Citrus Sinensis ID: 005009
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 719 | 2.2.26 [Sep-21-2011] | |||||||
| B0F481 | 833 | Bifunctional dethiobiotin | yes | no | 0.924 | 0.798 | 0.697 | 0.0 | |
| Q6ZKV8 | 821 | Bifunctional dethiobiotin | yes | no | 0.934 | 0.818 | 0.578 | 0.0 | |
| P22805 | 455 | Adenosylmethionine-8-amin | yes | no | 0.428 | 0.676 | 0.269 | 1e-24 | |
| P57379 | 428 | Adenosylmethionine-8-amin | yes | no | 0.392 | 0.658 | 0.263 | 2e-23 | |
| Q9FCC2 | 428 | Adenosylmethionine-8-amin | yes | no | 0.342 | 0.574 | 0.283 | 7e-23 | |
| P0A4X6 | 437 | Adenosylmethionine-8-amin | yes | no | 0.332 | 0.546 | 0.304 | 3e-22 | |
| P0A4X7 | 437 | Adenosylmethionine-8-amin | yes | no | 0.332 | 0.546 | 0.304 | 3e-22 | |
| P44426 | 430 | Adenosylmethionine-8-amin | yes | no | 0.349 | 0.583 | 0.281 | 4e-22 | |
| Q2FVJ6 | 452 | Adenosylmethionine-8-amin | yes | no | 0.424 | 0.674 | 0.239 | 6e-22 | |
| E6SRG2 | 744 | Biotin biosynthesis bifun | yes | no | 0.393 | 0.380 | 0.262 | 1e-21 |
| >sp|B0F481|BIODA_ARATH Bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid aminotransferase, mitochondrial OS=Arabidopsis thaliana GN=BIO3-BIO1 PE=1 SV=1 | Back alignment and function desciption |
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Score = 945 bits (2442), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/687 (69%), Positives = 555/687 (80%), Gaps = 22/687 (3%)
Query: 30 PLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSD 89
P LPL+HPT+ IWSANTSLGKTLVS G+++SFLL SS+ K +YLKPIQTG+P DSD
Sbjct: 29 PFHLPLNHPTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKLLYLKPIQTGFPSDSD 88
Query: 90 SRFLFTKLPSLSLRRNFPSSLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNF 149
SRF+F+KL SLSLRR P S+ SNS+L SSL AAKS L + S M LNF
Sbjct: 89 SRFVFSKLDSLSLRRQIPISI--SNSVLHSSLPAAKS------LGLNVEVSESGMCSLNF 140
Query: 150 REENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGL 209
R+E ++G EL+CKTL+AWE A+SPHLAAERE+ V DS V++ + KCL++ +
Sbjct: 141 RDEKTVTG-----APELLCKTLYAWEAAISPHLAAERENA-TVEDSVVLQMIEKCLKEEM 194
Query: 210 ESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTIS 269
E +SE K ++LC+VETAGGVASPGPSG+LQCDLYRPFRLPGILVGDGRLGGISGTI+
Sbjct: 195 ECGVKSE--KSDLLCLVETAGGVASPGPSGTLQCDLYRPFRLPGILVGDGRLGGISGTIA 252
Query: 270 AYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDSSNDLMEWFDESH 329
AYESLKLRGYD+ AVVFEDHGLVNEVPL SYLRN+VPVLVLPP+P+D S+DL+EWF ES
Sbjct: 253 AYESLKLRGYDIAAVVFEDHGLVNEVPLTSYLRNKVPVLVLPPVPKDPSDDLIEWFVESD 312
Query: 330 NVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSV 389
VF +LK M+LA ER++RL M K AGE+FWWPFTQHKLV +E VTVIDSRCGENFS+
Sbjct: 313 GVFKALKETMVLANLERLERLNGMAKLAGEVFWWPFTQHKLVHQETVTVIDSRCGENFSI 372
Query: 390 YQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECA 449
Y+ N + QQFDACASWWTQGPD T Q ELAR+MGYTAARFGHVMFPENVYEPAL+CA
Sbjct: 373 YKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVMFPENVYEPALKCA 432
Query: 450 ELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKV 509
ELLL GVGKGWASR YFSDNGSTAIEIALKMAFRKF DH +F EK I +KV
Sbjct: 433 ELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDH----NFCEATEEEKHIVVKV 488
Query: 510 LALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLY 569
+AL+GSYHGDTLGAMEAQAPSPYTGFLQQPWY+GRGLFLDPPTVF+ N W +SLPE
Sbjct: 489 IALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFS 548
Query: 570 SKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVV 629
E+ TF SRDEIF + RD+S LA IYS+Y+S++L ++ G++ S +GALIIEPV+
Sbjct: 549 EIAPEYG--TFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVI 606
Query: 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGK 689
H AGGMHMVDPLFQR+LV EC+NRKIPVIFDEVFTGFWRLGVETT +LLGC PDIAC+ K
Sbjct: 607 HGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIACFAK 666
Query: 690 LLTGGVIPLAATLATNAVFDSFVGDSK 716
LLTGG++PLA TLAT+AVFDSF GDSK
Sbjct: 667 LLTGGMVPLAVTLATDAVFDSFSGDSK 693
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Catalyzes the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: 6EC: 2 |
| >sp|Q6ZKV8|BIODA_ORYSJ Bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid aminotransferase, mitochondrial OS=Oryza sativa subsp. japonica GN=BIO3-BIO1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 770 bits (1988), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/710 (57%), Positives = 501/710 (70%), Gaps = 38/710 (5%)
Query: 17 LLRLFHHSTFHPQPLD-------LPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSS 69
+LRL H+ H +PL+ P F ++ ANT +GKTLVSAGL +S L SP+ S
Sbjct: 1 MLRLLRHARRHSTSSSSSAAAAAVPLTSPAFAVFGANTGVGKTLVSAGLVASLLASPSPS 60
Query: 70 ANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSILFSSLFAAKSFLS 129
+ YLKP+QTG+P DSD+RF+F + P+L LRR L L+ + L A+ L
Sbjct: 61 PST-VAYLKPLQTGFPDDSDARFVFDRAPAL-LRR-----LRLAGGGASTRLVASNHTL- 112
Query: 130 SRDLPFQPQKFNSEMYD-LNFREENRIS--GEEDSSVSELVCKTLFAWEEAVSPHLAAER 186
F S D L R++ ++ GEE LVC+T++AW E VSPHLAAER
Sbjct: 113 ----------FPSPAVDPLPERQDTVVNYGGEEGVEEKALVCRTVYAWREPVSPHLAAER 162
Query: 187 ESGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLY 246
E G V D +V + + L + E G E+ ++ETAGGVASPGPSG+LQCDLY
Sbjct: 163 E-GMPVEDEEVRWLVDRWLAE--------EDGGGEVWKVLETAGGVASPGPSGTLQCDLY 213
Query: 247 RPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVP 306
R RLP +LVGDGRLGGIS T+SAYE+L LRGYDV +V+ ED GL N+ L+SYLR RVP
Sbjct: 214 RSSRLPAVLVGDGRLGGISSTLSAYETLLLRGYDVGSVILEDRGLSNDRFLLSYLRKRVP 273
Query: 307 VLVLPPLPQDSSNDLMEWFDESHNVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFT 366
V VLPP+P+D +DL +WF ES + F SLK+ + +S R+QRL M +++ L WWPFT
Sbjct: 274 VHVLPPIPEDPKDDLTDWFSESSSAFSSLKDSLQSFHSRRVQRLNSMQRKSKYLLWWPFT 333
Query: 367 QHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMG 426
QH LVP ++VTVIDSR GENFS Y+ K+K I QFDACASWWTQGPD+ LQIELARDMG
Sbjct: 334 QHDLVPVDSVTVIDSRFGENFSAYK-VKDKTIVPQFDACASWWTQGPDSNLQIELARDMG 392
Query: 427 YTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
Y AAR+GHVMFPENV+EPAL CAELLL GVGK WASR YFSDNGSTAIEIALKMAFRK++
Sbjct: 393 YAAARYGHVMFPENVHEPALRCAELLLGGVGKDWASRVYFSDNGSTAIEIALKMAFRKYA 452
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGL 546
DH ++VD +E + KVLAL GSYHGDTLGAMEAQAPS YT FLQQPWYSGRGL
Sbjct: 453 CDHGIIVDSEKDIRSEGSVHFKVLALNGSYHGDTLGAMEAQAPSAYTSFLQQPWYSGRGL 512
Query: 547 FLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQ 606
FLDPPTV++ N LSLP + + D F S E+F + RD+S A++Y SYISQ
Sbjct: 513 FLDPPTVYIKNKSANLSLPPSIMHDQLSSCDTCFSSLTEVFCKTRDTSSAANVYVSYISQ 572
Query: 607 NLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGF 666
L Q S I ALIIEPV+ AGGMH++DPLFQR+LVKEC+NRKIPVIFDEVFTGF
Sbjct: 573 QLSQYAMSNNSEHIAALIIEPVIQGAGGMHLIDPLFQRLLVKECKNRKIPVIFDEVFTGF 632
Query: 667 WRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK 716
WRLGVE+ ++LLGC PDI+CY KL+TGG++PLAATLAT +F++F DSK
Sbjct: 633 WRLGVESASELLGCFPDISCYAKLMTGGIVPLAATLATEPIFEAFRSDSK 682
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Catalyzes the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 6 EC: 2 |
| >sp|P22805|BIOA_LYSSH Adenosylmethionine-8-amino-7-oxononanoate aminotransferase OS=Lysinibacillus sphaericus GN=bioA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 115 bits (288), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 99/367 (26%), Positives = 155/367 (42%), Gaps = 59/367 (16%)
Query: 348 QRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACAS 407
Q L ++ ++ + W P +Q K EA I + GE +Y +Q +++ DA +S
Sbjct: 3 QVLTELQEKDLQHVWHPCSQMK--DYEAFPPIVIKKGEGVWLYDEQNQRYL----DAVSS 56
Query: 408 WWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFS 467
WW +++ + A H +F +EPA++ A+ L+ + + +F+
Sbjct: 57 WWV-NLFGHANPRISQALSEQAFTLEHTIFANFSHEPAIKLAQKLV-ALTPQSLQKVFFA 114
Query: 468 DNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQ 527
DNGS+AIE+ALKM+F+ T K + + LAL +YHG+TLGA+
Sbjct: 115 DNGSSAIEVALKMSFQYHM-------------QTGKTQKKRFLALTDAYHGETLGALSVG 161
Query: 528 APSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIF 587
Y Q P L + + D C F
Sbjct: 162 GVDLYNEVYQ---------------------------PLLLDTVRAQGPDCFRCP----F 190
Query: 588 YEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILV 647
DS I S++ L + I A+IIEP++ AA GM M ++ R L
Sbjct: 191 KHHPDSCHAQCI--SFVEDQLRMH-----HKEITAVIIEPLIQAAAGMKMYPAIYLRRLR 243
Query: 648 KECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAV 707
+ C + +I DE+ GF R G + PD C K LTGG +PL+ + TN V
