQMIL 578 (720)
Q Consensus 573 ~~~~m~ 578 (720)
.+-+.+
T Consensus 1097 lLfe~~ 1102 (1238)
T KOG1127|consen 1097 LLFEVK 1102 (1238)
T ss_pred HHHHHH
Confidence 644443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.3e-06 Score=88.85 Aligned_cols=421 Identities=14% Similarity=0.090 Sum_probs=260.9
Q ss_pred CChhHhhHHhc--ccccccCChHHHHHHhccCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhHhC-C-------C-CCC
Q 005000 46 TNPTVQNKLVT--FCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKS-D-------V-RPD 114 (720)
Q Consensus 46 ~~~~~~~~ll~--~~y~~~g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~-g-------~-~p~ 114 (720)
.|..+-..+++ . |..-|+++.|.+-..-+. .-..|..|.+.+.+..+.+-|.-.+-.|... | . .|+
T Consensus 724 Cd~~TRkaml~FSf-yvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~ 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSF-YVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE 800 (1416)
T ss_pred cCHHHHHhhhceeE-EEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc
Confidence 35666666664 5 778899999988776654 3456999999999988877776665555421 1 1 122
Q ss_pred cccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CeeeHHHHHHHHHh
Q 005000 115 NYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD-DVVTWNAMFSGYKR 193 (720)
Q Consensus 115 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~ 193 (720)
.+=.-+.-.....|.+++|+.++.+..+ |..|-..|...|.+++|.++-+.-.+- -..||.....-+-.
T Consensus 801 -e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 801 -EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred -chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence 2223333334678999999999998877 344557788899999999988653331 22366666666777
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 005000 194 VKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEI 273 (720)
Q Consensus 194 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 273 (720)
.++.+.|++.|++-.. . - +-...++. .++...++.... ..|...|.--....-..|+++.|+.+
T Consensus 871 r~Di~~AleyyEK~~~---h-a-fev~rmL~-----e~p~~~e~Yv~~------~~d~~L~~WWgqYlES~GemdaAl~~ 934 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGV---H-A-FEVFRMLK-----EYPKQIEQYVRR------KRDESLYSWWGQYLESVGEMDAALSF 934 (1416)
T ss_pred hccHHHHHHHHHhcCC---h-H-HHHHHHHH-----hChHHHHHHHHh------ccchHHHHHHHHHHhcccchHHHHHH
Confidence 8899999999886421 1 0 11111111 111111122111 12445555555556678999999999
Q ss_pred HhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 005000 274 FGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVS 353 (720)
Q Consensus 274 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 353 (720)
|.... -|-++++..+-.|+.++|-++-++- .|..+...+...|-..|++.+|+..|.+.+ +|..
T Consensus 935 Y~~A~-----D~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsn 998 (1416)
T KOG3617|consen 935 YSSAK-----DYFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSN 998 (1416)
T ss_pred HHHhh-----hhhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHH
Confidence 88644 4777888888889999998887654 355667788889999999999999998775 3444
Q ss_pred HHHHHhccCcH---------------HHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhcc--------
Q 005000 354 ILTACANLGAL---------------ELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML-------- 410 (720)
Q Consensus 354 ll~~~~~~~~~---------------~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------- 410 (720)
.|+.|-..+-- -.|-.+++ +.|.. ..--+..|-|.|.+.+|+++--+-.
T Consensus 999 AIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyE---e~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lI 1070 (1416)
T KOG3617|consen 999 AIRLCKENDMKDRLANLALMSGGSDLVSAARYYE---ELGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLI 1070 (1416)
T ss_pred HHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHH---Hcchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHH
Confidence 55444332211 11122221 22211 1234556778888888777633221
Q ss_pred ------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCcc
Q 005000 411 ------RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN 484 (720)
Q Consensus 411 ------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 484 (720)
..|+...+.-..-+..+.++++|..++-...+ |...+..|... ++.-..++-+.|.-...-.|+
T Consensus 1071 a~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~-nv~vtee~aE~mTp~Kd~~~~ 1140 (1416)
T KOG3617|consen 1071 AKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNR-NVRVTEEFAELMTPTKDDMPN 1140 (1416)
T ss_pred HHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcC-CCchhHHHHHhcCcCcCCCcc
Confidence 22666667777778888888888888776554 34455555443 333334444444322212233
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 005000 485 ----EAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEM 535 (720)
Q Consensus 485 ----~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 535 (720)
......+.+.+.++|.+..|-+-|.+.+.+ ...+.++.+.||.++
T Consensus 1141 e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK------l~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1141 EQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK------LSAMRALLKSGDTQK 1189 (1416)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH------HHHHHHHHhcCCcce
Confidence 244556778888899998888888887633 123455556666554
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.86 E-value=9e-06 Score=86.46 Aligned_cols=427 Identities=17% Similarity=0.103 Sum_probs=264.6
Q ss_pred hCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC----CCeee
Q 005000 108 KSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK----DDVVT 183 (720)
Q Consensus 108 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~----~~~~~ 183 (720)
...+.-|+..|-.+--+....|+++.+.+.|++....- ......|+.+-..|..+|.-..|..+.+.-.. |+..+
T Consensus 316 ~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s 394 (799)
T KOG4162|consen 316 LKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS 394 (799)
T ss_pred HhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch
Confidence 34456677888888888889999999999999988743 34567888899999999999999999976433 33233
Q ss_pred HHHHHH-HHH-hCCChhHHHHHHHHHHHC--C----CCCCHhhHHHHHHHHhc----CC-------CchHHHHHHHHHHH
Q 005000 184 WNAMFS-GYK-RVKQFDETRKLFGEMERK--G----VLPTSVTIVLVLSACAK----LK-------DLDVGKRAHRYVKE 244 (720)
Q Consensus 184 ~~~li~-~~~-~~g~~~~A~~l~~~m~~~--g----~~p~~~t~~~ll~~~~~----~~-------~~~~a~~~~~~~~~ 244 (720)
--.|+. .|. +-+..++++++-.+.... + +.|- .|..+--+|+. .. ...++.+.++..++
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~--~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~ 472 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPR--GYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ 472 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhh--HHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh
Confidence 333332 233 347778888877776651 1 2332 23333333321 11 12346666777766
Q ss_pred cCC-CCChHHHHHHHHHHHhcCCHHHHHHHHhhcCC----CCchhHHHHHHHHHhcCCHHHHHHHHhhCCCC---Cccch
Q 005000 245 CKI-VPNLILENALTDMYAACGEMGFALEIFGNIKN----KDVISWTAIVTGYINRGQVDMARQYFDQMPER---DYVLW 316 (720)
Q Consensus 245 ~g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~ 316 (720)
.+. .|++..| +.--|+-.++++.|.+...+..+ .+...|..+.-.+...+++.+|+.+.+...+. |-...
T Consensus 473 ~d~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~ 550 (799)
T KOG4162|consen 473 FDPTDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLM 550 (799)
T ss_pred cCCCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhc
Confidence 553 3444333 44456777889999888776543 57889999999999999999999998876543 22222
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhh
Q 005000 317 TAMIDGYLRVNRFREALTLFREMQTS--NIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYC 394 (720)
Q Consensus 317 ~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~ 394 (720)
..-+..-..-++.++|+.....+... ...|-..+.. .|....-..-...... .....+.++..+.....
T Consensus 551 ~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~--------~g~~~~lk~~l~la~~-q~~~a~s~sr~ls~l~a 621 (799)
T KOG4162|consen 551 DGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLD--------EGKLLRLKAGLHLALS-QPTDAISTSRYLSSLVA 621 (799)
T ss_pred hhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhh--------hhhhhhhhcccccCcc-cccccchhhHHHHHHHH
Confidence 22233333467778887777666531 0011000000 1110000000000000 01111222222221111
Q ss_pred ---hcCCHHHHHHHHHhccCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCh
Q 005000 395 ---KCGDVEKAQRVFREMLRKD------KFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMV 465 (720)
Q Consensus 395 ---~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 465 (720)
+.-..+.....+...+.++ ...|......+...++.++|...+.+....- .-....|......+...|..
T Consensus 622 ~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~ 700 (799)
T KOG4162|consen 622 SQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQL 700 (799)
T ss_pred hhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhh
Confidence 1111111122222222333 2356666778888899999988887776531 22334555555667788999
Q ss_pred hhHHHHHHHHHHHcCCCcc-HHHHHHHHHHHHhcCCHHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 005000 466 DEGREYFADMTIQHGIEPN-EAHYGCMVDLLGRAGHLNEALE--VIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAA 540 (720)
Q Consensus 466 ~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~--~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 540 (720)
++|.+.|.... .+.|+ +....++..++.+.|+..-|.. ++..+ .++| +...|..+.....+.|+.++|.+.|
T Consensus 701 ~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf 777 (799)
T KOG4162|consen 701 EEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECF 777 (799)
T ss_pred HHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHH
Confidence 99999998764 56664 6778889999999998777777 77776 6777 7889999999999999999999999
Q ss_pred HHHHhcCCCCcc
Q 005000 541 KQILELDPDNEA 552 (720)
Q Consensus 541 ~~~~~~~p~~~~ 552 (720)
.-++++++.+|.
T Consensus 778 ~aa~qLe~S~PV 789 (799)
T KOG4162|consen 778 QAALQLEESNPV 789 (799)
T ss_pred HHHHhhccCCCc
Confidence 999999887653
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.1e-06 Score=77.30 Aligned_cols=385 Identities=12% Similarity=0.071 Sum_probs=188.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCC---CCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHH-HHHHhc
Q 005000 153 QNALISTYCLCGEVDMARGIFDVSYK---DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLV-LSACAK 228 (720)
Q Consensus 153 ~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~~~~~ 228 (720)
+++.+..+.+..++++|.+++..-.+ ++....+.+...|....++..|-+.++++-.. .|...-|..- ...+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 34444445566666666666653332 23344555555666666666666666665443 3333333211 122233
Q ss_pred CCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhC
Q 005000 229 LKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQM 308 (720)
Q Consensus 229 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~ 308 (720)
.+.+..|..+...+... ++ ..+..+.. -.......+++..+..+.++.
T Consensus 91 A~i~ADALrV~~~~~D~---~~--L~~~~lqL---------------------------qaAIkYse~Dl~g~rsLveQl 138 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PA--LHSRVLQL---------------------------QAAIKYSEGDLPGSRSLVEQL 138 (459)
T ss_pred hcccHHHHHHHHHhcCC---HH--HHHHHHHH---------------------------HHHHhcccccCcchHHHHHhc
Confidence 44444444444433321 11 11111100 001112334444444445444
Q ss_pred CC-CCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC-----
Q 005000 309 PE-RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKND----- 382 (720)
Q Consensus 309 ~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~----- 382 (720)
+. .+..+.+.......+.|++++|++-|+...+-+--.....|+..+. ..+.++...|....+.++++|++..
T Consensus 139 p~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgI 217 (459)
T KOG4340|consen 139 PSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGI 217 (459)
T ss_pred cCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCc
Confidence 42 3333444444444455555555555555544332222333443332 2233455555555555554443211
Q ss_pred -----------------------hhHhhHHhhhhhhcCCHHHHHHHHHhccCC-----CHHHHHHHHHHHHHcCChHHHH
Q 005000 383 -----------------------IFVGNALIDMYCKCGDVEKAQRVFREMLRK-----DKFTWTAMIVGLAINGHGDKSL 434 (720)
Q Consensus 383 -----------------------~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~ 434 (720)
+..+|.-...+.+.|+.+.|.+.+-.|+.+ |++|...+.-.- ..+++.+..
T Consensus 218 Gm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~ 296 (459)
T KOG4340|consen 218 GMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGF 296 (459)
T ss_pred cceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccH
Confidence 112233334567889999999999999754 777776654322 245565666
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCC-CccHHHHHHHHHHHH-hcCCHHHHHHHHHhCC
Q 005000 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGI-EPNEAHYGCMVDLLG-RAGHLNEALEVIKNMP 512 (720)
Q Consensus 435 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~-~~g~~~eA~~~~~~~~ 512 (720)
+-++-+...+.- ...||..++-.|++..-++.|-.++.+-. ..-. -.+...|+ |++++. -.-..++|++-++.+.
T Consensus 297 ~KLqFLL~~nPf-P~ETFANlLllyCKNeyf~lAADvLAEn~-~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 297 EKLQFLLQQNPF-PPETFANLLLLYCKNEYFDLAADVLAENA-HLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHHHHHHhcCCC-ChHHHHHHHHHHhhhHHHhHHHHHHhhCc-chhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence 666666654332 34699999999999998988888875421 0000 11233343 334433 3446677776665541
Q ss_pred CCCC--HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 513 MKPN--SIVWGALLGACRVHRD---AEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 513 ~~p~--~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
..-. ......-+.--+..++ ...+..-+++.+++- -......+++|.+..++..++++|..-.+
T Consensus 374 ~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 374 GMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 0000 0000011111112221 112333344444432 12455678889999999999998876543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=8.4e-08 Score=98.35 Aligned_cols=217 Identities=15% Similarity=0.112 Sum_probs=162.1
Q ss_pred ccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCC---CHHHHHHHHHHHHHcCChHHHHHH
Q 005000 360 NLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK---DKFTWTAMIVGLAINGHGDKSLDM 436 (720)
Q Consensus 360 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l 436 (720)
+.|++..|.-.++..++.+ +.+...|.-|...-...++-..|+..+.+..+- |....-+|...|...|.-.+|+..
T Consensus 297 ~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred hcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 4555666655666655554 455667777777777777777777777766433 566677777788888888888888
Q ss_pred HHHHHHCCCC--------CChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 005000 437 FSQMLRASII--------PDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVI 508 (720)
Q Consensus 437 ~~~m~~~g~~--------p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~ 508 (720)
++.-+....+ ++..+-.. .............++|-++....+..+|++++.+|.-+|.-.|.+++|.+.|
T Consensus 376 L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 376 LDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 8887653211 01000000 1112222334455667677666776788999999999999999999999999
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 509 KNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 509 ~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
+.+ ..+| |...||-|...+....+.++|+.+|.+++++.|....+.+.|+-.|...|.|+||.+.+-.+..
T Consensus 454 ~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 454 EAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 997 6778 7889999999999999999999999999999999999999999999999999999998776654
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.2e-05 Score=77.02 Aligned_cols=206 Identities=8% Similarity=0.027 Sum_probs=116.2
Q ss_pred hHHHHHHHHHHHHhCCCCChhHhhHHhcccccccCChHHHHHHhccCCCCCcchHHH--HHHHHH--cCCCchHHHHHHH
Q 005000 29 MHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNT--MIKGYS--RIDSHKNGVLIYL 104 (720)
Q Consensus 29 ~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~y~~~g~~~~A~~~f~~~~~~~~~~~n~--li~~~~--~~g~~~~A~~l~~ 104 (720)
.+.+.+.-..++..+..+.....-.++.. ...+++++|+++.+.-+-. .++|. +=.+|+ +.+..++|+..+.
T Consensus 28 ~e~a~k~~~Kil~~~pdd~~a~~cKvVal--Iq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~Dealk~~~ 103 (652)
T KOG2376|consen 28 YEEAVKTANKILSIVPDDEDAIRCKVVAL--IQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLDEALKTLK 103 (652)
T ss_pred HHHHHHHHHHHHhcCCCcHhhHhhhHhhh--hhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHHHHHHHHh
Confidence 56666677777776643334444455544 5778888888776543321 11222 234443 5678888888877
Q ss_pred HhHhCCCCCC-cccHHHHHHHHhccCChHHHHHHHHHHHHhCCC-CChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCee
Q 005000 105 DMLKSDVRPD-NYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFD-SSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVV 182 (720)
Q Consensus 105 ~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~ 182 (720)
. ..++ ..+...-...|-+.+++++|..+|+.+.+.+.+ .|...-..++..-. .-.+. +.+..+.....
T Consensus 104 ~-----~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~-~~q~v~~v~e~ 173 (652)
T KOG2376|consen 104 G-----LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ-LLQSVPEVPED 173 (652)
T ss_pred c-----ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-HHHhccCCCcc
Confidence 2 2333 335555556677888899999999988886642 22222223322211 11111 34444443344
Q ss_pred eHHHHH---HHHHhCCChhHHHHHHHHHHHCC-------------CCCCHhh-HHHHHHHHhcCCCchHHHHHHHHHHHc
Q 005000 183 TWNAMF---SGYKRVKQFDETRKLFGEMERKG-------------VLPTSVT-IVLVLSACAKLKDLDVGKRAHRYVKEC 245 (720)
Q Consensus 183 ~~~~li---~~~~~~g~~~~A~~l~~~m~~~g-------------~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~ 245 (720)
+|..+- ..+...|++.+|+++++...+.+ +.-+..+ -..+.-.+-..|+-++|.+++..+++.
T Consensus 174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR 253 (652)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 444333 35677899999999988873211 1111111 112333445678888888888888887
Q ss_pred CCC
Q 005000 246 KIV 248 (720)
Q Consensus 246 g~~ 248 (720)
...
T Consensus 254 ~~~ 256 (652)
T KOG2376|consen 254 NPA 256 (652)
T ss_pred cCC
Confidence 543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.2e-07 Score=86.49 Aligned_cols=226 Identities=14% Similarity=0.055 Sum_probs=147.5
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Q 005000 185 NAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAAC 264 (720)
Q Consensus 185 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 264 (720)
+.|.+.|.+.|.+.+|...|+.-+.. .|-..||..+-+.|.+..+...|..++..-++. ++.|+....-....+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 45667888888888888888777665 455667777777788878888887777776665 344544444555566666
Q ss_pred CCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 005000 265 GEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNI 344 (720)
Q Consensus 265 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 344 (720)
++.++|.++|+...+. ...++.+...+..+|.-.++++-|+..|+++.+.|+
T Consensus 304 ~~~~~a~~lYk~vlk~----------------------------~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~ 355 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKL----------------------------HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA 355 (478)
T ss_pred HhHHHHHHHHHHHHhc----------------------------CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC
Confidence 6666666666654321 122455566667778888888889999988888884
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC--hhHhhHHhhhhhhcCCHHHHHHHHHhccCC---CHHHHHH
Q 005000 345 RPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKND--IFVGNALIDMYCKCGDVEKAQRVFREMLRK---DKFTWTA 419 (720)
Q Consensus 345 ~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~ 419 (720)
. +...|..+--+|...++++.+..-+..+...--.|+ ..+|-.|.......|++..|.+.|+-.... +..++|.
T Consensus 356 ~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnN 434 (478)
T KOG1129|consen 356 Q-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNN 434 (478)
T ss_pred C-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHh
Confidence 4 566677777777777777777766666655433232 335555666666667777777776655432 3345555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH
Q 005000 420 MIVGLAINGHGDKSLDMFSQMLR 442 (720)
Q Consensus 420 li~~~~~~g~~~~A~~l~~~m~~ 442 (720)
+...-.+.|+.++|..++.....
T Consensus 435 LavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 435 LAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHhhcCchHHHHHHHHHhhh
Confidence 55555566666666666655544
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.81 E-value=0.00014 Score=76.19 Aligned_cols=440 Identities=14% Similarity=0.089 Sum_probs=203.5
Q ss_pred CCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 005000 93 IDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGI 172 (720)
Q Consensus 93 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 172 (720)
.+++...+.+.+..++. .+-...|....--.+...|+.++|....+..++.. ..+.+.|..+.-.+....++++|.+.
T Consensus 20 ~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHH
Confidence 34455555555555442 11222333332223344455555555544444422 12233444444444444555555555
Q ss_pred HhcC---CCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCC-C
Q 005000 173 FDVS---YKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKI-V 248 (720)
Q Consensus 173 f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~ 248 (720)
|... .+.|...|.-+----.+.|+++.....-.+..+.. +-....|.....+.--.|+...|..+.+...+... .
T Consensus 98 y~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 98 YRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 5432 22334444444444444455555544444444321 11233344444444455555555555555554431 2
Q ss_pred CChHHHHHHH------HHHHhcCCHHHHHHHHhhcCCC--C-chhHHHHHHHHHhcCCHHHHHHHHhhCCCCCc--cchH
Q 005000 249 PNLILENALT------DMYAACGEMGFALEIFGNIKNK--D-VISWTAIVTGYINRGQVDMARQYFDQMPERDY--VLWT 317 (720)
Q Consensus 249 ~~~~~~~~li------~~y~~~g~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~--~~~~ 317 (720)
|+...+.-.. ....+.|..++|.+.+...... | ...-.+-...+.+.+++++|..++..+..+++ +.|+
T Consensus 177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy 256 (700)
T KOG1156|consen 177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYY 256 (700)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHH
Confidence 3333332221 2233445555555555443331 1 11222334445566666666666666655433 2232
Q ss_pred H-HHHHHHhcCChhHHH-HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhh
Q 005000 318 A-MIDGYLRVNRFREAL-TLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCK 395 (720)
Q Consensus 318 ~-li~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~ 395 (720)
. +..++.+--+.-+++ .+|....+.- +-.......-++......-.+....++....+.|+++ ++..+...|-.
T Consensus 257 ~~l~~~lgk~~d~~~~lk~ly~~ls~~y-~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~ 332 (700)
T KOG1156|consen 257 EGLEKALGKIKDMLEALKALYAILSEKY-PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKD 332 (700)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhcC-cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhc
Confidence 2 222222222222232 4444433221 0000000000111111122233334444455555443 22333333322
Q ss_pred cCCHHH----HHHHHHhc--------------cCCCHHHHHH--HHHHHHHcCChHHHHHHHHHHHHCCCCCChH-HHHH
Q 005000 396 CGDVEK----AQRVFREM--------------LRKDKFTWTA--MIVGLAINGHGDKSLDMFSQMLRASIIPDEV-TYVG 454 (720)
Q Consensus 396 ~g~~~~----A~~~~~~~--------------~~~~~~~~~~--li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ 454 (720)
-...+- +..+...+ ..|....|+. ++..|-..|+++.|+.+++..+.. .|+.+ -|..
T Consensus 333 p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~ 410 (700)
T KOG1156|consen 333 PEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLV 410 (700)
T ss_pred hhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHH
Confidence 111110 11111111 1234455554 567788889999999999888864 66654 5555
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CH--------HHHHHHH-
Q 005000 455 VLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKP-NS--------IVWGALL- 524 (720)
Q Consensus 455 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p-~~--------~~~~~ll- 524 (720)
=.+.+.+.|++++|..++++..+ . -.||...-.--+.-..|+++.++|.++.....-.. +. -.|-.+-
T Consensus 411 KaRI~kH~G~l~eAa~~l~ea~e-l-D~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~ 488 (700)
T KOG1156|consen 411 KARIFKHAGLLDEAAAWLDEAQE-L-DTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLED 488 (700)
T ss_pred HHHHHHhcCChHHHHHHHHHHHh-c-cchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhh
Confidence 56778889999999999888752 1 13454444455566678888998888876652111 21 2343332
Q ss_pred -HHHHhcCCHHHHHHHHHHH
Q 005000 525 -GACRVHRDAEMAEMAAKQI 543 (720)
Q Consensus 525 -~~~~~~g~~~~a~~~~~~~ 543 (720)
.+|.+.|++.+|..-+..+
T Consensus 489 g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 489 GEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred hHHHHHHHHHHHHHHHHhhH
Confidence 4577777777665544443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.5e-05 Score=83.56 Aligned_cols=426 Identities=13% Similarity=0.097 Sum_probs=209.1
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCe--e-eHHHHHHHHHhC-----C
Q 005000 124 GFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDV--V-TWNAMFSGYKRV-----K 195 (720)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~--~-~~~~li~~~~~~-----g 195 (720)
.+...|++++|++.+..-.+. +.....+.......|.+.|+.++|..++..+..+|+ . -|..+..+..-. .
T Consensus 13 il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccc
Confidence 345566666666666553332 222334455556666666777777666666554322 2 233333333111 2
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCc-hHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 005000 196 QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDL-DVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIF 274 (720)
Q Consensus 196 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 274 (720)
+.+...++|+++...- |.......+.-.+.....+ ..+...+...++.|++ .+++.|-..|....+..-...++
T Consensus 92 ~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 92 DVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHH
Confidence 3455556666655442 3322222221111111111 2333444444555543 23444445555433333333333
Q ss_pred hhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhh-CCCCCcc--chHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHH
Q 005000 275 GNIKNKDVISWTAIVTGYINRGQVDMARQYFDQ-MPERDYV--LWTAMIDGYLRVNRFREALTLFREMQTSNIRPD-EFT 350 (720)
Q Consensus 275 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~-~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t 350 (720)
...... +...+.+.... .. -..|... ++.-+...|-..|++++|+++.++.++. .|+ ...
T Consensus 167 ~~~~~~-----------l~~~~~~~~~~---~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~el 230 (517)
T PF12569_consen 167 EEYVNS-----------LESNGSFSNGD---DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVEL 230 (517)
T ss_pred HHHHHh-----------hcccCCCCCcc---ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHH
Confidence 322110 00000000000 00 0011222 3345566677778888888888877765 344 445
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCCC------H----HHHH--
Q 005000 351 IVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKD------K----FTWT-- 418 (720)
Q Consensus 351 ~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~------~----~~~~-- 418 (720)
|..-...+-+.|++..|....+.+...+ ..|..+-+-.+..+.++|++++|.+++....+++ . ..|-
T Consensus 231 y~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~ 309 (517)
T PF12569_consen 231 YMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFET 309 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHH
Confidence 6666666777888888888887777765 4566666777777778888888888877665543 1 1332
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHC--CCCC-------------ChHHHHHHHHHHHhcCC-------hhhHHHHHHHHH
Q 005000 419 AMIVGLAINGHGDKSLDMFSQMLRA--SIIP-------------DEVTYVGVLSACTHTGM-------VDEGREYFADMT 476 (720)
Q Consensus 419 ~li~~~~~~g~~~~A~~l~~~m~~~--g~~p-------------~~~t~~~ll~a~~~~g~-------~~~a~~~~~~m~ 476 (720)
-...+|.+.|++..|++.|....+. .+.- ...+|..++...-+... ...|.+++-.+.
T Consensus 310 e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~ 389 (517)
T PF12569_consen 310 ECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELH 389 (517)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh
Confidence 2356777888888777776655431 1111 12233333332222111 123344443332
Q ss_pred HHcCCCc-----------cHHHHHHHHHHH---HhcCCHHHHHHHHH-----------hC----C--CCCCHHHHHHHHH
Q 005000 477 IQHGIEP-----------NEAHYGCMVDLL---GRAGHLNEALEVIK-----------NM----P--MKPNSIVWGALLG 525 (720)
Q Consensus 477 ~~~~~~p-----------~~~~~~~li~~~---~~~g~~~eA~~~~~-----------~~----~--~~p~~~~~~~ll~ 525 (720)
..-.... +..--..+-.-- .+...-+++...-. +. + ..||+.- ..|+
T Consensus 390 d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~G-ekL~- 467 (517)
T PF12569_consen 390 DKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLG-EKLL- 467 (517)
T ss_pred cCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCccH-HHHh-
Confidence 1100000 000000000000 01111111111110 00 1 1122211 1122
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHH
Q 005000 526 ACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQM 576 (720)
Q Consensus 526 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 576 (720)
....=.++|.++++-+.+..|++..++..--.+|.+.|++--|.+-+.+
T Consensus 468 --~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 468 --KTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred --cCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 2334578899999999999999999999999999999999988876543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.4e-05 Score=76.88 Aligned_cols=294 Identities=19% Similarity=0.178 Sum_probs=148.7
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHH---HHHHhcCCHHHHHHHHhhCCCCCccchHHHH---HHHHhcCChh
Q 005000 257 LTDMYAACGEMGFALEIFGNIKNKDVISWTAIV---TGYINRGQVDMARQYFDQMPERDYVLWTAMI---DGYLRVNRFR 330 (720)
Q Consensus 257 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~ 330 (720)
|...+...|++.+|+.-|....+-|+..|.++. ..|...|+-..|+.-|.+..+..+..+.+-| ..+.++|.++
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele 123 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELE 123 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHH
Confidence 444455566666666666666666665555543 2355556655555555555443333333322 3456667777
Q ss_pred HHHHHHHHHHHCCCCCCHH----------------HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhh
Q 005000 331 EALTLFREMQTSNIRPDEF----------------TIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYC 394 (720)
Q Consensus 331 ~A~~~~~~m~~~g~~p~~~----------------t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~ 394 (720)
+|..-|+..++.. |+.. .....+..+...|+...+......+++.. +.|...+..-..+|.
T Consensus 124 ~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i 200 (504)
T KOG0624|consen 124 QAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYI 200 (504)
T ss_pred HHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHH
Confidence 7777777666542 2111 11122223344556666666666655543 345556666666666
Q ss_pred hcCCHHHHHHHHHhc---cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChH-HHHHHHHHHHhcCChhhHHH
Q 005000 395 KCGDVEKAQRVFREM---LRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV-TYVGVLSACTHTGMVDEGRE 470 (720)
Q Consensus 395 ~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~ 470 (720)
..|++..|+.-++.. ...+....--+-..+...|+.+.++...++-++ +.||.. .|... ..+.+..+
T Consensus 201 ~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~Y-------KklkKv~K 271 (504)
T KOG0624|consen 201 AEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFY-------KKLKKVVK 271 (504)
T ss_pred hcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHH-------HHHHHHHH
Confidence 777776666555544 233455555555566666666666666666655 355542 11100 00111111
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--HHH---HHHHHHHHHhcCCHHHHHHHHHHHH
Q 005000 471 YFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN--SIV---WGALLGACRVHRDAEMAEMAAKQIL 544 (720)
Q Consensus 471 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~--~~~---~~~ll~~~~~~g~~~~a~~~~~~~~ 544 (720)
.++.|. ...+.++|.++++-.++. ...|. .+. +..+-..++..+++.+|++...+++
T Consensus 272 ~les~e-----------------~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL 334 (504)
T KOG0624|consen 272 SLESAE-----------------QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL 334 (504)
T ss_pred HHHHHH-----------------HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH
Confidence 111111 122334444444444332 23332 111 2223334455556666666666666
Q ss_pred hcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 545 ELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 545 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
+++|+|..++...+.+|.-..+|++|+.-++...+
T Consensus 335 ~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 335 DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 66666666666666666666666666665555543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.8e-06 Score=83.58 Aligned_cols=215 Identities=14% Similarity=0.097 Sum_probs=140.9
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCCCHH----------HHHHHH
Q 005000 352 VSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKF----------TWTAMI 421 (720)
Q Consensus 352 ~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~----------~~~~li 421 (720)
..+.++..+..+++.+.+-+....+.. .++.-++.....|...|.+.+.....+...+..-. +...+.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 345555556667777777777666654 55556667777788877777776666655443211 122234
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHH-HHHHHHHHHHhcCC
Q 005000 422 VGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEA-HYGCMVDLLGRAGH 500 (720)
Q Consensus 422 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~ 500 (720)
.+|.+.++++.|+..|++....-..||..+ +....+++....+... -+.|... -...-..-+.+.|+
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccC
Confidence 466667788888888888766544544322 2223344444443321 2334321 11122556778888
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHH
Q 005000 501 LNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMIL 578 (720)
Q Consensus 501 ~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 578 (720)
+.+|...+.++ ...| |...|.....+|.+.|++..|..-.+..++++|+....|..=+-++....+|++|.+.+.+..
T Consensus 374 y~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888887 4445 677788888888888888888888888888888888888888888888888888888887766
Q ss_pred hC
Q 005000 579 DR 580 (720)
Q Consensus 579 ~~ 580 (720)
+.
T Consensus 454 e~ 455 (539)
T KOG0548|consen 454 EL 455 (539)
T ss_pred hc
Confidence 54
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=0.00078 Score=72.34 Aligned_cols=202 Identities=10% Similarity=0.072 Sum_probs=140.7
Q ss_pred ChhHhhHHhcccccccCChHHHHHHhccCCC-------------CC-cchHHHHHHHHHcCCCchHHHHHHHHhHhCCCC
Q 005000 47 NPTVQNKLVTFCCSEKGDMKYACKVFRKIPR-------------PS-VCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVR 112 (720)
Q Consensus 47 ~~~~~~~ll~~~y~~~g~~~~A~~~f~~~~~-------------~~-~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~ 112 (720)
+..+|..+..| +.+..+++-|.-.+..|.. ++ ...--+. .-.+.|..++|..+|++-.+
T Consensus 756 S~~vW~nmA~M-cVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAv--LAieLgMlEeA~~lYr~ckR---- 828 (1416)
T KOG3617|consen 756 SDSVWDNMASM-CVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAV--LAIELGMLEEALILYRQCKR---- 828 (1416)
T ss_pred hhHHHHHHHHH-hhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHH--HHHHHhhHHHHHHHHHHHHH----
Confidence 45789999999 8999999888888776642 22 1111111 12456889999999998876
Q ss_pred CCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---------------
Q 005000 113 PDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSY--------------- 177 (720)
Q Consensus 113 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~--------------- 177 (720)
|-.+=+.|-..|.|++|.++-+.--+..+. .+|.....-+-..++++.|++.|++..
T Consensus 829 -----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~ 900 (1416)
T KOG3617|consen 829 -----YDLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPK 900 (1416)
T ss_pred -----HHHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChH
Confidence 334445667789999998887653332222 233333444445678888888887432
Q ss_pred --------CCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCC
Q 005000 178 --------KDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVP 249 (720)
Q Consensus 178 --------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 249 (720)
.+|...|.-....+-..|+.+.|+.+|...++ |-++++..+-.|+.++|.++-++ ..
T Consensus 901 ~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sg 965 (1416)
T KOG3617|consen 901 QIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SG 965 (1416)
T ss_pred HHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh------cc
Confidence 13455566666666677889999988887654 45666777778999988887654 23
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 005000 250 NLILENALTDMYAACGEMGFALEIFGNIK 278 (720)
Q Consensus 250 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 278 (720)
|....-.|..+|-..|++.+|...|.+..
T Consensus 966 d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 966 DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 66777789999999999999999998754
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.5e-07 Score=91.96 Aligned_cols=146 Identities=12% Similarity=0.081 Sum_probs=79.2
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHH---HHHHHHHHhcCCH
Q 005000 425 AINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY---GCMVDLLGRAGHL 501 (720)
Q Consensus 425 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~---~~li~~~~~~g~~ 501 (720)
...|++++|++++.+- .+.......+..+.+.++++.|.+.++.|. .+..|.... .+.+..+.-.+.+
T Consensus 113 ~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~---~~~eD~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ---QIDEDSILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp CCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH---CCSCCHHHHHHHHHHHHHHHTTTCC
T ss_pred HHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCcHHHHHHHHHHHHHHhCchhH
Confidence 3345555555555431 233344444555556666666666666653 223332211 1222222223356
Q ss_pred HHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCCh-hHHHHHHHHHH
Q 005000 502 NEALEVIKNM--PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRW-DNFRELRQMIL 578 (720)
Q Consensus 502 ~eA~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~ 578 (720)
.+|..+|+++ ...+++.+.+.+..++...|++++|+.+++++++.+|+++.+...++-+....|+. +.+.+.+..++
T Consensus 184 ~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 184 QDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp CHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 6666666666 23356666677777777777777777777777777777777777777777777776 44555666555
Q ss_pred h
Q 005000 579 D 579 (720)
Q Consensus 579 ~ 579 (720)
.
T Consensus 264 ~ 264 (290)
T PF04733_consen 264 Q 264 (290)
T ss_dssp H
T ss_pred H
Confidence 4
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.4e-05 Score=81.92 Aligned_cols=260 Identities=10% Similarity=-0.021 Sum_probs=154.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH---HHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhc
Q 005000 320 IDGYLRVNRFREALTLFREMQTSNIRPDEFTIVS---ILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKC 396 (720)
Q Consensus 320 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~---ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~ 396 (720)
...+...|++++|...+++..+.. +.|...+.. ........+....+.+.... .....+........+...+...
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHc
Confidence 345567788888888888877652 223323321 11111123344444444333 1111122233444566778889
Q ss_pred CCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCh--HHHHHHHHHHHhcCChhhHHH
Q 005000 397 GDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASI-IPDE--VTYVGVLSACTHTGMVDEGRE 470 (720)
Q Consensus 397 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~ 470 (720)
|++++|...+++..+ .+...+..+...+...|++++|+..+++...... .|+. ..+..+...+...|++++|..
T Consensus 128 G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 128 GQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999888753 2566777888888889999999999988876432 1232 234567777888899999999
Q ss_pred HHHHHHHHcCCCccHHHH-H--HHHHHHHhcCCHHHHHHH---HHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHH
Q 005000 471 YFADMTIQHGIEPNEAHY-G--CMVDLLGRAGHLNEALEV---IKNM-PMKP---NSIVWGALLGACRVHRDAEMAEMAA 540 (720)
Q Consensus 471 ~~~~m~~~~~~~p~~~~~-~--~li~~~~~~g~~~eA~~~---~~~~-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~ 540 (720)
++++........+..... + .+...+...|..+.+.+. .... +..| ..........++...|+.+.|...+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L 287 (355)
T cd05804 208 IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLL 287 (355)
T ss_pred HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 998874221111222111 1 233334444433322222 1111 1101 1222235666778889999999998
Q ss_pred HHHHhcC-C--------CCcchHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 541 KQILELD-P--------DNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 541 ~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
+.+.... . .........+.++...|++++|.+.+......+
T Consensus 288 ~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 288 AALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8876532 1 134566778888899999999999988887644
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.69 E-value=9.8e-06 Score=74.05 Aligned_cols=190 Identities=14% Similarity=0.103 Sum_probs=100.1
Q ss_pred HhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhcc---CCCHHHHHHHHHHHHHcCChHHHH
Q 005000 358 CANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML---RKDKFTWTAMIVGLAINGHGDKSL 434 (720)
Q Consensus 358 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 434 (720)
|...|+...|+.-++.+++.. +.+..++..+...|.+.|..+.|.+.|+... ..+-...|....-+|..|++++|.
T Consensus 45 YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~ 123 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAM 123 (250)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHH
Confidence 333344444444444444332 3334455555555666666666666665543 223445555555556666666666
Q ss_pred HHHHHHHHCCCCCC-hHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 005000 435 DMFSQMLRASIIPD-EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM- 511 (720)
Q Consensus 435 ~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~- 511 (720)
..|++....-.-|. ..||..+.-+..+.|+.+.|..+|++..+ ..| .......+.+...+.|++-.|..+++..
T Consensus 124 q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 124 QQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred HHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 66666555321111 13555555555566666666666665542 122 2344455566666666666666666655
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 005000 512 -PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551 (720)
Q Consensus 512 -~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 551 (720)
...++..+.--.+..-...||.+.+-+.-.++....|...
T Consensus 201 ~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 201 QRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred hcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 2234555444445555566666666666666666666543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.3e-05 Score=83.89 Aligned_cols=126 Identities=17% Similarity=0.100 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005000 451 TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN-EAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGAC 527 (720)
Q Consensus 451 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~ 527 (720)
++.-+...+.+.|++++|.++.++.+ ...|+ ++.|..-...|-+.|++++|.+.++.. .+.+ |...-+-....+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI---~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAI---EHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH---hcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 33444555666777777777777665 22444 566666667777777777777777666 3333 444444455556
Q ss_pred HhcCCHHHHHHHHHHHHhcC--CCC-------cchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 528 RVHRDAEMAEMAAKQILELD--PDN-------EAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 528 ~~~g~~~~a~~~~~~~~~~~--p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
.+.|++++|...+......+ |.. .....-.+.+|.+.|++..|.+.+..+.+
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 67777777777766665443 211 11223456777777777777776655543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.2e-06 Score=87.27 Aligned_cols=224 Identities=13% Similarity=0.109 Sum_probs=141.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCC-CChhHhhHHhhhhhh
Q 005000 317 TAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVK-NDIFVGNALIDMYCK 395 (720)
Q Consensus 317 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~-~~~~~~~~li~~y~~ 395 (720)
.-+.+++...|+++.++. +..... .|.......+...+....+-+.+..-+......... .+..+......+|..
T Consensus 39 ~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~ 114 (290)
T PF04733_consen 39 FYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFH 114 (290)
T ss_dssp HHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 345556666666654432 222222 444444433433333323333332222222111211 233333344456777
Q ss_pred cCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh----cCChhhHHHH
Q 005000 396 CGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTH----TGMVDEGREY 471 (720)
Q Consensus 396 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~ 471 (720)
.|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++.. .+.+.+|..+
T Consensus 115 ~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~ 189 (290)
T PF04733_consen 115 EGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQDAFYI 189 (290)
T ss_dssp CCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred cCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 89999998888765 56666777788999999999999999999874 334 444445555432 3469999999
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcCC
Q 005000 472 FADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDA-EMAEMAAKQILELDP 548 (720)
Q Consensus 472 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~p 548 (720)
|+++. ....+++.+.+.+..+....|++++|.+++++. ...| ++.++..++......|+. +.+.+...++....|
T Consensus 190 f~El~--~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 190 FEELS--DKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp HHHHH--CCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred HHHHH--hccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 99986 345678888999999999999999999999886 4455 566777888888888887 778888898888899
Q ss_pred CCc
Q 005000 549 DNE 551 (720)
Q Consensus 549 ~~~ 551 (720)
+.+
T Consensus 268 ~h~ 270 (290)
T PF04733_consen 268 NHP 270 (290)
T ss_dssp TSH
T ss_pred CCh
Confidence 864
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.002 Score=70.85 Aligned_cols=77 Identities=16% Similarity=0.201 Sum_probs=59.7
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHH
Q 005000 498 AGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMI 577 (720)
Q Consensus 498 ~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 577 (720)
-+.++.|.++-++. ..+..|..+..+-.+.|.+.+|++-|-+ .+||+.|...+++..+.|+|++-.+.+...
T Consensus 1088 i~~ldRA~efAe~~---n~p~vWsqlakAQL~~~~v~dAieSyik-----adDps~y~eVi~~a~~~~~~edLv~yL~Ma 1159 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERC---NEPAVWSQLAKAQLQGGLVKDAIESYIK-----ADDPSNYLEVIDVASRTGKYEDLVKYLLMA 1159 (1666)
T ss_pred hhhHHHHHHHHHhh---CChHHHHHHHHHHHhcCchHHHHHHHHh-----cCCcHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 34455555555444 2567899999999999998888877744 467899999999999999999999998877
Q ss_pred HhCCC
Q 005000 578 LDRGI 582 (720)
Q Consensus 578 ~~~~~ 582 (720)
+++.-
T Consensus 1160 Rkk~~ 1164 (1666)
T KOG0985|consen 1160 RKKVR 1164 (1666)
T ss_pred HHhhc
Confidence 76553
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.00052 Score=70.47 Aligned_cols=75 Identities=11% Similarity=0.119 Sum_probs=46.0
Q ss_pred CcchHHHHHHHHHcCCCchHHHHHHHHhHhCCCCC-CcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 005000 79 SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRP-DNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALI 157 (720)
Q Consensus 79 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 157 (720)
|+.+|+.||+-+..+ ..+++.+.+++|... .| ....|..-++.-.+..+++....+|.+.+..-+ +...|...+
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lYl 93 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLYL 93 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHHH
Confidence 666777777765544 667777777777652 33 334566666666666777777777777665443 344455444
Q ss_pred H
Q 005000 158 S 158 (720)
Q Consensus 158 ~ 158 (720)
+
T Consensus 94 ~ 94 (656)
T KOG1914|consen 94 S 94 (656)
T ss_pred H
Confidence 4
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.58 E-value=6.2e-05 Score=82.25 Aligned_cols=422 Identities=12% Similarity=0.051 Sum_probs=245.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCCHhhHHHHHHH
Q 005000 150 VFVQNALISTYCLCGEVDMARGIFDVSYK---DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKG-VLPTSVTIVLVLSA 225 (720)
Q Consensus 150 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~ 225 (720)
...|..|...|+...+...|.+.|+...+ .|..+|......|++..+++.|..+.-..-+.. ...-...|...--.
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 34678888888888888888888886554 456778888888888888888888732221110 00111122233334
Q ss_pred HhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHH---HHHHHHhcCCHHHHH
Q 005000 226 CAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTA---IVTGYINRGQVDMAR 302 (720)
Q Consensus 226 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~ 302 (720)
+...++...+..-++...+..+ -|...|..|..+|.++|++..|.++|.+...-++.+|-. .....+..|.+.+|.
T Consensus 572 yLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHH
Confidence 5577788888888887777643 377788888888988898888888887766544433322 122234566777776
Q ss_pred HHHhhCCCC----------CccchHHHHHHHHhcCCh-------hHHHHHHHHHHHCC--------------------C-
Q 005000 303 QYFDQMPER----------DYVLWTAMIDGYLRVNRF-------REALTLFREMQTSN--------------------I- 344 (720)
Q Consensus 303 ~~f~~~~~~----------~~~~~~~li~~~~~~g~~-------~~A~~~~~~m~~~g--------------------~- 344 (720)
..+..+... -..++-.+...+.-.|-. +++++.|.-..... +
T Consensus 651 d~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e 730 (1238)
T KOG1127|consen 651 DALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEE 730 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhc
Confidence 666554321 011111111112222222 22222222211111 1
Q ss_pred --CCCHHHHHHHHHHHhccCcH---HH-HHHHHHHHHHcCCCCChhHhhHHhhhhhh----cC----CHHHHHHHHHhcc
Q 005000 345 --RPDEFTIVSILTACANLGAL---EL-GEWVKTYIDKNKVKNDIFVGNALIDMYCK----CG----DVEKAQRVFREML 410 (720)
Q Consensus 345 --~p~~~t~~~ll~~~~~~~~~---~~-a~~i~~~~~~~~~~~~~~~~~~li~~y~~----~g----~~~~A~~~~~~~~ 410 (720)
.|+......+..-.-..+.. +. ....-.......+..+...|..|+.-|.+ +| +...|...+...+
T Consensus 731 ~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV 810 (1238)
T KOG1127|consen 731 PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAV 810 (1238)
T ss_pred ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHH
Confidence 22222222222212222221 10 00011111111122234444444444433 22 2345666666654
Q ss_pred ---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCc-cHH
Q 005000 411 ---RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP-NEA 486 (720)
Q Consensus 411 ---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~ 486 (720)
..+...||+|... ...|++.-|...|-+-.... +-+..+|..+.-.|....+++.|...|...+ .+.| +..
T Consensus 811 ~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~q---SLdP~nl~ 885 (1238)
T KOG1127|consen 811 SLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ---SLDPLNLV 885 (1238)
T ss_pred HHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhh---hcCchhhH
Confidence 3577889988766 55677777776666655542 3355688888888889999999999998775 4455 455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHH----------HHHHHHHHhcCCC
Q 005000 487 HYGCMVDLLGRAGHLNEALEVIKNM-------PMKPNSIVWGALLGACRVHRDAEMA----------EMAAKQILELDPD 549 (720)
Q Consensus 487 ~~~~li~~~~~~g~~~eA~~~~~~~-------~~~p~~~~~~~ll~~~~~~g~~~~a----------~~~~~~~~~~~p~ 549 (720)
.|--..-.....|+.-++..+|..- +.-|+..-|.....-...+|+.+.- --+.++.++-.|+
T Consensus 886 ~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~ 965 (1238)
T KOG1127|consen 886 QWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQ 965 (1238)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcc
Confidence 5655555556778888888887652 2335666665555555566665554 4455555667899
Q ss_pred CcchHHHHHhHhhhcCChhHHHHHHHHH
Q 005000 550 NEAVYVLLCNIYAACNRWDNFRELRQMI 577 (720)
Q Consensus 550 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m 577 (720)
+..+|...+......+.+++|.+...+.
T Consensus 966 ~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 966 LCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988876655
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.00061 Score=81.13 Aligned_cols=232 Identities=9% Similarity=0.019 Sum_probs=133.5
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHCCC---CCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHH----cCCCC---Ch
Q 005000 316 WTAMIDGYLRVNRFREALTLFREMQTSNI---RPD--EFTIVSILTACANLGALELGEWVKTYIDK----NKVKN---DI 383 (720)
Q Consensus 316 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll~~~~~~~~~~~a~~i~~~~~~----~~~~~---~~ 383 (720)
++.+...+...|++++|...+.+.....- .+. ..++..+...+...|+++.|...+..... .+... ..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 34555566677888888777777653210 111 22334444556677788777777665543 22111 12
Q ss_pred hHhhHHhhhhhhcCCHHHHHHHHHhccC------C--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CChHHH--
Q 005000 384 FVGNALIDMYCKCGDVEKAQRVFREMLR------K--DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII-PDEVTY-- 452 (720)
Q Consensus 384 ~~~~~li~~y~~~g~~~~A~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~-- 452 (720)
..+..+...+...|++++|...+.+... + ....+..+...+...|+.++|.+.+++....... .....+
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~ 653 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIA 653 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhh
Confidence 2344455566677888888877776522 1 1223444556677788888888888777542111 011111
Q ss_pred ---HHHHHHHHhcCChhhHHHHHHHHHHHcCCCccH----HHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-H
Q 005000 453 ---VGVLSACTHTGMVDEGREYFADMTIQHGIEPNE----AHYGCMVDLLGRAGHLNEALEVIKNM-------PMKPN-S 517 (720)
Q Consensus 453 ---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~g~~~eA~~~~~~~-------~~~p~-~ 517 (720)
...+..+...|+.+.+.+++..... ...... ..+..+..++...|+.++|...+++. +..++ .
T Consensus 654 ~~~~~~~~~~~~~g~~~~A~~~l~~~~~--~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a 731 (903)
T PRK04841 654 NADKVRLIYWQMTGDKEAAANWLRQAPK--PEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLN 731 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhcCC--CCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 0112334457788888888765431 111111 11345666778888888888887765 11221 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005000 518 IVWGALLGACRVHRDAEMAEMAAKQILELDPD 549 (720)
Q Consensus 518 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 549 (720)
.+...+..++...|+.++|...+.+++++...
T Consensus 732 ~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 732 RNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 34555667788888888888888888887543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.5e-06 Score=80.08 Aligned_cols=180 Identities=13% Similarity=0.035 Sum_probs=120.6
Q ss_pred CChhHhhHHhhhhhhcCCHHHHHHHHHhccCC---CH---HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChH----
Q 005000 381 NDIFVGNALIDMYCKCGDVEKAQRVFREMLRK---DK---FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV---- 450 (720)
Q Consensus 381 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---- 450 (720)
.....+..+...|.+.|++++|...|+++... +. ..|..+...+...|++++|+..++++.+.. |+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHH
Confidence 34556667777788888888888888877432 22 356777788888888888888888888743 3221
Q ss_pred HHHHHHHHHHhc--------CChhhHHHHHHHHHHHcCCCccHH-HHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHH
Q 005000 451 TYVGVLSACTHT--------GMVDEGREYFADMTIQHGIEPNEA-HYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWG 521 (720)
Q Consensus 451 t~~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~ 521 (720)
++..+..++... |+.++|.+.|+.+... .|+.. .+..+... +...... .....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~ 170 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKEL 170 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHH
Confidence 344444455543 6677788888777633 33322 22111111 1011100 01122
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCC---cchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 522 ALLGACRVHRDAEMAEMAAKQILELDPDN---EAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 522 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
.+...+...|++++|...++++++..|++ +..+..++.+|.+.|++++|...++.+..+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45567889999999999999999987764 468899999999999999999998887654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.4e-05 Score=88.01 Aligned_cols=322 Identities=11% Similarity=0.021 Sum_probs=207.0
Q ss_pred HHHhcCCHHHHHHHHhhcCC----CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC----CC---c-----cchHHHHHHH
Q 005000 260 MYAACGEMGFALEIFGNIKN----KDVISWTAIVTGYINRGQVDMARQYFDQMPE----RD---Y-----VLWTAMIDGY 323 (720)
Q Consensus 260 ~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~----~~---~-----~~~~~li~~~ 323 (720)
.....|+++.+...++.++. .+..........+...|++++|...+..... .+ . .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 34556777777777777642 2232233344455677888888877765421 11 1 1112233456
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHHHHc----CCC-CChhHhhHHhhhhh
Q 005000 324 LRVNRFREALTLFREMQTSNIRPDE----FTIVSILTACANLGALELGEWVKTYIDKN----KVK-NDIFVGNALIDMYC 394 (720)
Q Consensus 324 ~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~i~~~~~~~----~~~-~~~~~~~~li~~y~ 394 (720)
...|++++|...+++....-...+. .....+...+...|+++.|...+...... +.. ........+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6899999999999988763212222 23344445567789999998888777643 211 11234556677888
Q ss_pred hcCCHHHHHHHHHhccCC-----------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC--hHHHHHHHHHH
Q 005000 395 KCGDVEKAQRVFREMLRK-----------DKFTWTAMIVGLAINGHGDKSLDMFSQMLRA--SIIPD--EVTYVGVLSAC 459 (720)
Q Consensus 395 ~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~--~~t~~~ll~a~ 459 (720)
..|++++|...+++.... ....+..+...+...|++++|...+++.... ...|. ..++..+....
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 999999999988775321 1223445556677789999999999987653 11222 23444556677
Q ss_pred HhcCChhhHHHHHHHHHHHcCCCccHHHH-----HHHHHHHHhcCCHHHHHHHHHhCCCC--CCH----HHHHHHHHHHH
Q 005000 460 THTGMVDEGREYFADMTIQHGIEPNEAHY-----GCMVDLLGRAGHLNEALEVIKNMPMK--PNS----IVWGALLGACR 528 (720)
Q Consensus 460 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-----~~li~~~~~~g~~~eA~~~~~~~~~~--p~~----~~~~~ll~~~~ 528 (720)
...|+.++|.+.+..+.....-......+ ......+...|+.++|.+.+...... ... ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 88999999999998875321111111111 11224456689999999998776211 111 12345667788
Q ss_pred hcCCHHHHHHHHHHHHhcCC------CCcchHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 529 VHRDAEMAEMAAKQILELDP------DNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 529 ~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
..|+.++|...++++++... ....++..++.+|.+.|+.++|.+.+.+..+..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999987521 223467788999999999999999999887644
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.2e-07 Score=59.95 Aligned_cols=33 Identities=39% Similarity=0.620 Sum_probs=27.0
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 005000 145 GFDSSVFVQNALISTYCLCGEVDMARGIFDVSY 177 (720)
Q Consensus 145 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 177 (720)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888888774
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.2e-06 Score=76.11 Aligned_cols=121 Identities=10% Similarity=0.014 Sum_probs=81.0
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 005000 435 DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM-P 512 (720)
Q Consensus 435 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~ 512 (720)
.+|++.++ +.|+. +.....++...|++++|...|+... .+.| +...|..+..++.+.|++++|...|++. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444444 24443 3345556677777777777777765 2233 5666677777777777777777777776 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhh
Q 005000 513 MKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYA 562 (720)
Q Consensus 513 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 562 (720)
..| +...|..+..++...|++++|+..+++++++.|+++..+...+++..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 444 56677777777777888888888888888888887777776666543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.52 E-value=9.9e-05 Score=77.31 Aligned_cols=193 Identities=12% Similarity=0.027 Sum_probs=104.0
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCC-----CH--HHHHHHHHHHHH
Q 005000 354 ILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK-----DK--FTWTAMIVGLAI 426 (720)
Q Consensus 354 ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~--~~~~~li~~~~~ 426 (720)
+...+...|+++.|...+....+.. +.+...+..+...|...|++++|...+++.... +. ..|..+...+..
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 3344455566666666666665543 334455666677777777777777777765431 11 234556677777
Q ss_pred cCChHHHHHHHHHHHHCCC-CCChHHH-H--HHHHHHHhcCChhhHHHH--HHHHHHHcCC-CccHHHHHHHHHHHHhcC
Q 005000 427 NGHGDKSLDMFSQMLRASI-IPDEVTY-V--GVLSACTHTGMVDEGREY--FADMTIQHGI-EPNEAHYGCMVDLLGRAG 499 (720)
Q Consensus 427 ~g~~~~A~~l~~~m~~~g~-~p~~~t~-~--~ll~a~~~~g~~~~a~~~--~~~m~~~~~~-~p~~~~~~~li~~~~~~g 499 (720)
.|+.++|+.++++...... .+..... + .++.-+...|..+.+.+. .........- ..........+.++...|
T Consensus 199 ~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 278 (355)
T cd05804 199 RGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAG 278 (355)
T ss_pred CCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCC
Confidence 8888888888877754322 1111111 1 233333444544444333 1111101100 011112224566677888
Q ss_pred CHHHHHHHHHhCC--CCC---C------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005000 500 HLNEALEVIKNMP--MKP---N------SIVWGALLGACRVHRDAEMAEMAAKQILELD 547 (720)
Q Consensus 500 ~~~eA~~~~~~~~--~~p---~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 547 (720)
+.++|..+++.+. .+. . ....-...-++...|+.+.|.+.+..++.+-
T Consensus 279 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 279 DKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred CHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8888888887761 111 1 1111222244678899999999888887653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=7e-06 Score=77.09 Aligned_cols=146 Identities=12% Similarity=0.111 Sum_probs=107.6
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 005000 422 VGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHL 501 (720)
Q Consensus 422 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 501 (720)
..|...|+++......+++.. |. . .+...++.+++...++...+ .-+.+...|..+...|...|++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCH
Confidence 456777777665444322221 11 0 12225566677777766652 2245778888899999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCC--HHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHH
Q 005000 502 NEALEVIKNM-PMKP-NSIVWGALLGA-CRVHRD--AEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQM 576 (720)
Q Consensus 502 ~eA~~~~~~~-~~~p-~~~~~~~ll~~-~~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 576 (720)
++|...+++. ...| +...+..+..+ +...|+ .++|..+++++++.+|+++.++..++..+.+.|++++|...+++
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999887 5566 67777777776 467676 58999999999999999999999999999999999999999999
Q ss_pred HHhCC
Q 005000 577 ILDRG 581 (720)
Q Consensus 577 m~~~~ 581 (720)
+.+..
T Consensus 170 aL~l~ 174 (198)
T PRK10370 170 VLDLN 174 (198)
T ss_pred HHhhC
Confidence 87643
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00024 Score=73.03 Aligned_cols=437 Identities=12% Similarity=0.024 Sum_probs=239.8
Q ss_pred HHHHcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCh
Q 005000 88 KGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSS-VFVQNALISTYCLCGEV 166 (720)
Q Consensus 88 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~ 166 (720)
.+....|+++.|+.+|-+.+... ++|.+-|+.-..+++..|+++.|.+=-...++. .|+ ..-|+.+..+..-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 34567889999999998888765 348888888889999999998888766666653 355 34577777777778899
Q ss_pred HHHHHHHhcCCCCC---eeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHH-----HHhcCCCchHHHHH
Q 005000 167 DMARGIFDVSYKDD---VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLS-----ACAKLKDLDVGKRA 238 (720)
Q Consensus 167 ~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-----~~~~~~~~~~a~~~ 238 (720)
++|..-|.+..+.| ...++-+..++ ..+.+. |... -+...+..+.. ..... ..-..+
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~----~~~~~~-----~~~~---~~p~~~~~l~~~p~t~~~~~~---~~~~~~ 151 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAY----LEDYAA-----DQLF---TKPYFHEKLANLPLTNYSLSD---PAYVKI 151 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhh----hHHHHh-----hhhc---cCcHHHHHhhcChhhhhhhcc---HHHHHH
Confidence 99999988776543 34444444444 111111 1110 01111111110 00000 011111
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHH--hhCCCC-----
Q 005000 239 HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYF--DQMPER----- 311 (720)
Q Consensus 239 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f--~~~~~~----- 311 (720)
+..+.+. |. =+..|..-.++..|.-++...... .+...|....+...- ..+..+
T Consensus 152 l~~~~~~---p~------~l~~~l~d~r~m~a~~~l~~~~~~----------~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 212 (539)
T KOG0548|consen 152 LEIIQKN---PT------SLKLYLNDPRLMKADGQLKGVDEL----------LFYASGIEILASMAEPCKQEHNGFPIIE 212 (539)
T ss_pred HHHhhcC---cH------hhhcccccHHHHHHHHHHhcCccc----------cccccccccCCCCCCcccccCCCCCccc
Confidence 1111111 10 011122211122222222111100 000000000000000 000000
Q ss_pred ----------CccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCC
Q 005000 312 ----------DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKN 381 (720)
Q Consensus 312 ----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~ 381 (720)
-..-...+.+...+..+++.|++-+....+.. -+..-++..-.++...|........-...++.|-..
T Consensus 213 d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~ 290 (539)
T KOG0548|consen 213 DNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL 290 (539)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH
Confidence 00123445556666666777777776666543 233333344444555555555544444433333111
Q ss_pred C------hhHhhHHhhhhhhcCCHHHHHHHHHhccCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChH-HH
Q 005000 382 D------IFVGNALIDMYCKCGDVEKAQRVFREMLRK--DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV-TY 452 (720)
Q Consensus 382 ~------~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~ 452 (720)
- ......+..+|.+.++++.|...|.+.... +... ..+....++++...+...- +.|+.. -.
T Consensus 291 rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~-------ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~ 361 (539)
T KOG0548|consen 291 RADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL-------LSKLKEAEKALKEAERKAY--INPEKAEEE 361 (539)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH-------HHHHHHHHHHHHHHHHHHh--hChhHHHHH
Confidence 0 011222445788889999999999886422 2111 1223344555555444433 344432 12
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc
Q 005000 453 VGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN-SIVWGALLGACRVH 530 (720)
Q Consensus 453 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~ 530 (720)
..-...+.+.|++..|...|.++++. . +-|...|....-+|.+.|.+.+|++-.+.. ...|+ ...|.-=..++...
T Consensus 362 r~kGne~Fk~gdy~~Av~~YteAIkr-~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~m 439 (539)
T KOG0548|consen 362 REKGNEAFKKGDYPEAVKHYTEAIKR-D-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAM 439 (539)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhc-C-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 22356788999999999999998732 2 557889999999999999999999877765 45564 44565566677788
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHH
Q 005000 531 RDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELR 574 (720)
Q Consensus 531 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 574 (720)
.+++.|.+.|++.++.+|++......+...+..+...+...++.
T Consensus 440 k~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~ 483 (539)
T KOG0548|consen 440 KEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETK 483 (539)
T ss_pred HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHH
Confidence 89999999999999999998887777777776543333344443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.4e-05 Score=90.09 Aligned_cols=200 Identities=15% Similarity=0.156 Sum_probs=168.6
Q ss_pred CCChhHhhHHhhhhhhcCCHHHHHHHHHhccCC--------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHH
Q 005000 380 KNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK--------DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451 (720)
Q Consensus 380 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 451 (720)
+.+...|-..+......+++++|++++++.... -...|.++++.....|.-+...++|+++.+.- . ....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d-~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D-AYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c-hHHH
Confidence 455677888888889999999999999988532 24579999988888898889999999998742 1 2356
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHH
Q 005000 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP---NSIVWGALLGAC 527 (720)
Q Consensus 452 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p---~~~~~~~ll~~~ 527 (720)
|..|+..|.+.+..++|.++++.|.++++ -....|..+++.+.+..+-++|..+++++ ..-| ......-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88899999999999999999999998777 66788999999999999999999999886 2223 344555666667
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCCCc
Q 005000 528 RVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIK 583 (720)
Q Consensus 528 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 583 (720)
.++|+.+.+..+|+..+.-.|.....|..++++-.+.|..+.++.+|+++...++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 89999999999999999999999999999999999999999999999999887764
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.4e-06 Score=75.79 Aligned_cols=107 Identities=13% Similarity=0.020 Sum_probs=92.2
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005000 470 EYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELD 547 (720)
Q Consensus 470 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 547 (720)
.+++... .+.|+ .+..+...+...|++++|.+.|+.. ...| +...|..+..++...|++++|...++++++++
T Consensus 14 ~~~~~al---~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLL---SVDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHH---HcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3454443 33455 3556788999999999999999997 5556 78899999999999999999999999999999
Q ss_pred CCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 548 PDNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 548 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
|+++.++..++.++...|++++|.+.++...+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999987643
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.5e-06 Score=72.15 Aligned_cols=96 Identities=11% Similarity=0.045 Sum_probs=85.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHh
Q 005000 484 NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIY 561 (720)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 561 (720)
+.+..-.+...+...|++++|..+|+-. .+.| +..-|..|...|...|++++|+..|.++..++|+|+.++..++.+|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3445556677788999999999999987 5666 6778999999999999999999999999999999999999999999
Q ss_pred hhcCChhHHHHHHHHHHh
Q 005000 562 AACNRWDNFRELRQMILD 579 (720)
Q Consensus 562 ~~~g~~~~a~~~~~~m~~ 579 (720)
...|+.+.|++-|+....
T Consensus 114 L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 114 LACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999999998875
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.6e-07 Score=57.24 Aligned_cols=32 Identities=34% Similarity=0.678 Sum_probs=23.2
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 005000 480 GIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511 (720)
Q Consensus 480 ~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~ 511 (720)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56777777777777777777777777777766
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.6e-05 Score=84.24 Aligned_cols=210 Identities=16% Similarity=0.145 Sum_probs=111.2
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 005000 288 IVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG 367 (720)
Q Consensus 288 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 367 (720)
+...+.+.|-..+|..+|+++ ..|..+|.+|...|+..+|..+..+-.+. +
T Consensus 404 laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~---------------------- 454 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--D---------------------- 454 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--C----------------------
Confidence 334444555555555555543 56777777788877777777776666552 3
Q ss_pred HHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 005000 368 EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP 447 (720)
Q Consensus 368 ~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 447 (720)
|+...|..|.+......-+++|.++++....+--..|+.. ...+++++++.+.|+.-.+.. .-
T Consensus 455 -------------~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~---~~~~~~fs~~~~hle~sl~~n-pl 517 (777)
T KOG1128|consen 455 -------------PDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALL---ILSNKDFSEADKHLERSLEIN-PL 517 (777)
T ss_pred -------------CcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccc---cccchhHHHHHHHHHHHhhcC-cc
Confidence 4444444555544444445666666655432211111111 122466666666666554421 11
Q ss_pred ChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHH
Q 005000 448 DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMK-PNSIVWGALL 524 (720)
Q Consensus 448 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~-p~~~~~~~ll 524 (720)
-..||-....+..+.++++.|.+.|..-. ...| +...||.+-.+|.+.|+..+|...+++. +.+ .+...|...+
T Consensus 518 q~~~wf~~G~~ALqlek~q~av~aF~rcv---tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENym 594 (777)
T KOG1128|consen 518 QLGTWFGLGCAALQLEKEQAAVKAFHRCV---TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYM 594 (777)
T ss_pred chhHHHhccHHHHHHhhhHHHHHHHHHHh---hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechh
Confidence 22355555555556666666666665543 2333 3455555555555555555555555554 111 1334455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc
Q 005000 525 GACRVHRDAEMAEMAAKQILEL 546 (720)
Q Consensus 525 ~~~~~~g~~~~a~~~~~~~~~~ 546 (720)
-...+-|.++.|++++.+++++
T Consensus 595 lvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 595 LVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred hhhhhcccHHHHHHHHHHHHHh
Confidence 5556666666666666666554
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.0001 Score=74.45 Aligned_cols=176 Identities=13% Similarity=0.111 Sum_probs=113.4
Q ss_pred hhHHhhhhhhcC-CHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 005000 386 GNALIDMYCKCG-DVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHG--DKSLDMFSQMLRASIIPDEVTYVGVLSAC 459 (720)
Q Consensus 386 ~~~li~~y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 459 (720)
|+....++.+.| ++++++..++++.+ ++..+|+.....+.+.|+. ++++.+++++++... -|..+|.....++
T Consensus 74 W~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l 152 (320)
T PLN02789 74 WHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVL 152 (320)
T ss_pred HHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 333333334444 45667777666542 2444566554444455542 566777777776432 2446777777777
Q ss_pred HhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc---CC----HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 005000 460 THTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRA---GH----LNEALEVIKNM-PMKP-NSIVWGALLGACRVH 530 (720)
Q Consensus 460 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---g~----~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~ 530 (720)
.+.|+++++++.++++.+. + .-+...|+....++.+. |. .+++.++..++ ...| |...|+.+.+.+...
T Consensus 153 ~~l~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~ 230 (320)
T PLN02789 153 RTLGGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDD 230 (320)
T ss_pred HHhhhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcC
Confidence 7777888888888877632 2 23455565555555443 22 24566666444 5566 678899998888774
Q ss_pred ----CCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhc
Q 005000 531 ----RDAEMAEMAAKQILELDPDNEAVYVLLCNIYAAC 564 (720)
Q Consensus 531 ----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 564 (720)
++..+|...+.+++..+|+++.++..|+++|...
T Consensus 231 ~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 231 KEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred CcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 3456788999999999999999999999999864
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.0029 Score=61.38 Aligned_cols=234 Identities=13% Similarity=0.056 Sum_probs=135.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCC
Q 005000 319 MIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGD 398 (720)
Q Consensus 319 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~ 398 (720)
.+..+...|+...|+.....+++.. +.|...+..-..+|...|.+..|..=+..+.+..- .+....--+-..+.+.|+
T Consensus 161 ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd 238 (504)
T KOG0624|consen 161 QLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGD 238 (504)
T ss_pred HHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhh
Confidence 3444556677777777777776642 44555666666667777777777665555555442 234444456677778888
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 005000 399 VEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQ 478 (720)
Q Consensus 399 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 478 (720)
.+.++...++..+-|+..-. +|.......+..+.++.|.+ ....+.+.++.+-.+...
T Consensus 239 ~~~sL~~iRECLKldpdHK~----Cf~~YKklkKv~K~les~e~----------------~ie~~~~t~cle~ge~vl-- 296 (504)
T KOG0624|consen 239 AENSLKEIRECLKLDPDHKL----CFPFYKKLKKVVKSLESAEQ----------------AIEEKHWTECLEAGEKVL-- 296 (504)
T ss_pred HHHHHHHHHHHHccCcchhh----HHHHHHHHHHHHHHHHHHHH----------------HHhhhhHHHHHHHHHHHH--
Confidence 88888888877544332110 11111112222222222222 122334444444444433
Q ss_pred cCCCcc-----HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 005000 479 HGIEPN-----EAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN-SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551 (720)
Q Consensus 479 ~~~~p~-----~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 551 (720)
...|. ...+..+-..|...|++-+|++...+. .+.|| +.++---..+|.....++.|+.-|+++.+.+|+|.
T Consensus 297 -k~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 297 -KNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred -hcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 12333 122334455667778888888877775 56664 67777777888888899999999999999999875
Q ss_pred chHHHHHhHhhhcCChhHHHHHHHHHHhCCCccCCc
Q 005000 552 AVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPG 587 (720)
Q Consensus 552 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 587 (720)
.+-.- .+.|.++.+..-++..-+..|
T Consensus 376 ~~reG----------le~Akrlkkqs~kRDYYKILG 401 (504)
T KOG0624|consen 376 RAREG----------LERAKRLKKQSGKRDYYKILG 401 (504)
T ss_pred HHHHH----------HHHHHHHHHHhccchHHHHhh
Confidence 43221 355666655555444433333
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.5e-05 Score=84.20 Aligned_cols=137 Identities=10% Similarity=0.060 Sum_probs=98.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCc-cHHHHHH
Q 005000 413 DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDE-VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP-NEAHYGC 490 (720)
Q Consensus 413 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 490 (720)
++..+-.|.....+.|..++|+.+++...+. .||. .....+..++.+.+.+++|....++.. ...| +......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l---~~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYF---SGGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh---hcCCCCHHHHHH
Confidence 4666777777777888888888888887773 6666 356667777788888888888887765 2334 4566667
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchH
Q 005000 491 MVDLLGRAGHLNEALEVIKNMP-MKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVY 554 (720)
Q Consensus 491 li~~~~~~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 554 (720)
+..++.+.|++++|.++|++.- ..| +..+|.++..++...|+.++|..+|+++++...+-...|
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence 7777888888888888888772 334 367777788888888888888888888887765543443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.6e-05 Score=71.99 Aligned_cols=134 Identities=16% Similarity=0.118 Sum_probs=101.0
Q ss_pred CCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHH
Q 005000 446 IPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM--PMKPNSIVWGAL 523 (720)
Q Consensus 446 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~--~~~p~~~~~~~l 523 (720)
.|+......+-.++...|+-+....+..... .....+......++....+.|++.+|...+.+. .-+||...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~--~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSA--IAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhh--ccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 4443322556667777788777777776653 223335555666888888888888888888887 344578888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 524 LGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 524 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
.-+|-+.|+++.|...+.+++++.|+++.++..|+..|.-.|++++|..++......+
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 8888888888888888888888888888888888888888888888888887776544
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.32 E-value=5.3e-05 Score=74.04 Aligned_cols=183 Identities=12% Similarity=0.065 Sum_probs=127.7
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCC-C-ChhHhhHHhhhhhhcCCHHHHHHHHHhccCCC---H---HHH
Q 005000 346 PDEFTIVSILTACANLGALELGEWVKTYIDKNKVK-N-DIFVGNALIDMYCKCGDVEKAQRVFREMLRKD---K---FTW 417 (720)
Q Consensus 346 p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~-~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~---~~~ 417 (720)
.....+......+...|+++.|...+..+.+.... + ...++..+...|.+.|++++|...|+.+.+.+ . ..+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34566777777888999999999999998875421 1 12466778899999999999999999985431 2 245
Q ss_pred HHHHHHHHHc--------CChHHHHHHHHHHHHCCCCCChH-HHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHH
Q 005000 418 TAMIVGLAIN--------GHGDKSLDMFSQMLRASIIPDEV-TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHY 488 (720)
Q Consensus 418 ~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 488 (720)
..+..++.+. |+.++|++.|+++... .|+.. ....+... .. . .... ....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~------~~~~---------~~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---L------RNRL---------AGKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---H------HHHH---------HHHH
Confidence 5556666654 7889999999999875 45542 22211111 00 0 0000 0112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005000 489 GCMVDLLGRAGHLNEALEVIKNM----PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPD 549 (720)
Q Consensus 489 ~~li~~~~~~g~~~eA~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 549 (720)
..+.+.|.+.|++++|...+++. +-.| ....|..+..++...|++++|...++.+....|+
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35667889999999999998887 2233 3568889999999999999999988887766553
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=6.3e-05 Score=70.65 Aligned_cols=154 Identities=11% Similarity=0.109 Sum_probs=112.2
Q ss_pred hhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHH
Q 005000 390 IDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGR 469 (720)
Q Consensus 390 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 469 (720)
+-.|.+.|+++.+....+.+..+. ..+...++.++++..+++..+.. +.|...|..+...+...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456777777776654443322211 01122566677787888777753 345578888888899999999999
Q ss_pred HHHHHHHHHcCCCc-cHHHHHHHHHH-HHhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005000 470 EYFADMTIQHGIEP-NEAHYGCMVDL-LGRAGH--LNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQI 543 (720)
Q Consensus 470 ~~~~~m~~~~~~~p-~~~~~~~li~~-~~~~g~--~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 543 (720)
..|++.. .+.| +...+..+..+ |.+.|+ .++|.+++++. ...| +...+..+...+...|++++|+..++++
T Consensus 94 ~a~~~Al---~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQAL---QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999876 2344 67777788876 467777 58999999987 5566 6778888888999999999999999999
Q ss_pred HhcCCCCcchHH
Q 005000 544 LELDPDNEAVYV 555 (720)
Q Consensus 544 ~~~~p~~~~~~~ 555 (720)
+++.|.+..-+.
T Consensus 171 L~l~~~~~~r~~ 182 (198)
T PRK10370 171 LDLNSPRVNRTQ 182 (198)
T ss_pred HhhCCCCccHHH
Confidence 999988765443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=2e-05 Score=83.40 Aligned_cols=189 Identities=16% Similarity=0.167 Sum_probs=144.6
Q ss_pred CCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 005000 378 KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLS 457 (720)
Q Consensus 378 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 457 (720)
+++|-...-..+.+.+.++|-...|..+|++. ..|.-.|-+|...|+..+|..+..+-.+ -+||..-|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 45566666677889999999999999999976 5788889999999999999999988887 4788889998888
Q ss_pred HHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 005000 458 ACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEM 535 (720)
Q Consensus 458 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 535 (720)
......-+++|.++++....+ .-..+.....+.++++++.+.++.. .+.| ...+|-.+..+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 887777788888888765422 1111222233467778887777764 5555 56677777777777888888
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 536 AEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 536 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
|.+.|.+.+.++|++...+++++.+|.+.|+-.+|...+++..+-.
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 8888888888888888888888888888888888888777776655
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.5e-05 Score=79.63 Aligned_cols=221 Identities=13% Similarity=0.086 Sum_probs=136.0
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHH
Q 005000 324 LRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQ 403 (720)
Q Consensus 324 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 403 (720)
.++|+..+|.-.|+..++.. +-+...|..|-..-+..++-..|...+....+.. +.+..+.-+|.-.|...|.-.+|.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHH
Confidence 44455555555555544432 2223333333333444444444444444444433 334445555555566566555666
Q ss_pred HHHHhccCCC-HHHHHHHH---------HHHHHcCChHHHHHHHHHHHH-CCCCCChHHHHHHHHHHHhcCChhhHHHHH
Q 005000 404 RVFREMLRKD-KFTWTAMI---------VGLAINGHGDKSLDMFSQMLR-ASIIPDEVTYVGVLSACTHTGMVDEGREYF 472 (720)
Q Consensus 404 ~~~~~~~~~~-~~~~~~li---------~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 472 (720)
+.++.-.... ...|...- ..+..........++|-++.. .+.++|......|.-.|--.|.+++|...|
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 6555442110 00000000 011111122344455555544 443456666666666788889999999999
Q ss_pred HHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005000 473 ADMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN-SIVWGALLGACRVHRDAEMAEMAAKQILELDPD 549 (720)
Q Consensus 473 ~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 549 (720)
+.+. .++| |...||-|...++...+.+||...|+++ .++|. +.++..|.-+|...|.+++|...+-.++.+.+.
T Consensus 454 ~~AL---~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 454 EAAL---QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HHHH---hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 9886 4566 5778999999999999999999999998 78897 568899999999999999999999999987654
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00019 Score=67.95 Aligned_cols=307 Identities=12% Similarity=0.094 Sum_probs=175.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCC---CchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCc--cchHH-HHHHHHhcC
Q 005000 254 ENALTDMYAACGEMGFALEIFGNIKNK---DVISWTAIVTGYINRGQVDMARQYFDQMPERDY--VLWTA-MIDGYLRVN 327 (720)
Q Consensus 254 ~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~--~~~~~-li~~~~~~g 327 (720)
+++.+.-+.+..++++|.+++..-.++ +....+.+...|....++..|-..++++...-+ .-|.. -...+.+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 445555567777888888887766553 445566777778888888888888877654322 12221 234556677
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH--hccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHH
Q 005000 328 RFREALTLFREMQTSNIRPDEFTIVSILTAC--ANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRV 405 (720)
Q Consensus 328 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 405 (720)
.+.+|+++...|... |+...-..-+.+. ...+++..++.+..+... +.+..+.+...-...+.|+++.|.+-
T Consensus 93 i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~---en~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS---ENEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred ccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccC---CCccchhccchheeeccccHHHHHHH
Confidence 788888887777643 2222211112221 233444444544444322 12333334444445566777777777
Q ss_pred HHhccCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCC
Q 005000 406 FREMLRK----DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGI 481 (720)
Q Consensus 406 ~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 481 (720)
|+...+- ....||.-+ ++.+.|++..|+++..+.++.|++-....-..+..--.....+.....+....
T Consensus 167 FqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa------ 239 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA------ 239 (459)
T ss_pred HHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH------
Confidence 7666432 344555443 33445666777777777776665422211000000000000000111111111
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 005000 482 EPNEAHYGCMVDLLGRAGHLNEALEVIKNMP----MKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLL 557 (720)
Q Consensus 482 ~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 557 (720)
=++.+|.-...+.+.|+++.|.+.+..|| .+.|++|...+.-. -..+++..+.+-++-+++++|-.+.++..+
T Consensus 240 --l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANl 316 (459)
T KOG4340|consen 240 --LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANL 316 (459)
T ss_pred --HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHH
Confidence 02234444455778999999999999994 33577887665432 234566677777888889999888999999
Q ss_pred HhHhhhcCChhHHHHHHHH
Q 005000 558 CNIYAACNRWDNFRELRQM 576 (720)
Q Consensus 558 ~~~~~~~g~~~~a~~~~~~ 576 (720)
.-+|++..-++-|..++-+
T Consensus 317 LllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 317 LLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHhhhHHHhHHHHHHhh
Confidence 9999999999988887643
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00041 Score=70.74 Aligned_cols=177 Identities=17% Similarity=0.084 Sum_probs=118.2
Q ss_pred CCHHHHHHHHHhccCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHH
Q 005000 397 GDVEKAQRVFREMLRK------DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGRE 470 (720)
Q Consensus 397 g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 470 (720)
.++.++...-+.++.. +.......+.+.........+..++.+-.+. .-...-| ...-.....|.+++|+.
T Consensus 251 ~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~Y-G~A~~~~~~~~~d~A~~ 327 (484)
T COG4783 251 ERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQY-GRALQTYLAGQYDEALK 327 (484)
T ss_pred hHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHH-HHHHHHHHhcccchHHH
Confidence 4556666666666432 4444555555433332222232222222221 1111222 23335567788888998
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 005000 471 YFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN-SIVWGALLGACRVHRDAEMAEMAAKQILELDP 548 (720)
Q Consensus 471 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 548 (720)
.+..+.. ..+-|+..+....+.+.+.|+.++|.+.++++ ...|+ ...+-++..++.+.|++.+|+..+++....+|
T Consensus 328 ~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p 405 (484)
T COG4783 328 LLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP 405 (484)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence 8888763 33445666667788889999999999998887 56675 67778888889999999999999999888899
Q ss_pred CCcchHHHHHhHhhhcCChhHHHHHHHHHH
Q 005000 549 DNEAVYVLLCNIYAACNRWDNFRELRQMIL 578 (720)
Q Consensus 549 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 578 (720)
+|+..|..|+.+|..+|+..++...+.++.
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 999999999888888888888777766554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00011 Score=68.93 Aligned_cols=154 Identities=14% Similarity=0.111 Sum_probs=100.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 005000 418 TAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR 497 (720)
Q Consensus 418 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 497 (720)
...-..+...|+.+.+..+....... ..-|.......+......|++.+|...|.+.. ..-++|...|+.+.-.|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~--~l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA--RLAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHh--ccCCCChhhhhHHHHHHHH
Confidence 33445556666666666665554332 11122333345666667777777777777664 3445667777777777777
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHH
Q 005000 498 AGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELR 574 (720)
Q Consensus 498 ~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 574 (720)
.|++++|..-|.+. .+.| ++...+.|...+.-.|+.+.|+.++..+....+.+..+-..|+-+....|++++|+.+.
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 77777777776665 4444 45666777777777777777777777777777777777777777777777777777653
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00018 Score=81.53 Aligned_cols=220 Identities=15% Similarity=0.125 Sum_probs=172.5
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCC--------CchhHHHHHHHHHhcCCHHHHHHHHhhCCCC-C-ccchH
Q 005000 248 VPNLILENALTDMYAACGEMGFALEIFGNIKNK--------DVISWTAIVTGYINRGQVDMARQYFDQMPER-D-YVLWT 317 (720)
Q Consensus 248 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~-~~~~~ 317 (720)
+-+...|-..|......+++++|++++++.... -...|.++++.-..-|.-+...++|++..+- | ...|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 335667777888888888888888888887642 2356888888888888888888888887654 3 34688
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCC-CChhHhhHHhhhhhhc
Q 005000 318 AMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVK-NDIFVGNALIDMYCKC 396 (720)
Q Consensus 318 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~-~~~~~~~~li~~y~~~ 396 (720)
.|...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+...-+.|..++..+.+.-.. ..+....-.+.+-.++
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 8999999999999999999999876 3456677888888888988889999999888875322 2455666777888899
Q ss_pred CCHHHHHHHHHhccCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHHhcCChhhH
Q 005000 397 GDVEKAQRVFREMLRK---DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDE--VTYVGVLSACTHTGMVDEG 468 (720)
Q Consensus 397 g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a 468 (720)
|+.+.++.+|+..... -...|+..|..-.++|+.+.+..+|++....++.|-. ..|...|..-...|+-+..
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 9999999999998643 5678999999999999999999999999999988876 3555555544455554433
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.7e-05 Score=69.86 Aligned_cols=96 Identities=21% Similarity=0.267 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhh
Q 005000 485 EAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYA 562 (720)
Q Consensus 485 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 562 (720)
......+...+.+.|++++|.+.++.. ...| +...|..+...+...|++++|...++++++.+|+++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 344556677777888888888888776 3344 56777788888888888888888888888888888888888888888
Q ss_pred hcCChhHHHHHHHHHHhC
Q 005000 563 ACNRWDNFRELRQMILDR 580 (720)
Q Consensus 563 ~~g~~~~a~~~~~~m~~~ 580 (720)
..|++++|.+.++...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 888888888888877653
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.15 E-value=3e-06 Score=54.40 Aligned_cols=35 Identities=23% Similarity=0.534 Sum_probs=32.5
Q ss_pred chHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCc
Q 005000 81 CLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDN 115 (720)
Q Consensus 81 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 115 (720)
++||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00043 Score=77.25 Aligned_cols=143 Identities=10% Similarity=0.048 Sum_probs=115.1
Q ss_pred CCCChhHhhHHhhhhhhcCCHHHHHHHHHhcc--CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChH-HHHH
Q 005000 379 VKNDIFVGNALIDMYCKCGDVEKAQRVFREML--RK-DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV-TYVG 454 (720)
Q Consensus 379 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ 454 (720)
...+...+..|.....+.|.+++|..+++... .| +...+..++..+.+.+++++|+..+++.... .|+.. ....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 45667888889999999999999999999885 34 5667888889999999999999999999985 56664 5555
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 005000 455 VLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM--PMKPNSIVWGALLG 525 (720)
Q Consensus 455 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~--~~~p~~~~~~~ll~ 525 (720)
+..++...|.+++|..+|+++.. ...-+...+..+..++-..|+.++|...|++. ...|....|+.++.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 66678899999999999999873 33334778888999999999999999999987 34455566665553
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00032 Score=70.89 Aligned_cols=187 Identities=11% Similarity=0.085 Sum_probs=134.2
Q ss_pred HhhhhhhcCCHHHHHHHHHhccCC---CHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC
Q 005000 389 LIDMYCKCGDVEKAQRVFREMLRK---DKFTWTAMIVGLAING-HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGM 464 (720)
Q Consensus 389 li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 464 (720)
+-..+.+.++.++|+....++.+. +..+|+.-...+...| +.++++..++++.+...+ +..+|......+.+.|.
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCc
Confidence 334455567888888888887644 4456666666666667 579999999999986432 33456655555566665
Q ss_pred h--hhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CC----H
Q 005000 465 V--DEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVH---RD----A 533 (720)
Q Consensus 465 ~--~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~----~ 533 (720)
. +++..+++.+.+. -+-+...|+...-++.+.|++++|++.++++ ...| |...|+.......+. |. .
T Consensus 122 ~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 122 DAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred hhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccH
Confidence 3 6778888877622 2336778888888899999999999999998 4444 778888877666554 22 3
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHhHhhhc----CChhHHHHHHHHHH
Q 005000 534 EMAEMAAKQILELDPDNEAVYVLLCNIYAAC----NRWDNFRELRQMIL 578 (720)
Q Consensus 534 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~a~~~~~~m~ 578 (720)
+.......++++++|+|.+++..+..++... ++..+|.+......
T Consensus 200 e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~ 248 (320)
T PLN02789 200 DSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL 248 (320)
T ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhh
Confidence 5677888899999999999999999999873 34455666655543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00052 Score=77.34 Aligned_cols=148 Identities=11% Similarity=0.109 Sum_probs=73.4
Q ss_pred HhhHHhhhhhhcCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 005000 385 VGNALIDMYCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTH 461 (720)
Q Consensus 385 ~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 461 (720)
++..|..+|-+.|+.++|..+++++.+ .|+...|.+...|+.. +.++|++++.+.+.. +..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~ 181 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIK 181 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHh
Confidence 444555556666666666666655532 2445555555555555 555565555554432 333
Q ss_pred cCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005000 462 TGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAK 541 (720)
Q Consensus 462 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 541 (720)
..++..+.++|..+.. ...-+...+-.+.... ....+..--..++--+-.-|...++++.+..+++
T Consensus 182 ~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki------------~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 182 KKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKV------------LGHREFTRLVGLLEDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred hhcchHHHHHHHHHHh--cCcccchHHHHHHHHH------------HhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 3455555555555541 1111111111111111 1111112223344444455666666777777777
Q ss_pred HHHhcCCCCcchHHHHHhHhh
Q 005000 542 QILELDPDNEAVYVLLCNIYA 562 (720)
Q Consensus 542 ~~~~~~p~~~~~~~~l~~~~~ 562 (720)
.+++.+|.|..+..-++..|.