Sbjct: 244 ELCTQYDVHLIADEIAVGFGRTGTLFACEQANISPDFMCLSKGLTGGYLPLSVVMTTNDV 303
Query: 708 FDSFVGD 714
+ +F D
Sbjct: 304 YQAFYDD 310
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Catalyzes the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor. Lysinibacillus sphaericus (taxid: 1421) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 6 EC: 2 |
| >sp|P57379|BIOA_BUCAI Adenosylmethionine-8-amino-7-oxononanoate aminotransferase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) GN=bioA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 93/353 (26%), Positives = 144/353 (40%), Gaps = 71/353 (20%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIE 420
W P++ P TVI ++ VY KN+ D +SWW +
Sbjct: 13 IWHPYSSMN-NPHPCYTVISAK-----GVYLKLKNR--KYMIDGMSSWWAAIHGYNHPV- 63
Query: 421 LARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKM 480
L + + + HVMF + PA+ L+ + + SD+GS AIE+A+KM
Sbjct: 64 LNKALKKQIRKMSHVMFGGITHPPAISLCRKLISLTPEKLDC-VFLSDSGSVAIEVAIKM 122
Query: 481 AFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPW 540
+ + LG+ L ++ YHGDT AM P Q +
Sbjct: 123 LIQYW--------QALGQKRKL------FLTIRNGYHGDTFSAMSVSDPK---NSFHQIY 165
Query: 541 YS--GRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598
++ + LF D P FY+ D+ D+ S
Sbjct: 166 HNLLPKHLFADAPV--------------------------------SSFYKNWDNEDILS 193
Query: 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVI 658
+ +++ K++G +I+EP+V GGM+ P++ + + C + IPVI
Sbjct: 194 F------KKIIEKNSFKIAG----VILEPIVQGVGGMNFYHPMYLKQIKILCNHYSIPVI 243
Query: 659 FDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
FDE+ TGF R G + VPDI C GK +TGG I LAATL + + D+
Sbjct: 244 FDEIATGFGRTGKMFAFEHANVVPDILCLGKSITGGTITLAATLTSRHIADTI 296
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Catalyzes the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor. Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) (taxid: 107806) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 6 EC: 2 |
| >sp|Q9FCC2|BIOA_STRCO Adenosylmethionine-8-amino-7-oxononanoate aminotransferase OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=bioA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 109 bits (273), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 90/318 (28%), Positives = 137/318 (43%), Gaps = 72/318 (22%)
Query: 399 GQQFDACASWWT--QGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGV 456
G+ D +SWW+ G + + AR+ R HVMF +EPA+ A+LL+
Sbjct: 50 GELVDGMSSWWSAIHGYNHPVLNAAAREQ---LERMSHVMFGGLTHEPAVRLAKLLVDMS 106
Query: 457 GKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSY 516
+G + +D+GS ++E+A+KM + + LG+ + +L +G Y
Sbjct: 107 PEG-LEHVFLADSGSVSVEVAVKMCLQYWRS--------LGRPGKHR-----LLTWRGGY 152
Query: 517 HGDTLGAMEAQAPSPYTGFLQQPWYSG---RGLFLDPPTVFMYNSKWILSLPEWLYSKIV 573
HGDT M P G + + W SG R +F D P
Sbjct: 153 HGDTWQPMSVCDPE---GGMHELW-SGVLPRQVFADAPPAE------------------- 189
Query: 574 EHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633
YEE + L S+ + +G + A+I+EPVV AG
Sbjct: 190 --------------YEETYADHLRSMVERH-------------AGELAAVIVEPVVQGAG 222
Query: 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693
GM P + R+L + C + ++FDE+ TGF R G A+ PD+ C GK LTG
Sbjct: 223 GMRFHSPAYLRVLREACDAHDVLLVFDEIATGFGRTGALFAAEHAAVTPDVMCVGKALTG 282
Query: 694 GVIPLAATLATNAVFDSF 711
G + +AATL T+ V +
Sbjct: 283 GYLTMAATLCTSRVAEGI 300
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Catalyzes the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor. Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) (taxid: 100226) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 6 EC: 2 |
| >sp|P0A4X6|BIOA_MYCTU Adenosylmethionine-8-amino-7-oxononanoate aminotransferase OS=Mycobacterium tuberculosis GN=bioA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 107 bits (268), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 96/315 (30%), Positives = 134/315 (42%), Gaps = 76/315 (24%)
Query: 400 QQFDACASWWTQ-------GPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELL 452
+ DA +SWWT D L +L R M HVMF +EPA A+LL
Sbjct: 56 EVLDAMSSWWTAIHGHGHPALDQALTTQL-RVMN-------HVMFGGLTHEPAARLAKLL 107
Query: 453 LQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512
+ G + +FSD+GS ++E+A KMA + + G+ K +++
Sbjct: 108 VDITPAGLDT-VFFSDSGSVSVEVAAKMALQYWR----------GRGLPGK---RRLMTW 153
Query: 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKI 572
+G YHGDT AM P+ G +S W L +++
Sbjct: 154 RGGYHGDTFLAMSIC--DPHGGM---------------------HSLWTDVLAAQVFAPQ 190
Query: 573 VEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632
V D YS+ L Q+ +G + A+++EPVV A
Sbjct: 191 VPR-------------------DYDPAYSAAFEAQLAQH-----AGELAAVVVEPVVQGA 226
Query: 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692
GGM DP + L C+ ++ +IFDE+ TGF R G AD G PDI C GK LT
Sbjct: 227 GGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALT 286
Query: 693 GGVIPLAATLATNAV 707
GG + LAATL T V
Sbjct: 287 GGYLSLAATLCTADV 301
|
Catalyzes the reversible transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor. Can also use sinefungin as substrate. Mycobacterium tuberculosis (taxid: 1773) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 6 EC: 2 |
| >sp|P0A4X7|BIOA_MYCBO Adenosylmethionine-8-amino-7-oxononanoate aminotransferase OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=bioA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 107 bits (268), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 96/315 (30%), Positives = 134/315 (42%), Gaps = 76/315 (24%)
Query: 400 QQFDACASWWTQ-------GPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELL 452
+ DA +SWWT D L +L R M HVMF +EPA A+LL
Sbjct: 56 EVLDAMSSWWTAIHGHGHPALDQALTTQL-RVMN-------HVMFGGLTHEPAARLAKLL 107
Query: 453 LQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512
+ G + +FSD+GS ++E+A KMA + + G+ K +++
Sbjct: 108 VDITPAGLDT-VFFSDSGSVSVEVAAKMALQYWR----------GRGLPGK---RRLMTW 153
Query: 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKI 572
+G YHGDT AM P+ G +S W L +++
Sbjct: 154 RGGYHGDTFLAMSIC--DPHGGM---------------------HSLWTDVLAAQVFAPQ 190
Query: 573 VEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632
V D YS+ L Q+ +G + A+++EPVV A
Sbjct: 191 VPR-------------------DYDPAYSAAFEAQLAQH-----AGELAAVVVEPVVQGA 226
Query: 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692
GGM DP + L C+ ++ +IFDE+ TGF R G AD G PDI C GK LT
Sbjct: 227 GGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALT 286
Query: 693 GGVIPLAATLATNAV 707
GG + LAATL T V
Sbjct: 287 GGYLSLAATLCTADV 301
|
Catalyzes the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor. Mycobacterium bovis (taxid: 1765) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 6 EC: 2 |
| >sp|P44426|BIOA_HAEIN Adenosylmethionine-8-amino-7-oxononanoate aminotransferase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=bioA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 107 bits (266), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 91/323 (28%), Positives = 138/323 (42%), Gaps = 72/323 (22%)
Query: 402 FDACASWWT-----QGP--DATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454
D +SWW P +A Q +LA+ H+MF ++PA+E A+LL+Q
Sbjct: 48 IDGMSSWWAALHGYNHPRLNAAAQNQLAK--------MSHIMFGGFTHDPAVELAQLLVQ 99
Query: 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKG 514
+ G + +F+D+GS A+E+A+KMA + + H K ++ K ++
Sbjct: 100 ILPNG-LDKIFFADSGSVAVEVAMKMAIQ---YQH-------AKGEVQR---QKFATIRS 145
Query: 515 SYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVE 574
YHGDT AM P+ TG +S + P +N W
Sbjct: 146 GYHGDTWNAMSVCDPT--TGMHHLFHHSLPVQYFLPQPNIPFNESW-------------- 189
Query: 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634
C+ + + +LL+ G + I ALI+EPVV AGG
Sbjct: 190 ----NDCAIEPL-------------------ADLLKKKGNE----IAALILEPVVQGAGG 222
Query: 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694
M+ P + C+ I +IFDE+ TGF R G A+ G PDI C GK LTGG
Sbjct: 223 MYFYSPTYLVKAQALCKQYGILLIFDEIATGFGRTGKLFAAEHAGISPDIMCIGKALTGG 282
Query: 695 VIPLAATLATNAVFDSFVGDSKK 717
+ L+A++ T + + K
Sbjct: 283 YLTLSASITTTEIAQTICSGEAK 305
|
Catalyzes the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor. Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 6 EC: 2 |
| >sp|Q2FVJ6|BIOA_STAA8 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase OS=Staphylococcus aureus (strain NCTC 8325) GN=bioA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 106 bits (265), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 87/364 (23%), Positives = 153/364 (42%), Gaps = 59/364 (16%)
Query: 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQG 412
+ ++ E W PFTQ + +E +I+ G+ +Y NK++ D AS W
Sbjct: 7 LKQKDSEYVWHPFTQMGVYSKEEAIIIEK--GKGSYLYDTNGNKYL----DGYASLWVNV 60
Query: 413 PDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGST 472
+ L + + + H + P++E AE L++ + + ++SD GS
Sbjct: 61 HGHNNKY-LNKVIKKQLNKIAHSTLLGSSNIPSIELAEKLIE-ITPSNLRKVFYSDTGSA 118
Query: 473 AIEIALKMAFRKF-SFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP 531
++EIA+KMA++ + + D E + K+ K + L YHGDT+GA+
Sbjct: 119 SVEIAIKMAYQYWKNIDRE---KYAKKN--------KFITLNHGYHGDTIGAVSVGGIKT 167
Query: 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEER 591
+ + + + ++ P+ + N Y E + ++I E
Sbjct: 168 FHKIFKDLIF--ENIQVESPSFYRSN-----------YDTENEMMTAILTNIEQILIERN 214
Query: 592 DSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQ 651
D I I+EP++ A G+ + F + + K C+
Sbjct: 215 DE--------------------------IAGFILEPLIQGATGLFVHPKGFLKEVEKLCK 248
Query: 652 NRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
+ +I DEV GF R G + PDI C GK +TGG +PLAATL + ++++F
Sbjct: 249 KYDVLLICDEVAVGFGRTGKMFACNHEDVQPDIMCLGKAITGGYLPLAATLTSKKIYNAF 308
Query: 712 VGDS 715
+ DS
Sbjct: 309 LSDS 312
|
Catalyzes the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor. Staphylococcus aureus (strain NCTC 8325) (taxid: 93061) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 6 EC: 2 |
| >sp|E6SRG2|BIOAB_BACT6 Biotin biosynthesis bifunctional protein BioAB OS=Bacteroides helcogenes (strain ATCC 35417 / DSM 20613 / JCM 6297 / P 36-108) GN=bioB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 99/377 (26%), Positives = 148/377 (39%), Gaps = 94/377 (24%)
Query: 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWW--------------TQGPDATLQIEL 421
+T I S+ E+ ++ ++ +F QFD W Q AT+ +E
Sbjct: 298 LTTIGSKVSEDKTLIEEAGYRFSDSQFDREHLWHPYTSTTDPLPVYKVEQAEGATITLES 357
Query: 422 ARDM------------GYT-----------AARFGHVMFPENVYEPALECAELLLQGVGK 458
+ + GY + HVMF +EPA+E +LLL V
Sbjct: 358 GQTLIEGMSSWWCAIHGYNNPVLNHAATEQIGKMSHVMFGGLTHEPAIELGKLLLPLVPP 417
Query: 459 GWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518
+ +++D+GS A+E+ALKMA + + GK +K + ++ YHG
Sbjct: 418 S-MQKIFYADSGSVAVEVALKMAVQYW----------YGKGKEKKN---NFVTIRSGYHG 463
Query: 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDI 578
DT AM P TG S + P Y+ W
Sbjct: 464 DTWNAM--SVCDPVTGMHSLFGSSLPIRYFAPQPRSRYDGDW------------------ 503
Query: 579 TFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638
+ DS +L +I + + + ALI+EP+V AGGM
Sbjct: 504 ----------DAGDSMELQNIIEQHHEE-------------LAALILEPIVQGAGGMWFY 540
Query: 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPL 698
P + R + C+ + +IFDE+ TGF R G + G PDI C GK LTGG + L
Sbjct: 541 HPQYLREAARLCKQYGLLLIFDEIATGFGRTGKLFAWEHAGTEPDIMCIGKALTGGYMTL 600
Query: 699 AATLATNAVFDSFVGDS 715
+A L TN V D+ S
Sbjct: 601 SAVLTTNEVADAISNHS 617
|
Catalyzes two activities which are involved in the biotine biosynthesis: the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism, and the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). Bacteroides helcogenes (strain ATCC 35417 / DSM 20613 / JCM 6297 / P 36-108) (taxid: 693979) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 6 EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 719 | ||||||
| 297796671 | 839 | mitochondrial bifunctional diaminopelarg | 0.938 | 0.804 | 0.689 | 0.0 | |
| 390980932 | 831 | Chain A, Structure Of Bifunctional Dapa | 0.936 | 0.809 | 0.690 | 0.0 | |
| 186532546 | 833 | adenosylmethionine-8-amino-7-oxononanoat | 0.924 | 0.798 | 0.697 | 0.0 | |
| 225446128 | 863 | PREDICTED: uncharacterized protein LOC10 | 0.926 | 0.771 | 0.691 | 0.0 | |
| 356550752 | 819 | PREDICTED: l-Lysine-8-amino-7-oxononanoa | 0.902 | 0.792 | 0.674 | 0.0 | |
| 390980930 | 831 | Chain A, Structure Of Selenomethionine S | 0.940 | 0.813 | 0.674 | 0.0 | |
| 449457131 | 852 | PREDICTED: bifunctional dethiobiotin syn | 0.973 | 0.821 | 0.646 | 0.0 | |
| 449510662 | 844 | PREDICTED: LOW QUALITY PROTEIN: bifuncti | 0.962 | 0.819 | 0.644 | 0.0 | |
| 357145329 | 825 | PREDICTED: adenosylmethionine-8-amino-7- | 0.938 | 0.818 | 0.588 | 0.0 | |
| 326517942 | 827 | predicted protein [Hordeum vulgare subsp | 0.916 | 0.796 | 0.596 | 0.0 |
| >gi|297796671|ref|XP_002866220.1| mitochondrial bifunctional diaminopelargonate synthetase [Arabidopsis lyrata subsp. lyrata] gi|297312055|gb|EFH42479.1| mitochondrial bifunctional diaminopelargonate synthetase [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 949 bits (2452), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/699 (68%), Positives = 565/699 (80%), Gaps = 24/699 (3%)
Query: 21 FHHSTFHPQP---LDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77
F+ + P P + LPL+HPT+ IWSANTSLGKTLVS G+++SFLL SS+ K +YL
Sbjct: 22 FNSTAVSPPPTHSIHLPLNHPTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKLLYL 81
Query: 78 KPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSILFSSLFAAKSFLSSRDLPFQP 137
KPIQTG+P DSDSRF+F+KL SLSLRR P L +SNS+L SSL AA+S L
Sbjct: 82 KPIQTGFPSDSDSRFVFSKLDSLSLRRQIP--LSISNSVLRSSLPAAES------LGLNV 133
Query: 138 QKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKV 197
+ ++ M +LNFREE ++G EL+CKTL+AWE A+SPHLAAERE+ + DS V
Sbjct: 134 EVSDTGMCNLNFREEKTVTG-----APELLCKTLYAWEAAISPHLAAERENA-TIEDSIV 187
Query: 198 IETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVG 257
+ + KCL++ +E S SE K ++LC+VETAGGVASPGPSG+LQCDLYRPFRLPGILVG
Sbjct: 188 LRMIEKCLKEEMECGSRSE--KSDLLCLVETAGGVASPGPSGTLQCDLYRPFRLPGILVG 245
Query: 258 DGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDS 317
DGRLGGISGTI+AYESLKLRGYD+ AVVFEDHGLVNEVPL SYLRN+VPVLVLPP+P+D
Sbjct: 246 DGRLGGISGTIAAYESLKLRGYDIAAVVFEDHGLVNEVPLTSYLRNKVPVLVLPPVPKDP 305
Query: 318 SNDLMEWFDESHNVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVT 377
S+DL+EWF ES+ VF +LK M+LAY R++RL M K+AG++FWWPFTQHKLV EE VT
Sbjct: 306 SDDLIEWFVESNGVFKALKETMVLAYLGRLERLNSMAKQAGKVFWWPFTQHKLVHEETVT 365
Query: 378 VIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF 437
VIDSRCGENFS+Y+ N + QQFDACASWWTQGPD T Q ELAR+MGYTAARFGHVMF
Sbjct: 366 VIDSRCGENFSIYKASDNSSLTQQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVMF 425
Query: 438 PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497
PENVYEPAL+CAELLL GVGKGWASR YFSDNGSTAIEIALKMAFRKF DH DF
Sbjct: 426 PENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDH----DFCE 481
Query: 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557
K EK I +KVLAL+GSYHGDTLGAMEAQAPSPYTGFLQQPWY+GRGLFLDPPTVF+ N
Sbjct: 482 KREEEKHIVVKVLALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSN 541
Query: 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVS 617
W + LPE +S+I + TF RDEIF E RD++ LA IYS+Y+S++L ++ G++ S
Sbjct: 542 GAWNIFLPE-CFSEIAPEECGTFSIRDEIFDESRDATTLARIYSAYVSEHLQEDSGVRQS 600
Query: 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
+GALIIEPV+H AGGMHMVDPLFQR+LV EC+NRKIPVIFDEVFTGFWRLGVETTA+L
Sbjct: 601 AHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTAEL 660
Query: 678 LGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK 716
L C PDIAC+ KLLTGG++PLA TLAT+AVFDSF GDSK
Sbjct: 661 LDCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSK 699
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|390980932|pdb|4A0G|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb Synthetase From Arabidopsis Thaliana In Its Apo Form. gi|390980933|pdb|4A0G|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb Synthetase From Arabidopsis Thaliana In Its Apo Form. gi|390980934|pdb|4A0G|C Chain C, Structure Of Bifunctional Dapa Aminotransferase-Dtb Synthetase From Arabidopsis Thaliana In Its Apo Form. gi|390980935|pdb|4A0G|D Chain D, Structure Of Bifunctional Dapa Aminotransferase-Dtb Synthetase From Arabidopsis Thaliana In Its Apo Form. gi|390980936|pdb|4A0H|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb Synthetase From Arabidopsis Thaliana Bound To 7-Keto 8-Amino Pelargonic Acid (Kapa) gi|390980937|pdb|4A0H|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb Synthetase From Arabidopsis Thaliana Bound To 7-Keto 8-Amino Pelargonic Acid (Kapa) gi|390980938|pdb|4A0R|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb Synthetase From Arabidopsis Thaliana Bound To Dethiobiotin (Dtb). gi|390980939|pdb|4A0R|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb Synthetase From Arabidopsis Thaliana Bound To Dethiobiotin (Dtb) | Back alignment and taxonomy information |