T Consensus 248 ~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 248 KILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHhcCCcchhhHHHHHHHHH
Confidence 777777776666666666655
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.5e-06 Score=53.60 Aligned_cols=35 Identities=31% Similarity=0.603 Sum_probs=32.6
Q ss_pred eeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH
Q 005000 182 VTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTS 216 (720)
Q Consensus 182 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 216 (720)
++||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00067 Score=69.23 Aligned_cols=147 Identities=16% Similarity=0.164 Sum_probs=117.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHH-HHHHHhcCChhhHHHHHHHHHHHcCCCcc-HHHHHH
Q 005000 413 DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGV-LSACTHTGMVDEGREYFADMTIQHGIEPN-EAHYGC 490 (720)
Q Consensus 413 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 490 (720)
....+......+...|+.++|+..++.++.. .||...|..+ ...+...++.++|.+.++.+. ...|+ ....-.
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal---~l~P~~~~l~~~ 379 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKAL---ALDPNSPLLQLN 379 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCccHHHHH
Confidence 3444444455566789999999999998875 6777666554 457889999999999999986 44666 556667
Q ss_pred HHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChh
Q 005000 491 MVDLLGRAGHLNEALEVIKNM--PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWD 568 (720)
Q Consensus 491 li~~~~~~g~~~eA~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 568 (720)
+.++|.+.|++.+|..+++.. ..+.|+..|..|..+|...|+..++..+. +..|...|+|+
T Consensus 380 ~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~ 442 (484)
T COG4783 380 LAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLE 442 (484)
T ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHH
Confidence 889999999999999999987 33348899999999999999988776654 45677889999
Q ss_pred HHHHHHHHHHhCC
Q 005000 569 NFRELRQMILDRG 581 (720)
Q Consensus 569 ~a~~~~~~m~~~~ 581 (720)
+|.......+++.
T Consensus 443 ~A~~~l~~A~~~~ 455 (484)
T COG4783 443 QAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999888765
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.07 E-value=6.1e-05 Score=77.54 Aligned_cols=122 Identities=16% Similarity=0.136 Sum_probs=99.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 005000 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRV 529 (720)
Q Consensus 452 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~ 529 (720)
..+++..+...++++.|..+|+++.+. .|+. ...++..|...++-.+|.+++++. ...| +...+......|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 345666677778888888888888632 3553 445777787888888888888876 3334 66677777788999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHH
Q 005000 530 HRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMIL 578 (720)
Q Consensus 530 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 578 (720)
.++++.|..+++++.++.|++..+|..|+.+|.+.|+|++|...+..+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999988875
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.01 E-value=8.7e-06 Score=51.81 Aligned_cols=34 Identities=15% Similarity=0.442 Sum_probs=30.8
Q ss_pred cchHHHHHHHHHcCCCchHHHHHHHHhHhCCCCC
Q 005000 80 VCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRP 113 (720)
Q Consensus 80 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p 113 (720)
+.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 4689999999999999999999999999999887
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.044 Score=60.34 Aligned_cols=131 Identities=15% Similarity=0.134 Sum_probs=73.5
Q ss_pred HcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHH--hccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 005000 91 SRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGF--TRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDM 168 (720)
Q Consensus 91 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 168 (720)
...+++..|+.....+++.. ||. .|..+++++ .+.|..++|..+++.....+.. |..+...+-..|...|+.++
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 34556677777777666642 443 355666665 4667777777666655554433 66667777777777777777
Q ss_pred HHHHHhcCCCC--CeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 005000 169 ARGIFDVSYKD--DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSAC 226 (720)
Q Consensus 169 A~~~f~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 226 (720)
|..+++..... +...-..+..+|++.+.+.+-.+.--+|-+ .++-+.+.|-++++..
T Consensus 96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Sli 154 (932)
T KOG2053|consen 96 AVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLI 154 (932)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHH
Confidence 77777766553 333333444556666655443333222222 2333445555555443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.053 Score=59.74 Aligned_cols=160 Identities=9% Similarity=-0.010 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHcCChH---HHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHH
Q 005000 416 TWTAMIVGLAINGHGD---KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492 (720)
Q Consensus 416 ~~~~li~~~~~~g~~~---~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 492 (720)
+-+.|+..+-+.++.. +|+-+++.-.... +-|..+-..++..|+-.|-+..|.+.|+.+. -..+..|..-| .+.
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLd-IK~IQ~DTlgh-~~~ 514 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLD-IKNIQTDTLGH-LIF 514 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcc-hHHhhhccchH-HHH
Confidence 4566777777777664 4455555444432 2344556667778888888888888888774 34555544333 233
Q ss_pred HHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CcchHHHHHhHhhhcCC
Q 005000 493 DLLGRAGHLNEALEVIKNMP--MKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPD----NEAVYVLLCNIYAACNR 566 (720)
Q Consensus 493 ~~~~~~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~ 566 (720)
..+...|++..+...++..- ...+..--.-++..-.++|.+.+-.+...---.+.-. -..+-....+.....++
T Consensus 515 ~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~ 594 (932)
T KOG2053|consen 515 RRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADR 594 (932)
T ss_pred HHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 44556667766666665531 0101111111222233556555544333221122111 11223345556667777
Q ss_pred hhHHHHHHHHHH
Q 005000 567 WDNFRELRQMIL 578 (720)
Q Consensus 567 ~~~a~~~~~~m~ 578 (720)
.+.-.+.+..|+
T Consensus 595 ~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 595 GTQLLKLLESMK 606 (932)
T ss_pred HHHHHHHHhccc
Confidence 777777777775
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.3e-05 Score=51.08 Aligned_cols=34 Identities=35% Similarity=0.583 Sum_probs=30.3
Q ss_pred eeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 005000 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLP 214 (720)
Q Consensus 181 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 214 (720)
+.+||++|.+|++.|+++.|+++|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3579999999999999999999999999999887
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0056 Score=57.66 Aligned_cols=145 Identities=11% Similarity=0.069 Sum_probs=91.2
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHH----Hhc
Q 005000 423 GLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLL----GRA 498 (720)
Q Consensus 423 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~----~~~ 498 (720)
.|...|++++|++..+... ..+.... =...+.+..+++-|.+.++.|. .+ .+..+.+-|..++ .-.
T Consensus 117 i~~~~~~~deAl~~~~~~~----~lE~~Al--~VqI~lk~~r~d~A~~~lk~mq---~i-ded~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 117 IYMHDGDFDEALKALHLGE----NLEAAAL--NVQILLKMHRFDLAEKELKKMQ---QI-DEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HhhcCCChHHHHHHHhccc----hHHHHHH--HHHHHHHHHHHHHHHHHHHHHH---cc-chHHHHHHHHHHHHHHhccc
Confidence 4555566666665555411 1111111 1223345555666666666664 11 2223333333333 335
Q ss_pred CCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHH-HHH
Q 005000 499 GHLNEALEVIKNM--PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRE-LRQ 575 (720)
Q Consensus 499 g~~~eA~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~-~~~ 575 (720)
+...+|.-+|++| +..|+..+.+....+|...|++++|+.+++.++..+++++.+...++-.-...|+-.++.+ .+.
T Consensus 187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 5678888888888 3668888888888888899999999999999999999888888888777777787665544 334
Q ss_pred HH
Q 005000 576 MI 577 (720)
Q Consensus 576 ~m 577 (720)
..
T Consensus 267 QL 268 (299)
T KOG3081|consen 267 QL 268 (299)
T ss_pred HH
Confidence 33
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00038 Score=61.23 Aligned_cols=113 Identities=12% Similarity=0.079 Sum_probs=88.0
Q ss_pred HHHHHHHCCCCCCh-HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 005000 436 MFSQMLRASIIPDE-VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PM 513 (720)
Q Consensus 436 l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~ 513 (720)
.|++... ..|+. .....+...+...|++++|.+.|+.+... .+.+...+..+...|.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455554 34544 44556667788889999999999887632 2346778888899999999999999998887 44
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 005000 514 KP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA 552 (720)
Q Consensus 514 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 552 (720)
.| +...|..+...+...|+++.|...++++++++|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 45 5778888888999999999999999999999998755
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0074 Score=68.31 Aligned_cols=149 Identities=11% Similarity=0.101 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHc
Q 005000 348 EFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAIN 427 (720)
Q Consensus 348 ~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 427 (720)
...+..+..+|.+.|..+++..+++.+++.. +.|+.+.|.+...|+.. ++++|.+++.+.. ..|...
T Consensus 116 k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV-----------~~~i~~ 182 (906)
T PRK14720 116 KLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI-----------YRFIKK 182 (906)
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH-----------HHHHhh
Confidence 3455566666777777777777777777766 56677777888888877 8888887776653 336666
Q ss_pred CChHHHHHHHHHHHHCCCCCChH-HHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 005000 428 GHGDKSLDMFSQMLRASIIPDEV-TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALE 506 (720)
Q Consensus 428 g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~ 506 (720)
+++.++.+++.++... .|+.. .|..++. .+....+..--+.++--+..-|-...+++++..
T Consensus 183 kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~----------------ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~ 244 (906)
T PRK14720 183 KQYVGIEEIWSKLVHY--NSDDFDFFLRIER----------------KVLGHREFTRLVGLLEDLYEPYKALEDWDEVIY 244 (906)
T ss_pred hcchHHHHHHHHHHhc--CcccchHHHHHHH----------------HHHhhhccchhHHHHHHHHHHHhhhhhhhHHHH
Confidence 7777888888887774 33332 2222222 222122222233344445555666667777777
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHH
Q 005000 507 VIKNM-PMKP-NSIVWGALLGAC 527 (720)
Q Consensus 507 ~~~~~-~~~p-~~~~~~~ll~~~ 527 (720)
+++.+ ...| |.....-++..|
T Consensus 245 iLK~iL~~~~~n~~a~~~l~~~y 267 (906)
T PRK14720 245 ILKKILEHDNKNNKAREELIRFY 267 (906)
T ss_pred HHHHHHhcCCcchhhHHHHHHHH
Confidence 77665 4444 344444444444
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00019 Score=74.38 Aligned_cols=97 Identities=13% Similarity=0.086 Sum_probs=45.2
Q ss_pred HHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 005000 458 ACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEM 535 (720)
Q Consensus 458 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 535 (720)
.+...|++++|++.|.++.+. -+.+...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 344445555555555554421 1113344444444555555555555555444 2333 33444444444555555555
Q ss_pred HHHHHHHHHhcCCCCcchHHH
Q 005000 536 AEMAAKQILELDPDNEAVYVL 556 (720)
Q Consensus 536 a~~~~~~~~~~~p~~~~~~~~ 556 (720)
|+..++++++++|+++.....
T Consensus 89 A~~~~~~al~l~P~~~~~~~~ 109 (356)
T PLN03088 89 AKAALEKGASLAPGDSRFTKL 109 (356)
T ss_pred HHHHHHHHHHhCCCCHHHHHH
Confidence 555555555555554444333
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0006 Score=60.70 Aligned_cols=85 Identities=19% Similarity=0.147 Sum_probs=42.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcC
Q 005000 491 MVDLLGRAGHLNEALEVIKNMP-MKPNS----IVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACN 565 (720)
Q Consensus 491 li~~~~~~g~~~eA~~~~~~~~-~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 565 (720)
+...+...|++++|...|+... ..||. .....|...+...|++++|...++.. .-.+-.+..+..++++|.+.|
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQG 132 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCC
Confidence 3344555555555555555541 11221 23333445555555666555555441 112223445556666666666
Q ss_pred ChhHHHHHHHH
Q 005000 566 RWDNFRELRQM 576 (720)
Q Consensus 566 ~~~~a~~~~~~ 576 (720)
++++|...++.
T Consensus 133 ~~~~A~~~y~~ 143 (145)
T PF09976_consen 133 DYDEARAAYQK 143 (145)
T ss_pred CHHHHHHHHHH
Confidence 66666666554
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00012 Score=70.04 Aligned_cols=94 Identities=24% Similarity=0.301 Sum_probs=73.7
Q ss_pred HHHhcCChhhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHH
Q 005000 458 ACTHTGMVDEGREYFADMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN-SIVWGALLGACRVHRDAE 534 (720)
Q Consensus 458 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~ 534 (720)
-..+.+++.+|...|.+++ .+.| |+..|..-..+|.+.|.++.|.+-.+.. .+.|. ..+|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 4567788888888888876 4555 5666667778888888888888877776 56674 568888888888888999
Q ss_pred HHHHHHHHHHhcCCCCcchH
Q 005000 535 MAEMAAKQILELDPDNEAVY 554 (720)
Q Consensus 535 ~a~~~~~~~~~~~p~~~~~~ 554 (720)
+|++.|+++++++|++....
T Consensus 167 ~A~~aykKaLeldP~Ne~~K 186 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYK 186 (304)
T ss_pred HHHHHHHhhhccCCCcHHHH
Confidence 99888899999988886433
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00062 Score=70.22 Aligned_cols=126 Identities=10% Similarity=0.094 Sum_probs=97.4
Q ss_pred hhHHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCh
Q 005000 386 GNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMV 465 (720)
Q Consensus 386 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 465 (720)
..+|+..+...++++.|..+|+++.+.++..+-.++..+...++..+|++++++.+... +-+...+..-...|...+++
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCH
Confidence 34566666678889999999999987777777778888888888889999999888652 22444555555567888999
Q ss_pred hhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 005000 466 DEGREYFADMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNMPMKP 515 (720)
Q Consensus 466 ~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p 515 (720)
+.|.++.+++. ...| +..+|..|+..|.+.|++++|+..++.+|.-|
T Consensus 251 ~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 251 ELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 99999998886 3455 45688899999999999999999999887544
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00068 Score=67.43 Aligned_cols=156 Identities=13% Similarity=0.092 Sum_probs=114.0
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHH-------------H
Q 005000 422 VGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAH-------------Y 488 (720)
Q Consensus 422 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-------------~ 488 (720)
..+...|+.++|.+.--..++.. .-+......-..++...++.+.|...|++.. .+.|+... +
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHH
Confidence 45677888888887776666532 1111222111223456778888888888764 44554322 2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhh
Q 005000 489 GCMVDLLGRAGHLNEALEVIKNM-PMKP-----NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYA 562 (720)
Q Consensus 489 ~~li~~~~~~g~~~eA~~~~~~~-~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 562 (720)
..=.....+.|++.+|.+.+.+. .+.| +...|.....+..+.|+.++|+.-.+.+++++|....+|...++++.
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHL 332 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 22234567899999999999987 4444 55566666677889999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhCC
Q 005000 563 ACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 563 ~~g~~~~a~~~~~~m~~~~ 581 (720)
..++|++|.+-++...+..
T Consensus 333 ~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 9999999999998887644
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00021 Score=57.80 Aligned_cols=92 Identities=26% Similarity=0.281 Sum_probs=73.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcC
Q 005000 488 YGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACN 565 (720)
Q Consensus 488 ~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 565 (720)
+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|+++.|...++++++..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445667777888888888888876 3344 44667777788888889999999999999888888888888899999999
Q ss_pred ChhHHHHHHHHHHh
Q 005000 566 RWDNFRELRQMILD 579 (720)
Q Consensus 566 ~~~~a~~~~~~m~~ 579 (720)
++++|...++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999888877654
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.81 E-value=5.4e-05 Score=57.53 Aligned_cols=64 Identities=25% Similarity=0.229 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcC-ChhHHHHHHHHHHh
Q 005000 516 NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACN-RWDNFRELRQMILD 579 (720)
Q Consensus 516 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 579 (720)
++.+|..+...+...|++++|+..++++++++|+++.++..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999 79999999888765
|
... |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.78 E-value=2.7e-05 Score=61.89 Aligned_cols=78 Identities=19% Similarity=0.247 Sum_probs=48.6
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHH
Q 005000 498 AGHLNEALEVIKNM-PMKP---NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFREL 573 (720)
Q Consensus 498 ~g~~~eA~~~~~~~-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 573 (720)
.|++++|+.+++++ ...| +...|..+..++.+.|++++|..++++ .+.+|.+......++.+|.+.|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35566666666655 1222 344555566677777777777777776 666666656666667777777777777777
Q ss_pred HHH
Q 005000 574 RQM 576 (720)
Q Consensus 574 ~~~ 576 (720)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0039 Score=58.24 Aligned_cols=154 Identities=16% Similarity=0.182 Sum_probs=79.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHH-HHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 005000 422 VGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVL-SACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGH 500 (720)
Q Consensus 422 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 500 (720)
-+....|+.+.|...++++... + |...-...+= .-+-..|++++|+++++.+.++ -+.|..+|--=+-+.-..|+
T Consensus 60 IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK 135 (289)
T KOG3060|consen 60 IAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAILKAQGK 135 (289)
T ss_pred HHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCC
Confidence 3444455555666666655553 1 3332111111 1133445666666666665522 13344445444445555555
Q ss_pred HHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcC---ChhHHHHHHH
Q 005000 501 LNEALEVIKNM--PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACN---RWDNFRELRQ 575 (720)
Q Consensus 501 ~~eA~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~a~~~~~ 575 (720)
.-+|++-+.+. .+-.|...|.-+...|...|++++|.-.+++++=..|-++..+..+++++.-.| +.+-|++.+.
T Consensus 136 ~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~ 215 (289)
T KOG3060|consen 136 NLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYE 215 (289)
T ss_pred cHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55555554443 233466666666666666666666666666666666666666666666655443 3444445555
Q ss_pred HHHh
Q 005000 576 MILD 579 (720)
Q Consensus 576 ~m~~ 579 (720)
+..+
T Consensus 216 ~alk 219 (289)
T KOG3060|consen 216 RALK 219 (289)
T ss_pred HHHH
Confidence 4443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0022 Score=59.79 Aligned_cols=151 Identities=15% Similarity=0.159 Sum_probs=119.4
Q ss_pred cCChHHHHHHHHHHHH---CC-CCCChH-HHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 005000 427 NGHGDKSLDMFSQMLR---AS-IIPDEV-TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHL 501 (720)
Q Consensus 427 ~g~~~~A~~l~~~m~~---~g-~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 501 (720)
..++++.++++.++.. .| ..|+.. .|-.+.-+....|..+-|...++.+..++ +-+..+-..-...+.-.|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence 3456777777777664 34 556664 45566667788899999999999987544 22333333334457788999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 502 NEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 502 ~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
++|+++++.. ..+| |.+++---+......|+.-+|++.+...++..|.|..++.-|+.+|...|++++|.=-++++.-
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 9999999998 4455 7788888888888899999999999999999999999999999999999999999999888864
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0018 Score=57.59 Aligned_cols=123 Identities=17% Similarity=0.214 Sum_probs=79.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh----HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccH--HHHHHH
Q 005000 418 TAMIVGLAINGHGDKSLDMFSQMLRASIIPDE----VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNE--AHYGCM 491 (720)
Q Consensus 418 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~l 491 (720)
..++..+ ..++...+...++.+.... |+. .....+...+...|++++|...|+.+.. ....|+. ...-.+
T Consensus 16 ~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~-~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 16 EQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALA-NAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-hCCCHHHHHHHHHHH
Confidence 3334444 3677777777778777752 232 2333455667778888888888888763 2322221 233346
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005000 492 VDLLGRAGHLNEALEVIKNMPMKP-NSIVWGALLGACRVHRDAEMAEMAAKQIL 544 (720)
Q Consensus 492 i~~~~~~g~~~eA~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 544 (720)
...+...|++++|+..++..+..+ ....+......+...|+.++|...|++++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 677788888888888887763222 44556666677888888888888887753
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.74 E-value=3.5e-05 Score=47.74 Aligned_cols=31 Identities=16% Similarity=0.535 Sum_probs=27.4
Q ss_pred chHHHHHHHHHcCCCchHHHHHHHHhHhCCC
Q 005000 81 CLWNTMIKGYSRIDSHKNGVLIYLDMLKSDV 111 (720)
Q Consensus 81 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~ 111 (720)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999988774
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.73 E-value=3.8e-05 Score=47.54 Aligned_cols=31 Identities=42% Similarity=0.874 Sum_probs=26.5
Q ss_pred eeHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 005000 182 VTWNAMFSGYKRVKQFDETRKLFGEMERKGV 212 (720)
Q Consensus 182 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 212 (720)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788999999999999999999999888764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00041 Score=59.32 Aligned_cols=90 Identities=13% Similarity=0.063 Sum_probs=42.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---cchHHHHHhHh
Q 005000 490 CMVDLLGRAGHLNEALEVIKNM-PMKPN----SIVWGALLGACRVHRDAEMAEMAAKQILELDPDN---EAVYVLLCNIY 561 (720)
Q Consensus 490 ~li~~~~~~g~~~eA~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~ 561 (720)
.++..+.+.|++++|.+.++++ ...|+ ...+..+...+...|+++.|...+++++...|++ +..+..++.++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 3344444445555554444444 11121 2233344444555555555555555555554443 23444555555
Q ss_pred hhcCChhHHHHHHHHHHh
Q 005000 562 AACNRWDNFRELRQMILD 579 (720)
Q Consensus 562 ~~~g~~~~a~~~~~~m~~ 579 (720)
.+.|++++|.+.++.+.+
T Consensus 87 ~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHhCChHHHHHHHHHHHH
Confidence 555555555555555444
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00069 Score=57.88 Aligned_cols=104 Identities=13% Similarity=0.059 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHH
Q 005000 451 TYVGVLSACTHTGMVDEGREYFADMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN----SIVWGALL 524 (720)
Q Consensus 451 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~----~~~~~~ll 524 (720)
++..+...+...|++++|.+.|..+.....-.| ....+..+...+.+.|++++|.+.++.+ ...|+ ..++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344455566667777777777777653321111 1344555777777778888888777776 22233 45677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCcchH
Q 005000 525 GACRVHRDAEMAEMAAKQILELDPDNEAVY 554 (720)
Q Consensus 525 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 554 (720)
.++...|+.++|...++++++..|+++...
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 888888899999999999988888875543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00029 Score=67.40 Aligned_cols=97 Identities=19% Similarity=0.290 Sum_probs=77.4
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCcc-HHHHHHHHHHHHhcC
Q 005000 422 VGLAINGHGDKSLDMFSQMLRASIIP-DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN-EAHYGCMVDLLGRAG 499 (720)
Q Consensus 422 ~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g 499 (720)
.-+.+.+++.+|+..|.+.++. .| |.+-|..-..+|++.|.++.|++-.+... .+.|. ...|..|..+|...|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccC
Confidence 4567889999999999999985 44 55677778889999999999998887765 34553 578889999999999
Q ss_pred CHHHHHHHHHhC-CCCCCHHHHHHH
Q 005000 500 HLNEALEVIKNM-PMKPNSIVWGAL 523 (720)
Q Consensus 500 ~~~eA~~~~~~~-~~~p~~~~~~~l 523 (720)
++++|.+.|++. .+.|+..+|-+=
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~n 188 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSN 188 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHH
Confidence 999999999887 788876666433
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.048 Score=54.29 Aligned_cols=245 Identities=18% Similarity=0.209 Sum_probs=164.7
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHH
Q 005000 325 RVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQR 404 (720)
Q Consensus 325 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~ 404 (720)
-.|+++.|.+-|+.|...- +.-..-+..+.-..-+.|+.+.++++-...-..- +.-...+.++++..+..|+++.|++
T Consensus 132 ~eG~~~~Ar~kfeAMl~dP-EtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~Alk 209 (531)
T COG3898 132 LEGDYEDARKKFEAMLDDP-ETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALK 209 (531)
T ss_pred hcCchHHHHHHHHHHhcCh-HHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHH
Confidence 4688888888888887521 1111223334444457788888888777665543 2234567788999999999999999
Q ss_pred HHHhc-----cCCCHH--HHHHHHHHHH---HcCChHHHHHHHHHHHHCCCCCChH-HHHHHHHHHHhcCChhhHHHHHH
Q 005000 405 VFREM-----LRKDKF--TWTAMIVGLA---INGHGDKSLDMFSQMLRASIIPDEV-TYVGVLSACTHTGMVDEGREYFA 473 (720)
Q Consensus 405 ~~~~~-----~~~~~~--~~~~li~~~~---~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 473 (720)
+.+.- .++++. .--.|+.+-+ -.-+...|...-.+..+ +.||.+ .-.....++.+.|++.++-.+++
T Consensus 210 Lvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE 287 (531)
T COG3898 210 LVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILE 287 (531)
T ss_pred HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHH
Confidence 99865 344433 2223332222 13345566655555444 577764 33445568899999999999999
Q ss_pred HHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 005000 474 DMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM----PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDP 548 (720)
Q Consensus 474 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 548 (720)
.+- ..+|.+.++...+ +.|.|+. ++.-+++. .++| +..+-.++..+-...|++..|..-.+.+....|
T Consensus 288 ~aW---K~ePHP~ia~lY~--~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p 360 (531)
T COG3898 288 TAW---KAEPHPDIALLYV--RARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP 360 (531)
T ss_pred HHH---hcCCChHHHHHHH--HhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc
Confidence 886 4577776654333 3455543 33333322 3566 566777888888999999999999999999999
Q ss_pred CCcchHHHHHhHhhhc-CChhHHHHHHHHHHhCC
Q 005000 549 DNEAVYVLLCNIYAAC-NRWDNFRELRQMILDRG 581 (720)
Q Consensus 549 ~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~ 581 (720)
.. +.|.+|+++-... |+-.+++..+.+..+..
T Consensus 361 re-s~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 361 RE-SAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred hh-hHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 74 7899999998655 99999998877766543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.12 Score=53.95 Aligned_cols=161 Identities=9% Similarity=0.058 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHH
Q 005000 414 KFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP-DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492 (720)
Q Consensus 414 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 492 (720)
..+|-..++.-.+..-...|..+|.+..+.+..+ +....++++. |...++.+-|.++|+.=.+++| -++..-.+.+
T Consensus 366 tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE-y~cskD~~~AfrIFeLGLkkf~--d~p~yv~~Yl 442 (656)
T KOG1914|consen 366 TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME-YYCSKDKETAFRIFELGLKKFG--DSPEYVLKYL 442 (656)
T ss_pred ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH-HHhcCChhHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 3467777777778888899999999999988888 4445555554 4456889999999987665554 3445556788
Q ss_pred HHHHhcCCHHHHHHHHHhCC---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----cchHHHHHhHhhh
Q 005000 493 DLLGRAGHLNEALEVIKNMP---MKP--NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDN----EAVYVLLCNIYAA 563 (720)
Q Consensus 493 ~~~~~~g~~~eA~~~~~~~~---~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~ 563 (720)
+-+.+.|+-..|..+|++.. +.| ....|..++.-=..-|+...+..+-++....-|.+ ...-..+.+-|.-
T Consensus 443 dfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~ 522 (656)
T KOG1914|consen 443 DFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGI 522 (656)
T ss_pred HHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhh
Confidence 99999999999999999872 344 35799999999999999999999998888766521 1233456667776
Q ss_pred cCChhHHHHHHHHH
Q 005000 564 CNRWDNFRELRQMI 577 (720)
Q Consensus 564 ~g~~~~a~~~~~~m 577 (720)
.+.+..-..-++.|
T Consensus 523 ~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 523 LDLYPCSLDELKFL 536 (656)
T ss_pred cccccccHHHHHhh
Confidence 77665555444444
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0025 Score=68.95 Aligned_cols=36 Identities=19% Similarity=0.248 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHHHHc--C---ChHHHHHHHHHHHHCCCCCCh
Q 005000 412 KDKFTWTAMIVGLAIN--G---HGDKSLDMFSQMLRASIIPDE 449 (720)
Q Consensus 412 ~~~~~~~~li~~~~~~--g---~~~~A~~l~~~m~~~g~~p~~ 449 (720)
.|...|...+.+.... + +..+|..+|++.++. .|+.
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~ 375 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDF 375 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCc
Confidence 4667777777664432 2 256788888888874 6665
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0018 Score=59.59 Aligned_cols=129 Identities=16% Similarity=0.206 Sum_probs=77.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCc-cHHHHH
Q 005000 413 DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD--EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP-NEAHYG 489 (720)
Q Consensus 413 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~ 489 (720)
....+..+...+...|++++|+..|++.......|+ ...+..+...+.+.|++++|...+.+... ..| +...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 344566666667777777777777777766433332 24566666667777777777777776652 223 344555
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcC
Q 005000 490 CMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACN 565 (720)
Q Consensus 490 ~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 565 (720)
.+..+|...|+...+..-++.. ...+++|.+.++++++.+|++ |..+...+...|
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~ 165 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcC
Confidence 5566666666655544333221 112677888888888888876 444444444444
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00016 Score=54.19 Aligned_cols=58 Identities=29% Similarity=0.287 Sum_probs=45.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 523 LLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 523 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
+...+...|++++|+..++++++..|+++..+..++.++...|++++|...++.+.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4456777888888888888888888888888888888888888888888888877653
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00064 Score=62.35 Aligned_cols=94 Identities=13% Similarity=-0.074 Sum_probs=76.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 005000 484 NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN----SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLC 558 (720)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 558 (720)
....|..++..+...|++++|+..+++. ...|+ ..+|..+...+...|++++|...+++++++.|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3456667777888889999999988887 23332 357889999999999999999999999999999988888888
Q ss_pred hHhh-------hcCChhHHHHHHHHH
Q 005000 559 NIYA-------ACNRWDNFRELRQMI 577 (720)
Q Consensus 559 ~~~~-------~~g~~~~a~~~~~~m 577 (720)
.+|. ..|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 888888776666544
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00071 Score=62.31 Aligned_cols=82 Identities=18% Similarity=0.103 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHh
Q 005000 485 EAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN----SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCN 559 (720)
Q Consensus 485 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 559 (720)
...+..+...|.+.|++++|...+++. ...|+ ...|..+...+...|++++|...++++++..|+++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 344566666777777777777777765 22222 3577888888889999999999999999999998888888888
Q ss_pred HhhhcCC
Q 005000 560 IYAACNR 566 (720)
Q Consensus 560 ~~~~~g~ 566 (720)
+|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8888776
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.027 Score=53.19 Aligned_cols=173 Identities=12% Similarity=0.088 Sum_probs=108.5
Q ss_pred HHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHH
Q 005000 372 TYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT 451 (720)
Q Consensus 372 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 451 (720)
+.+.......+......-...|...|++++|.+.......-+....+ ...+.+..+.+-|.+.+++|.+- -+..|
T Consensus 97 E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded~t 171 (299)
T KOG3081|consen 97 ELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DEDAT 171 (299)
T ss_pred HHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chHHH
Confidence 33333333333333333445577778888888877763322333333 33455666778888888888763 25567
Q ss_pred HHHHHHHHHh----cCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHH
Q 005000 452 YVGVLSACTH----TGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMK-PNSIVWGALLG 525 (720)
Q Consensus 452 ~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~-p~~~~~~~ll~ 525 (720)
.+.|..++.+ .+.+..|.-+|++|.+ ...|+..+.+-+..+....|++++|..++++. ..+ .++.+...++-
T Consensus 172 LtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv 249 (299)
T KOG3081|consen 172 LTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIV 249 (299)
T ss_pred HHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 7766666643 3557788888888853 35677777777777788888888888888877 222 35666655555
Q ss_pred HHHhcC-CHHHHHHHHHHHHhcCCCCc
Q 005000 526 ACRVHR-DAEMAEMAAKQILELDPDNE 551 (720)
Q Consensus 526 ~~~~~g-~~~~a~~~~~~~~~~~p~~~ 551 (720)
.-...| +.+--.+...++....|..+
T Consensus 250 ~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 250 LALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 544444 44555667777777777753
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0013 Score=68.08 Aligned_cols=104 Identities=12% Similarity=0.123 Sum_probs=81.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhc
Q 005000 420 MIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP-NEAHYGCMVDLLGRA 498 (720)
Q Consensus 420 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~ 498 (720)
....+...|++++|+++|++.++.. .-+...|..+..++...|++++|+..++++.. +.| +...|..+..+|.+.
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHh
Confidence 3456778899999999999999853 22456777888899999999999999999863 344 567888899999999
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 005000 499 GHLNEALEVIKNM-PMKPNSIVWGALLGAC 527 (720)
Q Consensus 499 g~~~eA~~~~~~~-~~~p~~~~~~~ll~~~ 527 (720)
|++++|+..|++. .+.|+......++..|
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999987 5667655544444333
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.15 Score=51.56 Aligned_cols=124 Identities=20% Similarity=0.247 Sum_probs=91.8
Q ss_pred hHHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChh
Q 005000 387 NALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVD 466 (720)
Q Consensus 387 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 466 (720)
+..+.-+...|+...|.++-.+..-||..-|-..+.+++..+++++-.++... .- .++.|..++.+|...|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHHHCCCHH
Confidence 34455566788999999999988888999999999999999999877665432 22 3477888899999999999
Q ss_pred hHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 005000 467 EGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVH 530 (720)
Q Consensus 467 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~ 530 (720)
+|..+...+ + +..-+.+|.++|++.+|.+.--+.. |...+..+..-|..+
T Consensus 255 eA~~yI~k~------~-----~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~~~~ 304 (319)
T PF04840_consen 255 EASKYIPKI------P-----DEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRCPGN 304 (319)
T ss_pred HHHHHHHhC------C-----hHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHCCCC
Confidence 998887653 1 2456788999999999988765542 555555555444433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00026 Score=53.49 Aligned_cols=52 Identities=25% Similarity=0.337 Sum_probs=43.3
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 528 RVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 528 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
...|++++|+..++++++.+|++..+...++.+|.+.|++++|.++++.+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4578888899999999988998888888899999999999999888877654
|
... |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.15 Score=51.48 Aligned_cols=110 Identities=11% Similarity=0.172 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005000 450 VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRV 529 (720)
Q Consensus 450 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~ 529 (720)
.+.+..+.-|...|....|.++-. ++.+ |+...|...+.+|+..|+|++-.++... +-.++-|.-++.+|..
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k----~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKK----EFKV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHH----HcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 355566777888899888887764 4554 8999999999999999999998887654 3356889999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHH
Q 005000 530 HRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQM 576 (720)
Q Consensus 530 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 576 (720)
.|+..+|.....+ + .+.....+|.+.|+|.+|.+.--+
T Consensus 250 ~~~~~eA~~yI~k---~------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 250 YGNKKEASKYIPK---I------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CCCHHHHHHHHHh---C------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999888877 1 225578899999999999887443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00037 Score=52.09 Aligned_cols=61 Identities=26% Similarity=0.328 Sum_probs=50.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 005000 491 MVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551 (720)
Q Consensus 491 li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 551 (720)
+...+.+.|++++|.+.|++. ...| +...|..+...+...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456788899999999999987 5556 567888899999999999999999999999999874
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.002 Score=56.69 Aligned_cols=89 Identities=11% Similarity=0.033 Sum_probs=78.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChh
Q 005000 491 MVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWD 568 (720)
Q Consensus 491 li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 568 (720)
...-+...|++++|..+|+-+ -..| +..-|..|...|...+++++|...|..+..++++||.++...+..|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 344456789999999999887 3344 66678899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 005000 569 NFRELRQMILD 579 (720)
Q Consensus 569 ~a~~~~~~m~~ 579 (720)
.|+.-+....+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999998876
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0027 Score=51.03 Aligned_cols=90 Identities=27% Similarity=0.230 Sum_probs=44.5
Q ss_pred HHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 005000 457 SACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAE 534 (720)
Q Consensus 457 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~ 534 (720)
..+...|++++|...++.+.+. .+.+...+..+...|...|++++|.+.++.. ...| +..+|..+...+...|+++
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHH
Confidence 3344444445555444444311 1112233444455555555555555555543 2222 3345555566666666666
Q ss_pred HHHHHHHHHHhcCC
Q 005000 535 MAEMAAKQILELDP 548 (720)
Q Consensus 535 ~a~~~~~~~~~~~p 548 (720)
.|...++++++..|
T Consensus 86 ~a~~~~~~~~~~~~ 99 (100)
T cd00189 86 EALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHccCC
Confidence 66666666666555
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0017 Score=62.74 Aligned_cols=102 Identities=20% Similarity=0.136 Sum_probs=87.1
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCCcchHHH
Q 005000 482 EPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVH---RDAEMAEMAAKQILELDPDNEAVYVL 556 (720)
Q Consensus 482 ~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~~~~~~~ 556 (720)
+-|.+.|-.|...|.+.|+...|..-|.+. .+.| ++..+..+..++... .+..++..++++++.++|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 457899999999999999999999999987 4444 667777777664433 35678999999999999999999999
Q ss_pred HHhHhhhcCChhHHHHHHHHHHhCCCc
Q 005000 557 LCNIYAACNRWDNFRELRQMILDRGIK 583 (720)
Q Consensus 557 l~~~~~~~g~~~~a~~~~~~m~~~~~~ 583 (720)
|+..+...|++.+|...++.|.+....
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999886543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.011 Score=59.07 Aligned_cols=143 Identities=14% Similarity=0.179 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH-HHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHH
Q 005000 415 FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSA-CTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVD 493 (720)
Q Consensus 415 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 493 (720)
.+|-.++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+...+.+ ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 467788888888888899999999988542 2334455555444 333567777999999998654 556778999999
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHh
Q 005000 494 LLGRAGHLNEALEVIKNM-PMKPN----SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIY 561 (720)
Q Consensus 494 ~~~~~g~~~eA~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 561 (720)
.+.+.|+.+.|..+|++. ..-|. ...|...+..=.+.|+.+....+.+++.+.-|++. ....+.+=|
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~-~~~~f~~ry 150 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN-SLELFSDRY 150 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS--HHHHHHCCT
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh-HHHHHHHHh
Confidence 999999999999999997 22233 35999999999999999999999999999988853 333344433
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00085 Score=53.20 Aligned_cols=81 Identities=14% Similarity=0.259 Sum_probs=39.9
Q ss_pred cCChHHHHHHHHHHHHCCCC-CChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 005000 427 NGHGDKSLDMFSQMLRASII-PDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEAL 505 (720)
Q Consensus 427 ~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~ 505 (720)
.|+++.|+.+|+++.+.... |+...+..+..++.+.|++++|..+++.. +.+. .+....-.+...|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~--~~~~-~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL--KLDP-SNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH--THHH-CHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh--CCCC-CCHHHHHHHHHHHHHhCCHHHHH
Confidence 45666666666666654321 22333444555666666666666666541 1111 11222333455566666666666
Q ss_pred HHHHh
Q 005000 506 EVIKN 510 (720)
Q Consensus 506 ~~~~~ 510 (720)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 65543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0006 Score=52.36 Aligned_cols=58 Identities=21% Similarity=0.207 Sum_probs=49.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 524 LGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 524 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
...+...++++.|..+++++++++|+++..+..++.+|.+.|++++|.+.++...+..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3567788899999999999999999999999999999999999999999888887543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.012 Score=53.86 Aligned_cols=110 Identities=18% Similarity=0.127 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHH
Q 005000 414 KFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD--EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCM 491 (720)
Q Consensus 414 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 491 (720)
...|..+...+...|++++|+..|++.......|. ..++..+...+...|++++|+..++..... .+.....+..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHH
Confidence 34566666677777888888888887766432222 236666777777777888877777776521 12223444455
Q ss_pred HHHHH-------hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 005000 492 VDLLG-------RAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDN 550 (720)
Q Consensus 492 i~~~~-------~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 550 (720)
...|. +.|++++|... +++|...++++++.+|++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~-------------------------~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAW-------------------------FDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHH-------------------------HHHHHHHHHHHHHhCccc
Confidence 55554 33333333222 345667777888888864
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0017 Score=64.39 Aligned_cols=258 Identities=11% Similarity=0.013 Sum_probs=159.4
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCC---CCHHHHHHHHHHHhccCcHHHHHHHHHHHH--H--cCCC-CChhHhhHHhhhh
Q 005000 322 GYLRVNRFREALTLFREMQTSNIR---PDEFTIVSILTACANLGALELGEWVKTYID--K--NKVK-NDIFVGNALIDMY 393 (720)
Q Consensus 322 ~~~~~g~~~~A~~~~~~m~~~g~~---p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~--~--~~~~-~~~~~~~~li~~y 393 (720)
-+++.|+....+.+|+..++.|.. .=+.+|..+-++|.-++++++|.++|..=+ . .|-+ -.......|.+.+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 467888888888888888887732 123445566677777888888888775422 1 1100 0112222344444
Q ss_pred hhcCCHHHHHHHHHhcc-------CC--CHHHHHHHHHHHHHcCC--------------------hHHHHHHHHHHH---
Q 005000 394 CKCGDVEKAQRVFREML-------RK--DKFTWTAMIVGLAINGH--------------------GDKSLDMFSQML--- 441 (720)
Q Consensus 394 ~~~g~~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~g~--------------------~~~A~~l~~~m~--- 441 (720)
--.|.+++|.....+-. .+ ....+..+...|...|+ .+.|.++|.+=+
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777665433221 11 12234444555544332 234445554322
Q ss_pred -HCCCC-CChHHHHHHHHHHHhcCChhhHHHHHHHHH---HHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC----
Q 005000 442 -RASII-PDEVTYVGVLSACTHTGMVDEGREYFADMT---IQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM---- 511 (720)
Q Consensus 442 -~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~---~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~---- 511 (720)
..|-. .-...|..|.+.|.-.|+++.|+..++.-. +++|-.. ....+..+...+.-.|+++.|.+.++..
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 12200 111356666666777889999998876422 2333222 2356778888999999999999998764
Q ss_pred ---CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 512 ---PMK-PNSIVWGALLGACRVHRDAEMAEMAAKQILELD------PDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 512 ---~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
+-+ ....+..+|.+.|....+++.|+..+.+=+.+- .....++..|+++|...|..+.|..+.+..++
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 211 245677889999999999999999888766542 22456899999999999999999987766544
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00014 Score=45.90 Aligned_cols=33 Identities=27% Similarity=0.493 Sum_probs=31.0
Q ss_pred HHHHHhcCCCCcchHHHHHhHhhhcCChhHHHH
Q 005000 540 AKQILELDPDNEAVYVLLCNIYAACNRWDNFRE 572 (720)
Q Consensus 540 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 572 (720)
++++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 689999999999999999999999999999863
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.39 Score=52.20 Aligned_cols=353 Identities=11% Similarity=0.071 Sum_probs=198.4
Q ss_pred HHHhCCChhHHHHHHHHH--------HHCCCCCCHhhHHH-----HHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHH
Q 005000 190 GYKRVKQFDETRKLFGEM--------ERKGVLPTSVTIVL-----VLSACAKLKDLDVGKRAHRYVKECKIVPNLILENA 256 (720)
Q Consensus 190 ~~~~~g~~~~A~~l~~~m--------~~~g~~p~~~t~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 256 (720)
++.+.-++++-..+-++. ..-|++.+..-|.. ++.-+...+.+..|.++-..+-..-... ..++..
T Consensus 398 ~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~ 476 (829)
T KOG2280|consen 398 ASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLE 476 (829)
T ss_pred cccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHH
Confidence 344445555544444433 23466666555543 4556666777888888776654332222 466666
Q ss_pred HHHHHHhcCC---HHHHHHHHhhcCC--CCchhHHHHHHHHHhcCCHHHHHHHHhhCCCC--------CccchHHHHHHH
Q 005000 257 LTDMYAACGE---MGFALEIFGNIKN--KDVISWTAIVTGYINRGQVDMARQYFDQMPER--------DYVLWTAMIDGY 323 (720)
Q Consensus 257 li~~y~~~g~---~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~--------~~~~~~~li~~~ 323 (720)
...-+.+..+ -+.+..+-+++.. .+.++|..+..-...+|+.+-|..+++.-+.. +..-+..-+.-.
T Consensus 477 Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~ka 556 (829)
T KOG2280|consen 477 WARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKA 556 (829)
T ss_pred HHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHH
Confidence 6666666532 3344455555555 46677888888888889999888888754432 222233444445
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHH
Q 005000 324 LRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQ 403 (720)
Q Consensus 324 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 403 (720)
.+.|+.+-...++..+...- +...|...+ .+...|..++.+..+..-. ..|-+.|-...+..++-
T Consensus 557 ies~d~~Li~~Vllhlk~~~---~~s~l~~~l------~~~p~a~~lY~~~~r~~~~------~~l~d~y~q~dn~~~~a 621 (829)
T KOG2280|consen 557 IESGDTDLIIQVLLHLKNKL---NRSSLFMTL------RNQPLALSLYRQFMRHQDR------ATLYDFYNQDDNHQALA 621 (829)
T ss_pred HhcCCchhHHHHHHHHHHHH---HHHHHHHHH------HhchhhhHHHHHHHHhhch------hhhhhhhhcccchhhhh
Confidence 55556555555555444321 111111111 1122333344333331100 11222232222222211
Q ss_pred HHH-Hhc-----cCCCHHHHHHHHHHHHHcCCh---HH-------HHHHHHHHHH-CCCCCChHHHHHHHHHHHhcCChh
Q 005000 404 RVF-REM-----LRKDKFTWTAMIVGLAINGHG---DK-------SLDMFSQMLR-ASIIPDEVTYVGVLSACTHTGMVD 466 (720)
Q Consensus 404 ~~~-~~~-----~~~~~~~~~~li~~~~~~g~~---~~-------A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~ 466 (720)
.+- +.. .+.-..........+++.... .+ -+.+.+.+.. .|..-...|.+--+.-+...|+..
T Consensus 622 ~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k 701 (829)
T KOG2280|consen 622 SFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNK 701 (829)
T ss_pred hhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchH
Confidence 111 110 011111222223334433321 11 2223333322 233334456666677888999999
Q ss_pred hHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005000 467 EGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILEL 546 (720)
Q Consensus 467 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (720)
+|.++-.+.+ .||...|..-+.+++..+++++-+++-+++. .++-|.-+..+|.+.|+.++|...+-+.-.+
T Consensus 702 ~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l 773 (829)
T KOG2280|consen 702 RAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL 773 (829)
T ss_pred HHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCCh
Confidence 9999877654 5899999999999999999999999888763 2556777889999999999998887654322
Q ss_pred CCCCcchHHHHHhHhhhcCChhHHHHHH
Q 005000 547 DPDNEAVYVLLCNIYAACNRWDNFRELR 574 (720)
Q Consensus 547 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 574 (720)
.-...+|.+.|++.+|.++-
T Consensus 774 --------~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 774 --------QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred --------HHHHHHHHHhccHHHHHHHH
Confidence 25788999999999998864
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00061 Score=51.63 Aligned_cols=65 Identities=25% Similarity=0.248 Sum_probs=54.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 005000 484 NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHR-DAEMAEMAAKQILELDP 548 (720)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 548 (720)
++..|..+...+.+.|++++|+..|++. ...| +...|..+..++...| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4567778888888999999999988886 4556 5678888889999999 79999999999999988
|
... |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.01 Score=52.66 Aligned_cols=126 Identities=10% Similarity=0.040 Sum_probs=54.1
Q ss_pred CCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHHH
Q 005000 446 IPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP---NSIVWG 521 (720)
Q Consensus 446 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p---~~~~~~ 521 (720)
.|....-..|..+....|+..+|...|++.. .--+..|....-.+..+....+++.+|...++++ ...| .+.+..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qal-sG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQAL-SGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHh-ccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 3444333444445555555555555554443 1112233444444444444455555555554443 1111 111222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHH
Q 005000 522 ALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFREL 573 (720)
Q Consensus 522 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 573 (720)
.+...+...|.++.|+..++.++.--|+ +..-...+..+.++|+.+++..-
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQ 215 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHH
Confidence 3334444455555555555555544443 23333334444455544444443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.34 Score=49.57 Aligned_cols=124 Identities=18% Similarity=0.154 Sum_probs=76.3
Q ss_pred hcCC-HHHHHHHHHhccC---CCHHHHHHHH----HHHHHc---CChHHHHHHHHHHHHCCCCCChH----HHHHHHHH-
Q 005000 395 KCGD-VEKAQRVFREMLR---KDKFTWTAMI----VGLAIN---GHGDKSLDMFSQMLRASIIPDEV----TYVGVLSA- 458 (720)
Q Consensus 395 ~~g~-~~~A~~~~~~~~~---~~~~~~~~li----~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~a- 458 (720)
+.|. -++|..+++.+.+ -|..+-|... ..|.+. ....+-+.+-+-..+.|+.|-.+ .-+.+..|
T Consensus 391 ~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAE 470 (549)
T PF07079_consen 391 EIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAE 470 (549)
T ss_pred hcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHH
Confidence 4444 6778888777642 3544444332 223221 22233334444445677776543 23333333
Q ss_pred -HHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 005000 459 -CTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGAL 523 (720)
Q Consensus 459 -~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~l 523 (720)
+...|++.++.-+-.-+. .+.|++.+|..+.-.+....+++||.+++..+| |+..+|++-
T Consensus 471 yLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~dsk 531 (549)
T PF07079_consen 471 YLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDSK 531 (549)
T ss_pred HHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHHH
Confidence 456788888876554443 678999999999888888999999999999875 566666543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00041 Score=52.42 Aligned_cols=56 Identities=25% Similarity=0.332 Sum_probs=25.7
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 005000 498 AGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAV 553 (720)
Q Consensus 498 ~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 553 (720)
.|++++|+++|+++ ...| +...+..+..+|...|++++|...++++...+|+++..
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 61 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEY 61 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHH
Confidence 44444444444444 2222 34444444455555555555555555555555554333
|
... |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.23 Score=49.84 Aligned_cols=124 Identities=11% Similarity=0.158 Sum_probs=67.0
Q ss_pred HHhhhhhhc-CCHHHHHHHHHhccC-----CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-----Ch-HH
Q 005000 388 ALIDMYCKC-GDVEKAQRVFREMLR-----KD----KFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP-----DE-VT 451 (720)
Q Consensus 388 ~li~~y~~~-g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----~~-~t 451 (720)
.+...|.+. |++++|.+.|++..+ .. ...+..+...+.+.|++++|+++|++....-... +. ..
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 344455555 666666666665521 11 2244555667788888888888888877643221 11 12
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHc-CCCcc--HHHHHHHHHHHHh--cCCHHHHHHHHHhC
Q 005000 452 YVGVLSACTHTGMVDEGREYFADMTIQH-GIEPN--EAHYGCMVDLLGR--AGHLNEALEVIKNM 511 (720)
Q Consensus 452 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~p~--~~~~~~li~~~~~--~g~~~eA~~~~~~~ 511 (720)
|...+-.+...|++..|.+.+++..... ++..+ ......|++++-. ...+++|..-|+.+
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 3333445566788888888887764111 12122 3344556666643 34567777777776
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.047 Score=48.60 Aligned_cols=100 Identities=14% Similarity=0.194 Sum_probs=53.7
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CcchH
Q 005000 480 GIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM---PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPD--NEAVY 554 (720)
Q Consensus 480 ~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~ 554 (720)
.+.|++..--.|...+.+.|+..||...|++. .+.-|......+..+....+++..|...++++.+..|. .+...
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 34455555555555555555555555555554 23335555555555555555555555555555555543 34445
Q ss_pred HHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 555 VLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 555 ~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
..++..|...|++++|+..++....
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHH
Confidence 5555555555555555555554443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.019 Score=62.24 Aligned_cols=135 Identities=12% Similarity=0.068 Sum_probs=97.6
Q ss_pred CCCCCChHHHHHHHHHHHhc-----CChhhHHHHHHHHHHHcCCCccH-HHHHHHHHHHHhc--------CCHHHHHHHH
Q 005000 443 ASIIPDEVTYVGVLSACTHT-----GMVDEGREYFADMTIQHGIEPNE-AHYGCMVDLLGRA--------GHLNEALEVI 508 (720)
Q Consensus 443 ~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~--------g~~~eA~~~~ 508 (720)
.+.+.|...|...+.+.... +..++|..+|+++. ...|+- ..|..+..+|... ++++.+.+..
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai---~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEIL---KSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 34566778888888875543 23678999999887 456763 3444443333221 2344555555
Q ss_pred HhC---C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 509 KNM---P-MKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 509 ~~~---~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
++. + ...++..|.++.-.....|++++|...++++++++| +...|..++.+|...|+.++|.+.+++.....
T Consensus 408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 553 1 233567788887777788999999999999999999 57899999999999999999999998886644
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.075 Score=53.30 Aligned_cols=114 Identities=16% Similarity=0.155 Sum_probs=61.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc-CChhhHHHHHHHHHHHcCCCcc----HHHHHHHHHHH
Q 005000 421 IVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHT-GMVDEGREYFADMTIQHGIEPN----EAHYGCMVDLL 495 (720)
Q Consensus 421 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~ 495 (720)
+..|...|++..|-+.+.++ ...|... |++++|.+.|++..+-+.-... ...+..+...+
T Consensus 101 ~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 44555555555554444433 3344444 5666666666655432211111 23455566778
Q ss_pred HhcCCHHHHHHHHHhCC---CC-----CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005000 496 GRAGHLNEALEVIKNMP---MK-----PNSI-VWGALLGACRVHRDAEMAEMAAKQILELDPD 549 (720)
Q Consensus 496 ~~~g~~~eA~~~~~~~~---~~-----p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 549 (720)
.+.|++++|.++|++.. .+ .+.. .+...+-.+...||...|...+++..+.+|.
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 88888888888887751 11 1111 1222333455678888888888888888775
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.082 Score=53.90 Aligned_cols=162 Identities=20% Similarity=0.155 Sum_probs=106.7
Q ss_pred HHhhhhhhcCCHHHHHHHHHhccCC---C----HHHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 005000 388 ALIDMYCKCGDVEKAQRVFREMLRK---D----KFTWTAMIVGLAI---NGHGDKSLDMFSQMLRASIIPDEVTYVGVLS 457 (720)
Q Consensus 388 ~li~~y~~~g~~~~A~~~~~~~~~~---~----~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 457 (720)
.|+-.|-...+++.-.++.+.+... + ...--...-++-+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4555677888888888888888543 1 1112223344555 7888999999988766666777778777666
Q ss_pred HHHh---------cCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH----HHHHH---Hh-C------CCC
Q 005000 458 ACTH---------TGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNE----ALEVI---KN-M------PMK 514 (720)
Q Consensus 458 a~~~---------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~e----A~~~~---~~-~------~~~ 514 (720)
.|-. ....++|+..|.+. +.+.|+..+--.++.++.-+|...+ ..++- .. . .-.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5532 22467788888754 4566766555455555555554222 22222 11 1 122
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 005000 515 PNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA 552 (720)
Q Consensus 515 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 552 (720)
.|-..+.+++.++.-.|+++.|.+++++++++.|+...
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 35566689999999999999999999999999987653
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0083 Score=62.35 Aligned_cols=113 Identities=10% Similarity=0.018 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCC------CCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 005000 152 VQNALISTYCLCGEVDMARGIFDVSYK------DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSA 225 (720)
Q Consensus 152 ~~~~li~~y~~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 225 (720)
....+++......+++++..++-+... --..+..++|+.|.+.|..++++.+++.=...|+-||.+|++.++..
T Consensus 68 dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~ 147 (429)
T PF10037_consen 68 DLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDH 147 (429)
T ss_pred HHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHH
Confidence 334444444444555555555433221 11234568888888888888888888888888888888888888888
Q ss_pred HhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Q 005000 226 CAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAAC 264 (720)
Q Consensus 226 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 264 (720)
+.+.|++..|.++...|...+...+..++..-+..+.+.
T Consensus 148 fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 148 FLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888887777666666655555555444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0036 Score=64.36 Aligned_cols=64 Identities=14% Similarity=-0.035 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch---HHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 516 NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAV---YVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 516 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
+...|+.+..+|...|++++|+..++++++++|++..+ |+.++.+|..+|+.++|.+.+++..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555555555555566666666666666655555432 55555556556666665555555554
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.012 Score=49.79 Aligned_cols=86 Identities=19% Similarity=0.049 Sum_probs=57.8
Q ss_pred HHHHHhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CcchHHHHHhHhhh
Q 005000 492 VDLLGRAGHLNEALEVIKNM---PMKPN--SIVWGALLGACRVHRDAEMAEMAAKQILELDPD---NEAVYVLLCNIYAA 563 (720)
Q Consensus 492 i~~~~~~g~~~eA~~~~~~~---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 563 (720)
..++-..|+.++|..+|++. +.... ...+-.+.+.++..|++++|..++++.++..|+ +......++.++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 44555667777777776665 22211 234556667788888888888888888877776 55666667777788
Q ss_pred cCChhHHHHHHHHH
Q 005000 564 CNRWDNFRELRQMI 577 (720)
Q Consensus 564 ~g~~~~a~~~~~~m 577 (720)
.|++++|.+.+-..
T Consensus 88 ~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 88 LGRPKEALEWLLEA 101 (120)
T ss_pred CCCHHHHHHHHHHH
Confidence 88888888765443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0033 Score=48.20 Aligned_cols=64 Identities=23% Similarity=0.292 Sum_probs=53.4
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 005000 493 DLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVL 556 (720)
Q Consensus 493 ~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 556 (720)
..|.+.+++++|.+.++.+ ...| +...|......+...|++++|...++++++..|+++.....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 5678899999999999887 5556 56778888888999999999999999999999987665443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0079 Score=55.29 Aligned_cols=118 Identities=22% Similarity=0.290 Sum_probs=84.4
Q ss_pred CCCcccHHHHHHHHh-----ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHH
Q 005000 112 RPDNYTFPFLLKGFT-----RDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNA 186 (720)
Q Consensus 112 ~p~~~t~~~ll~~~~-----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~ 186 (720)
..|..+|..++..+. +.|.++.....+..|.+.|++.|..+|+.|++.+=+ |.+- -..+|+.+-
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F--------- 112 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF--------- 112 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh---------
Confidence 356777877777775 457888889999999999999999999999998765 3332 112222111
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCc-hHHHHHHHHHHH
Q 005000 187 MFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDL-DVGKRAHRYVKE 244 (720)
Q Consensus 187 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~ 244 (720)
- -.-.+-+-|++++++|...|+.||..|+..++..+++.+.. ....++.=+|.+
T Consensus 113 --~--hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 113 --M--HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred --c--cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 0 01234567999999999999999999999999999877653 344444444444
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.012 Score=47.93 Aligned_cols=78 Identities=9% Similarity=0.041 Sum_probs=65.2
Q ss_pred HHHHHHHcCCCchHHHHHHHHhHhCCC-CCCcccHHHHHHHHhccC--------ChHHHHHHHHHHHHhCCCCChhHHHH
Q 005000 85 TMIKGYSRIDSHKNGVLIYLDMLKSDV-RPDNYTFPFLLKGFTRDI--------AVEFGKELHCHVLKFGFDSSVFVQNA 155 (720)
Q Consensus 85 ~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~~~ 155 (720)
..|..+...+++.....+|+.+++.|+ .|+..+|+.++++.++.. .+-..+.+++.++..++.|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 445566667999999999999999999 899999999999987653 34567788999999999999999999
Q ss_pred HHHHHHh
Q 005000 156 LISTYCL 162 (720)
Q Consensus 156 li~~y~~ 162 (720)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 9877654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.27 Score=52.20 Aligned_cols=126 Identities=17% Similarity=0.184 Sum_probs=73.5
Q ss_pred HHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhh
Q 005000 388 ALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDE 467 (720)
Q Consensus 388 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 467 (720)
+-.+++...|+.++|..+. ..+|-.+-++++-+++-.. +..+...+..-+-+...+.-
T Consensus 708 aAAEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~rkld~~----ere~l~~~a~ylk~l~~~gL 765 (1081)
T KOG1538|consen 708 AAAEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIARKLDKA----EREPLLLCATYLKKLDSPGL 765 (1081)
T ss_pred HHHHHhhcccchhhhhhhh------------------hcccHHHHHHHHHhhcchh----hhhHHHHHHHHHhhccccch
Confidence 4456666778887776653 2334444444444443322 33444444445556666777
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHH-HHHHH----------HHHHhcCCHHH
Q 005000 468 GREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP-MKPNSIV-WGALL----------GACRVHRDAEM 535 (720)
Q Consensus 468 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~-~~p~~~~-~~~ll----------~~~~~~g~~~~ 535 (720)
|-++|..|-. ...++++....++|+||..+-++.| +.||+.. |...+ .++.+.|+..+
T Consensus 766 AaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~E 835 (1081)
T KOG1538|consen 766 AAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQRE 835 (1081)
T ss_pred HHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHH
Confidence 7888877631 2356777788888888888888874 4454321 11111 34556666677
Q ss_pred HHHHHHHHHh
Q 005000 536 AEMAAKQILE 545 (720)
Q Consensus 536 a~~~~~~~~~ 545 (720)
|.++++++..
T Consensus 836 A~~vLeQLtn 845 (1081)
T KOG1538|consen 836 AVQVLEQLTN 845 (1081)
T ss_pred HHHHHHHhhh
Confidence 7777766654
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0098 Score=58.30 Aligned_cols=93 Identities=11% Similarity=0.082 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---cchHHHHH
Q 005000 487 HYGCMVDLLGRAGHLNEALEVIKNM-PMKPN----SIVWGALLGACRVHRDAEMAEMAAKQILELDPDN---EAVYVLLC 558 (720)
Q Consensus 487 ~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 558 (720)
.|..-+..+.+.|++++|...|+.. ...|+ +..+.-+..++...|+++.|...|+++++..|++ +.++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444444445556666666666655 22232 2344455566666777777777777777666553 34455556
Q ss_pred hHhhhcCChhHHHHHHHHHHh
Q 005000 559 NIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 559 ~~~~~~g~~~~a~~~~~~m~~ 579 (720)
.+|...|++++|.++++.+.+
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 666677777777777666654
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0024 Score=43.21 Aligned_cols=42 Identities=31% Similarity=0.438 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHh
Q 005000 518 IVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCN 559 (720)
Q Consensus 518 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 559 (720)
.+|..+..++...|++++|+++++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467888999999999999999999999999999988887764
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.1 Score=50.82 Aligned_cols=174 Identities=11% Similarity=0.055 Sum_probs=105.6
Q ss_pred HHhhhhhhcCCHHHHHHHHHhccCC---CHHH---HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 005000 388 ALIDMYCKCGDVEKAQRVFREMLRK---DKFT---WTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTH 461 (720)
Q Consensus 388 ~li~~y~~~g~~~~A~~~~~~~~~~---~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 461 (720)
.....+.+.|++++|.+.|+.+... +... .-.++.+|.+.+++++|...|++.++....-...-+...+.+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 3455556678888888888888543 1222 233456778888888888888888875322222344333433331
Q ss_pred --cC---------------C---hhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHH
Q 005000 462 --TG---------------M---VDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWG 521 (720)
Q Consensus 462 --~g---------------~---~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~ 521 (720)
.+ + ..+|...|+.++ +.|=...-..+|...+..+..+--. --.
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li----------------~~yP~S~ya~~A~~rl~~l~~~la~-~e~ 179 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV----------------RGYPNSQYTTDATKRLVFLKDRLAK-YEL 179 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHH----------------HHCcCChhHHHHHHHHHHHHHHHHH-HHH
Confidence 11 1 122333344333 3333333344554444433100000 011
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCC---cchHHHHHhHhhhcCChhHHHHHHHHHH
Q 005000 522 ALLGACRVHRDAEMAEMAAKQILELDPDN---EAVYVLLCNIYAACNRWDNFRELRQMIL 578 (720)
Q Consensus 522 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 578 (720)
.+..-|.+.|.+..|..-++.+++.-|+. ..+...+..+|...|..++|.++.+...
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 34456889999999999999999987764 4677788999999999999999877654
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.07 Score=46.93 Aligned_cols=93 Identities=9% Similarity=0.002 Sum_probs=65.6
Q ss_pred hHHhhhhhhcCCHHHHHHHHHhccC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC
Q 005000 387 NALIDMYCKCGDVEKAQRVFREMLR--K-DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTG 463 (720)
Q Consensus 387 ~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 463 (720)
-++...+...|++++|.++|+-+.. | +..-|-.|...+-..|++++|+..|.......+ -|...+-.+..++...|
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcC
Confidence 3455556677888888888887642 2 556777777788888888888888888777542 24456666777778888
Q ss_pred ChhhHHHHHHHHHHHcC
Q 005000 464 MVDEGREYFADMTIQHG 480 (720)
Q Consensus 464 ~~~~a~~~~~~m~~~~~ 480 (720)
+.+.|++.|+......+
T Consensus 118 ~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 118 NVCYAIKALKAVVRICG 134 (157)
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 88888888877764433
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.039 Score=44.96 Aligned_cols=80 Identities=16% Similarity=0.222 Sum_probs=63.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCChHHHHHHHHHHHhcC--------ChhhHHHHHHHHHHHcCCCccHHH
Q 005000 417 WTAMIVGLAINGHGDKSLDMFSQMLRASI-IPDEVTYVGVLSACTHTG--------MVDEGREYFADMTIQHGIEPNEAH 487 (720)
Q Consensus 417 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~m~~~~~~~p~~~~ 487 (720)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. .+-+...+|+.|. ..+++|+.++
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL-~~~lKP~~et 106 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDIL-SNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHH-HhccCCcHHH
Confidence 34456666667999999999999999999 899999999998876543 2445677888886 6678888888
Q ss_pred HHHHHHHHHh
Q 005000 488 YGCMVDLLGR 497 (720)
Q Consensus 488 ~~~li~~~~~ 497 (720)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 8888877654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.02 Score=59.64 Aligned_cols=128 Identities=13% Similarity=0.133 Sum_probs=99.2
Q ss_pred HHHHhHh---CCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHh--CCCCChhHHHHHHHHHHhcCChHHHHHHHhcC
Q 005000 102 IYLDMLK---SDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKF--GFDSSVFVQNALISTYCLCGEVDMARGIFDVS 176 (720)
Q Consensus 102 l~~~m~~---~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~ 176 (720)
++..|.+ .+.+.++..+..++..+....+++.+..++-..... ....-..+..++|..|.+.|..+.+..+++.-
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~ 129 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR 129 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence 4444432 334456777888888888888888888877776654 22233456679999999999999999998643
Q ss_pred ----CCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcC
Q 005000 177 ----YKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKL 229 (720)
Q Consensus 177 ----~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 229 (720)
.-||..++|.+|..+.+.|++..|.++..+|...+...+..|+...+.+|.+-
T Consensus 130 ~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 130 LQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 34899999999999999999999999999998888888888888888887765
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.92 Score=46.59 Aligned_cols=74 Identities=15% Similarity=0.168 Sum_probs=59.5
Q ss_pred HHHHHHhCCCCC----CHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHH
Q 005000 504 ALEVIKNMPMKP----NSIVWGALLGA--CRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMI 577 (720)
Q Consensus 504 A~~~~~~~~~~p----~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 577 (720)
-+.++++.++.| +...-|.|..| ...+|++.++.-...=+.+..| ++.+|..++-......++++|...+..+
T Consensus 443 Le~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 443 LEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 344566666655 34456667666 6789999999988888899999 7899999999999999999999998765
Q ss_pred H
Q 005000 578 L 578 (720)
Q Consensus 578 ~ 578 (720)
.
T Consensus 522 P 522 (549)
T PF07079_consen 522 P 522 (549)
T ss_pred C
Confidence 3
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.017 Score=53.18 Aligned_cols=99 Identities=17% Similarity=0.281 Sum_probs=73.9
Q ss_pred HHHHHHhc--cCCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc------------
Q 005000 402 AQRVFREM--LRKDKFTWTAMIVGLAIN-----GHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHT------------ 462 (720)
Q Consensus 402 A~~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~------------ 462 (720)
-...|+.. ..++..+|..++..|.+. |..+=....+..|.+.|+.-|..+|+.||..+=+.
T Consensus 33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 33 HEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 34455555 456777777777777653 56666677788888888888888888888776542
Q ss_pred ----CChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 005000 463 ----GMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHL 501 (720)
Q Consensus 463 ----g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 501 (720)
.+-+-|++++++|. .+|+-||.+++..+++.+++.+..
T Consensus 113 ~hyp~Qq~c~i~lL~qME-~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQME-NNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred ccCcHHHHHHHHHHHHHH-HcCCCCcHHHHHHHHHHhccccHH
Confidence 22466889999994 889999999999999998877753
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.64 Score=47.08 Aligned_cols=147 Identities=15% Similarity=0.061 Sum_probs=76.0
Q ss_pred hccCcHHHHHHHHHHHHHcCCCCChhHhhHHhh--hhhhcCCHHHHHHHHHhccCCCHH---------------HHHHHH
Q 005000 359 ANLGALELGEWVKTYIDKNKVKNDIFVGNALID--MYCKCGDVEKAQRVFREMLRKDKF---------------TWTAMI 421 (720)
Q Consensus 359 ~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~--~y~~~g~~~~A~~~~~~~~~~~~~---------------~~~~li 421 (720)
...++.+.|.++-..+.+..- .+ .+..+++ ++--.++.+.|..-|++...-|+. .|.-=.
T Consensus 180 ~~~~~~~~a~~ea~~ilkld~-~n--~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~g 256 (486)
T KOG0550|consen 180 AFLGDYDEAQSEAIDILKLDA-TN--AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERG 256 (486)
T ss_pred hhcccchhHHHHHHHHHhccc-ch--hHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhh
Confidence 345555666555555554331 11 1111111 122345566666666665433221 122223
Q ss_pred HHHHHcCChHHHHHHHHHHHHC---CCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCcc-HHHHHHHHHHHHh
Q 005000 422 VGLAINGHGDKSLDMFSQMLRA---SIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN-EAHYGCMVDLLGR 497 (720)
Q Consensus 422 ~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~ 497 (720)
.-..++|++..|.+.|.+.+.. .++|+...|.....+..+.|+.++|+.--+... .+.|. ...|-.-..++.-
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHLA 333 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHHH
Confidence 3455677777888877777652 234445556666666777777777777766553 23322 1122222234445
Q ss_pred cCCHHHHHHHHHhC
Q 005000 498 AGHLNEALEVIKNM 511 (720)
Q Consensus 498 ~g~~~eA~~~~~~~ 511 (720)
.+.|++|.+-+++.
T Consensus 334 le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHH
Confidence 56777777777665
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.31 Score=47.38 Aligned_cols=51 Identities=14% Similarity=0.150 Sum_probs=29.3
Q ss_pred HhcCCHHHHHHHHhhCCCCCcc------chHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 005000 293 INRGQVDMARQYFDQMPERDYV------LWTAMIDGYLRVNRFREALTLFREMQTSN 343 (720)
Q Consensus 293 ~~~g~~~~A~~~f~~~~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~g 343 (720)
.+.|++++|.+.|+.+....+. ..-.++.+|.+.+++++|...|++..+..
T Consensus 43 ~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 43 LQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 3345555555555544332111 12345567778888888888888877653
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.016 Score=58.38 Aligned_cols=83 Identities=19% Similarity=0.175 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCCCccCCcccEEEECCE
Q 005000 517 SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGV 596 (720)
Q Consensus 517 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~ 596 (720)
..+++.|...|.+.+++..|++...++++++|+|..+.+.-+.+|...|.++.|+..|+++.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~---------------- 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL---------------- 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh----------------
Confidence 4466777888899999999999999999999999999999999999999999999999998762
Q ss_pred EEEEEeCCCCCcCcHHHHHHHHHHHHHHH
Q 005000 597 VHEFVAGDKSHPQTKEIYLKLDEMTSDLK 625 (720)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 625 (720)
.|.+..|-..|..+.++++
T Consensus 321 ----------~P~Nka~~~el~~l~~k~~ 339 (397)
T KOG0543|consen 321 ----------EPSNKAARAELIKLKQKIR 339 (397)
T ss_pred ----------CCCcHHHHHHHHHHHHHHH
Confidence 4566677666666665554
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.64 E-value=1.3 Score=47.73 Aligned_cols=186 Identities=13% Similarity=0.078 Sum_probs=100.4
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCC-----eeeHHHHHHHHHhCCChhHHHH
Q 005000 128 DIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDD-----VVTWNAMFSGYKRVKQFDETRK 202 (720)
Q Consensus 128 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~ 202 (720)
.|.+++|.+++-.+-++. .-|.++.+.|++-...++++.....+ ..+|+.+...++....|++|.+
T Consensus 747 ~g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hcchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366677777665554432 34566667777777777766543321 2356666666666666777766
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCc
Q 005000 203 LFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDV 282 (720)
Q Consensus 203 l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~ 282 (720)
.|..-... ...+.++.+..++++-..+.. .++.+....-.+.+|+.+.|.-++|.+.|-+-..|.
T Consensus 818 yY~~~~~~---------e~~~ecly~le~f~~LE~la~-----~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk- 882 (1189)
T KOG2041|consen 818 YYSYCGDT---------ENQIECLYRLELFGELEVLAR-----TLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK- 882 (1189)
T ss_pred HHHhccch---------HhHHHHHHHHHhhhhHHHHHH-----hcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-
Confidence 66543211 122333333333333322222 234455666667777777777777777766554432
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccch--------------HHHHHHHHhcCChhHHHHHHHHHHH
Q 005000 283 ISWTAIVTGYINRGQVDMARQYFDQMPERDYVLW--------------TAMIDGYLRVNRFREALTLFREMQT 341 (720)
Q Consensus 283 ~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~--------------~~li~~~~~~g~~~~A~~~~~~m~~ 341 (720)
+.+..+...+++.+|.++-+...-|.+.+. -.-|..+.+.|++-+|-+++.+|.+
T Consensus 883 ----aAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 883 ----AAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 233445555666666666555443322221 1123445566666666666666643
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.027 Score=56.24 Aligned_cols=129 Identities=9% Similarity=0.084 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHh-cCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 005000 450 VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR-AGHLNEALEVIKNM--PMKPNSIVWGALLGA 526 (720)
Q Consensus 450 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~g~~~eA~~~~~~~--~~~p~~~~~~~ll~~ 526 (720)
.+|..++...-+.+..+.|+.+|.+..+ .-..+..+|-....+-.+ .++.+.|.++|+.. .+..+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~--~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARK--DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4678888888888899999999999962 222345666666666555 56666699999987 344578899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCc---chHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 527 CRVHRDAEMAEMAAKQILELDPDNE---AVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 527 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
+...|+.+.+..++++++..-|.+. ..|...+..=.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998866643 47777888888899999999999888763
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.13 Score=48.48 Aligned_cols=137 Identities=15% Similarity=0.145 Sum_probs=97.2
Q ss_pred chHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC-----hhHhhHH
Q 005000 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKND-----IFVGNAL 389 (720)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~-----~~~~~~l 389 (720)
..+.++..+.-.|.+.-.+.++++.++...+.+......+.+.-.+.|+.+.+...++.+.+..-..+ ..+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34566777777788888888888888876666777777788888888999988888887766433333 3333344
Q ss_pred hhhhhhcCCHHHHHHHHHhccCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHH
Q 005000 390 IDMYCKCGDVEKAQRVFREMLRK---DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYV 453 (720)
Q Consensus 390 i~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 453 (720)
...|.-.+++..|...|.+++.. |++.-|.-.-+..-.|+..+|++..+.|... .|...+-.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 45566678888888888887644 5566666555666678888899988888875 45444333
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.091 Score=44.43 Aligned_cols=107 Identities=13% Similarity=0.054 Sum_probs=61.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCC--CChhHhhHHhhhh
Q 005000 318 AMIDGYLRVNRFREALTLFREMQTSNIRPD--EFTIVSILTACANLGALELGEWVKTYIDKNKVK--NDIFVGNALIDMY 393 (720)
Q Consensus 318 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~--~~~~~~~~li~~y 393 (720)
.+..++-..|+.++|+.+|++....|.... ...+..+-+.+...|++++|..+++........ .+..+...+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 445667788889999999998888876554 234445556666777777777777766654211 0112222233344
Q ss_pred hhcCCHHHHHHHHHhccCCCHHHHHHHHHHH
Q 005000 394 CKCGDVEKAQRVFREMLRKDKFTWTAMIVGL 424 (720)
Q Consensus 394 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 424 (720)
...|+.++|.+.+-...-++...|.--|..|
T Consensus 86 ~~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666665554433333343333333
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.22 Score=52.88 Aligned_cols=127 Identities=17% Similarity=0.152 Sum_probs=67.6
Q ss_pred cccHHHHHHHHhccCChHHHHHH--HHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHH
Q 005000 115 NYTFPFLLKGFTRDIAVEFGKEL--HCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192 (720)
Q Consensus 115 ~~t~~~ll~~~~~~~~~~~a~~~--~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~ 192 (720)
+-.|+..=++|.+.++...-+-+ ++.+.++|-.|+... +...++-.|++.+|.++|.
T Consensus 598 AL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk------------------ 656 (1081)
T KOG1538|consen 598 ALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFK------------------ 656 (1081)
T ss_pred hhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHH------------------
Confidence 33455556667666665443333 345566676666554 3345666789999988885
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 005000 193 RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALE 272 (720)
Q Consensus 193 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 272 (720)
+.|.-..|+++|.+|+--. ...-+...|+.++-+.+.+.-.+... ++.--.+...++...|+.++|..
T Consensus 657 ~~G~enRAlEmyTDlRMFD----------~aQE~~~~g~~~eKKmL~RKRA~WAr--~~kePkaAAEmLiSaGe~~KAi~ 724 (1081)
T KOG1538|consen 657 RSGHENRALEMYTDLRMFD----------YAQEFLGSGDPKEKKMLIRKRADWAR--NIKEPKAAAEMLISAGEHVKAIE 724 (1081)
T ss_pred HcCchhhHHHHHHHHHHHH----------HHHHHhhcCChHHHHHHHHHHHHHhh--hcCCcHHHHHHhhcccchhhhhh
Confidence 4567777888777765321 11223344444444443332222110 11111234455666677666665
Q ss_pred HH
Q 005000 273 IF 274 (720)
Q Consensus 273 ~~ 274 (720)
+.
T Consensus 725 i~ 726 (1081)
T KOG1538|consen 725 IC 726 (1081)
T ss_pred hh
Confidence 43
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.098 Score=52.45 Aligned_cols=131 Identities=8% Similarity=-0.056 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHH----HHCCCCC-ChHHHHHHHHHHHhcCChhhHHHHHHHHHH---HcC-CCccHH
Q 005000 416 TWTAMIVGLAINGHGDKSLDMFSQM----LRASIIP-DEVTYVGVLSACTHTGMVDEGREYFADMTI---QHG-IEPNEA 486 (720)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~l~~~m----~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~---~~~-~~p~~~ 486 (720)
.|..+...|.-.|+++.|+..-+.- .+.|-+. ....+..+.+++.-.|+++.|.+.|+.... +.| -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 3444444444556666665544332 1222111 113555566666666777777766654320 111 112234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005000 487 HYGCMVDLLGRAGHLNEALEVIKNM-------P-MKPNSIVWGALLGACRVHRDAEMAEMAAKQILEL 546 (720)
Q Consensus 487 ~~~~li~~~~~~g~~~eA~~~~~~~-------~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (720)
...+|...|.-...+++|+.++.+- + .--...++-+|..++...|..++|...+++.+++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 4445666666666677777666543 1 1123456667777887788888887777776653
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.056 Score=53.04 Aligned_cols=101 Identities=12% Similarity=0.095 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHH
Q 005000 451 TYVGVLSACTHTGMVDEGREYFADMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM----PMKP-NSIVWGALL 524 (720)
Q Consensus 451 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~p-~~~~~~~ll 524 (720)
.|...+......|++++|...|+.+.+.+.-.+ ....+-.+...|...|++++|...|+.+ +..| ....|..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344433333455677777777776664432111 0234455777777777777777777776 2222 244555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 005000 525 GACRVHRDAEMAEMAAKQILELDPDNE 551 (720)
Q Consensus 525 ~~~~~~g~~~~a~~~~~~~~~~~p~~~ 551 (720)
..+...|+.+.|...++++++..|++.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 777788999999999999999999864
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.39 E-value=2 Score=46.98 Aligned_cols=107 Identities=19% Similarity=0.289 Sum_probs=75.8
Q ss_pred HHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhh
Q 005000 388 ALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDE 467 (720)
Q Consensus 388 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 467 (720)
--+.-+...|+..+|.++-.+..-||-..|-.-+.+++..+++++-+++-+.+.. .+-|.-...+|.+.|+.++
T Consensus 689 dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~E 762 (829)
T KOG2280|consen 689 DTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDE 762 (829)
T ss_pred HHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHH
Confidence 3344455678888888888888888888888888888888888776665554331 3455567788888888888
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 005000 468 GREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKN 510 (720)
Q Consensus 468 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~ 510 (720)
|.+++-+.. |.. -.+.+|.+.|++.+|.++--+
T Consensus 763 A~KYiprv~---~l~-------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 763 AKKYIPRVG---GLQ-------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HhhhhhccC---ChH-------HHHHHHHHhccHHHHHHHHHH
Confidence 888876442 211 467788888888888776543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.43 Score=45.18 Aligned_cols=133 Identities=14% Similarity=0.075 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHH-----H
Q 005000 416 TWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYG-----C 490 (720)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-----~ 490 (720)
.-+.++..+.-+|.+.-.+.++.+.++...+-+......+.+.-.+.|+.+.|..+|++..+..+ ..+....+ .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHhh
Confidence 44566677777888888888899988866555667777788888888999999999987653322 22222222 2
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005000 491 MVDLLGRAGHLNEALEVIKNMP-MKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPD 549 (720)
Q Consensus 491 li~~~~~~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 549 (720)
+...|.-++++.+|...+++.+ .+| |++..|+-.-...-.|+...|.+..+.+++..|.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 3334555666777777776663 223 3444444333344456677777777777777765
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.15 E-value=2.4 Score=45.40 Aligned_cols=410 Identities=12% Similarity=0.105 Sum_probs=226.5
Q ss_pred CCcchHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCcccH-HHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 005000 78 PSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTF-PFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNAL 156 (720)
Q Consensus 78 ~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 156 (720)
-+...|+++|..--+..+.+.+...+..++.. .|..+-| .....-=.+.|..+.+.++|+..+. |++..+..|...
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y 119 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSY 119 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHH
Confidence 34556888887666666666677778887753 3544432 2222223567888999999998887 677777788777
Q ss_pred HHHHHh-cCChHHHHHHHhcCCC------CCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHh--
Q 005000 157 ISTYCL-CGEVDMARGIFDVSYK------DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACA-- 227 (720)
Q Consensus 157 i~~y~~-~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~-- 227 (720)
+..... .|+.+.-++.|+.... .....|-..|.--...+++.....++++.++... .-|+....-+.
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~----~~~~~~f~~f~~~ 195 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPL----HQLNRHFDRFKQL 195 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhh----hHhHHHHHHHHHH
Confidence 765543 4677777777775432 3455788888888888899999999998876421 11222221111
Q ss_pred -cC------CCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHH
Q 005000 228 -KL------KDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDM 300 (720)
Q Consensus 228 -~~------~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 300 (720)
+. ...+++.++-....+.. .-...+.. .+.
T Consensus 196 l~~~~~~~l~~~d~~~~l~~~~~~~~-------------~~~~~~~~------------------------------~e~ 232 (577)
T KOG1258|consen 196 LNQNEEKILLSIDELIQLRSDVAERS-------------KITHSQEP------------------------------LEE 232 (577)
T ss_pred HhcCChhhhcCHHHHHHHhhhHHhhh-------------hcccccCh------------------------------hHH
Confidence 10 01111111111111000 00000000 000
Q ss_pred HHHHHhhCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHc---
Q 005000 301 ARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN--- 377 (720)
Q Consensus 301 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~--- 377 (720)
-....+....+. +..+++.....+....+ ..+| -........+..++.-++.
T Consensus 233 ~~~~v~~~~~~s--------------~~l~~~~~~l~~~~~~~----~~~~-------~~s~~~~~kr~~fE~~IkrpYf 287 (577)
T KOG1258|consen 233 LEIGVKDSTDPS--------------KSLTEEKTILKRIVSIH----EKVY-------QKSEEEEEKRWGFEEGIKRPYF 287 (577)
T ss_pred HHHHHhhccCcc--------------chhhHHHHHHHHHHHHH----HHHH-------HhhHhHHHHHHhhhhhcccccc
Confidence 000000000000 00111111100000000 0000 0000011111111111111
Q ss_pred ----CCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChH
Q 005000 378 ----KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK---DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV 450 (720)
Q Consensus 378 ----~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 450 (720)
-..++...|...++.-.+.|+.+.+.-.|+...-| -...|--.+.-....|+.+-|..++....+--++-...
T Consensus 288 hvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~ 367 (577)
T KOG1258|consen 288 HVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPI 367 (577)
T ss_pred ccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcH
Confidence 11234567888888888899999999999888654 33456666655556688888888777766543332222
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccH-HHHHHHHHHHHhcCCHHHHH---HHHHhC-CCCCCHHHHHHHH-
Q 005000 451 TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNE-AHYGCMVDLLGRAGHLNEAL---EVIKNM-PMKPNSIVWGALL- 524 (720)
Q Consensus 451 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~eA~---~~~~~~-~~~p~~~~~~~ll- 524 (720)
+-..-..-+-..|+++.|..+++.+..++ |+. ..-.--+.+..|.|..+.+. +++... +.+-+..+...+.
T Consensus 368 i~L~~a~f~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~ 444 (577)
T KOG1258|consen 368 IHLLEARFEESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYV 444 (577)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHH
Confidence 22222233567899999999999997443 543 33334556778899998888 555554 2222322222222
Q ss_pred ---H-HHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcC
Q 005000 525 ---G-ACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACN 565 (720)
Q Consensus 525 ---~-~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 565 (720)
. -+...++.+.|..++.++.+..|++-..|..+.++....+
T Consensus 445 ~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 445 KFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 2 2456789999999999999999999999999988876665
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.0083 Score=46.65 Aligned_cols=60 Identities=17% Similarity=0.121 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC---CcchHHHHHhHhhhcCChhHHHHHHHHHH
Q 005000 519 VWGALLGACRVHRDAEMAEMAAKQILEL----DPD---NEAVYVLLCNIYAACNRWDNFRELRQMIL 578 (720)
Q Consensus 519 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 578 (720)
+++.+...+...|++++|+..+++++++ .++ -..++..++.+|...|++++|.+.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555666666666666666666666643 111 23456677777777777777777776654
|
... |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.035 Score=46.27 Aligned_cols=90 Identities=24% Similarity=0.223 Sum_probs=74.6
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----cchHHHHHhHhhhcCC
Q 005000 493 DLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDN----EAVYVLLCNIYAACNR 566 (720)
Q Consensus 493 ~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~ 566 (720)
-++...|+++.|++.|.+. .+-| ....||.-..+++-.|+.++|..-+++++++.-+. -..|+..+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3677889999999999886 3334 67889999999999999999999999999985332 2468888999999999
Q ss_pred hhHHHHHHHHHHhCCC
Q 005000 567 WDNFRELRQMILDRGI 582 (720)
Q Consensus 567 ~~~a~~~~~~m~~~~~ 582 (720)
-+.|+.-|+..-+-|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999999998877664
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.09 E-value=1.4 Score=42.04 Aligned_cols=194 Identities=20% Similarity=0.168 Sum_probs=133.9
Q ss_pred hhHhhHHhhhhhhcCCHHHHHHHHHhccC-----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 005000 383 IFVGNALIDMYCKCGDVEKAQRVFREMLR-----KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLS 457 (720)
Q Consensus 383 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 457 (720)
..........+...+.+..+...+..... .....+......+...++...+.+.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 45556667777777777777777776542 2445566666677777778888888888776543331 22222222
Q ss_pred -HHHhcCChhhHHHHHHHHHHHcCCCc----cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHh
Q 005000 458 -ACTHTGMVDEGREYFADMTIQHGIEP----NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN--SIVWGALLGACRV 529 (720)
Q Consensus 458 -a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~--~~~~~~ll~~~~~ 529 (720)
.+...|+++.+...+..... ..| ....+......+...++.++|...+.+. ...|+ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 67788888888888887742 233 3344444445567788888888888876 33333 5677788888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 530 HRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 530 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
.++++.+...+.++.+..|.....+..++..+...|.++++...+......