|---|
Score = 945 bits (2443), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/695 (69%), Positives = 557/695 (80%), Gaps = 22/695 (3%)
Query: 22 HHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQ 81
H + P LPL+HPT+ IWSANTSLGKTLVS G+++SFLL SS+ K +YLKPIQ
Sbjct: 19 HMKSTSVSPFHLPLNHPTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKLLYLKPIQ 78
Query: 82 TGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSILFSSLFAAKSFLSSRDLPFQPQKFN 141
TG+P DSDSRF+F+KL SLSLRR P S+ SNS+L SSL AAKS L +
Sbjct: 79 TGFPSDSDSRFVFSKLDSLSLRRQIPISI--SNSVLHSSLPAAKS------LGLNVEVSE 130
Query: 142 SEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETL 201
S M LNFR+E ++G EL+CKTL+AWE A+SPHLAAERE+ V DS V++ +
Sbjct: 131 SGMCSLNFRDEKTVTG-----APELLCKTLYAWEAAISPHLAAERENA-TVEDSVVLQMI 184
Query: 202 GKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRL 261
KCL++ +E +SE K ++LC+VETAGGVASPGPSG+LQCDLYRPFRLPGILVGDGRL
Sbjct: 185 EKCLKEEMECGVKSE--KSDLLCLVETAGGVASPGPSGTLQCDLYRPFRLPGILVGDGRL 242
Query: 262 GGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDSSNDL 321
GGISGTI+AYESLKLRGYD+ AVVFEDHGLVNEVPL SYLRN+VPVLVLPP+P+D S+DL
Sbjct: 243 GGISGTIAAYESLKLRGYDIAAVVFEDHGLVNEVPLTSYLRNKVPVLVLPPVPKDPSDDL 302
Query: 322 MEWFDESHNVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDS 381
+EWF ES VF +LK M+LA ER++RL M K AGE+FWWPFTQHKLV +E VTVIDS
Sbjct: 303 IEWFVESDGVFKALKETMVLANLERLERLNGMAKLAGEVFWWPFTQHKLVHQETVTVIDS 362
Query: 382 RCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENV 441
RCGENFS+Y+ N + QQFDACASWWTQGPD T Q ELAR+MGYTAARFGHVMFPENV
Sbjct: 363 RCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVMFPENV 422
Query: 442 YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTT 501
YEPAL+CAELLL GVGKGWASR YFSDNGSTAIEIALKMAFRKF DH +F
Sbjct: 423 YEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDH----NFCEATEE 478
Query: 502 EKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWI 561
EK I +KV+AL+GSYHGDTLGAMEAQAPSPYTGFLQQPWY+GRGLFLDPPTVF+ N W
Sbjct: 479 EKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWN 538
Query: 562 LSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIG 621
+SLPE E+ TF SRDEIF + RD+S LA IYS+Y+S++L ++ G++ S +G
Sbjct: 539 ISLPESFSEIAPEYG--TFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVG 596
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681
ALIIEPV+H AGGMHMVDPLFQR+LV EC+NRKIPVIFDEVFTGFWRLGVETT +LLGC
Sbjct: 597 ALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCK 656
Query: 682 PDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK 716
PDIAC+ KLLTGG++PLA TLAT+AVFDSF GDSK
Sbjct: 657 PDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSK 691
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|186532546|ref|NP_200567.2| adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Arabidopsis thaliana] gi|391737955|sp|B0F481.1|BIODA_ARATH RecName: Full=Bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid aminotransferase, mitochondrial; AltName: Full=Bifunctional BIO3-BIO1 protein; Includes: RecName: Full=Dethiobiotin synthetase; AltName: Full=DTB synthetase; Short=DTBS; AltName: Full=Protein BIOTIN AUXOTROPH 3; Includes: RecName: Full=7,8-diamino-pelargonic acid aminotransferase; Short=DAPA AT; Short=DAPA aminotransferase; AltName: Full=7,8-diaminononanoate synthase; Short=DANS; AltName: Full=Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; AltName: Full=Diaminopelargonic acid synthase; AltName: Full=Protein BIOTIN AUXOTROPH 1; Flags: Precursor gi|158726301|gb|ABW80569.1| mitochondrial bifunctional diaminopelargonate synthase-dethiobiotin synthetase [Arabidopsis thaliana] gi|332009541|gb|AED96924.1| adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Arabidopsis thaliana] gi|364285679|gb|AEW48251.1| bifunctional BIO3-BIO1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 945 bits (2442), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/687 (69%), Positives = 555/687 (80%), Gaps = 22/687 (3%)
Query: 30 PLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSD 89
P LPL+HPT+ IWSANTSLGKTLVS G+++SFLL SS+ K +YLKPIQTG+P DSD
Sbjct: 29 PFHLPLNHPTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKLLYLKPIQTGFPSDSD 88
Query: 90 SRFLFTKLPSLSLRRNFPSSLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNF 149
SRF+F+KL SLSLRR P S+ SNS+L SSL AAKS L + S M LNF
Sbjct: 89 SRFVFSKLDSLSLRRQIPISI--SNSVLHSSLPAAKS------LGLNVEVSESGMCSLNF 140
Query: 150 REENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGL 209
R+E ++G EL+CKTL+AWE A+SPHLAAERE+ V DS V++ + KCL++ +
Sbjct: 141 RDEKTVTG-----APELLCKTLYAWEAAISPHLAAERENA-TVEDSVVLQMIEKCLKEEM 194
Query: 210 ESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTIS 269
E +SE K ++LC+VETAGGVASPGPSG+LQCDLYRPFRLPGILVGDGRLGGISGTI+
Sbjct: 195 ECGVKSE--KSDLLCLVETAGGVASPGPSGTLQCDLYRPFRLPGILVGDGRLGGISGTIA 252
Query: 270 AYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDSSNDLMEWFDESH 329
AYESLKLRGYD+ AVVFEDHGLVNEVPL SYLRN+VPVLVLPP+P+D S+DL+EWF ES
Sbjct: 253 AYESLKLRGYDIAAVVFEDHGLVNEVPLTSYLRNKVPVLVLPPVPKDPSDDLIEWFVESD 312
Query: 330 NVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSV 389
VF +LK M+LA ER++RL M K AGE+FWWPFTQHKLV +E VTVIDSRCGENFS+
Sbjct: 313 GVFKALKETMVLANLERLERLNGMAKLAGEVFWWPFTQHKLVHQETVTVIDSRCGENFSI 372
Query: 390 YQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECA 449
Y+ N + QQFDACASWWTQGPD T Q ELAR+MGYTAARFGHVMFPENVYEPAL+CA
Sbjct: 373 YKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVMFPENVYEPALKCA 432
Query: 450 ELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKV 509
ELLL GVGKGWASR YFSDNGSTAIEIALKMAFRKF DH +F EK I +KV
Sbjct: 433 ELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDH----NFCEATEEEKHIVVKV 488
Query: 510 LALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLY 569
+AL+GSYHGDTLGAMEAQAPSPYTGFLQQPWY+GRGLFLDPPTVF+ N W +SLPE
Sbjct: 489 IALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFS 548
Query: 570 SKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVV 629
E+ TF SRDEIF + RD+S LA IYS+Y+S++L ++ G++ S +GALIIEPV+
Sbjct: 549 EIAPEYG--TFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVI 606
Query: 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGK 689
H AGGMHMVDPLFQR+LV EC+NRKIPVIFDEVFTGFWRLGVETT +LLGC PDIAC+ K
Sbjct: 607 HGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIACFAK 666
Query: 690 LLTGGVIPLAATLATNAVFDSFVGDSK 716
LLTGG++PLA TLAT+AVFDSF GDSK
Sbjct: 667 LLTGGMVPLAVTLATDAVFDSFSGDSK 693
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225446128|ref|XP_002270551.1| PREDICTED: uncharacterized protein LOC100259784 [Vitis vinifera] gi|297735352|emb|CBI17792.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 935 bits (2417), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/680 (69%), Positives = 551/680 (81%), Gaps = 14/680 (2%)
Query: 40 FQIWSANTSLGKTLVSAGLSSSFLLSP-TSSANKKFVYLKPIQTGYPHDSDSRFLFTKLP 98
+ IW++NT LGKTLVS GL+++ LLSP SS + KF+Y+KP+QTG+P DSDS F+F K
Sbjct: 55 YTIWASNTGLGKTLVSTGLAAATLLSPFPSSDSAKFIYIKPVQTGFPSDSDSAFVFRKFS 114
Query: 99 SLSLRRNFPSSLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGE 158
L LRR ++ SN +L +S AA++ L F + E+ DL EE R+ GE
Sbjct: 115 QLVLRRRPSFAVSASNHVLKASASAAEAVLG-----FGSEG-EGELRDLGAYEERRLLGE 168
Query: 159 E--DSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGLESESESE 216
E + SEL CKT++AW EA+SPHLA ERE GG V D ++E LG+CLR G SE
Sbjct: 169 EWAAGAASELTCKTMYAWREAISPHLAVERE-GGAVPDKVLLEVLGRCLRIG----SEDG 223
Query: 217 RGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKL 276
RG+M++ +VETAGGVASPGPSG+LQCDLYRPFRLP ILVGDGRLGGISGTISAYESLKL
Sbjct: 224 RGRMDVWSVVETAGGVASPGPSGTLQCDLYRPFRLPAILVGDGRLGGISGTISAYESLKL 283
Query: 277 RGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDSSNDLMEWFDESHNVFDSLK 336
RGYDVVA+V EDHGLVNEVPL+SYL NRVPVLVLPP+PQD S++LMEWFD+S VF SLK
Sbjct: 284 RGYDVVAIVIEDHGLVNEVPLLSYLGNRVPVLVLPPVPQDPSDNLMEWFDKSQAVFSSLK 343
Query: 337 NIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNK 396
IML YSERIQR DMPKRAG++FWWPFTQHKLVPEE VTVIDSRCGENFSV++ Q N
Sbjct: 344 EIMLSVYSERIQRFHDMPKRAGDIFWWPFTQHKLVPEETVTVIDSRCGENFSVHKVQNND 403
Query: 397 FIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGV 456