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888899999999999888876666777777777777788888877776553
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.011 Score=46.02 Aligned_cols=60 Identities=18% Similarity=0.223 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-----CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005000 487 HYGCMVDLLGRAGHLNEALEVIKNM-----PMK---PN-SIVWGALLGACRVHRDAEMAEMAAKQILEL 546 (720)
Q Consensus 487 ~~~~li~~~~~~g~~~eA~~~~~~~-----~~~---p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (720)
+|+.+...|.+.|++++|++.+++. ... |+ ..++..+...+...|++++|+..+++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4445555555555555555555443 011 22 445666667777777777777777776653
|
... |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.11 Score=52.51 Aligned_cols=138 Identities=13% Similarity=0.090 Sum_probs=99.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 005000 421 IVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGH 500 (720)
Q Consensus 421 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 500 (720)
.+.|.+.|++..|...|++.+.. |. +...-+.++.... .. .-...+..+.-.|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~-~~--------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKA-EA--------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHH-HH--------HHHHHhhHHHHHHHhhhh
Confidence 45677788888888887776542 10 0111111222111 11 123456778888999999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHH-HHHHHHH
Q 005000 501 LNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNF-RELRQMI 577 (720)
Q Consensus 501 ~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m 577 (720)
+.+|++.-++. ..+| |.-..---..+|...|+++.|+..|+++++++|+|-.+-..|+.+-.+...+++. .++|..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998886 4554 6777778889999999999999999999999999999988998888887776655 6788888
Q ss_pred HhC
Q 005000 578 LDR 580 (720)
Q Consensus 578 ~~~ 580 (720)
-.+
T Consensus 353 F~k 355 (397)
T KOG0543|consen 353 FAK 355 (397)
T ss_pred hhc
Confidence 654
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.96 E-value=2.1 Score=43.14 Aligned_cols=240 Identities=15% Similarity=0.151 Sum_probs=130.5
Q ss_pred hcCCHHHHHHHHhhcCCC-Cch--hHHHHHHHHHhcCCHHHHHHHHhhCCCC---CccchHHHHHHHHhcCChhHHHHHH
Q 005000 263 ACGEMGFALEIFGNIKNK-DVI--SWTAIVTGYINRGQVDMARQYFDQMPER---DYVLWTAMIDGYLRVNRFREALTLF 336 (720)
Q Consensus 263 ~~g~~~~A~~~~~~~~~~-~~~--~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~ 336 (720)
-.|+.+.|.+-|+.|... ... -..-|.-.--+.|..+.|...-+...+. -...|.+.+...+..|+++.|+++.
T Consensus 132 ~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLv 211 (531)
T COG3898 132 LEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLV 211 (531)
T ss_pred hcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHH
Confidence 346666666666666542 111 1111222223556666666666555433 2346788899999999999999999
Q ss_pred HHHHHCC-CCCCHHH--HHHHHHHHhc---cCcHHHHHHHHHHHHHcCCCCChhH-hhHHhhhhhhcCCHHHHHHHHHhc
Q 005000 337 REMQTSN-IRPDEFT--IVSILTACAN---LGALELGEWVKTYIDKNKVKNDIFV-GNALIDMYCKCGDVEKAQRVFREM 409 (720)
Q Consensus 337 ~~m~~~g-~~p~~~t--~~~ll~~~~~---~~~~~~a~~i~~~~~~~~~~~~~~~-~~~li~~y~~~g~~~~A~~~~~~~ 409 (720)
+.-.... +.++..- -..++.+-+. ..+...++..-.+..+ +.||..- .-.-...+.+.|++.++-.+++.+
T Consensus 212 d~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~a 289 (531)
T COG3898 212 DAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETA 289 (531)
T ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHH
Confidence 8766543 4454432 2223333211 1234455544444444 3344221 122345677778888887777777
Q ss_pred cC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCCh-HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccH
Q 005000 410 LR--KDKFTWTAMIVGLAINGHGDKSLDMFSQMLR-ASIIPDE-VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNE 485 (720)
Q Consensus 410 ~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 485 (720)
-+ |.+..|. .|....-.+.++.-+++... ..++||. .....+..+-...|++..|..--+... ...|..
T Consensus 290 WK~ePHP~ia~----lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pre 362 (531)
T COG3898 290 WKAEPHPDIAL----LYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRE 362 (531)
T ss_pred HhcCCChHHHH----HHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchh
Confidence 33 3333222 23332333334444444332 2245554 455556666667777777666555443 456777
Q ss_pred HHHHHHHHHHHhc-CCHHHHHHHHHhC
Q 005000 486 AHYGCMVDLLGRA-GHLNEALEVIKNM 511 (720)
Q Consensus 486 ~~~~~li~~~~~~-g~~~eA~~~~~~~ 511 (720)
..|..|.+.-.-. |+-.++...+-+.
T Consensus 363 s~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 363 SAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred hHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 7777777665433 7777777766665
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.66 Score=43.84 Aligned_cols=167 Identities=10% Similarity=0.060 Sum_probs=86.0
Q ss_pred HhhhhhhcCCHHHHHHHHHhccCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 005000 389 LIDMYCKCGDVEKAQRVFREMLRK------DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHT 462 (720)
Q Consensus 389 li~~y~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 462 (720)
....+...|++++|.+.|+.+... -..+.-.++.++.+.|++++|...|+++++.-..-...-+...+.+.+.-
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 344455667777777777776421 12344455666677777777777777766632111112222222222110
Q ss_pred -------------CChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005000 463 -------------GMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRV 529 (720)
Q Consensus 463 -------------g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~ 529 (720)
+...+|...| ..++.-|=......+|...+..+...- ...-..+...|.+
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~----------------~~li~~yP~S~y~~~A~~~l~~l~~~l-a~~e~~ia~~Y~~ 153 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEF----------------EELIKRYPNSEYAEEAKKRLAELRNRL-AEHELYIARFYYK 153 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHH----------------HHHHHH-TTSTTHHHHHHHHHHHHHHH-HHHHHHHHHHHHC
T ss_pred HhCccchhcccChHHHHHHHHHH----------------HHHHHHCcCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 0111222222 233333333444444444443331000 0001224466889
Q ss_pred cCCHHHHHHHHHHHHhcCCCCc---chHHHHHhHhhhcCChhHHHH
Q 005000 530 HRDAEMAEMAAKQILELDPDNE---AVYVLLCNIYAACNRWDNFRE 572 (720)
Q Consensus 530 ~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~ 572 (720)
.|.+..|..-++.+++.-|+.+ .+...++..|.+.|..+.+..
T Consensus 154 ~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 154 RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 9999999999999999988853 456778888999998885443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.77 E-value=3.8 Score=44.51 Aligned_cols=324 Identities=13% Similarity=0.164 Sum_probs=150.5
Q ss_pred cCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC----HhhHHHHHHHHhcCCCchHHHHH
Q 005000 163 CGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPT----SVTIVLVLSACAKLKDLDVGKRA 238 (720)
Q Consensus 163 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~ 238 (720)
-|++++|++++-.+.++|.. |..+.+.|+|-...++++. -|-..| ...+..+-..++....++.|.+.
T Consensus 747 ~g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred hcchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888888888777776653 5666677777776666543 111111 23455555555555556666555
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccchHH
Q 005000 239 HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTA 318 (720)
Q Consensus 239 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~ 318 (720)
+..-.. ....+.+|.+..++++-..+-..+++ |....-.|..++.+.|.-++|.+.|-+-..|. +
T Consensus 819 Y~~~~~---------~e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----a 883 (1189)
T KOG2041|consen 819 YSYCGD---------TENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----A 883 (1189)
T ss_pred HHhccc---------hHhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----H
Confidence 543211 11234455554455544444444433 22334445556666666666665554433331 2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCC
Q 005000 319 MIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGD 398 (720)
Q Consensus 319 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~ 398 (720)
.+..|...+++.+|.++-+... -|...|+ +. ..+.++ +.+.. ..--|.++.+.|+
T Consensus 884 Av~tCv~LnQW~~avelaq~~~----l~qv~tl---ia--------k~aaql---l~~~~-------~~eaIe~~Rka~~ 938 (1189)
T KOG2041|consen 884 AVHTCVELNQWGEAVELAQRFQ----LPQVQTL---IA--------KQAAQL---LADAN-------HMEAIEKDRKAGR 938 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc----chhHHHH---HH--------HHHHHH---Hhhcc-------hHHHHHHhhhccc
Confidence 3344555556666655544332 1222221 10 011111 11111 1123566777887
Q ss_pred HHHHHHHHHhccCCCHH---HHHHHHH----HHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHH
Q 005000 399 VEKAQRVFREMLRKDKF---TWTAMIV----GLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREY 471 (720)
Q Consensus 399 ~~~A~~~~~~~~~~~~~---~~~~li~----~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 471 (720)
.-+|.+++.+|.++... .+..+=. +..-..+..++++-.++....|...|... +...|...++-++
T Consensus 939 ~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri 1011 (1189)
T KOG2041|consen 939 HLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRI 1011 (1189)
T ss_pred chhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHH
Confidence 77777777777433111 1111111 11111233344444444444443333221 2233334444444
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005000 472 FADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM----PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE 545 (720)
Q Consensus 472 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 545 (720)
.+..- . -....|+-.|.+--...|..+.|++.--.+ .+-|-...|.-|.-+.+..+.+...-+++-++..
T Consensus 1012 ~~n~W--r--gAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~ 1085 (1189)
T KOG2041|consen 1012 LENTW--R--GAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEA 1085 (1189)
T ss_pred HHhhh--h--hHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHh
Confidence 43221 1 123445555556666788888888764443 1223344444443333333334444444444433
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.2 Score=42.07 Aligned_cols=139 Identities=14% Similarity=0.171 Sum_probs=77.8
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 005000 426 INGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEAL 505 (720)
Q Consensus 426 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~ 505 (720)
-.|..++..++..+..... +..-++-++--....-+-+-..+.++.+-+-+ | ...+|++....
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiF----D----------is~C~NlKrVi 76 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIF----D----------ISKCGNLKRVI 76 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS---------------GGG-S-THHHH
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhc----C----------chhhcchHHHH
Confidence 3566666666666655431 23333333333233333333334443332111 1 12345555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCCCc
Q 005000 506 EVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIK 583 (720)
Q Consensus 506 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 583 (720)
..+-.+. .+..-..-.+.+....|+-++-.+++..+.+.+..+|....-++++|.+.|+..++.++++++-++|++
T Consensus 77 ~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 77 ECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 5554443 234445566788889999999999999998766667899999999999999999999999999999874
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.26 Score=42.56 Aligned_cols=72 Identities=19% Similarity=0.187 Sum_probs=49.7
Q ss_pred HHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc---hHHHHHhHhhhcC
Q 005000 494 LLGRAGHLNEALEVIKNM----PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA---VYVLLCNIYAACN 565 (720)
Q Consensus 494 ~~~~~g~~~eA~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g 565 (720)
...+.|++++|.+.|+.+ |..| ....-..|+.++.+.+++++|...+++.+++.|.++. ++...+-++.++.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~ 98 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQD 98 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHh
Confidence 445677888888887776 3333 3445567888889999999999999999999887653 3444444444443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.08 Score=54.73 Aligned_cols=63 Identities=13% Similarity=0.086 Sum_probs=46.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005000 484 NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPNS----IVWGALLGACRVHRDAEMAEMAAKQILEL 546 (720)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (720)
+...++.+..+|.+.|++++|+..|++. .+.|+. .+|..+..+|...|+.++|+..+++++++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4566777777777778888888877774 566653 35777888888888888888888888776
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.43 E-value=2.3 Score=49.12 Aligned_cols=158 Identities=21% Similarity=0.274 Sum_probs=102.3
Q ss_pred cCCHHHHHHHHhhCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 005000 295 RGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYI 374 (720)
Q Consensus 295 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~ 374 (720)
.+++++|+.-+..+. ...|.-.++.--++|.+++|+.++ +|+...+..+..+|+. .+
T Consensus 893 L~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~------------hL 949 (1265)
T KOG1920|consen 893 LKRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYAD------------HL 949 (1265)
T ss_pred HHHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHH------------HH
Confidence 455666666555554 334555555556677777777664 6777777777666553 12
Q ss_pred HHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChH--HH
Q 005000 375 DKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV--TY 452 (720)
Q Consensus 375 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~ 452 (720)
.+.. .|+--.-+|.++|+.++|.+.|. ..|++.+|+.+-.+|... -|.. +-
T Consensus 950 ~~~~------~~~~Aal~Ye~~GklekAl~a~~------------------~~~dWr~~l~~a~ql~~~---~de~~~~a 1002 (1265)
T KOG1920|consen 950 REEL------MSDEAALMYERCGKLEKALKAYK------------------ECGDWREALSLAAQLSEG---KDELVILA 1002 (1265)
T ss_pred HHhc------cccHHHHHHHHhccHHHHHHHHH------------------HhccHHHHHHHHHhhcCC---HHHHHHHH
Confidence 2211 23344567999999999987654 468899999888876532 1222 22
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 005000 453 VGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511 (720)
Q Consensus 453 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~ 511 (720)
..|.+-+...++.-+|-++..+.. -.|. -.+..|+++-.+++|..+....
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~----sd~~-----~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYL----SDPE-----EAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHh----cCHH-----HHHHHHhhHhHHHHHHHHHHhc
Confidence 456777888888888888876543 2232 3466788888888888887665
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.063 Score=47.75 Aligned_cols=61 Identities=26% Similarity=0.176 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 519 VWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 519 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
....++..+...|+++.|...+++++..+|-+...|..++.+|...|+..+|.++++.+..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4556777788899999999999999999999999999999999999999999999888754
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.24 Score=51.47 Aligned_cols=77 Identities=12% Similarity=0.103 Sum_probs=48.4
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHH
Q 005000 502 NEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMIL 578 (720)
Q Consensus 502 ~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 578 (720)
.+|.++.++. .+.| |+.....+..+....++++.|...++++..++|+.+.++...+.+..-.|+.++|.+.+++..
T Consensus 321 ~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 321 QKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3444444443 3344 555555555555666667777777777777777777777777777777777777777666543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.39 E-value=3.9 Score=42.12 Aligned_cols=131 Identities=13% Similarity=0.052 Sum_probs=85.4
Q ss_pred CCChhHhhHHhcccccccCChHHHHHHhccCCCCCc---chHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCcccHHHH
Q 005000 45 LTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSV---CLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFL 121 (720)
Q Consensus 45 ~~~~~~~~~ll~~~y~~~g~~~~A~~~f~~~~~~~~---~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 121 (720)
+.|...|-.||+- |...|..+..++++++|..|-. .+|..-|++-....+++....+|.+.+..... ...|..-
T Consensus 39 PtnI~S~fqLiq~-~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~--ldLW~lY 115 (660)
T COG5107 39 PTNILSYFQLIQY-LETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN--LDLWMLY 115 (660)
T ss_pred chhHHHHHHHHHH-HhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc--HhHHHHH
Confidence 4567889999999 9999999999999999987654 46999999888889999999999998876544 3344444
Q ss_pred HHHHhccCC------hHHHHHHHHHHHHh-CCCCC-hhHHHHHHHHHH---------hcCChHHHHHHHhcCCC
Q 005000 122 LKGFTRDIA------VEFGKELHCHVLKF-GFDSS-VFVQNALISTYC---------LCGEVDMARGIFDVSYK 178 (720)
Q Consensus 122 l~~~~~~~~------~~~a~~~~~~~~~~-g~~~~-~~~~~~li~~y~---------~~g~~~~A~~~f~~~~~ 178 (720)
|.-..+... -...-+.++.++.. +++|- ...|+..+...- .+.++|..++.+.++..
T Consensus 116 l~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~ 189 (660)
T COG5107 116 LEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQ 189 (660)
T ss_pred HHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHc
Confidence 443333221 11223445555442 34433 334555444332 12456677777776543
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.24 Score=42.31 Aligned_cols=49 Identities=6% Similarity=0.120 Sum_probs=29.5
Q ss_pred CCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHH
Q 005000 445 IIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVD 493 (720)
Q Consensus 445 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 493 (720)
..|+..+..+++.+++..|++..|.++.+...+.++++.+...|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4556666666666666666666666666666666665555555555543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.27 E-value=3.3 Score=47.95 Aligned_cols=26 Identities=4% Similarity=0.061 Sum_probs=16.8
Q ss_pred HHHHHHHHHcCC--CchHHHHHHHHhHh
Q 005000 83 WNTMIKGYSRID--SHKNGVLIYLDMLK 108 (720)
Q Consensus 83 ~n~li~~~~~~g--~~~~A~~l~~~m~~ 108 (720)
.-.+|..|++.+ ..++|+....+...
T Consensus 793 ~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 793 NLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 346777777776 55666666666553
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.68 Score=43.75 Aligned_cols=50 Identities=12% Similarity=0.048 Sum_probs=27.6
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHcCCCcc-HHHHHHHHHHHHhcCCHHHH
Q 005000 455 VLSACTHTGMVDEGREYFADMTIQHGIEPN-EAHYGCMVDLLGRAGHLNEA 504 (720)
Q Consensus 455 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA 504 (720)
+..-|.+.|.+..|..-++.+.+.+.-.+. ......|+..|.+.|..+.|
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 445566667777777777666655432221 23445566677777766644
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.88 Score=44.42 Aligned_cols=102 Identities=15% Similarity=0.075 Sum_probs=64.7
Q ss_pred ChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC---CHHHHHHHHHhC-CCCCC-HHHHHH
Q 005000 448 DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAG---HLNEALEVIKNM-PMKPN-SIVWGA 522 (720)
Q Consensus 448 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g---~~~eA~~~~~~~-~~~p~-~~~~~~ 522 (720)
|...|..|..+|...|+.+.|..-|....+-. .++++.+..+..++..+. ...++.++|+++ ..+|+ ..+..-
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 34566666666666677776666666654222 234445555555443322 345677777776 55664 444445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 005000 523 LLGACRVHRDAEMAEMAAKQILELDPDNE 551 (720)
Q Consensus 523 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 551 (720)
|...+...|++.+|...++.+++..|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 55668888999999999999988877653
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.62 Score=46.26 Aligned_cols=51 Identities=12% Similarity=0.096 Sum_probs=23.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcC--CC----CcchHHHHHhHhhhcCChhHHHHHHH
Q 005000 525 GACRVHRDAEMAEMAAKQILELD--PD----NEAVYVLLCNIYAACNRWDNFRELRQ 575 (720)
Q Consensus 525 ~~~~~~g~~~~a~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~a~~~~~ 575 (720)
-+++..|....|.+..+++.++. .. .......++++|...|+.|.|..-++
T Consensus 214 ValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe 270 (518)
T KOG1941|consen 214 VALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYE 270 (518)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHH
Confidence 44555555555555555554431 11 12223345555555555555544433
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.24 Score=42.30 Aligned_cols=50 Identities=20% Similarity=0.319 Sum_probs=34.9
Q ss_pred cCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHH
Q 005000 479 HGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM----PMKPNSIVWGALLGACR 528 (720)
Q Consensus 479 ~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~p~~~~~~~ll~~~~ 528 (720)
....|+..+..+++.+|+..|++..|+++++.. +++-+..+|..|+.=+.
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345577777778888888888888888777665 45445777777775443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.99 E-value=3.4 Score=39.19 Aligned_cols=218 Identities=19% Similarity=0.106 Sum_probs=140.9
Q ss_pred ChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHc-CCCCChhHhhHHhhhhhhcCCHHHHHHH
Q 005000 328 RFREALTLFREMQTSNIR-PDEFTIVSILTACANLGALELGEWVKTYIDKN-KVKNDIFVGNALIDMYCKCGDVEKAQRV 405 (720)
Q Consensus 328 ~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~-~~~~~~~~~~~li~~y~~~g~~~~A~~~ 405 (720)
....+...+......... .....+......+...+.+..+...+...... ........+..+...+...++...+.+.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 344444444444433211 12344455555555566666665555554432 2234445555666666777777788888
Q ss_pred HHhccCC--C-HHHHHHHHH-HHHHcCChHHHHHHHHHHHHCCCCC----ChHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 005000 406 FREMLRK--D-KFTWTAMIV-GLAINGHGDKSLDMFSQMLRASIIP----DEVTYVGVLSACTHTGMVDEGREYFADMTI 477 (720)
Q Consensus 406 ~~~~~~~--~-~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 477 (720)
+...... + ...+..... .+...|+.+.|...|.+... ..| ....+......+...++.+.+...+.....
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 118 LEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 7776542 2 122333333 68888999999999999855 333 233444444456778899999999988762
Q ss_pred HcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005000 478 QHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN-SIVWGALLGACRVHRDAEMAEMAAKQILELDPD 549 (720)
Q Consensus 478 ~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 549 (720)
.... ....+..+...+...+.+++|...+... ...|+ ...+..+...+...+..+.+...+.+.++..|.
T Consensus 196 --~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 --LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred --hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 2223 3677888888999999999999999887 44454 455666666666777899999999999999887
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.052 Score=34.03 Aligned_cols=33 Identities=36% Similarity=0.238 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 005000 518 IVWGALLGACRVHRDAEMAEMAAKQILELDPDN 550 (720)
Q Consensus 518 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 550 (720)
.+|..+...+...|++++|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 468888888999999999999999999998863
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.19 Score=48.20 Aligned_cols=82 Identities=18% Similarity=0.223 Sum_probs=48.1
Q ss_pred hcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CcchHHHHHhHhhhcCC
Q 005000 497 RAGHLNEALEVIKNM-------PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPD---NEAVYVLLCNIYAACNR 566 (720)
Q Consensus 497 ~~g~~~eA~~~~~~~-------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~ 566 (720)
+.|++.+|...|... ...|+..-| |..++...|+++.|...|..+.+-.|+ -|..+.-|+.+..+.|+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 344455555555443 133455555 556666666666666666666665444 34556666666777777
Q ss_pred hhHHHHHHHHHHhC
Q 005000 567 WDNFRELRQMILDR 580 (720)
Q Consensus 567 ~~~a~~~~~~m~~~ 580 (720)
-++|..+++.+.++
T Consensus 231 ~d~A~atl~qv~k~ 244 (262)
T COG1729 231 TDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777776666543
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.69 E-value=2.2 Score=44.53 Aligned_cols=142 Identities=12% Similarity=0.128 Sum_probs=95.4
Q ss_pred hHHHHHHHHHHHH-CCCCCChH-HHHHHHHHHHh---------cCChhhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHh
Q 005000 430 GDKSLDMFSQMLR-ASIIPDEV-TYVGVLSACTH---------TGMVDEGREYFADMTIQHGIEP-NEAHYGCMVDLLGR 497 (720)
Q Consensus 430 ~~~A~~l~~~m~~-~g~~p~~~-t~~~ll~a~~~---------~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~ 497 (720)
.+.|+.+|.+... ..+.|+.. .|..+..++.. .....+|.+.-+... .+.| |+.....+..++.-
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv---eld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS---DITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHh
Confidence 3567788888772 23566653 33333322211 223445666666554 2333 66777777888888
Q ss_pred cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHH--HHhHhhhcCChhHHHHH
Q 005000 498 AGHLNEALEVIKNM-PMKPN-SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVL--LCNIYAACNRWDNFREL 573 (720)
Q Consensus 498 ~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~--l~~~~~~~g~~~~a~~~ 573 (720)
.|+++.|..+|++. .+.|| ..+|......+.-.|+.++|.+.++++++++|....+-.. ..++|... ..++|.++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHH
Confidence 88999999999998 57775 5678888888889999999999999999999986544333 33345544 45667766
Q ss_pred HH
Q 005000 574 RQ 575 (720)
Q Consensus 574 ~~ 575 (720)
+-
T Consensus 430 ~~ 431 (458)
T PRK11906 430 YY 431 (458)
T ss_pred Hh
Confidence 53
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.2 Score=45.26 Aligned_cols=88 Identities=20% Similarity=0.200 Sum_probs=69.8
Q ss_pred HHHhcCCHHHHHHHHHhC-C-CCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCC
Q 005000 494 LLGRAGHLNEALEVIKNM-P-MKP-----NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNR 566 (720)
Q Consensus 494 ~~~~~g~~~eA~~~~~~~-~-~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 566 (720)
-+.+.|.+++|..-|... . .+| -.+.|..-..+..+.+..+.|+....+++++.|.+..+....+.+|.+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 355677777777776665 1 121 234555555678889999999999999999999998999999999999999
Q ss_pred hhHHHHHHHHHHhCC
Q 005000 567 WDNFRELRQMILDRG 581 (720)
Q Consensus 567 ~~~a~~~~~~m~~~~ 581 (720)
+++|.+-++++.+..
T Consensus 184 ~eealeDyKki~E~d 198 (271)
T KOG4234|consen 184 YEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999998754
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.095 Score=32.71 Aligned_cols=33 Identities=33% Similarity=0.267 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 005000 518 IVWGALLGACRVHRDAEMAEMAAKQILELDPDN 550 (720)
Q Consensus 518 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 550 (720)
..|..+...+...|++++|+..++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356777788888888888888888888888875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.51 Score=41.82 Aligned_cols=70 Identities=20% Similarity=0.260 Sum_probs=38.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHH----HHcCCCccHHH
Q 005000 417 WTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMT----IQHGIEPNEAH 487 (720)
Q Consensus 417 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~~~~~p~~~~ 487 (720)
...++..+...|++++|+.+.+++.... +-|...+..++.++...|+..+|.+.|+.+. ++.|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3445555666677777777777666642 2344566667777777777777776666543 24566666554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.32 E-value=1.1 Score=44.14 Aligned_cols=112 Identities=14% Similarity=0.096 Sum_probs=60.0
Q ss_pred cCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHH----HHHHHhcCChhhH
Q 005000 396 CGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGV----LSACTHTGMVDEG 468 (720)
Q Consensus 396 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l----l~a~~~~g~~~~a 468 (720)
.|+.-+|...++++.+ .|..+|+--=.++..+|+...-...+++.... ..||...|..+ .-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 4555555555555543 26666666666666677766666666666543 23443222211 1123456666666
Q ss_pred HHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 005000 469 REYFADMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM 511 (720)
Q Consensus 469 ~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~ 511 (720)
++.-++.. .+.| |.-.-.+....+.-.|+..|+.++..+-
T Consensus 195 Ek~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 195 EKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 66655443 2222 2333334555566666667776666654
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.36 Score=46.12 Aligned_cols=100 Identities=17% Similarity=0.241 Sum_probs=78.7
Q ss_pred HHHHHHhcc--CCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC-----------
Q 005000 402 AQRVFREML--RKDKFTWTAMIVGLAIN-----GHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTG----------- 463 (720)
Q Consensus 402 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----------- 463 (720)
.+..|.... ++|..+|-+++..+..+ +..+=....++.|.+.|+.-|..+|..||..+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 455666665 67888888888877654 455666677888999999999999999998765432
Q ss_pred -----ChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHH
Q 005000 464 -----MVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLN 502 (720)
Q Consensus 464 -----~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 502 (720)
+-+=++.++++|. .+|+.||.++-..++.++++.|..-
T Consensus 133 ~HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred hhCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhccccccH
Confidence 2234789999994 8999999999999999999998643
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=94.04 E-value=4.2 Score=45.63 Aligned_cols=71 Identities=13% Similarity=0.130 Sum_probs=42.0
Q ss_pred CcchHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCC-------hHHHHHHHHHHHHhCCCCChh
Q 005000 79 SVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIA-------VEFGKELHCHVLKFGFDSSVF 151 (720)
Q Consensus 79 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~-------~~~a~~~~~~~~~~g~~~~~~ 151 (720)
+.-.| ++|=-+.|.|++++|.++..+... ........|...++.+....+ -+....-+.+.++...+.|++
T Consensus 111 ~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 111 GDPIW-ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp TEEHH-HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred CCccH-HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 33456 456667899999999998866553 345566778888888876432 234455555555544333554
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.91 E-value=2.7 Score=36.82 Aligned_cols=120 Identities=16% Similarity=0.207 Sum_probs=58.6
Q ss_pred HhhhhhhcCCHHHHHHHHHhccCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCh
Q 005000 389 LIDMYCKCGDVEKAQRVFREMLRK---DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMV 465 (720)
Q Consensus 389 li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 465 (720)
++..+.+.+.+......++.+... +....|.++..|++.+ ..+.++.++. .++......++..|.+.+.+
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCcH
Confidence 334444444444444444444222 2334444555554432 2233333332 12333344466667777777
Q ss_pred hhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc-CCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005000 466 DEGREYFADMTIQHGIEPNEAHYGCMVDLLGRA-GHLNEALEVIKNMPMKPNSIVWGALLGACR 528 (720)
Q Consensus 466 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~ 528 (720)
+++..++..+. . +...++.+... ++.+.|.+++.+- .++..|..++..|.
T Consensus 86 ~~~~~l~~k~~----~------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~l 136 (140)
T smart00299 86 EEAVELYKKDG----N------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHhhc----C------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 77777665542 1 22233333333 6677777777663 25566766666554
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.87 E-value=1.6 Score=42.48 Aligned_cols=120 Identities=13% Similarity=0.115 Sum_probs=77.3
Q ss_pred HHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCHH
Q 005000 458 ACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGA---LLGACRVHRDAE 534 (720)
Q Consensus 458 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~---ll~~~~~~g~~~ 534 (720)
.....|+..++..+|+...... .-+...--.|+..|...|+.++|..++..++.+-...-|.. -+....+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 4456677777777777765221 22345555677888888888888888888864433333322 222222222222
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 535 MAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 535 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
+. ..+++-+..+|+|...-..|+..|...|+.++|.+.+-.+.++
T Consensus 221 ~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 21 2345556678999999999999999999999999876666554
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.81 E-value=9.4 Score=39.49 Aligned_cols=133 Identities=10% Similarity=0.100 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHH-HHHH
Q 005000 414 KFTWTAMIVGLAINGHGDKSLDMFSQMLRAS-IIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAH-YGCM 491 (720)
Q Consensus 414 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-~~~l 491 (720)
...|-..+..-.+..-.+.|..+|-+..+.| +.++...+++++.-+ ..|+...|..+|+.=... -||... -+-.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~---f~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLK---FPDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHh---CCCchHHHHHH
Confidence 3456677777777777888888888888888 566666777776544 457888888888764422 234333 3455
Q ss_pred HHHHHhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 005000 492 VDLLGRAGHLNEALEVIKNM--PMKPN--SIVWGALLGACRVHRDAEMAEMAAKQILELDPDN 550 (720)
Q Consensus 492 i~~~~~~g~~~eA~~~~~~~--~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 550 (720)
++-+.+-++-+.|..+|+.. .+..+ ...|..++.--..-|+...+..+-+++.+.-|+.
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 66777888888888888855 12222 5678888888888888888888888888888774
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.49 E-value=8 Score=37.87 Aligned_cols=175 Identities=14% Similarity=0.132 Sum_probs=111.7
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcC
Q 005000 401 KAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHG 480 (720)
Q Consensus 401 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 480 (720)
...+.++....+....--.........|+..+|..+|......... +...-..+..++...|+++.|..++..+..+.
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~- 198 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQA- 198 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccc-
Confidence 3444445554442222223344567788899999999888875322 33555667888889999999999998764211
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCcchHHHH
Q 005000 481 IEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELD--PDNEAVYVLL 557 (720)
Q Consensus 481 ~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l 557 (720)
-.........-+..+.++....+..++-.+....| |...-..+...+...|+.+.|.+.+-.+++.+ -+|...-..|
T Consensus 199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~l 278 (304)
T COG3118 199 QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTL 278 (304)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence 11111122344667777777777677766665566 56666777788888999999888777777654 3466777778
Q ss_pred HhHhhhcCChhHH-HHHHHHH
Q 005000 558 CNIYAACNRWDNF-RELRQMI 577 (720)
Q Consensus 558 ~~~~~~~g~~~~a-~~~~~~m 577 (720)
..++.-.|.-+.+ .+.+++|
T Consensus 279 le~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 279 LELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred HHHHHhcCCCCHHHHHHHHHH
Confidence 8888777754443 3344443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.43 E-value=4.9 Score=35.13 Aligned_cols=86 Identities=15% Similarity=0.114 Sum_probs=45.2
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCCh
Q 005000 118 FPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQF 197 (720)
Q Consensus 118 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~ 197 (720)
...++..+...+........++.+++.+ ..+....|.++..|++.. .....+.++. ..+......+++.+.+.+.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcH
Confidence 3455555555556666666666666655 245566677777776543 2333333331 12333334455555555555
Q ss_pred hHHHHHHHHH
Q 005000 198 DETRKLFGEM 207 (720)
Q Consensus 198 ~~A~~l~~~m 207 (720)
+++.-++.++
T Consensus 86 ~~~~~l~~k~ 95 (140)
T smart00299 86 EEAVELYKKD 95 (140)
T ss_pred HHHHHHHHhh
Confidence 5555555443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=93.27 E-value=2.3 Score=37.77 Aligned_cols=84 Identities=8% Similarity=-0.022 Sum_probs=36.3
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 005000 425 AINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEA 504 (720)
Q Consensus 425 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA 504 (720)
-+.|++++|..+|+-+...+. -|..-+.+|..+|-..+++++|...|..... .+ .-|+..+-.+...|...|+.++|
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~-l~-~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFT-LL-KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cc-cCCCCccchHHHHHHHhCCHHHH
Confidence 345555555555555444221 1222334444444445555555555544321 11 11122222244445555555555
Q ss_pred HHHHHhC
Q 005000 505 LEVIKNM 511 (720)
Q Consensus 505 ~~~~~~~ 511 (720)
+..|+..
T Consensus 125 ~~~f~~a 131 (165)
T PRK15331 125 RQCFELV 131 (165)
T ss_pred HHHHHHH
Confidence 5555444
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.21 E-value=17 Score=40.73 Aligned_cols=172 Identities=10% Similarity=0.019 Sum_probs=81.8
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHH----HHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCC
Q 005000 155 ALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMF----SGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLK 230 (720)
Q Consensus 155 ~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li----~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~ 230 (720)
.-+++..+...++.|..+-..-.. |...-..+. .-+.+.|++++|..-|-+-... +.|. .++.-+....
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq 411 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQ 411 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHH
Confidence 345555555555555555443221 111111112 2234556666666665554322 2221 2333444444
Q ss_pred CchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCch--hHHHHHHHHHhcCCHHHHHHHHhhC
Q 005000 231 DLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVI--SWTAIVTGYINRGQVDMARQYFDQM 308 (720)
Q Consensus 231 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~f~~~ 308 (720)
....-...++.+.+.|+. +...-+.|+.+|.+.++.++-.+..+.... ... -....+..+.+.+-.++|..+-..-
T Consensus 412 ~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~-g~~~fd~e~al~Ilr~snyl~~a~~LA~k~ 489 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDK-GEWFFDVETALEILRKSNYLDEAELLATKF 489 (933)
T ss_pred HHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCC-cceeeeHHHHHHHHHHhChHHHHHHHHHHh
Confidence 444455556666666654 334445667777777777666666655442 111 1233444444555555554443332
Q ss_pred CCCCccchHHHHHHHHhcCChhHHHHHHHHH
Q 005000 309 PERDYVLWTAMIDGYLRVNRFREALTLFREM 339 (720)
Q Consensus 309 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 339 (720)
.. +.. .+--.+-..+++++|++.+..|
T Consensus 490 ~~-he~---vl~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 490 KK-HEW---VLDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred cc-CHH---HHHHHHHHhcCHHHHHHHHhcC
Confidence 22 111 1222233456677777776655
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.99 Score=43.50 Aligned_cols=61 Identities=15% Similarity=0.153 Sum_probs=31.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 005000 491 MVDLLGRAGHLNEALEVIKNM----PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551 (720)
Q Consensus 491 li~~~~~~g~~~eA~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 551 (720)
|...+...|++++|...|..+ |..| -+..+--|.......|+.++|...++++.+.-|+.+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 445555555555555554443 2222 223444444555555666666666666666666543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=93.04 E-value=11 Score=38.97 Aligned_cols=30 Identities=13% Similarity=0.042 Sum_probs=21.0
Q ss_pred CChHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 005000 447 PDEVTYVGVLSACTHTGMVDEGREYFADMT 476 (720)
Q Consensus 447 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 476 (720)
.|...+.+++.++.-.|++++|.+..+.|.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~ 332 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAF 332 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 344556667777777777777777777775
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.84 E-value=4.1 Score=43.38 Aligned_cols=133 Identities=11% Similarity=0.148 Sum_probs=65.5
Q ss_pred HHHhCCChhHHHHHHH-HHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHH
Q 005000 190 GYKRVKQFDETRKLFG-EMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMG 268 (720)
Q Consensus 190 ~~~~~g~~~~A~~l~~-~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 268 (720)
...-.|+++++.++.+ .-.-..++ ..-...+++.+-+.|..+.|.++-. |+ ..-.+...++|+++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~---------D~---~~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVT---------DP---DHRFELALQLGNLD 335 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HH
T ss_pred HHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcC---------Ch---HHHhHHHHhcCCHH
Confidence 3445666766665554 11111111 2335556666666666666665532 22 12344556677777
Q ss_pred HHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 005000 269 FALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN 343 (720)
Q Consensus 269 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 343 (720)
.|.++-++.. +...|..|.....+.|+++-|++.|.+..+ |..|.-.|.-.|+.+.-.++.+.....|
T Consensus 336 ~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 336 IALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 7776665544 344566666666666666666666665432 4555555666666655555555554444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.80 E-value=3.8 Score=43.03 Aligned_cols=59 Identities=15% Similarity=0.061 Sum_probs=41.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 521 GALLGACRVHRDAEMAEMAAKQILELDPD--NEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 521 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
..|...+++.|+.++|++.++.+++..|. +-.+...|+..+...+++.++..++.+-.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 45666677777777777777777776654 345666777777777777777777776543
|
The molecular function of this protein is uncertain. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=92.75 E-value=3.1 Score=44.99 Aligned_cols=20 Identities=15% Similarity=-0.112 Sum_probs=9.9
Q ss_pred HHHHHhcCCHHHHHHHHHhC
Q 005000 492 VDLLGRAGHLNEALEVIKNM 511 (720)
Q Consensus 492 i~~~~~~g~~~eA~~~~~~~ 511 (720)
.-.+.-.++|++|.+.|..+
T Consensus 312 ~w~~~~~~~w~~A~~~f~~L 331 (468)
T PF10300_consen 312 AWCHMFQHDWEEAAEYFLRL 331 (468)
T ss_pred HHHHHHHchHHHHHHHHHHH
Confidence 33344455555555555554
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.69 E-value=3.8 Score=43.65 Aligned_cols=157 Identities=15% Similarity=0.095 Sum_probs=97.1
Q ss_pred hcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHh
Q 005000 227 AKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFD 306 (720)
Q Consensus 227 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~ 306 (720)
.-.++++.+.++.+.-.-.. .-+....+.++..+-+.|..+.|+.+-.. . ..-.....+.|+++.|.++-+
T Consensus 272 v~~~d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~D-----~---~~rFeLAl~lg~L~~A~~~a~ 342 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVTD-----P---DHRFELALQLGNLDIALEIAK 342 (443)
T ss_dssp HHTT-HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHHHHHHCC
T ss_pred HHcCChhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcCC-----h---HHHhHHHHhcCCHHHHHHHHH
Confidence 34577777655553111010 11244588899999999999999988553 1 334556678999999998877
Q ss_pred hCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHh
Q 005000 307 QMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVG 386 (720)
Q Consensus 307 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~ 386 (720)
+.. +...|..|.....++|+++-|.+.|.+... +..++-.+...|+.+.-..+.......|- +
T Consensus 343 ~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~ 405 (443)
T PF04053_consen 343 ELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------I 405 (443)
T ss_dssp CCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------H
T ss_pred hcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------H
Confidence 665 556899999999999999999998876542 34455555666777766666666666552 3
Q ss_pred hHHhhhhhhcCCHHHHHHHHHhc
Q 005000 387 NALIDMYCKCGDVEKAQRVFREM 409 (720)
Q Consensus 387 ~~li~~y~~~g~~~~A~~~~~~~ 409 (720)
|....++.-.|++++..+++.+.
T Consensus 406 n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 406 NIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHc
Confidence 44445555567777776666544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.68 E-value=9.9 Score=36.53 Aligned_cols=168 Identities=17% Similarity=0.155 Sum_probs=93.2
Q ss_pred hhhcCCHHHHHHHHHhccCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCh--HHHHHHHHHHHhc-
Q 005000 393 YCKCGDVEKAQRVFREMLRK------DKFTWTAMIVGLAINGHGDKSLDMFSQMLRAS-IIPDE--VTYVGVLSACTHT- 462 (720)
Q Consensus 393 y~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~--~t~~~ll~a~~~~- 462 (720)
-.+.|++++|.+.|+.+... ...+--.++.++-+.+++++|+..+++....- -.||. ..|...++-+...
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 34568888888888888543 22334445567777888888888888877642 23333 2333333322221
Q ss_pred ---CChhhHHHHH---HHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHH
Q 005000 463 ---GMVDEGREYF---ADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVW--GALLGACRVHRDAE 534 (720)
Q Consensus 463 ---g~~~~a~~~~---~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~--~~ll~~~~~~g~~~ 534 (720)
.+...+.+.| +.++.++ ||. .-..+|..-+.... |.... .++..-|.+.|.+.
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~ry---PnS-------------~Ya~dA~~~i~~~~---d~LA~~Em~IaryY~kr~~~~ 184 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQRY---PNS-------------RYAPDAKARIVKLN---DALAGHEMAIARYYLKRGAYV 184 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHHC---CCC-------------cchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhcChH
Confidence 2222233333 2222221 221 11112222211110 11111 23456688888888
Q ss_pred HHHHHHHHHHhcCCCCc---chHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 535 MAEMAAKQILELDPDNE---AVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 535 ~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
.|..-++++++.-|+.+ ..+..+..+|...|..++|.+.-+-+..
T Consensus 185 AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 185 AAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 88888888888766533 4556677788888988888887665543
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.55 E-value=0.76 Score=44.04 Aligned_cols=98 Identities=14% Similarity=0.139 Sum_probs=75.4
Q ss_pred HHHHHhcCC--CCCeeeHHHHHHHHHhC-----CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCC-----------
Q 005000 169 ARGIFDVSY--KDDVVTWNAMFSGYKRV-----KQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLK----------- 230 (720)
Q Consensus 169 A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~----------- 230 (720)
.++.|.... ++|-.+|-+++..+... +..+=....++.|.+-|+.-|..+|..||+.+-+-.
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 355566555 56777787777776543 455666667788999999999999999998776533
Q ss_pred -----CchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC
Q 005000 231 -----DLDVGKRAHRYVKECKIVPNLILENALTDMYAACGE 266 (720)
Q Consensus 231 -----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 266 (720)
+-+-+..++++|...|+.||-.+-..|++++++.+-
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 234588899999999999999999999999988776
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=92.43 E-value=13 Score=37.14 Aligned_cols=48 Identities=6% Similarity=0.063 Sum_probs=21.6
Q ss_pred CCccchHHHHHHHHhcCCh----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 005000 311 RDYVLWTAMIDGYLRVNRF----REALTLFREMQTSNIRPDEFTIVSILTACAN 360 (720)
Q Consensus 311 ~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 360 (720)
.|...-...+.++.+.|+. ++++..+..+... .|+...-...+.++..
T Consensus 66 ~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~ 117 (280)
T PRK09687 66 KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGH 117 (280)
T ss_pred CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhc
Confidence 3444444444555555542 3455555554322 3444444444444443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=92.26 E-value=6.5 Score=42.53 Aligned_cols=115 Identities=20% Similarity=0.164 Sum_probs=82.8
Q ss_pred cCChhhHHHHHHHHHHHcCCCccHHHHHHH-HHHHHhcCCHHHHHHHHHhCC-CC-----CCHHHHHHHHHHHHhcCCHH
Q 005000 462 TGMVDEGREYFADMTIQHGIEPNEAHYGCM-VDLLGRAGHLNEALEVIKNMP-MK-----PNSIVWGALLGACRVHRDAE 534 (720)
Q Consensus 462 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l-i~~~~~~g~~~eA~~~~~~~~-~~-----p~~~~~~~ll~~~~~~g~~~ 534 (720)
....+.+.++++.+... -|+...|... ...+...|++++|.+.|++.- .+ -....+--+...+....+++
T Consensus 246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 45678899999988743 4666655433 456778899999999999752 11 12334455667788899999
Q ss_pred HHHHHHHHHHhcCCCCcchHH-HHHhHhhhcCCh-------hHHHHHHHHHHh
Q 005000 535 MAEMAAKQILELDPDNEAVYV-LLCNIYAACNRW-------DNFRELRQMILD 579 (720)
Q Consensus 535 ~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~-------~~a~~~~~~m~~ 579 (720)
+|...+.++.+...-+...|. ..+-+|...|+. ++|.++++++..
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 999999999997665545554 455566788988 888888877754
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.22 E-value=22 Score=39.55 Aligned_cols=150 Identities=16% Similarity=0.172 Sum_probs=87.4
Q ss_pred HhccCChHHHHHHHHHHHHhCCCC---ChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCChhHHH
Q 005000 125 FTRDIAVEFGKELHCHVLKFGFDS---SVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETR 201 (720)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 201 (720)
+.+.+.+++|..+-.... |..+ ...++..+|+.|.-.|++++|..+.-.|...+..-|--.+.-+...++.....
T Consensus 366 ll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia 443 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIA 443 (846)
T ss_pred HHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhh
Confidence 334445555555443322 2333 34577888888888899999988888888778888887777777777665443
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcC------------C-------CCChHHHHHHHHHHH
Q 005000 202 KLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECK------------I-------VPNLILENALTDMYA 262 (720)
Q Consensus 202 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g------------~-------~~~~~~~~~li~~y~ 262 (720)
.++- ......+...|..+|-.+.. .+ ...+++.+.+.. . .-+..+...|+..|.
T Consensus 444 ~~lP---t~~~rL~p~vYemvLve~L~-~~---~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl 516 (846)
T KOG2066|consen 444 PYLP---TGPPRLKPLVYEMVLVEFLA-SD---VKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYL 516 (846)
T ss_pred ccCC---CCCcccCchHHHHHHHHHHH-HH---HHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHH
Confidence 3321 11112233445555555544 11 111111111110 0 112234455889999
Q ss_pred hcCCHHHHHHHHhhcCCCCch
Q 005000 263 ACGEMGFALEIFGNIKNKDVI 283 (720)
Q Consensus 263 ~~g~~~~A~~~~~~~~~~~~~ 283 (720)
..+++++|..++-...++++.
T Consensus 517 ~d~~Y~~Al~~ylklk~~~vf 537 (846)
T KOG2066|consen 517 YDNKYEKALPIYLKLQDKDVF 537 (846)
T ss_pred HccChHHHHHHHHhccChHHH
Confidence 999999999999888876553
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.05 E-value=5.4 Score=34.63 Aligned_cols=115 Identities=14% Similarity=0.129 Sum_probs=52.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCC--ChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 005000 421 IVGLAINGHGDKSLDMFSQMLRASIIP--DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRA 498 (720)
Q Consensus 421 i~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 498 (720)
.....+.|++++|.+.|+.+...-..+ ....-..++.++...|++++|...+++.++-+.-.|+ ..|.....++..-
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHH
Confidence 334445566666666666655531111 1123444555556666666666666655533333332 2232233332222
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 005000 499 GHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551 (720)
Q Consensus 499 g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 551 (720)
...+. .+..+ ...=+..+....|...++++++.-|++.
T Consensus 96 ~~~~~---~~~~~------------~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 96 EQDEG---SLQSF------------FRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHhhh---HHhhh------------cccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 11111 11111 0011112235577888888888888753
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.96 E-value=11 Score=35.65 Aligned_cols=45 Identities=18% Similarity=0.365 Sum_probs=23.3
Q ss_pred HhhHHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005000 385 VGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQML 441 (720)
Q Consensus 385 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 441 (720)
.++--..+|..+|.++.|-..+++.- -...+-++++|+++|++..
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAa------------k~lenv~Pd~AlqlYqral 137 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAA------------KALENVKPDDALQLYQRAL 137 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHH------------HHhhcCCHHHHHHHHHHHH
Confidence 34555566666666666555554431 1123445556666665543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.95 E-value=12 Score=35.92 Aligned_cols=141 Identities=13% Similarity=0.121 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--CChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHH
Q 005000 416 TWTAMIVGLAINGHGDKSLDMFSQMLRASII--PDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVD 493 (720)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 493 (720)
.|-.-+..-.+.|++++|.+.|+.+.....- -...+...++-++.+.+++++|....++....++-.||.. |...+.
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~Ylk 114 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLK 114 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHH
Confidence 3444445566788888888888888864211 1124666677778888888888888888877777667654 333333
Q ss_pred HHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------------cchHH
Q 005000 494 LLGRAGHLNEALEVIKNMP-MKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDN-----------------EAVYV 555 (720)
Q Consensus 494 ~~~~~g~~~eA~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------------~~~~~ 555 (720)
++. .|.... ...|. .-...|...++.++..-|++ ...-.
T Consensus 115 gLs----------~~~~i~~~~rDq-------------~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em 171 (254)
T COG4105 115 GLS----------YFFQIDDVTRDQ-------------SAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEM 171 (254)
T ss_pred HHH----------HhccCCccccCH-------------HHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 333 111111 00011 11223344444444444443 12334
Q ss_pred HHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 556 LLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 556 ~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
.+++.|.+.|.|..|..-++.|.+.
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc
Confidence 6788899999999999999888876
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.86 E-value=1.4 Score=37.14 Aligned_cols=88 Identities=15% Similarity=0.124 Sum_probs=44.5
Q ss_pred HHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CC-CH---HHHHHHHHHHHhcCC
Q 005000 459 CTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PM-KP-NS---IVWGALLGACRVHRD 532 (720)
Q Consensus 459 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~-~p-~~---~~~~~ll~~~~~~g~ 532 (720)
.+..|+++.|++.|.+... -.+-+...||.-..+|.-+|+.++|++-+++. .+ .| .. ..|-.-...|+..|+
T Consensus 53 laE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4455555555555555431 11224455555556666566666665555544 11 11 11 122223344666677
Q ss_pred HHHHHHHHHHHHhcCC
Q 005000 533 AEMAEMAAKQILELDP 548 (720)
Q Consensus 533 ~~~a~~~~~~~~~~~p 548 (720)
.+.|..-|+.+-++..
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 7777666666665543
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=91.76 E-value=0.3 Score=47.87 Aligned_cols=113 Identities=13% Similarity=0.073 Sum_probs=80.8
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcC
Q 005000 455 VLSACTHTGMVDEGREYFADMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMK-PNSIVWGALLGACRVHR 531 (720)
Q Consensus 455 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~-p~~~~~~~ll~~~~~~g 531 (720)
-.+-|.++|.+++|+..|.... .+.| ++.++..-..+|.+..++..|+.-.+.. .+. .-...|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 3567889999999999998654 5567 8888888899999999998887766554 111 11234555555666778
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHH
Q 005000 532 DAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELR 574 (720)
Q Consensus 532 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 574 (720)
+.++|.+-++.+++++|++.. |-..|++.....++.-+.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~~I~~ 218 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIE----LKKSLARINSLRERKIAT 218 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhhhHHh
Confidence 999999999999999999643 444555555555554443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=91.67 E-value=7.4 Score=39.02 Aligned_cols=129 Identities=17% Similarity=0.077 Sum_probs=82.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCC-C----hHHHHHHHHHHHhcCChhhHHHHHHHHH---HHcCCCccHHHHH
Q 005000 418 TAMIVGLAINGHGDKSLDMFSQMLRASIIP-D----EVTYVGVLSACTHTGMVDEGREYFADMT---IQHGIEPNEAHYG 489 (720)
Q Consensus 418 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~---~~~~~~p~~~~~~ 489 (720)
.+|..++.-.+.++++++.|+...+-.-.. | -..+.+|.+.+....++++|.-+..... ..+++..-..-|.
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 346667777778888888888766521111 1 2467778888888888888876665432 2334433333333
Q ss_pred H-----HHHHHHhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005000 490 C-----MVDLLGRAGHLNEALEVIKNM-------PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILEL 546 (720)
Q Consensus 490 ~-----li~~~~~~g~~~eA~~~~~~~-------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (720)
+ |.-+|...|++-+|.+.-++. +.+| -......+...|+..|+.|.|..-|+.+...
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 3 334566777776666665554 3333 2344567778899999999999888887764
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.49 E-value=9.3 Score=35.53 Aligned_cols=163 Identities=14% Similarity=0.125 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHH
Q 005000 414 KFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVD 493 (720)
Q Consensus 414 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 493 (720)
+..||-+.--+...|+++.|.+.|+...+....-+ .+...-.-++.-.|+++-|.+-|...-....-.|-...|-.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~-Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLY--- 174 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN-YAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLY--- 174 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch-HHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHH---
Confidence 55777777777788888888888888777532222 22222233455667787777666554322222222223322
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------cchHHHHHhHhhhcCC
Q 005000 494 LLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDN-------EAVYVLLCNIYAACNR 566 (720)
Q Consensus 494 ~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~ 566 (720)
.-.+.-++.+|..-+.+--.+.|..-|+..+-.+.-..--+ +.+++++.+-..++ ..+|.-|+.-|...|.
T Consensus 175 l~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~ 252 (297)
T COG4785 175 LNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGD 252 (297)
T ss_pred HHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcccc
Confidence 22334456666654443322345566665554433211111 22333333322222 3588899999999999
Q ss_pred hhHHHHHHHHHHhCCC
Q 005000 567 WDNFRELRQMILDRGI 582 (720)
Q Consensus 567 ~~~a~~~~~~m~~~~~ 582 (720)
.++|..+++......+
T Consensus 253 ~~~A~~LfKLaiannV 268 (297)
T COG4785 253 LDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHHHHhH
Confidence 9999999998876543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=91.40 E-value=22 Score=37.69 Aligned_cols=98 Identities=16% Similarity=0.178 Sum_probs=60.6
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCC--HHHHHHHHHHHHh
Q 005000 454 GVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP-M-KPN--SIVWGALLGACRV 529 (720)
Q Consensus 454 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~-~-~p~--~~~~~~ll~~~~~ 529 (720)
.+..++-+.|+.++|++.+.+|.+......+..+...|+..|...+.+.++..++.+-. + -|. ...|++.+--.+.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRa 343 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARA 343 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHh
Confidence 35555567788888888887776444332334455667778888888888888877763 1 133 3445555444443
Q ss_pred cCC---------------HHHHHHHHHHHHhcCCCCc
Q 005000 530 HRD---------------AEMAEMAAKQILELDPDNE 551 (720)
Q Consensus 530 ~g~---------------~~~a~~~~~~~~~~~p~~~ 551 (720)
.++ -..|.++..++.+.+|.-+
T Consensus 344 v~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 344 VGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred hccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 333 1235688888888887643
|
The molecular function of this protein is uncertain. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=91.26 E-value=0.35 Score=30.09 Aligned_cols=31 Identities=29% Similarity=0.199 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005000 519 VWGALLGACRVHRDAEMAEMAAKQILELDPD 549 (720)
Q Consensus 519 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 549 (720)
+|..+...+...|++++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5666777788888888888888888888774
|
... |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.16 E-value=0.35 Score=30.77 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=19.8
Q ss_pred hHHHHHhHhhhcCChhHHHHHHHHHH
Q 005000 553 VYVLLCNIYAACNRWDNFRELRQMIL 578 (720)
Q Consensus 553 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 578 (720)
++..|+++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36678888888888888888888744
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.12 E-value=14 Score=35.07 Aligned_cols=199 Identities=14% Similarity=0.081 Sum_probs=112.8
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCCC--HHHHHHHHHHHHHcC
Q 005000 351 IVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKD--KFTWTAMIVGLAING 428 (720)
Q Consensus 351 ~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~g 428 (720)
|.....++....+++++..-+..+.+. .+.+...|.+ ...++.|.-+.+++.+-+ +..|+--...|..+|
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~klsEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG 105 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence 333445566677777777655554431 1222222221 233455555555554433 235666678899999
Q ss_pred ChHHHHHHHHHHHH--CCCCCChH--HHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 005000 429 HGDKSLDMFSQMLR--ASIIPDEV--TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEA 504 (720)
Q Consensus 429 ~~~~A~~l~~~m~~--~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA 504 (720)
.++.|-..+++.-+ .++.|+.. .|.--+......++...| .+.|......|.|..+++||
T Consensus 106 spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma----------------~el~gk~sr~lVrl~kf~Ea 169 (308)
T KOG1585|consen 106 SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMA----------------FELYGKCSRVLVRLEKFTEA 169 (308)
T ss_pred CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHH----------------HHHHHHhhhHhhhhHHhhHH
Confidence 98887777776443 23555542 222222222222222222 23455566678888888888
Q ss_pred HHHHHhCC-----C--CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCcchHHHHHhHhhhcCChhHHHH
Q 005000 505 LEVIKNMP-----M--KPNS-IVWGALLGACRVHRDAEMAEMAAKQILEL----DPDNEAVYVLLCNIYAACNRWDNFRE 572 (720)
Q Consensus 505 ~~~~~~~~-----~--~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~~l~~~~~~~g~~~~a~~ 572 (720)
-..|.+-. . -|+. ..+-+.+-.+....|+..|+..++.--++ .|++..+...|...| ..|+.|++..
T Consensus 170 a~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~k 248 (308)
T KOG1585|consen 170 ATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKK 248 (308)
T ss_pred HHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHH
Confidence 77776642 1 1222 23445555566677899999998886654 466777777777776 4577777766
Q ss_pred HH
Q 005000 573 LR 574 (720)
Q Consensus 573 ~~ 574 (720)
+.
T Consensus 249 vl 250 (308)
T KOG1585|consen 249 VL 250 (308)
T ss_pred HH
Confidence 54
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.11 E-value=0.45 Score=31.89 Aligned_cols=37 Identities=22% Similarity=0.472 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 005000 487 HYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGAL 523 (720)
Q Consensus 487 ~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l 523 (720)
.+..+...|.+.|++++|++++++. ...| |...|..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 4455666666666666666666665 3344 44455443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.09 E-value=2.2 Score=42.11 Aligned_cols=159 Identities=8% Similarity=-0.018 Sum_probs=118.8
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHH----HHHHHHHhcCCH
Q 005000 426 INGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYG----CMVDLLGRAGHL 501 (720)
Q Consensus 426 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~----~li~~~~~~g~~ 501 (720)
-+|+..+|-..++++++. .+-|...+.-.=.+|...|+.+.-...++++..+ ..|+...|. .+.-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 468888999999999886 4556677777788999999999999998887632 245554443 344556789999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CcchHHHHHhHhhhcCChhHHHHHHH
Q 005000 502 NEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPD----NEAVYVLLCNIYAACNRWDNFRELRQ 575 (720)
Q Consensus 502 ~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~ 575 (720)
++|++.-++. .+.| |.-.-.++.......|+..++.+..++--..-.+ -...|...+-.|...+.++.|.++++
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999887 5555 5666677778888999999999887765432211 23466777888888999999999998
Q ss_pred HHHhCCCccCCc
Q 005000 576 MILDRGIKKTPG 587 (720)
Q Consensus 576 ~m~~~~~~~~~~ 587 (720)
.-.-+.+.++.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 876666665554
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.90 E-value=0.39 Score=30.54 Aligned_cols=28 Identities=29% Similarity=0.113 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005000 519 VWGALLGACRVHRDAEMAEMAAKQILEL 546 (720)
Q Consensus 519 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (720)
+|..|...|...|++++|+.++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888888888888888888886654
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=90.89 E-value=9.2 Score=32.51 Aligned_cols=59 Identities=14% Similarity=0.142 Sum_probs=32.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 005000 417 WTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMT 476 (720)
Q Consensus 417 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 476 (720)
....+..+...|+-+.-.+++.++... -+|+......+.+||.+.|+..++.+++.++.
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 344455566666666666666666542 35566666666667777777777777666665
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.83 E-value=57 Score=41.53 Aligned_cols=63 Identities=14% Similarity=0.032 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 517 SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 517 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
..+|......++..|.++.|..+.-++.+..+ +..+.-.+......|+-..|..+++.-.+..
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 56899999999999999999999888888775 4789999999999999999999998887654
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.77 E-value=32 Score=38.47 Aligned_cols=100 Identities=13% Similarity=-0.005 Sum_probs=62.4
Q ss_pred HHHHHhcCChHHHHHHHhcCCCC-----CeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCC
Q 005000 157 ISTYCLCGEVDMARGIFDVSYKD-----DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKD 231 (720)
Q Consensus 157 i~~y~~~g~~~~A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 231 (720)
|+-+.+.+.+++|..+-+..... -...|-..|..+.-.|++++|-.+.-.|... +..-|..-+..++..++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 44556678888998887654431 2236888899999999999999888888754 44455555555555554
Q ss_pred chHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Q 005000 232 LDVGKRAHRYVKECKIVPNLILENALTDMYAA 263 (720)
Q Consensus 232 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 263 (720)
.... ...+.......+..+|..++..+..
T Consensus 439 l~~I---a~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 439 LTDI---APYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cchh---hccCCCCCcccCchHHHHHHHHHHH
Confidence 4322 2222222222456677777766665
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=90.71 E-value=12 Score=33.62 Aligned_cols=37 Identities=3% Similarity=0.022 Sum_probs=25.3
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHH
Q 005000 201 RKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKR 237 (720)
Q Consensus 201 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 237 (720)
+++++.+...+++|+...+..+++.+.+.|.+....+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q 50 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ 50 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3455666667777777788888888877777654333
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.76 E-value=40 Score=38.06 Aligned_cols=111 Identities=12% Similarity=0.102 Sum_probs=70.4
Q ss_pred HHHcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 005000 89 GYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDM 168 (720)
Q Consensus 89 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 168 (720)
-+.+.|++++|...|-+-... +.| +.+++-+-....+..-...++.+.+.|+. +..--+.|++.|.+.++.+.
T Consensus 377 ~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~k 449 (933)
T KOG2114|consen 377 YLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEK 449 (933)
T ss_pred HHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHH
Confidence 345678888888887765432 222 34556665566666666777778888864 33444678899999998888
Q ss_pred HHHHHhcCCCCCe-eeHHHHHHHHHhCCChhHHHHHHHH
Q 005000 169 ARGIFDVSYKDDV-VTWNAMFSGYKRVKQFDETRKLFGE 206 (720)
Q Consensus 169 A~~~f~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~ 206 (720)
-.+..+....... .-....+..+.+.+-.++|..+-..
T Consensus 450 L~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 450 LTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 8887776652211 1244556666666666666555443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.35 E-value=36 Score=36.92 Aligned_cols=120 Identities=11% Similarity=-0.026 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCC-CHHHHHHHHHH
Q 005000 450 VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP--MKP-NSIVWGALLGA 526 (720)
Q Consensus 450 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~--~~p-~~~~~~~ll~~ 526 (720)
.+|..-+.--...|+.+...-+|++... ....-.+.|--.+.-....|+.+-|..++.... ..| .+.+-..-...
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli--~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLI--PCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHh--HHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4666666666677777777777766541 222234455555555556677777766665541 112 22222222233
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHH
Q 005000 527 CRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFR 571 (720)
Q Consensus 527 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 571 (720)
+-..|++..|..+++++.+--|.....-..-+++..+.|+.+.+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 556678888888888877655765555555566667777777777
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=89.24 E-value=25 Score=35.03 Aligned_cols=19 Identities=11% Similarity=-0.135 Sum_probs=12.5
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 005000 526 ACRVHRDAEMAEMAAKQIL 544 (720)
Q Consensus 526 ~~~~~g~~~~a~~~~~~~~ 544 (720)
.+.+.++++.|...++-.+
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 4556677777777776543
|
It is also involved in sporulation []. |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=89.14 E-value=5.9 Score=31.69 Aligned_cols=60 Identities=22% Similarity=0.247 Sum_probs=40.1
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 005000 290 TGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIV 352 (720)
Q Consensus 290 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 352 (720)
..+...|++++|..+.+.+.-||...|-++... +.|..+++..-+.+|..+| .|...+|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 345566777777777777777777777766543 5677777777777777776 55544443
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=88.40 E-value=16 Score=32.55 Aligned_cols=90 Identities=19% Similarity=0.151 Sum_probs=58.2
Q ss_pred HHHHhcCChhhHHHHHHHHHHHcCCCccH-HHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHH
Q 005000 457 SACTHTGMVDEGREYFADMTIQHGIEPNE-AHYGCMVDLLGRAGHLNEALEVIKNMP-MKPNSIVWGALLGACRVHRDAE 534 (720)
Q Consensus 457 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~eA~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~ 534 (720)
+.-...++.+.+..++..+. -+.|.. +.-..-...+.+.|++.+|..+|+++. -.|....-.+|+..|.....-.
T Consensus 18 ~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 33456678888888888775 345543 222234455778899999999998883 3345555567777776655545
Q ss_pred HHHHHHHHHHhcCCC
Q 005000 535 MAEMAAKQILELDPD 549 (720)
Q Consensus 535 ~a~~~~~~~~~~~p~ 549 (720)
.=....+++++..++
T Consensus 95 ~Wr~~A~evle~~~d 109 (160)
T PF09613_consen 95 SWRRYADEVLESGAD 109 (160)
T ss_pred HHHHHHHHHHhcCCC
Confidence 556666777776664
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=88.38 E-value=2.5 Score=29.65 Aligned_cols=51 Identities=10% Similarity=0.131 Sum_probs=39.9
Q ss_pred hHHHHHhHhhhcCChhHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHHhcCc
Q 005000 553 VYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGY 629 (720)
Q Consensus 553 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~ 629 (720)
....++-.+.+.|++++|.+..+.+.+ ..|.+.++..+-..+..++.+.|.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~--------------------------~eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLE--------------------------IEPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--------------------------HTTS-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------hCCCcHHHHHHHHHHHHHHhccCC
Confidence 356688889999999999999998876 357778888888888888888773
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.12 E-value=3.3 Score=40.65 Aligned_cols=73 Identities=12% Similarity=0.218 Sum_probs=56.8
Q ss_pred hHhhHHhhhhhhcCCHHHHHHHHHhccCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCChHHHHHH
Q 005000 384 FVGNALIDMYCKCGDVEKAQRVFREMLRK---DKFTWTAMIVGLAINGHGDKSLDMFSQMLR-----ASIIPDEVTYVGV 455 (720)
Q Consensus 384 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~l 455 (720)
.++..++..+..+|+.+.+.+.+++.... |...|..++.+|.+.|+...|+..|+++.. .|+.|...+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45677888889999999999998888643 667899999999999999999999888765 5666665554443
Q ss_pred H
Q 005000 456 L 456 (720)
Q Consensus 456 l 456 (720)
.
T Consensus 234 ~ 234 (280)
T COG3629 234 E 234 (280)
T ss_pred H
Confidence 3
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=87.59 E-value=55 Score=36.96 Aligned_cols=58 Identities=19% Similarity=0.237 Sum_probs=33.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCcc-hH-----HHHHhHhhhcCChhHHHHHHHHHH
Q 005000 521 GALLGACRVHRDAEMAEMAAKQILELD---PDNEA-VY-----VLLCNIYAACNRWDNFRELRQMIL 578 (720)
Q Consensus 521 ~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~~~-~~-----~~l~~~~~~~g~~~~a~~~~~~m~ 578 (720)
.++++.-.-.|+..+..........+- |+... .+ ..+.+.|...|+.++|.+...+..
T Consensus 538 L~lm~~~lf~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 538 LNLMGHRLFEGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 334444333677777655555555432 33222 22 245566888899999998877653
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=87.24 E-value=1.7 Score=42.90 Aligned_cols=86 Identities=14% Similarity=0.118 Sum_probs=59.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 005000 421 IVGLAINGHGDKSLDMFSQMLRASIIP-DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAG 499 (720)
Q Consensus 421 i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 499 (720)
..-|.++|.+++|+..|.+-+. +.| |.+++..-..||.+...+..|..-...... . -...+.+|.|.|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia-----L----d~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA-----L----DKLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH-----h----hHHHHHHHHHHH
Confidence 3569999999999999998776 466 889999999999999888877766655431 1 123455666554
Q ss_pred -------CHHHHHHHHHhC-CCCCCH
Q 005000 500 -------HLNEALEVIKNM-PMKPNS 517 (720)
Q Consensus 500 -------~~~eA~~~~~~~-~~~p~~ 517 (720)
+..||.+-++.. .++|+.
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCccc
Confidence 455555544443 466763
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=87.21 E-value=13 Score=37.21 Aligned_cols=63 Identities=16% Similarity=0.143 Sum_probs=41.9
Q ss_pred hHHHHHHHHhHhCCCCCCcccHHHHHHHHhc--c----CChHHHHHHHHHHHHhCC---CCChhHHHHHHHH
Q 005000 97 KNGVLIYLDMLKSDVRPDNYTFPFLLKGFTR--D----IAVEFGKELHCHVLKFGF---DSSVFVQNALIST 159 (720)
Q Consensus 97 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~--~----~~~~~a~~~~~~~~~~g~---~~~~~~~~~li~~ 159 (720)
++.+++++.|.+.|++-+.++|.+..-.... . .....++++|+.|.+..+ .++-.++.+|+..
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~ 150 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM 150 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc
Confidence 3456688889999998888877664444333 1 235678889999988653 3445566666554
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=87.11 E-value=6.9 Score=33.37 Aligned_cols=89 Identities=11% Similarity=0.117 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHh-cCCC-CcchHHHHHhHhhhcCChhHHHHHHHHHHhCCCccCCcccE
Q 005000 516 NSIVWGALLGACRVHR---DAEMAEMAAKQILE-LDPD-NEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSM 590 (720)
Q Consensus 516 ~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~-~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 590 (720)
...+--.+.++..+.. +..+++.+++.+++ -.|+ .-...+.|+-.+.+.|+|+.+.+..+...+.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~---------- 100 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET---------- 100 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh----------
Confidence 3333344444444333 45667777777775 3343 2334445666677777777777777766542
Q ss_pred EEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHHhcCcc
Q 005000 591 IEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYM 630 (720)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~ 630 (720)
.|++.++..+=+.+..+|++.|++
T Consensus 101 ----------------e~~n~Qa~~Lk~~ied~itkegli 124 (149)
T KOG3364|consen 101 ----------------EPNNRQALELKETIEDKITKEGLI 124 (149)
T ss_pred ----------------CCCcHHHHHHHHHHHHHHhhccee
Confidence 244455555555555677777663
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=87.08 E-value=20 Score=32.28 Aligned_cols=133 Identities=16% Similarity=0.130 Sum_probs=86.1
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcC--CHHHHHHHHhhCCCCCcc
Q 005000 237 RAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRG--QVDMARQYFDQMPERDYV 314 (720)
Q Consensus 237 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~f~~~~~~~~~ 314 (720)
+....+.+.+++|+..++..+++.+.+.|++..-..++.--.-+|.......+-.+.... -..-|.+.+.++ ..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL----~~ 90 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL----GT 90 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh----hh
Confidence 455666778999999999999999999999988888776544444433333332222111 123344444444 23
Q ss_pred chHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 005000 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKN 377 (720)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~ 377 (720)
.+..++..+...|++-+|+++.+..... +......++.+..+.++...--.++....+.
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5667788899999999999998775332 2222345667777777766666666666554
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=86.97 E-value=3.1 Score=38.38 Aligned_cols=76 Identities=22% Similarity=0.265 Sum_probs=53.8
Q ss_pred HHhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CcchHHHHHhHhhhcCChh
Q 005000 495 LGRAGHLNEALEVIKNMPMKP--NSIVWGALLGACRVHRDAEMAEMAAKQILELDPD----NEAVYVLLCNIYAACNRWD 568 (720)
Q Consensus 495 ~~~~g~~~eA~~~~~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~ 568 (720)
..+.|+ ++|++.|-.+.-.| +....-..+..|....|.++++.++-+++++.+. |+..+..|+.+|.+.|+++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 344454 45666666663333 3344444555566678899999999999987432 6889999999999999998
Q ss_pred HHH
Q 005000 569 NFR 571 (720)
Q Consensus 569 ~a~ 571 (720)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 875
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=86.96 E-value=3.7 Score=36.37 Aligned_cols=52 Identities=17% Similarity=0.187 Sum_probs=28.3
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 529 VHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 529 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
..++.+.++.++..+.-+.|..+..-..-++++...|+|.+|.++++.+.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 4445555555555555555555555555555555555555555555555433
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=86.89 E-value=41 Score=34.73 Aligned_cols=148 Identities=10% Similarity=0.016 Sum_probs=75.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---ChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCcc--HHH
Q 005000 413 DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP---DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN--EAH 487 (720)
Q Consensus 413 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~ 487 (720)
...+|..++..+.+.|+++.|...+.++...+..+ +......-+...-..|+-++|...++..... .+..+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 44577777888888888888888888877643211 1222223344455667778888777766531 11111 111
Q ss_pred HHHHHHHHHhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhcCCCCcchHHHHHhH
Q 005000 488 YGCMVDLLGRAGHLNEALEV-IKNMPMKPNSIVWGALLGACRVH------RDAEMAEMAAKQILELDPDNEAVYVLLCNI 560 (720)
Q Consensus 488 ~~~li~~~~~~g~~~eA~~~-~~~~~~~p~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 560 (720)
...+...+.. ..+..... ......+.-...+..+..-+... ++.+.+...++++.++.|.....+..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111100000 00000000 00000000112233333333333 788889999999999999887777777766
Q ss_pred hhh
Q 005000 561 YAA 563 (720)
Q Consensus 561 ~~~ 563 (720)
+.+
T Consensus 302 ~~~ 304 (352)
T PF02259_consen 302 NDK 304 (352)
T ss_pred HHH
Confidence 543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=86.35 E-value=11 Score=33.73 Aligned_cols=50 Identities=14% Similarity=0.214 Sum_probs=26.0
Q ss_pred hcCCHHHHHHHHhhCCCCCccchHHHH-----HHHHhcCChhHHHHHHHHHHHCC
Q 005000 294 NRGQVDMARQYFDQMPERDYVLWTAMI-----DGYLRVNRFREALTLFREMQTSN 343 (720)
Q Consensus 294 ~~g~~~~A~~~f~~~~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~g 343 (720)
+.+..++|..-|..+.+.+.-.|-.|. ....+.|+...|...|.+.-...
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt 124 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT 124 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC
Confidence 344455555555555444444443332 23455666666666666665443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=86.06 E-value=4.3 Score=35.37 Aligned_cols=53 Identities=13% Similarity=0.125 Sum_probs=42.4
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 529 VHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 529 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
..++.+.++.++..+.-+.|+.+..-..-+.++...|+|++|.++++...+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 36778888888888888888888888888888888888888888888776655
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=85.06 E-value=24 Score=32.30 Aligned_cols=93 Identities=12% Similarity=0.079 Sum_probs=42.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCcc------HHHH
Q 005000 417 WTAMIVGLAINGHGDKSLDMFSQMLRASIIPDE--VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN------EAHY 488 (720)
Q Consensus 417 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~------~~~~ 488 (720)
+..+..-|.+.|+.++|++.|.++.+....|.. ..+..++..+...+++..+.....++..-..-..| ...|
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~ 118 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVY 118 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 334444455555555555555555544333333 23344555555555555555555544311111011 1122
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC
Q 005000 489 GCMVDLLGRAGHLNEALEVIKNM 511 (720)
Q Consensus 489 ~~li~~~~~~g~~~eA~~~~~~~ 511 (720)
..+. +...+++.+|-+.|-..
T Consensus 119 ~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 119 EGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHH--HHHhchHHHHHHHHHcc
Confidence 2222 23456777777776655
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=84.77 E-value=50 Score=34.05 Aligned_cols=67 Identities=13% Similarity=0.184 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CcchHHHHHhHhhhcCChhHHHHHHHHHHhCCC
Q 005000 516 NSIVWGALLGACRVHRDAEMAEMAAKQILELDPD----NEAVYVLLCNIYAACNRWDNFRELRQMILDRGI 582 (720)
Q Consensus 516 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 582 (720)
...+|..+...+++.|+++.|...+.++...++. .+.....-+.+....|+-++|...++...+..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 5678999999999999999999999999986532 467777889999999999999999888876333
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=84.66 E-value=4 Score=40.11 Aligned_cols=60 Identities=18% Similarity=0.127 Sum_probs=54.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 520 WGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 520 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
.+.+-.++.+.++++.|..+.+.++.+.|+++.-+.-.+-+|.+.|.+..|..-++.-.+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 466778899999999999999999999999999899999999999999999998887765
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.28 E-value=38 Score=32.10 Aligned_cols=23 Identities=17% Similarity=-0.021 Sum_probs=15.2
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCC
Q 005000 528 RVHRDAEMAEMAAKQILELDPDN 550 (720)
Q Consensus 528 ~~~g~~~~a~~~~~~~~~~~p~~ 550 (720)
...+++.+|+.+|+++.....+|
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 45567777888887776654443
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=83.95 E-value=2.3 Score=29.80 Aligned_cols=33 Identities=24% Similarity=0.223 Sum_probs=26.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchH
Q 005000 522 ALLGACRVHRDAEMAEMAAKQILELDPDNEAVY 554 (720)
Q Consensus 522 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 554 (720)
.+.-++.+.|+++.|.+..+.+++++|+|..+-
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 455678999999999999999999999986543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.95 E-value=4.6 Score=39.66 Aligned_cols=59 Identities=20% Similarity=0.219 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 521 GALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 521 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
..++..+...|+++.+...++++++.+|-+...|..+..+|.+.|+...|+..++.+.+
T Consensus 157 ~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 157 TKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34444445555555555555555555555555555555555555555555555555543
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=83.77 E-value=1.5 Score=38.53 Aligned_cols=53 Identities=11% Similarity=0.066 Sum_probs=25.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHH
Q 005000 187 MFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAH 239 (720)
Q Consensus 187 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 239 (720)
+|..+.+.+.++....+++.+...+...+....+.++..|++.++.+....++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L 65 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFL 65 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHc
Confidence 34445555555555555555554443344444455555555554444444443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=83.77 E-value=2.7 Score=25.95 Aligned_cols=28 Identities=11% Similarity=0.157 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005000 415 FTWTAMIVGLAINGHGDKSLDMFSQMLR 442 (720)
Q Consensus 415 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 442 (720)
.+|..+...|...|++++|+..|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3566666677777777777777777665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.41 E-value=12 Score=36.77 Aligned_cols=97 Identities=10% Similarity=0.262 Sum_probs=71.7
Q ss_pred cCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCC---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 005000 377 NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK---------DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP 447 (720)
Q Consensus 377 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 447 (720)
.|.+....+...++..-....+++++...+-+.... ...+|-.++ -.=++++++.++..=+..|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhcccc
Confidence 445555666667777777778888888888776422 223333332 2346778998888888899999
Q ss_pred ChHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 005000 448 DEVTYVGVLSACTHTGMVDEGREYFADMTI 477 (720)
Q Consensus 448 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 477 (720)
|..|++.++..+.+.+++.+|.++.-.|..
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 999999999999999999998888777653
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=83.26 E-value=1.6 Score=26.85 Aligned_cols=29 Identities=14% Similarity=0.197 Sum_probs=24.6
Q ss_pred chHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 552 AVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 552 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
..+..++.+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999988653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=82.34 E-value=12 Score=34.26 Aligned_cols=92 Identities=15% Similarity=0.017 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhCC---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCcchH----
Q 005000 486 AHYGCMVDLLGRAGHLNEALEVIKNMP---MKP--NSIVWGALLGACRVHRDAEMAEMAAKQILELD--PDNEAVY---- 554 (720)
Q Consensus 486 ~~~~~li~~~~~~g~~~eA~~~~~~~~---~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~---- 554 (720)
..+..+.+.|.+.|+.++|.+.+.++. ..| -...+..++..+...+++..+.....++..+- +.++..-
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 345567777778888888888777762 112 23455677777777788887777777766542 2222211
Q ss_pred HHHHhHhhhcCChhHHHHHHHHH
Q 005000 555 VLLCNIYAACNRWDNFRELRQMI 577 (720)
Q Consensus 555 ~~l~~~~~~~g~~~~a~~~~~~m 577 (720)
..-+-.+...|+|.+|.+.|-..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 11222334567888888876543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=82.04 E-value=12 Score=29.87 Aligned_cols=63 Identities=11% Similarity=0.224 Sum_probs=47.8
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHH
Q 005000 429 HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVD 493 (720)
Q Consensus 429 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 493 (720)
+.-++.+-++.+....+.|+.....+.+.||.+.+++..|.++|+..+.+.+ .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 3345566666777777899999999999999999999999999998864433 34556766653
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=81.92 E-value=96 Score=34.99 Aligned_cols=85 Identities=14% Similarity=0.077 Sum_probs=39.6
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC-CCCChhHhhHHhhhhhh---c
Q 005000 321 DGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNK-VKNDIFVGNALIDMYCK---C 396 (720)
Q Consensus 321 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~-~~~~~~~~~~li~~y~~---~ 396 (720)
..+.-.|+++.|++.+-+ ..+...|.+.+...+.-+.-+.-..... ..+.... -.|...-+..||..|.+ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 345567888888888766 2334556666666665544333222211 1111111 01111345677777775 5
Q ss_pred CCHHHHHHHHHhcc
Q 005000 397 GDVEKAQRVFREML 410 (720)
Q Consensus 397 g~~~~A~~~~~~~~ 410 (720)
.++.+|.+.|--+.
T Consensus 341 td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 341 TDPREALQYLYLIC 354 (613)
T ss_dssp T-HHHHHHHHHGGG
T ss_pred cCHHHHHHHHHHHH
Confidence 67888888887664
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=81.62 E-value=1.7 Score=25.16 Aligned_cols=24 Identities=17% Similarity=0.052 Sum_probs=18.4
Q ss_pred chHHHHHhHhhhcCChhHHHHHHH
Q 005000 552 AVYVLLCNIYAACNRWDNFRELRQ 575 (720)
Q Consensus 552 ~~~~~l~~~~~~~g~~~~a~~~~~ 575 (720)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356678888888888888887764
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.55 E-value=28 Score=32.10 Aligned_cols=68 Identities=21% Similarity=0.155 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 005000 488 YGCMVDLLGRAGHLNEALEVIKNM-PMKPN-SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYV 555 (720)
Q Consensus 488 ~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 555 (720)
|..-..++.+.+.++.|++-..+. .+.|. ......-..+|.+...++.|+.-|+++++.+|....+--
T Consensus 137 y~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~ 206 (271)
T KOG4234|consen 137 YSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREARE 206 (271)
T ss_pred HhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHH
Confidence 334445566666777766665554 34442 122222335677778889999999999999987644433
|
|
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=81.33 E-value=73 Score=33.21 Aligned_cols=179 Identities=15% Similarity=0.181 Sum_probs=117.2
Q ss_pred cCCHHHHHHHHHhccC----CCHHHHHHHHHHH-HHcCChHHHHHHHHHHHHCCCCCCh----HHHHHHHHHHHhcCChh
Q 005000 396 CGDVEKAQRVFREMLR----KDKFTWTAMIVGL-AINGHGDKSLDMFSQMLRASIIPDE----VTYVGVLSACTHTGMVD 466 (720)
Q Consensus 396 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~-~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~ 466 (720)
.|+.++|.+.+..+.. +....+-+|+.+- ....++.+|+++|++..-. .|.. ....--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5888888888888743 2455667776554 4466889999999987653 4543 23444455667889999
Q ss_pred hHHHHHHHHHHHcCCCccHHHHHH-HHHHHHhc---CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005000 467 EGREYFADMTIQHGIEPNEAHYGC-MVDLLGRA---GHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQ 542 (720)
Q Consensus 467 ~a~~~~~~m~~~~~~~p~~~~~~~-li~~~~~~---g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 542 (720)
++..+-..-...+...|-...|.. ++..+.+. -..+.-..++..|.-.--...|..+...-...|+.+.|..+.++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 988777766666666776544432 33344333 34455555666663222456888888999999999999999999
Q ss_pred HHhcCCCCcchHHHHHhHhhh-----cCChhHHHHHHHHH
Q 005000 543 ILELDPDNEAVYVLLCNIYAA-----CNRWDNFRELRQMI 577 (720)
Q Consensus 543 ~~~~~p~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m 577 (720)
++.+... ...-...+.+|.. ..+.+++.+.++.+
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 9998643 3334445555543 34466666655544
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=81.27 E-value=14 Score=33.53 Aligned_cols=46 Identities=17% Similarity=0.130 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCC----hhHHHHHHHHHH
Q 005000 533 AEMAEMAAKQILELDPDNEAVYVLLCNIYAACNR----WDNFRELRQMIL 578 (720)
Q Consensus 533 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~a~~~~~~m~ 578 (720)
+++|+.-+++++.++|+...++.+++++|...+. -.+|.+.|++..
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 5667888888999999999999999999987654 345555555553
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=81.18 E-value=11 Score=30.39 Aligned_cols=60 Identities=10% Similarity=0.207 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHH
Q 005000 432 KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVD 493 (720)
Q Consensus 432 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 493 (720)
+..+-++.+....+.|+.....+.|.||.+.+++..|.++|+.++.+.+.. ...|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 455555666667788999999999999999999999999999987555433 336766654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=80.93 E-value=14 Score=38.52 Aligned_cols=119 Identities=17% Similarity=0.235 Sum_probs=81.7
Q ss_pred HcCChHHHH-HHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 005000 426 INGHGDKSL-DMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEA 504 (720)
Q Consensus 426 ~~g~~~~A~-~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA 504 (720)
..|+...|- +++..+....-.|+.+-..+.+ ..+.|.++.+.+.+.... .-+.....+..+++....+.|++++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~--~~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVE--KIIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchh--hhhcCCchHHHHHHHhhhchhhHHHH
Confidence 457776655 4555555555566666555443 678899999888887763 23445566778888888888899998
Q ss_pred HHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005000 505 LEVIKNM---PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPD 549 (720)
Q Consensus 505 ~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 549 (720)
..+-..| +++ ++.............|-++++...+++++.+.|+
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 8888777 222 4444444445566777888888888888888765
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=80.91 E-value=2.9 Score=24.56 Aligned_cols=30 Identities=30% Similarity=0.163 Sum_probs=16.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005000 520 WGALLGACRVHRDAEMAEMAAKQILELDPD 549 (720)
Q Consensus 520 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 549 (720)
|..+...+...|+++.|...+++.++..|+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 444555555556666666666665555553
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=80.81 E-value=2.5 Score=27.45 Aligned_cols=28 Identities=29% Similarity=0.358 Sum_probs=22.1
Q ss_pred chHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 552 AVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 552 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
.++..|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4577888899999999999998888755
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.80 E-value=1 Score=44.56 Aligned_cols=90 Identities=12% Similarity=0.213 Sum_probs=68.6
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHH
Q 005000 497 RAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELR 574 (720)
Q Consensus 497 ~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 574 (720)
..|.+++|++.|... ++.| ....|.--.+++.+.++...|++-+..+++++|+....|-..+.+....|+|++|.+.+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 356677777777766 4444 44555555677778888888888888888999988888888888888889999999888
Q ss_pred HHHHhCCCccCC
Q 005000 575 QMILDRGIKKTP 586 (720)
Q Consensus 575 ~~m~~~~~~~~~ 586 (720)
....+.+.....
T Consensus 206 ~~a~kld~dE~~ 217 (377)
T KOG1308|consen 206 ALACKLDYDEAN 217 (377)
T ss_pred HHHHhccccHHH
Confidence 888877765443
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=80.59 E-value=2.9 Score=25.41 Aligned_cols=27 Identities=19% Similarity=0.112 Sum_probs=13.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005000 523 LLGACRVHRDAEMAEMAAKQILELDPD 549 (720)
Q Consensus 523 ll~~~~~~g~~~~a~~~~~~~~~~~p~ 549 (720)
+..++...|+.++|...++++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 334444555555555555555555554
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=80.41 E-value=68 Score=32.25 Aligned_cols=49 Identities=12% Similarity=0.329 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--c----CcHHHHHHHHHHHHHc
Q 005000 329 FREALTLFREMQTSNIRPDEFTIVSILTACAN--L----GALELGEWVKTYIDKN 377 (720)
Q Consensus 329 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~----~~~~~a~~i~~~~~~~ 377 (720)
+++.+.+++.|.+.|++-+..+|.+....... . .....+..+++.|.+.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 34556677888888888877777664433332 1 1344556666666664
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 72.9 bits (177), Expect = 2e-13
Identities = 27/229 (11%), Positives = 66/229 (28%), Gaps = 7/229 (3%)
Query: 294 NRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVS 353
+ + ++ T + R+ + A L + + P E +
Sbjct: 38 QMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLAR 97
Query: 354 ILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK- 412
+L +L++ + + ++ A + A + +
Sbjct: 98 LLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQR 157
Query: 413 ------DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVD 466
+ A+++G A G + + + + A + PD ++Y L
Sbjct: 158 QKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDA 217
Query: 467 EGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKP 515
E + Q G++ ++ RA L +V + P
Sbjct: 218 GTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPP 266
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 56.0 bits (133), Expect = 4e-08
Identities = 17/146 (11%), Positives = 45/146 (30%), Gaps = 9/146 (6%)
Query: 106 MLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGE 165
++ P LL+ ++++ + + A L +
Sbjct: 83 TRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQ 142
Query: 166 VDMARGIFDVSYKD-------DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVT 218
+ +A + V + + +NA+ G+ R F E + ++ G+ P ++
Sbjct: 143 LPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202
Query: 219 IVLVLSACAKLKDLDVGKRAHRYVKE 244
L + R +++
Sbjct: 203 YAAALQCMGRQDQDA--GTIERCLEQ 226
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 48.3 bits (113), Expect = 8e-06
Identities = 22/167 (13%), Positives = 49/167 (29%), Gaps = 14/167 (8%)
Query: 191 YKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECK---- 246
D + G+ + + ++ C L AH +
Sbjct: 102 APGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLP---LAHHLLVVHHGQRQ 158
Query: 247 --IVPNLILENALTDMYAACGEMGFALEIFGNIKNK----DVISWTAIVTGYINRGQ-VD 299
+ L + NA+ +A G + + +K+ D++S+ A + + Q
Sbjct: 159 KRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAG 218
Query: 300 MARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRP 346
+ +QM + L L L +++ + P
Sbjct: 219 TIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLP 265
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 47.1 bits (110), Expect = 2e-05
Identities = 28/222 (12%), Positives = 63/222 (28%), Gaps = 18/222 (8%)
Query: 3 SNSSISPPSTLTQETPLISPIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTF--CCS 60
Q L+ S+ + Q + L Q +L+ F CC
Sbjct: 82 CTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQ---QQRLLAFFKCCL 138
Query: 61 EKGDMKYACKVF-------RKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRP 113
+ A + +K ++ ++N ++ G++R + K V + + + + P
Sbjct: 139 LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP 198
Query: 114 DNYTFPFLLKGFTR-DIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGI 172
D ++ L+ R D + + + G L+S + +
Sbjct: 199 DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258
Query: 173 FD-----VSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMER 209
V T + Y + + +
Sbjct: 259 KPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTL 300
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 63.7 bits (154), Expect = 2e-10
Identities = 75/575 (13%), Positives = 168/575 (29%), Gaps = 197/575 (34%)
Query: 231 DLDVGKRAHRY-----------VK--ECKIVPNLILENALTDMYAACGEMGFALEIFGNI 277
D + G+ ++Y V +CK V ++ ++ L+ + I
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDM-PKSILSK--EEIDHI---------I 55
Query: 278 KNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFR 337
+KD +S T + + Q +M +++ +++ +Y + L
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK-F------------------LMS 96
Query: 338 EMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYID-KNKVKNDIFVGNALIDMYCKC 396
++T +P T + YI+ ++++ ND N + Y
Sbjct: 97 PIKTEQRQPSMMT--------------------RMYIEQRDRLYND----NQVFAKY--- 129
Query: 397 GDVEKAQRV--FREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII----PDEV 450
+V + Q R+ L + + +I G+ G G K+ + + + + ++
Sbjct: 130 -NVSRLQPYLKLRQALLELRPAKNVLIDGVL--GSG-KTW-VALDVCLSYKVQCKMDFKI 184
Query: 451 TYVGVLSACTHTGMVDEGREYFADM-TIQHGIEPN---EAHYGCMVDLLGRAGHLNEALE 506
++ + + + + + I+PN + + + L R + L
Sbjct: 185 FWLNL-------KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL--RIHSIQAELR 235
Query: 507 VIKNMPMKPNSI----------VWGALLGACRV---HRDA-------------------- 533
+ N + W A +C++ R
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 534 ------EMAEMAAKQILELDPD---NEAVYV--LLCNIYAA-----CNRWDNFRELRQMI 577
E+ + K L+ P E + +I A WDN++ +
Sbjct: 296 MTLTPDEVKSLLLK-YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 578 LDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPD---IS 634
L I+ + + L+ E + P I
Sbjct: 355 LTTIIESS-----LN---------------------VLEPAEYRKMFDRLSVFPPSAHIP 388
Query: 635 EVFLDV----GEEDKERAVYQHSEKLAMAFG----LISSGPGVTIRIVKNL-------RM 679
+ L + + V K ++ S P + + + L R
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS 448
Query: 680 CVDCHRMAKLVSMVYDREVIVRDKTR---FHHFKH 711
VD + + K +D + ++ + H H
Sbjct: 449 IVDHYNIPK----TFDSDDLIPPYLDQYFYSHIGH 479
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.6 bits (151), Expect = 3e-10
Identities = 75/597 (12%), Positives = 166/597 (27%), Gaps = 172/597 (28%)
Query: 95 SHKNGVLIYLDMLKSDVRPDNYTFPFLLKG-FTR----DIAVEFGKELHCHVLKFGFDS- 148
+K+ + ++ D + D + K ++ I + L F +
Sbjct: 17 QYKDILSVFEDAFVDNF--DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL---FWTL 71
Query: 149 --------SVFVQNALISTY--------CLCGEVDMARGIFDVSYKDDVVTWNAMFSGY- 191
FV+ L Y + M ++ + +D + N +F+ Y
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY-IEQRDRLYNDNQVFAKYN 130
Query: 192 -KRVKQFDETRKLFGEMERKGVLPTSVTI---------VLVLSACAKLKDLDVGKRAHRY 241
R++ + + R+ E+ +V I + L C V +
Sbjct: 131 VSRLQPYLKLRQALLELRPAK----NVLIDGVLGSGKTWVALDVC---LSYKVQCKMDFK 183
Query: 242 V-----KECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRG 296
+ K C P +LE L + +I N WT+ N
Sbjct: 184 IFWLNLKNCNS-PETVLEM-LQKLL---------YQIDPN--------WTSRSDHSSN-- 222
Query: 297 QVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTI---VS 353
+ + + L+ + L + +Q + + F + +
Sbjct: 223 ----IKLRIHSIQAE--------LRRLLKSKPYENCLLVLLNVQNAKAW-NAFNLSCKIL 269
Query: 354 ILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDV------EKAQRV-- 405
+ T + L T+I + + + + + K D +
Sbjct: 270 LTTRFKQV-TDFLSAATTTHISLDHH-SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 406 -----FREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACT 460
E +R TW + + D + ++ +S+ VL
Sbjct: 328 RRLSIIAESIRDGLATW---------DNWKHVNCDKLTTIIESSL--------NVLEP-- 368
Query: 461 HTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVW 520
E R+ F + + P A ++P S++W
Sbjct: 369 -----AEYRKMFDRL----SVFPPSA-----------------------HIPTILLSLIW 396
Query: 521 GALLGACRVHRDAE--MAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMIL 578
+ + D + ++ ++E P + + + +N L + I+
Sbjct: 397 FDV-----IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL-ENEYALHRSIV 450
Query: 579 DR-GIKKT---PGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTS---DLKFVG 628
D I KT ++ + + H + E ++ D +F+
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIG---HHLKNIEHPERMTLFRMVFLDFRFLE 504
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 54.0 bits (129), Expect = 6e-08
Identities = 35/207 (16%), Positives = 71/207 (34%), Gaps = 16/207 (7%)
Query: 249 PNLILENALTDMYAACGEMGFALEIF-----GNIKNKDVISWTAIVTGYINRGQVDMARQ 303
P L + A+ + ++ + + Y D A +
Sbjct: 63 PELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALR 122
Query: 304 YFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANL-- 361
Q + + T I L+++R A ++MQ + D T+ + TA +L
Sbjct: 123 TLHQGDSLECMAMTVQI--LLKLDRLDLARKELKKMQ--DQDED-ATLTQLATAWVSLAA 177
Query: 362 GALELGEWVKTYID-KNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKF---TW 417
G +L + + + +K + + N + G E A+ V +E L KD T
Sbjct: 178 GGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237
Query: 418 TAMIVGLAINGHGDKSLDMFSQMLRAS 444
++V G + + + L+ +
Sbjct: 238 INLVVLSQHLGKPPEVTNRYLSQLKDA 264
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 4e-04
Identities = 27/222 (12%), Positives = 67/222 (30%), Gaps = 14/222 (6%)
Query: 363 ALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIV 422
+ + VK + V+ D+F+ A + + +
Sbjct: 18 CINEAQRVKPSSPERDVERDVFLYRAYLAQ----RKYGVVLDEIKPSSAPELQAVRMFAE 73
Query: 423 GLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIE 482
LA + D + + + S+ T++ + ++ + A T+ G
Sbjct: 74 YLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASI----YFYDQNPDAALRTLHQGDS 129
Query: 483 PNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPNSIVWGALLGACRVHR---DAEMAEM 538
V +L + L+ A + +K M ++ + + + A
Sbjct: 130 LE--CMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYY 187
Query: 539 AAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580
+++ + + + A RW+ + Q LD+
Sbjct: 188 IFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 3e-06
Identities = 49/343 (14%), Positives = 105/343 (30%), Gaps = 38/343 (11%)
Query: 250 NLILENALTDMYAACGEMGFALEIFGNIKNKDVISW-TAIVTGYINRGQVDMARQYF--- 305
L+ + LT + + + S + + ++ A Y
Sbjct: 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSI 298
Query: 306 DQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTAC-ANLGAL 364
+ + + L D +RF + L + ++ I P + + A G
Sbjct: 299 NGLEK-SSDLLLCKADTLFVRSRFIDVLAITTKIL--EIDPYNLDVYPLHLASLHESGEK 355
Query: 365 -ELGEWVKTYIDKNKVKNDIF--VGNALIDMYCKCGDVEKAQRVFREMLRKD-KFT--WT 418
+L +D++ K + VG + + + +A+R F + D +F W
Sbjct: 356 NKLYLISNDLVDRHPEKAVTWLAVGIYYLCV----NKISEARRYFSKSSTMDPQFGPAWI 411
Query: 419 AMIVGLAINGHGDKSLDMFSQMLRASIIPDEVT---YVGVLSACTHTGMVDEGREYFADM 475
AI G D+++ ++ R + ++G+ G + EY
Sbjct: 412 GFAHSFAIEGEHDQAISAYTTAAR--LFQGTHLPYLFLGM--QHMQLGNILLANEYL-QS 466
Query: 476 TIQHGIEPNEAH-YGCMVDLLGRAGHLNEALE--------VIKNMPMKPNSI-VWGALLG 525
+ + + + + + A+ V K + W L
Sbjct: 467 SYA--LFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGH 524
Query: 526 ACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWD 568
A R + + A A Q L L ++ V+ + +Y
Sbjct: 525 AYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPG 567
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 36/297 (12%), Positives = 77/297 (25%), Gaps = 54/297 (18%)
Query: 292 YINRGQVDMARQYFDQM----PERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPD 347
+ + Q A +++ + W A + Y + A L +
Sbjct: 94 ALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQV--YCCTGDYARAKCLLTKED--LYNRS 149
Query: 348 EFTIVSILTACANLG----ALELGEWVKTYIDKNKVKNDIFVGNALIDM----------- 392
L AL L + K N + + + I +
Sbjct: 150 SACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQV 209
Query: 393 YCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY 452
Y + ++A+ ++E L D + A ++ H + + + +L+ +
Sbjct: 210 YTNLSNFDRAKECYKEALMVDAKCYEAF--DQLVSNHLLTADEEWDLVLKLN-------- 259
Query: 453 VGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMP 512
+ + Y ++ L A + + ++
Sbjct: 260 --------------------YSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSIN 299
Query: 513 MKPNSI-VWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWD 568
S + V +ILE+DP N VY L +
Sbjct: 300 GLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKN 356
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 3e-06
Identities = 43/278 (15%), Positives = 85/278 (30%), Gaps = 38/278 (13%)
Query: 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTAC-ANLGAL-ELGEWVKT 372
+ ++ + + F+ L + P + + + L EL
Sbjct: 24 VVVSLAERHYYNCDFKMCYKLTSVV--MEKDPFHASCLPVHIGTLVELNKANELFYLSHK 81
Query: 373 YIDKNKVKNDIF----VGNALIDMYCKCGDVEKAQRVFREMLRKD-KFT--WTAMIVGLA 425
+D ++ VG E A+R + + + W A A
Sbjct: 82 LVDLYP--SNPVSWFAVGCYY---LMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFA 136
Query: 426 INGHGDKSLDMFSQMLRASIIPDEVT---YVGVLSACTHTGMVDEGREYFADMTIQHGIE 482
+ D+++ + + ++ Y+G+ T +F + I
Sbjct: 137 VESEHDQAMAAYFTAAQ--LMKGCHLPMLYIGL--EYGLTNNSKLAERFF-SQALS--IA 189
Query: 483 PN--EAHY--GCMVDLLGR----AGHLNEALEVIKNMPMKPNSIVWGAL---LG-ACRVH 530
P + G + G +ALE IK + + W L LG CR
Sbjct: 190 PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL 249
Query: 531 RDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWD 568
+ A +Q L L P N + Y + I++ ++
Sbjct: 250 KKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFE 287
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 1e-05
Identities = 40/315 (12%), Positives = 75/315 (23%), Gaps = 42/315 (13%)
Query: 276 NIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPE--RDYVL-WTAMIDGYLRVNRFREA 332
N+ V++ + G V Q V+ + G + +
Sbjct: 186 NLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRL 245
Query: 333 LTLFREMQTSNIRPDEFTIVSILTACANLGAL--ELGEW---VKTYIDKNKVKNDIFV-- 385
L + Q + PD+ + A A+ L + + + D V
Sbjct: 246 LPVLC--QAHGLPPDQ------VVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAI 297
Query: 386 ---GNALIDMYCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQ 439
G + V++ V + + G + L + Q
Sbjct: 298 ASHGGGKQAL----ETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQ 353
Query: 440 MLRASIIPDEV-TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN--EAHYGC-MVDLL 495
+ PD+V V HG+ P+ A L
Sbjct: 354 AH--GLTPDQVVAIASNGGGKQALETVQRLLPVLCQ---AHGLTPDQVVAIASNGGKQAL 408
Query: 496 GRAGHLNEALEVIKN-MPMKPNSIV-WGALLGACRVHRDAEMAEMAAKQILELDPDNEAV 553
+ L V+ + P+ +V + G + + Q L P
Sbjct: 409 ET---VQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVA 465
Query: 554 YVLLCNIYAACNRWD 568
A
Sbjct: 466 IASHDGGKQALETVQ 480
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 2e-05
Identities = 44/314 (14%), Positives = 103/314 (32%), Gaps = 62/314 (19%)
Query: 291 GYINR-------GQVDMARQYFDQMPERD---YVLWTAMIDGYLRVNRFREALTLFREMQ 340
G + G + A ++ Q+ ++ + + + + R +
Sbjct: 1 GPMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFST--L 58
Query: 341 TSNIRPDEFTIVSILTACANLGAL--ELGEW---VKTY-----IDKNKVK--NDIFVGNA 388
P A +NLG + E G+ ++ Y + + + ++ A
Sbjct: 59 AIKQNPLLAE------AYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINL--AAA 110
Query: 389 LIDMYCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASI 445
L+ GD+E A + + L+ + + L G +++ + + +
Sbjct: 111 LVAA----GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE--T 164
Query: 446 IPDEVTYVGVLS----ACTHTGMVDEGREYFADMTIQHGIEPN--EAHYGCMVDLLGRAG 499
P+ + S G + +F + + ++PN +A+ + ++L A
Sbjct: 165 QPN---FAVAWSNLGCVFNAQGEIWLAIHHF-EKAVT--LDPNFLDAYIN-LGNVLKEAR 217
Query: 500 HLNEALE----VIKNMPMKPN-SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVY 554
+ A+ + + PN ++V G L ++A ++ +EL P Y
Sbjct: 218 IFDRAVAAYLRALS---LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY 274
Query: 555 VLLCNIYAACNRWD 568
L N
Sbjct: 275 CNLANALKEKGSVA 288
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 1e-04
Identities = 46/304 (15%), Positives = 104/304 (34%), Gaps = 51/304 (16%)
Query: 292 YINRGQVDMARQYFDQ----MPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPD 347
+ ++D + + P ++ + + Y + +EA+ +R ++PD
Sbjct: 43 HFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQLQEAIEHYR--HALRLKPD 99
Query: 348 EFTIVSILTACANLGAL--ELGEW---VKTY-----IDKNKVK--NDIFVGNALIDMYCK 395
+ NL A G+ V+ Y + + +D+ GN L +
Sbjct: 100 ------FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDL--GNLLKAL--- 148
Query: 396 CGDVEKAQRVFREMLRKD-KFTWTAMIVGLAINGHG--DKSLDMFSQMLRASIIPDEV-T 451
G +E+A+ + + + F +G N G ++ F + + + P+ +
Sbjct: 149 -GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT--LDPNFLDA 205
Query: 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPN--EAHYGCMVDLLGRAGHLNEALE--- 506
Y+ + + + D + + + PN H + + G ++ A++
Sbjct: 206 YINLGNVLKEARIFDRAVAAY-LRALS--LSPNHAVVHGN-LACVYYEQGLIDLAIDTYR 261
Query: 507 -VIKNMPMKPN-SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAAC 564
I+ ++P+ + L A + AE L L P + L NI
Sbjct: 262 RAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318
Query: 565 NRWD 568
+
Sbjct: 319 GNIE 322
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 34/315 (10%), Positives = 69/315 (21%), Gaps = 43/315 (13%)
Query: 277 IKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER---DYVLWTAMIDGYLRVNRFREAL 333
+ + V++ + G V Q V + G + + L
Sbjct: 135 LTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLL 194
Query: 334 TLFREMQTSNIRPDEFTIVSIL-TACANLG-----------ALEL-GEWVKTYIDKNKVK 380
+ Q + P + ++ L A L + V
Sbjct: 195 PVLC--QAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASN---- 248
Query: 381 NDIFVGNALIDMYCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMF 437
G + V++ V + + + G + L +
Sbjct: 249 -----GGGKQAL----ETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVL 299
Query: 438 SQMLRASIIPDEV-TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAH-YGCMVDLL 495
Q + P +V V HG+ P +
Sbjct: 300 CQAHG--LTPQQVVAIASNGGGKQALETVQRLLPVL---CQAHGLTPQQVVAIASHDGGK 354
Query: 496 GRAGHLNEALEVI-KNMPMKPNSIV-WGALLGACRVHRDAEMAEMAAKQILELDPDNEAV 553
+ L V+ + + P +V + G + + Q L P+
Sbjct: 355 QALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVA 414
Query: 554 YVLLCNIYAACNRWD 568
A
Sbjct: 415 IASHDGGKQALETVQ 429
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 4e-04
Identities = 21/123 (17%), Positives = 37/123 (30%), Gaps = 7/123 (5%)
Query: 481 IEPNEAH-YGCMVDLLGRAGHLNEALEVIKN-MPMKPNSI-VWGALLGACRVHRDAEMAE 537
I P A Y M + L + AL+ + + P L + + A
Sbjct: 72 ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAI 131
Query: 538 MAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVV 597
+ + L+L PD Y L + W ++ E + + + V
Sbjct: 132 ASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDER----MKKLVSIVADQLEKNRLPSV 187
Query: 598 HEF 600
H
Sbjct: 188 HPH 190
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 720 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.9 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.88 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.88 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.82 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.81 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.81 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.78 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.77 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.77 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.77 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.76 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.76 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.76 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.74 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.74 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.74 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.72 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.71 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.69 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.69 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.68 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.68 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.68 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.63 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.63 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.62 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.61 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.58 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.58 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.54 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.52 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.51 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.51 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.47 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.47 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.46 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.46 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.45 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.45 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.44 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.44 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.43 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.42 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.42 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.42 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.41 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.41 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.4 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.4 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.4 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.4 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.39 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.39 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.38 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.32 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.31 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.3 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.29 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.26 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.26 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.25 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.25 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.23 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.23 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.23 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.23 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.23 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.22 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.21 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.2 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.17 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.15 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.09 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.04 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.04 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.01 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.98 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.97 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.96 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.95 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.95 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.93 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.91 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.9 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.9 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.89 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.89 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.87 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.87 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.86 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.83 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.82 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.81 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.78 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.78 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.76 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.74 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.73 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.72 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.72 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.7 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.7 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.68 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.68 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.66 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.63 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.63 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.62 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.6 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.58 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.58 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.57 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.55 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.53 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.53 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.53 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.5 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.5 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.5 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.49 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.49 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.49 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.48 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.48 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.48 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.47 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.47 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.43 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.42 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.4 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.38 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.37 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.36 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.36 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.36 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.35 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.35 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.34 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.34 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.34 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.33 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.33 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.33 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.32 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.32 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.3 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.29 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.29 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.29 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.27 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.26 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.24 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.22 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.19 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.17 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.15 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.14 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.14 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.13 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.1 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.1 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.1 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.08 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.08 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.07 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.07 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.05 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.05 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.05 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.04 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.04 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.03 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.02 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.02 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.01 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.99 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.98 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.96 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.95 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.94 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.93 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.9 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.89 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.87 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.83 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.83 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.83 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.82 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.82 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.81 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.5 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.45 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.45 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.41 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.39 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.38 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.37 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.33 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.23 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.13 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.11 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.1 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.98 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.94 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.86 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.78 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.73 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.63 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.54 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.5 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.46 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.4 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.39 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.11 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.98 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.74 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.64 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.56 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.24 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 95.11 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.0 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 93.92 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.28 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.99 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 92.87 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 92.64 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 92.08 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 91.91 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 91.77 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 91.71 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 91.55 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 88.91 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 88.53 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 88.52 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 88.26 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 86.58 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 85.98 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 82.27 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 82.06 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 81.85 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 81.1 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 80.51 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 80.15 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-43 Score=398.05 Aligned_cols=530 Identities=8% Similarity=-0.028 Sum_probs=373.5
Q ss_pred HHhcccChHHHHHHHHHHHHhCCCCChhHhhHHhcccccccCChHHHHHHhccCCCCCcchHHHHHHHHHcCCCchHHHH
Q 005000 22 PIETCESMHQLKQIHSQTIKLGLLTNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVL 101 (720)
Q Consensus 22 ~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~y~~~g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~A~~ 101 (720)
+...|..+....++|......++..++. ..+... +.++|.+..++..|+.++.+++..|+.++..|.+.|++++|+.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 105 (597)
T 2xpi_A 29 AYMTPPSMGALNANNSNSQLSTLTISPM--TYLANN-TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAF 105 (597)
T ss_dssp ----------------CTTSCGGGGCGG--GGGC----------------------CHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCCccHHHHhhccccccccceeechh--hhhccc-ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHH
Confidence 3334444555555665554444433322 233445 6788999999999999999999999999999999999999999
Q ss_pred HHHHhHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC--
Q 005000 102 IYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKD-- 179 (720)
Q Consensus 102 l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-- 179 (720)
+|++|.. ..||..++..+..+|.+.|++++|.++++.+... ++++.+++.++.+|.++|++++|.++|+++...
T Consensus 106 ~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 181 (597)
T 2xpi_A 106 VGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRK 181 (597)
T ss_dssp HHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC-
T ss_pred HHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccc
Confidence 9999986 4578899999999999999999999999988653 678999999999999999999999999964433
Q ss_pred -----------------CeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH-hhHHHHHHHHhcCCCchH--HHHH-
Q 005000 180 -----------------DVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTS-VTIVLVLSACAKLKDLDV--GKRA- 238 (720)
Q Consensus 180 -----------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~--a~~~- 238 (720)
+..+|+.++.+|.+.|++++|+++|++|.+.+ |+. ..+..+...+...+..+. +..+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 259 (597)
T 2xpi_A 182 DEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLN 259 (597)
T ss_dssp ---------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSC
T ss_pred cccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcC
Confidence 37899999999999999999999999998864 443 334444333322222111 1111
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCchhHHHHHHHHHhcCCHHHHHHHHhhCC---CCCc
Q 005000 239 HRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKN--KDVISWTAIVTGYINRGQVDMARQYFDQMP---ERDY 313 (720)
Q Consensus 239 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~ 313 (720)
+..+...+..+...+++.++.+|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.|++++|.++|+++. ..+.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 339 (597)
T 2xpi_A 260 YSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNL 339 (597)
T ss_dssp THHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCC
T ss_pred CcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccH
Confidence 34444444455566777778889999999999999999887 788888888888888888888888888875 2367
Q ss_pred cchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhh
Q 005000 314 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMY 393 (720)
Q Consensus 314 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y 393 (720)
.+|+.++.+|.+.|++++|..+|+++.+.. +.+..++..+...+.+.|+++.|..++..+.+.. +.+..+++.++.+|
T Consensus 340 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 417 (597)
T 2xpi_A 340 DVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSF 417 (597)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 788888888888888888888888887543 4466777777777778888888888777777643 34566777777778
Q ss_pred hhcCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHH
Q 005000 394 CKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGRE 470 (720)
Q Consensus 394 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 470 (720)
.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.. +.+..+|..++..+.+.|++++|.+
T Consensus 418 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 496 (597)
T 2xpi_A 418 AIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAIN 496 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHH
Confidence 888888888877777642 366777777777777788888888887777653 3356677777777777788888887
Q ss_pred HHHHHHHHc---CCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005000 471 YFADMTIQH---GIEPN--EAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQI 543 (720)
Q Consensus 471 ~~~~m~~~~---~~~p~--~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 543 (720)
+|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+.++++ ...| +..+|..+..+|...|++++|...++++
T Consensus 497 ~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 576 (597)
T 2xpi_A 497 HFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHES 576 (597)
T ss_dssp HHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 777775322 55666 677777777777788888887777776 3334 6777777777777778888888888877
Q ss_pred HhcCCCCcchHHHHHhHhhh
Q 005000 544 LELDPDNEAVYVLLCNIYAA 563 (720)
Q Consensus 544 ~~~~p~~~~~~~~l~~~~~~ 563 (720)
++++|+++..+..|+++|..
T Consensus 577 l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 577 LAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHCTTCHHHHHHHHHTTC-
T ss_pred HhcCCCChHHHHHHHHHHhc
Confidence 77777777777777777653
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=357.75 Aligned_cols=478 Identities=12% Similarity=0.066 Sum_probs=397.6
Q ss_pred HcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHH
Q 005000 91 SRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMAR 170 (720)
Q Consensus 91 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 170 (720)
...|....+...+..+. .++...|+.++..+.+.|++++|..+++.+.+. .|+..++..++.+|.+.|++++|.
T Consensus 64 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHH
Confidence 44555555666655542 367888999999999999999999999999864 467789999999999999999999
Q ss_pred HHHhcC--CCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHC---------------CCCCCHhhHHHHHHHHhcCCCch
Q 005000 171 GIFDVS--YKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK---------------GVLPTSVTIVLVLSACAKLKDLD 233 (720)
Q Consensus 171 ~~f~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---------------g~~p~~~t~~~ll~~~~~~~~~~ 233 (720)
.+|+.+ ..++..+|+.++.+|.+.|++++|+++|+++... |..++..+|..++.++.+.|+++
T Consensus 138 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 138 CLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence 999988 4578999999999999999999999999953221 23445788999999999999999
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHH---HhhcCCC----CchhHHHHHHHHHhcCCHHHHHHHHh
Q 005000 234 VGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEI---FGNIKNK----DVISWTAIVTGYINRGQVDMARQYFD 306 (720)
Q Consensus 234 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~---~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~f~ 306 (720)
+|.++++.+.+.+.. +...+..+...+...+..+.+... |..+... ....|+.++..|.+.|++++|.++|+
T Consensus 218 ~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 218 RAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 999999999887532 455566666555444333222111 2222222 23456667888999999999999999
Q ss_pred hCCC--CCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChh
Q 005000 307 QMPE--RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIF 384 (720)
Q Consensus 307 ~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~ 384 (720)
++.+ ++..+|+.++.+|.+.|++++|+.+|+++.+.+ +.+..++..++.++.+.|+.+.|..++..+.+.. +.+..
T Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 374 (597)
T 2xpi_A 297 SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAV 374 (597)
T ss_dssp TSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHH
T ss_pred HhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHH
Confidence 9987 789999999999999999999999999999865 4477789999999999999999999999998654 56788
Q ss_pred HhhHHhhhhhhcCCHHHHHHHHHhcc---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 005000 385 VGNALIDMYCKCGDVEKAQRVFREML---RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTH 461 (720)
Q Consensus 385 ~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 461 (720)
+++.++.+|.++|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|++|.+.+ +++..++..++.+|.+
T Consensus 375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 453 (597)
T 2xpi_A 375 TWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQ 453 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 99999999999999999999999885 3478899999999999999999999999999864 4477899999999999
Q ss_pred cCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCC
Q 005000 462 TGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-------PMKPN--SIVWGALLGACRVHRD 532 (720)
Q Consensus 462 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-------~~~p~--~~~~~~ll~~~~~~g~ 532 (720)
.|++++|.++|+++.+. .+.+..+|+.++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|...|+
T Consensus 454 ~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 531 (597)
T 2xpi_A 454 LGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM 531 (597)
T ss_dssp HTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC
Confidence 99999999999999743 2446889999999999999999999999988 44787 7899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 533 AEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 533 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
+++|...++++++.+|+++.+|..++.+|.+.|+|++|.+.++++.+.
T Consensus 532 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 532 YDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999998763
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=8.5e-25 Score=231.26 Aligned_cols=369 Identities=12% Similarity=0.120 Sum_probs=277.9
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCC-HhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCH
Q 005000 189 SGYKRVKQFDETRKLFGEMERKGVLPT-SVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEM 267 (720)
Q Consensus 189 ~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 267 (720)
..+.+.|++++|++.+.++.+. .|+ ...+..+...+...|+++.|...+...++.. +.+...+..+...|.+.|++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 3445566666666666665543 233 2334444444556666666666666666543 33556666666667777777
Q ss_pred HHHHHHHhhcCC--C-CchhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CccchHHHHHHHHhcCChhHHHHHHHHHHH
Q 005000 268 GFALEIFGNIKN--K-DVISWTAIVTGYINRGQVDMARQYFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFREMQT 341 (720)
Q Consensus 268 ~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 341 (720)
++|...|+++.. | +..+|..+...+.+.|++++|.+.|+++.+ | +...+..+...+...|++++|++.|+++..
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 777766666542 2 344566666667777777777766666542 2 344567777788888888888888888877
Q ss_pred CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhcc---CCCHHHHH
Q 005000 342 SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML---RKDKFTWT 418 (720)
Q Consensus 342 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~ 418 (720)
.. +.+..++..+...+...|+++.|...+..+.+.+ +.+...+..+...+.+.|++++|...|++.. ..+..+|.
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 241 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHH
Confidence 53 3346777778888888888888888888887765 4456778888899999999999999998774 33678899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 005000 419 AMIVGLAINGHGDKSLDMFSQMLRASIIP-DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR 497 (720)
Q Consensus 419 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 497 (720)
.+...|...|++++|++.|+++.+. .| +..++..+..++...|++++|.+.|+++.+. .+.+...+..+...|.+
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHH
Confidence 9999999999999999999999985 34 4568888999999999999999999998743 35578889999999999
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCC
Q 005000 498 AGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNR 566 (720)
Q Consensus 498 ~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 566 (720)
.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++++|+++.+|..++.++...|+
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999987 4555 578899999999999999999999999999999999999999998887764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=9.4e-27 Score=251.05 Aligned_cols=184 Identities=15% Similarity=0.203 Sum_probs=175.0
Q ss_pred cchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---------cHHHHHHHHHHHHHcCCCCChh
Q 005000 314 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG---------ALELGEWVKTYIDKNKVKNDIF 384 (720)
Q Consensus 314 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~---------~~~~a~~i~~~~~~~~~~~~~~ 384 (720)
..++.+|.+|++.|+.++|+++|++|.+.|++||..||+++|.+|++.+ .++.|.+++..|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 3588899999999999999999999999999999999999999998654 4789999999999999999999
Q ss_pred HhhHHhhhhhhcCCHHHHHHHHHhcc----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 005000 385 VGNALIDMYCKCGDVEKAQRVFREML----RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACT 460 (720)
Q Consensus 385 ~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 460 (720)
+|++||.+|++.|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||++|+.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999995 57999999999999999999999999999999999999999999999999
Q ss_pred hcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 005000 461 HTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRA 498 (720)
Q Consensus 461 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 498 (720)
+.|++++|.++|++|. +.+..|+..+|+.+++.|...
T Consensus 187 ~~g~~d~A~~ll~~Mr-~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLR-DLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHH-HHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHH-HhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999997 789999999999999998764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-27 Score=254.52 Aligned_cols=184 Identities=11% Similarity=0.104 Sum_probs=171.5
Q ss_pred chHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCC---------hHHHHHHHHHHHHhCCCCChh
Q 005000 81 CLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIA---------VEFGKELHCHVLKFGFDSSVF 151 (720)
Q Consensus 81 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~g~~~~~~ 151 (720)
..++.+|.+|++.|++++|+++|++|.+.|++||.+||+++|.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45888999999999999999999999999999999999999999986553 688999999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCC----CCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHh
Q 005000 152 VQNALISTYCLCGEVDMARGIFDVSY----KDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACA 227 (720)
Q Consensus 152 ~~~~li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 227 (720)
+||+||++|++.|++++|.++|++|. .||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999998875 47999999999999999999999999999999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Q 005000 228 KLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAAC 264 (720)
Q Consensus 228 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 264 (720)
+.|+.++|.+++++|.+.|..|+..+++.++..|...
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999998764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=9.6e-24 Score=223.16 Aligned_cols=349 Identities=12% Similarity=0.066 Sum_probs=304.3
Q ss_pred HHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCchhHHHHHHHHHhcCCHH
Q 005000 223 LSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKN---KDVISWTAIVTGYINRGQVD 299 (720)
Q Consensus 223 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 299 (720)
...+.+.|++++|.+.+..+.+.. +.+...+..+...+.+.|++++|...++.... .+..+|..+...|.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 345667899999999999998874 33566777888999999999999999987654 46678999999999999999
Q ss_pred HHHHHHhhCCC--C-CccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 005000 300 MARQYFDQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPD-EFTIVSILTACANLGALELGEWVKTYID 375 (720)
Q Consensus 300 ~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~i~~~~~ 375 (720)
+|.+.|+++.. | +..+|..+...+.+.|++++|+..|+++.+. .|+ ...+..+...+...|+++.|...+..+.
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999998753 3 4567999999999999999999999999875 344 4456667777888999999999999998
Q ss_pred HcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHH
Q 005000 376 KNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD-EVT 451 (720)
Q Consensus 376 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t 451 (720)
+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++.... .|+ ..+
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~ 239 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVV 239 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHH
Confidence 864 45678899999999999999999999999853 35778999999999999999999999999885 454 578
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHh
Q 005000 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PM-KPNSIVWGALLGACRV 529 (720)
Q Consensus 452 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~-~p~~~~~~~ll~~~~~ 529 (720)
+..+..++...|++++|.+.|+++.+. -+.+...|..+...|.+.|++++|.+.++++ .. +++..+|..+...+..
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence 889999999999999999999998732 2335778999999999999999999999998 33 3478899999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 530 HRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 530 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
.|++++|...++++++..|+++.++..++.+|.+.|++++|.+.++++.+
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999875
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.5e-22 Score=216.74 Aligned_cols=446 Identities=12% Similarity=-0.030 Sum_probs=276.8
Q ss_pred chHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 005000 81 CLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTY 160 (720)
Q Consensus 81 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 160 (720)
..|..+...+.+.|++++|+..|+++.+.+ ||..++..+..++...|+++.|.+.++.+++.. +.+...+..+..+|
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 346666777888888888888888888754 677788888888888888888888888888765 34556777788888
Q ss_pred HhcCChHHHHHHHhcCCC---CCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHH
Q 005000 161 CLCGEVDMARGIFDVSYK---DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKR 237 (720)
Q Consensus 161 ~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 237 (720)
.+.|++++|...|+.+.. .+......++..+........+.+.+..+...+..|+...+..-...............
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 888888888888775432 23334444444444433333333333333322222222211111100001111111111
Q ss_pred HHHHHHHcCC---------CCChHHHHHHHHHHHh---cCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 005000 238 AHRYVKECKI---------VPNLILENALTDMYAA---CGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYF 305 (720)
Q Consensus 238 ~~~~~~~~g~---------~~~~~~~~~li~~y~~---~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f 305 (720)
+...+..... +.+...+..+...+.. .|++++|...|+++.. .+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~------------------------~~ 219 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAAR------------------------LF 219 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHH------------------------HH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHH------------------------Hh
Confidence 1111111100 1112222222222222 4555555555443221 00
Q ss_pred hhCC----------CCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 005000 306 DQMP----------ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYID 375 (720)
Q Consensus 306 ~~~~----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~ 375 (720)
+... ..+..+|..+...+...|++++|+..|+++.+.. |+...+..+...+...|+++.|...+..+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 297 (514)
T 2gw1_A 220 EEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKAL 297 (514)
T ss_dssp HHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHH
T ss_pred hhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 0001 0124567778888888888888888888887754 336667777777778888888888887777
Q ss_pred HcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhcc---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHH
Q 005000 376 KNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML---RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY 452 (720)
Q Consensus 376 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 452 (720)
+.. +.+..++..+...|.+.|++++|...|++.. ..+...|..+...+...|++++|+..|+++.+.. +.+..++
T Consensus 298 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 375 (514)
T 2gw1_A 298 KLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVP 375 (514)
T ss_dssp TTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHH
T ss_pred hcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHH
Confidence 654 3456677778888888888888888888764 2356677788888888888888888888877742 2244677
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHcCCCcc----HHHHHHHHHHHHh---cCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 005000 453 VGVLSACTHTGMVDEGREYFADMTIQHGIEPN----EAHYGCMVDLLGR---AGHLNEALEVIKNM-PMKP-NSIVWGAL 523 (720)
Q Consensus 453 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~---~g~~~eA~~~~~~~-~~~p-~~~~~~~l 523 (720)
..+...+...|++++|...++.+.....-.++ ...+..+...|.+ .|++++|.+.++++ ...| +..+|..+
T Consensus 376 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 455 (514)
T 2gw1_A 376 NFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGL 455 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 77778888888888888888877643322222 3477778888888 88888888888876 3334 56777888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 005000 524 LGACRVHRDAEMAEMAAKQILELDPDNEAVYVLL 557 (720)
Q Consensus 524 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 557 (720)
...+...|++++|...+++++++.|+++..+..+
T Consensus 456 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 456 AQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 8888888888888888888888888876665554
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-21 Score=214.92 Aligned_cols=422 Identities=10% Similarity=-0.030 Sum_probs=295.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCC--CCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcC
Q 005000 152 VQNALISTYCLCGEVDMARGIFDVSYK--DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKL 229 (720)
Q Consensus 152 ~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 229 (720)
.+..+...|.+.|++++|...|+++.. ||..+|..+...|.+.|++++|+..|+++.+.+ +.+..++..+..++...
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHH
Confidence 444555666667777777777765532 566666666777777777777777777666543 22345666666666677
Q ss_pred CCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCC----CCchhHHHH---HHHHHhcCCHHHHH
Q 005000 230 KDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKN----KDVISWTAI---VTGYINRGQVDMAR 302 (720)
Q Consensus 230 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~l---i~~~~~~g~~~~A~ 302 (720)
|++++|...+..+.+.+. ++......++..+.+......+.+.+..+.. ++...++.. ............+.
T Consensus 87 g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred hhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 777777777776666543 2333333444444333333333332221111 000000000 00000111111111
Q ss_pred HHHhhCCC---------C-CccchHHHHHHHHh---cCChhHHHHHHHHHHH-----CCCCC--------CHHHHHHHHH
Q 005000 303 QYFDQMPE---------R-DYVLWTAMIDGYLR---VNRFREALTLFREMQT-----SNIRP--------DEFTIVSILT 356 (720)
Q Consensus 303 ~~f~~~~~---------~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~p--------~~~t~~~ll~ 356 (720)
..+..... + +...|......+.. .|++++|+..|+++.+ ..-.| +..++..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 22221111 1 13344445555554 8999999999999987 32122 3456777778
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHH
Q 005000 357 ACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKS 433 (720)
Q Consensus 357 ~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 433 (720)
.+...|+++.|...+..+.+.... ..++..+...|.+.|++++|...|+.+.. .+...|..+...+...|++++|
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 323 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQA 323 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 889999999999999999987644 88889999999999999999999998854 3677899999999999999999
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC--
Q 005000 434 LDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-- 511 (720)
Q Consensus 434 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-- 511 (720)
+..|+++.... +.+..++..+...+...|++++|..+++.+.+.. +.+...+..+...|.+.|++++|.+.++++
T Consensus 324 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 324 GKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400 (514)
T ss_dssp HHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999864 2345788888999999999999999999987432 335678899999999999999999999887
Q ss_pred --CCCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 512 --PMKPN----SIVWGALLGACRV---HRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 512 --~~~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
+..|+ ..+|..+...+.. .|++++|...++++++..|+++.++..++.+|.+.|++++|.+.++++.+.
T Consensus 401 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 401 LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 22222 4489999999999 999999999999999999999999999999999999999999999998764
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=4.7e-21 Score=206.72 Aligned_cols=322 Identities=13% Similarity=0.075 Sum_probs=242.8
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCccchHHHHHHH
Q 005000 250 NLILENALTDMYAACGEMGFALEIFGNIKN---KDVISWTAIVTGYINRGQVDMARQYFDQMPE---RDYVLWTAMIDGY 323 (720)
Q Consensus 250 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~ 323 (720)
+...+..+...|.+.|++++|..+|+++.. .+..+|..+...|.+.|++++|...|+++.+ .+..+|..++..|
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 344555555555556666666665555432 2445555566666666666666666655432 2455677777778
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCH----HHHHHH------------HHHHhccCcHHHHHHHHHHHHHcCCCCChhHhh
Q 005000 324 LRVNRFREALTLFREMQTSNIRPDE----FTIVSI------------LTACANLGALELGEWVKTYIDKNKVKNDIFVGN 387 (720)
Q Consensus 324 ~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~l------------l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~ 387 (720)
.+.|++++|+..|+++.+. .|+. ..+..+ ...+...|+++.|...+..+.+.. +.+..++.
T Consensus 105 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 181 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRE 181 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 8888888888888877764 3433 333333 334777889999999998888764 45778899
Q ss_pred HHhhhhhhcCCHHHHHHHHHhcc---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChH-HHHHH--------
Q 005000 388 ALIDMYCKCGDVEKAQRVFREML---RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV-TYVGV-------- 455 (720)
Q Consensus 388 ~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~l-------- 455 (720)
.+..+|.+.|++++|.+.|+++. ..+..+|..++..|...|++++|+..|+++... .|+.. .+..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHH
Confidence 99999999999999999999885 347889999999999999999999999999874 55554 33333
Q ss_pred ----HHHHHhcCChhhHHHHHHHHHHHcCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005000 456 ----LSACTHTGMVDEGREYFADMTIQHGIEPN--EAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGAC 527 (720)
Q Consensus 456 ----l~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~ 527 (720)
..+|.+.|++++|..+|+++.+...-.|. ..+|..++.+|.+.|++++|.+.++++ ...| +..+|..+..+|
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 339 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAY 339 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 78899999999999999999743222122 458899999999999999999999997 4455 689999999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHH------------hHhhhcC-----ChhHHHHHHHH
Q 005000 528 RVHRDAEMAEMAAKQILELDPDNEAVYVLLC------------NIYAACN-----RWDNFRELRQM 576 (720)
Q Consensus 528 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g-----~~~~a~~~~~~ 576 (720)
...|++++|...++++++++|+++..+..++ +.|...| +.+++.+.+++
T Consensus 340 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 340 LIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 9999999999999999999999999999999 6677777 44455555554
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.9e-20 Score=205.44 Aligned_cols=413 Identities=10% Similarity=0.025 Sum_probs=261.9
Q ss_pred HHHHHHHhcCChHHHHHHHhcCC---CCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCC
Q 005000 155 ALISTYCLCGEVDMARGIFDVSY---KDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKD 231 (720)
Q Consensus 155 ~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 231 (720)
.+...|.+.|++++|.+.|++.. ..+..+|..+...|.+.|++++|++.|+++...+ +.+..++..+...+...|+
T Consensus 30 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~ 108 (537)
T 3fp2_A 30 NRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGN 108 (537)
T ss_dssp HHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCC
Confidence 33444444444444444444332 1234444455555555555555555555544432 1233444444445555555
Q ss_pred chHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCC------CchhHHHHHHHHHhcCCHHHHHHHH
Q 005000 232 LDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK------DVISWTAIVTGYINRGQVDMARQYF 305 (720)
Q Consensus 232 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~f 305 (720)
+++|...++ .... .|+ .....+..+...+....|...++.+... ........+..+....+.+.+...+
T Consensus 109 ~~~A~~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (537)
T 3fp2_A 109 FTDAMFDLS-VLSL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSV 183 (537)
T ss_dssp HHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTS
T ss_pred HHHHHHHHH-HHhc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHH
Confidence 555555553 2221 111 1111223333344445566666555432 1222334455555666666666666
Q ss_pred hhCCCCCcc---chHHHHHHHHh--------cCChhHHHHHHHHHHHCCCCCC--------HHHHHHHHHHHhccCcHHH
Q 005000 306 DQMPERDYV---LWTAMIDGYLR--------VNRFREALTLFREMQTSNIRPD--------EFTIVSILTACANLGALEL 366 (720)
Q Consensus 306 ~~~~~~~~~---~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~--------~~t~~~ll~~~~~~~~~~~ 366 (720)
......+.. .+..+...+.. .|++++|+.+|+++.+.. |+ ..++..+...+...|+++.
T Consensus 184 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (537)
T 3fp2_A 184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLD 261 (537)
T ss_dssp CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHH
Confidence 555544433 22233222221 247788888888887643 33 2235555566677788888
Q ss_pred HHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhcc---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 005000 367 GEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML---RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRA 443 (720)
Q Consensus 367 a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 443 (720)
|...+..+.+.. |+..++..+...|.+.|++++|...|+++. ..+..+|..+...+...|++++|++.|+++.+.
T Consensus 262 A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 339 (537)
T 3fp2_A 262 AQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL 339 (537)
T ss_dssp HHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 888888888764 447778888888889999999999988774 346778888889999999999999999998875
Q ss_pred CCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC----CCC----C
Q 005000 444 SIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM----PMK----P 515 (720)
Q Consensus 444 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~----p 515 (720)
. +.+..++..+...+...|++++|..+++++.+. .+.+...+..+...|.+.|++++|.+.++++ +.. .
T Consensus 340 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 416 (537)
T 3fp2_A 340 N-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHV 416 (537)
T ss_dssp C-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSS
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHH
Confidence 3 223467888888889999999999999988743 2345678888899999999999999998886 111 1
Q ss_pred CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 516 NSIVWGALLGACRVH----------RDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 516 ~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
....+..+...+... |++++|...++++++.+|+++.++..++.+|.+.|++++|.+.++++.+.
T Consensus 417 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 417 GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp TTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 223344555667777 99999999999999999999999999999999999999999999988764
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.8e-20 Score=204.44 Aligned_cols=439 Identities=11% Similarity=0.007 Sum_probs=309.8
Q ss_pred cchHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 005000 80 VCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALIST 159 (720)
Q Consensus 80 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 159 (720)
...|..+...+.+.|++++|++.|+++.+.. +.+..++..+..++...|++++|.+.++.+++.. +.+...+..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 3467888889999999999999999998864 3466788888899999999999999999999876 3467788888999
Q ss_pred HHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHC------CCCCCHhhHHHHHHHHhcCCCch
Q 005000 160 YCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK------GVLPTSVTIVLVLSACAKLKDLD 233 (720)
Q Consensus 160 y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~ 233 (720)
|.+.|++++|.+.|+.+ ..+....+..+..+...+...+|+..++++... ...|+...... +....+.+
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS----FFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHH----HHHTSCHH
T ss_pred HHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHH----HHHhcChH
Confidence 99999999999999643 333333344455666666778888888887543 12233332222 22222222
Q ss_pred HHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcC-CHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 005000 234 VGKRAHRYVKECKIVPN-LILENALTDMYAACG-EMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER 311 (720)
Q Consensus 234 ~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g-~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~ 311 (720)
.+...+..... ..+. ......+...+...+ ++ ....|++++|..+|+.+.+.
T Consensus 178 ~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~------------------------~~a~~~~~~A~~~~~~~l~~ 231 (537)
T 3fp2_A 178 LEVSSVNTSSN--YDTAYALLSDALQRLYSATDEGY------------------------LVANDLLTKSTDMYHSLLSA 231 (537)
T ss_dssp HHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHH------------------------HHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhhccc--cccHHHHHHHHHHHHHHhhhhhh------------------------HHHHHHHHHHHHHHHHHHHH
Confidence 22111111000 0111 112222222222111 00 00113455555555555433
Q ss_pred Cc----------cchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCC
Q 005000 312 DY----------VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKN 381 (720)
Q Consensus 312 ~~----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~ 381 (720)
++ .+|..+...+...|++++|+..|+++... .|+...+..+...+...|+++.|...+..+.+.. +.
T Consensus 232 ~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 308 (537)
T 3fp2_A 232 NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PE 308 (537)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TT
T ss_pred CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CC
Confidence 22 24666777888999999999999999875 4667788888888999999999999999988865 45
Q ss_pred ChhHhhHHhhhhhhcCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 005000 382 DIFVGNALIDMYCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSA 458 (720)
Q Consensus 382 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 458 (720)
+..++..+...|.+.|++++|...|++..+ .+...|..+...+...|++++|++.|+++.+.. +.+...+..+...
T Consensus 309 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 387 (537)
T 3fp2_A 309 YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEI 387 (537)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 678899999999999999999999998853 367789999999999999999999999999863 3345688888999
Q ss_pred HHhcCChhhHHHHHHHHHHHcCCCc----cHHHHHHHHHHHHhc----------CCHHHHHHHHHhC-CCCC-CHHHHHH
Q 005000 459 CTHTGMVDEGREYFADMTIQHGIEP----NEAHYGCMVDLLGRA----------GHLNEALEVIKNM-PMKP-NSIVWGA 522 (720)
Q Consensus 459 ~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~----------g~~~eA~~~~~~~-~~~p-~~~~~~~ 522 (720)
+...|++++|...|+.+.+...-.+ ....+..+...|.+. |++++|...++++ ...| +..+|..
T Consensus 388 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 467 (537)
T 3fp2_A 388 LTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIG 467 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9999999999999999864321111 223345566778888 9999999999987 3444 6788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 005000 523 LLGACRVHRDAEMAEMAAKQILELDPDNEAVYV 555 (720)
Q Consensus 523 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 555 (720)
+...+...|++++|...+++++++.|+++....
T Consensus 468 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 468 LAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999999999999999999999999998766543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-19 Score=195.60 Aligned_cols=361 Identities=9% Similarity=0.015 Sum_probs=215.0
Q ss_pred eeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 005000 182 VTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMY 261 (720)
Q Consensus 182 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 261 (720)
..|..+...|.+.|++++|+.+|+++.... +.+..++..+...+...|+++.|...+..+++.+ +.+..++..+..+|
T Consensus 27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 27 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHH
Confidence 345555555555555555555555555431 2234455555555555555555555555555543 22455566666666
Q ss_pred HhcCCHHHHHHHHhhcCCCCc------hhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccchHHHHHHHHhcCChhHHHHH
Q 005000 262 AACGEMGFALEIFGNIKNKDV------ISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTL 335 (720)
Q Consensus 262 ~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 335 (720)
.+.|++++|...|+++...++ ..|..++..+... .+..+...+.+.|++++|+..
T Consensus 105 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~A~~~ 165 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-------------------RLRSQALNAFGSGDYTAAIAF 165 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-------------------HHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666666554222 3444443332111 112223334455555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccC--C-
Q 005000 336 FREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR--K- 412 (720)
Q Consensus 336 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~- 412 (720)
|+++.+.. +.+...+..+..++...|+++.|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.. |
T Consensus 166 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 243 (450)
T 2y4t_A 166 LDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 243 (450)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 55555432 2344455555555555555555555555554432 33455666666666667777777766666632 2
Q ss_pred CHHHHHHH------------HHHHHHcCChHHHHHHHHHHHHCCCCCC-----hHHHHHHHHHHHhcCChhhHHHHHHHH
Q 005000 413 DKFTWTAM------------IVGLAINGHGDKSLDMFSQMLRASIIPD-----EVTYVGVLSACTHTGMVDEGREYFADM 475 (720)
Q Consensus 413 ~~~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~m 475 (720)
+...|..+ ...+...|++++|+..|+++.+. .|+ ...+..+..++.+.|++++|...++.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 321 (450)
T 2y4t_A 244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEV 321 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33344433 77788888888999988888874 454 336777788888889999999988887
Q ss_pred HHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH------------HHhcC-----CHHHH
Q 005000 476 TIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGA------------CRVHR-----DAEMA 536 (720)
Q Consensus 476 ~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~------------~~~~g-----~~~~a 536 (720)
.+. .+.+...|..+..+|.+.|++++|.+.++++ ...| +...+..+..+ |...| +.+++
T Consensus 322 ~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~ 399 (450)
T 2y4t_A 322 LQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEI 399 (450)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHH
T ss_pred HHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHH
Confidence 632 2335788888888899999999999988887 5666 45566655533 33333 56777
Q ss_pred HHHHHH-HHhcCCCCcc----------hHHHHHhHhhhcCChhH
Q 005000 537 EMAAKQ-ILELDPDNEA----------VYVLLCNIYAACNRWDN 569 (720)
Q Consensus 537 ~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~ 569 (720)
.+.+++ +++..|++.. .+..+..+|...|+.++
T Consensus 400 ~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 400 IKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp HHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 888886 7788887432 34455555555555443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-17 Score=171.50 Aligned_cols=303 Identities=12% Similarity=0.083 Sum_probs=219.0
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCccchHHHHHHH
Q 005000 250 NLILENALTDMYAACGEMGFALEIFGNIKN---KDVISWTAIVTGYINRGQVDMARQYFDQMPE---RDYVLWTAMIDGY 323 (720)
Q Consensus 250 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~ 323 (720)
++..+..+...+.+.|++++|...|+++.+ .+..+|..+...+...|++++|...|+++.+ .+...|..+...|
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 455677778888888888888888887653 3456777777778888888888888776543 2456677777777
Q ss_pred HhcCChhHHHHHHHHHHHCCCCC---CHH-HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCH
Q 005000 324 LRVNRFREALTLFREMQTSNIRP---DEF-TIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDV 399 (720)
Q Consensus 324 ~~~g~~~~A~~~~~~m~~~g~~p---~~~-t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 399 (720)
...|++++|+..|+++.+. .| +.. .+..+... .. ...+..+...|...|++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~-------~~----------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKA-------DE----------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHTTCH
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHccCH
Confidence 8888888888888777764 34 222 11111100 00 01123345677788888
Q ss_pred HHHHHHHHhcc---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 005000 400 EKAQRVFREML---RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMT 476 (720)
Q Consensus 400 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 476 (720)
++|.+.|+++. ..+...|..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...|+.+.
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888888774 3366778888888888888888888888888753 3345677778888888888888888888876
Q ss_pred HHcCCCccHHHHH------------HHHHHHHhcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCCHHHHHH
Q 005000 477 IQHGIEPNEAHYG------------CMVDLLGRAGHLNEALEVIKNM-PMKPN-S----IVWGALLGACRVHRDAEMAEM 538 (720)
Q Consensus 477 ~~~~~~p~~~~~~------------~li~~~~~~g~~~eA~~~~~~~-~~~p~-~----~~~~~ll~~~~~~g~~~~a~~ 538 (720)
+... .+...+. .+...+.+.|++++|.+.++++ ...|+ . ..|..+...+...|++++|..
T Consensus 216 ~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KLDQ--DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HHCT--TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhCc--cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 4321 1222222 3366788999999999999887 33343 3 234557788899999999999
Q ss_pred HHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 539 AAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 539 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
.++++++.+|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999988763
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.2e-17 Score=171.57 Aligned_cols=324 Identities=10% Similarity=0.010 Sum_probs=238.5
Q ss_pred CHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCchhHHHHHHH
Q 005000 215 TSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKN---KDVISWTAIVTG 291 (720)
Q Consensus 215 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 291 (720)
|...+..+...+...|++++|...+..+++.. +.+..++..+...|...|++++|...|+++.+ .+...|..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 34567778888999999999999999999874 34678899999999999999999999998764 366789999999
Q ss_pred HHhcCCHHHHHHHHhhCCCCCc------cchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH
Q 005000 292 YINRGQVDMARQYFDQMPERDY------VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALE 365 (720)
Q Consensus 292 ~~~~g~~~~A~~~f~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 365 (720)
+.+.|++++|...|+...+.++ ..+..+...+. ...+......+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 9999999999999998866544 23333311000 001112223334444555
Q ss_pred HHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005000 366 LGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLR 442 (720)
Q Consensus 366 ~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 442 (720)
.|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|...|++..+
T Consensus 138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555554444432 33455666777777777888888887777643 3567778888888888888888888888776
Q ss_pred CCCCCCh-HHHH------------HHHHHHHhcCChhhHHHHHHHHHHHcCCCccH--HHHHHHHHHHHhcCCHHHHHHH
Q 005000 443 ASIIPDE-VTYV------------GVLSACTHTGMVDEGREYFADMTIQHGIEPNE--AHYGCMVDLLGRAGHLNEALEV 507 (720)
Q Consensus 443 ~g~~p~~-~t~~------------~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~g~~~eA~~~ 507 (720)
. .|+. ..+. .+...+...|++++|...++.+.+...-.|.. ..+..+...|.+.|++++|.+.
T Consensus 217 ~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 294 (359)
T 3ieg_A 217 L--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRI 294 (359)
T ss_dssp H--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred h--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 4 3333 2222 23566888999999999999987433221211 3355688899999999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcC
Q 005000 508 IKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACN 565 (720)
Q Consensus 508 ~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 565 (720)
+++. ...| +..+|..+...+...|++++|...++++++++|+++.....+..++...+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 295 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 9987 3445 78899999999999999999999999999999999988888877765443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-18 Score=178.81 Aligned_cols=284 Identities=11% Similarity=0.076 Sum_probs=96.1
Q ss_pred ccCChHHHHHHhccCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHH
Q 005000 61 EKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCH 140 (720)
Q Consensus 61 ~~g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 140 (720)
+.|++++|.+.+++++.|+ +|..|..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|...+..
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5789999999999997775 899999999999999999999975 26888999999999999999999998888
Q ss_pred HHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHH
Q 005000 141 VLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIV 220 (720)
Q Consensus 141 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 220 (720)
..+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|..+|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 8774 45688899999999999999999988864 66778999988899999999998888865 2455
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHH
Q 005000 221 LVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDM 300 (720)
Q Consensus 221 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 300 (720)
.+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+ ++.
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~e-------------------------------f~l 195 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKE-------------------------------FRL 195 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTC-------------------------------HHH
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCc-------------------------------HHH
Confidence 5555555555555555555444 144444444455554444 444
Q ss_pred HHHHHhhCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh--ccCcHHHHHHHHHHHHHcC
Q 005000 301 ARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACA--NLGALELGEWVKTYIDKNK 378 (720)
Q Consensus 301 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~~i~~~~~~~~ 378 (720)
|......+. .++.....++..|.+.|++++|+.+++...... +.....|+-+--+++ +.+.+.+..+.+. .+.+
T Consensus 196 A~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~--~~in 271 (449)
T 1b89_A 196 AQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW--SRVN 271 (449)
T ss_dssp HHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS--TTSC
T ss_pred HHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHhc
Confidence 444433332 222223346666666777777777766665433 223333333333333 3333333333332 1112
Q ss_pred CCC------ChhHhhHHhhhhhhcCCHHHHHHHHH
Q 005000 379 VKN------DIFVGNALIDMYCKCGDVEKAQRVFR 407 (720)
Q Consensus 379 ~~~------~~~~~~~li~~y~~~g~~~~A~~~~~ 407 (720)
+++ +...|..++-.|.+.++++.|....-
T Consensus 272 i~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~ 306 (449)
T 1b89_A 272 IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM 306 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 222 35567788888888888888776543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-16 Score=163.53 Aligned_cols=253 Identities=12% Similarity=0.054 Sum_probs=186.1
Q ss_pred ccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHHcCCCCChhHhhHHhh
Q 005000 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG-ALELGEWVKTYIDKNKVKNDIFVGNALID 391 (720)
Q Consensus 313 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 391 (720)
...+..++..+...|++++|+.+++++.+.. +.+...+..+...+...| +++.|...+..+.+.. +.+...+..+..
T Consensus 56 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 133 (330)
T 3hym_B 56 ASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGH 133 (330)
T ss_dssp TTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHH
T ss_pred hhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHH
Confidence 3445556666666677777777776666542 234455555666666666 6677777766666554 334566777888
Q ss_pred hhhhcCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhH
Q 005000 392 MYCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEG 468 (720)
Q Consensus 392 ~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 468 (720)
.|...|++++|...|++..+ .+...|..+...|...|++++|++.|++..+.. +.+...+..+...+...|++++|
T Consensus 134 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 212 (330)
T 3hym_B 134 SFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTA 212 (330)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHH
Confidence 88888888888888887742 245677778888888888888888888888753 33456777888888888999999
Q ss_pred HHHHHHHHHHcC-------CCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 005000 469 REYFADMTIQHG-------IEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMA 539 (720)
Q Consensus 469 ~~~~~~m~~~~~-------~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 539 (720)
...++++..... .+.....+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|...
T Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 292 (330)
T 3hym_B 213 EKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDY 292 (330)
T ss_dssp HHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHH
Confidence 988888764321 1334678888999999999999999998887 3334 677888899999999999999999
Q ss_pred HHHHHhcCCCCcchHHHHHhHh-hhcCChh
Q 005000 540 AKQILELDPDNEAVYVLLCNIY-AACNRWD 568 (720)
Q Consensus 540 ~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 568 (720)
++++++++|+++..+..++.++ ...|+.+
T Consensus 293 ~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 293 FHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999999999999999999888 4556543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-15 Score=164.72 Aligned_cols=366 Identities=11% Similarity=0.002 Sum_probs=255.8
Q ss_pred ChhHHHHHHHHHHh----cCChHHHHHHHhcCCC-CCeeeHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCCHhhH
Q 005000 149 SVFVQNALISTYCL----CGEVDMARGIFDVSYK-DDVVTWNAMFSGYKR----VKQFDETRKLFGEMERKGVLPTSVTI 219 (720)
Q Consensus 149 ~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~ 219 (720)
++.....|...|.. .+++++|...|+...+ .+..++..|...|.. .+++++|++.|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 55666666666666 6667777766664332 345556666666666 666666666666665544 33444
Q ss_pred HHHHHHHhc----CCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHhhcCCCCchhHHHHHHH
Q 005000 220 VLVLSACAK----LKDLDVGKRAHRYVKECKIVPNLILENALTDMYAA----CGEMGFALEIFGNIKNKDVISWTAIVTG 291 (720)
Q Consensus 220 ~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~~~~~~~~~li~~ 291 (720)
..+-..+.. .+++++|...++...+.| +...+..|..+|.. .++.++|.+.|+
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~---------------- 175 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYS---------------- 175 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH----------------
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH----------------
Confidence 444444444 455666666666655543 34444445555544 444555554444
Q ss_pred HHhcCCHHHHHHHHhhCCC-CCccchHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cC
Q 005000 292 YINRGQVDMARQYFDQMPE-RDYVLWTAMIDGYLR----VNRFREALTLFREMQTSNIRPDEFTIVSILTACAN----LG 362 (720)
Q Consensus 292 ~~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~ 362 (720)
+..+ .++.++..+...|.. .+++++|+.+|++..+.| +...+..+...+.. .+
T Consensus 176 ---------------~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~ 237 (490)
T 2xm6_A 176 ---------------KAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQ 237 (490)
T ss_dssp ---------------HHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred ---------------HHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 4322 245566667777776 778888888888877765 44555555555553 67
Q ss_pred cHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhh----cCCHHHHHHHHHhccCC-CHHHHHHHHHHHHHc-----CChHH
Q 005000 363 ALELGEWVKTYIDKNKVKNDIFVGNALIDMYCK----CGDVEKAQRVFREMLRK-DKFTWTAMIVGLAIN-----GHGDK 432 (720)
Q Consensus 363 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~-----g~~~~ 432 (720)
+.+.|...+....+.+ +...+..|..+|.. .++.++|...|+...+. +...+..+...|... ++.++
T Consensus 238 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~ 314 (490)
T 2xm6_A 238 DYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQ 314 (490)
T ss_dssp CHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHH
Confidence 7888888888777754 34566677777777 88999999999988654 677888888888887 89999
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHhcC---ChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cCCHHHHH
Q 005000 433 SLDMFSQMLRASIIPDEVTYVGVLSACTHTG---MVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR----AGHLNEAL 505 (720)
Q Consensus 433 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~eA~ 505 (720)
|+..|++..+.| +...+..+...+...| +.++|.++|++..+ . .++..+..+..+|.. .+++++|.
T Consensus 315 A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~-~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 387 (490)
T 2xm6_A 315 AISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA-K---GEKAAQFNLGNALLQGKGVKKDEQQAA 387 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 999999999875 4456666777777656 78999999998863 2 467788889999998 89999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC---CcchHHHHHhHhhhc
Q 005000 506 EVIKNMPMKPNSIVWGALLGACRV----HRDAEMAEMAAKQILELDPD---NEAVYVLLCNIYAAC 564 (720)
Q Consensus 506 ~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~ 564 (720)
+.+++.-...++..+..|...+.. .+++++|...++++.+.+|+ ++.....|+.++...
T Consensus 388 ~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~~ 453 (490)
T 2xm6_A 388 IWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQ 453 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHhH
Confidence 999987333478888899999888 89999999999999999854 777888888877653
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-17 Score=172.51 Aligned_cols=278 Identities=13% Similarity=0.018 Sum_probs=205.4
Q ss_pred cCCHHHHHH-HHhhCCCC-------CccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH
Q 005000 295 RGQVDMARQ-YFDQMPER-------DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALEL 366 (720)
Q Consensus 295 ~g~~~~A~~-~f~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 366 (720)
.|++++|.. .|++.... +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+++.
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 345555555 55533221 24456677777777777777777777777653 3455666667777777777777
Q ss_pred HHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCC---CHHHHHH---------------HHHHHHHcC
Q 005000 367 GEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK---DKFTWTA---------------MIVGLAING 428 (720)
Q Consensus 367 a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~---------------li~~~~~~g 428 (720)
|...+..+.+.. +.+..++..+...|.+.|++++|...|+++... +...+.. .+..+...|
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 777777776654 445667777777777778888877777776432 1112211 133334889
Q ss_pred ChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 005000 429 HGDKSLDMFSQMLRASIIP-DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEV 507 (720)
Q Consensus 429 ~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~ 507 (720)
++++|+..|+++.+..... +..++..+...+...|++++|...|+++... .+.+...+..+...|.+.|++++|.+.
T Consensus 196 ~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999998853221 4678888999999999999999999998743 234578899999999999999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------cchHHHHHhHhhhcCChhHHHHHH
Q 005000 508 IKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDN-----------EAVYVLLCNIYAACNRWDNFRELR 574 (720)
Q Consensus 508 ~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a~~~~ 574 (720)
++++ ...| +..+|..+...+...|++++|...+++++++.|++ ..++..++.+|...|++++|..++
T Consensus 274 ~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 353 (368)
T 1fch_A 274 YRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAAD 353 (368)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhH
Confidence 9987 3445 67899999999999999999999999999998887 789999999999999999999987
Q ss_pred HH
Q 005000 575 QM 576 (720)
Q Consensus 575 ~~ 576 (720)
++
T Consensus 354 ~~ 355 (368)
T 1fch_A 354 AR 355 (368)
T ss_dssp TT
T ss_pred HH
Confidence 63
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3.8e-14 Score=161.57 Aligned_cols=392 Identities=9% Similarity=0.065 Sum_probs=288.9
Q ss_pred HHHHHHHHhCC--CCChhHHHHHHHHHHhcCChHHHHHHHhcCCC-C-----CeeeHHHHHHHHHhCCChhHHHHHHHHH
Q 005000 136 ELHCHVLKFGF--DSSVFVQNALISTYCLCGEVDMARGIFDVSYK-D-----DVVTWNAMFSGYKRVKQFDETRKLFGEM 207 (720)
Q Consensus 136 ~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m 207 (720)
++.++.....+ ..++.--...+..|...|...+|.++++++.- + +...-|.++....+. +..+..++..+.
T Consensus 969 ~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kL 1047 (1630)
T 1xi4_A 969 PLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRL 1047 (1630)
T ss_pred HHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHh
Confidence 44444443332 22333345667778888888888888887652 2 224455566666666 445555555554
Q ss_pred HHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHH
Q 005000 208 ERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTA 287 (720)
Q Consensus 208 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~ 287 (720)
.. .....+...|...|.+++|..+++... -.....+.+ +-..+++++|.++.++.. +..+|..
T Consensus 1048 d~-------~d~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsq 1110 (1630)
T 1xi4_A 1048 DN-------YDAPDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQ 1110 (1630)
T ss_pred hh-------ccHHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHH
Confidence 31 113336667778899999999988752 111222223 237788999999998774 4667889
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 005000 288 IVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELG 367 (720)
Q Consensus 288 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 367 (720)
+..++.+.|++++|.+.|.+. .|...|..++..+.+.|++++|++.|...++.. ++....+.+..+|++.++++..
T Consensus 1111 LAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleel 1186 (1630)
T 1xi4_A 1111 LAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAEL 1186 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHH
Confidence 999999999999999999764 677788889999999999999999998877654 3333344588888888888754
Q ss_pred HHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 005000 368 EWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP 447 (720)
Q Consensus 368 ~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 447 (720)
..+. + .++...+..+.+.|...|++++|...|... ..|..+...|.+.|++++|++.+++. -
T Consensus 1187 e~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~ 1248 (1630)
T 1xi4_A 1187 EEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------N 1248 (1630)
T ss_pred HHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------C
Confidence 4432 2 345566677999999999999999999986 48999999999999999999999876 3
Q ss_pred ChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 005000 448 DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLG 525 (720)
Q Consensus 448 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~ 525 (720)
+..+|..+-.+|...|++..|...... +..+++.+..++..|.+.|.+++|+.+++.. +.+| ....|.-|..
T Consensus 1249 n~~aWkev~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELai 1322 (1630)
T 1xi4_A 1249 STRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAI 1322 (1630)
T ss_pred CHHHHHHHHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHH
Confidence 568888889999999999998887543 4456777889999999999999999999776 5555 3456655655
Q ss_pred HHHhc--CCHHHHHHHHHHHHhcCC-----CCcchHHHHHhHhhhcCChhHHHHH
Q 005000 526 ACRVH--RDAEMAEMAAKQILELDP-----DNEAVYVLLCNIYAACNRWDNFREL 573 (720)
Q Consensus 526 ~~~~~--g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~~ 573 (720)
.+.+. ++..++.+.|..-..+.| ++...|..+..+|.+.|+|+.|...
T Consensus 1323 LyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1323 LYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 55554 466677777777777766 6778899999999999999999853
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.1e-15 Score=164.67 Aligned_cols=208 Identities=7% Similarity=0.004 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHcCCCCChhHhhHHhhhhhh-------cCCHH-------HHHHHHHhccC---C-CHHHHHHHHHHHHHc
Q 005000 366 LGEWVKTYIDKNKVKNDIFVGNALIDMYCK-------CGDVE-------KAQRVFREMLR---K-DKFTWTAMIVGLAIN 427 (720)
Q Consensus 366 ~a~~i~~~~~~~~~~~~~~~~~~li~~y~~-------~g~~~-------~A~~~~~~~~~---~-~~~~~~~li~~~~~~ 427 (720)
.+..++..+++.. +.+..+|..++..+.+ .|+++ +|..+|++..+ | +...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 4444555555432 3445566666666554 56655 66777776643 2 456677777777777
Q ss_pred CChHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCc-cHHHHHHHHHH-HHhcCCHHH
Q 005000 428 GHGDKSLDMFSQMLRASIIPDE--VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP-NEAHYGCMVDL-LGRAGHLNE 503 (720)
Q Consensus 428 g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~-~~~~g~~~e 503 (720)
|++++|..+|+++++. .|+. ..|...+..+.+.|++++|.++|++..+ ..| +...|...+.+ +...|+.++
T Consensus 335 g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~---~~~~~~~~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp TCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---CTTCCTHHHHHHHHHHHHHTCCHHH
T ss_pred CCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCCchHHHHHHHHHHHHHcCChhH
Confidence 7777777777777663 4432 3566666666666777777777776652 222 22223222222 235677777
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc----hHHHHHhHhhhcCChhHHHHHHHHH
Q 005000 504 ALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA----VYVLLCNIYAACNRWDNFRELRQMI 577 (720)
Q Consensus 504 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m 577 (720)
|.++|++. ...| +...|..++......|+.+.|..+++++++..|.++. .+...+......|+.+.+.++.+++
T Consensus 410 A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 410 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777665 2233 4666777777777777777777777777776655443 5555566666667777777776666
Q ss_pred Hh
Q 005000 578 LD 579 (720)
Q Consensus 578 ~~ 579 (720)
.+
T Consensus 490 ~~ 491 (530)
T 2ooe_A 490 FT 491 (530)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.76 E-value=4.9e-14 Score=160.64 Aligned_cols=350 Identities=11% Similarity=0.068 Sum_probs=276.3
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCC--CCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 005000 184 WNAMFSGYKRVKQFDETRKLFGEMERKGV--LPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMY 261 (720)
Q Consensus 184 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 261 (720)
-...+.+|...|.+.+|++++++..-.+- .-+...-+.++.+..+. +...+.+.....-+. ....+...+
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eIA~Ia 1059 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDIANIA 1059 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHHHHHH
Confidence 35567889999999999999999884321 12233444455555555 556666665544321 234477888
Q ss_pred HhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHH
Q 005000 262 AACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT 341 (720)
Q Consensus 262 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 341 (720)
...|.+++|..+|++... .....+.++ -..+++++|.++.++. .++.+|..+..++.+.|++++|++.|.+.
T Consensus 1060 i~lglyEEAf~IYkKa~~-~~~A~~VLi---e~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA-- 1131 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFDV-NTSAVQVLI---EHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-- 1131 (1630)
T ss_pred HhCCCHHHHHHHHHHcCC-HHHHHHHHH---HHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--
Confidence 899999999999999752 222223332 2788999999999877 34678999999999999999999999653
Q ss_pred CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHH
Q 005000 342 SNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMI 421 (720)
Q Consensus 342 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li 421 (720)
-|...|..+..+|.+.|+++.+.+.+....+.. ++..+.+.++..|+|.+++++..... ..++...|..+.
T Consensus 1132 ----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iG 1202 (1630)
T 1xi4_A 1132 ----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVG 1202 (1630)
T ss_pred ----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHH
Confidence 467788899999999999999999999988865 44444556999999999999654443 455777888899
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 005000 422 VGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHL 501 (720)
Q Consensus 422 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 501 (720)
..|...|++++|..+|... ..|..+...+.+.|++++|.+.+++. .+..+|..+..++...|++
T Consensus 1203 d~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~acve~~Ef 1266 (1630)
T 1xi4_A 1203 DRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEF 1266 (1630)
T ss_pred HHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHhhhhHH
Confidence 9999999999999999985 37899999999999999999999865 3568899999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhc--CChhHHHHHHHH
Q 005000 502 NEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAAC--NRWDNFRELRQM 576 (720)
Q Consensus 502 ~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~a~~~~~~ 576 (720)
..|....... ..++..+..++..|...|.+++|+.++++.++++|.+...|..|+.+|++- ++..++.+.|..
T Consensus 1267 ~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~ 1341 (1630)
T 1xi4_A 1267 RLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWS 1341 (1630)
T ss_pred HHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999987754 345666779999999999999999999999999999999999999888764 566666666553
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-16 Score=161.28 Aligned_cols=264 Identities=11% Similarity=0.042 Sum_probs=227.2
Q ss_pred CCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHh
Q 005000 311 RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALI 390 (720)
Q Consensus 311 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li 390 (720)
.++..+..++..+...|++++|+.+|+++.+.. +.+...+..+...+...|+++.|...+..+.+.. +.+..++..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 466678888999999999999999999998764 3344556667778889999999999999998865 45678889999
Q ss_pred hhhhhcC-CHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChh
Q 005000 391 DMYCKCG-DVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVD 466 (720)
Q Consensus 391 ~~y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 466 (720)
..|...| ++++|...|++..+ .+...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999999854 357789999999999999999999999999863 224567777888999999999
Q ss_pred hHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC----------CCCHHHHHHHHHHHHhcCCHHH
Q 005000 467 EGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PM----------KPNSIVWGALLGACRVHRDAEM 535 (720)
Q Consensus 467 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~----------~p~~~~~~~ll~~~~~~g~~~~ 535 (720)
+|.+.++++.+ ..+.+...+..+...|.+.|++++|.+.++++ .. +.+..+|..+...+...|++++
T Consensus 177 ~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999862 22445788999999999999999999999886 11 2346799999999999999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 536 AEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 536 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
|...+++++++.|+++..+..++.+|...|++++|.+.++++.+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999987654
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.74 E-value=4.9e-17 Score=166.92 Aligned_cols=285 Identities=12% Similarity=0.108 Sum_probs=113.9
Q ss_pred hcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHH
Q 005000 162 LCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRY 241 (720)
Q Consensus 162 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 241 (720)
+.|++++|.+.++++..|+ +|..++.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|...+..
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 7789999999999996664 999999999999999999999975 36778999999999999999999998888
Q ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccchHHHHH
Q 005000 242 VKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMID 321 (720)
Q Consensus 242 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~ 321 (720)
.++. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|..++.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~ 156 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAS 156 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHHHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHH
Confidence 8774 45678899999999999999999988864 67789999999999999999999999988 48999999
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHH
Q 005000 322 GYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEK 401 (720)
Q Consensus 322 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 401 (720)
++.+.|++++|++.++++ .+..++..++.+|...|+++.|...... +..++.-...++..|.+.|.+++
T Consensus 157 ~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHH
Confidence 999999999999999988 2678889999999999998888433221 11222223345566666666666
Q ss_pred HHHHHHhccCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 005000 402 AQRVFREMLRK---DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQ 478 (720)
Q Consensus 402 A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 478 (720)
|..+++....- ....|+-+.-.|++. +.+++.+..+.|.. .
T Consensus 226 ai~lLe~aL~le~ah~~~ftel~il~~ky---------------------------------~p~k~~ehl~~~~~---~ 269 (449)
T 1b89_A 226 LITMLEAALGLERAHMGMFTELAILYSKF---------------------------------KPQKMREHLELFWS---R 269 (449)
T ss_dssp HHHHHHHHTTSTTCCHHHHHHHHHHHHTT---------------------------------CHHHHHHHHHHHST---T
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHhc---------------------------------CHHHHHHHHHHHHH---H
Confidence 66665554322 233444444444432 22333333333321 1
Q ss_pred cCCCc------cHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 005000 479 HGIEP------NEAHYGCMVDLLGRAGHLNEALEVIKNM 511 (720)
Q Consensus 479 ~~~~p------~~~~~~~li~~~~~~g~~~eA~~~~~~~ 511 (720)
-+++| +...|.-++.+|..-++++.|...+-+-
T Consensus 270 ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 270 VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 22222 2445667777888888888887766554
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-14 Score=157.42 Aligned_cols=335 Identities=13% Similarity=0.053 Sum_probs=250.4
Q ss_pred CCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHhhcCCC-CchhHHHHHHHHHh----cCCHH
Q 005000 229 LKDLDVGKRAHRYVKECKIVPNLILENALTDMYAA----CGEMGFALEIFGNIKNK-DVISWTAIVTGYIN----RGQVD 299 (720)
Q Consensus 229 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~ 299 (720)
.++++.|...+....+.| +...+..|..+|.. .++.++|...|++..+. +...+..+...|.. .++++
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHH
Confidence 344444444444444432 33344444444444 44445554444443322 33344444444444 45555
Q ss_pred HHHHHHhhCCCC-CccchHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcHHHHHHH
Q 005000 300 MARQYFDQMPER-DYVLWTAMIDGYLR----VNRFREALTLFREMQTSNIRPDEFTIVSILTACAN----LGALELGEWV 370 (720)
Q Consensus 300 ~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~i 370 (720)
+|.+.|++..+. ++.++..+...|.. .+++++|++.|++..+.| +...+..+-..+.. .++.+.|...
T Consensus 133 ~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 209 (490)
T 2xm6_A 133 ESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQW 209 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence 555555554333 55677778888887 789999999999999876 56677777777776 7899999999
Q ss_pred HHHHHHcCCCCChhHhhHHhhhhhh----cCCHHHHHHHHHhccCC-CHHHHHHHHHHHHH----cCChHHHHHHHHHHH
Q 005000 371 KTYIDKNKVKNDIFVGNALIDMYCK----CGDVEKAQRVFREMLRK-DKFTWTAMIVGLAI----NGHGDKSLDMFSQML 441 (720)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~ 441 (720)
+....+.+ +...+..|..+|.. .+++++|...|++..+. +...+..+...|.. .++.++|++.|++..
T Consensus 210 ~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~ 286 (490)
T 2xm6_A 210 YRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSA 286 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Confidence 99999875 56677888888886 88999999999988654 67788888888888 899999999999998
Q ss_pred HCCCCCChHHHHHHHHHHHhc-----CChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC---CHHHHHHHHHhCCC
Q 005000 442 RASIIPDEVTYVGVLSACTHT-----GMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAG---HLNEALEVIKNMPM 513 (720)
Q Consensus 442 ~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g---~~~eA~~~~~~~~~ 513 (720)
+.| +...+..+...+... +++++|..+|++..+ .+ +...+..+..+|.+.| ++++|.+.|++.-.
T Consensus 287 ~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~ 359 (490)
T 2xm6_A 287 EQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE-QG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA 359 (490)
T ss_dssp TTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred HcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh-cC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH
Confidence 765 455666677777776 899999999999863 33 4567788888888877 88999999998733
Q ss_pred CCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhh----cCChhHHHHHHHHHHhCC
Q 005000 514 KPNSIVWGALLGACRV----HRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAA----CNRWDNFRELRQMILDRG 581 (720)
Q Consensus 514 ~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 581 (720)
..++..+..|...+.. .+++++|...++++.+.. ++.++..|+.+|.. .+++++|.+.+++..+.+
T Consensus 360 ~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 360 KGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 3578899999999988 899999999999999865 57899999999998 899999999999998866
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=9.2e-17 Score=167.85 Aligned_cols=261 Identities=10% Similarity=-0.023 Sum_probs=208.1
Q ss_pred CccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhh
Q 005000 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391 (720)
Q Consensus 312 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 391 (720)
+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+++.|...+..+.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44568888888888888888888888888754 4467778888888888888888888888888764 455778888999
Q ss_pred hhhhcCCHHHHHHHHHhccCCC-------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CChHHHHHHHH
Q 005000 392 MYCKCGDVEKAQRVFREMLRKD-------------KFTWTAMIVGLAINGHGDKSLDMFSQMLRASII-PDEVTYVGVLS 457 (720)
Q Consensus 392 ~y~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~ 457 (720)
.|.+.|++++|...|+++.+.+ ...+..+...+...|++++|++.|+++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 9999999999999998885432 223344578888999999999999999986322 15678889999
Q ss_pred HHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 005000 458 ACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEM 535 (720)
Q Consensus 458 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 535 (720)
.+...|++++|...|+++.+. .+.+...|..+..+|.+.|++++|.+.++++ ...| +..+|..+...+...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999998743 2346788999999999999999999999987 4455 58899999999999999999
Q ss_pred HHHHHHHHHhcCCC------------CcchHHHHHhHhhhcCChhHHHHHHHH
Q 005000 536 AEMAAKQILELDPD------------NEAVYVLLCNIYAACNRWDNFRELRQM 576 (720)
Q Consensus 536 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 576 (720)
|...+++++++.|+ +...+..++.++...|+.+.+.+..+.
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999998876 367889999999999999998887554
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-14 Score=160.13 Aligned_cols=404 Identities=11% Similarity=0.033 Sum_probs=243.5
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 005000 139 CHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK---DDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPT 215 (720)
Q Consensus 139 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 215 (720)
+..++.. +.+...|..++. +.+.|++++|+.+|+++.. .+...|..++..+.+.|++++|..+|++.... .|+
T Consensus 3 e~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~ 78 (530)
T 2ooe_A 3 EKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLH 78 (530)
T ss_dssp HHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCC
T ss_pred hhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCC
Confidence 4444433 447778999998 5789999999999998754 35668999999999999999999999999876 367
Q ss_pred HhhHHHHHHHH-hcCCCchHHHH----HHHHHHHc-CCCC-ChHHHHHHHHHHHh---------cCCHHHHHHHHhhcCC
Q 005000 216 SVTIVLVLSAC-AKLKDLDVGKR----AHRYVKEC-KIVP-NLILENALTDMYAA---------CGEMGFALEIFGNIKN 279 (720)
Q Consensus 216 ~~t~~~ll~~~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~li~~y~~---------~g~~~~A~~~~~~~~~ 279 (720)
...|...+... ...|+.+.|++ +++..++. |..| +..+|...+....+ .|+++.|..+|++...
T Consensus 79 ~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 79 IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 77776666533 35677777665 66666553 5443 56778888877665 6888999999988765
Q ss_pred -CCc---hhHHHHHHHH-------------HhcCCHHHHHHHHhh-------CC------CCC--------ccchHHHHH
Q 005000 280 -KDV---ISWTAIVTGY-------------INRGQVDMARQYFDQ-------MP------ERD--------YVLWTAMID 321 (720)
Q Consensus 280 -~~~---~~~~~li~~~-------------~~~g~~~~A~~~f~~-------~~------~~~--------~~~~~~li~ 321 (720)
|.. ..|....... .+.++++.|..++.. +. .++ ...|...+.
T Consensus 159 ~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~ 238 (530)
T 2ooe_A 159 NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQ 238 (530)
T ss_dssp SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHH
Confidence 221 2333222210 023345555554443 11 111 123444443
Q ss_pred HHHhc----CCh----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-------cCcHH-------HHHHHHHHHHHcCC
Q 005000 322 GYLRV----NRF----REALTLFREMQTSNIRPDEFTIVSILTACAN-------LGALE-------LGEWVKTYIDKNKV 379 (720)
Q Consensus 322 ~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-------~~~~~-------~a~~i~~~~~~~~~ 379 (720)
..... ++. ++|+.+|++..... +-+...+......+.+ .|+++ .|..++..+++.-.
T Consensus 239 ~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~ 317 (530)
T 2ooe_A 239 WEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL 317 (530)
T ss_dssp HHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhC
Confidence 32221 121 35566666666542 2244445444444443 46654 66666666665323
Q ss_pred CCChhHhhHHhhhhhhcCCHHHHHHHHHhccC--C-CH-HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHH
Q 005000 380 KNDIFVGNALIDMYCKCGDVEKAQRVFREMLR--K-DK-FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGV 455 (720)
Q Consensus 380 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 455 (720)
+.+..++..++..+.+.|++++|..+|+++.+ | +. ..|...+..+.+.|+.++|.++|++..+.. +.+...+...
T Consensus 318 p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~ 396 (530)
T 2ooe_A 318 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTA 396 (530)
T ss_dssp SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHH
Confidence 44566666667777777777777777766532 2 22 366666666666677777777777766542 1122222222
Q ss_pred HHH-HHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHH
Q 005000 456 LSA-CTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM----PMKPN--SIVWGALLGACR 528 (720)
Q Consensus 456 l~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~p~--~~~~~~ll~~~~ 528 (720)
... +...|++++|..+|+...+.. +.+...|..+++.+.+.|+.++|..+|++. +..|+ ...|...+....
T Consensus 397 a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~ 474 (530)
T 2ooe_A 397 ALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES 474 (530)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 222 224667777777777665332 224566666677777777777777777665 22222 346666666666
Q ss_pred hcCCHHHHHHHHHHHHhcCCCC
Q 005000 529 VHRDAEMAEMAAKQILELDPDN 550 (720)
Q Consensus 529 ~~g~~~~a~~~~~~~~~~~p~~ 550 (720)
.+|+.+.+..+.+++.+..|++
T Consensus 475 ~~G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 475 NIGDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp HSSCHHHHHHHHHHHHHHTHHH
T ss_pred HcCCHHHHHHHHHHHHHHCchh
Confidence 6777777777777777766643
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.2e-15 Score=149.34 Aligned_cols=268 Identities=10% Similarity=-0.014 Sum_probs=195.7
Q ss_pred HhcCCHHHHHHHHhhCCCCCc----cchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 005000 293 INRGQVDMARQYFDQMPERDY----VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGE 368 (720)
Q Consensus 293 ~~~g~~~~A~~~f~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 368 (720)
...|++..|+..++.....++ .....+..+|...|++++|+..++. .-.|+..++..+...+...++.+.+.
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHH
Confidence 344555555555555444322 1334456667777777777665533 12455556666666667777777777
Q ss_pred HHHHHHHHcCC-CCChhHhhHHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 005000 369 WVKTYIDKNKV-KNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP 447 (720)
Q Consensus 369 ~i~~~~~~~~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 447 (720)
+.++.+...+. +.+..++..+...|.+.|++++|.+.|++ ..+...+..++..|.+.|+.++|.+.|+++.+. .|
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p 161 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DE 161 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--Cc
Confidence 77777666553 33556677778889999999999999998 567889999999999999999999999999986 46
Q ss_pred ChHHH---HHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 005000 448 DEVTY---VGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGA 522 (720)
Q Consensus 448 ~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ 522 (720)
+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..+|.+.|++++|++.+++. ...| ++.+|..