FI QQFDACASWWTQGPDATLQIELARD+GY AARFGHVMFPENVYEPALECAELLL+GV
Sbjct: 404 FIAQQFDACASWWTQGPDATLQIELARDVGYAAARFGHVMFPENVYEPALECAELLLEGV 463
Query: 457 GKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSY 516
GKGWASR +FSDNGSTAIE+ALKMAFRKFS DH +++D +T K IE+KV+ALKGSY
Sbjct: 464 GKGWASRTFFSDNGSTAIEVALKMAFRKFSLDHGIILDSTDPNTIGKFIEVKVIALKGSY 523
Query: 517 HGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHK 576
HGDTLGAMEAQAPS YTGFLQQPWY+G+GLFLDPPT+FM + W LSLPE + S+ ++ +
Sbjct: 524 HGDTLGAMEAQAPSSYTGFLQQPWYTGKGLFLDPPTIFMCDGIWKLSLPEGVQSEKLKQE 583
Query: 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636
++TF SR E F + RD S LA YSS+ISQ L GL+ G IGALIIEPVVH +GGMH
Sbjct: 584 ELTFQSRGEFFSKSRDGSSLAGSYSSFISQQLSAYSGLRGFGHIGALIIEPVVHGSGGMH 643
Query: 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVI 696
M+DPLFQR+LV EC++RKIPVIFDEVFTGFWRLG E+ ++LL C PDIAC+ KL+TGG+I
Sbjct: 644 MIDPLFQRVLVNECRSRKIPVIFDEVFTGFWRLGAESASELLCCQPDIACFAKLMTGGII 703
Query: 697 PLAATLATNAVFDSFVGDSK 716
PLAATLAT+AVF++F GDSK
Sbjct: 704 PLAATLATDAVFNAFAGDSK 723
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356550752|ref|XP_003543748.1| PREDICTED: l-Lysine-8-amino-7-oxononanoate aminotransferase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 922 bits (2384), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/688 (67%), Positives = 542/688 (78%), Gaps = 39/688 (5%)
Query: 33 LPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLS-PTSSANKKFVYLKPIQTGYPHDSDSR 91
LPLSHP + IW +NT +GKTLVSAG++++FLLS PT S +F YLKP+QTG+P DSDSR
Sbjct: 29 LPLSHPIYLIWGSNTGVGKTLVSAGIAAAFLLSSPTPS---QFHYLKPLQTGFPSDSDSR 85
Query: 92 FLFTKLPSLSLRRNFPSSLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFRE 151
F+F KL LSL RN L S+ ++ S S
Sbjct: 86 FVFNKLRQLSLIRNPHIPLSASHRVINVSPAVTAS------------------------- 120
Query: 152 ENRISGEED-SSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGLE 210
N ++GEE EL+CKTL+AWEEAVSPHLAAERE G VV DS V+ETLG+CL D E
Sbjct: 121 -NPLAGEEGVGPPPELLCKTLYAWEEAVSPHLAAERE-GLVVKDSAVLETLGECLEDVAE 178
Query: 211 SESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISA 270
+ ER E+LC+VETAGGVASPGPSGSLQCDLYRPFR+P +LVGDGRLGGISGTISA
Sbjct: 179 CGAGKERS--EVLCVVETAGGVASPGPSGSLQCDLYRPFRIPAVLVGDGRLGGISGTISA 236
Query: 271 YESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDSSNDLMEWFDESHN 330
YESLKLRGYDVVAVVFEDHGL+NE PLMSY+RN+VPVLVLPP+P+D NDLMEWF+ SH
Sbjct: 237 YESLKLRGYDVVAVVFEDHGLLNEGPLMSYMRNKVPVLVLPPIPKDPLNDLMEWFESSHY 296
Query: 331 VFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVY 390
+F +LK IML AY ERI++L DMP+ A ++ WWPFTQHKLVP+ VTVIDSRCGENFS++
Sbjct: 297 IFSNLKEIMLSAYFERIKKLHDMPREARDIIWWPFTQHKLVPDGGVTVIDSRCGENFSIF 356
Query: 391 QDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAE 450
+ QK + I QFDACASWWTQGPDA +Q ELAR+MGY AARFGHVMFPENV+EPAL CAE
Sbjct: 357 KVQKTEVIAPQFDACASWWTQGPDAIMQTELAREMGYAAARFGHVMFPENVHEPALNCAE 416
Query: 451 LLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVL 510
LLLQGVGKGWASR YFSDNGSTAIEIALKMAFRKFS DH ++V T E+ EL VL
Sbjct: 417 LLLQGVGKGWASRTYFSDNGSTAIEIALKMAFRKFSVDHGLIVHCHEDTTNERSTELMVL 476
Query: 511 ALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYS 570
AL+ SYHGDTLGAMEAQAPS YTGFLQQPWY+GRGLFLDPP+VFM+NS W +S+PE +
Sbjct: 477 ALQRSYHGDTLGAMEAQAPSSYTGFLQQPWYTGRGLFLDPPSVFMHNSTWNVSIPEGYHL 536
Query: 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630
+ ++ K TF S DEIF++ RD S+LA++YSSYIS+ L G + S +GALI+EPV+
Sbjct: 537 ESLKGK--TFASPDEIFHKGRDKSELATVYSSYISKVL---SGFRGSNNVGALIMEPVIQ 591
Query: 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKL 690
AGGMHMVDPLFQR+LV EC++RKIPVIFDEVFTGFWRLGVET +L+ CVPDIAC+GKL
Sbjct: 592 GAGGMHMVDPLFQRVLVNECRSRKIPVIFDEVFTGFWRLGVETAVELIHCVPDIACFGKL 651
Query: 691 LTGGVIPLAATLATNAVFDSFVGDSKKR 718
LTGG+IPLA TLATNAVFDSF+GDSK +
Sbjct: 652 LTGGIIPLAVTLATNAVFDSFIGDSKLK 679
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|390980930|pdb|4A0F|A Chain A, Structure Of Selenomethionine Substituted Bifunctional Dapa Aminotransferase-Dethiobiotin Synthetase From Arabidopsis Thaliana In Its Apo Form. gi|390980931|pdb|4A0F|B Chain B, Structure Of Selenomethionine Substituted Bifunctional Dapa Aminotransferase-Dethiobiotin Synthetase From Arabidopsis Thaliana In Its Apo Form | Back alignment and taxonomy information |
|---|
Score = 918 bits (2372), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/698 (67%), Positives = 547/698 (78%), Gaps = 22/698 (3%)
Query: 19 RLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78
R H + P LPL+HPT+ IWSANTSLGKTLVS G+++SFLL SS+ K +YLK
Sbjct: 16 RGSHXKSTSVSPFHLPLNHPTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKLLYLK 75
Query: 79 PIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSILFSSLFAAKSFLSSRDLPFQPQ 138
PIQTG+P DSDSRF+F+KL SLSLRR P S+ SNS+L SSL AAKS L +
Sbjct: 76 PIQTGFPSDSDSRFVFSKLDSLSLRRQIPISI--SNSVLHSSLPAAKS------LGLNVE 127
Query: 139 KFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVI 198
S LNFR+E ++G EL+CKTL+AWE A+SPHLAAERE+ V DS V+
Sbjct: 128 VSESGXCSLNFRDEKTVTG-----APELLCKTLYAWEAAISPHLAAERENA-TVEDSVVL 181
Query: 199 ETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGD 258
+ + KCL++ E +SE K ++LC+VETAGGVASPGPSG+LQCDLYRPFRLPGILVGD
Sbjct: 182 QXIEKCLKEEXECGVKSE--KSDLLCLVETAGGVASPGPSGTLQCDLYRPFRLPGILVGD 239
Query: 259 GRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDSS 318
GRLGGISGTI+AYESLKLRGYD+ AVVFEDHGLVNEVPL SYLRN+VPVLVLPP+P+D S
Sbjct: 240 GRLGGISGTIAAYESLKLRGYDIAAVVFEDHGLVNEVPLTSYLRNKVPVLVLPPVPKDPS 299
Query: 319 NDLMEWFDESHNVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTV 378
+DL+EWF ES VF +LK +LA ER++RL K AGE+FWWP+TQHKLV +E VTV
Sbjct: 300 DDLIEWFVESDGVFKALKETXVLANLERLERLNGXAKLAGEVFWWPYTQHKLVHQETVTV 359
Query: 379 IDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFP 438
IDSRCGENFS+Y+ N + QQFDACASWWTQGPD T Q ELAR+ GYTAARFGHV FP
Sbjct: 360 IDSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREXGYTAARFGHVXFP 419
Query: 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498
ENVYEPAL+CAELLL GVGKGWASR YFSDNGSTAIEIALK AFRKF DH +F
Sbjct: 420 ENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKXAFRKFCVDH----NFCEA 475
Query: 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558
EK I +KV+AL+GSYHGDTLGA EAQAPSPYTGFLQQPWY+GRGLFLDPPTVF+ N
Sbjct: 476 TEEEKHIVVKVIALRGSYHGDTLGAXEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNG 535
Query: 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSG 618
W +SLPE E+ TF SRDEIF + RD+S LA IYS+Y+S++L ++ G++ S
Sbjct: 536 SWNISLPESFSEIAPEYG--TFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSA 593
Query: 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678
+GALIIEPV+H AGG H VDPLFQR+LV EC+NRKIPVIFDEVFTGFWRLGVETT +LL
Sbjct: 594 HVGALIIEPVIHGAGGXHXVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELL 653
Query: 679 GCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK 716
GC PDIAC+ KLLTGG +PLA TLAT+AVFDSF GDSK
Sbjct: 654 GCKPDIACFAKLLTGGXVPLAVTLATDAVFDSFSGDSK 691
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449457131|ref|XP_004146302.1| PREDICTED: bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid aminotransferase, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 916 bits (2368), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/718 (64%), Positives = 552/718 (76%), Gaps = 18/718 (2%)
Query: 1 MLRLRRHHYPDHHRRILLRLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSS 60
MLRLRR+ + H +L + F + P T+ +W +NTS+GKTLVSAGL+S
Sbjct: 1 MLRLRRNFHLSRHP-LLFKPFSTAAPLPPLHLPLSHP-TYILWGSNTSVGKTLVSAGLAS 58
Query: 61 SFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSILFSS 120
SFL S + S F+YLKPIQTG+P DSDSRF+F KL SL RR+ SL+ S+ +L +S
Sbjct: 59 SFLHSDSPS---NFLYLKPIQTGFPSDSDSRFVFHKLSSLYRRRHARLSLLASDHVLNAS 115
Query: 121 LFAAKSFLSSRDLPFQPQKFNSE--MYDLNFREENRISGEEDSSVSELVCKTLFAWEEAV 178
L S D SE M +L EE R+ GEE S L+CKT++AW+EAV
Sbjct: 116 LPVLNSITGCGD--------GSELAMCELGQYEEQRLVGEESGLGSRLICKTMYAWKEAV 167
Query: 179 SPHLAAERESGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPS 238
SPHLAAERESG VV D+ VI++L CL GL ESE + +C+VETAGGVASPGPS
Sbjct: 168 SPHLAAERESG-VVDDALVIQSLQSCLNSGLGVNGESEGAETRAMCLVETAGGVASPGPS 226
Query: 239 GSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLM 298
GSLQCDLYR FRLP +LVGDGRLGGISGTISAYE+LKLRGYDV A++F D+GL NEV L
Sbjct: 227 GSLQCDLYRSFRLPCLLVGDGRLGGISGTISAYETLKLRGYDVAAIIFADNGLENEVVLS 286