T Consensus 162 ~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~ 239 (291)
T 3mkr_A 162 DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239 (291)
T ss_dssp TCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 65321 12223344568999999999999854 3567889999999999999999999999996 4556 6788999
Q ss_pred HHHHHHhcCCHHH-HHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHH
Q 005000 523 LLGACRVHRDAEM-AEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELR 574 (720)
Q Consensus 523 ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 574 (720)
++..+...|+.++ +...++++++++|+++.+ .++..+.+.++++..-+
T Consensus 240 l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 240 LVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHHc
Confidence 9999999999865 678999999999998754 34566666676665543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-15 Score=159.73 Aligned_cols=284 Identities=13% Similarity=0.082 Sum_probs=216.3
Q ss_pred HHhcCChhHHHH-HHHHHHHCCC-CC--CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCC
Q 005000 323 YLRVNRFREALT-LFREMQTSNI-RP--DEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGD 398 (720)
Q Consensus 323 ~~~~g~~~~A~~-~~~~m~~~g~-~p--~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~ 398 (720)
+...|++++|+. .|++...... .| +...+..+...+...|+++.|...+..+.+.. +.+..++..+...|.+.|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 445688999998 8886654321 11 34456778888899999999999999999875 5577889999999999999
Q ss_pred HHHHHHHHHhcc---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChH-HHHH---------------HHHHH
Q 005000 399 VEKAQRVFREML---RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV-TYVG---------------VLSAC 459 (720)
Q Consensus 399 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~---------------ll~a~ 459 (720)
+++|...|+++. ..+..+|..+...|...|++++|++.|+++.... |+.. .+.. .+..+
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 999999999874 3478899999999999999999999999999864 3332 2211 23344
Q ss_pred HhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 005000 460 THTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAE 537 (720)
Q Consensus 460 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 537 (720)
...|++++|..+|+++.+...-.++...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|++++|.
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4899999999999999754333235889999999999999999999999987 3445 6789999999999999999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCcCcHHHHHHH
Q 005000 538 MAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKL 617 (720)
Q Consensus 538 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l 617 (720)
..+++++++.|+++.++..++.+|.+.|++++|.+.++++.+.... ... .....+|....++..+
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--~~~-------------~~~~~~~~~~~~~~~l 336 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK--SRG-------------PRGEGGAMSENIWSTL 336 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT--C-------------------CCCCCHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CCC-------------ccccccchhhHHHHHH
Confidence 9999999999999999999999999999999999999998764321 100 0011355667777776
Q ss_pred HHHHHHH
Q 005000 618 DEMTSDL 624 (720)
Q Consensus 618 ~~l~~~~ 624 (720)
..+...+
T Consensus 337 ~~~~~~~ 343 (368)
T 1fch_A 337 RLALSML 343 (368)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6655443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1e-14 Score=158.09 Aligned_cols=369 Identities=11% Similarity=-0.026 Sum_probs=212.9
Q ss_pred eeeHHHHHHHHHhCCChhHHHHHHHHHHHC-----C--CCC-CHhhHHHHHHHHhcCCCchHHHHHHHHHHHcC------
Q 005000 181 VVTWNAMFSGYKRVKQFDETRKLFGEMERK-----G--VLP-TSVTIVLVLSACAKLKDLDVGKRAHRYVKECK------ 246 (720)
Q Consensus 181 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g--~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g------ 246 (720)
...||.+...+...|++++|++.|++..+. + ..| ...+|..+...+...|++++|...++.+.+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 456888888899999999999999876541 1 122 24566667777777777777777776665421
Q ss_pred CC-CChHHHHHHHHHHHhc--CCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccchHHHHHH-
Q 005000 247 IV-PNLILENALTDMYAAC--GEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDG- 322 (720)
Q Consensus 247 ~~-~~~~~~~~li~~y~~~--g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~- 322 (720)
.. ....++..+..++.+. +++++|...|++..+- ...++..+..+...
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~----------------------------~p~~~~~~~~~~~~~ 182 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK----------------------------KPKNPEFTSGLAIAS 182 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH----------------------------STTCHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh----------------------------CCCCHHHHHHHHHHH
Confidence 01 1123333333333333 2355555555543320 11133333333333
Q ss_pred --HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh----ccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhc
Q 005000 323 --YLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACA----NLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKC 396 (720)
Q Consensus 323 --~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~----~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~ 396 (720)
+...++.++|++.|++..+.. +.+..++..+...+. ..++.+.|...+..+.+.. +.+..++..+...|.+.
T Consensus 183 ~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~ 260 (472)
T 4g1t_A 183 YRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRK 260 (472)
T ss_dssp HHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHT
T ss_pred HHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHc
Confidence 234466667777777666543 223344444333333 2345666777777666654 44556677777777777
Q ss_pred CCHHHHHHHHHhccC---CCHHHHHHHHHHHHH-------------------cCChHHHHHHHHHHHHCCCCCChHHHHH
Q 005000 397 GDVEKAQRVFREMLR---KDKFTWTAMIVGLAI-------------------NGHGDKSLDMFSQMLRASIIPDEVTYVG 454 (720)
Q Consensus 397 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~-------------------~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 454 (720)
|++++|...|++..+ .+..+|..+...|.. .+..++|+..|++..+.. +.+..++..
T Consensus 261 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 339 (472)
T 4g1t_A 261 DEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSI 339 (472)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHH
T ss_pred CchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchhhhhhh
Confidence 777777777777642 245555555544432 233567888888887753 223456777
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHcCCCccH--HHHHHHHH-HHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc
Q 005000 455 VLSACTHTGMVDEGREYFADMTIQHGIEPNE--AHYGCMVD-LLGRAGHLNEALEVIKNM-PMKPNSIVWGALLGACRVH 530 (720)
Q Consensus 455 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~li~-~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~ll~~~~~~ 530 (720)
+...+...|++++|...|++... ....|.. ..+..+.. .+...|+.++|++.+++. .+.|+...+...
T Consensus 340 lg~~~~~~~~~~~A~~~~~kaL~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~------- 411 (472)
T 4g1t_A 340 LASLHALADQYEEAEYYFQKEFS-KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM------- 411 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH-------
T ss_pred HHHHHHHhccHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH-------
Confidence 88899999999999999998863 2322221 12333333 345789999999999886 567765444333
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCCCccCCcccE
Q 005000 531 RDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSM 590 (720)
Q Consensus 531 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 590 (720)
.+.+..++++.++.+|+++.+|..|+.+|...|++++|.+.+++..+.+-......+|
T Consensus 412 --~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 412 --KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp --HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred --HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 3445677888999999999999999999999999999999999998876544334444
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.9e-15 Score=150.50 Aligned_cols=246 Identities=9% Similarity=0.047 Sum_probs=200.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcC
Q 005000 320 IDGYLRVNRFREALTLFREMQTSNIRPDE--FTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCG 397 (720)
Q Consensus 320 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g 397 (720)
|.-....|++.+|+..++.... ..|+. .....+..++...|+++.+...+.. .-+|+..++..+...|.+.|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 3445678999999999887643 34543 3446677889999999998865533 24567778888999999999
Q ss_pred CHHHHHHHHHhcc----CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHH
Q 005000 398 DVEKAQRVFREML----RK-DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYF 472 (720)
Q Consensus 398 ~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 472 (720)
+.++|.+.++++. .| +...+..+...+.+.|++++|++.+++ ..+...+..+...+.+.|++++|.+.|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999874 24 566788888999999999999999987 456678888999999999999999999
Q ss_pred HHHHHHcCCCccHHH---HHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005000 473 ADMTIQHGIEPNEAH---YGCMVDLLGRAGHLNEALEVIKNM-P-MKPNSIVWGALLGACRVHRDAEMAEMAAKQILELD 547 (720)
Q Consensus 473 ~~m~~~~~~~p~~~~---~~~li~~~~~~g~~~eA~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 547 (720)
+.+.+. .|+... ...++..+...|++++|..+|+++ . .+++...|+.+..++...|++++|+..++++++++
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999743 355322 223445556679999999999998 2 33478899999999999999999999999999999
Q ss_pred CCCcchHHHHHhHhhhcCChhH-HHHHHHHHHhC
Q 005000 548 PDNEAVYVLLCNIYAACNRWDN-FRELRQMILDR 580 (720)
Q Consensus 548 p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~ 580 (720)
|+++.++..++.++...|++++ +.++++++.+.
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999976 56888887753
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.9e-15 Score=154.81 Aligned_cols=259 Identities=12% Similarity=-0.021 Sum_probs=191.5
Q ss_pred cchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhh
Q 005000 314 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMY 393 (720)
Q Consensus 314 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y 393 (720)
..|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 345556666666666666666666666543 2345555566666666666666666666666553 34456666677777
Q ss_pred hhcCCHHHHHHHHHhccCC---CHHHHHHH--------------HH-HHHHcCChHHHHHHHHHHHHCCCCCChHHHHHH
Q 005000 394 CKCGDVEKAQRVFREMLRK---DKFTWTAM--------------IV-GLAINGHGDKSLDMFSQMLRASIIPDEVTYVGV 455 (720)
Q Consensus 394 ~~~g~~~~A~~~~~~~~~~---~~~~~~~l--------------i~-~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 455 (720)
.+.|++++|.+.|+++.+. +...+..+ .. .+...|++++|++.++++.+.. +.+..++..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 7777777777777766422 12222222 22 3667788899999999988753 3356788888
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 005000 456 LSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDA 533 (720)
Q Consensus 456 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 533 (720)
...+...|++++|..+++++... .+.+...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH
Confidence 88999999999999999988743 2345778899999999999999999999987 3344 678899999999999999
Q ss_pred HHHHHHHHHHHhcCCC------------CcchHHHHHhHhhhcCChhHHHHHHHHH
Q 005000 534 EMAEMAAKQILELDPD------------NEAVYVLLCNIYAACNRWDNFRELRQMI 577 (720)
Q Consensus 534 ~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 577 (720)
++|...++++++..|+ ++..+..++.+|.+.|++++|.+++++.
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999999998 7889999999999999999999987643
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.68 E-value=9.8e-16 Score=159.98 Aligned_cols=230 Identities=12% Similarity=0.043 Sum_probs=194.6
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccC---CCHHHHHHHHHHH
Q 005000 348 EFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGL 424 (720)
Q Consensus 348 ~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 424 (720)
...+......+.+.|+++.|...+..+++.. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...|
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY 143 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3457777888899999999999999999875 55788999999999999999999999998853 4688999999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCh-----------HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHH
Q 005000 425 AINGHGDKSLDMFSQMLRASIIPDE-----------VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVD 493 (720)
Q Consensus 425 ~~~g~~~~A~~l~~~m~~~g~~p~~-----------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 493 (720)
...|++++|+..|+++.+. .|+. ..+..+...+...|++++|.++|+++.+...-.++...+..+..
T Consensus 144 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 9999999999999999884 3332 22334577889999999999999999854333236889999999
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHH
Q 005000 494 LLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFR 571 (720)
Q Consensus 494 ~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 571 (720)
.|.+.|++++|.+.++++ ...| +..+|..+..++...|++++|+..+++++++.|+++.++..++.+|.+.|++++|.
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999997 3444 68899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhC
Q 005000 572 ELRQMILDR 580 (720)
Q Consensus 572 ~~~~~m~~~ 580 (720)
+.++++.+.
T Consensus 302 ~~~~~al~~ 310 (365)
T 4eqf_A 302 SNFLTALSL 310 (365)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998764
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-16 Score=175.79 Aligned_cols=149 Identities=12% Similarity=0.100 Sum_probs=123.1
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhcC-------CCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHH
Q 005000 148 SSVFVQNALISTYCLCGEVDMARGIFDVS-------YKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIV 220 (720)
Q Consensus 148 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 220 (720)
.-..+||+||++||++|++++|.++|++| ..||++|||+||.||++.|++++|+++|++|.+.|+.||.+||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 34568999999999999999999999764 36899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCc-hHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-----CchhHHHHHHHHHh
Q 005000 221 LVLSACAKLKDL-DVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNK-----DVISWTAIVTGYIN 294 (720)
Q Consensus 221 ~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~ 294 (720)
++|.++++.|+. +.|.+++++|.+.|+.||..+|+.+++.+.+.+-++...+++..+..+ .+.+...|.+.|.+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~ 284 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHcc
Confidence 999999999985 789999999999999999999999998887776555555554444321 12333445555554
Q ss_pred cC
Q 005000 295 RG 296 (720)
Q Consensus 295 ~g 296 (720)
.+
T Consensus 285 d~ 286 (1134)
T 3spa_A 285 DG 286 (1134)
T ss_dssp CS
T ss_pred CC
Confidence 44
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.8e-16 Score=172.53 Aligned_cols=131 Identities=14% Similarity=0.118 Sum_probs=116.2
Q ss_pred CCChhHhhHHhhhhhhcCCHHHHHHHHHhcc-------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHH
Q 005000 380 KNDIFVGNALIDMYCKCGDVEKAQRVFREML-------RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY 452 (720)
Q Consensus 380 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 452 (720)
..-..+||+||++|+++|++++|.++|++|. .||+++||+||.||++.|+.++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3446789999999999999999999998763 579999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCh-hhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 005000 453 VGVLSACTHTGMV-DEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM 511 (720)
Q Consensus 453 ~~ll~a~~~~g~~-~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~ 511 (720)
+++|.++++.|+. ++|.++|++|. ..|+.||..+|++++....|.+-++...++...+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~-~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMS-QEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH-HHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHH-HcCCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 9999999999985 78999999997 6899999999999998888876666655554433
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-14 Score=148.59 Aligned_cols=263 Identities=8% Similarity=-0.016 Sum_probs=165.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccchHHHHHHHHhcCChhHH
Q 005000 253 LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREA 332 (720)
Q Consensus 253 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 332 (720)
.+..+...+...|++++|..+|+++.+.+ ..+...|..+...+...|++++|
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----------------------------~~~~~~~~~l~~~~~~~~~~~~A 74 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA----------------------------PEREEAWRSLGLTQAENEKDGLA 74 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC----------------------------CCCHHHHHHHHHHHHHcCCHHHH
Confidence 34455566666666666666666543210 11233444444444455555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHH--------------hh-hhhhcC
Q 005000 333 LTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNAL--------------ID-MYCKCG 397 (720)
Q Consensus 333 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l--------------i~-~y~~~g 397 (720)
+..|+++.+.. +.+..++..+...+...|+++.|...+..+.+.. +.+...+..+ .. .+...|
T Consensus 75 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (327)
T 3cv0_A 75 IIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPN 152 (327)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHH
T ss_pred HHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcc
Confidence 55555444432 2233444444444445555555555554444432 1111122221 22 477778
Q ss_pred CHHHHHHHHHhcc---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHH
Q 005000 398 DVEKAQRVFREML---RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFAD 474 (720)
Q Consensus 398 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 474 (720)
++++|...|+++. ..+...|..+...+...|++++|++.++++.+.. +.+..++..+...+...|++++|...+++
T Consensus 153 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 231 (327)
T 3cv0_A 153 EYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNR 231 (327)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888888774 2367788888888888888888888888887753 23456778888888888888888888888
Q ss_pred HHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHH
Q 005000 475 MTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN-------------SIVWGALLGACRVHRDAEMAEMAA 540 (720)
Q Consensus 475 m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-------------~~~~~~ll~~~~~~g~~~~a~~~~ 540 (720)
+.+. .+.+...+..+...|.+.|++++|.+.++++ ...|+ ..+|..+..++...|++++|...+
T Consensus 232 a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 232 ALDI--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred HHHc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 7632 1335677888888888889999888888876 22333 667888888889999999988888
Q ss_pred HHHHhcCC
Q 005000 541 KQILELDP 548 (720)
Q Consensus 541 ~~~~~~~p 548 (720)
+++++..|
T Consensus 310 ~~~l~~~~ 317 (327)
T 3cv0_A 310 AQNVEPFA 317 (327)
T ss_dssp TCCSHHHH
T ss_pred HHHHHhcc
Confidence 77766544
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.1e-14 Score=152.50 Aligned_cols=235 Identities=9% Similarity=-0.040 Sum_probs=128.5
Q ss_pred cCCHHHHHHHHhhCC---CCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 005000 295 RGQVDMARQYFDQMP---ERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVK 371 (720)
Q Consensus 295 ~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~ 371 (720)
.|+.++|.+.+++.. ..+..+|..+...|...|++++|+..|++..+.. +-+..++..+...+...+...
T Consensus 226 ~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~------ 298 (472)
T 4g1t_A 226 GEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQV------ 298 (472)
T ss_dssp ----CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHH------
T ss_pred hhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHh------
Confidence 345566666666543 3456678889999999999999999999988753 223444444433332211100
Q ss_pred HHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhcc---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 005000 372 TYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML---RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD 448 (720)
Q Consensus 372 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 448 (720)
.... ...........+..+.|...|+... ..+..+|..+...|...|++++|++.|++.++....|.
T Consensus 299 ---~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~ 368 (472)
T 4g1t_A 299 ---MNLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPV 368 (472)
T ss_dssp ---HHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHH
T ss_pred ---hhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCCh
Confidence 0000 0111111222334677888887764 23566788899999999999999999999988644433
Q ss_pred hH--HHHHHHH-HHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 005000 449 EV--TYVGVLS-ACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGAL 523 (720)
Q Consensus 449 ~~--t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l 523 (720)
.. .+..+.. .....|+.++|+..|++.. .+.|+....... .+.+.+++++. ...| +..+|..|
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal---~i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~L 436 (472)
T 4g1t_A 369 AKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV---KINQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVL 436 (472)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH---HSCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 21 2222322 3457899999999999876 345654333222 22333444433 2234 67889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 005000 524 LGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLC 558 (720)
Q Consensus 524 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 558 (720)
...+...|++++|++.++++++++|.+|.+..-++
T Consensus 437 G~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 437 AFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHCC------------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 99999999999999999999999998887766554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-13 Score=132.41 Aligned_cols=193 Identities=12% Similarity=0.039 Sum_probs=156.9
Q ss_pred CCChhHhhHHhhhhhhcCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHH
Q 005000 380 KNDIFVGNALIDMYCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD-EVTYVGV 455 (720)
Q Consensus 380 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~l 455 (720)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++.++. .|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 55677788899999999999999999998754 36788999999999999999999999999985 454 4678888
Q ss_pred HHHHHhc-----------CChhhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 005000 456 LSACTHT-----------GMVDEGREYFADMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPNSIVWGA 522 (720)
Q Consensus 456 l~a~~~~-----------g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~ 522 (720)
..++... |++++|+..|++..+. .| +...+..+..+|...|++++|++.|++. ....+...|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8889999 9999999999998732 34 5778889999999999999999999987 22278899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHH
Q 005000 523 LLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMI 577 (720)
Q Consensus 523 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 577 (720)
+..++...|++++|+..++++++++|+++..+..++.++...|++++|.+.+++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999987754
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-13 Score=134.42 Aligned_cols=210 Identities=10% Similarity=0.012 Sum_probs=158.8
Q ss_pred HhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCC------C----HHHHHHHHHHHHHc
Q 005000 358 CANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK------D----KFTWTAMIVGLAIN 427 (720)
Q Consensus 358 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~------~----~~~~~~li~~~~~~ 427 (720)
+...|+++.|...+..+.+.. .+..++..+...|...|++++|...|++..+. + ...|..+...|...
T Consensus 15 ~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 92 (258)
T 3uq3_A 15 FYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKL 92 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHc
Confidence 333344444444444443333 34455566666666677777777766665321 1 46778888888888
Q ss_pred CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 005000 428 GHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEV 507 (720)
Q Consensus 428 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~ 507 (720)
|++++|++.|++.... .|+. ..+...|++++|...++.+.. ..+.+...+..+...|.+.|++++|.+.
T Consensus 93 ~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 161 (258)
T 3uq3_A 93 GDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKA 161 (258)
T ss_dssp TCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999999999888874 4553 345566888999999998862 2233567788899999999999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 508 IKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 508 ~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
++++ ...| +..+|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 162 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 162 YTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9987 3334 68889999999999999999999999999999999999999999999999999999999988764
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.3e-13 Score=133.90 Aligned_cols=235 Identities=12% Similarity=0.031 Sum_probs=179.8
Q ss_pred chHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCC--CC----hhHhhH
Q 005000 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVK--ND----IFVGNA 388 (720)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~--~~----~~~~~~ 388 (720)
.|..+...+...|++++|+..|+++.+.. .+...+..+..++...|+++.|...+..+.+.... ++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 46666777777777777777777777665 56667777777777777777777777776654311 11 467788
Q ss_pred HhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCChhh
Q 005000 389 LIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD-EVTYVGVLSACTHTGMVDE 467 (720)
Q Consensus 389 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 467 (720)
+...|.+.|++++|...|++....+.. ...+...|++++|+..++++... .|+ ...+..+...+...|++++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHH
Confidence 888888999999999998887532111 23466678889999999998885 344 3577788888999999999
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005000 468 GREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILE 545 (720)
Q Consensus 468 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 545 (720)
|...++++.+.. +.+...+..+...|.+.|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++
T Consensus 158 A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 158 AVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999987432 345788889999999999999999999887 3444 578899999999999999999999999999
Q ss_pred cC------CCCcchHHHHHhH
Q 005000 546 LD------PDNEAVYVLLCNI 560 (720)
Q Consensus 546 ~~------p~~~~~~~~l~~~ 560 (720)
+. |++...+..+..+
T Consensus 236 ~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 236 KDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHTTTTHHHHHHHHHHT
T ss_pred hChhhcCCCchHHHHHHHHHh
Confidence 98 8776666665543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.52 E-value=2e-12 Score=138.60 Aligned_cols=376 Identities=10% Similarity=0.007 Sum_probs=204.9
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh---HHHHHHHhcCCCCCeeeHHHHHHHHHhCC--
Q 005000 121 LLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEV---DMARGIFDVSYKDDVVTWNAMFSGYKRVK-- 195 (720)
Q Consensus 121 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g-- 195 (720)
+...+.+.|++++|.+++..+.+.| ++..+..|..+|...|+. ++|.+.|+...+.+...+..+...+...|
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 3445566778888888888887766 334455566666677777 88888888776667777777777555555
Q ss_pred ---ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCc---hHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHH
Q 005000 196 ---QFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDL---DVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGF 269 (720)
Q Consensus 196 ---~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 269 (720)
++++|+..|++..+.|... .+..+...+...+.. ..+.+.+....+.| +......|..+|...+.++.
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 6778888888888766432 444444444443332 22333344333333 23344445555555443222
Q ss_pred HHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccchHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCC
Q 005000 270 ALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVN---RFREALTLFREMQTSNIRP 346 (720)
Q Consensus 270 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p 346 (720)
..+.+..+++.....++.++..+...|...| +.++|+..|++..+.| .+
T Consensus 160 ---------------------------~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~ 211 (452)
T 3e4b_A 160 ---------------------------HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TV 211 (452)
T ss_dssp ---------------------------GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CS
T ss_pred ---------------------------CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CH
Confidence 2233444444444555556777777777777 7777777777777665 23
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhc----CCHHHHHHHHHhccCCCHHHHHHHHH
Q 005000 347 DEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKC----GDVEKAQRVFREMLRKDKFTWTAMIV 422 (720)
Q Consensus 347 ~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~----g~~~~A~~~~~~~~~~~~~~~~~li~ 422 (720)
+...+ ..|..+|... +++++|...|+.....+...+..+..
T Consensus 212 ~a~~~-----------------------------------~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~ 256 (452)
T 3e4b_A 212 TAQRV-----------------------------------DSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQ 256 (452)
T ss_dssp CHHHH-----------------------------------HHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHH
T ss_pred HHHHH-----------------------------------HHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 33222 2333333332 56666666666665235555666655
Q ss_pred H-H--HHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC-----ChhhHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 005000 423 G-L--AINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTG-----MVDEGREYFADMTIQHGIEPNEAHYGCMVDL 494 (720)
Q Consensus 423 ~-~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 494 (720)
. | ...++.++|++.|++..+.| +......+...|. .| ++++|.++|++.. .-++..+..|..+
T Consensus 257 ~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~ 327 (452)
T 3e4b_A 257 LLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQI 327 (452)
T ss_dssp HHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHH
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHH
Confidence 5 3 34677777777777777665 4455555555554 44 7778888776542 4456666667767
Q ss_pred HHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhh--hc
Q 005000 495 LGR----AGHLNEALEVIKNMPMKPNSIVWGALLGACRV----HRDAEMAEMAAKQILELDPDNEAVYVLLCNIYA--AC 564 (720)
Q Consensus 495 ~~~----~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~ 564 (720)
|.. ..++++|.+.|++.....+......|...|.. .++.++|...++++.+..+.+ ....+..+.. ..
T Consensus 328 y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~ 405 (452)
T 3e4b_A 328 YRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTP 405 (452)
T ss_dssp HHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCH
T ss_pred HHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCH
Confidence 665 33788888888776323344455556665553 458888888888888876543 3334444432 33
Q ss_pred CChhHHHHHHHHHHh
Q 005000 565 NRWDNFRELRQMILD 579 (720)
Q Consensus 565 g~~~~a~~~~~~m~~ 579 (720)
++.++|.++.+.-++
T Consensus 406 ~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 406 AQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666666555433
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=5.3e-13 Score=132.80 Aligned_cols=241 Identities=11% Similarity=-0.038 Sum_probs=187.5
Q ss_pred hcCChhHHHHHHHHHHHCCCC---CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHH
Q 005000 325 RVNRFREALTLFREMQTSNIR---PDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEK 401 (720)
Q Consensus 325 ~~g~~~~A~~~~~~m~~~g~~---p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 401 (720)
..|++++|+..|+++.+.... .+..++..+...+...|+++.|...+..+.+.. +.+..++..+...|.+.|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 356788888888888775321 134566677777888888888888888887764 4467788889999999999999
Q ss_pred HHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 005000 402 AQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQ 478 (720)
Q Consensus 402 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 478 (720)
|...|++..+ .+...|..+...|...|++++|++.|+++.+. .|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999998853 36788999999999999999999999999884 566655555566667889999999999887643
Q ss_pred cCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 005000 479 HGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN-----SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA 552 (720)
Q Consensus 479 ~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 552 (720)
. +++...+ .++..+...++.++|.+.+++. ...|+ ..+|..+...+...|++++|...++++++++|++..
T Consensus 174 ~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 S--DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp S--CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred C--CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 2 3344444 4777788888999999999886 33332 578889999999999999999999999999998754
Q ss_pred hHHHHHhHhhhcCChhHHHHHH
Q 005000 553 VYVLLCNIYAACNRWDNFRELR 574 (720)
Q Consensus 553 ~~~~l~~~~~~~g~~~~a~~~~ 574 (720)
.+ +.++...|++++|.+.+
T Consensus 251 ~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHhhHHHH
Confidence 44 66788889999988765
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.51 E-value=9.4e-13 Score=130.83 Aligned_cols=244 Identities=10% Similarity=-0.007 Sum_probs=128.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---CCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 005000 285 WTAIVTGYINRGQVDMARQYFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANL 361 (720)
Q Consensus 285 ~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 361 (720)
+......+.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++....+..|+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------- 72 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKA------------- 72 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTC-------------
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhH-------------
Confidence 33444555556666666666555432 23345555555555666666666666555542211111
Q ss_pred CcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHH
Q 005000 362 GALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFS 438 (720)
Q Consensus 362 ~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~ 438 (720)
....+..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|++.|+
T Consensus 73 --------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 132 (272)
T 3u4t_A 73 --------------------KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYME 132 (272)
T ss_dssp --------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHG
T ss_pred --------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 011244445555555555555555554421 234455555555555555555555555
Q ss_pred HHHHCCCCCCh-HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC---HHHHHHHHHhC---
Q 005000 439 QMLRASIIPDE-VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGH---LNEALEVIKNM--- 511 (720)
Q Consensus 439 ~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~---~~eA~~~~~~~--- 511 (720)
+..+. .|+. ..+..+...+...+++++|.+.|+.+.+.. +.+...+..+...+...|+ +++|...++++
T Consensus 133 ~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 133 KQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp GGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred HHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 55443 2222 333333323333445566666655554221 1224444455555555555 44454444443
Q ss_pred -CCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcC
Q 005000 512 -PMKPN------SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACN 565 (720)
Q Consensus 512 -~~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 565 (720)
...|+ ..+|..+...+...|++++|...++++++++|+++.+.-.+..+....+
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 11122 2467778888999999999999999999999999888877776655443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.9e-11 Score=121.55 Aligned_cols=223 Identities=12% Similarity=-0.015 Sum_probs=142.2
Q ss_pred CccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhh
Q 005000 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391 (720)
Q Consensus 312 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 391 (720)
++.++..+...|...|++++|+..|++..+.+ +... +..+..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a-----------------------------------~~~lg~ 46 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSG-----------------------------------CFNLGV 46 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHH-----------------------------------HHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHH-----------------------------------HHHHHH
Confidence 44556666666777777777777777666522 2233 334444
Q ss_pred hhhh----cCCHHHHHHHHHhccCC-CHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh-
Q 005000 392 MYCK----CGDVEKAQRVFREMLRK-DKFTWTAMIVGLAI----NGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTH- 461 (720)
Q Consensus 392 ~y~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~- 461 (720)
.|.. .|++++|...|++..+. +..++..+...|.. .+++++|++.|++..+.+ +...+..+...+..
T Consensus 47 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~ 123 (273)
T 1ouv_A 47 LYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG 123 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC
T ss_pred HHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC
Confidence 4444 55566666555555322 45555666666666 666666666666666653 45556666666666
Q ss_pred ---cCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c
Q 005000 462 ---TGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR----AGHLNEALEVIKNMPMKPNSIVWGALLGACRV----H 530 (720)
Q Consensus 462 ---~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~----~ 530 (720)
.+++++|..+|++..+ .+ +...+..+...|.+ .+++++|.+.+++.-...+...+..+...+.. .
T Consensus 124 ~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 124 KVVTRDFKKAVEYFTKACD-LN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred CCcccCHHHHHHHHHHHHh-cC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC
Confidence 6777777777776652 22 44555666666666 77777777777765222355666777777777 7
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhh----cCChhHHHHHHHHHHhCC
Q 005000 531 RDAEMAEMAAKQILELDPDNEAVYVLLCNIYAA----CNRWDNFRELRQMILDRG 581 (720)
Q Consensus 531 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 581 (720)
+++++|...++++++.+| +..+..++.+|.. .+++++|.+.+++..+.|
T Consensus 200 ~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 200 KNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 778888888887777765 4677777788877 778888888777776654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.47 E-value=4.1e-12 Score=124.63 Aligned_cols=197 Identities=10% Similarity=-0.024 Sum_probs=158.7
Q ss_pred hhHhhHHhhhhhhcCCHHHHHHHHHhcc---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 005000 383 IFVGNALIDMYCKCGDVEKAQRVFREML---RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSAC 459 (720)
Q Consensus 383 ~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 459 (720)
...+..+...|...|++++|...|+++. ..+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 4556777788888888888888888774 2367788888888888999999999998888753 23556777788888
Q ss_pred HhcCChhhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 005000 460 THTGMVDEGREYFADMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMA 536 (720)
Q Consensus 460 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 536 (720)
...|++++|.++++++.. .+..| +...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 889999999999988763 22344 5677788888899999999999998886 3334 577888888889999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 537 EMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 537 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
...++++++..|++...+..++.+|...|++++|.+.++.+.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999888888899999999999999999988887643
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.3e-12 Score=136.93 Aligned_cols=332 Identities=9% Similarity=-0.012 Sum_probs=205.5
Q ss_pred CCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCH---HHHHHHHhhcCCCCchhHHHHHHHHHhcC-----CHHH
Q 005000 229 LKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEM---GFALEIFGNIKNKDVISWTAIVTGYINRG-----QVDM 300 (720)
Q Consensus 229 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~ 300 (720)
.|++++|.+++..+.+.| +...+..|..+|...|+. ++|...|++..+.++..+..+...+...+ +.++
T Consensus 16 ~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~ 92 (452)
T 3e4b_A 16 RGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHE 92 (452)
T ss_dssp HHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHH
Confidence 344444444444444433 122222333344444444 55555555554444444555554343333 5566
Q ss_pred HHHHHhhCCCC-CccchHHHHHHHHhcCChh---HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----cHHHHHHHHH
Q 005000 301 ARQYFDQMPER-DYVLWTAMIDGYLRVNRFR---EALTLFREMQTSNIRPDEFTIVSILTACANLG----ALELGEWVKT 372 (720)
Q Consensus 301 A~~~f~~~~~~-~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----~~~~a~~i~~ 372 (720)
|.+.|++..++ +...+..|...|...+..+ ++.+.+......|. |. ....+...+...+ ..+.+..++.
T Consensus 93 A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~-~~--a~~~Lg~~y~~~~~~~~~~~~a~~~~~ 169 (452)
T 3e4b_A 93 AESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY-PE--AGLAQVLLYRTQGTYDQHLDDVERICK 169 (452)
T ss_dssp HHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC-TT--HHHHHHHHHHHHTCGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC-HH--HHHHHHHHHHcCCCcccCHHHHHHHHH
Confidence 66666655433 4557777777777665533 35555555555553 22 3333344444444 3444444444
Q ss_pred HHHHcCCCCChhHhhHHhhhhhhcC---CHHHHHHHHHhccCC---CHHHHHHHHHHHHHc----CChHHHHHHHHHHHH
Q 005000 373 YIDKNKVKNDIFVGNALIDMYCKCG---DVEKAQRVFREMLRK---DKFTWTAMIVGLAIN----GHGDKSLDMFSQMLR 442 (720)
Q Consensus 373 ~~~~~~~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~----g~~~~A~~l~~~m~~ 442 (720)
... ..++..+..|..+|.+.| +.++|.+.|+...+. +...+..+...|... ++.++|++.|++..
T Consensus 170 ~a~----~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa- 244 (452)
T 3e4b_A 170 AAL----NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA- 244 (452)
T ss_dssp HHT----TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-
T ss_pred HHH----cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-
Confidence 333 233447888999999999 899999999987543 444556777777554 68999999999987
Q ss_pred CCCCCChHHHHHHHHH-H--HhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC-----CHHHHHHHHHhCCCC
Q 005000 443 ASIIPDEVTYVGVLSA-C--THTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAG-----HLNEALEVIKNMPMK 514 (720)
Q Consensus 443 ~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-----~~~eA~~~~~~~~~~ 514 (720)
.| +...+..+... + ...+++++|.++|++.. +.| +...+..|..+|. .| ++++|.+.|++.. .
T Consensus 245 ~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa-~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~ 315 (452)
T 3e4b_A 245 PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGR-AAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G 315 (452)
T ss_dssp GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T
T ss_pred CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C
Confidence 33 34455555555 3 56899999999999986 444 6677778888887 55 9999999999998 5
Q ss_pred CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhh----cCChhHHHHHHHHHHhCCC
Q 005000 515 PNSIVWGALLGACRV----HRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAA----CNRWDNFRELRQMILDRGI 582 (720)
Q Consensus 515 p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 582 (720)
.++..+..|...|.. ..++++|...++++.+. .++.....|+.+|.. ..+.++|...++...+.|.
T Consensus 316 g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 316 REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 578888888877766 34999999999999875 456789999999985 4589999999999988764
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.46 E-value=7.1e-12 Score=120.20 Aligned_cols=197 Identities=14% Similarity=0.021 Sum_probs=155.6
Q ss_pred ChhHhhHHhhhhhhcCCHHHHHHHHHhcc---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 005000 382 DIFVGNALIDMYCKCGDVEKAQRVFREML---RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSA 458 (720)
Q Consensus 382 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 458 (720)
+..++..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++.... +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 45566777888888888888888888764 2356788888888888888888888888888753 2355677778888
Q ss_pred HHhc-CChhhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 005000 459 CTHT-GMVDEGREYFADMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAE 534 (720)
Q Consensus 459 ~~~~-g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~ 534 (720)
+... |++++|...++.+.+ .+..| +...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 8888 889999988888863 22333 3567788888888899999998888876 3334 5778888888888999999
Q ss_pred HHHHHHHHHHhcCC-CCcchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 535 MAEMAAKQILELDP-DNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 535 ~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
+|...++++++..| +++..+..++.++...|+.++|...++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 99999999998888 88888888888888899999998888887653
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=2e-11 Score=121.42 Aligned_cols=226 Identities=10% Similarity=-0.004 Sum_probs=166.1
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHhhCCCC-CccchHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005000 281 DVISWTAIVTGYINRGQVDMARQYFDQMPER-DYVLWTAMIDGYLR----VNRFREALTLFREMQTSNIRPDEFTIVSIL 355 (720)
Q Consensus 281 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 355 (720)
+..++..+...|...|++++|.+.|++..++ +..++..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l- 80 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL- 80 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH-
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH-
Confidence 5677888899999999999999999987655 56678888899999 999999999999887764 33444333
Q ss_pred HHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhh----cCCHHHHHHHHHhccCC-CHHHHHHHHHHHHH----
Q 005000 356 TACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCK----CGDVEKAQRVFREMLRK-DKFTWTAMIVGLAI---- 426 (720)
Q Consensus 356 ~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~---- 426 (720)
..+|.. .+++++|...|++..+. +..++..+...|..
T Consensus 81 ----------------------------------g~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~ 126 (273)
T 1ouv_A 81 ----------------------------------GNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVV 126 (273)
T ss_dssp ----------------------------------HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSS
T ss_pred ----------------------------------HHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCc
Confidence 334444 55566666665555332 45566666666666
Q ss_pred cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh----cCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHh----c
Q 005000 427 NGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTH----TGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR----A 498 (720)
Q Consensus 427 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~ 498 (720)
.+++++|++.|++..+.+ +...+..+...+.. .+++++|...|++..+ . .+...+..+..+|.+ .
T Consensus 127 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-~---~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 127 TRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACD-L---KDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTCSSC
T ss_pred ccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCC
Confidence 777777777777777754 44556666666766 7888888888887763 2 245667778888888 8
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCc
Q 005000 499 GHLNEALEVIKNMPMKPNSIVWGALLGACRV----HRDAEMAEMAAKQILELDPDNE 551 (720)
Q Consensus 499 g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~ 551 (720)
+++++|.+.+++.-...+...+..+...+.. .+++++|...++++++++|+++
T Consensus 200 ~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 200 KNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 8888888888876212236777888888888 8999999999999999988753
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.2e-12 Score=125.62 Aligned_cols=196 Identities=14% Similarity=0.146 Sum_probs=142.1
Q ss_pred ChhHhhHHhhhhhhcCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 005000 382 DIFVGNALIDMYCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSA 458 (720)
Q Consensus 382 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 458 (720)
....+..+...+.+.|++++|...|+++.+ .+...|..+...+...|++++|++.|+++.+.. +.+..++..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 345566777788888888888888888753 356788888888888888999998888888753 2355677778888
Q ss_pred HHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 005000 459 CTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMA 536 (720)
Q Consensus 459 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 536 (720)
+...|++++|.++++++.+.. +.+...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 888899999999888886432 345677888888888999999999888886 3333 677888888888899999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 537 EMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 537 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
...++++++..|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 99999999988888888889999999999999999988888663
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-11 Score=128.78 Aligned_cols=243 Identities=14% Similarity=0.085 Sum_probs=185.2
Q ss_pred cchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc-HHHHHHHHHHHHHcCCCCChhHhhHHhhh
Q 005000 314 VLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGA-LELGEWVKTYIDKNKVKNDIFVGNALIDM 392 (720)
Q Consensus 314 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 392 (720)
..|+.+...+.+.|++++|+..|++.+... +-+...+..+..++...|+ ++.|...+..+++.. +.+..+|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 467778888888888999999998888753 3345666777777777885 888888888887765 4467788888888
Q ss_pred hhhcCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHh-cCChhh
Q 005000 393 YCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP-DEVTYVGVLSACTH-TGMVDE 467 (720)
Q Consensus 393 y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~-~g~~~~ 467 (720)
|.+.|++++|+..|+++.. .+...|..+...+...|++++|+..|+++++. .| +...|..+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchH
Confidence 8888999999988888753 36778888888888889999999999998885 34 45678888888887 565577
Q ss_pred H-----HHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC-------
Q 005000 468 G-----REYFADMTIQHGIEP-NEAHYGCMVDLLGRAG--HLNEALEVIKNMPMKP-NSIVWGALLGACRVHR------- 531 (720)
Q Consensus 468 a-----~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g--~~~eA~~~~~~~~~~p-~~~~~~~ll~~~~~~g------- 531 (720)
| +..|++..+ +.| +...|..+..+|.+.| ++++|++.++++...| +...+..+...+...|
T Consensus 254 A~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 7 477777653 234 4667888888888887 5888888888775555 5667788888877763
Q ss_pred --CHHHHHHHHHHH-HhcCCCCcchHHHHHhHhhh
Q 005000 532 --DAEMAEMAAKQI-LELDPDNEAVYVLLCNIYAA 563 (720)
Q Consensus 532 --~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 563 (720)
.+++|+.+++++ .+++|.....|..++..+..
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 258889999998 88899888787777766543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.6e-11 Score=120.32 Aligned_cols=239 Identities=11% Similarity=0.080 Sum_probs=184.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC--CCcc----chHHHHH
Q 005000 251 LILENALTDMYAACGEMGFALEIFGNIKN---KDVISWTAIVTGYINRGQVDMARQYFDQMPE--RDYV----LWTAMID 321 (720)
Q Consensus 251 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~----~~~~li~ 321 (720)
..........+...|++++|...|++..+ .+...|..+...|...|++++|...|++..+ .+.. +|..+..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 34455677889999999999999998754 3566899999999999999999999998755 2333 3888999
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHH
Q 005000 322 GYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEK 401 (720)
Q Consensus 322 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 401 (720)
.|...|++++|+..|++..+.. +.+..++..+...|.+.|++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~------------------------------------~~~~~~~~~l~~~~~~~~~~~~ 126 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD------------------------------------TTRLDMYGQIGSYFYNKGNFPL 126 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS------------------------------------TTCTHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC------------------------------------cccHHHHHHHHHHHHHccCHHH
Confidence 9999999999999999888632 2344567788888999999999
Q ss_pred HHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCC---hhhHHHHHHH
Q 005000 402 AQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD-EVTYVGVLSACTHTGM---VDEGREYFAD 474 (720)
Q Consensus 402 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~---~~~a~~~~~~ 474 (720)
|...|++..+ .+...|..+...+...+++++|++.|+++.+. .|+ ...+..+..++...|+ +++|...+++
T Consensus 127 A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 204 (272)
T 3u4t_A 127 AIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEK 204 (272)
T ss_dssp HHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence 9999998864 35677777773444456999999999999885 444 5677777788888888 8889999998
Q ss_pred HHHHcCCCcc------HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005000 475 MTIQHGIEPN------EAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGAC 527 (720)
Q Consensus 475 m~~~~~~~p~------~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~ 527 (720)
+.+...-.|+ ...|..+...|.+.|++++|.+.++++ ...| +...+..+....
T Consensus 205 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 205 LIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC---
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhh
Confidence 8755433444 267888999999999999999999987 4556 455555544433
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=3.9e-12 Score=123.80 Aligned_cols=215 Identities=13% Similarity=0.086 Sum_probs=141.3
Q ss_pred CccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhh
Q 005000 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391 (720)
Q Consensus 312 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 391 (720)
....|..+...+...|++++|+..|+++.+.. +.+..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~------------------------------------~~~~~~~~~la~ 65 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN------------------------------------KEDAIPYINFAN 65 (243)
T ss_dssp --------------------CCTTHHHHHTTC------------------------------------TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC------------------------------------cccHHHHHHHHH
Confidence 44566677777777777777777777776532 223344455556
Q ss_pred hhhhcCCHHHHHHHHHhcc---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhH
Q 005000 392 MYCKCGDVEKAQRVFREML---RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEG 468 (720)
Q Consensus 392 ~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 468 (720)
.|.+.|++++|...|+++. ..+...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|
T Consensus 66 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A 144 (243)
T 2q7f_A 66 LLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLA 144 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 6666666666666666553 2356677777777788888888888888877753 33456777777888888888888
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005000 469 REYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILEL 546 (720)
Q Consensus 469 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (720)
..+++++.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...+++++++
T Consensus 145 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 145 LPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 8888887633 2345677888888899999999999998886 3333 6788999999999999999999999999999
Q ss_pred CCCCcchHHHHHhHhhhcC
Q 005000 547 DPDNEAVYVLLCNIYAACN 565 (720)
Q Consensus 547 ~p~~~~~~~~l~~~~~~~g 565 (720)
+|+++..+..++.+....|
T Consensus 223 ~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 223 QPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp CTTCHHHHHHHTC------
T ss_pred CcchHHHHHHHHHHHhhcc
Confidence 9999888888776654443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.42 E-value=2.9e-11 Score=118.46 Aligned_cols=206 Identities=13% Similarity=0.068 Sum_probs=155.1
Q ss_pred ccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhh
Q 005000 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDM 392 (720)
Q Consensus 313 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 392 (720)
...|..+...+...|++++|+..|+++.+.. +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------------------------------------~~~~~~~~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID------------------------------------PSSADAHAALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC------------------------------------TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------------------------------------CChHHHHHHHHHH
Confidence 4567777777788888888888887776542 2233445566666
Q ss_pred hhhcCCHHHHHHHHHhcc---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHhcCChhhH
Q 005000 393 YCKCGDVEKAQRVFREML---RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDE-VTYVGVLSACTHTGMVDEG 468 (720)
Q Consensus 393 y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a 468 (720)
|.+.|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++...+..|+. ..+..+...+...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 667777777777776653 235667777788888888888888888888774345543 5677778888889999999
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005000 469 REYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILEL 546 (720)
Q Consensus 469 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (720)
.++++++.+.. +.+...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++|...++++++.
T Consensus 161 ~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 161 KEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99998886432 335778888999999999999999999887 4444 6778888888999999999999999999999
Q ss_pred CCCCcchHHH
Q 005000 547 DPDNEAVYVL 556 (720)
Q Consensus 547 ~p~~~~~~~~ 556 (720)
.|+++.....
T Consensus 239 ~p~~~~~~~~ 248 (252)
T 2ho1_A 239 YPGSLEYQEF 248 (252)
T ss_dssp CTTSHHHHHH
T ss_pred CCCCHHHHHH
Confidence 9998765443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.6e-12 Score=137.81 Aligned_cols=263 Identities=10% Similarity=-0.023 Sum_probs=184.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHHHHc----C-CCCChhHhh
Q 005000 317 TAMIDGYLRVNRFREALTLFREMQTSNIRPDE----FTIVSILTACANLGALELGEWVKTYIDKN----K-VKNDIFVGN 387 (720)
Q Consensus 317 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~i~~~~~~~----~-~~~~~~~~~ 387 (720)
..+...+...|++++|+..|+++.+.+ +.+. ..+..+...+...|+++.|...+..+.+. + .+....++.
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 344555666666666666666666542 1122 24555555566666666666666555432 1 122345667
Q ss_pred HHhhhhhhcCCHHHHHHHHHhccCC---------CHHHHHHHHHHHHHcCC-----------------hHHHHHHHHHHH
Q 005000 388 ALIDMYCKCGDVEKAQRVFREMLRK---------DKFTWTAMIVGLAINGH-----------------GDKSLDMFSQML 441 (720)
Q Consensus 388 ~li~~y~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~l~~~m~ 441 (720)
.+...|...|++++|...|++.... ...+|..+...|...|+ +++|++.+++..
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 7788888888888888888776321 23467778888888888 888888888765
Q ss_pred HC----CCCCC-hHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 005000 442 RA----SIIPD-EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN----EAHYGCMVDLLGRAGHLNEALEVIKNM- 511 (720)
Q Consensus 442 ~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~~- 511 (720)
+. +-.|. ..++..+...+...|++++|..++++..+...-.++ ...+..+...|...|++++|.+.+++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 42 11122 246777888889999999999999887632211112 237788899999999999999999876
Q ss_pred C----CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------cchHHHHHhHhhhcCChhHHHHHHHHHH
Q 005000 512 P----MKP---NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDN------EAVYVLLCNIYAACNRWDNFRELRQMIL 578 (720)
Q Consensus 512 ~----~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 578 (720)
. ... ...++..+...+...|++++|...+++++++.++. ...+..++.+|...|++++|.+.+++..
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1 111 25677888899999999999999999999875432 3488899999999999999999999886
Q ss_pred hC
Q 005000 579 DR 580 (720)
Q Consensus 579 ~~ 580 (720)
+.
T Consensus 371 ~~ 372 (411)
T 4a1s_A 371 QL 372 (411)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.2e-12 Score=134.05 Aligned_cols=264 Identities=11% Similarity=0.005 Sum_probs=179.6
Q ss_pred chHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHc----CCC-CChhH
Q 005000 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPD----EFTIVSILTACANLGALELGEWVKTYIDKN----KVK-NDIFV 385 (720)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~----~~~-~~~~~ 385 (720)
.+......+...|++++|+..|++..+.+ +.+ ...+..+...+...|+++.|...+..+.+. +.. ....+
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 34445555666666666666666665542 112 234445555566666666666665554332 111 12445
Q ss_pred hhHHhhhhhhcCCHHHHHHHHHhccC-----CC----HHHHHHHHHHHHHcCC--------------------hHHHHHH
Q 005000 386 GNALIDMYCKCGDVEKAQRVFREMLR-----KD----KFTWTAMIVGLAINGH--------------------GDKSLDM 436 (720)
Q Consensus 386 ~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~l 436 (720)
+..+...|...|++++|...|++..+ .+ ..++..+...|...|+ +++|++.
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 66777788888888888888876632 12 3467777888888888 8888888
Q ss_pred HHHHHHC----CCCCC-hHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCcc----HHHHHHHHHHHHhcCCHHHHHHH
Q 005000 437 FSQMLRA----SIIPD-EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN----EAHYGCMVDLLGRAGHLNEALEV 507 (720)
Q Consensus 437 ~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~~ 507 (720)
+++.... +-.|. ..++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 249 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 8876542 11122 246777778888899999999998887633221222 34777888889999999999998
Q ss_pred HHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------cchHHHHHhHhhhcCChhHHHHH
Q 005000 508 IKNM----PMKPN----SIVWGALLGACRVHRDAEMAEMAAKQILELDPDN------EAVYVLLCNIYAACNRWDNFREL 573 (720)
Q Consensus 508 ~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~ 573 (720)
+++. +..++ ..++..+...+...|++++|...+++++++.+.. ...+..++.+|...|++++|.+.
T Consensus 250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 329 (406)
T 3sf4_A 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHF 329 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8876 11112 4577888888999999999999999998875432 55788899999999999999999
Q ss_pred HHHHHh
Q 005000 574 RQMILD 579 (720)
Q Consensus 574 ~~~m~~ 579 (720)
+++..+
T Consensus 330 ~~~al~ 335 (406)
T 3sf4_A 330 AEKHLE 335 (406)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888765
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.3e-11 Score=114.69 Aligned_cols=208 Identities=15% Similarity=0.077 Sum_probs=150.9
Q ss_pred CccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhh
Q 005000 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391 (720)
Q Consensus 312 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 391 (720)
+...|..+...+...|++++|+..|+++.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------------------------------------~~~~~~~~~l~~ 50 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD------------------------------------PKNELAWLVRAE 50 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------------------TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC------------------------------------ccchHHHHHHHH
Confidence 34456666666666666666666666665532 223345556666
Q ss_pred hhhhcCCHHHHHHHHHhcc---CCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCChh
Q 005000 392 MYCKCGDVEKAQRVFREML---RKDKFTWTAMIVGLAIN-GHGDKSLDMFSQMLRASIIPD-EVTYVGVLSACTHTGMVD 466 (720)
Q Consensus 392 ~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 466 (720)
.|...|++++|.+.|+++. ..+...|..+...+... |++++|+..|+++.+.+..|+ ...+..+..++...|+++
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 6677777777777776653 23566777788888888 888888888888887433444 356777888888899999
Q ss_pred hHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005000 467 EGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMK--PNSIVWGALLGACRVHRDAEMAEMAAKQI 543 (720)
Q Consensus 467 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 543 (720)
+|...++++.+.. +.+...+..+...|.+.|++++|.+.++++ ... .+...|..+...+...|+.+.+...++.+
T Consensus 131 ~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 131 LAEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 9999998886332 234777888889999999999999998887 222 35667777777889999999999999999
Q ss_pred HhcCCCCcchHHHH
Q 005000 544 LELDPDNEAVYVLL 557 (720)
Q Consensus 544 ~~~~p~~~~~~~~l 557 (720)
.+..|+++.....+
T Consensus 209 ~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 209 QANFPYSEELQTVL 222 (225)
T ss_dssp HHHCTTCHHHHHHH
T ss_pred HHhCCCCHHHHHHh
Confidence 99999987766544
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-11 Score=114.48 Aligned_cols=165 Identities=11% Similarity=0.099 Sum_probs=129.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHH
Q 005000 413 DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD-EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCM 491 (720)
Q Consensus 413 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 491 (720)
+...|..+...|...|++++|++.|++.++. .|+ ..++..+..++...|++++|...+...... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 4566777777788888888888888887774 343 456777777888888888888888877532 23345666777
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhH
Q 005000 492 VDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDN 569 (720)
Q Consensus 492 i~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 569 (720)
...+...+++++|.+.+++. ...| +...|..+...+...|++++|+..++++++++|+++.++..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 77888888888888888776 3344 577888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCC
Q 005000 570 FRELRQMILDRG 581 (720)
Q Consensus 570 a~~~~~~m~~~~ 581 (720)
|.+.+++..+..
T Consensus 160 A~~~~~~al~~~ 171 (184)
T 3vtx_A 160 AVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 999988887643
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.40 E-value=1.5e-11 Score=127.84 Aligned_cols=225 Identities=10% Similarity=0.061 Sum_probs=191.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCC-HHHHHHHHHhccC---CCHHHHHHHHHHH
Q 005000 349 FTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGD-VEKAQRVFREMLR---KDKFTWTAMIVGL 424 (720)
Q Consensus 349 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~~ 424 (720)
..+..+...+...|+++.|...+..+++.. +.+..+|+.+...|.+.|+ +++|+..|++... .+...|+.+...+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 345556667778899999999999999876 5568889999999999997 9999999999853 4788999999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHh-cCCHH
Q 005000 425 AINGHGDKSLDMFSQMLRASIIP-DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR-AGHLN 502 (720)
Q Consensus 425 ~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~g~~~ 502 (720)
...|++++|+..|+++++. .| +...|..+..++...|++++|+..|+++.+.. +-+...|+.+..+|.+ .|..+
T Consensus 177 ~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999985 44 45788999999999999999999999997431 3367889999999999 67667
Q ss_pred HH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcC--------
Q 005000 503 EA-----LEVIKNM-PMKP-NSIVWGALLGACRVHR--DAEMAEMAAKQILELDPDNEAVYVLLCNIYAACN-------- 565 (720)
Q Consensus 503 eA-----~~~~~~~-~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 565 (720)
+| ++.+++. .+.| +...|..+...+...| ++++|...++++ +.+|+++.++..|+++|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 4777776 4556 6789999999999888 689999999998 999999999999999999975
Q ss_pred -ChhHHHHHHHHH-Hh
Q 005000 566 -RWDNFRELRQMI-LD 579 (720)
Q Consensus 566 -~~~~a~~~~~~m-~~ 579 (720)
.+++|.++++++ .+
T Consensus 332 ~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 332 DILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 358999999988 44
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.5e-12 Score=129.04 Aligned_cols=262 Identities=11% Similarity=0.005 Sum_probs=181.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHc----CCC-CChhHhhH
Q 005000 318 AMIDGYLRVNRFREALTLFREMQTSNIRPD----EFTIVSILTACANLGALELGEWVKTYIDKN----KVK-NDIFVGNA 388 (720)
Q Consensus 318 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~----~~~-~~~~~~~~ 388 (720)
.....+...|++++|+..|+++.+.. +.+ ...+..+...+...|+++.|...+..+.+. +.. ....++..
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 34445556666666666666665542 112 234445555556666666666665554332 111 12456677
Q ss_pred HhhhhhhcCCHHHHHHHHHhccC-----CC----HHHHHHHHHHHHHcCC--------------------hHHHHHHHHH
Q 005000 389 LIDMYCKCGDVEKAQRVFREMLR-----KD----KFTWTAMIVGLAINGH--------------------GDKSLDMFSQ 439 (720)
Q Consensus 389 li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~l~~~ 439 (720)
+...|...|++++|...|++..+ .+ ..++..+...|...|+ +++|++.+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 78888888888888888877632 22 3367778888888888 8888888887
Q ss_pred HHHC----CCCCC-hHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 005000 440 MLRA----SIIPD-EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN----EAHYGCMVDLLGRAGHLNEALEVIKN 510 (720)
Q Consensus 440 m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~ 510 (720)
.... +..|. ..++..+...+...|++++|...+++..+...-.++ ...+..+...|.+.|++++|.+.+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6542 11121 246777788888999999999999887532211111 34778888999999999999999887
Q ss_pred C-C---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------cchHHHHHhHhhhcCChhHHHHHHHH
Q 005000 511 M-P---MKPN----SIVWGALLGACRVHRDAEMAEMAAKQILELDPDN------EAVYVLLCNIYAACNRWDNFRELRQM 576 (720)
Q Consensus 511 ~-~---~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~ 576 (720)
. . ..++ ..++..+...+...|++++|...+++++++.|.. ..++..++.+|.+.|++++|.+.+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 6 1 1112 5577888889999999999999999999875442 34788999999999999999999998
Q ss_pred HHhC
Q 005000 577 ILDR 580 (720)
Q Consensus 577 m~~~ 580 (720)
..+.
T Consensus 329 a~~~ 332 (338)
T 3ro2_A 329 HLEI 332 (338)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8764
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.40 E-value=8.4e-10 Score=122.34 Aligned_cols=433 Identities=8% Similarity=-0.002 Sum_probs=284.5
Q ss_pred CchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC---hHHHHH
Q 005000 95 SHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGE---VDMARG 171 (720)
Q Consensus 95 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~---~~~A~~ 171 (720)
...+.+..|++-+..+ +-|..+|..++..+.+.+.++.++.+++.++.. ++.....|...+..-.+.|. ++.+.+
T Consensus 47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 3455666677776655 357889999999998889999999999999985 56677888888888888888 999999
Q ss_pred HHhcCCC-----CCeeeHHHHHHHHHhCCCh--------hHHHHHHHHHHH-CCC-CCC-HhhHHHHHHHHhc-------
Q 005000 172 IFDVSYK-----DDVVTWNAMFSGYKRVKQF--------DETRKLFGEMER-KGV-LPT-SVTIVLVLSACAK------- 228 (720)
Q Consensus 172 ~f~~~~~-----~~~~~~~~li~~~~~~g~~--------~~A~~l~~~m~~-~g~-~p~-~~t~~~ll~~~~~------- 228 (720)
+|++... +++..|...+.-..+.++. +...++|+.... .|. .|+ ...|...+.....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 9986533 6677888877766555543 233467766543 466 554 3455555554332
Q ss_pred --CCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHh
Q 005000 229 --LKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFD 306 (720)
Q Consensus 229 --~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~ 306 (720)
.++++.++.++..++......-..+|......-...+. ..+.+++.+ ....++.|...+.
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e-----------------~~~~y~~Ar~~~~ 266 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGE-----------------LSAQYMNARSLYQ 266 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH-----------------HHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHH-----------------hhHHHHHHHHHHH
Confidence 23456677788777753222222333322221111111 011111111 0112222333322
Q ss_pred h-------CCC--------------C--C------ccchHHHHHHHHhcC-------ChhHHHHHHHHHHHCCCCCCHHH
Q 005000 307 Q-------MPE--------------R--D------YVLWTAMIDGYLRVN-------RFREALTLFREMQTSNIRPDEFT 350 (720)
Q Consensus 307 ~-------~~~--------------~--~------~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~t 350 (720)
. +.. | + ...|...+.---..+ ..+.+..+|++.+.. .+-+...
T Consensus 267 e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~l 345 (679)
T 4e6h_A 267 DWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEI 345 (679)
T ss_dssp HHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHH
T ss_pred HHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHH
Confidence 1 111 0 0 123555554433332 123455677777764 2335566
Q ss_pred HHHHHHHHhccCcHHHHH-HHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccC-------------CC---
Q 005000 351 IVSILTACANLGALELGE-WVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR-------------KD--- 413 (720)
Q Consensus 351 ~~~ll~~~~~~~~~~~a~-~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------------~~--- 413 (720)
+.....-+...|+.+.|. .+++.++.. .+.+...+-.++..+.+.|+++.|.++|+.+.. |+
T Consensus 346 W~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~ 424 (679)
T 4e6h_A 346 WFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNES 424 (679)
T ss_dssp HHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchh
Confidence 666666666778888886 999998874 356677788889999999999999999998753 21
Q ss_pred ---------HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc-CChhhHHHHHHHHHHHcCCCc
Q 005000 414 ---------KFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHT-GMVDEGREYFADMTIQHGIEP 483 (720)
Q Consensus 414 ---------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p 483 (720)
...|...+....+.|+.+.|..+|.+.++.-..+....|...+..-.+. ++++.|..+|+...+.. +.
T Consensus 425 ~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~ 502 (679)
T 4e6h_A 425 AINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--AT 502 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TT
T ss_pred hhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CC
Confidence 2368888888888999999999999998861112233444333333344 45999999999998654 34
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 005000 484 NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP----NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551 (720)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 551 (720)
+...+...++.....|+.+.|..+|++. ...| ....|...+..-..+|+.+.+..+.+++.+..|+++
T Consensus 503 ~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 503 DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 5667788899999999999999999997 2223 356899999999999999999999999999999875
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.5e-11 Score=116.03 Aligned_cols=192 Identities=17% Similarity=0.053 Sum_probs=80.3
Q ss_pred ccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhh
Q 005000 313 YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDM 392 (720)
Q Consensus 313 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 392 (720)
...|..+...+.+.|++++|+..|++..+.. +.+...+..+...+.+.|+++.|...+..+++.. +.+...+..+...
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEA 82 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3345555555555556666665555555432 2233333333344444444444444444444332 2233334444444
Q ss_pred hhhc-----------CCHHHHHHHHHhccC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 005000 393 YCKC-----------GDVEKAQRVFREMLR--K-DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSA 458 (720)
Q Consensus 393 y~~~-----------g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 458 (720)
|.+. |++++|...|++..+ | +...|..+...+...|++++|+..|++.++.. .+...+..+..+
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~ 160 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHH
Confidence 4444 455555555544421 1 33444444444555555555555555544443 334444444444
Q ss_pred HHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 005000 459 CTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKN 510 (720)
Q Consensus 459 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~ 510 (720)
+...|++++|+..|+++.+. -+.+...+..+..+|.+.|++++|.+.+++
T Consensus 161 ~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC-------------
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 44555555555555444321 111233444444444444444444444443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=9e-12 Score=123.79 Aligned_cols=237 Identities=11% Similarity=-0.079 Sum_probs=114.8
Q ss_pred CCchHHHHHHHHhHhCCCC---CCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHH
Q 005000 94 DSHKNGVLIYLDMLKSDVR---PDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMAR 170 (720)
Q Consensus 94 g~~~~A~~l~~~m~~~g~~---p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 170 (720)
|++++|+..|+++.+.... .+..++..+...+...|++++|...+..+++.. +.+..++..+...|...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 4444555555554443210 022334444444445555555555555555433 223445555555555555555555
Q ss_pred HHHhcCC---CCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCC
Q 005000 171 GIFDVSY---KDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKI 247 (720)
Q Consensus 171 ~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 247 (720)
+.|+... ..+..+|..+...|.+.|++++|+..|+++... .|+.......+..+...|+++.|...+....+...
T Consensus 98 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 175 (275)
T 1xnf_A 98 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD 175 (275)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 5555432 224455666666666666666666666666553 34433333344444555666666666666555422
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-------chhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccchHHHH
Q 005000 248 VPNLILENALTDMYAACGEMGFALEIFGNIKNKD-------VISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMI 320 (720)
Q Consensus 248 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li 320 (720)
++...+ .++..+...++.++|...+++....+ ...|..+...|.+.|++++|...|++....++..+....
T Consensus 176 -~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 253 (275)
T 1xnf_A 176 -KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 253 (275)
T ss_dssp -CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred -cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHHH
Confidence 222222 25555666666666666666655432 233444444444444444444444444433333333334
Q ss_pred HHHHhcCChhHHHHH
Q 005000 321 DGYLRVNRFREALTL 335 (720)
Q Consensus 321 ~~~~~~g~~~~A~~~ 335 (720)
.++...|++++|++.
T Consensus 254 ~~~~~l~~~~~a~~~ 268 (275)
T 1xnf_A 254 YALLELSLLGQDQDD 268 (275)
T ss_dssp HHHHHHHHHHHC---
T ss_pred HHHHHHHHHHhhHHH
Confidence 444444444444433
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.9e-11 Score=127.53 Aligned_cols=294 Identities=12% Similarity=0.039 Sum_probs=177.7
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHcCCCCC---hHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcC
Q 005000 220 VLVLSACAKLKDLDVGKRAHRYVKECKIVPN---LILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRG 296 (720)
Q Consensus 220 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 296 (720)
......+...|++++|...++.+++...... ..++..+...|...|++++|...|++.
T Consensus 13 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a------------------- 73 (406)
T 3sf4_A 13 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHD------------------- 73 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-------------------
Confidence 3333444455555555555555555422110 234555666666777777776666542
Q ss_pred CHHHHHHHHhhCCCC--CccchHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 005000 297 QVDMARQYFDQMPER--DYVLWTAMIDGYLRVNRFREALTLFREMQTSNI-RPDEFTIVSILTACANLGALELGEWVKTY 373 (720)
Q Consensus 297 ~~~~A~~~f~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~~~~~a~~i~~~ 373 (720)
..+......+ ...+|..+...|...|++++|+..+++...... .++...
T Consensus 74 -----l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----------------------- 125 (406)
T 3sf4_A 74 -----LTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG----------------------- 125 (406)
T ss_dssp -----HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH-----------------------
T ss_pred -----HHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccc-----------------------
Confidence 1122222111 134567777788888888888888877654210 011000
Q ss_pred HHHcCCCCChhHhhHHhhhhhhcCC--------------------HHHHHHHHHhccC-----C----CHHHHHHHHHHH
Q 005000 374 IDKNKVKNDIFVGNALIDMYCKCGD--------------------VEKAQRVFREMLR-----K----DKFTWTAMIVGL 424 (720)
Q Consensus 374 ~~~~~~~~~~~~~~~li~~y~~~g~--------------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~ 424 (720)
...++..+...|...|+ +++|...|++... . ...+|..+...|
T Consensus 126 --------~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 197 (406)
T 3sf4_A 126 --------EARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTH 197 (406)
T ss_dssp --------HHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred --------hHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 01123333334444444 4444444443311 1 133566677777
Q ss_pred HHcCChHHHHHHHHHHHHCCC-CCC----hHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCcc----HHHHHHHHHHH
Q 005000 425 AINGHGDKSLDMFSQMLRASI-IPD----EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN----EAHYGCMVDLL 495 (720)
Q Consensus 425 ~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~ 495 (720)
...|++++|+..|++..+... .++ ..++..+...+...|++++|...+++......-.++ ...+..+...|
T Consensus 198 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 277 (406)
T 3sf4_A 198 YLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTY 277 (406)
T ss_dssp HHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHH
Confidence 778888888888877665210 112 136777777888888888888888876532211111 55777888899
Q ss_pred HhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CCcchHHHHHhHh
Q 005000 496 GRAGHLNEALEVIKNM----PMKPN----SIVWGALLGACRVHRDAEMAEMAAKQILELDP------DNEAVYVLLCNIY 561 (720)
Q Consensus 496 ~~~g~~~eA~~~~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~ 561 (720)
.+.|++++|.+.+++. +..++ ..++..+...+...|++++|...+++++++.+ ....++..++.+|
T Consensus 278 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 357 (406)
T 3sf4_A 278 TLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQ 357 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHH
Confidence 9999999999988876 11122 55778888999999999999999999988733 2356778888898
Q ss_pred hhcCChh
Q 005000 562 AACNRWD 568 (720)
Q Consensus 562 ~~~g~~~ 568 (720)
...|+..
T Consensus 358 ~~~g~~~ 364 (406)
T 3sf4_A 358 MVLGLSY 364 (406)
T ss_dssp HHHHTTS
T ss_pred HHhhHhH
Confidence 8888764
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=5.9e-12 Score=135.85 Aligned_cols=207 Identities=10% Similarity=-0.057 Sum_probs=173.9
Q ss_pred HHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCH-HHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005000 365 ELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDV-EKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQM 440 (720)
Q Consensus 365 ~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m 440 (720)
+.+.+.+....+.. +.+...+..+...|...|++ ++|.+.|++..+ .+...|..+...|...|++++|++.|++.
T Consensus 85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444433322 34677788888888999999 999999988742 35778999999999999999999999999
Q ss_pred HHCCCCCChHHHHHHHHHHHhc---------CChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc--------CCHHH
Q 005000 441 LRASIIPDEVTYVGVLSACTHT---------GMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRA--------GHLNE 503 (720)
Q Consensus 441 ~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~--------g~~~e 503 (720)
.+. .|+...+..+..++... |++++|.+.|+++.+.. +.+...|..+..+|... |++++
T Consensus 164 l~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 164 LTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred Hhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 985 57778888888899999 99999999999987432 33578889999999998 99999
Q ss_pred HHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHH
Q 005000 504 ALEVIKNM-PMKP----NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQM 576 (720)
Q Consensus 504 A~~~~~~~-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 576 (720)
|++.|++. ...| +...|..+..++...|++++|...++++++++|+++.++..++.++...|++++|.+.+.+
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999987 4455 7889999999999999999999999999999999999999999999999999999976543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.32 E-value=6.2e-11 Score=109.95 Aligned_cols=167 Identities=13% Similarity=0.064 Sum_probs=143.7
Q ss_pred ChhHhhHHhhhhhhcCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 005000 382 DIFVGNALIDMYCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSA 458 (720)
Q Consensus 382 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 458 (720)
+..+|..|...|.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++|+..+.+..... +-+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 567889999999999999999999998753 377899999999999999999999999998853 2244567777788
Q ss_pred HHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 005000 459 CTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMA 536 (720)
Q Consensus 459 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 536 (720)
+...++++.+...+...... .+.+...+..+...|.+.|++++|++.|++. ...| +..+|..+..++...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 89999999999999988632 2345778889999999999999999999987 4555 688999999999999999999
Q ss_pred HHHHHHHHhcCCCCc
Q 005000 537 EMAAKQILELDPDNE 551 (720)
Q Consensus 537 ~~~~~~~~~~~p~~~ 551 (720)
+..++++++++|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999999863
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=3.9e-11 Score=134.64 Aligned_cols=162 Identities=15% Similarity=0.230 Sum_probs=134.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCc-cHHHHHH
Q 005000 413 DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD-EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP-NEAHYGC 490 (720)
Q Consensus 413 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 490 (720)
+..+|+.+...|.+.|++++|++.|++.++. .|+ ..++..+..++.+.|++++|++.|++..+ +.| +...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence 3557777888888888888888888888774 455 46778888888888888888888888763 234 4678888
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChh
Q 005000 491 MVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWD 568 (720)
Q Consensus 491 li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 568 (720)
+..+|.+.|++++|++.|++. .+.| +...|..+..++...|++++|+..++++++++|+++.++..|+.+|...|+|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 888899999999999988886 5556 57889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 005000 569 NFRELRQMILD 579 (720)
Q Consensus 569 ~a~~~~~~m~~ 579 (720)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988877654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.1e-10 Score=123.70 Aligned_cols=269 Identities=14% Similarity=0.082 Sum_probs=157.9
Q ss_pred HHhcCCCchHHHHHHHHHHHcCCCCCh----HHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHH
Q 005000 225 ACAKLKDLDVGKRAHRYVKECKIVPNL----ILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDM 300 (720)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 300 (720)
.+...|++++|...++.+++.... +. .++..+...|...|++++|...|++..
T Consensus 57 ~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---------------------- 113 (411)
T 4a1s_A 57 RLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDL---------------------- 113 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH----------------------
T ss_pred HHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH----------------------
Confidence 344445555555555555444221 11 345556666667777777776666422
Q ss_pred HHHHHhhCCCC--CccchHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 005000 301 ARQYFDQMPER--DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIR-PDEFTIVSILTACANLGALELGEWVKTYIDKN 377 (720)
Q Consensus 301 A~~~f~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~ 377 (720)
++.+..... ...+|..+...|...|++++|+..|++....... .+.
T Consensus 114 --~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------------------------- 162 (411)
T 4a1s_A 114 --TLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDR----------------------------- 162 (411)
T ss_dssp --HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-----------------------------
T ss_pred --HHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhch-----------------------------
Confidence 222222111 2345667777778888888888887776542100 000
Q ss_pred CCCCChhHhhHHhhhhhhcCC-----------------HHHHHHHHHhccC-------C--CHHHHHHHHHHHHHcCChH
Q 005000 378 KVKNDIFVGNALIDMYCKCGD-----------------VEKAQRVFREMLR-------K--DKFTWTAMIVGLAINGHGD 431 (720)
Q Consensus 378 ~~~~~~~~~~~li~~y~~~g~-----------------~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~ 431 (720)
+....++..+...|...|+ +++|.+.|++..+ + ....|..+...|...|+++
T Consensus 163 --~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 240 (411)
T 4a1s_A 163 --LSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQ 240 (411)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred --HHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChH
Confidence 0011223333444444444 4444444443311 0 2235666667777777777
Q ss_pred HHHHHHHHHHHCCC-CCC----hHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCC----ccHHHHHHHHHHHHhcCCHH
Q 005000 432 KSLDMFSQMLRASI-IPD----EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIE----PNEAHYGCMVDLLGRAGHLN 502 (720)
Q Consensus 432 ~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~----p~~~~~~~li~~~~~~g~~~ 502 (720)
+|++.|++..+... .++ ..++..+...+...|++++|...+++......-. .....+..+...|.+.|+++
T Consensus 241 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 320 (411)
T 4a1s_A 241 AAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFN 320 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 77777777655211 011 1266677778888888888888887765322111 12467778888889999999
Q ss_pred HHHHHHHhC-CC------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005000 503 EALEVIKNM-PM------KP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPD 549 (720)
Q Consensus 503 eA~~~~~~~-~~------~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 549 (720)
+|.+.+++. .. .+ ...++..+...+...|++++|...+++++++.+.
T Consensus 321 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 321 TAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 998888876 11 11 2447778888999999999999999999988764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.2e-09 Score=110.60 Aligned_cols=219 Identities=9% Similarity=0.013 Sum_probs=152.9
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-------ccCcH-------HHHHHHHHHHHHcCCCCChhHhhHHhhhhhh
Q 005000 330 REALTLFREMQTSNIRPDEFTIVSILTACA-------NLGAL-------ELGEWVKTYIDKNKVKNDIFVGNALIDMYCK 395 (720)
Q Consensus 330 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~ 395 (720)
++|+..|++..... +-+...+......+. ..|+. +.|..++..+++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56677777776642 234444444444443 23553 7777777777773224456678888888888
Q ss_pred cCCHHHHHHHHHhccC--C-CHH-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHH-hcCChhhHHH
Q 005000 396 CGDVEKAQRVFREMLR--K-DKF-TWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACT-HTGMVDEGRE 470 (720)
Q Consensus 396 ~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~ 470 (720)
.|++++|.++|++..+ | +.. .|..++..+.+.|+.++|..+|++.++.. +++...|........ ..|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888753 2 333 78888888888888888888888888753 233344544333322 3688888888
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005000 471 YFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-P---MKP--NSIVWGALLGACRVHRDAEMAEMAAKQIL 544 (720)
Q Consensus 471 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~---~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 544 (720)
+|+...+.. +.+...|..+++.+.+.|++++|..+|++. . +.| ....|..++......|+.+.|..++++++
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888876443 235677888888888888888888888887 2 344 46688888888888888888888888888
Q ss_pred hcCCCCcc
Q 005000 545 ELDPDNEA 552 (720)
Q Consensus 545 ~~~p~~~~ 552 (720)
+..|++..
T Consensus 269 ~~~p~~~~ 276 (308)
T 2ond_A 269 TAFREEYE 276 (308)
T ss_dssp HHTTTTTS
T ss_pred HHcccccc
Confidence 88887543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=6.3e-11 Score=119.86 Aligned_cols=233 Identities=13% Similarity=0.082 Sum_probs=159.4
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHc-------CCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccC-------C
Q 005000 347 DEFTIVSILTACANLGALELGEWVKTYIDKN-------KVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR-------K 412 (720)
Q Consensus 347 ~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~-------~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~ 412 (720)
+..++..+...+...|+++.|..++..+.+. ..+....++..+...|...|++++|...|++... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3456777777888889999999888887763 2334466778888888899999999888887642 1
Q ss_pred ----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCCh-HHHHHHHHHHHhcCChhhHHHHHHHHHHHc--
Q 005000 413 ----DKFTWTAMIVGLAINGHGDKSLDMFSQMLRA------SIIPDE-VTYVGVLSACTHTGMVDEGREYFADMTIQH-- 479 (720)
Q Consensus 413 ----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-- 479 (720)
...+|..+...|...|++++|++.|+++.+. +-.|+. ..+..+...+...|++++|.++++++....
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2456778888888899999999999888764 222332 467777788888899999999988876421
Q ss_pred ---CCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhCC----------CCCC-------HHHHHHHHHHHHhcCCHHHHHH
Q 005000 480 ---GIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNMP----------MKPN-------SIVWGALLGACRVHRDAEMAEM 538 (720)
Q Consensus 480 ---~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~~----------~~p~-------~~~~~~ll~~~~~~g~~~~a~~ 538 (720)
+..| ....+..+...|.+.|++++|.+.++++- ..|. ...+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1122 34567788888899999999988887761 1111 1112222233445555666667
Q ss_pred HHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 539 AAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 539 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
.++++....|..+.++..++.+|.+.|++++|.+.+++..+
T Consensus 266 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777777888889999999999999999999999998765
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.4e-10 Score=116.67 Aligned_cols=134 Identities=12% Similarity=0.073 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----hHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCcc----HH
Q 005000 416 TWTAMIVGLAINGHGDKSLDMFSQMLRASI-IPD----EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN----EA 486 (720)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~ 486 (720)
.+..+...+...|++++|++.+++..+... .++ ..++..+...+...|++++|..++++......-.++ ..
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 455555666666666666666666544210 011 125666666777777777777777766432111111 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005000 487 HYGCMVDLLGRAGHLNEALEVIKNM-PM---KPN----SIVWGALLGACRVHRDAEMAEMAAKQILELDPD 549 (720)
Q Consensus 487 ~~~~li~~~~~~g~~~eA~~~~~~~-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 549 (720)
.+..+...|...|++++|.+.+++. .. .++ ..++..+...+...|++++|...+++++++.+.
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 6677778888888888888887765 11 111 446777888889999999999999999887664
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.9e-11 Score=122.37 Aligned_cols=235 Identities=11% Similarity=0.048 Sum_probs=145.3
Q ss_pred chHHHHHHHHhcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHc------C-CC
Q 005000 315 LWTAMIDGYLRVNRFREALTLFREMQTS-------NIRPDEFTIVSILTACANLGALELGEWVKTYIDKN------K-VK 380 (720)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~------~-~~ 380 (720)
+|..+...|...|++++|+.+|+++.+. ........+..+...+...|+++.|...+..+.+. + .+
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 4555556666666666666666665542 11222334455555566666666666666655543 1 12
Q ss_pred CChhHhhHHhhhhhhcCCHHHHHHHHHhccCC-----------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC------
Q 005000 381 NDIFVGNALIDMYCKCGDVEKAQRVFREMLRK-----------DKFTWTAMIVGLAINGHGDKSLDMFSQMLRA------ 443 (720)
Q Consensus 381 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------ 443 (720)
....++..+...|...|++++|...|++..+. ....|..+...+...|++++|++.|+++...
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 23556677788888888888888888776421 2446777888888889999999998888764
Q ss_pred CCCCCh-HHHHHHHHHHHhcCChhhHHHHHHHHHHHc------CCCc-------cHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005000 444 SIIPDE-VTYVGVLSACTHTGMVDEGREYFADMTIQH------GIEP-------NEAHYGCMVDLLGRAGHLNEALEVIK 509 (720)
Q Consensus 444 g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p-------~~~~~~~li~~~~~~g~~~eA~~~~~ 509 (720)
+..|+. .++..+...+...|++++|..+++++.+.. ...+ ....+..+...+...+.+.+|...++
T Consensus 189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 268 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYK 268 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC----
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHh
Confidence 223333 467778888889999999999998876321 1111 12233334444556666667777777
Q ss_pred hCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005000 510 NMP-MKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPD 549 (720)
Q Consensus 510 ~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 549 (720)
... ..| +..+|..+...+...|++++|...+++++++.|+
T Consensus 269 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 269 ACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -----CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 663 334 4668889999999999999999999999998775
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.1e-10 Score=110.54 Aligned_cols=188 Identities=12% Similarity=-0.024 Sum_probs=94.1
Q ss_pred hhHhhHHhhhhhhcCCHHHHHHHHHhccC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-HHHHHHHH
Q 005000 383 IFVGNALIDMYCKCGDVEKAQRVFREMLR----KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDE-VTYVGVLS 457 (720)
Q Consensus 383 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~ 457 (720)
+..+..+...|.+.|++++|...|++..+ ++...|..+...+...|++++|++.|++..+. .|+. ..+..+..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 84 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHH
Confidence 34555555555666666666666655421 44445555555555566666666666655553 3332 34555555
Q ss_pred HHHhcCChhhHHHHHHHHHHHcCCCccH-----HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHH
Q 005000 458 ACTHTGMVDEGREYFADMTIQHGIEPNE-----AHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN---SIVWGALLGACR 528 (720)
Q Consensus 458 a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~---~~~~~~ll~~~~ 528 (720)
++...|++++|...+++..+...-.+.. ..|..+...+.+.|++++|++.+++. ...|+ ...|..+...+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 5555566666666665554221111111 33445555555555555555555554 33443 234444444443
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 529 VHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 529 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
. .+...++++..+.+.++..|.. ......+.+++|...+++..+
T Consensus 165 ~-----~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 165 N-----NGADVLRKATPLASSNKEKYAS--EKAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp H-----HHHHHHHHHGGGTTTCHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHhcccCCHHHHHH--HHHHHHHHHHHHHHHHHHHhh
Confidence 2 2333344445554444333222 223334455888888887765
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.23 E-value=5.1e-10 Score=107.79 Aligned_cols=205 Identities=10% Similarity=0.055 Sum_probs=161.7
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCC---CHHHHHHHHH
Q 005000 346 PDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK---DKFTWTAMIV 422 (720)
Q Consensus 346 p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~ 422 (720)
.|...+......+...|+++.|...+..+++...+++...+..+...|.+.|++++|...|++..+. +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 4567777888889999999999999999999875477777777999999999999999999988533 5678999999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCC-h-------HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCcc---HHHHHHH
Q 005000 423 GLAINGHGDKSLDMFSQMLRASIIPD-E-------VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN---EAHYGCM 491 (720)
Q Consensus 423 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~l 491 (720)
.|...|++++|++.|++..+. .|+ . ..|..+...+...|++++|++.|+++. .+.|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHH
Confidence 999999999999999999985 444 3 357777788899999999999999885 45665 5678888
Q ss_pred HHHHHhcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhh
Q 005000 492 VDLLGRAGHL--NEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYA 562 (720)
Q Consensus 492 i~~~~~~g~~--~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 562 (720)
...|...|+. ++|..+. ..+...+.... ....+.+++|...++++++++|+++.+...+..+..
T Consensus 160 ~~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 8888776654 3332221 12344444433 345567899999999999999999888887776654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.23 E-value=2e-10 Score=123.82 Aligned_cols=178 Identities=13% Similarity=0.081 Sum_probs=157.6
Q ss_pred CHHHHHHHHHhcc---CCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCChhhHHHHH
Q 005000 398 DVEKAQRVFREML---RKDKFTWTAMIVGLAINGHG-DKSLDMFSQMLRASIIPD-EVTYVGVLSACTHTGMVDEGREYF 472 (720)
Q Consensus 398 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~ 472 (720)
.++++...+++.. ..+...|..+...|...|++ ++|++.|++.++. .|+ ...+..+..++...|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3666777776653 23678899999999999999 9999999999985 444 578999999999999999999999
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHhc---------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------CCH
Q 005000 473 ADMTIQHGIEPNEAHYGCMVDLLGRA---------GHLNEALEVIKNM-PMKP-NSIVWGALLGACRVH--------RDA 533 (720)
Q Consensus 473 ~~m~~~~~~~p~~~~~~~li~~~~~~---------g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~--------g~~ 533 (720)
++.. .+.|+...+..+...|.+. |++++|++.+++. ...| +...|..+..++... |++
T Consensus 161 ~~al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGAL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 9986 4568888999999999999 9999999999997 4455 688999999999998 999
Q ss_pred HHHHHHHHHHHhcCC---CCcchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 534 EMAEMAAKQILELDP---DNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 534 ~~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
++|...++++++++| +++..+..++.+|...|++++|.+.+++..+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999 99999999999999999999999999998764
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.23 E-value=4.3e-10 Score=117.84 Aligned_cols=221 Identities=8% Similarity=-0.045 Sum_probs=130.5
Q ss_pred HhccCcHHHHHHHHHHHHHc----CCCC-ChhHhhHHhhhhhhcCCHHHHHHHHHhccC-----C-----CHHHHHHHHH
Q 005000 358 CANLGALELGEWVKTYIDKN----KVKN-DIFVGNALIDMYCKCGDVEKAQRVFREMLR-----K-----DKFTWTAMIV 422 (720)
Q Consensus 358 ~~~~~~~~~a~~i~~~~~~~----~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~li~ 422 (720)
+...|+++.|...+..+.+. +-.+ ...++..+...|...|++++|...+++..+ + ...+++.+..
T Consensus 113 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 192 (383)
T 3ulq_A 113 ELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFAT 192 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 33445555555555544432 1011 134455666666666666666666665521 1 1235666667
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCC-CCh----HHHHHHHHHHHhcCChhhHHHHHHHHHHH---cCC-CccHHHHHHHHH
Q 005000 423 GLAINGHGDKSLDMFSQMLRASII-PDE----VTYVGVLSACTHTGMVDEGREYFADMTIQ---HGI-EPNEAHYGCMVD 493 (720)
Q Consensus 423 ~~~~~g~~~~A~~l~~~m~~~g~~-p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~-~p~~~~~~~li~ 493 (720)
.|...|++++|++.|++..+.... ++. .++..+...+...|++++|.+.+++..+- .+. +....++..+..
T Consensus 193 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 272 (383)
T 3ulq_A 193 NFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQ 272 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 777777777777777776542111 111 35666777777777777777777776531 122 223556777777
Q ss_pred HHHhcCCHHHHHHHHHhC-CC-----CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCcchHHHHHhHhhh
Q 005000 494 LLGRAGHLNEALEVIKNM-PM-----KPN-SIVWGALLGACRVHRD---AEMAEMAAKQILELDPDNEAVYVLLCNIYAA 563 (720)
Q Consensus 494 ~~~~~g~~~eA~~~~~~~-~~-----~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 563 (720)
.|.+.|++++|.+.+++. .. .|. ...+..+...+...|+ +++|...+++. ...|.....+..++.+|..
T Consensus 273 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~ 351 (383)
T 3ulq_A 273 IHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHE 351 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHH
Confidence 777778877777777765 11 121 2234555666777777 56666666554 2233444567778888888
Q ss_pred cCChhHHHHHHHHHHh
Q 005000 564 CNRWDNFRELRQMILD 579 (720)
Q Consensus 564 ~g~~~~a~~~~~~m~~ 579 (720)
.|++++|.+.+++..+
T Consensus 352 ~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 352 RKNFQKASAYFLKVEQ 367 (383)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 8888888888777754
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.23 E-value=4.7e-09 Score=109.40 Aligned_cols=262 Identities=11% Similarity=0.007 Sum_probs=179.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCcHHHHHHHHHHHHHcCCC-CC----hhHhhH
Q 005000 318 AMIDGYLRVNRFREALTLFREMQTSNIRPDEF----TIVSILTACANLGALELGEWVKTYIDKNKVK-ND----IFVGNA 388 (720)
Q Consensus 318 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~-~~----~~~~~~ 388 (720)
.....+...|++++|...+++.....-..+.. .+..+...+...|+++.|...+....+.... .+ ..++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 33445566777777777777766543222222 3344445566677777777777665542111 11 223566
Q ss_pred HhhhhhhcCCHHHHHHHHHhccC----------C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--C--ChHHHH
Q 005000 389 LIDMYCKCGDVEKAQRVFREMLR----------K-DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII--P--DEVTYV 453 (720)
Q Consensus 389 li~~y~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p--~~~t~~ 453 (720)
+...|...|++++|...+++... + ....+..+...+...|++++|...+++....... | ...++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 77888889999999988887632 1 1235666778889999999999999998764322 1 124677
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHH-----HHHHHHHhcCCHHHHHHHHHhCC-CCCC-----HHHHHH
Q 005000 454 GVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYG-----CMVDLLGRAGHLNEALEVIKNMP-MKPN-----SIVWGA 522 (720)
Q Consensus 454 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-----~li~~~~~~g~~~eA~~~~~~~~-~~p~-----~~~~~~ 522 (720)
.+...+...|++++|...+++......-......+. ..+..+...|++++|...+++.. ..|. ...+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 778888999999999999998864322111111121 23455789999999999999872 2221 335677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCC------cchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 523 LLGACRVHRDAEMAEMAAKQILELDPDN------EAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 523 ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
+...+...|++++|...++++++..+.. ...+..++.+|...|++++|.+.++....