Query: 299 SYLRNRVPVLVLPPLPQDSSNDLMEWFDESHNVFDSLKNIMLLAYSERIQRLCDMPKRAG 358
S+LR+RVP+LVLPP+P D ++DLM+WFD S NVFDSLK IML AYS+R+ RL +MPK+A
Sbjct: 287 SHLRDRVPILVLPPIPADITDDLMDWFDNSQNVFDSLKEIMLSAYSKRLNRLREMPKKAK 346
Query: 359 ELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQ 418
+FWWPFTQHKLV +EAVTVIDSRCGENF+V++DQ ++F+ QQFDACASWWTQGPDA LQ
Sbjct: 347 SIFWWPFTQHKLVADEAVTVIDSRCGENFTVFKDQGDEFMTQQFDACASWWTQGPDAALQ 406
Query: 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIAL 478
ELA DMGY AARFGHVMFPENVYEPALECAELLL GVGKGWASR YFSDNGSTAIEIAL
Sbjct: 407 TELASDMGYAAARFGHVMFPENVYEPALECAELLLAGVGKGWASRVYFSDNGSTAIEIAL 466
Query: 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQ 538
KMAFRKFS DH + ++ + +VLAL GSYHGDTLGAMEAQAPS YTGFLQQ
Sbjct: 467 KMAFRKFSIDHGIHDAQECNADAQRNLPFQVLALNGSYHGDTLGAMEAQAPSCYTGFLQQ 526
Query: 539 PWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598
PWY+GRG+FLDPPTV+M+ KW LSLP L + + ++ F SRDE+F E+RD SDLA
Sbjct: 527 PWYTGRGIFLDPPTVYMHGGKWYLSLPVGLQPETLRLENAFFDSRDEVFDEKRDGSDLAE 586
Query: 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVI 658
IYS+Y+SQ L + +GALI+EPV+ AGGMHMVDPLFQR+LVKECQ++KIPVI
Sbjct: 587 IYSAYLSQQLSNSSKSNSL--LGALIMEPVIQGAGGMHMVDPLFQRVLVKECQDKKIPVI 644
Query: 659 FDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK 716
FDEVFTGFWRLG ET A+LL CVPDIAC+ KL+TGG+IPL+ATLA+N+VF+SF+GDSK
Sbjct: 645 FDEVFTGFWRLGTETAAELLHCVPDIACFAKLMTGGIIPLSATLASNSVFESFIGDSK 702
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449510662|ref|XP_004163726.1| PREDICTED: LOW QUALITY PROTEIN: bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid aminotransferase, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 900 bits (2327), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/718 (64%), Positives = 546/718 (76%), Gaps = 26/718 (3%)
Query: 1 MLRLRRHHYPDHHRRILLRLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSS 60
MLRLRR+ + H +L + F + P T+ +W +NTS+GKTLVSAGL+S
Sbjct: 1 MLRLRRNFHLSRHP-LLFKPFSTAAPLPPLHLPLSHP-TYILWGSNTSVGKTLVSAGLAS 58
Query: 61 SFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSILFSS 120
SFL S + S F+YLKPIQTG+P DSDSRF+F KL SL RR+ SL+ S+ +L +S
Sbjct: 59 SFLHSDSPS---NFLYLKPIQTGFPSDSDSRFVFHKLSSLYRRRHARLSLLASDHVLNAS 115
Query: 121 LFAAKSFLSSRDLPFQPQKFNSE--MYDLNFREENRISGEEDSSVSELVCKTLFAWEEAV 178
L S D SE M +L EE R+ GEE S L+CKT++AW+EAV
Sbjct: 116 LPVLNSITGCGD--------GSELAMCELGQYEEQRLVGEESGLGSRLICKTMYAWKEAV 167
Query: 179 SPHLAAERESGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPS 238
SPHLAAERESG VV D+ VI++L CL GL ESE + +C+VETAGGVASPGPS
Sbjct: 168 SPHLAAERESG-VVDDALVIQSLQSCLNSGLGVNGESEGAETRAMCLVETAGGVASPGPS 226
Query: 239 GSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLM 298
GSLQCDLYR FRLP +LVGDGRLGGISGTISAYE+LKLRGYDV A++F D+GL NEV L
Sbjct: 227 GSLQCDLYRSFRLPCLLVGDGRLGGISGTISAYETLKLRGYDVAAIIFADNGLENEVVLS 286
Query: 299 SYLRNRVPVLVLPPLPQDSSNDLMEWFDESHNVFDSLKNIMLLAYSERIQRLCDMPKRAG 358
S+LR+RVP+LVLPP+P D ++DLM+WFD S NVFDSLK IML AYS+R+ RL +MPK A
Sbjct: 287 SHLRDRVPILVLPPIPADITDDLMDWFDNSQNVFDSLKEIMLSAYSKRLNRLREMPKXAK 346
Query: 359 ELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQ 418
+FWWPFTQHKLV +EAVTVIDSRCGENF+V++DQ ++F+ QQFDACASWWTQGPDA LQ
Sbjct: 347 SIFWWPFTQHKLVADEAVTVIDSRCGENFTVFKDQGDEFMTQQFDACASWWTQGPDAALQ 406
Query: 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIAL 478
ELA DMGY AARFGHVMFPENVYEPALECAELLL GVGKGWASR YFSDNGSTAIEIAL
Sbjct: 407 TELASDMGYAAARFGHVMFPENVYEPALECAELLLAGVGKGWASRVYFSDNGSTAIEIAL 466
Query: 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQ 538
KMAFRKFS DH + D + + EL VLAL GSYHGDTLGAMEAQAPS YTGFLQQ
Sbjct: 467 KMAFRKFSIDHGIH-DAQECNADAQRSELMVLALNGSYHGDTLGAMEAQAPSCYTGFLQQ 525
Query: 539 PWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598
PWY+GRG+FLDPPTV+M+ KW LSLP L + T + +F E+RD SDLA
Sbjct: 526 PWYTGRGIFLDPPTVYMHGGKWYLSLPVGLQPE-------TLRLENALFDEKRDGSDLAE 578
Query: 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVI 658
IYS+Y+SQ L + +GALI+EPV+ AGGMHMVDPLFQR+LVKECQ++KIPVI
Sbjct: 579 IYSAYLSQQLSNSSKSNSL--LGALIMEPVIQGAGGMHMVDPLFQRVLVKECQDKKIPVI 636
Query: 659 FDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK 716
FDEVFTGFWRLG ET A+LL CVPDIAC+ KL+TGG+IPL+ATLA+N+VF+SF+GDSK
Sbjct: 637 FDEVFTGFWRLGTETAAELLHCVPDIACFAKLMTGGIIPLSATLASNSVFESFIGDSK 694
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357145329|ref|XP_003573605.1| PREDICTED: adenosylmethionine-8-amino-7-oxononanoate aminotransferase-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 804 bits (2077), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/709 (58%), Positives = 510/709 (71%), Gaps = 34/709 (4%)
Query: 14 RRILL-----RLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTS 68
RR+LL R + S+F LPL+ PTF ++ ANT +GKTLVSAGL++S L SPT+
Sbjct: 3 RRLLLAHARRRRHYSSSFSSA---LPLASPTFAVFGANTGVGKTLVSAGLAASLLRSPTA 59
Query: 69 SANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSILFSSLFAAKSFL 128
S + +YLKP+QTG+P DSD+ FLF ++P+L LR + + L+ S L S
Sbjct: 60 SPSA-VLYLKPLQTGFPADSDAGFLFRRVPAL-LRPSTAARLVASLDTLSCSPSLEPPPP 117
Query: 129 SSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERES 188
S + F +GE ++ L C+TL+AW EAVSPHLA ERE
Sbjct: 118 SPEEAAFS------------------YAGEGETVRKILTCRTLYAWREAVSPHLAVERE- 158
Query: 189 GGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRP 248
G V D+ V L CL + G+ E+ ++ETAGGVASPGPSG+LQCDLYRP
Sbjct: 159 GMAVEDAHVRSRLAACL----VEGEDLGEGEGEVWKLIETAGGVASPGPSGTLQCDLYRP 214
Query: 249 FRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVL 308
FRLP ILVGDGRLGGIS T+SAYE+L LRGYD+ AV+ ED GL N++ L+SYLRNRVPVL
Sbjct: 215 FRLPTILVGDGRLGGISSTLSAYETLLLRGYDISAVILEDRGLSNDMFLLSYLRNRVPVL 274
Query: 309 VLPPLPQDSSNDLMEWFDESHNVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQH 368
VLPP+P+D S+DL +W ES +VF LK+ + +S RIQRL M +++ +L WWPFTQH
Sbjct: 275 VLPPIPEDPSDDLTDWLSESSSVFGLLKDALQSFHSRRIQRLNSMQRKSKDLLWWPFTQH 334
Query: 369 KLVPEEAVTVIDSRCGENFSVYQDQKNKFIG-QQFDACASWWTQGPDATLQIELARDMGY 427
LVP ++VTVIDSRCGE+FS Y+ + NK + QFDACASWWTQGPD+ LQ+ELARDMGY
Sbjct: 335 NLVPVDSVTVIDSRCGESFSTYKVKDNKMMMIPQFDACASWWTQGPDSNLQMELARDMGY 394
Query: 428 TAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSF 487
A R+GHVMFPEN +EPAL CAELLL GVGK WASR Y+SDNGSTAIEIALKMAFRKFSF
Sbjct: 395 AAGRYGHVMFPENAHEPALRCAELLLGGVGKDWASRVYYSDNGSTAIEIALKMAFRKFSF 454
Query: 488 DHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLF 547
DH +L+D T E+ I+LKVLAL+GSYHGDTLGAMEAQAPS YT FLQQPWYSGRGLF
Sbjct: 455 DHGILLDSDKSMTNERNIQLKVLALQGSYHGDTLGAMEAQAPSAYTSFLQQPWYSGRGLF 514
Query: 548 LDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQN 607
LDPPTVF+ N LSLP+ + + D S E+F RDSS A +YS+YISQ
Sbjct: 515 LDPPTVFIRNETCCLSLPQSIQHGHLSPGDKCIPSLAEVFCNTRDSSYAADLYSTYISQQ 574
Query: 608 LLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFW 667
L + + + ALIIEPV+ AGGMHM+DPLFQR+LVKEC+NRKIPVIFDEVFTGFW
Sbjct: 575 LSEYSLSSNTEHVAALIIEPVIQGAGGMHMIDPLFQRLLVKECRNRKIPVIFDEVFTGFW 634
Query: 668 RLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK 716
RLGVE+ ++LLGC+PDIACY KL+TGG++PLAAT+ T VF++F DSK
Sbjct: 635 RLGVESASELLGCLPDIACYAKLMTGGIVPLAATVTTEGVFEAFKSDSK 683
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|326517942|dbj|BAK07223.1| predicted protein [Hordeum vulgare subsp. vulgare] | Back alignment and taxonomy information |
|---|
Score = 791 bits (2044), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/686 (59%), Positives = 498/686 (72%), Gaps = 27/686 (3%)
Query: 33 LPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRF 92
LPLS PTF ++ ANT +GKTLVSAGL++S L S ++ +YLKP+QTG+P DSD+ F
Sbjct: 23 LPLSSPTFAVFGANTGVGKTLVSAGLAASLLRS-HAAFPSAVLYLKPLQTGFPDDSDAGF 81
Query: 93 LFTKLPSLSLRRNFPSSLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREE 152
L+ ++P+L LR + + L S L + S + F YD
Sbjct: 82 LYRRVPAL-LRPSHAAHLAASIDTLSPAPSVETQSPSREEAAFS--------YD------ 126
Query: 153 NRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGLESE 212
GE ++ L C+TL+AW EAVSPHLAAERE G V D+ V L CL +G
Sbjct: 127 ----GEGEAVRKLLACRTLYAWREAVSPHLAAERE-GMAVEDAHVRSLLAACLVEG---- 177
Query: 213 SESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYE 272
+G+ ++ +VETAGGVASPGPSG+LQCDLYR FRLP ILVGDGRLGGIS T+SAYE
Sbjct: 178 ENLGKGEGDVWKLVETAGGVASPGPSGTLQCDLYRQFRLPTILVGDGRLGGISCTLSAYE 237
Query: 273 SLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDSSNDLMEWFDESHNVF 332