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7888999999999999999998764321 23677889999999999999999888765
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.23 E-value=3.1e-10 Score=104.80 Aligned_cols=162 Identities=16% Similarity=0.036 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 005000 416 TWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLL 495 (720)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 495 (720)
.|..+...+...|++++|+..|+++.... +.+...+..+...+...|++++|..+++.+.+. .+.+...+..+...|
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 34444555555666666666665554431 223445555666666666666666666666532 123455666666777
Q ss_pred HhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHH
Q 005000 496 GRAGHLNEALEVIKNM-PM-KPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFREL 573 (720)
Q Consensus 496 ~~~g~~~eA~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 573 (720)
...|++++|.+.++++ .. +.+...|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777777665 22 235667777777888888888888888888888888888888888888888888888888
Q ss_pred HHHHHhC
Q 005000 574 RQMILDR 580 (720)
Q Consensus 574 ~~~m~~~ 580 (720)
++.+.+.
T Consensus 167 ~~~~~~~ 173 (186)
T 3as5_A 167 FKKANEL 173 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 8777653
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.8e-09 Score=111.63 Aligned_cols=165 Identities=10% Similarity=0.098 Sum_probs=126.5
Q ss_pred hHhhHHhhhhhhcCCHHHHHHHHHhccC-----CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-h
Q 005000 384 FVGNALIDMYCKCGDVEKAQRVFREMLR-----KD----KFTWTAMIVGLAINGHGDKSLDMFSQMLRA----SIIPD-E 449 (720)
Q Consensus 384 ~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~ 449 (720)
.+++.+...|...|++++|...|++..+ ++ ..++..+...|...|++++|++.|++..+. +..|+ .
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 4566777888888888888888877642 12 247788888999999999999999988762 23233 3
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHc---CCCccHHHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCC-HHHHHH
Q 005000 450 VTYVGVLSACTHTGMVDEGREYFADMTIQH---GIEPNEAHYGCMVDLLGRAGH---LNEALEVIKNMPMKPN-SIVWGA 522 (720)
Q Consensus 450 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~~~~~~~li~~~~~~g~---~~eA~~~~~~~~~~p~-~~~~~~ 522 (720)
.++..+...+...|++++|...+++..+.. +-+.....+..+...|...|+ +++|+.++++.+..|+ ...+..
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~ 344 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 578888889999999999999998876322 112223346678888999999 9999999999865553 446778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCC
Q 005000 523 LLGACRVHRDAEMAEMAAKQILELDP 548 (720)
Q Consensus 523 ll~~~~~~g~~~~a~~~~~~~~~~~p 548 (720)
+...+...|++++|...+++++++..
T Consensus 345 la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 88999999999999999999987643
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.21 E-value=1.5e-09 Score=109.89 Aligned_cols=212 Identities=8% Similarity=0.022 Sum_probs=170.7
Q ss_pred HHHHHHHHHHHHcCCCCChhHhhHHhhhhh-------hcCCH-------HHHHHHHHhccC---C-CHHHHHHHHHHHHH
Q 005000 365 ELGEWVKTYIDKNKVKNDIFVGNALIDMYC-------KCGDV-------EKAQRVFREMLR---K-DKFTWTAMIVGLAI 426 (720)
Q Consensus 365 ~~a~~i~~~~~~~~~~~~~~~~~~li~~y~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~ 426 (720)
+.|..+++.+++.. +.+..+|..++..+. +.|++ ++|..+|++... | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56667777777653 566778888887776 35885 999999998754 2 56789999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCh-H-HHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHH-hcCCHHH
Q 005000 427 NGHGDKSLDMFSQMLRASIIPDE-V-TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLG-RAGHLNE 503 (720)
Q Consensus 427 ~g~~~~A~~l~~~m~~~g~~p~~-~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~-~~g~~~e 503 (720)
.|++++|.++|++.++. .|+. . .|..+...+.+.|++++|..+|++..+ . .+++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-~-~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE-D-ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT-S-TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh-c-CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999984 5654 3 788899999999999999999999872 2 1334555554444432 3799999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC-CcchHHHHHhHhhhcCChhHHHHHHHHH
Q 005000 504 ALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILEL---DPD-NEAVYVLLCNIYAACNRWDNFRELRQMI 577 (720)
Q Consensus 504 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m 577 (720)
|.++|++. ...| +...|..++..+...|++++|..+++++++. .|+ ....+..++..+.+.|++++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999987 3334 6889999999999999999999999999996 553 5678888999999999999999999998
Q ss_pred HhCC
Q 005000 578 LDRG 581 (720)
Q Consensus 578 ~~~~ 581 (720)
.+..
T Consensus 268 ~~~~ 271 (308)
T 2ond_A 268 FTAF 271 (308)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 7654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.20 E-value=2.4e-08 Score=110.73 Aligned_cols=430 Identities=8% Similarity=0.022 Sum_probs=284.2
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCeeeHHHHHHHHHhCCC---hhHHHHHHHHHH
Q 005000 135 KELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK---DDVVTWNAMFSGYKRVKQ---FDETRKLFGEME 208 (720)
Q Consensus 135 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~ 208 (720)
...++..+... +.|...|..++..+.+.+.++.|+.+|+.+.. .....|...+..-.+.|+ ++.+..+|++..
T Consensus 52 i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal 130 (679)
T 4e6h_A 52 IGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCL 130 (679)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Confidence 33445555544 46899999999999999999999999997754 355678888888888898 999999999988
Q ss_pred HCC-CCCCHhhHHHHHHHHhcCCCc--------hHHHHHHHHHHH-cCC-CCC-hHHHHHHHHHHHh---------cCCH
Q 005000 209 RKG-VLPTSVTIVLVLSACAKLKDL--------DVGKRAHRYVKE-CKI-VPN-LILENALTDMYAA---------CGEM 267 (720)
Q Consensus 209 ~~g-~~p~~~t~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~li~~y~~---------~g~~ 267 (720)
... ..|+...|..-+....+.++. +...++|+.++. .|. .++ ..+|...+..... .+++
T Consensus 131 ~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~ 210 (679)
T 4e6h_A 131 SKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRV 210 (679)
T ss_dssp CSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHH
Confidence 763 247887888777766555543 334577777665 465 553 5688888776543 3456
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHH--CCCC
Q 005000 268 GFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQT--SNIR 345 (720)
Q Consensus 268 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~ 345 (720)
+.+.++|++...-....+..+-..|.. ++.. + +..+-..++.- ...+++.|...+.++.. .++.
T Consensus 211 ~~~R~iy~raL~iP~~~~~~~w~~Y~~---fe~~---~------~~~~a~~~~~e--~~~~y~~Ar~~~~e~~~~~~~l~ 276 (679)
T 4e6h_A 211 QYIRKLYKTLLCQPMDCLESMWQRYTQ---WEQD---V------NQLTARRHIGE--LSAQYMNARSLYQDWLNITKGLK 276 (679)
T ss_dssp HHHHHHHHHHTTSCCSSHHHHHHHHHH---HHHH---H------CTTTHHHHHHH--HHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHH---HHHh---c------CcchHHHHHHH--hhHHHHHHHHHHHHHHHHHHhHh
Confidence 778888888775222112222222211 0000 0 11111111111 11234445555544321 1111
Q ss_pred ---------------C-----CH---HHHHHHHHHHhccC-------cHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhh
Q 005000 346 ---------------P-----DE---FTIVSILTACANLG-------ALELGEWVKTYIDKNKVKNDIFVGNALIDMYCK 395 (720)
Q Consensus 346 ---------------p-----~~---~t~~~ll~~~~~~~-------~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~ 395 (720)
| +. ..|...+.---..+ ..+....+++.++... +.+..+|-..+..+.+
T Consensus 277 r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~ 355 (679)
T 4e6h_A 277 RNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGE 355 (679)
T ss_dssp CCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHH
T ss_pred hccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHh
Confidence 1 11 12222222111111 1234456677777653 5567788888888888
Q ss_pred cCCHHHHH-HHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---------CCC------------hH
Q 005000 396 CGDVEKAQ-RVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASI---------IPD------------EV 450 (720)
Q Consensus 396 ~g~~~~A~-~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---------~p~------------~~ 450 (720)
.|+.++|. .+|+.... .+...|-..+....+.|+.++|.++|++++.... .|+ ..
T Consensus 356 ~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~ 435 (679)
T 4e6h_A 356 KNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTY 435 (679)
T ss_dssp HSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHH
Confidence 99999996 99988743 3666788888889999999999999999886410 142 23
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC-CHHHHHHHHHhC--CCCCCHHHHHHHHHHH
Q 005000 451 TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAG-HLNEALEVIKNM--PMKPNSIVWGALLGAC 527 (720)
Q Consensus 451 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-~~~eA~~~~~~~--~~~p~~~~~~~ll~~~ 527 (720)
.|...+....+.|..+.|+.+|..+.+..+ .+....|...+.+-.+.| +.+.|.++|+.. ..+.+...|...+...
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe 514 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFL 514 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 577777777888999999999999874311 123445554555555655 489999999887 2333677888999988
Q ss_pred HhcCCHHHHHHHHHHHHhcCCC---CcchHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 528 RVHRDAEMAEMAAKQILELDPD---NEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 528 ~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
...|+.+.|..+|+++++..|+ ....+......-.+.|+.+.+.++.+++.+.-
T Consensus 515 ~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 515 IYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8999999999999999998873 44567777777788999999999999998754
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.17 E-value=3e-09 Score=111.20 Aligned_cols=162 Identities=12% Similarity=0.035 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-hHHHHHHHHHHHhcCChhhHHHHHHHHHHH---cCCCccHHH
Q 005000 416 TWTAMIVGLAINGHGDKSLDMFSQMLRA----SIIPD-EVTYVGVLSACTHTGMVDEGREYFADMTIQ---HGIEPNEAH 487 (720)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~~p~~~~ 487 (720)
+++.+...|...|++++|++.|++..+. +-.+. ..++..+...+...|++++|.+.|++.... .+.+.....
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 4444555555555555555555554431 10110 124455555556666666666666555420 022222445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCcchHHHH
Q 005000 488 YGCMVDLLGRAGHLNEALEVIKNM----PM--KPN-SIVWGALLGACRVHRD---AEMAEMAAKQILELDPDNEAVYVLL 557 (720)
Q Consensus 488 ~~~li~~~~~~g~~~eA~~~~~~~----~~--~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l 557 (720)
+..+...|.+.|++++|.+.+++. .. .|. ...+..+...+...++ +++|...+++. ...|.....+..+
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~l 342 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHH
Confidence 555666666666666666666554 11 122 2233334344445555 44444444441 1122233455566
Q ss_pred HhHhhhcCChhHHHHHHHHHH
Q 005000 558 CNIYAACNRWDNFRELRQMIL 578 (720)
Q Consensus 558 ~~~~~~~g~~~~a~~~~~~m~ 578 (720)
+.+|...|++++|.+.+++..
T Consensus 343 a~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 666777777777666666554
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.15 E-value=1.4e-09 Score=100.21 Aligned_cols=169 Identities=14% Similarity=0.026 Sum_probs=143.7
Q ss_pred hhHhhHHhhhhhhcCCHHHHHHHHHhccCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 005000 383 IFVGNALIDMYCKCGDVEKAQRVFREMLRK---DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSAC 459 (720)
Q Consensus 383 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 459 (720)
...+..+...|...|++++|...|+++.+. +...|..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345667788899999999999999988643 67889999999999999999999999998863 33567888888899
Q ss_pred HhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 005000 460 THTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAE 537 (720)
Q Consensus 460 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 537 (720)
...|++++|.++++++... .+.+...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999998743 2456788889999999999999999999987 3334 6788999999999999999999
Q ss_pred HHHHHHHhcCCCCcchH
Q 005000 538 MAAKQILELDPDNEAVY 554 (720)
Q Consensus 538 ~~~~~~~~~~p~~~~~~ 554 (720)
..++++++..|+++...
T Consensus 165 ~~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 165 PHFKKANELDEGASVEL 181 (186)
T ss_dssp HHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHcCCCchhhH
Confidence 99999999999876543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.09 E-value=1.4e-09 Score=107.98 Aligned_cols=220 Identities=12% Similarity=0.073 Sum_probs=145.3
Q ss_pred ccCcHHHHHHHHHHHHH-------cCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCC-----------CHHHHHHHH
Q 005000 360 NLGALELGEWVKTYIDK-------NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK-----------DKFTWTAMI 421 (720)
Q Consensus 360 ~~~~~~~a~~i~~~~~~-------~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li 421 (720)
..|+++.|...+..+.+ ...+....++..+...|...|++++|...|++..+. ...+|..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34555555555555443 232334667788888899999999999888876421 345778888
Q ss_pred HHHHHcCChHHHHHHHHHHHHC------CCCCC-hHHHHHHHHHHHhcCChhhHHHHHHHHHHHc-----CCCc-cHHHH
Q 005000 422 VGLAINGHGDKSLDMFSQMLRA------SIIPD-EVTYVGVLSACTHTGMVDEGREYFADMTIQH-----GIEP-NEAHY 488 (720)
Q Consensus 422 ~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p-~~~~~ 488 (720)
..|...|++++|++.|++.... .-.|+ ..++..+...+...|++++|..+++++.... +-.| ....+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 8888899999999999887764 11233 3567778888888899999999988876431 1122 35677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-C---------CCC-CHHHHHHHHHHHHhcCC------HHHHHHHHHHHHhcCCCCc
Q 005000 489 GCMVDLLGRAGHLNEALEVIKNM-P---------MKP-NSIVWGALLGACRVHRD------AEMAEMAAKQILELDPDNE 551 (720)
Q Consensus 489 ~~li~~~~~~g~~~eA~~~~~~~-~---------~~p-~~~~~~~ll~~~~~~g~------~~~a~~~~~~~~~~~p~~~ 551 (720)
..+...|.+.|++++|.+.++++ . ..+ ....|..+.......+. +..+...++......|..+
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN 252 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 78888888999999998888776 1 122 22334444333333322 2333333333333345566
Q ss_pred chHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 552 AVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 552 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
..+..++.+|...|++++|.+.+++..+
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7889999999999999999999998765
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.04 E-value=4.8e-09 Score=109.63 Aligned_cols=300 Identities=8% Similarity=0.027 Sum_probs=214.6
Q ss_pred CCCChHHHHHHHHHH--HhcCCHHHHHHHHhhcCC------C--CchhHHHHHHHH--H---hcCCHH---------HHH
Q 005000 247 IVPNLILENALTDMY--AACGEMGFALEIFGNIKN------K--DVISWTAIVTGY--I---NRGQVD---------MAR 302 (720)
Q Consensus 247 ~~~~~~~~~~li~~y--~~~g~~~~A~~~~~~~~~------~--~~~~~~~li~~~--~---~~g~~~---------~A~ 302 (720)
..|+..+.+.|-+.| .+.+++++|..+++++.. . ++..|-.++..- . .....+ +..
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 356778888888888 899999999999987643 1 233333333321 1 111111 333
Q ss_pred HHHhhCCCC-C-c---cchHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHH
Q 005000 303 QYFDQMPER-D-Y---VLWTAMIDGYLRVNRFREALTLFREMQTSNI-RPD----EFTIVSILTACANLGALELGEWVKT 372 (720)
Q Consensus 303 ~~f~~~~~~-~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~~~~a~~i~~ 372 (720)
+..+....+ + . ..|......+...|++++|+..|++....-. .++ ..++..+...+...|+++.|...+.
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 333322222 1 1 1233445567889999999999999876421 133 3466777788899999999999998
Q ss_pred HHHHcCC-----C-CChhHhhHHhhhhhhcCCHHHHHHHHHhccC-----CC----HHHHHHHHHHHHHcCChHHHHHHH
Q 005000 373 YIDKNKV-----K-NDIFVGNALIDMYCKCGDVEKAQRVFREMLR-----KD----KFTWTAMIVGLAINGHGDKSLDMF 437 (720)
Q Consensus 373 ~~~~~~~-----~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~ 437 (720)
.+.+... . ....+++.+...|...|++++|.+.|++..+ ++ ..+++.+...|...|++++|++.|
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8765311 1 1245678899999999999999999988743 22 347888899999999999999999
Q ss_pred HHHHH-----CCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCC---CccHHHHHHHHHHHHhcCC---HHHHHH
Q 005000 438 SQMLR-----ASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGI---EPNEAHYGCMVDLLGRAGH---LNEALE 506 (720)
Q Consensus 438 ~~m~~-----~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~---~p~~~~~~~li~~~~~~g~---~~eA~~ 506 (720)
++..+ .. +....++..+...+...|++++|..++++..+...- +.....+..+...|...|+ +++|+.
T Consensus 246 ~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~ 324 (378)
T 3q15_A 246 QKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLS 324 (378)
T ss_dssp HHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 99887 32 222567888899999999999999999998753322 2224556777778888888 999999
Q ss_pred HHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005000 507 VIKNMPMKPN-SIVWGALLGACRVHRDAEMAEMAAKQILELD 547 (720)
Q Consensus 507 ~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 547 (720)
.+++....|+ ...+..+...+...|++++|...++++++..
T Consensus 325 ~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 325 YFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 9999765443 3456778888999999999999999988753
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.04 E-value=1.2e-07 Score=98.60 Aligned_cols=228 Identities=11% Similarity=-0.034 Sum_probs=111.8
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHh----hHHHHHHHHhcCCCchHHHHHHHHHHHcCCC-CC----hHHHHHHHH
Q 005000 189 SGYKRVKQFDETRKLFGEMERKGVLPTSV----TIVLVLSACAKLKDLDVGKRAHRYVKECKIV-PN----LILENALTD 259 (720)
Q Consensus 189 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~li~ 259 (720)
..+...|++++|+..+++........+.. .+..+...+...|+++.|...+....+.... ++ ..+...+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34556677777777777665543211211 2333444555666777776666665542111 11 123455666
Q ss_pred HHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCC----CccchHHHHHHHHhcCChhHHHHH
Q 005000 260 MYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPER----DYVLWTAMIDGYLRVNRFREALTL 335 (720)
Q Consensus 260 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~ 335 (720)
.|...|++++|...+++. .++......+ ....+..+...+...|++++|...
T Consensus 102 ~~~~~G~~~~A~~~~~~a------------------------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 157 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKA------------------------FQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEAS 157 (373)
T ss_dssp HHHHTTCHHHHHHHHHHH------------------------HHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHH------------------------HHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 677777777777766642 2222222222 123455666777778888888888
Q ss_pred HHHHHHCCCC--C--CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCCh-hHhh-----HHhhhhhhcCCHHHHHHH
Q 005000 336 FREMQTSNIR--P--DEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDI-FVGN-----ALIDMYCKCGDVEKAQRV 405 (720)
Q Consensus 336 ~~~m~~~g~~--p--~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~-~~~~-----~li~~y~~~g~~~~A~~~ 405 (720)
+++....... + ...++..+...+...|+++.|...+....+..-.++. ..+. ..+..+...|++++|...
T Consensus 158 ~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 237 (373)
T 1hz4_A 158 ARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANW 237 (373)
T ss_dssp HHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8776643211 1 1233444444455555565555555554432111110 0111 122334455555555555
Q ss_pred HHhccCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005000 406 FREMLRKD-------KFTWTAMIVGLAINGHGDKSLDMFSQM 440 (720)
Q Consensus 406 ~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m 440 (720)
+++....+ ...+..+...+...|++++|...+++.
T Consensus 238 ~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 238 LRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp HHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55553321 112333344444445555554444443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.3e-08 Score=98.31 Aligned_cols=205 Identities=11% Similarity=-0.002 Sum_probs=126.8
Q ss_pred ChhHhhHHhhhhhhcCCHHHHHHHHHhccCC---C---HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC-hHHHH
Q 005000 382 DIFVGNALIDMYCKCGDVEKAQRVFREMLRK---D---KFTWTAMIVGLAINGHGDKSLDMFSQMLRASI-IPD-EVTYV 453 (720)
Q Consensus 382 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~t~~ 453 (720)
+...+-.+...+.+.|++++|...|+.+.+. + ...|..+...|.+.|++++|+..|++.++... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 3445555566666667777777776666432 2 44566666666666666666666666666421 112 13444
Q ss_pred HHHHHHHh--------cCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005000 454 GVLSACTH--------TGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLG 525 (720)
Q Consensus 454 ~ll~a~~~--------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~ 525 (720)
.+..++.. .|++++|...|+++.+...-.+ .....+.......+.+ ...+..+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~--~~~~a~~~~~~~~~~~---------------~~~~~~la~ 156 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE--LVDDATQKIRELRAKL---------------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT--THHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch--hHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 45555555 6666666666666653321111 1111111110000000 112466778
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCC---cchHHHHHhHhhhc----------CChhHHHHHHHHHHhCCCccCCcccEEE
Q 005000 526 ACRVHRDAEMAEMAAKQILELDPDN---EAVYVLLCNIYAAC----------NRWDNFRELRQMILDRGIKKTPGCSMIE 592 (720)
Q Consensus 526 ~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~s~~~ 592 (720)
.+...|++++|+..++++++..|++ +..+..++.+|... |++++|...++.+.+.. |
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~----p------ 226 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF----P------ 226 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC----T------
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC----C------
Confidence 8999999999999999999999985 45888999999877 99999999999987643 2
Q ss_pred ECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHHh
Q 005000 593 MNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKF 626 (720)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 626 (720)
.+|...++...+..+..++++
T Consensus 227 -------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 -------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp -------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred -------------CChHHHHHHHHHHHHHHHHHH
Confidence 245567777777777766654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=4.6e-09 Score=117.92 Aligned_cols=164 Identities=16% Similarity=0.214 Sum_probs=142.1
Q ss_pred CChhHhhHHhhhhhhcCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHH
Q 005000 381 NDIFVGNALIDMYCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD-EVTYVGVL 456 (720)
Q Consensus 381 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll 456 (720)
.+..+++.|...|.+.|++++|++.|++..+ .+..+|+.+...|.+.|++++|++.|++.++. .|+ ...|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 3467788999999999999999999998753 36789999999999999999999999999885 555 46889999
Q ss_pred HHHHhcCChhhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 005000 457 SACTHTGMVDEGREYFADMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDA 533 (720)
Q Consensus 457 ~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 533 (720)
.++...|++++|++.|++..+ +.| +...|..+..+|.+.|++++|++.|++. .+.| +...|..+...+...|++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 999999999999999998873 244 5788999999999999999999999987 5666 578899999999999999
Q ss_pred HHHHHHHHHHHhcCCC
Q 005000 534 EMAEMAAKQILELDPD 549 (720)
Q Consensus 534 ~~a~~~~~~~~~~~p~ 549 (720)
++|.+.+++++++.|+
T Consensus 162 ~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 162 TDYDERMKKLVSIVAD 177 (723)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChh
Confidence 9999999999987543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=5.2e-09 Score=104.94 Aligned_cols=200 Identities=10% Similarity=-0.020 Sum_probs=145.2
Q ss_pred cHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCC-----C----HHHHHHHHHHHHHcCChHHH
Q 005000 363 ALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK-----D----KFTWTAMIVGLAINGHGDKS 433 (720)
Q Consensus 363 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~g~~~~A 433 (720)
+++.|...+..+ ...|...|++++|...|++...- + ..+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777776655 44677889999999988876421 2 45888999999999999999
Q ss_pred HHHHHHHHHCCC---CCC--hHHHHHHHHHHHhc-CChhhHHHHHHHHHHHcCCCcc----HHHHHHHHHHHHhcCCHHH
Q 005000 434 LDMFSQMLRASI---IPD--EVTYVGVLSACTHT-GMVDEGREYFADMTIQHGIEPN----EAHYGCMVDLLGRAGHLNE 503 (720)
Q Consensus 434 ~~l~~~m~~~g~---~p~--~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~e 503 (720)
+..|++.++... .+. ..++..+..++... |++++|+..|++..+...-..+ ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 999998876311 111 24788888899996 9999999999988642211111 4568889999999999999
Q ss_pred HHHHHHhC-CCCCC---H-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch-----HHHHHhHhh--hcCCh
Q 005000 504 ALEVIKNM-PMKPN---S-----IVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAV-----YVLLCNIYA--ACNRW 567 (720)
Q Consensus 504 A~~~~~~~-~~~p~---~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~ 567 (720)
|++.+++. ...|+ . ..|..+...+...|++++|...++++++++|+.... +..++..|. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999987 23332 1 157778888999999999999999999999985543 344566664 45778
Q ss_pred hHHHHHHHHH
Q 005000 568 DNFRELRQMI 577 (720)
Q Consensus 568 ~~a~~~~~~m 577 (720)
++|.+.++.+
T Consensus 257 ~~A~~~~~~~ 266 (292)
T 1qqe_A 257 SEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHhccC
Confidence 8888877544
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=9.3e-09 Score=103.07 Aligned_cols=169 Identities=9% Similarity=-0.037 Sum_probs=109.3
Q ss_pred HhhHHhhhhhhcCCHHHHHHHHHhccCC-----C----HHHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCC-C----h
Q 005000 385 VGNALIDMYCKCGDVEKAQRVFREMLRK-----D----KFTWTAMIVGLAIN-GHGDKSLDMFSQMLRASIIP-D----E 449 (720)
Q Consensus 385 ~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p-~----~ 449 (720)
+++.+..+|.+.|++++|...|++..+- + ..+|+.+...|... |++++|+..|++.++..... + .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 4455556666666666666666554321 1 34677777888885 88888888888877631110 1 2
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccH-----HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-----
Q 005000 450 VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNE-----AHYGCMVDLLGRAGHLNEALEVIKNM-PMKPNSI----- 518 (720)
Q Consensus 450 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~----- 518 (720)
.++..+...+...|++++|+..|++..+...-.+.. ..|..+..+|...|++++|...+++. .+.|+..
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 238 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 467778888888999999999998886322111111 25677788888899999999999887 4555422
Q ss_pred -HHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCCcch
Q 005000 519 -VWGALLGACR--VHRDAEMAEMAAKQILELDPDNEAV 553 (720)
Q Consensus 519 -~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~~~~ 553 (720)
.+..++.++. ..+++++|...++++.+++|.+...
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~ 276 (292)
T 1qqe_A 239 NFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITI 276 (292)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHH
Confidence 3444556664 4567888888888888888765333
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.95 E-value=5.2e-08 Score=93.36 Aligned_cols=179 Identities=9% Similarity=-0.044 Sum_probs=108.9
Q ss_pred hHhhHHhhhhhhcCCHHHHHHHHHhccC--CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChH----HHH
Q 005000 384 FVGNALIDMYCKCGDVEKAQRVFREMLR--KD----KFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEV----TYV 453 (720)
Q Consensus 384 ~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~ 453 (720)
..+..+...+.+.|++++|...|+++.. |+ ...+..+..+|.+.|++++|+..|+++++. .|+.. .+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 3444556667777777777777777643 21 245666677777777777777777777764 23321 233
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHH-----------
Q 005000 454 GVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN-SIVW----------- 520 (720)
Q Consensus 454 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~----------- 520 (720)
.+..++...|.. .+ ..|..+...+...|++++|...|+++ ...|+ ...+
T Consensus 83 ~~g~~~~~~~~~-----~~-------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~ 144 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL-------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD 144 (225)
T ss_dssp HHHHHHHHHHC--------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hh-------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH
Confidence 333333321100 00 00001111122234455555555444 22222 1111
Q ss_pred ------HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc---chHHHHHhHhhhcCChhHHHHHHHHHHhCCC
Q 005000 521 ------GALLGACRVHRDAEMAEMAAKQILELDPDNE---AVYVLLCNIYAACNRWDNFRELRQMILDRGI 582 (720)
Q Consensus 521 ------~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 582 (720)
..+...+...|++++|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+.
T Consensus 145 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 145 RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 3455678899999999999999999999976 5788999999999999999999999887654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.6e-08 Score=99.48 Aligned_cols=203 Identities=9% Similarity=-0.004 Sum_probs=147.1
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC---hhHhhHHhhhhhhcCCHHHHHHHHHhccC--C----CHHH
Q 005000 346 PDEFTIVSILTACANLGALELGEWVKTYIDKNKVKND---IFVGNALIDMYCKCGDVEKAQRVFREMLR--K----DKFT 416 (720)
Q Consensus 346 p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~----~~~~ 416 (720)
.+...+-.....+.+.|+++.|...+..+++.. +.+ ..++..+...|.+.|++++|...|+...+ | ....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 355666777778889999999999999998865 223 56778899999999999999999999853 2 2456
Q ss_pred HHHHHHHHHH--------cCChHHHHHHHHHHHHCCCCCChH-HHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHH
Q 005000 417 WTAMIVGLAI--------NGHGDKSLDMFSQMLRASIIPDEV-TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAH 487 (720)
Q Consensus 417 ~~~li~~~~~--------~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 487 (720)
+..+..++.. .|++++|+..|++.++. .|+.. ....+ ..+..+... -...
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-----~~~~ 150 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-----LARK 150 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-----HHHH
Confidence 7778888888 99999999999999985 44432 22111 111111100 1123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCcc
Q 005000 488 YGCMVDLLGRAGHLNEALEVIKNM-PMKPN----SIVWGALLGACRVH----------RDAEMAEMAAKQILELDPDNEA 552 (720)
Q Consensus 488 ~~~li~~~~~~g~~~eA~~~~~~~-~~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~ 552 (720)
+..+...|.+.|++++|...|+++ ...|+ ...+..+..++... |++++|...++++++..|+++.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 556778899999999999999887 22333 45677777777765 8999999999999999999853
Q ss_pred ---hHHHHHhHhhhcCChhHH
Q 005000 553 ---VYVLLCNIYAACNRWDNF 570 (720)
Q Consensus 553 ---~~~~l~~~~~~~g~~~~a 570 (720)
+...+..++.+.|+++++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhhhh
Confidence 445566666666655543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.93 E-value=7.1e-08 Score=94.93 Aligned_cols=173 Identities=10% Similarity=0.039 Sum_probs=100.6
Q ss_pred HHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 005000 402 AQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDE-VTYVGVLSACTHTGMVDEGREYFADMTI 477 (720)
Q Consensus 402 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 477 (720)
|...|++... ++..++..+..++...|++++|++++.+.+..+..++. ..+..++..+.+.|+++.|.+.++.|..
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5555555532 34445555666666677777777777766554432222 4555566667777777777777776642
Q ss_pred HcCCCc-----cHHHHHHHHHH--HHhcC--CHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Q 005000 478 QHGIEP-----NEAHYGCMVDL--LGRAG--HLNEALEVIKNM-PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILEL- 546 (720)
Q Consensus 478 ~~~~~p-----~~~~~~~li~~--~~~~g--~~~eA~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 546 (720)
..| +..+...|..+ ....| ++++|..+|+++ ...|+..+-..++.++...|++++|+..++.+.+.
T Consensus 165 ---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 ---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp ---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred ---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 244 23333344433 22223 677777777776 23344223333344666777777777777766654
Q ss_pred ---------CCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 547 ---------DPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 547 ---------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
+|+++.++..++.+....|+ +|.+++.++++
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 36676676666666666665 66677766665
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.4e-09 Score=97.00 Aligned_cols=136 Identities=10% Similarity=0.039 Sum_probs=89.8
Q ss_pred cCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 005000 427 NGHGDKSLDMFSQMLRASIIPDE-VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEAL 505 (720)
Q Consensus 427 ~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~ 505 (720)
.|+.++|++.+++.... .|+. ..+..+...|...|++++|++.|++..+.. +-+...|..+..+|.+.|++++|+
T Consensus 10 ~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~ 85 (150)
T 4ga2_A 10 KADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEENTDKAV 85 (150)
T ss_dssp HHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCchHHHH
Confidence 34445555555544332 2222 234445556666666666666666665221 224566667777777777777777
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhcCCCCcchHHHHHhHhhhcCC
Q 005000 506 EVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEM-AAKQILELDPDNEAVYVLLCNIYAACNR 566 (720)
Q Consensus 506 ~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 566 (720)
..|++. .+.| +..+|..+...+...|++++|.. .++++++++|+++.+|...+.++...|+
T Consensus 86 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 86 ECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 777765 4455 57788888888888888876555 4689999999999999988888888775
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.90 E-value=3e-08 Score=85.59 Aligned_cols=122 Identities=22% Similarity=0.242 Sum_probs=66.6
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCH
Q 005000 456 LSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PM-KPNSIVWGALLGACRVHRDA 533 (720)
Q Consensus 456 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~ 533 (720)
...+...|++++|..+++.+.+. . +.+...+..+...+...|++++|.+.++++ .. +.+...|..+...+...|++
T Consensus 8 ~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 85 (136)
T 2fo7_A 8 GNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY 85 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHc-C-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCH
Confidence 33344444444444444444311 1 122333444444444555555555554443 11 12445566666666666677
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 534 EMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 534 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
++|...++++++..|+++..+..++.+|...|++++|.+.++.+.+
T Consensus 86 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 86 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 7777777777666666666666777777777777777777666654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.90 E-value=4.3e-08 Score=97.07 Aligned_cols=198 Identities=12% Similarity=0.045 Sum_probs=114.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHc------CC-CCChhHhhHHhhhhhhcCCHHHHHHHHHhccC-------C---
Q 005000 350 TIVSILTACANLGALELGEWVKTYIDKN------KV-KNDIFVGNALIDMYCKCGDVEKAQRVFREMLR-------K--- 412 (720)
Q Consensus 350 t~~~ll~~~~~~~~~~~a~~i~~~~~~~------~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~--- 412 (720)
++..+...+...|+++.|...+..+.+. +. +....++..+...|...|++++|...|++... +
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 124 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 3344444444445555554444444332 11 12244566667777777777777777766532 1
Q ss_pred -CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-hHHHHHHHHHHHhcCChhhHHHHHHHHHHHc-----
Q 005000 413 -DKFTWTAMIVGLAINGHGDKSLDMFSQMLRA------SIIPD-EVTYVGVLSACTHTGMVDEGREYFADMTIQH----- 479 (720)
Q Consensus 413 -~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----- 479 (720)
...+|..+...|...|++++|+..|++..+. +-.|+ ..++..+...+...|++++|..+++++.+..
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 204 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF 204 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 2446677777778888888888888877663 11332 2467777788888888888888888776321
Q ss_pred -CCCc-cHHHHHHHHHHHHhc------CCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005000 480 -GIEP-NEAHYGCMVDLLGRA------GHLNEALEVIKNMP-MKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELD 547 (720)
Q Consensus 480 -~~~p-~~~~~~~li~~~~~~------g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 547 (720)
...+ ....+..+...+... ..+.++...++... ..| ...++..+...+...|++++|...++++++..
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 205 GSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp SSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 1112 122333333333332 23455555555553 223 35578888899999999999999999988753
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=2.3e-08 Score=99.91 Aligned_cols=177 Identities=10% Similarity=0.013 Sum_probs=144.5
Q ss_pred CCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCChhhHHHHHHHH
Q 005000 397 GDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD-EVTYVGVLSACTHTGMVDEGREYFADM 475 (720)
Q Consensus 397 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m 475 (720)
...+.....+......+...+..+...+...|++++|+..|++..+. .|+ ...+..+...+...|++++|...++++
T Consensus 100 ~~~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~ 177 (287)
T 3qou_A 100 QPEEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTI 177 (287)
T ss_dssp CCHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34556666777766566677888888999999999999999999885 454 467888889999999999999999987
Q ss_pred HHHcCCCccHHHHHHHH-HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--
Q 005000 476 TIQHGIEPNEAHYGCMV-DLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDN-- 550 (720)
Q Consensus 476 ~~~~~~~p~~~~~~~li-~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-- 550 (720)
. ...|+........ ..+.+.|+.++|.+.+++. ...| +...+..+...+...|++++|...++++++.+|++
T Consensus 178 ~---~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~ 254 (287)
T 3qou_A 178 P---LQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAAD 254 (287)
T ss_dssp C---GGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGG
T ss_pred c---hhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccc
Confidence 5 2345554333333 3467788888898888876 4455 68899999999999999999999999999999997
Q ss_pred cchHHHHHhHhhhcCChhHHHHHHHHHH
Q 005000 551 EAVYVLLCNIYAACNRWDNFRELRQMIL 578 (720)
Q Consensus 551 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 578 (720)
..++..|+.+|...|+.++|...+++..
T Consensus 255 ~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 255 GQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp GHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 8899999999999999999998887654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.89 E-value=8.7e-09 Score=116.18 Aligned_cols=167 Identities=11% Similarity=-0.057 Sum_probs=105.7
Q ss_pred hhcCCHHHHHHHHHhcc-----------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHh
Q 005000 394 CKCGDVEKAQRVFREML-----------RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP-DEVTYVGVLSACTH 461 (720)
Q Consensus 394 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~ 461 (720)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|++.|++..+. .| +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 45666667766666655 224556666666677777777777777776664 23 33456666666667
Q ss_pred cCChhhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 005000 462 TGMVDEGREYFADMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEM 538 (720)
Q Consensus 462 ~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 538 (720)
.|++++|.+.|+++.+. .| +...|..+..+|.+.|++++ ++.|++. ...| +...|..+..++...|++++|..
T Consensus 480 ~g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 77777777777666522 23 45566666677777777777 6666665 3344 45667777777777777777777
Q ss_pred HHHHHHhcCCCCcchHHHHHhHhhhcCC
Q 005000 539 AAKQILELDPDNEAVYVLLCNIYAACNR 566 (720)
Q Consensus 539 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 566 (720)
.++++++++|++..++..++.+|...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 7777777777777777777777666554
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=4e-09 Score=93.93 Aligned_cols=121 Identities=11% Similarity=0.012 Sum_probs=101.0
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHcCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 005000 456 LSACTHTGMVDEGREYFADMTIQHGIEPN-EAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRD 532 (720)
Q Consensus 456 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 532 (720)
...+...|++++|+..++... ...|+ ...+-.+..+|.+.|++++|++.|++. .+.| +..+|..+...+...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 344566788999999998764 33443 345567899999999999999999997 5566 68899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHH-HHHHHh
Q 005000 533 AEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFREL-RQMILD 579 (720)
Q Consensus 533 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 579 (720)
+++|+..++++++++|+++.++..++.+|.+.|++++|.+. +++..+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887765 466654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.87 E-value=7e-08 Score=83.27 Aligned_cols=131 Identities=19% Similarity=0.262 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 005000 416 TWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLL 495 (720)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 495 (720)
.|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|..+++++... .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 46677777888888888888888887653 234566777777888888888888888887632 234566777888888
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005000 496 GRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPD 549 (720)
Q Consensus 496 ~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 549 (720)
.+.|++++|.+.++++ ...| +...|..+...+...|++++|...++++++.+|+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 8999999999888876 2233 6778888889999999999999999999988886
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.86 E-value=2.6e-07 Score=90.95 Aligned_cols=180 Identities=13% Similarity=0.096 Sum_probs=130.8
Q ss_pred HHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCC-----CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005000 367 GEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK-----DKFTWTAMIVGLAINGHGDKSLDMFSQML 441 (720)
Q Consensus 367 a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 441 (720)
+...++...+.+ .++......+..+|...|++++|++++.+.... +...+-.++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444555554444 344555567888888899999999999887433 45677778889999999999999999998
Q ss_pred HCCCCC-----ChHHHHHHHHH--HHhcC--ChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 005000 442 RASIIP-----DEVTYVGVLSA--CTHTG--MVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM- 511 (720)
Q Consensus 442 ~~g~~p-----~~~t~~~ll~a--~~~~g--~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~- 511 (720)
+. .| +..+...+..+ ....| ++++|..+|+++.. -.|+......+..++.+.|++++|++.++.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~---~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ---TFPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT---TSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH---hCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 74 66 35666666666 33334 89999999999863 2455333344444899999999999999865
Q ss_pred CC----------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchH
Q 005000 512 PM----------KP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVY 554 (720)
Q Consensus 512 ~~----------~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 554 (720)
.. .| |+.+...++......|+ .|.++++++.+..|+++.+.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 21 25 56667677766667787 88999999999999987543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.83 E-value=2.5e-06 Score=91.72 Aligned_cols=371 Identities=11% Similarity=-0.009 Sum_probs=203.4
Q ss_pred cC-ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCeeeHHHHHHHHHhCCC-hhHHHHH
Q 005000 128 DI-AVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYK--DDVVTWNAMFSGYKRVKQ-FDETRKL 203 (720)
Q Consensus 128 ~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~-~~~A~~l 203 (720)
.| +++.|+.+++.++..- |. |+++.++.+|+.... |++..|...+.-..+.+. .+....+
T Consensus 7 ~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~ 70 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEV 70 (493)
T ss_dssp -----CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHH
T ss_pred cCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHH
Confidence 34 3667777777776532 11 889999999986544 688888888887776663 4566777
Q ss_pred HHHHHHC-CCCC-CHhhHHHHHHHHhc----CCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 005000 204 FGEMERK-GVLP-TSVTIVLVLSACAK----LKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNI 277 (720)
Q Consensus 204 ~~~m~~~-g~~p-~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 277 (720)
|+..... |..| +...|...+..+.. .++.+.++.+++.+++.....-..+|......-.. .....+.++..+.
T Consensus 71 fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~-~~~~~~~~~~~~~ 149 (493)
T 2uy1_A 71 YEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELE-LNKITGKKIVGDT 149 (493)
T ss_dssp HHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH-HCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHH-hccccHHHHHHHH
Confidence 8776653 5333 45566666655432 35677888888888874322122233322222111 1122222222210
Q ss_pred CCCCchhHHHHHHHHHhcCCHHHHHHHHhhCC----CCCccchHHHHHHHHhcCC-------hhHHHHHHHHHHHCCCCC
Q 005000 278 KNKDVISWTAIVTGYINRGQVDMARQYFDQMP----ERDYVLWTAMIDGYLRVNR-------FREALTLFREMQTSNIRP 346 (720)
Q Consensus 278 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p 346 (720)
. +.+..|..+++.+. ..+...|...+.--..++. .+.+..+|++++... +.
T Consensus 150 ---------------~--~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~ 211 (493)
T 2uy1_A 150 ---------------L--PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YY 211 (493)
T ss_dssp ---------------H--HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TT
T ss_pred ---------------h--HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CC
Confidence 0 11122222221111 0122345544443222210 234566777776642 33
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHH-HHHHHhc------------cCCC
Q 005000 347 DEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKA-QRVFREM------------LRKD 413 (720)
Q Consensus 347 ~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A-~~~~~~~------------~~~~ 413 (720)
+...+...+.-+...|+.+.|..+++.+++. +.+...+.. |+...+.++. ..+.+.. ....
T Consensus 212 ~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 285 (493)
T 2uy1_A 212 AEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKEL 285 (493)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhccccc
Confidence 4555555555566677788888888877776 333333322 2221111111 1111111 0011
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh-cCChhhHHHHHHHHHHHcCCCccHHHHHHHH
Q 005000 414 KFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTH-TGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492 (720)
Q Consensus 414 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 492 (720)
...|-..+....+.++.+.|..+|++. .. ..++...|......-.. .++.+.|..+|+...+..+- ++..+...+
T Consensus 286 ~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~--~~~~~~~yi 361 (493)
T 2uy1_A 286 DLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD--STLLKEEFF 361 (493)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC--CHHHHHHHH
Confidence 245666677666777888888888888 32 12233344332222222 33688899999888755432 344566678
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005000 493 DLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILE 545 (720)
Q Consensus 493 ~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 545 (720)
+...+.|+.+.|..+|+++. .....|...+..-..+|+.+.+..++++..+
T Consensus 362 d~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 362 LFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888888888888888873 2567788888777778888888777777664
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.82 E-value=2.2e-07 Score=88.01 Aligned_cols=172 Identities=8% Similarity=-0.054 Sum_probs=135.1
Q ss_pred HHHHHHhcc-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC----ChhhHHHHHHHHH
Q 005000 402 AQRVFREML-RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTG----MVDEGREYFADMT 476 (720)
Q Consensus 402 A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~m~ 476 (720)
|.+.|++.. ..++.++..+...|...+++++|++.|++..+.| +...+..+...+.. + ++++|.++|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 445555543 3467778888888888888888888888888765 45566666666766 6 8899999998885
Q ss_pred HHcCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 005000 477 IQHGIEPNEAHYGCMVDLLGR----AGHLNEALEVIKNM-PMKPN---SIVWGALLGACRV----HRDAEMAEMAAKQIL 544 (720)
Q Consensus 477 ~~~~~~p~~~~~~~li~~~~~----~g~~~eA~~~~~~~-~~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~ 544 (720)
+. -++..+..|..+|.. .+++++|.++|++. ...|. +..+..|...|.. .+++++|...++++.
T Consensus 81 -~~---g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 -EA---GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp -HT---TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred -HC---CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 33 356677778888877 88999999999987 44443 7888888888888 889999999999999
Q ss_pred hcCCCCcchHHHHHhHhhhc-C-----ChhHHHHHHHHHHhCCC
Q 005000 545 ELDPDNEAVYVLLCNIYAAC-N-----RWDNFRELRQMILDRGI 582 (720)
Q Consensus 545 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~~~ 582 (720)
++ |.++..+..|+.+|... | ++++|.+.+++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 98 66778999999999765 3 89999999999887663
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.81 E-value=2.1e-08 Score=88.89 Aligned_cols=102 Identities=9% Similarity=-0.041 Sum_probs=90.0
Q ss_pred CCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 005000 480 GIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVL 556 (720)
Q Consensus 480 ~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 556 (720)
.+.| +...+..+...|.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 3444 3566778888899999999999999987 4556 68899999999999999999999999999999999999999
Q ss_pred HHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 557 LCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 557 l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
++.+|.+.|++++|.+.+++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999987743
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.78 E-value=2.9e-08 Score=91.07 Aligned_cols=157 Identities=12% Similarity=0.012 Sum_probs=99.7
Q ss_pred hhHHhhhhhhcCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 005000 386 GNALIDMYCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHT 462 (720)
Q Consensus 386 ~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 462 (720)
...+...+.+.|++++|...|++..+ .+...|..+...+...|++++|+..|++.... .|+.... .+...+
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~-~~~~~~--- 82 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYK-SLIAKL--- 82 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHH-HHHHHH---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHH-HHHHHH---
Confidence 34455566666677777766666542 24555666666666666666666666655443 2222111 111000
Q ss_pred CChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 005000 463 GMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAA 540 (720)
Q Consensus 463 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 540 (720)
.+.+.+...+|.+.+++. ...| +...|..+...+...|++++|...+
T Consensus 83 -------------------------------~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~ 131 (176)
T 2r5s_A 83 -------------------------------ELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELL 131 (176)
T ss_dssp -------------------------------HHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -------------------------------HHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 001111112344444443 2345 5788888889999999999999999
Q ss_pred HHHHhcCCCC--cchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 541 KQILELDPDN--EAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 541 ~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
+++++.+|+. +..+..++.+|...|+.++|...+++...
T Consensus 132 ~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 132 WNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 9999999875 55889999999999999999998887653
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.78 E-value=6.1e-08 Score=83.16 Aligned_cols=94 Identities=13% Similarity=0.110 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhh
Q 005000 486 AHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAA 563 (720)
Q Consensus 486 ~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 563 (720)
..+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..++.+|..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 44555666666666666666666665 3334 566666666667777777777777777777777777777777777777
Q ss_pred cCChhHHHHHHHHHHh
Q 005000 564 CNRWDNFRELRQMILD 579 (720)
Q Consensus 564 ~g~~~~a~~~~~~m~~ 579 (720)
.|++++|.+.+++..+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7777777777666654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=6.8e-08 Score=106.84 Aligned_cols=159 Identities=12% Similarity=0.068 Sum_probs=125.2
Q ss_pred cCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCChhhHHHH
Q 005000 396 CGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD-EVTYVGVLSACTHTGMVDEGREY 471 (720)
Q Consensus 396 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 471 (720)
.|++++|.+.|++..+ .+...|..+...|...|++++|++.|++..+. .|+ ...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999998864 36788999999999999999999999999985 444 57888899999999999999999
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhc
Q 005000 472 FADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVH---RDAEMAEMAAKQILEL 546 (720)
Q Consensus 472 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~ 546 (720)
+++..+.. +.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |++++|...++++++.
T Consensus 80 ~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99987432 335788999999999999999999999987 4445 678899999999999 9999999999999999
Q ss_pred CCCCcchHHHHH
Q 005000 547 DPDNEAVYVLLC 558 (720)
Q Consensus 547 ~p~~~~~~~~l~ 558 (720)
+|++...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999988888777
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.9e-07 Score=103.67 Aligned_cols=190 Identities=14% Similarity=0.100 Sum_probs=148.8
Q ss_pred hccCcHHHHHHHHHHHH--------HcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHc
Q 005000 359 ANLGALELGEWVKTYID--------KNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAIN 427 (720)
Q Consensus 359 ~~~~~~~~a~~i~~~~~--------~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 427 (720)
...|++++|.+.+..+. +. .+.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 66788888888888877 32 245677888899999999999999999998853 4778999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 005000 428 GHGDKSLDMFSQMLRASIIPD-EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALE 506 (720)
Q Consensus 428 g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~ 506 (720)
|++++|++.|++.++. .|+ ...+..+..++...|++++ .+.|+++.+.. +.+...|..+..+|.+.|++++|.+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999985 454 4678889999999999999 99999987321 2356788999999999999999999
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhcCCCCcchH
Q 005000 507 VIKNM-PMKPN-SIVWGALLGACRVHRD-----AEMAEMAAKQILELDPDNEAVY 554 (720)
Q Consensus 507 ~~~~~-~~~p~-~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~~~ 554 (720)
.|++. ...|+ ...|..+..++...++ .+...++.+.+.++.++++...
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~ 610 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVL 610 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHH
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHH
Confidence 99998 57785 5678788777766555 3445555555556665555443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=4.3e-08 Score=86.86 Aligned_cols=101 Identities=8% Similarity=-0.028 Sum_probs=88.4
Q ss_pred CCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 005000 480 GIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVL 556 (720)
Q Consensus 480 ~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 556 (720)
.+.| +...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 3445 4566777888899999999999999887 3445 78889999999999999999999999999999999999999
Q ss_pred HHhHhhhcCChhHHHHHHHHHHhC
Q 005000 557 LCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 557 l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
++.+|...|++++|.+.++...+.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999988764
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.72 E-value=4.9e-07 Score=91.16 Aligned_cols=221 Identities=10% Similarity=-0.004 Sum_probs=154.4
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHH
Q 005000 325 RVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQR 404 (720)
Q Consensus 325 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~ 404 (720)
..|++++|.+++++..+.. +.. + +...++++.|...+..+ ...|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 3567888998888776532 111 0 11136677766665543 456778899999988
Q ss_pred HHHhccCC-----C----HHHHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCC--hHHHHHHHHHHHhcCChhhHHH
Q 005000 405 VFREMLRK-----D----KFTWTAMIVGLAINGHGDKSLDMFSQMLRAS---IIPD--EVTYVGVLSACTHTGMVDEGRE 470 (720)
Q Consensus 405 ~~~~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~--~~t~~~ll~a~~~~g~~~~a~~ 470 (720)
.|.+...- + ..+|+.+...|...|++++|+..|++.++.- -.|. ..++..+...+.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 88876321 2 3478888899999999999999999876531 1222 2467778888888 99999999
Q ss_pred HHHHHHHHcCCC---c-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCCHHHHHH
Q 005000 471 YFADMTIQHGIE---P-NEAHYGCMVDLLGRAGHLNEALEVIKNM-PM---KPN----SIVWGALLGACRVHRDAEMAEM 538 (720)
Q Consensus 471 ~~~~m~~~~~~~---p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~ 538 (720)
.|++......-. + ....+..+...|.+.|++++|++.+++. .+ .++ ...+..++..+...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999876422111 1 1467888999999999999999999887 11 122 2356677777888899999999
Q ss_pred HHHHHHhcCCCCcch-----HHHHHhHhhhcCChhHHHHH
Q 005000 539 AAKQILELDPDNEAV-----YVLLCNIYAACNRWDNFREL 573 (720)
Q Consensus 539 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~~ 573 (720)
.+++++ +.|..... ...++..| ..|+.+.+.++
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 999999 99875432 33455555 56776655553
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.2e-07 Score=81.38 Aligned_cols=115 Identities=15% Similarity=0.068 Sum_probs=93.7
Q ss_pred CCCCh-HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 005000 445 IIPDE-VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWG 521 (720)
Q Consensus 445 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~ 521 (720)
+.|+. ..+......+.+.|++++|++.|++..+. -+.+...|..+..+|.+.|++++|++.+++. .+.| +...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 45554 45666777888888888888888887632 1335778888888999999999999998886 4455 678899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHh
Q 005000 522 ALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIY 561 (720)
Q Consensus 522 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 561 (720)
.+..++...|++++|+..++++++++|+++.++..|++++
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999999999999999999999998888877653
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.70 E-value=6e-07 Score=89.83 Aligned_cols=165 Identities=8% Similarity=-0.046 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-----HHHHHHHHHHHhcCChhhHHHHHHHHHHHcC--CCcc--H
Q 005000 415 FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDE-----VTYVGVLSACTHTGMVDEGREYFADMTIQHG--IEPN--E 485 (720)
Q Consensus 415 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p~--~ 485 (720)
..+...+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|...+++...... ..+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34555677788899999999999888775322111 1233455566788899999999988752211 1111 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------C
Q 005000 486 AHYGCMVDLLGRAGHLNEALEVIKNM----PMKPN-----SIVWGALLGACRVHRDAEMAEMAAKQILELDPD------N 550 (720)
Q Consensus 486 ~~~~~li~~~~~~g~~~eA~~~~~~~----~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~ 550 (720)
..|+.+...|...|++++|.+.++++ ...|+ ..++..+...|...|++++|...+++++++.++ -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 57888999999999999999998876 11222 258889999999999999999999999987532 1
Q ss_pred cchHHHHHhHhhhcCChhHH-HHHHHHHHh
Q 005000 551 EAVYVLLCNIYAACNRWDNF-RELRQMILD 579 (720)
Q Consensus 551 ~~~~~~l~~~~~~~g~~~~a-~~~~~~m~~ 579 (720)
..+|..++.+|.+.|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56788999999999999999 776776643
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=2e-07 Score=103.03 Aligned_cols=146 Identities=8% Similarity=-0.054 Sum_probs=71.7
Q ss_pred CcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHH
Q 005000 362 GALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFS 438 (720)
Q Consensus 362 ~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~ 438 (720)
|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45555555555555432 23345555566666666666666666665532 234556666666666666666666666
Q ss_pred HHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc---CCHHHHHHHHHhC
Q 005000 439 QMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRA---GHLNEALEVIKNM 511 (720)
Q Consensus 439 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---g~~~eA~~~~~~~ 511 (720)
+..+.. +.+...+..+..++...|++++|.+.|++..+.. +.+...+..+...|... |+.++|.+.+++.
T Consensus 82 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 665532 1123455555556666666666666666554221 12345555566666666 6666666666554
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.68 E-value=1.3e-06 Score=87.37 Aligned_cols=160 Identities=8% Similarity=-0.045 Sum_probs=115.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCC-CCChH----HHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCcc----HHHHHH
Q 005000 420 MIVGLAINGHGDKSLDMFSQMLRASI-IPDEV----TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN----EAHYGC 490 (720)
Q Consensus 420 li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~ 490 (720)
.+..+...|++++|..++++...... .|+.. .+..+...+...|++++|...|+.+.....-.++ ...++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667778888888888888776321 22211 2334555666777888888888888642221222 346888
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-----C---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------cchHH
Q 005000 491 MVDLLGRAGHLNEALEVIKNMP-----M---KPN-SIVWGALLGACRVHRDAEMAEMAAKQILELDPDN------EAVYV 555 (720)
Q Consensus 491 li~~~~~~g~~~eA~~~~~~~~-----~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 555 (720)
+...|...|++++|.+.++++- . .|. ..+|..+...|...|++++|...+++++++.+.. +..|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8888888999888888887761 1 122 3477889999999999999999999999875432 56889
Q ss_pred HHHhHhhhcCC-hhHHHHHHHHHHh
Q 005000 556 LLCNIYAACNR-WDNFRELRQMILD 579 (720)
Q Consensus 556 ~l~~~~~~~g~-~~~a~~~~~~m~~ 579 (720)
.++.+|.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999998887754
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.68 E-value=4.1e-07 Score=85.85 Aligned_cols=155 Identities=12% Similarity=0.069 Sum_probs=109.6
Q ss_pred hhhhhhcCCHHHHHHHHHhccCC---CHHHHHH----------------HHHHHHHcCChHHHHHHHHHHHHCCCCC-Ch
Q 005000 390 IDMYCKCGDVEKAQRVFREMLRK---DKFTWTA----------------MIVGLAINGHGDKSLDMFSQMLRASIIP-DE 449 (720)
Q Consensus 390 i~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~----------------li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~ 449 (720)
...+.+.|++++|...|++.... +...|.. +...|...|++++|+..|++.++. .| +.
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~ 88 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--APNNV 88 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCH
Confidence 34455666777777776666432 2334444 788888999999999999998885 44 45
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCC--HHHHHHHHHhCCCCCCH--HHHHHHH
Q 005000 450 VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP-NEAHYGCMVDLLGRAGH--LNEALEVIKNMPMKPNS--IVWGALL 524 (720)
Q Consensus 450 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~--~~eA~~~~~~~~~~p~~--~~~~~ll 524 (720)
..+..+..++...|++++|...|+++.+. .| +...+..+...|...|. .+++...++... .|+. ..|..+.
T Consensus 89 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g 164 (208)
T 3urz_A 89 DCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARYRDG 164 (208)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHH
Confidence 67888888899999999999999988732 34 56778888888776654 345566666652 3443 3455566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCC
Q 005000 525 GACRVHRDAEMAEMAAKQILELDPDN 550 (720)
Q Consensus 525 ~~~~~~g~~~~a~~~~~~~~~~~p~~ 550 (720)
.++...|++++|+..+++++++.|++
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 66777889999999999999999974
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.66 E-value=3.7e-07 Score=86.33 Aligned_cols=125 Identities=10% Similarity=0.010 Sum_probs=102.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 005000 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRV 529 (720)
Q Consensus 452 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~ 529 (720)
+..+...+...|++++|...|++. +.|+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 344555667778888888877654 3567777888888888888888888888776 3334 67788999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCc----------------chHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 530 HRDAEMAEMAAKQILELDPDNE----------------AVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 530 ~g~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
.|++++|...+++++++.|++. ..+..++.+|...|++++|.+.++...+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999999888877 899999999999999999999999987654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.63 E-value=3.6e-06 Score=90.42 Aligned_cols=124 Identities=14% Similarity=0.118 Sum_probs=68.3
Q ss_pred chHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhh
Q 005000 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACAN-LGALELGEWVKTYIDKNKVKNDIFVGNALIDMY 393 (720)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y 393 (720)
.|...+....+.+..+.|..+|... ... ..+...|......-.. .++.+.|+.+++...+.- +.+...+...++..
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e 364 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 4555555555666677777777766 211 1222333211111111 224666777777666542 22334455566666
Q ss_pred hhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005000 394 CKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLR 442 (720)
Q Consensus 394 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 442 (720)
.+.|+.+.|..+|+.+. +....|...+.--...|+.+.+.++++++..
T Consensus 365 ~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 365 LRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66777777777777763 3455666666655666666666666666553
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.63 E-value=3e-07 Score=80.70 Aligned_cols=96 Identities=8% Similarity=-0.106 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhh
Q 005000 485 EAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYA 562 (720)
Q Consensus 485 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 562 (720)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 445666777888899999999998886 3445 77889999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhC
Q 005000 563 ACNRWDNFRELRQMILDR 580 (720)
Q Consensus 563 ~~g~~~~a~~~~~~m~~~ 580 (720)
..|++++|.+.++...+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999988764
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.62 E-value=5e-06 Score=82.66 Aligned_cols=192 Identities=14% Similarity=0.180 Sum_probs=112.2
Q ss_pred HhhHHhhhhhhcC--CHHHHHHHHHhccC---CCHHHHHHHHHHH----HHc---CChHHHHHHHHHHHHCCCCCChHHH
Q 005000 385 VGNALIDMYCKCG--DVEKAQRVFREMLR---KDKFTWTAMIVGL----AIN---GHGDKSLDMFSQMLRASIIPDEVTY 452 (720)
Q Consensus 385 ~~~~li~~y~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---g~~~~A~~l~~~m~~~g~~p~~~t~ 452 (720)
+|+.--..+...| +++++++.++.+.. ++..+|+.-...+ ... +++++++++++++.+.. +-|..+|
T Consensus 69 aWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW 147 (306)
T 3dra_A 69 IWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVW 147 (306)
T ss_dssp HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 3333333344444 56666666665532 2344555433333 333 56667777777766642 2244556
Q ss_pred HHHHHHHHhcCChh--hHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC------HHHHHHHHHhC-CCCC-CHHHHHH
Q 005000 453 VGVLSACTHTGMVD--EGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGH------LNEALEVIKNM-PMKP-NSIVWGA 522 (720)
Q Consensus 453 ~~ll~a~~~~g~~~--~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~------~~eA~~~~~~~-~~~p-~~~~~~~ 522 (720)
..-...+.+.|.++ ++.++++.+.+.. .-|...|+.-..++.+.|+ ++++++.++++ ...| |...|+-
T Consensus 148 ~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y 225 (306)
T 3dra_A 148 SYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNY 225 (306)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHH
Confidence 55555566666666 6677776665321 2345555555555555555 66777776665 3344 6677777
Q ss_pred HHHHHHhcCCH-HHHHHHHHHHHhcC---CCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 523 LLGACRVHRDA-EMAEMAAKQILELD---PDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 523 ll~~~~~~g~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
+...+.+.|+. +....+++++++++ |.++.++..++++|.+.|+.++|.+.++.+.+
T Consensus 226 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 226 LLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 77777666653 33445666666655 66667777777777777777777777777654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.60 E-value=8.4e-07 Score=84.85 Aligned_cols=185 Identities=15% Similarity=0.049 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCC--hhHhhHHhhhhhhcCCHHHHHHHHHhccC--CC-H---HHHHH
Q 005000 348 EFTIVSILTACANLGALELGEWVKTYIDKNKVKND--IFVGNALIDMYCKCGDVEKAQRVFREMLR--KD-K---FTWTA 419 (720)
Q Consensus 348 ~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~---~~~~~ 419 (720)
...+-.....+...|+++.|...+..+++...... ...+..+...|.+.|++++|...|++..+ |+ . ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34455566678889999999999999988642221 35677889999999999999999999853 32 2 24555
Q ss_pred HHHHHHH------------------cCChHHHHHHHHHHHHCCCCCChH-HHHHHHHHHHhcCChhhHHHHHHHHHHHcC
Q 005000 420 MIVGLAI------------------NGHGDKSLDMFSQMLRASIIPDEV-TYVGVLSACTHTGMVDEGREYFADMTIQHG 480 (720)
Q Consensus 420 li~~~~~------------------~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 480 (720)
+..++.. .|+.++|+..|+++++. .|+.. ....... ...+...+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~----- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHH-----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHH-----
Confidence 5555554 45677777777777764 34432 1111100 00001111
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 005000 481 IEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN----SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAV 553 (720)
Q Consensus 481 ~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 553 (720)
......+...|.+.|++++|...|+++ ...|+ ...+..+..++.+.|+.++|...++++....|++...
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 011235677899999999999999987 33343 2568888999999999999999999999999987543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.58 E-value=3.5e-07 Score=78.25 Aligned_cols=96 Identities=11% Similarity=0.034 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhh
Q 005000 485 EAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYA 562 (720)
Q Consensus 485 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 562 (720)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 445667777888888899888888876 3444 67888999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhC
Q 005000 563 ACNRWDNFRELRQMILDR 580 (720)
Q Consensus 563 ~~g~~~~a~~~~~~m~~~ 580 (720)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999999888763
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.58 E-value=7.4e-07 Score=81.46 Aligned_cols=154 Identities=15% Similarity=0.083 Sum_probs=99.9
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCC--CHHHHHHHHHH-HHHc
Q 005000 351 IVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK--DKFTWTAMIVG-LAIN 427 (720)
Q Consensus 351 ~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~-~~~~ 427 (720)
+......+...|+++.|...+..+.+.. +.+...+..+...|.+.|++++|...|+..... +...+..+... +...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhh
Confidence 3445566788999999999999877654 456788899999999999999999999998543 34333322211 1222
Q ss_pred CChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCcc---HHHHHHHHHHHHhcCCHHH
Q 005000 428 GHGDKSLDMFSQMLRASIIPD-EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN---EAHYGCMVDLLGRAGHLNE 503 (720)
Q Consensus 428 g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~~~e 503 (720)
+...+|+..|++..+. .|+ ...+..+..++...|++++|...|+++. ...|+ ...+..+...|...|+.++
T Consensus 88 ~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l---~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 88 AAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNIL---KVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---TTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred cccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH---HhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 2333466667766653 343 4556666666667777777777776664 22332 3455566666666666666
Q ss_pred HHHHHHh
Q 005000 504 ALEVIKN 510 (720)
Q Consensus 504 A~~~~~~ 510 (720)
|...|++
T Consensus 163 A~~~y~~ 169 (176)
T 2r5s_A 163 IASKYRR 169 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665553
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.57 E-value=4.1e-07 Score=91.74 Aligned_cols=197 Identities=8% Similarity=-0.018 Sum_probs=150.7
Q ss_pred ccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 005000 360 NLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQ 439 (720)
Q Consensus 360 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 439 (720)
..|++++|..++..+.+.... . .+...+++++|...|... ...|...|++++|+..|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHH
Confidence 357788888888887764321 1 122258999999988765 5678889999999999998
Q ss_pred HHHCCC---CCC--hHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCC--Cc--cHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 005000 440 MLRASI---IPD--EVTYVGVLSACTHTGMVDEGREYFADMTIQHGI--EP--NEAHYGCMVDLLGRAGHLNEALEVIKN 510 (720)
Q Consensus 440 m~~~g~---~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p--~~~~~~~li~~~~~~g~~~eA~~~~~~ 510 (720)
..+... .+. ..+|..+...+...|++++|...|++..+-+.- .| ...++..+..+|.+ |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 776311 111 247888888999999999999999987643211 12 24678889999988 999999999988
Q ss_pred C-CCCC---C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc------chHHHHHhHhhhcCChhHHHHHHHH
Q 005000 511 M-PMKP---N----SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE------AVYVLLCNIYAACNRWDNFRELRQM 576 (720)
Q Consensus 511 ~-~~~p---~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~ 576 (720)
. .+.| + ..++..+...+...|++++|+..+++++++.|++. ..+..++.++...|++++|.+.+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6 1111 1 45788899999999999999999999999876543 2677788889999999999999998
Q ss_pred HH
Q 005000 577 IL 578 (720)
Q Consensus 577 m~ 578 (720)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 86
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.55 E-value=4.7e-07 Score=92.49 Aligned_cols=145 Identities=14% Similarity=0.049 Sum_probs=108.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHH
Q 005000 413 DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMV 492 (720)
Q Consensus 413 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 492 (720)
+...|..+...|.+.|++++|+..|++.++.. |+...+ ..+++.++- .-....|..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~~---------~~~~~~~~nla 203 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKAQ---------ALRLASHLNLA 203 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHHH---------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHHH---------HHHHHHHHHHH
Confidence 44567777777777888888888887777642 222100 001111110 01246778888
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHH
Q 005000 493 DLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNF 570 (720)
Q Consensus 493 ~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 570 (720)
.+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|++..++..++.++.+.|++++|
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999998887 4445 6889999999999999999999999999999999999999999999999999999
Q ss_pred -HHHHHHHHh
Q 005000 571 -RELRQMILD 579 (720)
Q Consensus 571 -~~~~~~m~~ 579 (720)
.+.++.|..
T Consensus 284 ~~~~~~~~~~ 293 (336)
T 1p5q_A 284 EKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 446666643
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.53 E-value=2.1e-06 Score=80.96 Aligned_cols=143 Identities=11% Similarity=-0.045 Sum_probs=76.8
Q ss_pred HHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhh
Q 005000 388 ALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDE 467 (720)
Q Consensus 388 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 467 (720)
.+...|.+.|++++|...|++...++...|..+...|...|++++|++.|++..+.. +.+...+..+..++...|++++
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~ 89 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDL 89 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHHH
Confidence 344455555555555555555555555555555555555555555555555554431 1122344444444455555555
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005000 468 GREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILEL 546 (720)
Q Consensus 468 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (720)
|.+.|+...+...-.+... +...| +...| ....|..+..++...|++++|...+++++++
T Consensus 90 A~~~~~~al~~~~~~~~~~--------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 90 AIKDLKEALIQLRGNQLID--------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHTTTTCSEEE--------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCccHHH--------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 5555544432110000000 00000 01223 2367888888999999999999999999999
Q ss_pred CCCC
Q 005000 547 DPDN 550 (720)
Q Consensus 547 ~p~~ 550 (720)
.|++
T Consensus 151 ~p~~ 154 (213)
T 1hh8_A 151 KSEP 154 (213)
T ss_dssp CCSG
T ss_pred Cccc
Confidence 9975
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.53 E-value=1.2e-06 Score=78.68 Aligned_cols=127 Identities=8% Similarity=-0.001 Sum_probs=94.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 005000 451 TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACR 528 (720)
Q Consensus 451 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~ 528 (720)
.+..+...+...|++++|...|+..... .+.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4455555666677777777777766532 1234666777777777888888888877775 3334 5778888889999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcchHHHH--HhHhhhcCChhHHHHHHHHHHh
Q 005000 529 VHRDAEMAEMAAKQILELDPDNEAVYVLL--CNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 529 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l--~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
..|++++|...+++++++.|++...+..+ +..+...|++++|.+.++....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999999988877544 4448888999999998877643
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.53 E-value=1.3e-06 Score=73.95 Aligned_cols=114 Identities=22% Similarity=0.225 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHH
Q 005000 450 VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMK-PNSIVWGALLGAC 527 (720)
Q Consensus 450 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~-p~~~~~~~ll~~~ 527 (720)
..+..+...+...|++++|.++++++.... +.+...+..+...|.+.|++++|...++++ ... .+..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 455556666677777777777777665321 234566677777777778888887777776 222 3677888888889
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcC
Q 005000 528 RVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACN 565 (720)
Q Consensus 528 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 565 (720)
...|++++|...++++++..|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 99999999999999999999999888888888876654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=1.2e-06 Score=74.94 Aligned_cols=117 Identities=15% Similarity=0.074 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005000 450 VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGAC 527 (720)
Q Consensus 450 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~ 527 (720)
..+..+...+...|++++|...|++..... +.+...+..+...|...|++++|.+.+++. ...| +...|..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 455556666667777777777777665321 234566777777777888888888877775 3334 577888888899
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChh
Q 005000 528 RVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWD 568 (720)
Q Consensus 528 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 568 (720)
...|++++|...++++++..|+++..+..++.++...|+++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999998888763
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.3e-06 Score=75.12 Aligned_cols=114 Identities=12% Similarity=0.075 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 005000 450 VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGA 526 (720)
Q Consensus 450 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~ 526 (720)
..+..+...+...|++++|...|++.. ...| +...+..+...|...|++++|.+.+++. ...| +...|..+...
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al---~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAI---KRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHH---TTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 455566666666777777777776664 1223 4566666777777777777777777665 2333 57788888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCC
Q 005000 527 CRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNR 566 (720)
Q Consensus 527 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 566 (720)
+...|++++|...++++++.+|++...+..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8899999999999999999999888888888888877664
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.50 E-value=4e-05 Score=76.11 Aligned_cols=228 Identities=11% Similarity=0.058 Sum_probs=167.1
Q ss_pred CChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccC--cHHHHHHHHHHHHHcCCCCChhHhhHHhhhh----hhc---
Q 005000 327 NRFREALTLFREMQTSNIRPDEF-TIVSILTACANLG--ALELGEWVKTYIDKNKVKNDIFVGNALIDMY----CKC--- 396 (720)
Q Consensus 327 g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~--~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y----~~~--- 396 (720)
...++|+.++..++.. .|+.. .++.--..+...+ .++.+......++... +.+..+|+.-...+ .+.
T Consensus 47 e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 47 EYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcccc
Confidence 3346788888887764 44433 3444444455566 7888888888777765 33445555443333 444
Q ss_pred CCHHHHHHHHHhcc---CCCHHHHHHHHHHHHHcCChH--HHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC------h
Q 005000 397 GDVEKAQRVFREML---RKDKFTWTAMIVGLAINGHGD--KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGM------V 465 (720)
Q Consensus 397 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~------~ 465 (720)
+++++++.+++.+. .++..+|+--.-.+.+.|.++ ++++.++++++.... |...|+.-.....+.|. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhH
Confidence 78999999999885 347788888888888889888 999999999986533 56677766666777776 8
Q ss_pred hhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005000 466 DEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNE-ALEVIKNM-PM----KPNSIVWGALLGACRVHRDAEMAEMA 539 (720)
Q Consensus 466 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~e-A~~~~~~~-~~----~p~~~~~~~ll~~~~~~g~~~~a~~~ 539 (720)
+++++.++.+... -+-|...|+.+..++.+.|+..+ +.++.++. .. ..++..+..+...+.+.|+.++|.++
T Consensus 203 ~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 203 DEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 8999999888732 24578889889999999998555 55677765 22 23788899999999999999999999
Q ss_pred HHHHHh-cCCCCcchHHHHHhH
Q 005000 540 AKQILE-LDPDNEAVYVLLCNI 560 (720)
Q Consensus 540 ~~~~~~-~~p~~~~~~~~l~~~ 560 (720)
++++.+ .+|.....+...+..
T Consensus 281 ~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHHhccChHHHHHHHHHHhh
Confidence 999996 899887777655543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.49 E-value=2.9e-06 Score=79.90 Aligned_cols=183 Identities=11% Similarity=0.033 Sum_probs=121.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcC
Q 005000 318 AMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCG 397 (720)
Q Consensus 318 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g 397 (720)
.....+...|++++|+..|++.... .|+........ ..... ..........+...|.+.|
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~-~~~~~-----------------~~~~~~~~~~lg~~~~~~g 68 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWT-NVDKN-----------------SEISSKLATELALAYKKNR 68 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHH-HSCTT-----------------SHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHh-hhcch-----------------hhhhHHHHHHHHHHHHHCC
Confidence 3455677888999999999888764 34432211110 00000 0011223445788899999
Q ss_pred CHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCC--hhhHHHH
Q 005000 398 DVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD-EVTYVGVLSACTHTGM--VDEGREY 471 (720)
Q Consensus 398 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~--~~~a~~~ 471 (720)
++++|...|++..+ .+...|..+...|...|++++|+..|++.++. .|+ ..++..+..++...|. .+.+...
T Consensus 69 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~ 146 (208)
T 3urz_A 69 NYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETD 146 (208)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999998753 36788999999999999999999999999885 454 4677777777765554 3445555
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 005000 472 FADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPNSIVWGALLG 525 (720)
Q Consensus 472 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~ll~ 525 (720)
+.... ...|....+..+...+...|++++|...|++. ...|+......+..
T Consensus 147 ~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 147 YKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 55442 22333334445666777889999999999986 67888776665554
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.49 E-value=1.9e-05 Score=78.81 Aligned_cols=202 Identities=11% Similarity=0.008 Sum_probs=139.1
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhH---hhHHhhhhhhcCCHHHHHHHHHhccCC
Q 005000 336 FREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFV---GNALIDMYCKCGDVEKAQRVFREMLRK 412 (720)
Q Consensus 336 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~---~~~li~~y~~~g~~~~A~~~~~~~~~~ 412 (720)
+..+......|+..++..+...+.-.-+ .+.......+... +...+..+.+.|++++|...+++..+.
T Consensus 34 ~s~~e~g~~~~~~~~l~~i~~~l~~~~~---------~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~ 104 (293)
T 3u3w_A 34 VSRIESGAVYPSMDILQGIAAKLQIPII---------HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKK 104 (293)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHTCCTH---------HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCcCHH---------HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 3344433356777776666655543211 1111111222222 223467788899999999999987542
Q ss_pred ---CH-----H-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCh----HHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 005000 413 ---DK-----F-TWTAMIVGLAINGHGDKSLDMFSQMLRASII-PDE----VTYVGVLSACTHTGMVDEGREYFADMTIQ 478 (720)
Q Consensus 413 ---~~-----~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 478 (720)
+. . .+..+...+...|++++|+..|++....... ++. .+++.+..++...|++++|..+|+++.+.
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 184 (293)
T 3u3w_A 105 EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQ 184 (293)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 11 1 3334666677788999999999999984332 232 26888999999999999999999988632
Q ss_pred c----CCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 005000 479 H----GIEPN-EAHYGCMVDLLGRAGHLNEALEVIKNM-------PMKPN-SIVWGALLGACRVHR-DAEMAEMAAKQIL 544 (720)
Q Consensus 479 ~----~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-------~~~p~-~~~~~~ll~~~~~~g-~~~~a~~~~~~~~ 544 (720)
. +..+. ..+|..+...|.+.|++++|.+.+++. ...+. ..+|..+..++...| ++++|...+++++
T Consensus 185 ~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 185 LEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 2 22222 347888999999999999999998876 11222 678899999999999 5799999999998
Q ss_pred hc
Q 005000 545 EL 546 (720)
Q Consensus 545 ~~ 546 (720)
++
T Consensus 265 ~i 266 (293)
T 3u3w_A 265 FF 266 (293)
T ss_dssp HH
T ss_pred HH
Confidence 75
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.49 E-value=8.1e-06 Score=77.06 Aligned_cols=156 Identities=8% Similarity=-0.044 Sum_probs=101.4
Q ss_pred CccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----cHHHHHHHHHHHHHcCCCCChhHhh
Q 005000 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG----ALELGEWVKTYIDKNKVKNDIFVGN 387 (720)
Q Consensus 312 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----~~~~a~~i~~~~~~~~~~~~~~~~~ 387 (720)
++.++..+...|...+++++|+.+|++..+.| +...+..+-..+.. + +.++|...+....+.+ +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 55667777777777777777777777777665 44455555555555 5 6777777777776654 455566
Q ss_pred HHhhhhhh----cCCHHHHHHHHHhccCCC-----HHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCChHHHHH
Q 005000 388 ALIDMYCK----CGDVEKAQRVFREMLRKD-----KFTWTAMIVGLAI----NGHGDKSLDMFSQMLRASIIPDEVTYVG 454 (720)
Q Consensus 388 ~li~~y~~----~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 454 (720)
.|..+|.. .+++++|...|++..+.+ +.++..|...|.. .++.++|+..|++..+. .++...+..
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~ 167 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYW 167 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHH
Confidence 66666666 677777777777775543 4667777777766 66777777777777665 223334555
Q ss_pred HHHHHHhc-C-----ChhhHHHHHHHHH
Q 005000 455 VLSACTHT-G-----MVDEGREYFADMT 476 (720)
Q Consensus 455 ll~a~~~~-g-----~~~~a~~~~~~m~ 476 (720)
|...|... | ++++|..+|+...
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~ 195 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSC 195 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHH
Confidence 55555432 2 6777777777665
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.48 E-value=3.8e-06 Score=83.95 Aligned_cols=162 Identities=10% Similarity=-0.021 Sum_probs=121.0
Q ss_pred HhhHHhhhhhhcCCHHHHHHHHHhccCC---CH------HHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--hH
Q 005000 385 VGNALIDMYCKCGDVEKAQRVFREMLRK---DK------FTWTAMIVGLAINGHGDKSLDMFSQMLRASI---IPD--EV 450 (720)
Q Consensus 385 ~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~ 450 (720)
.+...+..|...|++++|.+.+++..+. .. ..+..+...+...|++++|+..|++...... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3445677888999999999998866321 11 2234455667788999999999999886322 222 34
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHH---HcCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHhC-CC------CC-CH
Q 005000 451 TYVGVLSACTHTGMVDEGREYFADMTI---QHGIEPN--EAHYGCMVDLLGRAGHLNEALEVIKNM-PM------KP-NS 517 (720)
Q Consensus 451 t~~~ll~a~~~~g~~~~a~~~~~~m~~---~~~~~p~--~~~~~~li~~~~~~g~~~eA~~~~~~~-~~------~p-~~ 517 (720)
+++.+...+...|++++|..+|+++.+ ..+-.+. ...+..+...|.+.|++++|.+.+++. .+ .. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 788889999999999999999998863 2222221 258889999999999999999999876 11 11 16
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHHhc
Q 005000 518 IVWGALLGACRVHRDAEMA-EMAAKQILEL 546 (720)
Q Consensus 518 ~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~ 546 (720)
.+|..+...+...|++++| ...+++++++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 7888899999999999999 7778888764
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.48 E-value=5.5e-07 Score=89.45 Aligned_cols=191 Identities=9% Similarity=-0.038 Sum_probs=131.4
Q ss_pred ChhHhhHHhhhhhhcCCHHHHHHHHHhcc---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHH
Q 005000 382 DIFVGNALIDMYCKCGDVEKAQRVFREML---RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD-EVTYVGVLS 457 (720)
Q Consensus 382 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~ 457 (720)
+...+..+...|.+.|++++|...|++.. ..+...|..+...|...|++++|+..+++.++. .|+ ...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 34556677788888899999999888774 236778888888999999999999999988875 444 467778888
Q ss_pred HHHhcCChhhHHHHHHHHHHHcCCCccH-HHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005000 458 ACTHTGMVDEGREYFADMTIQHGIEPNE-AHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMA 536 (720)
Q Consensus 458 a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a 536 (720)
++...|++++|...|+...+. .|+. ..+...+....+.++...... .......++......+ ..+. .|+.++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l~-~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRLI-AAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHHH-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHHH-HHHHHHH
Confidence 899999999999999887632 2221 011111111111111111111 2222333344444333 3332 6889999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHhHhhhc-CChhHHHHHHHHHHhC
Q 005000 537 EMAAKQILELDPDNEAVYVLLCNIYAAC-NRWDNFRELRQMILDR 580 (720)
Q Consensus 537 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 580 (720)
.+.++++++++|++......+..++.+. +++++|.+++..+.+.
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999888888888888777 7799999999888653
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.48 E-value=1e-06 Score=80.54 Aligned_cols=120 Identities=13% Similarity=0.137 Sum_probs=86.1
Q ss_pred HhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCCH--H
Q 005000 460 THTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGA-CRVHRDA--E 534 (720)
Q Consensus 460 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~-~~~~g~~--~ 534 (720)
...|++++|...++...... +.+...|..+...|...|++++|.+.+++. ...| +...|..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 34567777777777765322 235567777777788888888888877776 2333 56677777777 6778887 8
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 535 MAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 535 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
+|...++++++.+|+++..+..++.+|...|++++|.+.++.+.+..
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 88888888888888888888888888888888888888888877643
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=4e-06 Score=83.47 Aligned_cols=152 Identities=7% Similarity=-0.046 Sum_probs=64.0
Q ss_pred HhhhhhhcCCHHHHHHHHHhcc--C-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHH-HHHHHHHHhcCC
Q 005000 389 LIDMYCKCGDVEKAQRVFREML--R-KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTY-VGVLSACTHTGM 464 (720)
Q Consensus 389 li~~y~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~~~~g~ 464 (720)
+...+.+.|++++|...|++.. . .+...+..+...+.+.|++++|+..+++.... .|+.... ......+...+.
T Consensus 123 ~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~~~~~ 200 (287)
T 3qou_A 123 QAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELLXQAA 200 (287)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHHhhcc
Confidence 3333444444444444444432 1 13334444444444444444444444444332 2222211 111112333444
Q ss_pred hhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCCHHHHHHHH
Q 005000 465 VDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN---SIVWGALLGACRVHRDAEMAEMAA 540 (720)
Q Consensus 465 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~ 540 (720)
.++|...+++.... -+.+...+..+..+|...|++++|++.++++ ...|+ ...+..++..+...|+.+.|...+
T Consensus 201 ~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~ 278 (287)
T 3qou_A 201 DTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXY 278 (287)
T ss_dssp SCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHH
Confidence 44444444444321 1223444444555555555555555555444 22221 344555555555555555555555
Q ss_pred HHHH
Q 005000 541 KQIL 544 (720)
Q Consensus 541 ~~~~ 544 (720)
++.+
T Consensus 279 r~al 282 (287)
T 3qou_A 279 RRQL 282 (287)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=4.5e-07 Score=77.02 Aligned_cols=93 Identities=16% Similarity=0.033 Sum_probs=81.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcC
Q 005000 488 YGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACN 565 (720)
Q Consensus 488 ~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 565 (720)
+..+...+.+.|++++|...+++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|...|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 445677788899999999999887 4455 78889999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhC
Q 005000 566 RWDNFRELRQMILDR 580 (720)
Q Consensus 566 ~~~~a~~~~~~m~~~ 580 (720)
++++|.+.+++..+.
T Consensus 100 ~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 100 NANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999988764
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.43 E-value=9.7e-07 Score=79.57 Aligned_cols=95 Identities=13% Similarity=0.101 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhh
Q 005000 485 EAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYA 562 (720)
Q Consensus 485 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 562 (720)
...+..+...|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344445555555556666665555554 2233 45556666666666666666666666666666666666666666666
Q ss_pred hcCChhHHHHHHHHHHh
Q 005000 563 ACNRWDNFRELRQMILD 579 (720)
Q Consensus 563 ~~g~~~~a~~~~~~m~~ 579 (720)
..|++++|.+.+++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 66666666666665544
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.42 E-value=8e-07 Score=76.23 Aligned_cols=94 Identities=9% Similarity=0.006 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc-------hHHH
Q 005000 486 AHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA-------VYVL 556 (720)
Q Consensus 486 ~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~ 556 (720)
..+..+...|.+.|++++|++.|++. .+.| +...|..+..++...|++++|+..++++++++|++.. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45667888899999999999999886 4556 6788999999999999999999999999999887653 6778
Q ss_pred HHhHhhhcCChhHHHHHHHHHHh
Q 005000 557 LCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 557 l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
++.+|...|++++|.+.+++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 89999999999999999988765
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.40 E-value=2e-06 Score=75.98 Aligned_cols=105 Identities=10% Similarity=-0.015 Sum_probs=88.0
Q ss_pred CCCCh-HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 005000 445 IIPDE-VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWG 521 (720)
Q Consensus 445 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~ 521 (720)
+.|+. ..+..+...+...|++++|...|+.+... -+.+...|..+..+|.+.|++++|++.|++. .+.| ++..|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 45554 46777788889999999999999998732 1336788889999999999999999999987 4555 578899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 005000 522 ALLGACRVHRDAEMAEMAAKQILELDPDNE 551 (720)
Q Consensus 522 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 551 (720)
.+..++...|++++|+..+++++++.|+++
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999853
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.38 E-value=2.9e-06 Score=73.55 Aligned_cols=98 Identities=14% Similarity=0.054 Sum_probs=82.3
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhH
Q 005000 483 PNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNI 560 (720)
Q Consensus 483 p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 560 (720)
.+...+..+...+.+.|++++|...|++. ...| +...|..+...+...|++++|...++++++++|+++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 35667777788888888888888888776 3344 577888888889999999999999999999999999999999999
Q ss_pred hhhcCChhHHHHHHHHHHhC
Q 005000 561 YAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 561 ~~~~g~~~~a~~~~~~m~~~ 580 (720)
|...|++++|.+.++...+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999998888764
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.8e-06 Score=71.48 Aligned_cols=97 Identities=14% Similarity=0.058 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CcchHHHHHhH
Q 005000 485 EAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPD--NEAVYVLLCNI 560 (720)
Q Consensus 485 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 560 (720)
...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++++..|+ +...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 345556777777788888888887776 2333 6778888888899999999999999999999999 88999999999
Q ss_pred hhhc-CChhHHHHHHHHHHhCC
Q 005000 561 YAAC-NRWDNFRELRQMILDRG 581 (720)
Q Consensus 561 ~~~~-g~~~~a~~~~~~m~~~~ 581 (720)
|... |++++|.+.++......