+L LRGYDV AV+ EDHGL N L+SYLRNRVPVLVLPP+P+D S+DL +WF ES +VF
Sbjct: 238 TLLLRGYDVSAVILEDHGLSNNKFLLSYLRNRVPVLVLPPIPEDPSDDLTDWFSESSSVF 297
Query: 333 DSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQD 392
L++ + + RIQRL M +++ +L WWPFTQH LVP + VTVIDSRCGE+FS Y+
Sbjct: 298 GLLEDALRSFHLTRIQRLNSMQRKSKDLLWWPFTQHNLVPVDCVTVIDSRCGESFSAYKV 357
Query: 393 QKNKFIG-QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAEL 451
+ NK + QFDACASWWTQGPD+ LQIELARDMGY AAR+GHVMFPEN +EPAL CAEL
Sbjct: 358 KDNKMMMIPQFDACASWWTQGPDSKLQIELARDMGYAAARYGHVMFPENAHEPALRCAEL 417
Query: 452 LLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTE-KCIELKVL 510
LL G+GK WASR Y+SDNGSTAIEIALKMAFRKFS D +L+D T + I+LKVL
Sbjct: 418 LLGGIGKDWASRVYYSDNGSTAIEIALKMAFRKFSLDRGILLDSDKSIITNGRNIQLKVL 477
Query: 511 ALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYS 570
ALKGSYHGDTLGAMEAQAPS YT FLQQPWYSGRGLFLDPPTVF+ N LSLP+ + +
Sbjct: 478 ALKGSYHGDTLGAMEAQAPSAYTSFLQQPWYSGRGLFLDPPTVFIKNGTCTLSLPQAIQN 537
Query: 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630
+ D F S E+F + RDSS A +YS+YISQ L + + I ALIIEPV+
Sbjct: 538 CHLSPGDKCFPSLAEVFCKTRDSSSAADLYSTYISQQLSEYSLSSNTEHIAALIIEPVIQ 597
Query: 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKL 690
AGGMHM+DPLFQR+LV EC++RKIPVIFDEVFTGFWRLGVE+ ++LLGC+PD+ACY KL
Sbjct: 598 GAGGMHMIDPLFQRVLVHECRDRKIPVIFDEVFTGFWRLGVESASELLGCLPDVACYAKL 657
Query: 691 LTGGVIPLAATLATNAVFDSFVGDSK 716
+TGG++PLAAT+ T AVF++F DSK
Sbjct: 658 MTGGLVPLAATVTTEAVFEAFKSDSK 683
|
Source: Hordeum vulgare subsp. vulgare Species: Hordeum vulgare Genus: Hordeum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 719 | ||||||
| TAIR|locus:2174532 | 833 | BIO1 "AT5G57590" [Arabidopsis | 0.924 | 0.798 | 0.643 | 3.2e-232 | |
| ASPGD|ASPL0000002022 | 787 | biA [Emericella nidulans (taxi | 0.509 | 0.465 | 0.384 | 2.1e-93 | |
| TIGR_CMR|NSE_0618 | 447 | NSE_0618 "adenosylmethionine-8 | 0.147 | 0.237 | 0.390 | 6.5e-23 | |
| UNIPROTKB|P0A4X6 | 437 | bioA "Adenosylmethionine-8-ami | 0.146 | 0.240 | 0.427 | 4.5e-21 | |
| TIGR_CMR|ECH_0666 | 426 | ECH_0666 "adenosylmethionine-8 | 0.133 | 0.225 | 0.395 | 2.2e-20 | |
| TIGR_CMR|CPS_2593 | 446 | CPS_2593 "adenosylmethionine-8 | 0.122 | 0.197 | 0.431 | 1.7e-19 | |
| TIGR_CMR|GSU_1582 | 453 | GSU_1582 "adenosylmethionine-- | 0.139 | 0.220 | 0.411 | 2.1e-19 | |
| TIGR_CMR|BA_4341 | 462 | BA_4341 "adenosylmethionine--8 | 0.139 | 0.216 | 0.36 | 2.9e-19 | |
| UNIPROTKB|Q9KSZ5 | 428 | bioA "Adenosylmethionine-8-ami | 0.126 | 0.212 | 0.439 | 3.8e-19 | |
| TIGR_CMR|VC_1111 | 428 | VC_1111 "adenosylmethionine-8- | 0.126 | 0.212 | 0.439 | 3.8e-19 |
| TAIR|locus:2174532 BIO1 "AT5G57590" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2240 (793.6 bits), Expect = 3.2e-232, P = 3.2e-232
Identities = 442/687 (64%), Positives = 513/687 (74%)
Query: 30 PLDLPLSHPTFQIWSANTSLGKTLVSAGXXXXXXXXXXXXANKKFVYLKPIQTGYPHDSD 89
P LPL+HPT+ IWSANTSLGKTLVS G + K +YLKPIQTG+P DSD
Sbjct: 29 PFHLPLNHPTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKLLYLKPIQTGFPSDSD 88
Query: 90 SRFLFTKLPSLSLRRNFPXXXXXXXXXXXXXXXXXXXXXXXRDLPFQPQKFNSEMYDLNF 149
SRF+F+KL SLSLRR P + L + S M LNF
Sbjct: 89 SRFVFSKLDSLSLRRQIPISISNSVLHSSLPAA--------KSLGLNVEVSESGMCSLNF 140
Query: 150 REENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGL 209
R+E ++G EL+CKTL+AWE A+SPHLAAERE+ V DS V++ + KCL++ +
Sbjct: 141 RDEKTVTG-----APELLCKTLYAWEAAISPHLAAERENA-TVEDSVVLQMIEKCLKEEM 194
Query: 210 ESESESERGKMEILCIVETXXXXXXXXXXXXLQCDLYRPFRLPGILVGDGRLGGISGTIS 269
E +SE K ++LC+VET LQCDLYRPFRLPGILVGDGRLGGISGTI+
Sbjct: 195 ECGVKSE--KSDLLCLVETAGGVASPGPSGTLQCDLYRPFRLPGILVGDGRLGGISGTIA 252
Query: 270 AYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRXXXXXXXXXXQDSSNDLMEWFDESH 329
AYESLKLRGYD+ AVVFEDHGLVNEVPL SYLRN+ +D S+DL+EWF ES
Sbjct: 253 AYESLKLRGYDIAAVVFEDHGLVNEVPLTSYLRNKVPVLVLPPVPKDPSDDLIEWFVESD 312
Query: 330 NVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSV 389
VF +LK M+LA ER++RL M K AGE+FWWPFTQHKLV +E VTVIDSRCGENFS+
Sbjct: 313 GVFKALKETMVLANLERLERLNGMAKLAGEVFWWPFTQHKLVHQETVTVIDSRCGENFSI 372
Query: 390 YQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECA 449
Y+ N + QQFDACASWWTQGPD T Q ELAR+MGYTAARFGHVMFPENVYEPAL+CA
Sbjct: 373 YKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVMFPENVYEPALKCA 432
Query: 450 ELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKV 509
ELLL GVGKGWASR YFSDNGSTAIEIALKMAFRKF DH +F EK I +KV
Sbjct: 433 ELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDH----NFCEATEEEKHIVVKV 488
Query: 510 LALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLY 569
+AL+GSYHGDTLGAMEAQAPSPYTGFLQQPWY+GRGLFLDPPTVF+ N W +SLPE +
Sbjct: 489 IALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPE-SF 547
Query: 570 SKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVV 629
S+I TF SRDEIF + RD+S LA IYS+Y+S++L ++ G++ S +GALIIEPV+
Sbjct: 548 SEIAPEYG-TFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVI 606
Query: 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGK 689
H AGGMHMVDPLFQR+LV EC+NRKIPVIFDEVFTGFWRLGVETT +LLGC PDIAC+ K
Sbjct: 607 HGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIACFAK 666
Query: 690 LLTGGVIPLAATLATNAVFDSFVGDSK 716
LLTGG++PLA TLAT+AVFDSF GDSK
Sbjct: 667 LLTGGMVPLAVTLATDAVFDSFSGDSK 693
|
|
| ASPGD|ASPL0000002022 biA [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 633 (227.9 bits), Expect = 2.1e-93, Sum P(3) = 2.1e-93
Identities = 159/413 (38%), Positives = 221/413 (53%)
Query: 334 SLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVY--- 390
SL + ++L +R++ L +M RA + W+PFTQH + + +T IDS + F Y
Sbjct: 245 SLLDELVLKNKQRVEYLDEMASRAQKTIWYPFTQHHGMAAKDITPIDSAYDDFFQTYVTA 304
Query: 391 -QDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECA 449
+ + + FD ASWWTQG LA Y A R+GHVMFP N++EPAL A
Sbjct: 305 DRSAQQGRLQATFDGSASWWTQGLGHG-NPGLALSAAYAAGRYGHVMFPGNIHEPALALA 363
Query: 450 ELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKV 509
E LL+ V + +++DNGST +E+ALKM R D G D +++ ++ +
Sbjct: 364 ESLLKTVDNPRLQKVFYTDNGSTGMEVALKMGLR-------AACDRYGWDASKE--QINI 414
Query: 510 LALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLY 569
L LKGSYHGDT+G M+ PS Y ++ WY GRG + D P V M W + +P L
Sbjct: 415 LGLKGSYHGDTIGVMDCSEPSTYNQRVE--WYRGRGHWFDFPLVKMSQGVWQVEVPATLQ 472
Query: 570 SKIVEHKDITFCSRDEIF-YEERDSSDLASIYSSYISQN---LLQNPGLKVSGCIGALII 625
+ + ++ F S D +F E R SD Y YI + L+ G K GALI+
Sbjct: 473 ASLGGNQQ--FSSLDAVFDVESRVRSDAGQRYRKYILETIERLVTQEGKK----FGALIM 526
Query: 626 EPVVHAAGGMHMVDPLFQRILVKECQ------NRK---------------IPVIFDEVFT 664
EP++ AGGM DPLFQR L + NR +PVIFDEVFT
Sbjct: 527 EPIILGAGGMLFCDPLFQRCLADVVRGNPQLFNRGRLTEPQPQTDLSWSGLPVIFDEVFT 586
Query: 665 GFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKK 717
G +RLG +++A LG PDIA KLLTGG++PL TLA+N +F++F K+
Sbjct: 587 GLYRLGRKSSASFLGVNPDIAVNAKLLTGGLVPLCTTLASNEIFNAFTSPEKR 639
|
|
| TIGR_CMR|NSE_0618 NSE_0618 "adenosylmethionine-8-amino-7-oxononanoate aminotransferase" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] | Back alignment and assigned GO terms |
|---|
Score = 183 (69.5 bits), Expect = 6.5e-23, Sum P(2) = 6.5e-23
Identities = 43/110 (39%), Positives = 61/110 (55%)
Query: 606 QNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG 665
QN L+ +V+G I EP+V AGGM M + VK + I IFDE+ TG
Sbjct: 204 QNFLEQNLNRVAG----FIAEPLVQGAGGMRMCRYKYLEQCVKLFKEYGILTIFDEIMTG 259
Query: 666 FWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS 715
F+R G +D + PDI C K LTGG +PL+ T+ T V+++F+ D+
Sbjct: 260 FYRTGKMFASDYILSKPDILCLSKGLTGGFLPLSLTITTERVYNAFLSDN 309
|
|
| UNIPROTKB|P0A4X6 bioA "Adenosylmethionine-8-amino-7-oxononanoate aminotransferase" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Score = 204 (76.9 bits), Expect = 4.5e-21, Sum P(2) = 4.5e-21
Identities = 47/110 (42%), Positives = 61/110 (55%)
Query: 595 DLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK 654
D YS+ L Q+ +G + A+++EPVV AGGM DP + L C+ +
Sbjct: 194 DYDPAYSAAFEAQLAQH-----AGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYE 248
Query: 655 IPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLAT 704
+ +IFDE+ TGF R G AD G PDI C GK LTGG + LAATL T
Sbjct: 249 VLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALTGGYLSLAATLCT 298
|
|
| TIGR_CMR|ECH_0666 ECH_0666 "adenosylmethionine-8-amino-7-oxononanoate aminotransferase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] | Back alignment and assigned GO terms |