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 9999 99999999998887654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.36 E-value=5.5e-06 Score=80.43 Aligned_cols=181 Identities=12% Similarity=0.006 Sum_probs=130.9
Q ss_pred hcCCHHHHHHHHHhccC--C-CHHHHHHH-------HHHHHHcCChHHHHHHHHHHHHCCCCCCh---------------
Q 005000 395 KCGDVEKAQRVFREMLR--K-DKFTWTAM-------IVGLAINGHGDKSLDMFSQMLRASIIPDE--------------- 449 (720)
Q Consensus 395 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~--------------- 449 (720)
..++.+.|.+.|.+... | ....|+.+ ...+...++..+++..+++-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46788888888888753 2 45678777 4556655666666665555443 33332
Q ss_pred -------HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH----H
Q 005000 450 -------VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNS----I 518 (720)
Q Consensus 450 -------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~----~ 518 (720)
.........+...|++++|.+.|+.+. ...|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~---~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAP---VAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSC---CTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 122335566788899999999998764 23454436666777889999999999999877433433 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC-CcchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 519 VWGALLGACRVHRDAEMAEMAAKQILELD--PD-NEAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 519 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
.+..+..++...|++++|+..++++.... |. .+.....++.++.+.|+.++|...++++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 67788888999999999999999998543 54 4457788999999999999999999998763
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.36 E-value=5.4e-06 Score=77.29 Aligned_cols=93 Identities=12% Similarity=-0.026 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-C---CCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CC----c
Q 005000 487 HYGCMVDLLGRAGHLNEALEVIKNM-P---MKP-N----SIVWGALLGACRVHRDAEMAEMAAKQILELDP--DN----E 551 (720)
Q Consensus 487 ~~~~li~~~~~~g~~~eA~~~~~~~-~---~~p-~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p--~~----~ 551 (720)
.+..+...|...|++++|.+.+++. . ..+ + ...+..+...+...|++++|...+++++++.+ .+ .
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 3444555555555555555555443 0 011 1 23455666666777777777777777665421 11 1
Q ss_pred chHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 552 AVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 552 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
..+..++.+|...|++++|.+.+++..+
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2356777778888888888777776654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.36 E-value=2.9e-06 Score=72.80 Aligned_cols=99 Identities=11% Similarity=0.085 Sum_probs=89.9
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHh
Q 005000 482 EPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCN 559 (720)
Q Consensus 482 ~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 559 (720)
..+...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 335677888999999999999999999987 5555 78889999999999999999999999999999999999999999
Q ss_pred HhhhcCChhHHHHHHHHHHhC
Q 005000 560 IYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 560 ~~~~~g~~~~a~~~~~~m~~~ 580 (720)
+|.+.|++++|.+.+++..+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999988763
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=2.5e-06 Score=79.54 Aligned_cols=170 Identities=8% Similarity=-0.078 Sum_probs=104.8
Q ss_pred hhhhhhcCCHHHHHHHHHhccCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChh
Q 005000 390 IDMYCKCGDVEKAQRVFREMLRK---DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVD 466 (720)
Q Consensus 390 i~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 466 (720)
+......|+++.|.+.|+..... ....|..+...+...|++++|+..|++.+... |+...+...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~----------- 77 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ----------- 77 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH-----------
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh-----------
Confidence 33344456666666665533221 34466677777788888888888888877632 221100000
Q ss_pred hHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005000 467 EGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQIL 544 (720)
Q Consensus 467 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 544 (720)
....-.. ......|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|++++|...+++++
T Consensus 78 ----~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 78 ----ILLDKKK----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp ----HHHHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ----hHHHHHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 0000000 001356777888888889999998888876 3344 67889999999999999999999999999
Q ss_pred hcCCCCcchHHHHHhHhhhcCChhHHH-HHHHHHHhC
Q 005000 545 ELDPDNEAVYVLLCNIYAACNRWDNFR-ELRQMILDR 580 (720)
Q Consensus 545 ~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~ 580 (720)
+++|+++.++..++.++...|+.+++. ..++.|...
T Consensus 150 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 150 SLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999888877 455555443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.35 E-value=1.5e-06 Score=93.21 Aligned_cols=118 Identities=7% Similarity=-0.019 Sum_probs=94.2
Q ss_pred HHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 005000 457 SACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAE 534 (720)
Q Consensus 457 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~ 534 (720)
..+...|++++|.+.|++..+. -+.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 3456678888888888877632 1234778888888889999999999988887 4555 6788999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHhH--hhhcCChhHHHHHHHH
Q 005000 535 MAEMAAKQILELDPDNEAVYVLLCNI--YAACNRWDNFRELRQM 576 (720)
Q Consensus 535 ~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 576 (720)
+|+..++++++++|++...+..++.+ +.+.|++++|.+.+++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999888 8889999999998774
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=7.3e-07 Score=78.83 Aligned_cols=108 Identities=9% Similarity=-0.035 Sum_probs=82.6
Q ss_pred CCCh-HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 005000 446 IPDE-VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGA 522 (720)
Q Consensus 446 ~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ 522 (720)
.|+. ..+..+...+...|++++|...|+.+... -+.+...|..+..+|.+.|++++|++.|++. ...| +...|..
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 4433 35566667777888888888888877632 1335677777888888888888888888876 3445 5678888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 005000 523 LLGACRVHRDAEMAEMAAKQILELDPDNEAVYV 555 (720)
Q Consensus 523 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 555 (720)
+..++...|++++|...+++++++.|+++....
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 999999999999999999999999998776543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.34 E-value=4.7e-06 Score=77.75 Aligned_cols=153 Identities=12% Similarity=0.005 Sum_probs=99.6
Q ss_pred hcCCHHHHHH---HHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCC-hHHHHHHHHHHHhcCChh
Q 005000 395 KCGDVEKAQR---VFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLR----ASIIPD-EVTYVGVLSACTHTGMVD 466 (720)
Q Consensus 395 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~t~~~ll~a~~~~g~~~ 466 (720)
..|++++|.+ .+..-+......+..+...+...|++++|+..+++... .+..|. ..++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4577777777 44433333455677777777778888888887777665 111222 245666777788888888
Q ss_pred hHHHHHHHHHHH---cCCCc--cHHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCH
Q 005000 467 EGREYFADMTIQ---HGIEP--NEAHYGCMVDLLGRAGHLNEALEVIKNM----PMKPN----SIVWGALLGACRVHRDA 533 (720)
Q Consensus 467 ~a~~~~~~m~~~---~~~~p--~~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~p~----~~~~~~ll~~~~~~g~~ 533 (720)
+|...+++.... .+-.| ....+..+...+...|++++|.+.+++. ...++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 888888776533 22121 2345677788888888888888887765 11112 23456777888889999
Q ss_pred HHHHHHHHHHHhcC
Q 005000 534 EMAEMAAKQILELD 547 (720)
Q Consensus 534 ~~a~~~~~~~~~~~ 547 (720)
++|...+++++++.
T Consensus 164 ~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 164 LEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99998888887753
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.34 E-value=3.9e-06 Score=81.47 Aligned_cols=138 Identities=9% Similarity=-0.061 Sum_probs=98.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCcc--HHHHHHHHHHH
Q 005000 418 TAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN--EAHYGCMVDLL 495 (720)
Q Consensus 418 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~ 495 (720)
-.....+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+... ... .|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~-~~~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAG-KWP-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGG-GCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhh-ccC-CcccHHHHHHHHHHHH
Confidence 34455667778888888888776654 3554444445557778888888888887542 111 121 23567788889
Q ss_pred HhcCCHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhH
Q 005000 496 GRAGHLNEALEVIKNMP---MKPN--SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNI 560 (720)
Q Consensus 496 ~~~g~~~eA~~~~~~~~---~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 560 (720)
.+.|++++|++.|++.. ..|. ...+.....+++..|+.++|...++++++.+|+ +.+...|.+.
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~ 250 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKDP 250 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHCT
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhCC
Confidence 99999999999998872 2243 346778888899999999999999999999998 7666666443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.33 E-value=4.6e-06 Score=76.07 Aligned_cols=127 Identities=8% Similarity=0.052 Sum_probs=86.8
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHH-HHhcCCH--H
Q 005000 426 INGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL-LGRAGHL--N 502 (720)
Q Consensus 426 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~-~~~~g~~--~ 502 (720)
..|++++|+..+++..... +.+...+..+...+...|++++|...|+++.... +.+...+..+..+ |.+.|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcchH
Confidence 3456666666666666542 2244566666677777777777777777765322 2245566667777 6677887 8
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 005000 503 EALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYV 555 (720)
Q Consensus 503 eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 555 (720)
+|.+.++++ ...| +...|..+...+...|++++|...+++++++.|+++....
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHH
Confidence 888888776 3344 5778888888999999999999999999999998865443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.33 E-value=1.5e-06 Score=76.13 Aligned_cols=92 Identities=13% Similarity=0.038 Sum_probs=71.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------
Q 005000 488 YGCMVDLLGRAGHLNEALEVIKNM-PMKPN-------------SIVWGALLGACRVHRDAEMAEMAAKQILEL------- 546 (720)
Q Consensus 488 ~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------- 546 (720)
+......+.+.|++++|++.|++. .+.|+ ...|..+..++...|++++|+..+++++++
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 334455556666666666666654 22222 338888888899999999999999999988
Q ss_pred CCCCcchH----HHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 547 DPDNEAVY----VLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 547 ~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
+|++...| ..++.++...|++++|.+.+++..+
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99998888 9999999999999999999988865
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=4.2e-06 Score=69.92 Aligned_cols=93 Identities=16% Similarity=0.184 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhc
Q 005000 487 HYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAAC 564 (720)
Q Consensus 487 ~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 564 (720)
.+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|...
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3444455555555555555555554 2222 4455555555555566666666666666666666555566666666666
Q ss_pred CChhHHHHHHHHHHh
Q 005000 565 NRWDNFRELRQMILD 579 (720)
Q Consensus 565 g~~~~a~~~~~~m~~ 579 (720)
|++++|.+.++...+
T Consensus 86 ~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 86 NRFEEAKRTYEEGLK 100 (118)
T ss_dssp TCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHH
Confidence 666666665555543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.32 E-value=2.9e-06 Score=76.21 Aligned_cols=63 Identities=16% Similarity=0.137 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 517 SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 517 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
...|..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 467888888899999999999999999999999999999999999999999999999888765
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.32 E-value=4.3e-06 Score=70.63 Aligned_cols=96 Identities=25% Similarity=0.305 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhh
Q 005000 485 EAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYA 562 (720)
Q Consensus 485 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 562 (720)
...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888899999999999999999987 3334 67889999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhC
Q 005000 563 ACNRWDNFRELRQMILDR 580 (720)
Q Consensus 563 ~~g~~~~a~~~~~~m~~~ 580 (720)
..|++++|.+.++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999988764
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.2e-05 Score=70.51 Aligned_cols=111 Identities=10% Similarity=-0.003 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 005000 450 VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN----EAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGAL 523 (720)
Q Consensus 450 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l 523 (720)
..+..+...+...|++++|...|++.. ...|+ ...+..+...|.+.|++++|.+.+++. ...| +...|..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQAL---GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 445555555566666666666666554 23343 455666666777777777777777665 2334 56677788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhh
Q 005000 524 LGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAA 563 (720)
Q Consensus 524 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 563 (720)
..++...|++++|...++++++++|++...+..+..+..+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 8888888888888888888888888887777666666543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.29 E-value=6.2e-06 Score=72.32 Aligned_cols=98 Identities=13% Similarity=0.042 Sum_probs=89.4
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 005000 483 PNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN----SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLL 557 (720)
Q Consensus 483 p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 557 (720)
.+...+..+...+.+.|++++|.+.+++. ...|+ ...|..+...+...|++++|...++++++..|+++..+..+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 35677888999999999999999999987 66776 67888899999999999999999999999999999999999
Q ss_pred HhHhhhcCChhHHHHHHHHHHhC
Q 005000 558 CNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 558 ~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
+.+|...|++++|.+.+++..+.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Confidence 99999999999999999988763
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=9.8e-06 Score=67.57 Aligned_cols=110 Identities=15% Similarity=0.097 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005000 450 VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGAC 527 (720)
Q Consensus 450 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~ 527 (720)
..+..+...+...|++++|...|+...... +.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 345555566666777777777777665321 224566667777777777777777777765 3334 577888888889
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHh
Q 005000 528 RVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIY 561 (720)
Q Consensus 528 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 561 (720)
...|++++|...++++++.+|+++..+..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999999999999998887777766553
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=1e-05 Score=68.96 Aligned_cols=97 Identities=10% Similarity=0.084 Sum_probs=87.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHh
Q 005000 484 NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIY 561 (720)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 561 (720)
+...+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4567788889999999999999999987 3344 6888999999999999999999999999999999999999999999
Q ss_pred hhcCChhHHHHHHHHHHhC
Q 005000 562 AACNRWDNFRELRQMILDR 580 (720)
Q Consensus 562 ~~~g~~~~a~~~~~~m~~~ 580 (720)
...|++++|.+.++...+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999988764
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.27 E-value=3.3e-06 Score=73.89 Aligned_cols=108 Identities=12% Similarity=-0.017 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 005000 451 TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACR 528 (720)
Q Consensus 451 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~ 528 (720)
.+..+...+...|++++|...|+.+.... +.+...|..+..+|.+.|++++|.+.|++. ...| ++..|..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 44556666777788888888887776321 235667777888888888888888888876 3444 5677888889999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcchHHHHHhH
Q 005000 529 VHRDAEMAEMAAKQILELDPDNEAVYVLLCNI 560 (720)
Q Consensus 529 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 560 (720)
..|++++|...+++++++.|+++........+
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 99999999999999999999887665544333
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.26 E-value=5.2e-06 Score=70.79 Aligned_cols=109 Identities=9% Similarity=-0.037 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 005000 451 TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACR 528 (720)
Q Consensus 451 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~ 528 (720)
.+..+...+...|++++|...|++..+.. +.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 44555566667777777777777665321 234566777777777888888888777776 3445 5778888888899
Q ss_pred hcCCHHHHHHHHHHHHhcC------CCCcchHHHHHhHh
Q 005000 529 VHRDAEMAEMAAKQILELD------PDNEAVYVLLCNIY 561 (720)
Q Consensus 529 ~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 561 (720)
..|++++|...++++++++ |++......+..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 9999999999999999988 77776666665554
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.24 E-value=7.3e-06 Score=73.70 Aligned_cols=107 Identities=13% Similarity=0.006 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005000 450 VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGAC 527 (720)
Q Consensus 450 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~ 527 (720)
..+..+...+...|++++|+..|++..+.. +.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 456666777777888888888887776321 235677778888888888888888888876 4445 578899999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 005000 528 RVHRDAEMAEMAAKQILELDPDNEAVYVLLC 558 (720)
Q Consensus 528 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 558 (720)
...|++++|...++++++++|++...+...+
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 9999999999999999999999988665554
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.22 E-value=1e-05 Score=86.38 Aligned_cols=162 Identities=11% Similarity=0.041 Sum_probs=111.4
Q ss_pred cCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHH
Q 005000 396 CGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYF 472 (720)
Q Consensus 396 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 472 (720)
.+++++|...|+.... .....|..+...+.+.|++++|+..|++.++. .|+...+ . -+...
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~--- 310 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESK--- 310 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHH---
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHH---
Confidence 3444445544443322 13456777788888888888888888887763 2221100 0 00100
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 005000 473 ADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDN 550 (720)
Q Consensus 473 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 550 (720)
... .-....|..+..+|.+.|++++|++.+++. .+.| +...|..+..++...|++++|+..++++++++|++
T Consensus 311 -~~~-----~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~ 384 (457)
T 1kt0_A 311 -ASE-----SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN 384 (457)
T ss_dssp -HHH-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred -HHH-----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 010 012457778888999999999999999887 4445 68889999999999999999999999999999999
Q ss_pred cchHHHHHhHhhhcCChhHHHH-HHHHHHh
Q 005000 551 EAVYVLLCNIYAACNRWDNFRE-LRQMILD 579 (720)
Q Consensus 551 ~~~~~~l~~~~~~~g~~~~a~~-~~~~m~~ 579 (720)
..++..++.++.+.|+++++.+ .++.|..
T Consensus 385 ~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 385 KAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998875 4555543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=9.7e-05 Score=74.15 Aligned_cols=193 Identities=15% Similarity=0.103 Sum_probs=117.9
Q ss_pred hHhhHHhhhhhhcC-CHHHHHHHHHhccC---CCHHHHHHHHHHHHHc-C-ChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 005000 384 FVGNALIDMYCKCG-DVEKAQRVFREMLR---KDKFTWTAMIVGLAIN-G-HGDKSLDMFSQMLRASIIPDEVTYVGVLS 457 (720)
Q Consensus 384 ~~~~~li~~y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 457 (720)
.+|+.--..+...| .++++++.++.+.. ++..+|+.-...+.+. + ++++++++++++.+.. .-|..+|..-..
T Consensus 89 taWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~w 167 (349)
T 3q7a_A 89 TVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHW 167 (349)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 33444334444445 46777777776643 3555666665555554 5 6777777777777643 224455555555
Q ss_pred HHHhcCChh--------hHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC-------HHHHHHHHHhC-CCCC-CHHHH
Q 005000 458 ACTHTGMVD--------EGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGH-------LNEALEVIKNM-PMKP-NSIVW 520 (720)
Q Consensus 458 a~~~~g~~~--------~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~-------~~eA~~~~~~~-~~~p-~~~~~ 520 (720)
...+.|.++ +++++++++.+. -.-|...|+....++.+.++ ++++++.++++ ...| |...|
T Consensus 168 vl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW 245 (349)
T 3q7a_A 168 LYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAW 245 (349)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 555555555 777777777632 13356667777777777665 67777777765 3445 67788
Q ss_pred HHHHHHHHhcCCH--------------------HHHHHHHHHHHhcC------CCCcchHHHHHhHhhhcCChhHHHHHH
Q 005000 521 GALLGACRVHRDA--------------------EMAEMAAKQILELD------PDNEAVYVLLCNIYAACNRWDNFRELR 574 (720)
Q Consensus 521 ~~ll~~~~~~g~~--------------------~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~ 574 (720)
+-+-..+.+.|+. .........+.... +.++.+...|+++|...|+.++|.+++
T Consensus 246 ~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~ 325 (349)
T 3q7a_A 246 NYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVF 325 (349)
T ss_dssp HHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 7777777666543 22223333332222 456677889999999999999999999
Q ss_pred HHHHh
Q 005000 575 QMILD 579 (720)
Q Consensus 575 ~~m~~ 579 (720)
+.+.+
T Consensus 326 ~~l~~ 330 (349)
T 3q7a_A 326 EKLSS 330 (349)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99864
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.17 E-value=4.3e-05 Score=68.30 Aligned_cols=129 Identities=10% Similarity=-0.043 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 005000 415 FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL 494 (720)
Q Consensus 415 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 494 (720)
..|..+...+...|++++|+..|++..... +.+..++..+...+...|++++|...+++.... .+.+...+..+...
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 345556666666777777777777666542 224456666666677777777777777766532 12345666777777
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhc
Q 005000 495 LGRAGHLNEALEVIKNM-PMKP-NSIVWG--ALLGACRVHRDAEMAEMAAKQILEL 546 (720)
Q Consensus 495 ~~~~g~~~eA~~~~~~~-~~~p-~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (720)
|.+.|++++|.+.+++. ...| +...+. .++..+...|++++|...+++..++
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 77777777777777765 2333 344443 3333366677788887777776543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.15 E-value=1.2e-05 Score=82.05 Aligned_cols=97 Identities=18% Similarity=0.028 Sum_probs=83.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005000 484 NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN----------------SIVWGALLGACRVHRDAEMAEMAAKQILEL 546 (720)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (720)
+...+..+...|.+.|++++|.+.|++. ...|+ ...|..+..++...|++++|+..+++++++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456667777777888888888877776 33332 578999999999999999999999999999
Q ss_pred CCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 547 DPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 547 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
+|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 226 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 226 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998764
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.7e-06 Score=72.89 Aligned_cols=82 Identities=16% Similarity=0.117 Sum_probs=45.9
Q ss_pred cCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHH
Q 005000 498 AGHLNEALEVIKNM-PM---KP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRE 572 (720)
Q Consensus 498 ~g~~~eA~~~~~~~-~~---~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 572 (720)
.|++++|+..|++. .. .| +...|..+...+...|++++|+..++++++++|+++.++..++.+|...|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 34444555555444 22 13 234555566666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHh
Q 005000 573 LRQMILD 579 (720)
Q Consensus 573 ~~~~m~~ 579 (720)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.14 E-value=1.2e-05 Score=69.52 Aligned_cols=100 Identities=7% Similarity=-0.098 Sum_probs=75.3
Q ss_pred ChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 005000 448 DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLG 525 (720)
Q Consensus 448 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~ 525 (720)
+...+..+...+...|++++|...|+...... +.+...|..+...|.+.|++++|...+++. ...| +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 44566667777777777777777777765321 234667777778888888888888887776 3344 5778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC
Q 005000 526 ACRVHRDAEMAEMAAKQILELDPD 549 (720)
Q Consensus 526 ~~~~~g~~~~a~~~~~~~~~~~p~ 549 (720)
.+...|++++|...+++++++.|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 899999999999999999998887
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.13 E-value=8.3e-06 Score=69.69 Aligned_cols=89 Identities=12% Similarity=0.068 Sum_probs=58.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---cchHHHHHhHhh
Q 005000 491 MVDLLGRAGHLNEALEVIKNM-PMKPN-S---IVWGALLGACRVHRDAEMAEMAAKQILELDPDN---EAVYVLLCNIYA 562 (720)
Q Consensus 491 li~~~~~~g~~~eA~~~~~~~-~~~p~-~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~ 562 (720)
+...+.+.|++++|.+.|++. ...|+ . ..|..+..++...|++++|...++++++..|++ +.++..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 444555666666666666654 22232 2 356666666777777777777777777777776 556777777777
Q ss_pred hcCChhHHHHHHHHHHh
Q 005000 563 ACNRWDNFRELRQMILD 579 (720)
Q Consensus 563 ~~g~~~~a~~~~~~m~~ 579 (720)
..|++++|.+.++.+.+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777777776655
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.10 E-value=1.3e-05 Score=79.39 Aligned_cols=106 Identities=7% Similarity=-0.094 Sum_probs=79.7
Q ss_pred ChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 005000 448 DEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLG 525 (720)
Q Consensus 448 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~ 525 (720)
+...+..+...+...|++++|...|+...... +.+...|..+...|.+.|++++|.+.+++. ...| +...|..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34566777778888888888888888876321 225677778888888888888888888876 4555 5677788888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 005000 526 ACRVHRDAEMAEMAAKQILELDPDNEAVYV 555 (720)
Q Consensus 526 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 555 (720)
++...|++++|...++++++++|+++..+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 110 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFG 110 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHH
Confidence 888888888888888888888887654443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.10 E-value=4.1e-05 Score=71.18 Aligned_cols=95 Identities=14% Similarity=-0.018 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-C----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005000 485 EAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-N----------------SIVWGALLGACRVHRDAEMAEMAAKQILEL 546 (720)
Q Consensus 485 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 546 (720)
...+..+...+.+.|++++|.+.|++. ...| + ...|..+..++...|++++|+..+++++++
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 345666777778888888888888775 2222 2 278888999999999999999999999999
Q ss_pred CCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 547 DPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 547 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
+|+++.++..++.+|...|++++|.+.+++..+
T Consensus 118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 999999999999999999999999999998875
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.10 E-value=2.1e-05 Score=81.08 Aligned_cols=138 Identities=9% Similarity=0.081 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCc-cHHHHHHHH
Q 005000 414 KFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP-NEAHYGCMV 492 (720)
Q Consensus 414 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li 492 (720)
...|..+...+.+.|++++|++.|++.++. .|+. ......+++ ....| +...|..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~----------~~~~~~~~~----------~~~~~~~~~~~~nla 280 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS----------RAAAEDADG----------AKLQPVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHH----------HHHSCHHHH----------GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcC----------ccccChHHH----------HHHHHHHHHHHHHHH
Confidence 345777777888888888888888877652 0100 000011111 01122 456788899
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHH
Q 005000 493 DLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNF 570 (720)
Q Consensus 493 ~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 570 (720)
.+|.+.|++++|++.+++. ...| +...|..+..++...|++++|...++++++++|++..++..++.++...++.+++
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987 5666 6788999999999999999999999999999999999999999999999988887
Q ss_pred HHH
Q 005000 571 REL 573 (720)
Q Consensus 571 ~~~ 573 (720)
.+.
T Consensus 361 ~k~ 363 (370)
T 1ihg_A 361 EKA 363 (370)
T ss_dssp HHC
T ss_pred HHH
Confidence 653
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.08 E-value=1.2e-05 Score=68.54 Aligned_cols=96 Identities=11% Similarity=0.107 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------cchHH
Q 005000 485 EAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDN-------EAVYV 555 (720)
Q Consensus 485 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~ 555 (720)
...+..+...+...|++++|...+++. ...| +...|..+...+...|++++|...++++++..|++ +.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345667777888888888888888876 2333 67788888889999999999999999999988766 77889
Q ss_pred HHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 556 LLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 556 ~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
.++.+|...|++++|.+.++.+.+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999988763
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=0.0011 Score=66.38 Aligned_cols=231 Identities=12% Similarity=0.017 Sum_probs=157.2
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccC-cHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhc-C-
Q 005000 322 GYLRVNRFREALTLFREMQTSNIRPDE-FTIVSILTACANLG-ALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKC-G- 397 (720)
Q Consensus 322 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~-~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~-g- 397 (720)
...+.+..++|++++.+++.. .|+. ..++.--..+...+ .++.+......+++.. +.+..+|+.-...+.+. +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCC
Confidence 334455567788888888775 3433 33444444445556 4888888888887765 44566676666666665 6
Q ss_pred CHHHHHHHHHhccCC---CHHHHHHHHHHHHHcCChH--------HHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC--
Q 005000 398 DVEKAQRVFREMLRK---DKFTWTAMIVGLAINGHGD--------KSLDMFSQMLRASIIPDEVTYVGVLSACTHTGM-- 464 (720)
Q Consensus 398 ~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~-- 464 (720)
++++++++++.+.+. |..+|+--.-.+.+.|.++ ++++.++++++..+ -|...|+.....+.+.+.
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCC
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccc
Confidence 788999999998754 5667776665555555555 89999999998643 366778877777777776
Q ss_pred -----hhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH--------------------HHHHHHHHhC-CC-----
Q 005000 465 -----VDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHL--------------------NEALEVIKNM-PM----- 513 (720)
Q Consensus 465 -----~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~--------------------~eA~~~~~~~-~~----- 513 (720)
+++++++++++... .+-|...|+.+-.++.+.|+. .+..++..++ ..
T Consensus 219 ~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPED 296 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSS
T ss_pred cchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccc
Confidence 68888888887632 234677788777788877764 3444555444 11
Q ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hcCCCCcchHHHHH
Q 005000 514 --KPNSIVWGALLGACRVHRDAEMAEMAAKQIL-ELDPDNEAVYVLLC 558 (720)
Q Consensus 514 --~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~l~ 558 (720)
.+....+..|+..|...|+.++|.++++.+. +.+|-....+...+
T Consensus 297 ~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 297 TPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 2577888999999999999999999999987 67887655444433
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00073 Score=67.46 Aligned_cols=117 Identities=9% Similarity=0.029 Sum_probs=53.6
Q ss_pred HhcCChh-HHHHHHHHHHHCCCCCCHHHH-HHHHHHHhccCc----------HHHHHHHHHHHHHcCCCCChhHhhHHhh
Q 005000 324 LRVNRFR-EALTLFREMQTSNIRPDEFTI-VSILTACANLGA----------LELGEWVKTYIDKNKVKNDIFVGNALID 391 (720)
Q Consensus 324 ~~~g~~~-~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~~~----------~~~a~~i~~~~~~~~~~~~~~~~~~li~ 391 (720)
.+.|.++ +|+.++..+... .|+..|. +.--..+...+. ++.+..++..+.... +-+..+|+.-.-
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3445543 677777777764 4544332 211111111111 334444444444432 233444444444
Q ss_pred hhhhcC--CHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHC
Q 005000 392 MYCKCG--DVEKAQRVFREMLR---KDKFTWTAMIVGLAINGH-GDKSLDMFSQMLRA 443 (720)
Q Consensus 392 ~y~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~ 443 (720)
.+.+.| .++++..+++.+.+ +|..+|+--.-.+...|. .+++++.++++++.
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~ 174 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR 174 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 444444 25555555555532 244455554444444554 35555555555554
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.07 E-value=3.3e-05 Score=81.72 Aligned_cols=164 Identities=7% Similarity=-0.097 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCChH----HHHHHHHHHHhcCChhhHHHHHHHHHHH---cCCCc-cHH
Q 005000 416 TWTAMIVGLAINGHGDKSLDMFSQMLRAS-IIPDEV----TYVGVLSACTHTGMVDEGREYFADMTIQ---HGIEP-NEA 486 (720)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~~p-~~~ 486 (720)
++..+...|...|++++|.+.+.++...- ..++.. ..+.+-..+...|+.+++..+++..... .+..+ ...
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 35667788888888888888888765521 112221 2222233344568888888888776432 22222 356
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-----C--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CC----c
Q 005000 487 HYGCMVDLLGRAGHLNEALEVIKNM-----P--MKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDP---DN----E 551 (720)
Q Consensus 487 ~~~~li~~~~~~g~~~eA~~~~~~~-----~--~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p---~~----~ 551 (720)
.+..+...|...|++++|.+++++. . .+| ...++..++..|...|++++|...+++++...+ ++ .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 7788899999999999999998875 1 223 245778888899999999999999999887532 22 2
Q ss_pred chHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 552 AVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 552 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
..+..++.++...|+|++|.+.+....+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4567788888999999999887766643
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.05 E-value=1.8e-05 Score=84.85 Aligned_cols=120 Identities=8% Similarity=0.013 Sum_probs=75.3
Q ss_pred hhHHhhhhhhcCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHh
Q 005000 386 GNALIDMYCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP-DEVTYVGVLSACTH 461 (720)
Q Consensus 386 ~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~ 461 (720)
+..+...|.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++|++.+++..+. .| +..++..+..++..
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 44566677788888888888877642 35667777777777788888888888777775 33 34566667777777
Q ss_pred cCChhhHHHHHHHHHHHcCCCccHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 005000 462 TGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL--LGRAGHLNEALEVIK 509 (720)
Q Consensus 462 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~--~~~~g~~~eA~~~~~ 509 (720)
.|++++|.+.|+++.+...- +...+..+..+ +.+.|++++|++.++
T Consensus 87 ~g~~~eA~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKPH--DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHSTT--CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777777777776533211 22233333333 666666666666666
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.05 E-value=6.9e-06 Score=71.93 Aligned_cols=72 Identities=13% Similarity=0.059 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 005000 487 HYGCMVDLLGRAGHLNEALEVIKNM--------PMKPN-SIVW----GALLGACRVHRDAEMAEMAAKQILELDPDNEAV 553 (720)
Q Consensus 487 ~~~~li~~~~~~g~~~eA~~~~~~~--------~~~p~-~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 553 (720)
.|..+..++.+.|++++|+..+++. ++.|+ ...| .....++...|++++|+..|+++++++|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5556666666666666666665554 33785 5688 999999999999999999999999999998776
Q ss_pred HHHHH
Q 005000 554 YVLLC 558 (720)
Q Consensus 554 ~~~l~ 558 (720)
+.-+.
T Consensus 139 ~~~~~ 143 (159)
T 2hr2_A 139 TPGKE 143 (159)
T ss_dssp CTTHH
T ss_pred HHHHH
Confidence 54443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.05 E-value=2.9e-05 Score=68.90 Aligned_cols=93 Identities=17% Similarity=0.099 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------Ccc
Q 005000 487 HYGCMVDLLGRAGHLNEALEVIKNM----PMKPN----SIVWGALLGACRVHRDAEMAEMAAKQILELDPD------NEA 552 (720)
Q Consensus 487 ~~~~li~~~~~~g~~~eA~~~~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~ 552 (720)
.+..+...|...|++++|.+.+++. +..++ ...+..+...+...|++++|...+++++++.+. ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444555555555555555555543 00011 345566667777778888888877777765321 235
Q ss_pred hHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 553 VYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 553 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
.+..++.+|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 677888888888999988888877654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00087 Score=66.90 Aligned_cols=211 Identities=13% Similarity=0.041 Sum_probs=150.3
Q ss_pred HHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCC----------HHHHHHHHHhcc---CCCHHHHHHHHHHHHHcCC--
Q 005000 365 ELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGD----------VEKAQRVFREML---RKDKFTWTAMIVGLAINGH-- 429 (720)
Q Consensus 365 ~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~----------~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~-- 429 (720)
+.|......++..+ +.+..+|+.--......|. ++++..+++.+. .++..+|+.-.-.+...|+
T Consensus 47 ~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 47 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCccc
Confidence 45667777776654 3344455543333333332 678888888875 3477889888777778784
Q ss_pred hHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC-hhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc----------
Q 005000 430 GDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGM-VDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRA---------- 498 (720)
Q Consensus 430 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---------- 498 (720)
+++++++++++.+.. +-|...|+.-...+...|. ++++++.+..+.+. -.-|...|+....++.+.
T Consensus 126 ~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~ 202 (331)
T 3dss_A 126 WARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQG 202 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCCC------
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhcccccccc
Confidence 799999999999864 2366777777777788888 58999999998743 244677787777776665
Q ss_pred ----CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhcCCCCcchHHHHHhHh
Q 005000 499 ----GHLNEALEVIKNM-PMKP-NSIVWGALLGACRVH-----------RDAEMAEMAAKQILELDPDNEAVYVLLCNIY 561 (720)
Q Consensus 499 ----g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 561 (720)
+.++++++.+++. ...| |...|+-+-+.+... +.++++++.++++++++|++.-.+..++.+.
T Consensus 203 ~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~ 282 (331)
T 3dss_A 203 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM 282 (331)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHH
Confidence 5688999998887 4455 788898776666555 4688999999999999999865554444332
Q ss_pred ---hhcCChhHHHHHHHHHHh
Q 005000 562 ---AACNRWDNFRELRQMILD 579 (720)
Q Consensus 562 ---~~~g~~~~a~~~~~~m~~ 579 (720)
...|..++....+.++++
T Consensus 283 ~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 283 RALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHCTTTTHHHHHHHHHHHHH
T ss_pred HhhcccccHHHHHHHHHHHHH
Confidence 245777788888888765
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.04 E-value=2.4e-05 Score=66.17 Aligned_cols=98 Identities=13% Similarity=0.066 Sum_probs=72.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 005000 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRV 529 (720)
Q Consensus 452 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~ 529 (720)
+..+...+...|++++|...|+...+.. +.+...|..+..++.+.|++++|+..+++. ...| +...|..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3445566778888888888888876321 235677778888888888888888888876 4555 57788888889999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCc
Q 005000 530 HRDAEMAEMAAKQILELDPDNE 551 (720)
Q Consensus 530 ~g~~~~a~~~~~~~~~~~p~~~ 551 (720)
.|++++|...++++++++|++.
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 9999999999999999998764
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.03 E-value=1.7e-05 Score=67.54 Aligned_cols=109 Identities=7% Similarity=-0.055 Sum_probs=61.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC----CCC----HHHHHH
Q 005000 452 YVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PM----KPN----SIVWGA 522 (720)
Q Consensus 452 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~----~p~----~~~~~~ 522 (720)
+..+...+...|++++|...|+..... .+.+...+..+...|.+.|++++|...+++. .. .++ ..+|..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 333444444555555555555544321 1223444555555555555555555555544 11 122 556777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhh
Q 005000 523 LLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAA 563 (720)
Q Consensus 523 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 563 (720)
+...+...|++++|...++++++..| ++.....+..++..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 77778888888888888888888877 45555555555443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.02 E-value=9.3e-06 Score=68.23 Aligned_cols=94 Identities=14% Similarity=0.099 Sum_probs=69.5
Q ss_pred hcCChhhHHHHHHHHHHHcCC-Cc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 005000 461 HTGMVDEGREYFADMTIQHGI-EP-NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMA 536 (720)
Q Consensus 461 ~~g~~~~a~~~~~~m~~~~~~-~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 536 (720)
..|++++|+..|++.. +.+. .| +...+..+...|.+.|++++|++.+++. ...| +...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al-~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAI-ASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHH-SSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHH-HcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHH
Confidence 3577888888888775 2210 23 4567778888888999999999988887 3445 577888888999999999999
Q ss_pred HHHHHHHHhcCCCCcchHH
Q 005000 537 EMAAKQILELDPDNEAVYV 555 (720)
Q Consensus 537 ~~~~~~~~~~~p~~~~~~~ 555 (720)
...++++++..|+++....
T Consensus 81 ~~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 81 VELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHH
Confidence 9999999999998866543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.02 E-value=2.3e-05 Score=70.22 Aligned_cols=80 Identities=20% Similarity=0.079 Sum_probs=65.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-chHHHHHhH
Q 005000 484 NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE-AVYVLLCNI 560 (720)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 560 (720)
+...|..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|...++++++++|+++ .....+..+
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3467888889999999999999999887 4455 678899999999999999999999999999999987 555555544
Q ss_pred hhh
Q 005000 561 YAA 563 (720)
Q Consensus 561 ~~~ 563 (720)
..+
T Consensus 142 ~~~ 144 (162)
T 3rkv_A 142 TER 144 (162)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.01 E-value=7.2e-06 Score=83.67 Aligned_cols=147 Identities=10% Similarity=0.001 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHH
Q 005000 414 KFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVD 493 (720)
Q Consensus 414 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 493 (720)
...|..+...+.+.|++++|+..|++.+.. .|+... +...|+.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 456777778888889999999999988774 454432 222333333332221 236778888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhh-hcCChhHH
Q 005000 494 LLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYA-ACNRWDNF 570 (720)
Q Consensus 494 ~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~a 570 (720)
+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|+++.++..|..+.. ..+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887 4445 67889999999999999999999999999999999999998888854 45677888
Q ss_pred HHHHHHHHhC
Q 005000 571 RELRQMILDR 580 (720)
Q Consensus 571 ~~~~~~m~~~ 580 (720)
.+.++.|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8888877654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00033 Score=76.41 Aligned_cols=170 Identities=12% Similarity=-0.004 Sum_probs=137.8
Q ss_pred CCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC
Q 005000 397 GDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGH----------GDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTG 463 (720)
Q Consensus 397 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 463 (720)
..-++|.+.++.+.. .+..+|+.--..+...|+ ++++++.++++.+... -+..+|..-..++.+.|
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcc
Confidence 344677888888753 356678877777777776 8999999999998642 25568888888888899
Q ss_pred --ChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------
Q 005000 464 --MVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAG-HLNEALEVIKNM-PMKP-NSIVWGALLGACRVH-------- 530 (720)
Q Consensus 464 --~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~-------- 530 (720)
+++++.+.++++.+.. +-+...|+.-..++.+.| .++++++.++++ ...| |...|+.....+...
T Consensus 122 ~~~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 6699999999997432 346778888888888999 899999999998 5566 788998888877663
Q ss_pred ------CCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhH
Q 005000 531 ------RDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDN 569 (720)
Q Consensus 531 ------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 569 (720)
+.++++.+.++++++++|++..+|..+..++.+.++.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999998665
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.98 E-value=3.2e-05 Score=63.70 Aligned_cols=100 Identities=16% Similarity=0.065 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHH
Q 005000 450 VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP---NSIVWGALLG 525 (720)
Q Consensus 450 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p---~~~~~~~ll~ 525 (720)
..+..+...+...|++++|...|++..+.. +.+...+..+...|.+.|++++|.+.+++. ...| +...|..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 345556666777777777777777765321 234566777777888888888888888776 3334 4778888888
Q ss_pred HHHhc-CCHHHHHHHHHHHHhcCCCCc
Q 005000 526 ACRVH-RDAEMAEMAAKQILELDPDNE 551 (720)
Q Consensus 526 ~~~~~-g~~~~a~~~~~~~~~~~p~~~ 551 (720)
.+... |++++|...++++++..|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 88888 899999999999988888754
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.96 E-value=1.4e-05 Score=66.13 Aligned_cols=92 Identities=13% Similarity=-0.033 Sum_probs=76.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------cchHH
Q 005000 484 NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDN------EAVYV 555 (720)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 555 (720)
+...+..+...+.+.|++++|.+.+++. ...| +...|..+..++...|++++|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4566777888888999999999998886 3444 67889999999999999999999999999999998 77888
Q ss_pred HHHhHhhhcCChhHHHHHHH
Q 005000 556 LLCNIYAACNRWDNFRELRQ 575 (720)
Q Consensus 556 ~l~~~~~~~g~~~~a~~~~~ 575 (720)
.++.++...|++++|.+.++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 88888888888777765443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.95 E-value=4.4e-05 Score=78.71 Aligned_cols=112 Identities=9% Similarity=-0.012 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 005000 450 VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKP-NSIVWGALLGACR 528 (720)
Q Consensus 450 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p-~~~~~~~ll~~~~ 528 (720)
..+..+...+...|++++|++.|++..+.. |+. ......+++. ...| +..+|..+..++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~------~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGA------KLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHG------GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHH------HHHHHHHHHHHHHHHHHH
Confidence 456666667777777777777777665211 100 0001111111 1233 4678899999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 529 VHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 529 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
+.|++++|+..++++++++|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999988763
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00014 Score=61.85 Aligned_cols=104 Identities=12% Similarity=-0.012 Sum_probs=68.8
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHH
Q 005000 455 VLSACTHTGMVDEGREYFADMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN----SIVWGALLGACR 528 (720)
Q Consensus 455 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~----~~~~~~ll~~~~ 528 (720)
+...+...|++++|...|+.+.+...-.+ ....+..+...|.+.|++++|.+.+++. ...|+ ...+..+..++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 34455666777777777776653221111 0145566677777777777777777765 22332 566777888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 005000 529 VHRDAEMAEMAAKQILELDPDNEAVYVLLC 558 (720)
Q Consensus 529 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 558 (720)
..|++++|...++++++..|+++.......
T Consensus 88 ~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~ 117 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQYPGSDAARVAQE 117 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 899999999999999999888765544443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.93 E-value=6.5e-05 Score=66.53 Aligned_cols=131 Identities=12% Similarity=0.058 Sum_probs=73.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCh----HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCc----cHHH
Q 005000 417 WTAMIVGLAINGHGDKSLDMFSQMLRASII-PDE----VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP----NEAH 487 (720)
Q Consensus 417 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~ 487 (720)
+..+...+...|++++|+..+++..+.... ++. .++..+...+...|++++|...+++......-.+ ....
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 344444455555555555555554432100 111 2445555566666666666666665542211111 1345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005000 488 YGCMVDLLGRAGHLNEALEVIKNM-------PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELD 547 (720)
Q Consensus 488 ~~~li~~~~~~g~~~eA~~~~~~~-------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 547 (720)
+..+...+...|++++|.+.+++. +..+ ...++..+...+...|++++|...+++++++.
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 556666777777777777776654 1111 13456677777888888888888888887653
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00016 Score=61.63 Aligned_cols=59 Identities=7% Similarity=-0.024 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 005000 416 TWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD-EVTYVGVLSACTHTGMVDEGREYFADMT 476 (720)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 476 (720)
.|..+...+.+.|++++|++.|++.++. .|+ ...|..+..++...|++++|++.++...
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 3444455555555555555555555543 222 2344445555555555555555555443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.89 E-value=4.3e-05 Score=81.49 Aligned_cols=95 Identities=14% Similarity=0.010 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 005000 486 AHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN----------------SIVWGALLGACRVHRDAEMAEMAAKQILELDP 548 (720)
Q Consensus 486 ~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 548 (720)
..|..+...|.+.|++++|...|++. ...|+ ...|..+..++.+.|++++|+..++++++++|
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 348 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 348 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 34555666666666666666666655 22221 57889999999999999999999999999999
Q ss_pred CCcchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 549 DNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 549 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
+++.+|..++.+|...|++++|...++++.+.
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998764
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.87 E-value=3.9e-05 Score=81.69 Aligned_cols=128 Identities=7% Similarity=0.004 Sum_probs=89.9
Q ss_pred HHhcCChhhHHHHHHHHHHHcC--CCc----cHHHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHH
Q 005000 459 CTHTGMVDEGREYFADMTIQHG--IEP----NEAHYGCMVDLLGRAGHLNEALEVIKNM---------PMKPN-SIVWGA 522 (720)
Q Consensus 459 ~~~~g~~~~a~~~~~~m~~~~~--~~p----~~~~~~~li~~~~~~g~~~eA~~~~~~~---------~~~p~-~~~~~~ 522 (720)
+...|++++|..++++..+... +.| ...+++.|..+|...|++++|+.++++. +..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4456667777666665543221 111 2456777777777777777777777665 23343 457888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh-----cCCCCcc---hHHHHHhHhhhcCChhHHHHHHHHHHhCCCccCC
Q 005000 523 LLGACRVHRDAEMAEMAAKQILE-----LDPDNEA---VYVLLCNIYAACNRWDNFRELRQMILDRGIKKTP 586 (720)
Q Consensus 523 ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 586 (720)
|...|...|++++|+.+++++++ +.|+++. ....|..++..+|++++|+.++.+++++..+..|
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~ 470 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQP 470 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999986 3677654 4457888889999999999999999886544333
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.83 E-value=7.8e-05 Score=58.78 Aligned_cols=82 Identities=23% Similarity=0.255 Sum_probs=67.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHh
Q 005000 484 NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIY 561 (720)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 561 (720)
+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++++|+++..+..++.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3456677778888888888888888776 3334 6778888889999999999999999999999999999999998888
Q ss_pred hhcC
Q 005000 562 AACN 565 (720)
Q Consensus 562 ~~~g 565 (720)
.+.|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 7654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.83 E-value=3.8e-05 Score=64.12 Aligned_cols=78 Identities=15% Similarity=0.119 Sum_probs=64.5
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 503 EALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 503 eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
+|++.+++. ...| +...|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|...+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555554 3445 67788888889999999999999999999999999999999999999999999999998887653
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.83 E-value=4.9e-05 Score=77.46 Aligned_cols=152 Identities=9% Similarity=-0.015 Sum_probs=82.5
Q ss_pred hhHhhHHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 005000 383 IFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHT 462 (720)
Q Consensus 383 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 462 (720)
...+..+...|.+.|++++|...|++....+.... .+...|+.+++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 44577888999999999999999998753222111 1222333344433221 13677788889999
Q ss_pred CChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH-HHhcCCHHHHHHH
Q 005000 463 GMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN-SIVWGALLGA-CRVHRDAEMAEMA 539 (720)
Q Consensus 463 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~-~~~~g~~~~a~~~ 539 (720)
|++++|+..++...+.. +.+...|..+..+|...|++++|.+.|++. .+.|+ ...+..+... ....+..+.+...
T Consensus 244 g~~~~A~~~~~~al~~~--p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEE--EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887321 336788899999999999999999999998 56664 4555555555 3455677888999
Q ss_pred HHHHHhcCCCCc
Q 005000 540 AKQILELDPDNE 551 (720)
Q Consensus 540 ~~~~~~~~p~~~ 551 (720)
++++++..|+++
T Consensus 322 ~~~~l~~~p~~~ 333 (338)
T 2if4_A 322 YKGIFKGKDEGG 333 (338)
T ss_dssp ------------
T ss_pred HHHhhCCCCCCC
Confidence 999999998764
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00021 Score=75.50 Aligned_cols=157 Identities=10% Similarity=0.004 Sum_probs=116.5
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCC----------------hHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccH-
Q 005000 423 GLAINGHGDKSLDMFSQMLRASIIPD----------------EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNE- 485 (720)
Q Consensus 423 ~~~~~g~~~~A~~l~~~m~~~g~~p~----------------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~- 485 (720)
.+.+.|++++|++.|.++.+...... ...+..+...|...|++++|.+++..+....+-.++.
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 45667888888888888777432211 1246778899999999999999999876544333333
Q ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------C
Q 005000 486 ---AHYGCMVDLLGRAGHLNEALEVIKNM-------PMKPN-SIVWGALLGACRVHRDAEMAEMAAKQILELD------P 548 (720)
Q Consensus 486 ---~~~~~li~~~~~~g~~~eA~~~~~~~-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p 548 (720)
.+.+.+...+...|++++|.++++.. ...+. ..++..+...+...|++++|...+++++... |
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 23344455556788999999988765 22333 4577889999999999999999999987641 2
Q ss_pred CCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 549 DNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 549 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
.....+..++.+|...|+|++|...+++...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 2346888999999999999999999988754
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.82 E-value=6.8e-05 Score=60.77 Aligned_cols=65 Identities=22% Similarity=0.229 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 516 NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 516 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
+...|..+...+...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 67889999999999999999999999999999999999999999999999999999999988653
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.81 E-value=1.1e-05 Score=70.43 Aligned_cols=86 Identities=15% Similarity=0.130 Sum_probs=66.4
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCcchHHHHHhHhhh
Q 005000 496 GRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRD----------AEMAEMAAKQILELDPDNEAVYVLLCNIYAA 563 (720)
Q Consensus 496 ~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 563 (720)
.|.+++++|.+.+++. ...| +...|..+..++...++ +++|+..++++++++|++..+|..++++|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3455666666666665 3344 56666666666665554 5699999999999999999999999999998
Q ss_pred cC-----------ChhHHHHHHHHHHhCC
Q 005000 564 CN-----------RWDNFRELRQMILDRG 581 (720)
Q Consensus 564 ~g-----------~~~~a~~~~~~m~~~~ 581 (720)
.| ++++|.+.+++..+..
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 75 8999999999988743
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00015 Score=77.18 Aligned_cols=115 Identities=11% Similarity=0.015 Sum_probs=89.9
Q ss_pred HHHhcCCHHHHHHHHHhC------CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCc---chHH
Q 005000 494 LLGRAGHLNEALEVIKNM------PMK---PN-SIVWGALLGACRVHRDAEMAEMAAKQILEL-----DPDNE---AVYV 555 (720)
Q Consensus 494 ~~~~~g~~~eA~~~~~~~------~~~---p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~~ 555 (720)
.+...|++++|+.++++. .+. |+ ..+++.|..+|...|++++|+.++++++++ .|+++ ..+.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 466889999999998775 122 33 457899999999999999999999999874 45554 5678
Q ss_pred HHHhHhhhcCChhHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHHh
Q 005000 556 LLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKF 626 (720)
Q Consensus 556 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 626 (720)
.|+.+|..+|++++|..++++..+...+ . -...||...++..++.+...++..
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~-~-----------------lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLV-T-----------------HGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH-H-----------------TCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH-H-----------------hCCCChHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999988653211 1 113799999999888887766553
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00032 Score=57.55 Aligned_cols=66 Identities=11% Similarity=-0.073 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 515 PNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 515 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
++...|..+...+...|++++|...++++++++|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 356778889999999999999999999999999999999999999999999999999999998764
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00029 Score=73.79 Aligned_cols=116 Identities=12% Similarity=0.115 Sum_probs=85.6
Q ss_pred HHHHHhcCCHHHHHHHHHhC------CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCC---cch
Q 005000 492 VDLLGRAGHLNEALEVIKNM------PMKPN----SIVWGALLGACRVHRDAEMAEMAAKQILEL-----DPDN---EAV 553 (720)
Q Consensus 492 i~~~~~~g~~~eA~~~~~~~------~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~---~~~ 553 (720)
+.-+.+.|++++|++++++. -+.|+ ..+++.|..+|...|++++|+..+++++++ .|++ ...
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34455677777777777654 12232 346788888899999999999999988863 4544 356
Q ss_pred HHHHHhHhhhcCChhHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHH
Q 005000 554 YVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLK 625 (720)
Q Consensus 554 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 625 (720)
+..|+.+|..+|++++|..++++..+.-. +. -...||...+++..|.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~-~~-----------------lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR-VT-----------------HGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HH-----------------TCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH-Hh-----------------cCCCChHHHHHHHHHHHHHHHHh
Confidence 78899999999999999999998865321 11 12379999999999988877765
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0006 Score=54.05 Aligned_cols=68 Identities=19% Similarity=0.176 Sum_probs=59.8
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCCC
Q 005000 515 PNSIVWGALLGACRVHRD---AEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGI 582 (720)
Q Consensus 515 p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 582 (720)
+++..|..+..++...++ .++|...++++++++|+++.+...++.++.+.|++++|...++++.+...
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 477888888888765554 79999999999999999999999999999999999999999999987653
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0028 Score=69.03 Aligned_cols=148 Identities=14% Similarity=0.059 Sum_probs=121.5
Q ss_pred CChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHhcCC----------hhhHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 005000 428 GHGDKSLDMFSQMLRASIIPDE-VTYVGVLSACTHTGM----------VDEGREYFADMTIQHGIEPNEAHYGCMVDLLG 496 (720)
Q Consensus 428 g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~----------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 496 (720)
...++|++.+++++.. .|+. ..|+.--.++...|+ ++++.+.++.+.+.. +-+...|+.-..++.
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 3457889999999985 5655 456666666666666 899999999997432 346778888888899
Q ss_pred hcC--CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhc-------
Q 005000 497 RAG--HLNEALEVIKNM-PMKP-NSIVWGALLGACRVHR-DAEMAEMAAKQILELDPDNEAVYVLLCNIYAAC------- 564 (720)
Q Consensus 497 ~~g--~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 564 (720)
+.| ++++++++++++ ...| +..+|+.-.......| .++++.+.++++++.+|.|..+|...+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 999 779999999998 4455 7899999999999999 899999999999999999999999999998874
Q ss_pred -------CChhHHHHHHHHHHh
Q 005000 565 -------NRWDNFRELRQMILD 579 (720)
Q Consensus 565 -------g~~~~a~~~~~~m~~ 579 (720)
++++++.+.++.+..
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHh
Confidence 567888888877765
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0012 Score=56.99 Aligned_cols=115 Identities=9% Similarity=-0.023 Sum_probs=56.2
Q ss_pred CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 005000 428 GHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEV 507 (720)
Q Consensus 428 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~ 507 (720)
++.++|++.|++..+.| .|+.. +...+...+.+++|.++|++..+ . -++..+..|..+|.+-.
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~-~---g~~~a~~~Lg~~y~~G~-------- 71 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACE-L---NSGNGCRFLGDFYENGK-------- 71 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHCS--------
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHc-C---CCHHHHHHHHHHHHcCC--------
Confidence 34566666666666655 23322 44444455555556666655542 1 23344444444444400
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhh----cCChhHHHHHHHHHHhCC
Q 005000 508 IKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAA----CNRWDNFRELRQMILDRG 581 (720)
Q Consensus 508 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 581 (720)
...+++++|...++++.+. .++.++..|+.+|.. .+++++|.+.+++..+.|
T Consensus 72 --------------------g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 72 --------------------YVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp --------------------SSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred --------------------CCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 0044555555555555444 234455555555555 555555555555555443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0002 Score=62.52 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=38.8
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhcCCCCc
Q 005000 501 LNEALEVIKNM-PMKP-NSIVWGALLGACRVH-----------RDAEMAEMAAKQILELDPDNE 551 (720)
Q Consensus 501 ~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~ 551 (720)
+++|+..|++. .+.| +..+|..+..+|... |++++|+..|+++++++|++.
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 45667766665 4555 456777777777665 589999999999999999975
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00058 Score=56.68 Aligned_cols=80 Identities=16% Similarity=0.094 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005000 467 EGREYFADMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQI 543 (720)
Q Consensus 467 ~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 543 (720)
++...|++.. ...| +...+..+...|.+.|++++|++.+++. ...| +...|..+..++...|++++|...++++
T Consensus 3 ~a~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAML---AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHH---TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4556666654 2233 4666777777788888888888887776 3344 5677888888888888999999888888
Q ss_pred HhcCCC
Q 005000 544 LELDPD 549 (720)
Q Consensus 544 ~~~~p~ 549 (720)
+++.|.
T Consensus 80 l~~~~~ 85 (115)
T 2kat_A 80 LAAAQS 85 (115)
T ss_dssp HHHHHH
T ss_pred HHhccc
Confidence 888775
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00083 Score=52.62 Aligned_cols=65 Identities=28% Similarity=0.290 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 516 NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 516 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
+...|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 35678888899999999999999999999999999999999999999999999999999988763
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00031 Score=73.48 Aligned_cols=103 Identities=16% Similarity=0.114 Sum_probs=70.8
Q ss_pred cCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCC---cchHHHHHh
Q 005000 498 AGHLNEALEVIKNM---------PMKPN-SIVWGALLGACRVHRDAEMAEMAAKQILEL-----DPDN---EAVYVLLCN 559 (720)
Q Consensus 498 ~g~~~eA~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~---~~~~~~l~~ 559 (720)
.|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.++++++++ .|++ ...+..|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35666666666553 12232 356788888888888888888888888863 4544 356788999
Q ss_pred HhhhcCChhHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCcCcHHHHHHHH
Q 005000 560 IYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLD 618 (720)
Q Consensus 560 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 618 (720)
+|..+|++++|..++++..+.-.+ . -...||...++...|+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~-~-----------------lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEV-A-----------------HGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-H-----------------TCTTCHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHH-H-----------------cCCCChHHHHHHHHHh
Confidence 999999999999999888653211 1 1136888877776554
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0054 Score=52.77 Aligned_cols=108 Identities=7% Similarity=0.001 Sum_probs=78.8
Q ss_pred hcCCHHHHHHHHHhccCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh----cCChhhHH
Q 005000 395 KCGDVEKAQRVFREMLRK-DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTH----TGMVDEGR 469 (720)
Q Consensus 395 ~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~ 469 (720)
-.+++++|.+.|++..+. +.... +...|...+..++|++.|++..+.| +......+...|.. .+++++|.
T Consensus 7 ~~~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 7 VKKDLKKAIQYYVKACELNEMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CccCHHHHHHHHHHHHcCCCHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 346789999999988544 44445 7777777788899999999999875 56677777777877 78899999
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHhC
Q 005000 470 EYFADMTIQHGIEPNEAHYGCMVDLLGR----AGHLNEALEVIKNM 511 (720)
Q Consensus 470 ~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~eA~~~~~~~ 511 (720)
++|++.. +. -++..+..|..+|.. .+++++|.+.+++.
T Consensus 82 ~~~~~Aa-~~---g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 123 (138)
T 1klx_A 82 QYYSKAC-GL---NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA 123 (138)
T ss_dssp HHHHHHH-HT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHH-cC---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 9998876 33 345556666666666 56666666666554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0028 Score=54.61 Aligned_cols=90 Identities=9% Similarity=0.013 Sum_probs=70.0
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC-C-CCcchHHHHHhHhhhcCChhHHHHHHHHHHhCCCccCCccc
Q 005000 515 PNSIVWGALLGACRVHR---DAEMAEMAAKQILELD-P-DNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCS 589 (720)
Q Consensus 515 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s 589 (720)
++..+.-.+..++.+.+ +.++|+.+++.+++.+ | ++...++.|+-.|.+.|++++|.+.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~---------- 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ---------- 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH----------
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh----------
Confidence 57777778888888877 5668888888888887 6 4567888888888899999999988888876
Q ss_pred EEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHHhcCcc
Q 005000 590 MIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYM 630 (720)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~ 630 (720)
..|...++..+.+.+...+++.|.+
T Consensus 100 ----------------ieP~n~QA~~Lk~~ie~~~~kdgl~ 124 (152)
T 1pc2_A 100 ----------------TEPQNNQAKELERLIDKAMKKDGLV 124 (152)
T ss_dssp ----------------HCTTCHHHHHHHHHHHHHHHHTTCC
T ss_pred ----------------cCCCCHHHHHHHHHHHHHHHHhhHH
Confidence 2456677777777777778887764
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0084 Score=60.04 Aligned_cols=63 Identities=16% Similarity=0.125 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 516 NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 516 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
++.+|..+...+...|++++|...++++++++|+ ...|..++.++.-.|++++|.+.+++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4444444444444445555555555555555542 34445555555555555555555544433
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0027 Score=50.71 Aligned_cols=64 Identities=22% Similarity=0.291 Sum_probs=51.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchH
Q 005000 491 MVDLLGRAGHLNEALEVIKNM-PMKP-NSI-VWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVY 554 (720)
Q Consensus 491 li~~~~~~g~~~eA~~~~~~~-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 554 (720)
....+.+.|++++|.+.+++. ...| +.. .|..+..++...|++++|...++++++++|+++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 455677788888888888876 3445 566 788888889999999999999999999999987766
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.005 Score=64.27 Aligned_cols=69 Identities=13% Similarity=0.051 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCC
Q 005000 486 AHYGCMVDLLGRAGHLNEALEVIKNM---------PMKPN-SIVWGALLGACRVHRDAEMAEMAAKQILEL-----DPDN 550 (720)
Q Consensus 486 ~~~~~li~~~~~~g~~~eA~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~ 550 (720)
.+++.|..+|...|++++|+.++++. +..|+ ..+++.|...|...|++++|+.++++++++ .|++
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~H 420 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDH 420 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 45556666666666666666666554 23344 356788888889999999999988888863 6776
Q ss_pred cchH
Q 005000 551 EAVY 554 (720)
Q Consensus 551 ~~~~ 554 (720)
+.+-
T Consensus 421 p~~~ 424 (433)
T 3qww_A 421 PYIS 424 (433)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 5443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0027 Score=50.73 Aligned_cols=59 Identities=20% Similarity=0.275 Sum_probs=54.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcc-hHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 523 LLGACRVHRDAEMAEMAAKQILELDPDNEA-VYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 523 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
....+...|++++|...++++++.+|+++. .+..++.+|...|++++|.+.+++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 456678899999999999999999999999 99999999999999999999999987643
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0073 Score=48.43 Aligned_cols=63 Identities=16% Similarity=0.194 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 005000 413 DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMT 476 (720)
Q Consensus 413 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 476 (720)
+...|..+...|...|++++|+..|++.++.. +.+...|..+..++...|++++|.+.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44556666666666666666666666666542 1123455556666666666666666666554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.011 Score=61.63 Aligned_cols=70 Identities=13% Similarity=-0.011 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCC
Q 005000 486 AHYGCMVDLLGRAGHLNEALEVIKNM---------PMKPN-SIVWGALLGACRVHRDAEMAEMAAKQILE-----LDPDN 550 (720)
Q Consensus 486 ~~~~~li~~~~~~g~~~eA~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~ 550 (720)
.+++.+..+|...|++++|+.+++++ +..|+ ..+++.|...|...|++++|+..++++++ +.|++
T Consensus 330 ~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~H 409 (429)
T 3qwp_A 330 KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREH 409 (429)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44555555555666666665555544 23343 35678888888888888888888888886 36776
Q ss_pred cchHH
Q 005000 551 EAVYV 555 (720)
Q Consensus 551 ~~~~~ 555 (720)
+.+-.
T Consensus 410 p~~~~ 414 (429)
T 3qwp_A 410 SLIED 414 (429)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 65443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.097 Score=59.90 Aligned_cols=130 Identities=16% Similarity=0.181 Sum_probs=76.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCccchHHHHHHHHhcCChhHHHH
Q 005000 255 NALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALT 334 (720)
Q Consensus 255 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 334 (720)
..++..+.+.|..++|.++.+. . ..-.......|++++|.++.+.+. +...|..+...+.+.|+++.|.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~-----~---~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~ 702 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD-----Q---DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIE 702 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC-----H---HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCC-----c---chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHH
Confidence 5555666666666666655431 1 111233456677777777766553 44678888888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhc
Q 005000 335 LFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREM 409 (720)
Q Consensus 335 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 409 (720)
.|.++.. |..+...+...++.+....+-..+...|. ++.-...|.+.|++++|.+++.++
T Consensus 703 ~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 703 AFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 8877642 22333334445555555555444444331 334445566677777777765544
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.50 E-value=6.7e-05 Score=76.25 Aligned_cols=447 Identities=11% Similarity=0.096 Sum_probs=236.6
Q ss_pred CChHHHHHHhccCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHH
Q 005000 63 GDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFTRDIAVEFGKELHCHVL 142 (720)
Q Consensus 63 g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 142 (720)
++++.|...-++...|.+ |..|..+....++..+|++.|-+. -|+..|..++.++.+.|.++.-...+..+.
T Consensus 39 ~~ldRa~eyA~~~n~p~V--Ws~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaR 110 (624)
T 3lvg_A 39 GNLDRAYEFAERCNEPAV--WSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMAR 110 (624)
T ss_dssp CCSTTTTTSSSSCCCCCC--SSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTS
T ss_pred cccHHHHHHHHHhCCccH--HHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 344555544444444544 777888888888888777655321 366678888888888888888777776665
Q ss_pred HhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHC------------
Q 005000 143 KFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERK------------ 210 (720)
Q Consensus 143 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------------ 210 (720)
+. ..++.+-+.|+-+|++.+++.+-++.+. .||+.--..+..-+...|.++.|.-+|..+...
T Consensus 111 k~--~ke~~IDteLi~ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~ 185 (624)
T 3lvg_A 111 KK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGE 185 (624)
T ss_dssp TT--CCSTTTTHHHHHHHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSG
T ss_pred HH--hcccccHHHHHHHHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 54 3456667788888888887766433332 234444444444444445444444444332110
Q ss_pred --------CCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCC---
Q 005000 211 --------GVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKN--- 279 (720)
Q Consensus 211 --------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--- 279 (720)
.-.-+..||..+-.+|...+.+..|...--.++-..-. ...++..|-+.|.+++-+.+++.-..
T Consensus 186 yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhade-----L~elv~~YE~~G~f~ELIsLlEaglglEr 260 (624)
T 3lvg_A 186 YQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE-----LEELINYYQDRGYFEELITMLEAALGLER 260 (624)
T ss_dssp GGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSC-----CSGGGSSSSTTCCCTTSTTTHHHHTTSTT
T ss_pred HHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHH-----HHHHHHHHHhCCCHHHHHHHHHHHhCCCc
Confidence 01235668888888888888877665543333332111 12356667778888777777776442
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC----C-------CccchHHHHHHHHhcCChhHHHHHHHHHHHC------
Q 005000 280 KDVISWTAIVTGYINRGQVDMARQYFDQMPE----R-------DYVLWTAMIDGYLRVNRFREALTLFREMQTS------ 342 (720)
Q Consensus 280 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~----~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------ 342 (720)
.....++-|.-.|+|- +.++-.+.++..-. | ....|.-++-.|.+-.+++.|... |.+.
T Consensus 261 AHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h~~~Aw~ 336 (624)
T 3lvg_A 261 AHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNHPTDAWK 336 (624)
T ss_dssp CCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSCHHHHCC
T ss_pred hhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhCChhhcc
Confidence 3555666666666654 23333333332211 1 445788888888888888877543 2211
Q ss_pred -----C---CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCCCH
Q 005000 343 -----N---IRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDK 414 (720)
Q Consensus 343 -----g---~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~ 414 (720)
. -.+|...|-..+.-|....- ..-..++.-+ ...+.+ +..+.++.|.|++.-....+..+...|.
T Consensus 337 h~~Fkdii~KVaN~EiyYKAi~FYL~e~P-~lL~DLL~vL-~prlDh-----~RvV~~~~k~~~LpLIkpYL~~Vq~~N~ 409 (624)
T 3lvg_A 337 EGQFKDIITKVANVELYYRAIQFYLEFKP-LLLNDLLMVL-SPRLDH-----TRAVNYFSKVKQLPLVKPYLRSVQNHNN 409 (624)
T ss_dssp GGGGTTTGGGCSCSHHHHHHHHHHTTSCC-TTSHHHHHHH-CTTCCS-----TTTHHHHHTTTCGGGGTGGGTSCCCSCC
T ss_pred HHHHHHHHHHcchHHHHHHHHHHHHHhCh-HHHHHHHHhc-cccCCh-----HHHHHHHHhcCCchhhHHHHHHHHHhhH
Confidence 0 01233333333333332110 0000000000 000111 1233444444444444444444444444
Q ss_pred HHHH-HHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHH
Q 005000 415 FTWT-AMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVD 493 (720)
Q Consensus 415 ~~~~-~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 493 (720)
..-| ++-..|....+++ +...-+.+|-.-..+.-|.++ +++ +-.+.-..-..
T Consensus 410 ~aVNeAln~L~IEEEDy~-------------------~LR~SId~ydNFD~i~LA~rL-----EkH---eL~eFRrIAA~ 462 (624)
T 3lvg_A 410 KSVNESLNNLFITEEDYQ-------------------ALRTSIDAYDNFDNISLAQRL-----EKH---ELIEFRRIAAY 462 (624)
T ss_dssp HHHHHHHHHHHHHTTCCH-------------------HHHHTTSSCCCSCTTHHHHHH-----HTC---SSHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhHH-------------------HHHHHHHHhccccHHHHHHHH-----hhC---chHHHHHHHHH
Confidence 3333 3444455555443 222222222222223323222 121 22233334456
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHH
Q 005000 494 LLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFREL 573 (720)
Q Consensus 494 ~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 573 (720)
.|.+.++|+++.++.++=.+-.| .+......|+.+.++++++-.++.+- ...+....-.|...=+.+-+.++
T Consensus 463 LYkkn~rw~qsi~l~KkDklykD------AietAa~S~~~elaeeLL~yFv~~g~--~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 463 LFKGNNRWKQSVELCKKDSLYKD------AMQYASESKDTELAEELLQWFLQEEK--RECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp HHHTTCHHHHHSSCSSTTCCTTG------GGTTTTTCCCTTHHHHHHHHHHHHCS--THHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHhcccHHHHHHHHHhcccHHH------HHHHHHHcCCHHHHHHHHHHHHHcCc--hHHHHHHHHHHhhccChHHHHHH
Confidence 78889999999887765432222 23445567777777777777766543 34666666666666666666664
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.46 E-value=0.044 Score=45.19 Aligned_cols=139 Identities=12% Similarity=0.084 Sum_probs=92.6
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHH
Q 005000 426 INGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEAL 505 (720)
Q Consensus 426 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~ 505 (720)
-.|..++..++..+..... +..-++-++--....-+-+-..+.++.+-+-+ | ...+|++....
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiF----D----------is~C~NlKrVi 81 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYF----D----------LDKCQNLKSVV 81 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS----C----------GGGCSCTHHHH
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhc----C----------cHhhhcHHHHH
Confidence 3566666666666655421 33334444433333334444444444332111 1 23467777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCCCc
Q 005000 506 EVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIK 583 (720)
Q Consensus 506 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 583 (720)
..+-.+.. +.....-.+......|+.++-..++..++..+|.++.....++++|.+.|+..+|.++++++-++|++
T Consensus 82 ~C~~~~n~--~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 82 ECGVINNT--LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHTTC--CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc--hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 77666642 44555667788899999999999999987778888999999999999999999999999999999985
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.012 Score=56.53 Aligned_cols=87 Identities=15% Similarity=0.182 Sum_probs=71.1
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCC-cchHHHHHhHhhhc-CChhH
Q 005000 501 LNEALEVIKNM-PMKPN---SIVWGALLGACRV-----HRDAEMAEMAAKQILELDPDN-EAVYVLLCNIYAAC-NRWDN 569 (720)
Q Consensus 501 ~~eA~~~~~~~-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 569 (720)
..+|...+++. .+.|+ ...|..|...|.. -|+.++|++.|++++++.|+. ..+++.++..++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45566666665 56676 5678888888888 499999999999999999974 99999999999884 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 005000 570 FRELRQMILDRGIKKTPG 587 (720)
Q Consensus 570 a~~~~~~m~~~~~~~~~~ 587 (720)
+.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998877664454
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.036 Score=55.50 Aligned_cols=144 Identities=8% Similarity=0.042 Sum_probs=99.2
Q ss_pred CCCHHHHHHHHHHHH--HcCC---hHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHh---cC-Ch-hhHH---HHHHHHH
Q 005000 411 RKDKFTWTAMIVGLA--INGH---GDKSLDMFSQMLRASIIPDE-VTYVGVLSACTH---TG-MV-DEGR---EYFADMT 476 (720)
Q Consensus 411 ~~~~~~~~~li~~~~--~~g~---~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~---~g-~~-~~a~---~~~~~m~ 476 (720)
..+...|...+.+.. ..+. ..+|+.+|++.++. .|+. ..+..+..++.. .+ .. .... +.+....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 447788888886654 3343 47899999999984 6775 445544444431 11 11 1111 1122111
Q ss_pred HHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 005000 477 IQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYV 555 (720)
Q Consensus 477 ~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 555 (720)
.....+.++..|..+...+...|++++|...++++ ...|+...|..+...+.-.|+.++|.+.+++++.++|..+ +|.
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~-t~~ 347 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN-TLY 347 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH-HHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC-hHH
Confidence 01122456788888887788889999999999998 4668888888888889999999999999999999999864 444
Q ss_pred HH
Q 005000 556 LL 557 (720)
Q Consensus 556 ~l 557 (720)
..
T Consensus 348 ~~ 349 (372)
T 3ly7_A 348 WI 349 (372)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.03 Score=44.08 Aligned_cols=69 Identities=10% Similarity=0.052 Sum_probs=54.8
Q ss_pred CccHHHHHHHHHHHHhcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 005000 482 EPNEAHYGCMVDLLGRAGH---LNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDN 550 (720)
Q Consensus 482 ~p~~~~~~~li~~~~~~g~---~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 550 (720)
++++..+..+..++...++ .++|..++++. ...| ++..+..+...+...|++++|+..++++++.+|++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3566777777777765554 68888888887 4566 56777778888999999999999999999999984
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.00 E-value=0.038 Score=44.52 Aligned_cols=73 Identities=16% Similarity=0.060 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 005000 486 AHYGCMVDLLGRAGHLNEALEVIKNM-----P----MKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVL 556 (720)
Q Consensus 486 ~~~~~li~~~~~~g~~~eA~~~~~~~-----~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 556 (720)
.-+..|...+.+.|+++.|...++.. + -.+....+..|..++.+.|+++.|...++++++++|+++.+...
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 33445555566666666666655554 0 11346678889999999999999999999999999998776555
Q ss_pred HH
Q 005000 557 LC 558 (720)
Q Consensus 557 l~ 558 (720)
+.
T Consensus 86 ~~ 87 (104)
T 2v5f_A 86 LK 87 (104)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.98 E-value=0.14 Score=58.48 Aligned_cols=46 Identities=13% Similarity=0.206 Sum_probs=24.2
Q ss_pred hhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005000 393 YCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQM 440 (720)
Q Consensus 393 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 440 (720)
..++|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++
T Consensus 662 ~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 33455555555554443 23445555555555555555555555554
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.74 E-value=0.041 Score=45.51 Aligned_cols=65 Identities=6% Similarity=-0.066 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcC-C-CCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 515 PNSIVWGALLGACRVHRDAEM---AEMAAKQILELD-P-DNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 515 p~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
|+..+--.+.+++.+.++... ++.+++.+++.+ | ......+.|+-.+.+.|+|++|.+..+.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444444444444443333 455555554443 3 2333444555555555555555555555443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0022 Score=65.42 Aligned_cols=238 Identities=11% Similarity=0.019 Sum_probs=171.5
Q ss_pred ChhHhhHHhcccccccCChHHHHHHhccCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHHh
Q 005000 47 NPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGFT 126 (720)
Q Consensus 47 ~~~~~~~ll~~~y~~~g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 126 (720)
.+.+|+.|-.+ +...|++.+|...|= ...|...|..+|.+..+.|.+++-+..+.-.++. .-++..=+.++-+|+
T Consensus 53 ~p~VWs~LgkA-qL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayA 127 (624)
T 3lvg_A 53 EPAVWSQLAKA-QLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALA 127 (624)
T ss_dssp CCCCSSSHHHH-TTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHH
T ss_pred CccHHHHHHHH-HHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHH
Confidence 46678888888 778888888887763 3456677889999999999999988877655543 234555578899999
Q ss_pred ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC------------------------CCCee
Q 005000 127 RDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSY------------------------KDDVV 182 (720)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~------------------------~~~~~ 182 (720)
+.+++.+-.++.. .|+..-...+.+-+...|.++.|.-+|..+. ..++.
T Consensus 128 k~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 128 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp TSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred hhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 9888765433321 3666667778888888899998888886543 14778
Q ss_pred eHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHH
Q 005000 183 TWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYA 262 (720)
Q Consensus 183 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 262 (720)
+|-.+-.+|...+.+.-|.-.--.+.- .| .-+..++..|-..|.+++-..+++.-+... ......++.|.-.|+
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniIv---ha--deL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYs 274 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIVV---HA--DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 274 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHHC---CS--SCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhcc---cH--HHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHH
Confidence 999999999999999887655544432 22 223446667888899998888887665321 346778888998998
Q ss_pred hcCCHHHHHHHHhhcCC-----------CCchhHHHHHHHHHhcCCHHHHHH
Q 005000 263 ACGEMGFALEIFGNIKN-----------KDVISWTAIVTGYINRGQVDMARQ 303 (720)
Q Consensus 263 ~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~ 303 (720)
|- +.++-.+.++..-. .....|.-++-.|.+-..++.|..
T Consensus 275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 86 44555544443322 245679999999999999998754
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.56 E-value=0.049 Score=46.84 Aligned_cols=73 Identities=12% Similarity=0.049 Sum_probs=47.1
Q ss_pred ccHHHHHHHHHHHHhcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 005000 483 PNEAHYGCMVDLLGRAG---HLNEALEVIKNM-PMK-P--NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYV 555 (720)
Q Consensus 483 p~~~~~~~li~~~~~~g---~~~eA~~~~~~~-~~~-p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 555 (720)
++..+.-.+..++.+.+ +.+++..++++. ... | ....+..|.-+|.+.|++++|.+.++++++.+|++..+..
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 34444444444555544 333555555444 112 3 2445667777889999999999999999999999865543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.6 Score=41.14 Aligned_cols=130 Identities=14% Similarity=0.160 Sum_probs=86.1
Q ss_pred hhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHH
Q 005000 390 IDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGR 469 (720)
Q Consensus 390 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 469 (720)
.+...++|+++.|.++.+++ .+...|..+......+|+.+-|.+.|++... |..+.-.|...|+.+.-.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 34556788999998888776 5677899999999999999999988887543 333444566677776655
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005000 470 EYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQI 543 (720)
Q Consensus 470 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 543 (720)
++-+... ..| -++.-...+.-.|+++++.+++.+.+.-|... -..+.+|..+.|.++.+.+
T Consensus 81 kla~iA~-~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 81 KMQNIAQ-TRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHH-HTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHH-HCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 5544332 222 13444555667888888888888875433221 2234467777777776554
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.11 E-value=0.56 Score=39.42 Aligned_cols=91 Identities=4% Similarity=-0.059 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCC-CcchHHHHHhHhhhcCChhHHHHHHHHHHhCCCccCCccc
Q 005000 514 KPNSIVWGALLGACRVHRD---AEMAEMAAKQILELDPD-NEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCS 589 (720)
Q Consensus 514 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s 589 (720)
.|+..+--.+.+++.+..+ ..+++.+++.++...|. .....+.|+-.+.+.|++++|++..+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--------- 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--------- 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT---------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---------
Confidence 3555555555566655553 34677777777776664 3455666777777777777777777776652
Q ss_pred EEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHHhcCcc
Q 005000 590 MIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYM 630 (720)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~ 630 (720)
.|.+.++..+-..+..+|.+.|.+
T Consensus 107 -----------------eP~n~QA~~Lk~~Ie~~i~kdGli 130 (144)
T 1y8m_A 107 -----------------ERNNKQVGALKSMVEDKIQKETLK 130 (144)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHHHTTTT
T ss_pred -----------------CCCcHHHHHHHHHHHHHHHHhchh
Confidence 355566666666666677777654
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.00 E-value=2.3 Score=37.39 Aligned_cols=47 Identities=19% Similarity=0.473 Sum_probs=23.3
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhh
Q 005000 259 DMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQ 307 (720)
Q Consensus 259 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 307 (720)
+....+|+++.|.++.+.+ .+...|..+.....+.|+++-|++.|..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 3445566666666665544 2333444444444444444444444433
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=93.92 E-value=0.19 Score=40.26 Aligned_cols=64 Identities=17% Similarity=0.000 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 516 NSIVWGALLGACRVHRDAEMAEMAAKQILELD-------PDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 516 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
+..-...+...+...|+++.|...++++++.. +..+.++..|+.+|.+.|++++|...++++.+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 45566788899999999999999999999753 23456889999999999999999999998875
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.28 E-value=0.66 Score=38.25 Aligned_cols=74 Identities=14% Similarity=0.042 Sum_probs=48.9
Q ss_pred ccHHHHHHHHHHHHhcCCHHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 005000 483 PNEAHYGCMVDLLGRAGHLNE---ALEVIKNM-PMK-P--NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYV 555 (720)
Q Consensus 483 p~~~~~~~li~~~~~~g~~~e---A~~~~~~~-~~~-p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 555 (720)
|+..+--.+..++.+..+..+ ++.+++.. ... | .......|.-++.+.|+++.|.+.++.+++.+|+|..+..
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 445555555556666665544 56666654 212 3 2234456667899999999999999999999999866544
Q ss_pred H
Q 005000 556 L 556 (720)
Q Consensus 556 ~ 556 (720)
+
T Consensus 113 L 113 (126)
T 1nzn_A 113 L 113 (126)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.99 E-value=0.29 Score=54.22 Aligned_cols=55 Identities=13% Similarity=-0.034 Sum_probs=51.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHH
Q 005000 524 LGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMIL 578 (720)
Q Consensus 524 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 578 (720)
...|...|+++.|..+++++...-|.+..++..|+.+|...|+|+.|.-.+..+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3557889999999999999999999999999999999999999999999998874
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=92.87 E-value=0.47 Score=39.31 Aligned_cols=65 Identities=5% Similarity=-0.072 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCC-CcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 515 PNSIVWGALLGACRVHRD---AEMAEMAAKQILELDPD-NEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 515 p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
|+..+--.+.+++.+..+ ..+|+.+++.+++.+|. ....++.|+-.+.+.|++++|++..+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 344444444444444433 33556666666655553 244555666666666666666666665543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=92.64 E-value=0.26 Score=47.28 Aligned_cols=81 Identities=12% Similarity=0.161 Sum_probs=53.1
Q ss_pred hhHHHHHHHHHHHcCCCcc---HHHHHHHHHHHHhc-----CCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHh-cCCH
Q 005000 466 DEGREYFADMTIQHGIEPN---EAHYGCMVDLLGRA-----GHLNEALEVIKNM-PMKPN--SIVWGALLGACRV-HRDA 533 (720)
Q Consensus 466 ~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~-----g~~~eA~~~~~~~-~~~p~--~~~~~~ll~~~~~-~g~~ 533 (720)
.+|...+++.. .+.|+ ...|..+...|.+. |+.++|.+.|++. .+.|+ ..++......+.. .|+.
T Consensus 180 ~~A~a~lerAl---eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 180 HAAVMMLERAC---DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHH---HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHH---HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 34444444443 33454 45666777777773 7777777777776 45562 5666666776655 4888
Q ss_pred HHHHHHHHHHHhcCCC
Q 005000 534 EMAEMAAKQILELDPD 549 (720)
Q Consensus 534 ~~a~~~~~~~~~~~p~ 549 (720)
+++.+.+++++...|.
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 8888888888887776
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=92.08 E-value=4.5 Score=33.52 Aligned_cols=138 Identities=11% Similarity=-0.045 Sum_probs=84.2
Q ss_pred cCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCC-CCchhHHHHHHHHHhcCCHHHHHHHHh
Q 005000 228 KLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKN-KDVISWTAIVTGYINRGQVDMARQYFD 306 (720)
Q Consensus 228 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~f~ 306 (720)
-.|..+++.++.....+.. +..-+|-+|--....-+-+...++++.+.. -|. ..+|++......+-
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi----------s~C~NlKrVi~C~~ 85 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL----------DKCQNLKSVVECGV 85 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG----------GGCSCTHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc----------HhhhcHHHHHHHHH
Confidence 3567777777777766642 333344444333333444444444444332 121 23444444444443
Q ss_pred hCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCC
Q 005000 307 QMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVK 380 (720)
Q Consensus 307 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~ 380 (720)
.+. .+....+..++.+..+|+-++-.+++.++.. +.+|++.....+..||.+.|+...+.+++..+-+.|++
T Consensus 86 ~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 86 INN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred Hhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 332 2334456667788888888888888888654 34778888888888888889888888888888887753
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=91.91 E-value=10 Score=37.21 Aligned_cols=113 Identities=14% Similarity=0.071 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCChhHHHHHH----HHHHHCCCCCCHhhHHHHHHHHh
Q 005000 152 VQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLF----GEMERKGVLPTSVTIVLVLSACA 227 (720)
Q Consensus 152 ~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~p~~~t~~~ll~~~~ 227 (720)
.+.++..-|.+.+++++|.+++-.. ...+.+.|+...|-++- +-+.+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3456677788999999999886432 34567778877666655 44556788999888888887776
Q ss_pred cCCCch-----HHHHHHHHHHHcC--CCCChHHHHHHHHHHHhcCCHHHHHHHHh
Q 005000 228 KLKDLD-----VGKRAHRYVKECK--IVPNLILENALTDMYAACGEMGFALEIFG 275 (720)
Q Consensus 228 ~~~~~~-----~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 275 (720)
....-+ -..+...+-.+.| ...|+.....+...|.+.+++.+|...|=
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 555322 1222233333333 33466777777788888888888877774
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=91.77 E-value=10 Score=36.93 Aligned_cols=131 Identities=11% Similarity=0.099 Sum_probs=81.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCChhHHHHH----HHHHHHCCCCCCHhhHHHHHHHHh
Q 005000 152 VQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKL----FGEMERKGVLPTSVTIVLVLSACA 227 (720)
Q Consensus 152 ~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~~~~ 227 (720)
.+.++..-|.+.+++++|.+++... ...+.+.|+...|-++ .+-..+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4556777888999999999887442 3456677887776665 444556788899888888887766
Q ss_pred cCCCc-----hHHHHHHHHHHHcC--CCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 005000 228 KLKDL-----DVGKRAHRYVKECK--IVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYI 293 (720)
Q Consensus 228 ~~~~~-----~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 293 (720)
....- .-..+...+-.+.| ...|+.....+...|.+.|++.+|...|-.-...+...+..++.-+.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~ 176 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWL 176 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 53321 22333333333333 23467777788888888888888877765322223444444443333
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=91.71 E-value=5.3 Score=33.90 Aligned_cols=98 Identities=14% Similarity=0.267 Sum_probs=53.8
Q ss_pred cCCCHHHHHHHHHHHHHcCCh------HHHHHHHHHHHHCCCCCChH----HHHHHHHH---HHhcCChhhHHHHHHHHH
Q 005000 410 LRKDKFTWTAMIVGLAINGHG------DKSLDMFSQMLRASIIPDEV----TYVGVLSA---CTHTGMVDEGREYFADMT 476 (720)
Q Consensus 410 ~~~~~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~p~~~----t~~~ll~a---~~~~g~~~~a~~~~~~m~ 476 (720)
...|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|..+.-- +...+++++|.++|+.+.
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 345788888888888888888 7888888887774 566531 22211111 123366777777776665
Q ss_pred HHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 005000 477 IQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKN 510 (720)
Q Consensus 477 ~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~ 510 (720)
.. +-.- ...|-....--.|.|++..|.+++.+
T Consensus 88 ~~-hKkF-AKiwi~~AqFEiRqgnl~kARkILg~ 119 (161)
T 4h7y_A 88 AN-CKKF-AFVHISFAQFELSQGNVKKSKQLLQK 119 (161)
T ss_dssp HH-CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HH-hHHH-HHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 32 1111 33333333333444444444444443
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=91.55 E-value=18 Score=39.25 Aligned_cols=114 Identities=12% Similarity=0.064 Sum_probs=69.6
Q ss_pred CChHHHHHHHHHHHHCCCCCChHHHH----HHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHH
Q 005000 428 GHGDKSLDMFSQMLRASIIPDEVTYV----GVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNE 503 (720)
Q Consensus 428 g~~~~A~~l~~~m~~~g~~p~~~t~~----~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~e 503 (720)
.+.+.|..+|....... ..+..... .+.......+...++...+.... .. .++.....-.+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAI-MR--SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHH-HT--CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc-cc--CCChHHHHHHHHHHHHCCCHHH
Confidence 37899999999887543 22332222 22223333443556666776653 22 2333333334444557899999
Q ss_pred HHHHHHhCCCCC-CHHHH-HHHHHHHHhcCCHHHHHHHHHHHHh
Q 005000 504 ALEVIKNMPMKP-NSIVW-GALLGACRVHRDAEMAEMAAKQILE 545 (720)
Q Consensus 504 A~~~~~~~~~~p-~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~ 545 (720)
|...|+.|+..+ +..-| .=+..+....|+.++|..+++++.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999996443 22222 2234567788999999999999875
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=88.91 E-value=4.5 Score=31.31 Aligned_cols=58 Identities=21% Similarity=0.228 Sum_probs=35.4
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 005000 291 GYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTI 351 (720)
Q Consensus 291 ~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 351 (720)
.+...|++++|..+.+.+.-||.+.|-++... +.|..+++...+.++..+| .|....|
T Consensus 49 SLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTCC-CHHHHHH
T ss_pred HHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 34555666666666666666666666666543 5677777777776776665 4444443
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=88.53 E-value=4.2 Score=31.41 Aligned_cols=59 Identities=14% Similarity=0.112 Sum_probs=39.9
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 005000 290 TGYINRGQVDMARQYFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTI 351 (720)
Q Consensus 290 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 351 (720)
..+...|++++|..+.+.+.-||.+.|-++... +.|..+++...+.++..+| .|....|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHHTCS-SHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 345566777777777777777777777766543 6788888888887777776 4444444
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=88.52 E-value=0.71 Score=39.14 Aligned_cols=51 Identities=12% Similarity=0.039 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 531 RDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 531 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
+|.++|.++|+.++++...-+..+...+..-.++|+...|++++......+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 556666666666655533333444445555556666666666666665543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=88.26 E-value=25 Score=39.87 Aligned_cols=149 Identities=11% Similarity=0.090 Sum_probs=64.8
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HhccCcHHHHHHHHHHHHHcCCCCChhHh--hHHhhhhhhcCC
Q 005000 323 YLRVNRFREALTLFREMQTSNIRPDEFTIVSILTA--CANLGALELGEWVKTYIDKNKVKNDIFVG--NALIDMYCKCGD 398 (720)
Q Consensus 323 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a~~i~~~~~~~~~~~~~~~~--~~li~~y~~~g~ 398 (720)
++-.|+.+....++..+.+.. +......+..+ +...|+.+.+..+.+.+.... .|..... .++.-+|+..|+
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCC
T ss_pred hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCC
Confidence 334455555555555554421 22222222222 234555555555555554421 2222111 233445666666
Q ss_pred HHHHHHHHHhccC-C--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCh-hhHHHHHHH
Q 005000 399 VEKAQRVFREMLR-K--DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMV-DEGREYFAD 474 (720)
Q Consensus 399 ~~~A~~~~~~~~~-~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~-~~a~~~~~~ 474 (720)
.....+++..+.. + ++...-.+.-|+...|+.+.+.++++.+.+.+ .|....-..+.-+....|.. .++...+..
T Consensus 576 ~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~ 654 (963)
T 4ady_A 576 NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDP 654 (963)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 6666656665532 1 22222222233344555555555555444432 33333222233333333333 455666665
Q ss_pred HH
Q 005000 475 MT 476 (720)
Q Consensus 475 m~ 476 (720)
+.
T Consensus 655 L~ 656 (963)
T 4ady_A 655 LT 656 (963)
T ss_dssp HH
T ss_pred Hc
Confidence 53
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=86.58 E-value=48 Score=37.57 Aligned_cols=215 Identities=10% Similarity=0.024 Sum_probs=97.5
Q ss_pred HHHhcCCHHHHHHHHhhCCCC----Cc--cchHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCC---HHHH--HHHHHH
Q 005000 291 GYINRGQVDMARQYFDQMPER----DY--VLWTAMIDGYLRVNRFREALTLFREMQTSNI--RPD---EFTI--VSILTA 357 (720)
Q Consensus 291 ~~~~~g~~~~A~~~f~~~~~~----~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~---~~t~--~~ll~~ 357 (720)
|....|+.+++..+++.-... +. ..-..+.-|....|..++++.++.......- .-+ ...- ..+--+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 345567777777777665542 11 1223344455666666667776666554210 000 1111 111111
Q ss_pred H--hccCcHHHHHHHHHHHHHcCCC-CChhHhhHHhhhhhhcCCHHHHHHHHHhccCC-C--HHHHHHHHHHHHHcCChH
Q 005000 358 C--ANLGALELGEWVKTYIDKNKVK-NDIFVGNALIDMYCKCGDVEKAQRVFREMLRK-D--KFTWTAMIVGLAINGHGD 431 (720)
Q Consensus 358 ~--~~~~~~~~a~~i~~~~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-~--~~~~~~li~~~~~~g~~~ 431 (720)
. ...++- .+...+..+....-. ......-+|.-.|.-.|+.+....++..+.+. + +.-.-++.-|+...|+.+
T Consensus 463 la~~GS~~e-ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 463 LAAMGSANI-EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HHSTTCCCH-HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HHhcCCCCH-HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 1 122232 223333333322110 00112223344455566666666666654322 2 222223334445667777
Q ss_pred HHHHHHHHHHHCCCCCCh-HHHH---HHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 005000 432 KSLDMFSQMLRASIIPDE-VTYV---GVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEV 507 (720)
Q Consensus 432 ~A~~l~~~m~~~g~~p~~-~t~~---~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~ 507 (720)
.+..+.+.+... +|. .-|. .+.-+|+..|+.....+++..+.. ....++.-...+.-++.-.|+.+.+.++
T Consensus 542 ~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~--d~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 542 LADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS--DSNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc--CCcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 777777777653 222 2222 233456677777666667776652 2222333222222333345655555555
Q ss_pred HHhC
Q 005000 508 IKNM 511 (720)
Q Consensus 508 ~~~~ 511 (720)
++.+
T Consensus 617 v~~L 620 (963)
T 4ady_A 617 VQLL 620 (963)
T ss_dssp TTTG
T ss_pred HHHH
Confidence 5544
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.98 E-value=5 Score=34.69 Aligned_cols=30 Identities=7% Similarity=0.104 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 005000 485 EAHYGCMVDLLGRAGHLNEALEVIKNMPMK 514 (720)
Q Consensus 485 ~~~~~~li~~~~~~g~~~eA~~~~~~~~~~ 514 (720)
.+.---+...|.+.|++++|+.+++.+|.+
T Consensus 122 ~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 122 IEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 344344666777777777777777777533
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=82.27 E-value=38 Score=34.21 Aligned_cols=57 Identities=9% Similarity=-0.044 Sum_probs=24.8
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHcCCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 005000 455 VLSACTHTGMVDEGREYFADMTIQHGIEPN----EAHYGCMVDLLGRAGHLNEALEVIKNM 511 (720)
Q Consensus 455 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~~ 511 (720)
++..+...|++.+|.+++..+.+...-..+ .+.|..-+.+|...|++.++...+.+.
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a 165 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSA 165 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 344444555555555555444432211111 233444444555555555555544433
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=82.06 E-value=6.8 Score=30.50 Aligned_cols=63 Identities=11% Similarity=0.215 Sum_probs=48.9
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHH
Q 005000 429 HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVD 493 (720)
Q Consensus 429 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 493 (720)
+.-+..+-++.+....+.|+.....+.|.||.+.+++..|.++|+.++.+.| +...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 3445666666777778899999999999999999999999999999875544 34556776664
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=81.85 E-value=9.3 Score=31.60 Aligned_cols=37 Identities=19% Similarity=0.130 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchH
Q 005000 518 IVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVY 554 (720)
Q Consensus 518 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 554 (720)
..+--|.-++.+.|+++.|.+..+.+++.+|+|..+.
T Consensus 79 d~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 79 ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 3455566778888888888888888888888875443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=81.10 E-value=3.6 Score=41.97 Aligned_cols=58 Identities=14% Similarity=0.038 Sum_probs=41.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 522 ALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 522 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
.++.++...|+++++...+++++..+|-+...+..|+.+|.+.|+..+|.+.|+...+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455566677777777777777777777777777777777777777777777666543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.51 E-value=4.5 Score=34.98 Aligned_cols=121 Identities=12% Similarity=0.046 Sum_probs=65.5
Q ss_pred CCCCCChH--HHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCcc-------HHHHHHHHHHHHhcCCHHHHHHHHHhC--
Q 005000 443 ASIIPDEV--TYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN-------EAHYGCMVDLLGRAGHLNEALEVIKNM-- 511 (720)
Q Consensus 443 ~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-------~~~~~~li~~~~~~g~~~eA~~~~~~~-- 511 (720)
.|+.|... ++..-+..+...|.++.|+-+.+.+..-.+..|+ ..++..+.+++...|++..|...|++.
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 34555443 4445566777888888888877765533333343 235566778888888888888887764
Q ss_pred -----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHH
Q 005000 512 -----PMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMI 577 (720)
Q Consensus 512 -----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 577 (720)
+..|+. ..++. ..... ..-..+ +.+...-+.++.+|.+.|++++|..+++.+
T Consensus 92 ~~k~l~k~~s~--~~~~~----~~ss~-------p~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 92 QKKALSKTSKV--RPSTG----NSAST-------PQSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHCC---------------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHhcCCCc--ccccc----ccCCC-------cccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 111111 10110 00000 000111 223456677999999999999999998764
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=80.15 E-value=25 Score=29.45 Aligned_cols=36 Identities=19% Similarity=0.159 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchH
Q 005000 519 VWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVY 554 (720)
Q Consensus 519 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 554 (720)
...-|.-++.+.|+++.|.+..+.+++.+|+|..+.
T Consensus 79 cLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 79 CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 344566789999999999999999999999985543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 720 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-07 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-06 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 8e-04 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.8 bits (120), Expect = 3e-07
Identities = 44/372 (11%), Positives = 106/372 (28%), Gaps = 19/372 (5%)
Query: 292 YINRGQVDMARQYFDQMPERD---YVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDE 348
G + A ++ Q+ ++ + + + + R + P
Sbjct: 9 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFST--LAIKQNPLL 66
Query: 349 FTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFRE 408
S L + I L GD+E A + +
Sbjct: 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVS 126
Query: 409 MLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII-PDEVTYVGVLSACTHTGMVDE 467
L+ + + + + + + L+A P+ L +
Sbjct: 127 ALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIW 186
Query: 468 GREYFADMTIQHGIEPNEAH-YGCMVDLLGRAGHLNEALEVIKNMP--MKPNSIVWGALL 524
+ + + ++PN Y + ++L A + A+ +++V G L
Sbjct: 187 LAIHHFEKAVT--LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 244
Query: 525 GACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKK 584
++A ++ +EL P Y L N + ++
Sbjct: 245 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYN----TALRL 300
Query: 585 TPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEED 644
P + N + G+ + +Y K E+ + F +++ V G+
Sbjct: 301 CPTHADSLNNLANIKREQGN--IEEAVRLYRKALEVFPE--FAAAHSNLASVLQQQGKLQ 356
Query: 645 KERAVYQHSEKL 656
+ Y+ + ++
Sbjct: 357 EALMHYKEAIRI 368
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.3 bits (116), Expect = 1e-06
Identities = 50/390 (12%), Positives = 112/390 (28%), Gaps = 34/390 (8%)
Query: 191 YKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSAC-AKLKDLDVGKRAHRYVKEC-KIV 248
+ F+ + ++ R+ P + ++L+LS+ + + LD R+ + K
Sbjct: 9 EYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLD---RSAHFSTLAIKQN 63
Query: 249 PNLI-----LENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQ 303
P L L N + + + +
Sbjct: 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA 123
Query: 304 YFDQMPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGA 363
Y + + G L R ++ +P+ A +NLG
Sbjct: 124 YVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN------FAVAWSNLGC 177
Query: 364 --LELGEWVKTYIDKNKV----KNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTW 417
GE K N + L ++ + ++A + L
Sbjct: 178 VFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA 237
Query: 418 TAMI---VGLAINGHGDKSLDMFSQMLRASIIPDEV-TYVGVLSACTHTGMVDEGREYFA 473
G D ++D + + + + P Y + +A G V E + +
Sbjct: 238 VVHGNLACVYYEQGLIDLAIDTYRRAI--ELQPHFPDAYCNLANALKEKGSVAEAEDCYN 295
Query: 474 DMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKN-MPMKPNSIVWGALLGACRVHR- 531
+ + ++ G++ EA+ + + + + P + L + +
Sbjct: 296 TALRLC--PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG 353
Query: 532 DAEMAEMAAKQILELDPDNEAVYVLLCNIY 561
+ A M K+ + + P Y + N
Sbjct: 354 KLQEALMHYKEAIRISPTFADAYSNMGNTL 383
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 39.9 bits (91), Expect = 8e-04
Identities = 20/305 (6%), Positives = 65/305 (21%), Gaps = 8/305 (2%)
Query: 363 ALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIV 422
A L + + + I + L ++ G++ ++ + ++ + +
Sbjct: 31 AERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 90
Query: 423 GLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIE 482
++ + + R + ++
Sbjct: 91 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLD 150
Query: 483 PNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQ 542
EA +++L + + + E
Sbjct: 151 EAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLN------RLENLLGN 204
Query: 543 ILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMN--GVVHEF 600
+ + + N
Sbjct: 205 GKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILL 264
Query: 601 VAGDKSHPQTKEIYLKLDEMTSDLKFVGYMPDISEVFLDVGEEDKERAVYQHSEKLAMAF 660
+ + +E+ + + +++++ G + + V + KLA
Sbjct: 265 GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT 324
Query: 661 GLISS 665
G IS
Sbjct: 325 GFISH 329
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 720 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.89 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.87 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.54 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.52 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.1 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.97 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.96 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.94 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.93 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.9 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.9 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.82 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.8 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.69 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.64 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.63 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.55 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.5 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.5 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.49 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.48 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.41 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.38 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.36 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.35 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.32 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.29 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.28 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.25 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.23 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.15 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.14 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.12 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.11 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.08 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.06 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.04 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.02 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.69 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.65 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.63 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.63 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.59 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.59 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.58 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.54 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.52 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.4 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.24 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.2 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.19 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.93 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.9 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.79 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.97 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.55 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.65 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 93.04 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 92.83 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 91.83 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 91.45 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 83.01 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 80.99 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=8e-20 Score=189.54 Aligned_cols=369 Identities=12% Similarity=0.113 Sum_probs=262.1
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHH
Q 005000 190 GYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGF 269 (720)
Q Consensus 190 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 269 (720)
.+.+.|++++|++.|+++.+.. +-+...+..+...+.+.|++++|...++.+++.. +.+..++..+..+|.+.|++++
T Consensus 8 ~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~ 85 (388)
T d1w3ba_ 8 REYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccccc
Confidence 3445555555555555555432 1123444445555555556666666555555543 2244555556666666666666
Q ss_pred HHHHHhhcCCC---CchhHHHHHHHHHhcCCHHHHHHHHhh---CCCCCccchHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 005000 270 ALEIFGNIKNK---DVISWTAIVTGYINRGQVDMARQYFDQ---MPERDYVLWTAMIDGYLRVNRFREALTLFREMQTSN 343 (720)
Q Consensus 270 A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 343 (720)
|...+...... +...+..........+....+...... ........+..........+....+...+.......
T Consensus 86 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (388)
T d1w3ba_ 86 AIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccC
Confidence 66666554431 222222223333333333222222222 122344455556666777778888888877776643
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhcc---CCCHHHHHHH
Q 005000 344 IRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREML---RKDKFTWTAM 420 (720)
Q Consensus 344 ~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~l 420 (720)
+-+...+..+...+...+..+.|...+..+.+.. +.+..++..+...|...|++++|...|+... ..+...|..+
T Consensus 166 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 243 (388)
T d1w3ba_ 166 -PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNL 243 (388)
T ss_dssp -TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred -cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHH
Confidence 3345666677777888889999988888887764 4456788889999999999999999998874 3467788889
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 005000 421 IVGLAINGHGDKSLDMFSQMLRASIIPD-EVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAG 499 (720)
Q Consensus 421 i~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 499 (720)
...+...|++++|+..|++..+. .|+ ..++..+..++...|++++|.+.++.... ..+.+...+..+...|.+.|
T Consensus 244 ~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~ 319 (388)
T d1w3ba_ 244 ACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc--cCCccchhhhHHHHHHHHCC
Confidence 99999999999999999999885 454 46788889999999999999999998863 33556788889999999999
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCC
Q 005000 500 HLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNR 566 (720)
Q Consensus 500 ~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 566 (720)
++++|++.+++. ...| +..+|..+...+...|++++|+..++++++++|+++.+|..|+.+|.+.|+
T Consensus 320 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 999999999986 5667 577889999999999999999999999999999999999999999998875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=5.3e-19 Score=183.23 Aligned_cols=351 Identities=12% Similarity=0.038 Sum_probs=285.3
Q ss_pred HHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCchhHHHHHHHHHhcCCHH
Q 005000 223 LSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKN---KDVISWTAIVTGYINRGQVD 299 (720)
Q Consensus 223 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 299 (720)
...+.+.|++++|.+.+..+++.. +.+..++..+..+|.+.|++++|...|++..+ .+..+|..+...|.+.|+++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccc
Confidence 345567899999999999998874 34678888999999999999999999998764 35678999999999999999
Q ss_pred HHHHHHhhCCCC---CccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 005000 300 MARQYFDQMPER---DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDK 376 (720)
Q Consensus 300 ~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 376 (720)
+|...+...... +...+..........+....+............. ...............+....+.........
T Consensus 85 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T d1w3ba_ 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccchhhhhHHHHHHhhc
Confidence 999999887643 3344555555666667777777766666554433 333344444555666677777776666665
Q ss_pred cCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHH
Q 005000 377 NKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYV 453 (720)
Q Consensus 377 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 453 (720)
.. +.+...+..+...+...|++++|...++...+ .+...|..+...+...|++++|+..+++..... ..+...+.
T Consensus 164 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 241 (388)
T d1w3ba_ 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG 241 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHH
Confidence 54 44567788889999999999999999997742 367789999999999999999999999998864 34556778
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcC
Q 005000 454 GVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-P-MKPNSIVWGALLGACRVHR 531 (720)
Q Consensus 454 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~-~~p~~~~~~~ll~~~~~~g 531 (720)
.+...+...|++++|...|+++.+. .+-+...+..+...|.+.|++++|.+.++.. . .+.+...+..+...+...|
T Consensus 242 ~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 319 (388)
T d1w3ba_ 242 NLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCC
Confidence 8888999999999999999998632 2335778899999999999999999999887 2 3447888999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 532 DAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 532 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
++++|+..+++++++.|+++.++..++.+|.+.|++++|.+.+++..+
T Consensus 320 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 367 (388)
T d1w3ba_ 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998875
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=3.4e-13 Score=135.49 Aligned_cols=243 Identities=15% Similarity=0.020 Sum_probs=163.2
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhh
Q 005000 316 WTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCK 395 (720)
Q Consensus 316 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~ 395 (720)
+-.....+.+.|++++|+..|+++++.. +-+..++..+..++...|+++.|...+..+++.. +.+...+..+...|.+
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 99 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTN 99 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccc
Confidence 3345667888888888888888888753 2234555555556666666666666666655543 2334455555555555
Q ss_pred cCCHHHHHHHHHhccCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHH
Q 005000 396 CGDVEKAQRVFREMLRKDKF---TWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYF 472 (720)
Q Consensus 396 ~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 472 (720)
.|++++|.+.++.....+.. .+....... ...+.......+..+...+..+++...|
T Consensus 100 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 159 (323)
T d1fcha_ 100 ESLQRQACEILRDWLRYTPAYAHLVTPAEEGA--------------------GGAGLGPSKRILGSLLSDSLFLEVKELF 159 (323)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHhccchHHHHHhhhhhh--------------------hhcccccchhhHHHHHHhhHHHHHHHHH
Confidence 55555555555544221100 000000000 0000001111222334456677888888
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 005000 473 ADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDN 550 (720)
Q Consensus 473 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 550 (720)
....+...-.++...+..+...+.+.|++++|+..+++. ...| +..+|..+...+...|++++|...++++++++|++
T Consensus 160 ~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 239 (323)
T d1fcha_ 160 LAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY 239 (323)
T ss_dssp HHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhcc
Confidence 877654444456788888999999999999999999986 4445 57889999999999999999999999999999999
Q ss_pred cchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 551 EAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 551 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
+.++..++.+|.+.|++++|.+.+++..+.
T Consensus 240 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 240 IRSRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999988763
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=1.3e-12 Score=131.08 Aligned_cols=269 Identities=9% Similarity=-0.010 Sum_probs=194.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCCC---CccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 005000 284 SWTAIVTGYINRGQVDMARQYFDQMPER---DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACAN 360 (720)
Q Consensus 284 ~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 360 (720)
.+-.....+.+.|++++|...|+++.+. +..+|..+...|...|++++|+..|.+..+.. +-+...+..+...+..
T Consensus 21 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 99 (323)
T d1fcha_ 21 QPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTN 99 (323)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccc
Confidence 3445667789999999999999987643 56689999999999999999999999998753 3356777788888999
Q ss_pred cCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005000 361 LGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQM 440 (720)
Q Consensus 361 ~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 440 (720)
.|+++.|...+..+.+.. |+.............. .+.......+..+...+...+|.+.|.+.
T Consensus 100 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 162 (323)
T d1fcha_ 100 ESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGG---------------AGLGPSKRILGSLLSDSLFLEVKELFLAA 162 (323)
T ss_dssp TTCHHHHHHHHHHHHHTS--TTTGGGCC------------------------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHhc--cchHHHHHhhhhhhhh---------------cccccchhhHHHHHHhhHHHHHHHHHHHH
Confidence 999999999999988754 2211110000000000 01111111122334456677888888887
Q ss_pred HHCCC-CCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CH
Q 005000 441 LRASI-IPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NS 517 (720)
Q Consensus 441 ~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~ 517 (720)
..... .++...+..+...+...|++++|+..|+...... +-+...|..+...|.+.|++++|.+.+++. ...| +.
T Consensus 163 l~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 240 (323)
T d1fcha_ 163 VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI 240 (323)
T ss_dssp HHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc--cccccchhhhhhcccccccchhHHHHHHHHHHHhhccH
Confidence 76432 2345677788888999999999999999886332 235778889999999999999999999987 4556 57
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchH-----------HHHHhHhhhcCChhHHHH
Q 005000 518 IVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVY-----------VLLCNIYAACNRWDNFRE 572 (720)
Q Consensus 518 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~-----------~~l~~~~~~~g~~~~a~~ 572 (720)
.+|..+..+|...|++++|+..++++++++|++...+ ..+..++...|+++.+..
T Consensus 241 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 241 RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 7899999999999999999999999999998876543 445556666666655543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.10 E-value=1.7e-08 Score=101.42 Aligned_cols=260 Identities=11% Similarity=-0.012 Sum_probs=174.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCC-----CChhHhhHHh
Q 005000 320 IDGYLRVNRFREALTLFREMQTSNIRPD----EFTIVSILTACANLGALELGEWVKTYIDKNKVK-----NDIFVGNALI 390 (720)
Q Consensus 320 i~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~-----~~~~~~~~li 390 (720)
...+...|++++|+.++++..+.....+ ...+..+...+...|+++.|...+..+.+.... .....+..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 3445566666666666666655321111 123444445556666666666666655432110 1123445566
Q ss_pred hhhhhcCCHHHHHHHHHhccC-------C----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC----CChHHHHHH
Q 005000 391 DMYCKCGDVEKAQRVFREMLR-------K----DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASII----PDEVTYVGV 455 (720)
Q Consensus 391 ~~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~----p~~~t~~~l 455 (720)
..|...|++..|...+..... + ....+..+...+...|+++.+...+.+....... ....++...
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 178 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 777788888888877776521 1 1234556677788899999999999888764222 222455556
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHcCCCc-----cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-----CHHHHHHHH
Q 005000 456 LSACTHTGMVDEGREYFADMTIQHGIEP-----NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-----NSIVWGALL 524 (720)
Q Consensus 456 l~a~~~~g~~~~a~~~~~~m~~~~~~~p-----~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-----~~~~~~~ll 524 (720)
...+...+...++...+........-.. ....+..+...+...|++++|...+++. ...| ....+..+.
T Consensus 179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la 258 (366)
T d1hz4a_ 179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 258 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 6677788999999888877653322221 1334566777889999999999999887 2222 245667788
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc------CCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 525 GACRVHRDAEMAEMAAKQILEL------DPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 525 ~~~~~~g~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
.++...|++++|...+++++.. .|....++..++.+|.+.|++++|.+.+++..+
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 259 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8999999999999999998743 455667889999999999999999999988755
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.97 E-value=7.7e-08 Score=94.73 Aligned_cols=187 Identities=10% Similarity=0.020 Sum_probs=144.4
Q ss_pred CcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCC---C-HHHHHHHHHHHHHcCChHHHHHHH
Q 005000 362 GALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRK---D-KFTWTAMIVGLAINGHGDKSLDMF 437 (720)
Q Consensus 362 ~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~-~~~~~~li~~~~~~g~~~~A~~l~ 437 (720)
+..+.+..+++..++...+.+...+..++..+.+.|+++.|..+|+.+... + ...|...+....+.|+.++|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 345777888888887665666778888888899999999999999987532 3 447888888888999999999999
Q ss_pred HHHHHCCCCCChHHHHHHHHH-HHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC----C
Q 005000 438 SQMLRASIIPDEVTYVGVLSA-CTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM----P 512 (720)
Q Consensus 438 ~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~----~ 512 (720)
++++..+.. +...|...... +...|+.+.|..+|+.+... .+.+...|...++.+.+.|++++|..+|++. +
T Consensus 158 ~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 158 KKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 998876432 33344433332 34468899999999988754 3445778888999999999999999999886 3
Q ss_pred CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 005000 513 MKP--NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNE 551 (720)
Q Consensus 513 ~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 551 (720)
..| ....|...+..-..+|+.+.+..+.+++.+..|++.
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 444 256888888888899999999999999988888753
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=9e-09 Score=101.77 Aligned_cols=190 Identities=14% Similarity=0.146 Sum_probs=117.7
Q ss_pred HhhHHhhhhhhcCCHHHHHHHHHhccC--C-CHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHH
Q 005000 385 VGNALIDMYCKCGDVEKAQRVFREMLR--K-DKFTWTAMIVGLAING-HGDKSLDMFSQMLRASIIPD-EVTYVGVLSAC 459 (720)
Q Consensus 385 ~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~ 459 (720)
+++-+...+.+.+..++|++.++++.+ | +...|+.....+...| +.++|+..+++.++. .|+ ..+|..+...+
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~--~p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--HHhhhhHHHHHhHHH
Confidence 344455556666666777777766642 2 4556666666666655 367777777776664 333 35666666666
Q ss_pred HhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC-----
Q 005000 460 THTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRD----- 532 (720)
Q Consensus 460 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~----- 532 (720)
...|++++|+..++.+.+. -+.+...|..+...+.+.|++++|++.++++ ...| +...|+.+...+...+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~--dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HhhccHHHHHHHHhhhhhh--hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhh
Confidence 7777777777777766522 1224566666777777777777777777666 4444 55666666555544443
Q ss_pred -HHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 533 -AEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 533 -~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
+++|...+.++++++|++..++..++.++...| .+++.+.++...+
T Consensus 201 ~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 201 VLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLD 247 (315)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHH
Confidence 566777777777777777777777777665544 4556666655544
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=3.9e-08 Score=97.03 Aligned_cols=220 Identities=15% Similarity=0.181 Sum_probs=154.7
Q ss_pred chHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhh
Q 005000 315 LWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYC 394 (720)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~ 394 (720)
.|+.+...+.+.+.+++|+.+++++++. . +.+..+|+.....+.
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~l--n----------------------------------P~~~~a~~~r~~~l~ 88 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIEL--N----------------------------------AANYTVWHFRRVLLK 88 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH--C----------------------------------TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHH--C----------------------------------CCChHHHHHHHHHHH
Confidence 3455555566666666666666666653 2 334455666666666
Q ss_pred hcC-CHHHHHHHHHhcc---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCChhhHH
Q 005000 395 KCG-DVEKAQRVFREML---RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIP-DEVTYVGVLSACTHTGMVDEGR 469 (720)
Q Consensus 395 ~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~ 469 (720)
+.| ++++|...++... ..+..+|+.+...+...|++++|++.++++++. .| +...|..+...+.+.|++++|+
T Consensus 89 ~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~--dp~n~~a~~~~~~~~~~~~~~~~Al 166 (315)
T d2h6fa1 89 SLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNEL 166 (315)
T ss_dssp HTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred HhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhh--hhcchHHHHHHHHHHHHHHhhHHHH
Confidence 655 4788888887764 346778888888888899999999999998885 34 4578888888899999999999
Q ss_pred HHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCC------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 005000 470 EYFADMTIQHGIEP-NEAHYGCMVDLLGRAGH------LNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAA 540 (720)
Q Consensus 470 ~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~------~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 540 (720)
+.++.+.+ +.| +...|+.+..++.+.|. +++|.+.+.++ ...| +...|..+...+... ..+++...+
T Consensus 167 ~~~~~al~---~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~-~~~~~~~~~ 242 (315)
T d2h6fa1 167 QYVDQLLK---EDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLL 242 (315)
T ss_dssp HHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT-CGGGCHHHH
T ss_pred HHHHHHHH---HCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhc-ChHHHHHHH
Confidence 99998873 234 56677777777777665 57888888776 4556 678888887766554 467888999
Q ss_pred HHHHhcCCCCc--chHHHHHhHhhhc--CChhHHHHHHHH
Q 005000 541 KQILELDPDNE--AVYVLLCNIYAAC--NRWDNFRELRQM 576 (720)
Q Consensus 541 ~~~~~~~p~~~--~~~~~l~~~~~~~--g~~~~a~~~~~~ 576 (720)
++++++.|+.. ..+..++.+|... +..+.+...+++
T Consensus 243 ~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~k 282 (315)
T d2h6fa1 243 NQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNK 282 (315)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99999888754 3455677777543 444444444433
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.93 E-value=8.7e-10 Score=110.62 Aligned_cols=231 Identities=9% Similarity=-0.069 Sum_probs=165.5
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC--cHHHHHHHHHHHHHcCCCCChhHh-hHHhhhhhhcCCHH
Q 005000 324 LRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLG--ALELGEWVKTYIDKNKVKNDIFVG-NALIDMYCKCGDVE 400 (720)
Q Consensus 324 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~--~~~~a~~i~~~~~~~~~~~~~~~~-~~li~~y~~~g~~~ 400 (720)
...|++++|+..++...+.. +-+...+.....++...+ +.+.+...+..+.+... ++...+ ..+...+...|..+
T Consensus 84 ~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~ 161 (334)
T d1dcea1 84 ESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPA 161 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccH
Confidence 34455777888888877653 224444454544444444 57788888887777642 334443 34556777889999
Q ss_pred HHHHHHHhccCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 005000 401 KAQRVFREMLRK---DKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTI 477 (720)
Q Consensus 401 ~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 477 (720)
+|...++...+. +..+|+.+...+.+.|++++|...+++.... .|+. ......+...+..+++...+.....
T Consensus 162 ~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~ 236 (334)
T d1dcea1 162 EELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLL 236 (334)
T ss_dssp HHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHH
Confidence 999999988643 6778999999999999988887666554432 2222 2233445667788888888887752
Q ss_pred HcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 005000 478 QHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYV 555 (720)
Q Consensus 478 ~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 555 (720)
.-.++...+..++..+...|+.++|.+.+.+. ...| +..+|..+...+...|++++|...++++++++|++...|.
T Consensus 237 --~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~ 314 (334)
T d1dcea1 237 --GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 314 (334)
T ss_dssp --SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred --hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHH
Confidence 23344555667778888899999999999886 5556 4667888889999999999999999999999999888888
Q ss_pred HHHhHhhh
Q 005000 556 LLCNIYAA 563 (720)
Q Consensus 556 ~l~~~~~~ 563 (720)
.|+..+.-
T Consensus 315 ~L~~~~~~ 322 (334)
T d1dcea1 315 DLRSKFLL 322 (334)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhH
Confidence 88777653
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.90 E-value=1.1e-07 Score=95.05 Aligned_cols=259 Identities=8% Similarity=-0.015 Sum_probs=157.1
Q ss_pred chHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHH----cCCCCC---
Q 005000 315 LWTAMIDGYLRVNRFREALTLFREMQTSNI-RPD----EFTIVSILTACANLGALELGEWVKTYIDK----NKVKND--- 382 (720)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~~~~a~~i~~~~~~----~~~~~~--- 382 (720)
.++.+...|...|++++|+..|++...... .++ ..++..+...+...|++..+...+..... ......
T Consensus 53 a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~ 132 (366)
T d1hz4a_ 53 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 132 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHH
Confidence 345555666666666666666666543210 111 12333444455566666666666555432 111111
Q ss_pred hhHhhHHhhhhhhcCCHHHHHHHHHhccC--------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCh---
Q 005000 383 IFVGNALIDMYCKCGDVEKAQRVFREMLR--------KDKFTWTAMIVGLAINGHGDKSLDMFSQMLRA--SIIPDE--- 449 (720)
Q Consensus 383 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~--- 449 (720)
...+..+...|...|+++.|...+..... ....++..+...+...++..++...+.+.... ......
T Consensus 133 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~ 212 (366)
T d1hz4a_ 133 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 212 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchH
Confidence 22445566777788888888888776631 12345556666777888888888887775541 111111
Q ss_pred -HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCC--CccHHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HH
Q 005000 450 -VTYVGVLSACTHTGMVDEGREYFADMTIQHGI--EPNEAHYGCMVDLLGRAGHLNEALEVIKNM-------PMKPN-SI 518 (720)
Q Consensus 450 -~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-------~~~p~-~~ 518 (720)
..+..+...+...|++++|...++.......- ......+..+...|...|++++|.+.+++. +..|+ ..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 292 (366)
T d1hz4a_ 213 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 292 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHH
Confidence 23445556677888999998888765311111 112345666788889999999998888765 33343 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---------cchHHHHHhHhhhcCChhHHHHH
Q 005000 519 VWGALLGACRVHRDAEMAEMAAKQILELDPDN---------EAVYVLLCNIYAACNRWDNFREL 573 (720)
Q Consensus 519 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~a~~~ 573 (720)
+|..+...+...|++++|...+++++++.+.. ...+..+...+...++.+++.+-
T Consensus 293 ~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 293 NLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 67778888999999999999999998864321 12233344455566777776553
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.90 E-value=1.5e-08 Score=97.01 Aligned_cols=199 Identities=11% Similarity=-0.027 Sum_probs=115.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccC---CCHHHHHHHHHHHHH
Q 005000 350 TIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLR---KDKFTWTAMIVGLAI 426 (720)
Q Consensus 350 t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 426 (720)
++..+-..+.+.|+++.|...+..+++.. +.+..+++.+..+|.+.|++++|...|++..+ .+..+|..+...|..
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 117 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 117 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH
Confidence 33334445556666666666666666543 44566777778888888888888888877742 245677777788888
Q ss_pred cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC----CHH
Q 005000 427 NGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAG----HLN 502 (720)
Q Consensus 427 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g----~~~ 502 (720)
.|++++|++.|++.++.. +.+......+..+....+..+....+..... . ..++...++ ++..+.... ..+
T Consensus 118 ~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~-~~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 118 GGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE-K--SDKEQWGWN-IVEFYLGNISEQTLME 192 (259)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH-H--SCCCSTHHH-HHHHHTTSSCHHHHHH
T ss_pred HhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhh-c--cchhhhhhh-HHHHHHHHHHHHHHHH
Confidence 888888888888877742 1233333333334445555444444444443 2 122222222 222222111 122
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchH
Q 005000 503 EALEVIKNM-PMKPN-SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVY 554 (720)
Q Consensus 503 eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 554 (720)
.+...+... ...|+ ..+|..+...+...|++++|...++++++.+|++...|
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 246 (259)
T d1xnfa_ 193 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 246 (259)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred HHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 222222111 11232 34667778888888999999999999998888875444
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.82 E-value=2.4e-08 Score=95.62 Aligned_cols=193 Identities=11% Similarity=0.019 Sum_probs=138.7
Q ss_pred hHhhHHhhhhhhcCCHHHHHHHHHhcc---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHH
Q 005000 384 FVGNALIDMYCKCGDVEKAQRVFREML---RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD-EVTYVGVLSAC 459 (720)
Q Consensus 384 ~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~ 459 (720)
.++..+...|.+.|++++|...|++.. ..++.+|+.+..+|.+.|++++|++.|++.++. .|+ ..++..+..++
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH--HhhhhhhHHHHHHHH
Confidence 456677889999999999999999885 347889999999999999999999999999985 444 46788888999
Q ss_pred HhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH----hcCCHH
Q 005000 460 THTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPNSIVWGALLGACR----VHRDAE 534 (720)
Q Consensus 460 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~ll~~~~----~~g~~~ 534 (720)
...|++++|...|+...+.. +.+......+...+.+.+..+.+..+.... ...++...++. +..+. ..+..+
T Consensus 116 ~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI-VEFYLGNISEQTLME 192 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHH-HHHHTTSSCHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhH-HHHHHHHHHHHHHHH
Confidence 99999999999999987432 223444444555566666655555544433 12222222222 22221 122344
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 535 MAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 535 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
.+...+.......|....++..++.+|...|++++|.+.+++.....
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 193 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 44444455555567777788999999999999999999999987643
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.80 E-value=3.6e-07 Score=89.80 Aligned_cols=184 Identities=8% Similarity=0.040 Sum_probs=144.8
Q ss_pred hcCCHHHHHHHHHhcc----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHH
Q 005000 395 KCGDVEKAQRVFREML----RKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGRE 470 (720)
Q Consensus 395 ~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 470 (720)
..+..++|..+|+... ..+...|...+..+...|+.++|..+|++++..........|...+..+.+.|+++.|++
T Consensus 76 ~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~ 155 (308)
T d2onda1 76 AKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRM 155 (308)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred cccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHH
Confidence 3455688889998764 336778999999999999999999999999875333334578889999999999999999
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHH-HhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005000 471 YFADMTIQHGIEPNEAHYGCMVDLL-GRAGHLNEALEVIKNM-P-MKPNSIVWGALLGACRVHRDAEMAEMAAKQILELD 547 (720)
Q Consensus 471 ~~~~m~~~~~~~p~~~~~~~li~~~-~~~g~~~eA~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 547 (720)
+|+.+.+ ..+.+...|....... ...|+.+.|..+|+.+ . .+.+...|...+......|+++.|..+|+++++..
T Consensus 156 i~~~al~--~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~ 233 (308)
T d2onda1 156 IFKKARE--DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 233 (308)
T ss_dssp HHHHHHT--STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred HHHHHHH--hCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence 9999862 2233445555555443 4468999999999988 2 23368899999999999999999999999999987
Q ss_pred CCCcc----hHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 548 PDNEA----VYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 548 p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
|.++. .+......-...|+.+.+.++.+++.+.
T Consensus 234 ~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 234 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 76543 5666666667889999999999988653
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.69 E-value=3e-08 Score=99.05 Aligned_cols=252 Identities=6% Similarity=-0.103 Sum_probs=179.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH----HHHHHHHh-------ccCcHHHHHHHHHHHHHcCCCCChhHhh
Q 005000 319 MIDGYLRVNRFREALTLFREMQTSNIRPDEFTI----VSILTACA-------NLGALELGEWVKTYIDKNKVKNDIFVGN 387 (720)
Q Consensus 319 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~----~~ll~~~~-------~~~~~~~a~~i~~~~~~~~~~~~~~~~~ 387 (720)
++......+..++|++++++..+. .|+..+. ..++.... ..+.++.+...+..+.+.. +.+...+.
T Consensus 35 ~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~ 111 (334)
T d1dcea1 35 VFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWH 111 (334)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHH
Confidence 333333344458899999988864 5665442 12222222 3445778888888887765 44566666
Q ss_pred HHhhhhhhcC--CHHHHHHHHHhccC---CCHHHHHHH-HHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 005000 388 ALIDMYCKCG--DVEKAQRVFREMLR---KDKFTWTAM-IVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTH 461 (720)
Q Consensus 388 ~li~~y~~~g--~~~~A~~~~~~~~~---~~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 461 (720)
.+...+...+ ++++|...++.+.. ++...|... ...+...|.+++|+..+++++.... -+...|..+..++..
T Consensus 112 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~~~~~ 190 (334)
T d1dcea1 112 HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQ 190 (334)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHH
T ss_pred HhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 6666665554 58999999998743 356666544 4677778999999999999887632 245678888888999
Q ss_pred cCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHH
Q 005000 462 TGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMK-PNSIVWGALLGACRVHRDAEMAEMA 539 (720)
Q Consensus 462 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~ 539 (720)
.|++++|...+...... .|+ ...+...+...+..+++...+... ... ++...+..+...+...|+.++|...
T Consensus 191 ~~~~~~A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 264 (334)
T d1dcea1 191 LHPQPDSGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKE 264 (334)
T ss_dssp HSCCCCSSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHH
Confidence 99998887666544311 121 122334456677777887777765 222 3455667777788888999999999
Q ss_pred HHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 540 AKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 540 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
+.++++.+|++..++..++.+|.+.|++++|.+.+++..+.
T Consensus 265 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 265 LQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998763
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=1.7e-07 Score=77.09 Aligned_cols=90 Identities=17% Similarity=0.206 Sum_probs=71.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChh
Q 005000 491 MVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWD 568 (720)
Q Consensus 491 li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 568 (720)
-...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..++.+|...|+++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 355677778888888888776 3445 67778888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhC
Q 005000 569 NFRELRQMILDR 580 (720)
Q Consensus 569 ~a~~~~~~m~~~ 580 (720)
+|...++...+.
T Consensus 89 ~A~~~~~~a~~~ 100 (117)
T d1elwa_ 89 EAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 888888877653
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.63 E-value=7e-08 Score=88.24 Aligned_cols=92 Identities=14% Similarity=0.032 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhh
Q 005000 486 AHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAA 563 (720)
Q Consensus 486 ~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 563 (720)
..+......|.+.|++++|++.|++. ...| ++..|..+..+|...|++++|+..++++++++|+++.+|..++.+|.+
T Consensus 5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~ 84 (201)
T d2c2la1 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE 84 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 33333444444444444444444443 2222 344444444444455555555555555555555444444555555555
Q ss_pred cCChhHHHHHHHHH
Q 005000 564 CNRWDNFRELRQMI 577 (720)
Q Consensus 564 ~g~~~~a~~~~~~m 577 (720)
.|++++|...++++
T Consensus 85 l~~~~~A~~~~~~a 98 (201)
T d2c2la1 85 MESYDEAIANLQRA 98 (201)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 55555554444444
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=4.9e-07 Score=74.13 Aligned_cols=106 Identities=16% Similarity=0.109 Sum_probs=88.6
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 005000 455 VLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRD 532 (720)
Q Consensus 455 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 532 (720)
-...+...|++++|+..|....+. -+.+...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence 355677889999999999888733 2345778888899999999999999999887 4445 78899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHhHhh
Q 005000 533 AEMAEMAAKQILELDPDNEAVYVLLCNIYA 562 (720)
Q Consensus 533 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 562 (720)
+++|+..++++++++|+++.++..+.++-+
T Consensus 87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 999999999999999999988888877643
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=6.4e-07 Score=78.17 Aligned_cols=89 Identities=16% Similarity=0.093 Sum_probs=71.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChh
Q 005000 491 MVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWD 568 (720)
Q Consensus 491 li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 568 (720)
....|.+.|++++|+..|++. ...| +...|..+...+...|++++|...++++++++|+++.+|..++.+|...|+++
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHH
Confidence 345677888888888888776 3445 67778888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHh
Q 005000 569 NFRELRQMILD 579 (720)
Q Consensus 569 ~a~~~~~~m~~ 579 (720)
+|.+.+++...
T Consensus 96 eA~~~~~~a~~ 106 (159)
T d1a17a_ 96 AALRDYETVVK 106 (159)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888887765
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=6.4e-07 Score=80.80 Aligned_cols=118 Identities=11% Similarity=0.041 Sum_probs=85.9
Q ss_pred HHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 005000 458 ACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEM 535 (720)
Q Consensus 458 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 535 (720)
.+...|++++|++.|.++ .+|+...|..+...|.+.|++++|++.|++. .+.| +...|..+..++.+.|++++
T Consensus 14 ~~~~~~d~~~Al~~~~~i-----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHH
Confidence 455667777777776543 2456666777777777777777777777776 4445 57778888888888888888
Q ss_pred HHHHHHHHHhcCCCCc----------------chHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 536 AEMAAKQILELDPDNE----------------AVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 536 a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
|...++++++..|.+. .++..++.+|.+.|++++|.+.++...+.
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 8888888887655432 34667888899999999999988877654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=2e-06 Score=77.42 Aligned_cols=140 Identities=12% Similarity=-0.009 Sum_probs=94.3
Q ss_pred hhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCChhhH
Q 005000 390 IDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPD-EVTYVGVLSACTHTGMVDEG 468 (720)
Q Consensus 390 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 468 (720)
...+...|+++.|.+.|.++..++...|..+...|...|++++|++.|++.++. .|+ ...|..+..++.+.|++++|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--dp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--hhhhhhhHHHHHHHHHhhccHHHH
Confidence 445667788888888888887778888888888888888888888888888874 343 45777777788888888888
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005000 469 REYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPN-SIVWGALLGACRVHRDAEMAEMAAKQILELD 547 (720)
Q Consensus 469 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 547 (720)
...|++.... .+++... .|...| +..+++ ..++..+..++...|++++|.+.+++++++.
T Consensus 90 ~~~~~kAl~~--~~~n~~~------~~~~~~-----------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 90 IKDLKEALIQ--LRGNQLI------DYKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHT--TTTCSEE------ECGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHh--CccCchH------HHHHhh-----------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 8888776521 1111000 000000 011111 2455667777888888888888888888888
Q ss_pred CCC
Q 005000 548 PDN 550 (720)
Q Consensus 548 p~~ 550 (720)
|+.
T Consensus 151 ~~~ 153 (192)
T d1hh8a_ 151 SEP 153 (192)
T ss_dssp CSG
T ss_pred CCc
Confidence 764
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.48 E-value=1.7e-07 Score=76.27 Aligned_cols=88 Identities=16% Similarity=0.061 Sum_probs=79.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCCh
Q 005000 490 CMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRW 567 (720)
Q Consensus 490 ~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 567 (720)
.+...+.+.|++++|...|++. ...| ++.+|..+..++...|++++|+..++++++++|+++.++..|+.+|...|++
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence 3566788899999999999887 4556 6889999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHH
Q 005000 568 DNFRELRQMI 577 (720)
Q Consensus 568 ~~a~~~~~~m 577 (720)
++|.+.+++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998875
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.41 E-value=7.9e-07 Score=80.92 Aligned_cols=117 Identities=7% Similarity=-0.124 Sum_probs=94.6
Q ss_pred CChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 005000 447 PDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALL 524 (720)
Q Consensus 447 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll 524 (720)
|+...+......+...|++++|+..|.++... -+.+...|..+..+|.+.|++++|++.|++. .+.| +..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 66677777788888999999999999887633 2346778888999999999999999999987 6777 578899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcC
Q 005000 525 GACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACN 565 (720)
Q Consensus 525 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 565 (720)
.++...|++++|...++++++++|++...+...+..+...+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~ 120 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 120 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 99999999999999999999998876665555555444433
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=2.3e-06 Score=74.47 Aligned_cols=117 Identities=7% Similarity=-0.019 Sum_probs=94.5
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 005000 455 VLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRD 532 (720)
Q Consensus 455 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 532 (720)
....+.+.|++++|...|+++.+.. +-+...|..+...|.+.|++++|.+.|+++ .+.| +..+|..++.++...|+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHhhhccccc--hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 3556778899999999998887321 346778888899999999999999999887 4556 67899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHhHhh--hcCChhHHHHH
Q 005000 533 AEMAEMAAKQILELDPDNEAVYVLLCNIYA--ACNRWDNFREL 573 (720)
Q Consensus 533 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~a~~~ 573 (720)
+++|...++++++++|+++..+..+..+.. ..+.+++|...
T Consensus 94 ~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 94 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999988887776643 34556666554
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.36 E-value=2.4e-06 Score=82.83 Aligned_cols=191 Identities=9% Similarity=-0.038 Sum_probs=130.4
Q ss_pred hhHHhhhhhhcCCHHHHHHHHHhccC-----CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--hHH
Q 005000 386 GNALIDMYCKCGDVEKAQRVFREMLR-----KD----KFTWTAMIVGLAINGHGDKSLDMFSQMLRASI---IPD--EVT 451 (720)
Q Consensus 386 ~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~t 451 (720)
|....+.|..+|++++|.+.|.+..+ .+ ..+|+.+...|.+.|++++|++.+++..+... .+. ..+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 33446678889999999999887732 12 35788889999999999999999998665211 111 245
Q ss_pred HHHHHHHHH-hcCChhhHHHHHHHHHHHc---CCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-------CH-
Q 005000 452 YVGVLSACT-HTGMVDEGREYFADMTIQH---GIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-------NS- 517 (720)
Q Consensus 452 ~~~ll~a~~-~~g~~~~a~~~~~~m~~~~---~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-------~~- 517 (720)
+..+...|. ..|++++|++.+++..+-. +..+ ...++..+...|.+.|++++|.+.+++. ...| ..
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 566666664 4699999999998875322 1112 1456788899999999999999999886 1111 11
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc-----hHHHHHhHhhh--cCChhHHHHHHHH
Q 005000 518 IVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA-----VYVLLCNIYAA--CNRWDNFRELRQM 576 (720)
Q Consensus 518 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~--~g~~~~a~~~~~~ 576 (720)
..+...+..+...|+++.|...++++.+++|..+. ....|+.+|.. .+++++|...++.
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~ 265 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 22344555677889999999999999999986332 33445556554 3568888877654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.35 E-value=6.3e-06 Score=79.72 Aligned_cols=173 Identities=8% Similarity=-0.057 Sum_probs=130.2
Q ss_pred CCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCCh-HHHHHHHHHHHhcCChhhHHHH
Q 005000 397 GDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRA----SIIPDE-VTYVGVLSACTHTGMVDEGREY 471 (720)
Q Consensus 397 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~ 471 (720)
+++++|..+|.+. ...|...|++++|++.|.+..+. +-.|+. .+|..+..+|...|++++|.+.
T Consensus 31 ~~~~~Aa~~y~~a-----------a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~ 99 (290)
T d1qqea_ 31 YKFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDS 99 (290)
T ss_dssp HHHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHH-----------HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 3567787776654 67788999999999999998762 222222 5788889999999999999999
Q ss_pred HHHHHHHcCCCc----cHHHHHHHHHHHHh-cCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHH
Q 005000 472 FADMTIQHGIEP----NEAHYGCMVDLLGR-AGHLNEALEVIKNM----PMKPN----SIVWGALLGACRVHRDAEMAEM 538 (720)
Q Consensus 472 ~~~m~~~~~~~p----~~~~~~~li~~~~~-~g~~~eA~~~~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~ 538 (720)
++...+-..-.. ....+..+...|.. .|++++|.+.+++. +...+ ..++..+...+...|++++|..
T Consensus 100 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~ 179 (290)
T d1qqea_ 100 LENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASD 179 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHH
Confidence 997753221111 24556667777755 69999999999876 11111 3457888899999999999999
Q ss_pred HHHHHHhcCCCCcc-------hHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 539 AAKQILELDPDNEA-------VYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 539 ~~~~~~~~~p~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
.++++....|.+.. .+...+.++...|+++.|.+.++...+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 180 IYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp HHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999998877643 3456677788899999999998877654
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=3e-06 Score=74.60 Aligned_cols=134 Identities=14% Similarity=0.035 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 005000 416 TWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLL 495 (720)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 495 (720)
.+......+.+.|++++|+..|++.+..- |.. .+..+.-......+ ....|+.+..+|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~--~~~------------~~~~~~~~~~~~~~--------~~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWL--EYE------------SSFSNEEAQKAQAL--------RLASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTC------------CCCCSHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hhc------------cccchHHHhhhchh--------HHHHHHHHHHHH
Confidence 44555667777888888888888776531 110 00001111111111 124577788899
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHH
Q 005000 496 GRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFR 571 (720)
Q Consensus 496 ~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 571 (720)
.+.|++++|+..+++. .+.| ++..|..+..++...|++++|...++++++++|+|+.+...+..+..+.+...+..
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e 150 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 150 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887 5566 78899999999999999999999999999999999999999999987777665543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=6.9e-06 Score=72.15 Aligned_cols=62 Identities=21% Similarity=0.057 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 518 IVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 518 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
.+|+.+..+|.+.|++++|+..++++++++|+++.++..++.+|...|++++|...++...+
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 45677888899999999999999999999999999999999999999999999999999876
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=2e-06 Score=70.58 Aligned_cols=108 Identities=13% Similarity=-0.014 Sum_probs=83.2
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH---HHHHHHHHhC-CCCCCH---HHHHHHHH
Q 005000 453 VGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHL---NEALEVIKNM-PMKPNS---IVWGALLG 525 (720)
Q Consensus 453 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~---~eA~~~~~~~-~~~p~~---~~~~~ll~ 525 (720)
..+++.+...+++++|.+.|+..... -+.++.++..+..+|.+.++. ++|+++++++ ...|+. .+|..|..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 34677788888899999999888632 134667788888888775554 4688888886 444533 37888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhh
Q 005000 526 ACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYA 562 (720)
Q Consensus 526 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 562 (720)
+|...|++++|+..++++++++|++..+...+..+..
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~ 117 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK 117 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999877766655543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.25 E-value=1e-05 Score=69.62 Aligned_cols=83 Identities=16% Similarity=0.043 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCCCccCCcccEEEECCEE
Q 005000 518 IVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVV 597 (720)
Q Consensus 518 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~ 597 (720)
.+|..+..++.+.|++++|+..++++++++|++..+|..++.+|...|++++|...++...+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l----------------- 130 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL----------------- 130 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh-----------------
Confidence 466778888999999999999999999999999999999999999999999999999887652
Q ss_pred EEEEeCCCCCcCcHHHHHHHHHHHHHHHh
Q 005000 598 HEFVAGDKSHPQTKEIYLKLDEMTSDLKF 626 (720)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 626 (720)
.|...++...+..+..++++
T Consensus 131 ---------~P~n~~~~~~l~~~~~kl~~ 150 (153)
T d2fbna1 131 ---------NPNNLDIRNSYELCVNKLKE 150 (153)
T ss_dssp ---------STTCHHHHHHHHHHHHHHHH
T ss_pred ---------CCCCHHHHHHHHHHHHHHHH
Confidence 35667777777766666554
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=1.7e-06 Score=71.05 Aligned_cols=112 Identities=9% Similarity=-0.003 Sum_probs=90.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCC--cchHHHHHhHh
Q 005000 489 GCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHR---DAEMAEMAAKQILELDPDN--EAVYVLLCNIY 561 (720)
Q Consensus 489 ~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~ 561 (720)
..++..+...+++++|++.|++. ...| ++.++..+..++.+.+ ++++|+..++++++.+|.+ ..++..|+.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 45778888999999999999997 4455 6788888998887644 5567999999999998765 34789999999
Q ss_pred hhcCChhHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHHh
Q 005000 562 AACNRWDNFRELRQMILDRGIKKTPGCSMIEMNGVVHEFVAGDKSHPQTKEIYLKLDEMTSDLKF 626 (720)
Q Consensus 562 ~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 626 (720)
.+.|++++|.+.++++.+. .|...++..+...+..++++
T Consensus 83 ~~~g~~~~A~~~~~~aL~~--------------------------~P~~~~A~~l~~~I~~~~~k 121 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQT--------------------------EPQNNQAKELERLIDKAMKK 121 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHh--------------------------CcCCHHHHHHHHHHHHHHcC
Confidence 9999999999999999863 35566777777666666654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.15 E-value=1.7e-05 Score=69.36 Aligned_cols=94 Identities=14% Similarity=0.085 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhh
Q 005000 486 AHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAA 563 (720)
Q Consensus 486 ~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 563 (720)
..|..+..+|.+.|++++|+..+++. ...| +..+|..+..++...|++++|...++++++++|+++.+...+..+...
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45667888899999999999999987 4445 788999999999999999999999999999999999999999998887
Q ss_pred cCChhH-HHHHHHHHHh
Q 005000 564 CNRWDN-FRELRQMILD 579 (720)
Q Consensus 564 ~g~~~~-a~~~~~~m~~ 579 (720)
.+...+ ..+++..|-+
T Consensus 145 ~~~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 145 AKEHNERDRRTYANMFK 161 (168)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHh
Confidence 776543 4455555543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.14 E-value=9.4e-06 Score=71.23 Aligned_cols=64 Identities=13% Similarity=-0.008 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 516 NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 516 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
....|..+..++.+.|++++|+..+.++++++|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 4456777778888889999999999999999999888999999999999999999988888876
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.12 E-value=0.00035 Score=65.79 Aligned_cols=228 Identities=11% Similarity=-0.018 Sum_probs=132.1
Q ss_pred CccchHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhh
Q 005000 312 DYVLWTAMIDGYLRVNRFREALTLFREMQTSNIRPDEFTIVSILTACANLGALELGEWVKTYIDKNKVKNDIFVGNALID 391 (720)
Q Consensus 312 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 391 (720)
|+..+..+...+.+.+++++|++.|++..+.| |......+-..+... .++
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G---------------~~~------------ 50 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQG---------------QGV------------ 50 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT---------------SSS------------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC---------------CCc------------
Confidence 34556677777778888888888888887766 233222222222210 000
Q ss_pred hhhhcCCHHHHHHHHHhccCC-CHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHH----hc
Q 005000 392 MYCKCGDVEKAQRVFREMLRK-DKFTWTAMIVGLAI----NGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACT----HT 462 (720)
Q Consensus 392 ~y~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~----~~ 462 (720)
..+...|...+.....+ +...+..+...+.. .++.+.|...+++....|..+ ....+...+. ..
T Consensus 51 ----~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~---a~~~l~~~~~~~~~~~ 123 (265)
T d1ouva_ 51 ----EKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAE---GCASLGGIYHDGKVVT 123 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHCSSSC
T ss_pred ----chhHHHHHHhhcccccccccchhhccccccccccccchhhHHHHHHHhhhhhhhhhh---HHHhhcccccCCCccc
Confidence 22344444444433322 33333333333332 345566666666666654221 1111222222 23
Q ss_pred CChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHH
Q 005000 463 GMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGR----AGHLNEALEVIKNMPMKPNSIVWGALLGACRV----HRDAE 534 (720)
Q Consensus 463 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~ 534 (720)
.....+...+.... . ..+...+..|...|.. ..+...+...++...-..+..++..|...+.. .++++
T Consensus 124 ~~~~~a~~~~~~~~-~---~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~ 199 (265)
T d1ouva_ 124 RDFKKAVEYFTKAC-D---LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFK 199 (265)
T ss_dssp CCHHHHHHHHHHHH-H---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHH
T ss_pred chhHHHHHHhhhhh-c---ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchh
Confidence 34455555555443 1 2445566666666664 44566677777665333466666666666654 56899
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHhHhhh----cCChhHHHHHHHHHHhCCC
Q 005000 535 MAEMAAKQILELDPDNEAVYVLLCNIYAA----CNRWDNFRELRQMILDRGI 582 (720)
Q Consensus 535 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 582 (720)
.|+..++++.+.+ ++..+..|+.+|.. ..++++|.+.+++..+.|.
T Consensus 200 ~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 200 EALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 9999999998875 46788899999986 3489999999999987764
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.11 E-value=1.1e-05 Score=70.71 Aligned_cols=133 Identities=10% Similarity=0.092 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCc-cHHHHHHHHHH
Q 005000 416 TWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEP-NEAHYGCMVDL 494 (720)
Q Consensus 416 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~ 494 (720)
.+......+...|++++|++.|++.+.. +..........+. ..+.| ....|..+..+
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~----------~~~~~~~~~~~~nla~~ 86 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADG----------AKLQPVALSCVLNIGAC 86 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHH----------GGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHH----------HHhChhhHHHHHHHHHH
Confidence 3445566677888888888888876541 0000000111100 11122 45567788899
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHH
Q 005000 495 LGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNF 570 (720)
Q Consensus 495 ~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 570 (720)
|.+.|++++|+..++++ .+.| ++..|..+..++...|++++|+..++++++++|++..+...+..++.+.....++
T Consensus 87 ~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~ 164 (169)
T d1ihga1 87 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 164 (169)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987 6667 6889999999999999999999999999999999999988888887665554443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=5.7e-06 Score=68.74 Aligned_cols=92 Identities=12% Similarity=0.115 Sum_probs=77.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc-------hHHHHH
Q 005000 488 YGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEA-------VYVLLC 558 (720)
Q Consensus 488 ~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l~ 558 (720)
+..+...|.+.|++++|++.|++. .+.| +..+|..+..+|...|++++|+..++++++++|+++. +|..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 445777888999999999999887 4455 6888999999999999999999999999999988765 555677
Q ss_pred hHhhhcCChhHHHHHHHHHHh
Q 005000 559 NIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 559 ~~~~~~g~~~~a~~~~~~m~~ 579 (720)
.++...+++++|.+.+++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 788888999999999887654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.06 E-value=3.8e-05 Score=67.11 Aligned_cols=62 Identities=16% Similarity=0.074 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 518 IVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 518 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
.+|+.+..++.+.|++++|+..++++++++|++..+|..++.+|...|++++|.+.++.+.+
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35666778889999999999999999999999999999999999999999999999999876
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.04 E-value=1.9e-05 Score=67.88 Aligned_cols=128 Identities=9% Similarity=-0.038 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 005000 415 FTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDL 494 (720)
Q Consensus 415 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 494 (720)
..+......+.+.|++.+|+..|++.+..- |.. ...+... ...... .....+|..+...
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~-------------~~~~~~~-~~~~~~-----~~~~~~~~Nla~~ 76 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHT-------------EEWDDQI-LLDKKK-----NIEISCNLNLATC 76 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTC-------------TTCCCHH-HHHHHH-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cch-------------hhhhhHH-HHHhhh-----hHHHHHHhhHHHH
Confidence 456667778888999999999998887631 110 0000000 000000 1123567789999
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhh
Q 005000 495 LGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAA 563 (720)
Q Consensus 495 ~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 563 (720)
|.+.|++++|++.+++. .+.| +..+|..+..++...|++++|...++++++++|+|+.+...+..+..+
T Consensus 77 ~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k 147 (153)
T d2fbna1 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 147 (153)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999999987 5566 788999999999999999999999999999999998887777665443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=3.7e-06 Score=88.23 Aligned_cols=206 Identities=9% Similarity=-0.015 Sum_probs=104.9
Q ss_pred HHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCCCHHHHHH-HHHHHHHcCChHHHHHHHHHHHHCCC
Q 005000 367 GEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTA-MIVGLAINGHGDKSLDMFSQMLRASI 445 (720)
Q Consensus 367 a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~ 445 (720)
|.+.++++.+.. +.....+..+..+|...|++++| |+++...|+..-.. -+....-...+..+++.+++..+...
T Consensus 5 A~q~~~qA~~l~-p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw~~~y~~~ie~~r~~~k~~~ 80 (497)
T d1ya0a1 5 SAQYLRQAEVLK-ADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNRA 80 (497)
T ss_dssp HHHHHHHHHHHH-GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHHHHHTHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHcC-CCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHHHHHHHHHHHHHHHhccccc
Confidence 445555554421 12234455677777777777766 55554333221100 01111111224566777777766544
Q ss_pred CCChHHHHHHHHHH--HhcCChhhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-HHHHH
Q 005000 446 IPDEVTYVGVLSAC--THTGMVDEGREYFADMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPN-SIVWG 521 (720)
Q Consensus 446 ~p~~~t~~~ll~a~--~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~-~~~~~ 521 (720)
.|+..-....+..+ ...+.++.++..+... +++.| +...+..+...+.+.|+.++|...+++. ++++ ..++.
T Consensus 81 ~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~---~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a-l~~~~~~~~~ 156 (497)
T d1ya0a1 81 NPNRSEVQANLSLFLEAASGFYTQLLQELCTV---FNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSS-CSYICQHCLV 156 (497)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC----------------------------------CCHH-HHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHH-hCCCHHHHHH
Confidence 44443322222222 2234455555544432 34444 4556777788888888888888766554 1122 34677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 522 ALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 522 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
.+...++..|++++|+..++++++++|++..+|..|+.+|...|++.+|...+.+....
T Consensus 157 ~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~ 215 (497)
T d1ya0a1 157 HLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215 (497)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 78888899999999999999999999999999999999999999999999888877653
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.69 E-value=0.025 Score=54.10 Aligned_cols=136 Identities=13% Similarity=0.037 Sum_probs=60.3
Q ss_pred CCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHH
Q 005000 113 PDNYTFPFLLKGFTRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYK 192 (720)
Q Consensus 113 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~ 192 (720)
||..-...+..-|.+.|.++.|..++..+. -+..++..|.+.+++..|.+++... .+..+|..+...+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~--~~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACV 80 (336)
T ss_dssp C----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc--CCHHHHHHHHHHHH
Confidence 455555555666666666666666665332 2445556666666666666555433 23445655555555
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC
Q 005000 193 RVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDVGKRAHRYVKECKIVPNLILENALTDMYAACG 265 (720)
Q Consensus 193 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 265 (720)
+.....-| .+...+...+......++..|-..|.++....+++..... -..+...++-++..|++.+
T Consensus 81 ~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 81 DGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC
T ss_pred hCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC
Confidence 55444322 1222223334444455555555555555555555544322 1234445555555555543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.65 E-value=0.0046 Score=57.67 Aligned_cols=143 Identities=10% Similarity=-0.081 Sum_probs=69.3
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhh----cCCHH
Q 005000 327 NRFREALTLFREMQTSNIRPDEFTIVSILTA--CANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCK----CGDVE 400 (720)
Q Consensus 327 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~ 400 (720)
.+.+.|...++.....|.......+. .... .........+...+......+ +...+..|...|.. ..+..
T Consensus 88 ~~~~~a~~~~~~a~~~g~~~a~~~l~-~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L~~~~~~~~~~~~~~~ 163 (265)
T d1ouva_ 88 QNTNKALQYYSKACDLKYAEGCASLG-GIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLK 163 (265)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred hhhHHHHHHHhhhhhhhhhhHHHhhc-ccccCCCcccchhHHHHHHhhhhhccc---ccchhhhhhhhhccCCCcccccc
Confidence 45566666666666655221111111 1111 112234444455544444422 33444445555543 34455
Q ss_pred HHHHHHHhccCC-CHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh----cCChhhHHHH
Q 005000 401 KAQRVFREMLRK-DKFTWTAMIVGLAI----NGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTH----TGMVDEGREY 471 (720)
Q Consensus 401 ~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~ 471 (720)
.+...++...+. +..+...+...|.. ..+.++|+..|++..+.| +...+..|...+.+ ..+.++|.++
T Consensus 164 ~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~ 240 (265)
T d1ouva_ 164 KALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIEN 240 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHH
T ss_pred cchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHH
Confidence 566655555433 55555555555544 345666777776666655 23334444444433 2356666666
Q ss_pred HHHHH
Q 005000 472 FADMT 476 (720)
Q Consensus 472 ~~~m~ 476 (720)
|++..
T Consensus 241 ~~kAa 245 (265)
T d1ouva_ 241 FKKGC 245 (265)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.63 E-value=0.00015 Score=58.17 Aligned_cols=84 Identities=14% Similarity=0.115 Sum_probs=44.9
Q ss_pred HHHHhcCChhhHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 005000 457 SACTHTGMVDEGREYFADMTIQHGIEP-NEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRVHRDA 533 (720)
Q Consensus 457 ~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 533 (720)
..+.+.|++++|...|++..+. .| +...|..+..+|.+.|++++|+..+++. .+.| +..+|..+...+...|+.
T Consensus 24 ~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 24 LSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHhhhccc---ccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence 3445555555555555555422 22 3455555555555555555555555554 3333 355555555666666666
Q ss_pred HHHHHHHHHH
Q 005000 534 EMAEMAAKQI 543 (720)
Q Consensus 534 ~~a~~~~~~~ 543 (720)
++|.+.+++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666665554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.63 E-value=1.8e-05 Score=67.16 Aligned_cols=85 Identities=15% Similarity=0.129 Sum_probs=61.3
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh----------cCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhh
Q 005000 495 LGRAGHLNEALEVIKNM-PMKP-NSIVWGALLGACRV----------HRDAEMAEMAAKQILELDPDNEAVYVLLCNIYA 562 (720)
Q Consensus 495 ~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~----------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 562 (720)
|.|.+.+++|++.|++. ...| ++.+|..+..++.. .+.+++|+..++++++++|+++.+|..++.+|.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence 34555566666666665 3344 45555555555542 345688999999999999999999999999998
Q ss_pred hcCC-----------hhHHHHHHHHHHh
Q 005000 563 ACNR-----------WDNFRELRQMILD 579 (720)
Q Consensus 563 ~~g~-----------~~~a~~~~~~m~~ 579 (720)
..|+ +++|.+.+++..+
T Consensus 87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 87 SFAFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HcccchhhHHHHHHhHHHhhhhhhcccc
Confidence 8764 5778888877765
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.59 E-value=0.00022 Score=62.57 Aligned_cols=115 Identities=9% Similarity=-0.039 Sum_probs=80.4
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 005000 453 VGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNMPMKPNSIVWGALLGACRVHRD 532 (720)
Q Consensus 453 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 532 (720)
..........|++++|.+.|..... +.+.... . .+...........-++.. ....+..+...+...|+
T Consensus 15 ~~~g~~~~~~g~~e~A~~~~~~AL~---l~rG~~l----~-~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~g~ 82 (179)
T d2ff4a2 15 KTAGVHAAAAGRFEQASRHLSAALR---EWRGPVL----D-DLRDFQFVEPFATALVED----KVLAHTAKAEAEIACGR 82 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT---TCCSSTT----G-GGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHh---hCccccc----c-cCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCC
Confidence 3344567788888888888888763 2221100 0 000000111111111111 24567888899999999
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 533 AEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 533 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
+++|...++++++.+|.+...|..++.+|.+.|++++|.+.|+.+..
T Consensus 83 ~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 83 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998854
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.59 E-value=0.015 Score=55.61 Aligned_cols=133 Identities=8% Similarity=0.069 Sum_probs=75.1
Q ss_pred CChhHhhHHhcccccccCChHHHHHHhccCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhHhCCCCCCcccHHHHHHHH
Q 005000 46 TNPTVQNKLVTFCCSEKGDMKYACKVFRKIPRPSVCLWNTMIKGYSRIDSHKNGVLIYLDMLKSDVRPDNYTFPFLLKGF 125 (720)
Q Consensus 46 ~~~~~~~~ll~~~y~~~g~~~~A~~~f~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 125 (720)
+|.+--....+. +-+.|.++.|..+|..+.. |..++..+.+.++++.|.+++... -+..+|..+..+|
T Consensus 12 ~n~~d~~~i~~~-c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l 79 (336)
T d1b89a_ 12 PNNAHIQQVGDR-CYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFAC 79 (336)
T ss_dssp C-----------------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHH
T ss_pred CCcCCHHHHHHH-HHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHH
Confidence 344444445566 5677888888888876554 777888888888888887777644 2445777777777
Q ss_pred hccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCCeeeHHHHHHHHHhCC
Q 005000 126 TRDIAVEFGKELHCHVLKFGFDSSVFVQNALISTYCLCGEVDMARGIFDVSY---KDDVVTWNAMFSGYKRVK 195 (720)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g 195 (720)
.+......+ .+.......++.-...++..|-..|.+++...+++... ..+...++.++..|++.+
T Consensus 80 ~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 80 VDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC
T ss_pred HhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC
Confidence 766554432 22222233444455667777777777777777776432 234455667777776653
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.58 E-value=4.6e-05 Score=64.52 Aligned_cols=124 Identities=10% Similarity=0.031 Sum_probs=71.1
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHH
Q 005000 424 LAINGHGDKSLDMFSQMLRASIIPDE-VTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLN 502 (720)
Q Consensus 424 ~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 502 (720)
|-+.+.+++|++.|++.++. .|+. .++..+..++...+++..+.+ ..+.++
T Consensus 7 ~~r~~~fe~A~~~~e~al~~--~P~~~~~~~~~g~~l~~~~~~~~~~e--------------------------~~~~~~ 58 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISD--------------------------AKQMIQ 58 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHH--------------------------HHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHhhhhhhhhH--------------------------HHHHHH
Confidence 34455566666666666664 3333 345555555543333222111 112334
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhH
Q 005000 503 EALEVIKNM-PMKP-NSIVWGALLGACRVHR-----------DAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDN 569 (720)
Q Consensus 503 eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g-----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 569 (720)
+|++.|++. .+.| +..+|..+..++...| ++++|...++++++++|++...+..|... ..
T Consensus 59 ~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~k 131 (145)
T d1zu2a1 59 EAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AK 131 (145)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HT
T ss_pred HHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------HH
Confidence 555555554 3444 4556666665554433 46889999999999999997776666655 45
Q ss_pred HHHHHHHHHhCCC
Q 005000 570 FRELRQMILDRGI 582 (720)
Q Consensus 570 a~~~~~~m~~~~~ 582 (720)
|.+++.+..+.|+
T Consensus 132 a~~~~~e~~k~~~ 144 (145)
T d1zu2a1 132 APQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHhc
Confidence 5556666555554
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.54 E-value=0.00016 Score=61.98 Aligned_cols=88 Identities=14% Similarity=-0.003 Sum_probs=63.6
Q ss_pred HHHHhcCCHHHHHHHHHhC----CCCC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---------
Q 005000 493 DLLGRAGHLNEALEVIKNM----PMKP----------NSIVWGALLGACRVHRDAEMAEMAAKQILELDPD--------- 549 (720)
Q Consensus 493 ~~~~~~g~~~eA~~~~~~~----~~~p----------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--------- 549 (720)
..+.+.|++++|++.|++. +.-| ....|+.+..++...|++++|...+++++++.|.
T Consensus 17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~ 96 (156)
T d2hr2a1 17 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG 96 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccccccc
Confidence 3445556666666666554 1112 1356788888888999999999888888876432
Q ss_pred --CcchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 550 --NEAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 550 --~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
...++..++.+|...|++++|.+.+++..+.
T Consensus 97 ~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 97 KLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1236788999999999999999999998753
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.52 E-value=0.00019 Score=55.41 Aligned_cols=73 Identities=16% Similarity=0.053 Sum_probs=55.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC----C----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 005000 488 YGCMVDLLGRAGHLNEALEVIKNM----P----MKPN-SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLC 558 (720)
Q Consensus 488 ~~~li~~~~~~g~~~eA~~~~~~~----~----~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 558 (720)
+-.+...+.+.|++++|.+.|++. + ..++ ..++..|..++.+.|++++|+..++++++++|+++.++..+.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~ 87 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 334566666777777766666654 1 1223 567889999999999999999999999999999998888775
Q ss_pred hH
Q 005000 559 NI 560 (720)
Q Consensus 559 ~~ 560 (720)
..
T Consensus 88 ~~ 89 (95)
T d1tjca_ 88 YF 89 (95)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.40 E-value=0.0011 Score=54.34 Aligned_cols=57 Identities=9% Similarity=0.009 Sum_probs=32.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 005000 419 AMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMT 476 (720)
Q Consensus 419 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 476 (720)
.+...+.+.|++++|+..|.+.++.. +.+...+..+..++...|++++|.+.++.+.
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 65 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHH
Confidence 34455556666666666666666542 1234455555566666666666666666554
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.24 E-value=0.00071 Score=52.01 Aligned_cols=64 Identities=16% Similarity=-0.028 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------cchHHHHHhHhhhcCChhHHHHHHHHHHhC
Q 005000 517 SIVWGALLGACRVHRDAEMAEMAAKQILELDPDN-------EAVYVLLCNIYAACNRWDNFRELRQMILDR 580 (720)
Q Consensus 517 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 580 (720)
...+-.+...+.+.|+++.|+..+++++++.|.+ ..++..|+.+|.+.|++++|.+.++++.+.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 3445578888999999999999999999876543 357889999999999999999999998763
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.20 E-value=0.00012 Score=76.18 Aligned_cols=39 Identities=10% Similarity=0.081 Sum_probs=22.9
Q ss_pred HHHHHHhhCCC---CCccchHHHHHHHHhcCChhHHHHHHHHHHH
Q 005000 300 MARQYFDQMPE---RDYVLWTAMIDGYLRVNRFREALTLFREMQT 341 (720)
Q Consensus 300 ~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 341 (720)
+|.+.|++... ....+|..+...|...|++++| |++++.
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~ 45 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLV 45 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHH
Confidence 45555555432 2345666677777777777765 555544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.19 E-value=0.0016 Score=55.49 Aligned_cols=65 Identities=12% Similarity=0.017 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 005000 486 AHYGCMVDLLGRAGHLNEALEVIKNM--------PMKPN-----SIVWGALLGACRVHRDAEMAEMAAKQILELDPDN 550 (720)
Q Consensus 486 ~~~~~li~~~~~~g~~~eA~~~~~~~--------~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 550 (720)
..|+.+..+|...|++++|.+.+++. ...++ ...+..+..++...|++++|...+++++++.|+.
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 34555556666666666665555543 12222 2256778889999999999999999999987654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.93 E-value=0.0013 Score=61.28 Aligned_cols=126 Identities=14% Similarity=0.072 Sum_probs=82.5
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCcc-HHHHHHHHHHHHhcCCHHH
Q 005000 425 AINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPN-EAHYGCMVDLLGRAGHLNE 503 (720)
Q Consensus 425 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~e 503 (720)
.+.|++++|+..+++.++.. +-|...+..+...++..|++++|.+.++...+ +.|+ ...+..+..++...+..++
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~---l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHhccccHH
Confidence 35688888888888888752 22446777788888888888888888887763 3454 3444455555555555555
Q ss_pred HHHHHHhC--CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchH
Q 005000 504 ALEVIKNM--PMKPN-SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVY 554 (720)
Q Consensus 504 A~~~~~~~--~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 554 (720)
+..-.... ...|+ ...+......+...|+.++|...++++.+..|..+..+
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 136 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 44332221 12232 33344445667888999999999999999988876544
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.90 E-value=0.0089 Score=51.79 Aligned_cols=122 Identities=11% Similarity=0.051 Sum_probs=80.5
Q ss_pred HHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHHhhhhhhcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHH
Q 005000 356 TACANLGALELGEWVKTYIDKNKVKNDIFVGNALIDMYCKCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLD 435 (720)
Q Consensus 356 ~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 435 (720)
......|+++.|.+.+..++... +... +.+ +. .+. -+...-..+.......+..+...+...|++++|+.
T Consensus 19 ~~~~~~g~~e~A~~~~~~AL~l~--rG~~----l~~-~~-~~~--w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~ 88 (179)
T d2ff4a2 19 VHAAAAGRFEQASRHLSAALREW--RGPV----LDD-LR-DFQ--FVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA 88 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC--CSST----TGG-GT-TST--THHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC--cccc----ccc-Cc-chH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHH
Confidence 45567788888888888877642 1110 000 00 011 11111112222235577888889999999999999
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHH----HcCCCccHHHH
Q 005000 436 MFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTI----QHGIEPNEAHY 488 (720)
Q Consensus 436 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~~ 488 (720)
.+++++... +-+...|..++.++...|+.++|.+.|+++.. +.|+.|...+-
T Consensus 89 ~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~ 144 (179)
T d2ff4a2 89 ELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 144 (179)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence 999998853 23557888999999999999999999988742 46888887653
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.79 E-value=0.00037 Score=65.22 Aligned_cols=121 Identities=12% Similarity=0.098 Sum_probs=87.9
Q ss_pred HHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 005000 459 CTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEALEVIKNM-PMKPN-SIVWGALLGACRVHRDAEMA 536 (720)
Q Consensus 459 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a 536 (720)
....|++++|+..+++..+ --+.+...+..+..+|++.|++++|.+.++.. ...|+ ...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 3467999999999999873 23457899999999999999999999999998 56674 55666666665544444433
Q ss_pred HHHHHHHHh-cCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCC
Q 005000 537 EMAAKQILE-LDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRG 581 (720)
Q Consensus 537 ~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 581 (720)
.....+... .+|++...+...+.++...|++++|.+.++.+.+..
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 222222111 245555666777888999999999999999887643
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.97 E-value=0.086 Score=41.40 Aligned_cols=47 Identities=4% Similarity=0.020 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhcCCCCc-chHHHHHhHhhhcCChhHHHHHHHHHHh
Q 005000 533 AEMAEMAAKQILELDPDNE-AVYVLLCNIYAACNRWDNFRELRQMILD 579 (720)
Q Consensus 533 ~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 579 (720)
.++|+.+++++++.+|.+. ..++.|+-+|.+.|++++|.+.++.+.+
T Consensus 54 ~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 54 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 3455555555555555432 3445555555555555555555555544
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.55 E-value=0.73 Score=35.56 Aligned_cols=140 Identities=10% Similarity=0.070 Sum_probs=87.9
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 005000 425 AINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEA 504 (720)
Q Consensus 425 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA 504 (720)
...|..++..++..+.... .+..-|+-++--....-+-+-..+.++.+-+-+.+ ..++++...
T Consensus 13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDl--------------s~C~Nlk~v 75 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSV 75 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHH
T ss_pred HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCc--------------hhhhcHHHH
Confidence 3455666666666665542 13333444443333444444444444444221221 234455554
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhhcCChhHHHHHHHHHHhCCCc
Q 005000 505 LEVIKNMPMKPNSIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYVLLCNIYAACNRWDNFRELRQMILDRGIK 583 (720)
Q Consensus 505 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 583 (720)
...+-.+. .+..-.+-.+....++|+-++-..++..+++.+..+|.....++++|.+.|...++-+++.+.-++|++
T Consensus 76 v~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 76 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 44444442 233445566778888999999899999988877778899999999999999999999999999998875
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.65 E-value=3.7 Score=40.35 Aligned_cols=115 Identities=12% Similarity=0.094 Sum_probs=58.9
Q ss_pred CChHHHHHHHHHHHHCC-CCCChHH-HH-HHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHHHH
Q 005000 428 GHGDKSLDMFSQMLRAS-IIPDEVT-YV-GVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVDLLGRAGHLNEA 504 (720)
Q Consensus 428 g~~~~A~~l~~~m~~~g-~~p~~~t-~~-~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA 504 (720)
.+.+.|..++....... ..++... .. .+.......+..+.+..++.... ..+ .+.....-.+....+.+++..+
T Consensus 228 ~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~-~~~--~~~~~~~w~~~~al~~~~~~~~ 304 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAI-MRS--QSTSLIERRVRMALGTGDRRGL 304 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHH-HTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhc-ccc--cchHHHHHHHHHHHHcCChHHH
Confidence 45667777776665532 2222111 11 11112223455566666665543 222 2333333344445566777777
Q ss_pred HHHHHhCCCCC-CHHHH-HHHHHHHHhcCCHHHHHHHHHHHHh
Q 005000 505 LEVIKNMPMKP-NSIVW-GALLGACRVHRDAEMAEMAAKQILE 545 (720)
Q Consensus 505 ~~~~~~~~~~p-~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~ 545 (720)
...++.|+..| ...-| .=+..+....|+.+.|...+..+..
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 77777775333 11222 2244566777777777777777654
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=93.04 E-value=0.36 Score=38.61 Aligned_cols=50 Identities=12% Similarity=-0.004 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHhHhhh----cCChhHHHHHHHHHHhCCC
Q 005000 531 RDAEMAEMAAKQILELDPDNEAVYVLLCNIYAA----CNRWDNFRELRQMILDRGI 582 (720)
Q Consensus 531 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 582 (720)
.|.++|.+.++++.+.. ++.+...|+.+|.. ..+.++|.+.+++..+.|.
T Consensus 73 ~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 73 KDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 35667777777766653 34566667777765 3467777777777766654
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=92.83 E-value=1 Score=35.70 Aligned_cols=45 Identities=9% Similarity=-0.034 Sum_probs=22.6
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh----cCChhhHHHHHHHHH
Q 005000 429 HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTH----TGMVDEGREYFADMT 476 (720)
Q Consensus 429 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~ 476 (720)
+.++|+++|++..+.| +......|...+.+ ..+.++|.++|+...
T Consensus 74 d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa 122 (133)
T d1klxa_ 74 DLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC 122 (133)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHH
Confidence 4556666666665554 22223333333333 345666666666654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.83 E-value=0.47 Score=37.01 Aligned_cols=71 Identities=11% Similarity=0.006 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHhC-CCCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 005000 485 EAHYGCMVDLLGRAG---HLNEALEVIKNM-PMKP-N-SIVWGALLGACRVHRDAEMAEMAAKQILELDPDNEAVYV 555 (720)
Q Consensus 485 ~~~~~~li~~~~~~g---~~~eA~~~~~~~-~~~p-~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 555 (720)
+.+--...-++.+.. +.++|+.++++. ...| + ...|..|.-+|.+.|++++|...++++++++|++..+..
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~ 111 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 111 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHH
Confidence 333333444444443 334566666555 2223 3 346677788899999999999999999999999865543
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=91.45 E-value=2.3 Score=32.70 Aligned_cols=84 Identities=14% Similarity=0.116 Sum_probs=49.6
Q ss_pred hcCCHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHH
Q 005000 395 KCGDVEKAQRVFREMLRKDKFTWTAMIVGLAINGHGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFAD 474 (720)
Q Consensus 395 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 474 (720)
+|+++......+-.+- .+....+..+..+.+.|.-++-.++++.+.+. -+|+......+..||.+.|...++.+++.+
T Consensus 68 ~C~Nlk~vv~C~~~~n-~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ 145 (161)
T d1wy6a1 68 KCQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIE 145 (161)
T ss_dssp GCSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 3444444444443332 23334455556667777777777777776553 366666667777777777777777777776
Q ss_pred HHHHcCC
Q 005000 475 MTIQHGI 481 (720)
Q Consensus 475 m~~~~~~ 481 (720)
+. +.|+
T Consensus 146 AC-e~G~ 151 (161)
T d1wy6a1 146 AC-KKGE 151 (161)
T ss_dssp HH-HTTC
T ss_pred HH-HHhH
Confidence 65 3444
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=83.01 E-value=22 Score=34.34 Aligned_cols=262 Identities=7% Similarity=-0.039 Sum_probs=135.1
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcCCCchH
Q 005000 155 ALISTYCLCGEVDMARGIFDVSYKDDVVTWNAMFSGYKRVKQFDETRKLFGEMERKGVLPTSVTIVLVLSACAKLKDLDV 234 (720)
Q Consensus 155 ~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 234 (720)
.-+..+.+.++.+.....+...+ .+...--....+..+.|+.++|...+...-..|.. ..+.
T Consensus 77 ~~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-----------------~p~~ 138 (450)
T d1qsaa1 77 RFVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-----------------QPNA 138 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-----------------CCTH
T ss_pred HHHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-----------------CchH
Confidence 34556677788877776665432 23333345667778889999998888776555421 1223
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcc
Q 005000 235 GKRAHRYVKECKIVPNLILENALTDMYAACGEMGFALEIFGNIKNKDVISWTAIVTGYINRGQVDMARQYFDQMPERDYV 314 (720)
Q Consensus 235 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~ 314 (720)
...++..+.+.|.. +...+-.-+......|+...|..+...+...........+........+.... .... .+..
T Consensus 139 c~~l~~~~~~~~~l-t~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~~~---~~~~-~~~~ 213 (450)
T d1qsaa1 139 CDKLFSVWRASGKQ-DPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFA---RTTG-ATDF 213 (450)
T ss_dssp HHHHHHHHHHTTCS-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHH---HHSC-CCHH
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHHHHH---hcCC-CChh
Confidence 33445555554433 34444455566667788888888888776555444455555444333333222 1111 2222
Q ss_pred chHHHHHHHHh--cCChhHHHHHHHHHHHCC-CCCCHHH-HHH-HHHHHhccCcHHHHHHHHHHHHHcCCCCChhHhhHH
Q 005000 315 LWTAMIDGYLR--VNRFREALTLFREMQTSN-IRPDEFT-IVS-ILTACANLGALELGEWVKTYIDKNKVKNDIFVGNAL 389 (720)
Q Consensus 315 ~~~~li~~~~~--~g~~~~A~~~~~~m~~~g-~~p~~~t-~~~-ll~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l 389 (720)
....+..++.+ ..+.+.|..++....... ..++... ... +.......+..+.+..........+ .+.......
T Consensus 214 ~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~ 291 (450)
T d1qsaa1 214 TRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERR 291 (450)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHH
T ss_pred hhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHH
Confidence 22222223222 246677777776665432 2221111 111 1111223344455555554444433 223333334
Q ss_pred hhhhhhcCCHHHHHHHHHhccCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005000 390 IDMYCKCGDVEKAQRVFREMLRK---DKFTWTAMIVGLAINGHGDKSLDMFSQML 441 (720)
Q Consensus 390 i~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 441 (720)
+......+++..+...|+.|... .....-=+..++...|+.++|...|....
T Consensus 292 ~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a 346 (450)
T d1qsaa1 292 VRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHh
Confidence 44455566777777777766432 12222334456666677777777776654
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=80.99 E-value=2.6 Score=30.75 Aligned_cols=63 Identities=11% Similarity=0.215 Sum_probs=48.8
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHHcCCCccHHHHHHHHH
Q 005000 429 HGDKSLDMFSQMLRASIIPDEVTYVGVLSACTHTGMVDEGREYFADMTIQHGIEPNEAHYGCMVD 493 (720)
Q Consensus 429 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 493 (720)
+.-+..+-+..+....+.|+.....+.+.||.+.+++..|.++|+..+.+.| ++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~--~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence 3445666667777777899999999999999999999999999998865443 44556766653
|