|---|
Score = 170 (64.9 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
Identities = 38/96 (39%), Positives = 56/96 (58%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
+ A+I+EP++ AAGGM + + + + ++ + I DEV TGF RLG +
Sbjct: 203 VAAIILEPILQAAGGMLIHSASTVKKICEIARDNNMLFIADEVATGFGRLGTMFGCNQAD 262
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS 715
VPDI GK LTGG LAATL T V+++F+ D+
Sbjct: 263 IVPDIMVIGKALTGGFCTLAATLTTEEVYNAFLSDN 298
|
|
| TIGR_CMR|CPS_2593 CPS_2593 "adenosylmethionine-8-amino-7-oxononanoate aminotransferase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 172 (65.6 bits), Expect = 1.7e-19, Sum P(2) = 1.7e-19
Identities = 38/88 (43%), Positives = 46/88 (52%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
I A IIEP+V GGM P + + C + +I DE+ TGF R G + G
Sbjct: 222 IAAFIIEPIVQGTGGMRFYHPEYLKACRLLCDKYDVLLIVDEIATGFGRTGKLFACEWAG 281
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAV 707
PDI C GK LTGG I LAATL T +
Sbjct: 282 INPDIMCLGKTLTGGYITLAATLCTTHI 309
|
|
| TIGR_CMR|GSU_1582 GSU_1582 "adenosylmethionine--8-amino-7-oxononanoate aminotransferase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 179 (68.1 bits), Expect = 2.1e-19, Sum P(2) = 2.1e-19
Identities = 42/102 (41%), Positives = 59/102 (57%)
Query: 617 SGCIGALIIEPVVHAAGGMHMVDPL-FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA 675
+G + L+IEP+V AGGM +V P F + + + C I +I DEV GF R G
Sbjct: 215 AGEVAGLVIEPLVQGAGGM-IVQPEGFLKGVRELCDRHDILMIADEVAVGFGRTGAMFAC 273
Query: 676 DLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKK 717
G PDI K +T G +PLAATLAT V+D+F+G+ ++
Sbjct: 274 GREGITPDIMALSKGITAGYMPLAATLATQQVYDAFLGEYRE 315
|
|
| TIGR_CMR|BA_4341 BA_4341 "adenosylmethionine--8-amino-7-oxononanoate aminotransferase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 164 (62.8 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
Identities = 36/100 (36%), Positives = 57/100 (57%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
I A+I+EP++ AGGM + + R L C + I DEV TGF R G +
Sbjct: 226 IAAIIVEPLMQGAGGMITMPKGYLRGLRNLCTKYNVLFITDEVATGFGRTGKMFACEHEN 285
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKKRE 719
PDI GK LTGG +P+A T+ T+ ++++F+G ++++
Sbjct: 286 VTPDILTAGKGLTGGYLPVAITVTTDEIYNAFLGSYEEQK 325
|
|
| UNIPROTKB|Q9KSZ5 bioA "Adenosylmethionine-8-amino-7-oxononanoate aminotransferase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 183 (69.5 bits), Expect = 3.8e-19, Sum P(2) = 3.8e-19
Identities = 40/91 (43%), Positives = 52/91 (57%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
I A+I+EP+V AGGM + P F R + C + +I DE+ TGF R G + G
Sbjct: 204 IAAVILEPIVQGAGGMRIYHPEFLRQVRALCDEFGVLLILDEIATGFGRTGKLFACEHAG 263
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDS 710
PDI C GK LTGG + L+ATL T V D+
Sbjct: 264 IQPDILCVGKALTGGYMTLSATLTTQQVADT 294
|
|
| TIGR_CMR|VC_1111 VC_1111 "adenosylmethionine-8-amino-7-oxononanoate aminotransferase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 183 (69.5 bits), Expect = 3.8e-19, Sum P(2) = 3.8e-19
Identities = 40/91 (43%), Positives = 52/91 (57%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
I A+I+EP+V AGGM + P F R + C + +I DE+ TGF R G + G
Sbjct: 204 IAAVILEPIVQGAGGMRIYHPEFLRQVRALCDEFGVLLILDEIATGFGRTGKLFACEHAG 263
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDS 710
PDI C GK LTGG + L+ATL T V D+
Sbjct: 264 IQPDILCVGKALTGGYMTLSATLTTQQVADT 294
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B0F481 | BIODA_ARATH | 2, ., 6, ., 1, ., 6, 2 | 0.6972 | 0.9248 | 0.7983 | yes | no |
| Q6ZKV8 | BIODA_ORYSJ | 2, ., 6, ., 1, ., 6, 2 | 0.5788 | 0.9346 | 0.8185 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.3.3.3 | LOW CONFIDENCE prediction! |
| 3rd Layer | 6.3.3 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | fgenesh2_kg.8__1672__AT5G57590.1 | annotation not avaliable (839 aa) | |||||||||
(Arabidopsis lyrata) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | fgenesh2_kg.6__378__AT5G04620.2 | annotation not avaliable (476 aa) | • | • | • | 0.728 | |||||
 | scaffold_403221.1 | annotation not avaliable (377 aa) | • | • | • | 0.577 | |||||
 | Al_scaffold_0004_2992 | annotation not avaliable (219 aa) | • | • | 0.440 | ||||||
 | fgenesh1_pg.C_scaffold_3002136 | annotation not avaliable (134 aa) | • | • | 0.431 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 719 | |||
| PLN02974 | 817 | PLN02974, PLN02974, adenosylmethionine-8-amino-7-o | 0.0 | |
| TIGR00508 | 417 | TIGR00508, bioA, adenosylmethionine-8-amino-7-oxon | 2e-54 | |
| PRK05964 | 423 | PRK05964, PRK05964, adenosylmethionine--8-amino-7- | 2e-52 | |
| COG0161 | 449 | COG0161, BioA, Adenosylmethionine-8-amino-7-oxonon | 2e-44 | |
| cd00610 | 413 | cd00610, OAT_like, Acetyl ornithine aminotransfera | 1e-31 | |
| PRK08742 | 472 | PRK08742, PRK08742, adenosylmethionine--8-amino-7- | 1e-31 | |
| pfam00202 | 338 | pfam00202, Aminotran_3, Aminotransferase class-III | 6e-31 | |
| PRK07030 | 466 | PRK07030, PRK07030, adenosylmethionine--8-amino-7- | 5e-29 | |
| PRK05630 | 422 | PRK05630, PRK05630, adenosylmethionine--8-amino-7- | 4e-28 | |
| PRK06173 | 429 | PRK06173, PRK06173, adenosylmethionine--8-amino-7- | 2e-27 | |
| PRK07986 | 428 | PRK07986, PRK07986, adenosylmethionine--8-amino-7- | 5e-27 | |
| PRK06916 | 460 | PRK06916, PRK06916, adenosylmethionine--8-amino-7- | 4e-26 | |
| COG0160 | 447 | COG0160, GabT, 4-aminobutyrate aminotransferase an | 3e-20 | |
| pfam13500 | 197 | pfam13500, AAA_26, AAA domain | 2e-17 | |
| COG4992 | 404 | COG4992, ArgD, Ornithine/acetylornithine aminotran | 9e-17 | |
| PRK07481 | 449 | PRK07481, PRK07481, hypothetical protein; Provisio | 2e-16 | |
| PRK02627 | 396 | PRK02627, PRK02627, acetylornithine aminotransfera | 2e-15 | |
| TIGR00707 | 379 | TIGR00707, argD, transaminase, acetylornithine/suc | 5e-14 | |
| PRK09221 | 445 | PRK09221, PRK09221, beta alanine--pyruvate transam | 2e-13 | |
| PRK13360 | 442 | PRK13360, PRK13360, omega amino acid--pyruvate tra | 4e-13 | |
| PRK06917 | 447 | PRK06917, PRK06917, hypothetical protein; Provisio | 3e-12 | |
| PRK06943 | 453 | PRK06943, PRK06943, adenosylmethionine--8-amino-7- | 5e-12 | |
| PRK05769 | 441 | PRK05769, PRK05769, 4-aminobutyrate aminotransfera | 6e-12 | |
| PRK08117 | 433 | PRK08117, PRK08117, 4-aminobutyrate aminotransfera | 8e-12 | |
| PRK06082 | 459 | PRK06082, PRK06082, 4-aminobutyrate aminotransfera | 5e-11 | |
| PRK00090 | 222 | PRK00090, bioD, dithiobiotin synthetase; Reviewed | 1e-10 | |
| PRK08088 | 425 | PRK08088, PRK08088, 4-aminobutyrate aminotransfera | 2e-10 | |
| PRK11522 | 459 | PRK11522, PRK11522, putrescine--2-oxoglutarate ami | 2e-10 | |
| TIGR00713 | 423 | TIGR00713, hemL, glutamate-1-semialdehyde-2,1-amin | 2e-10 | |
| PRK07480 | 456 | PRK07480, PRK07480, putative aminotransferase; Val | 4e-10 | |
| COG0001 | 432 | COG0001, HemL, Glutamate-1-semialdehyde aminotrans | 6e-10 | |
| PRK07678 | 451 | PRK07678, PRK07678, aminotransferase; Validated | 4e-09 | |
| TIGR03372 | 442 | TIGR03372, putres_am_tran, putrescine aminotransfe | 4e-09 | |
| PRK06943 | 453 | PRK06943, PRK06943, adenosylmethionine--8-amino-7- | 7e-09 | |
| PRK06062 | 451 | PRK06062, PRK06062, hypothetical protein; Provisio | 8e-09 | |
| PRK07036 | 466 | PRK07036, PRK07036, hypothetical protein; Provisio | 1e-08 | |
| PRK00062 | 426 | PRK00062, PRK00062, glutamate-1-semialdehyde amino | 2e-08 | |
| PTZ00125 | 400 | PTZ00125, PTZ00125, ornithine aminotransferase-lik | 1e-07 | |
| COG0132 | 223 | COG0132, BioD, Dethiobiotin synthetase [Coenzyme m | 1e-07 | |
| TIGR00700 | 420 | TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransf | 1e-07 | |
| PRK03244 | 398 | PRK03244, argD, acetylornithine aminotransferase; | 1e-07 | |
| PRK07495 | 425 | PRK07495, PRK07495, 4-aminobutyrate aminotransfera | 2e-07 | |
| pfam13500 | 197 | pfam13500, AAA_26, AAA domain | 3e-07 | |
| TIGR00347 | 166 | TIGR00347, bioD, dethiobiotin synthase | 3e-07 | |
| PLN02760 | 504 | PLN02760, PLN02760, 4-aminobutyrate:pyruvate trans | 3e-07 | |
| PRK06541 | 460 | PRK06541, PRK06541, hypothetical protein; Provisio | 3e-07 | |
| PRK07483 | 443 | PRK07483, PRK07483, hypothetical protein; Provisio | 5e-07 | |
| PRK07483 | 443 | PRK07483, PRK07483, hypothetical protein; Provisio | 6e-07 | |
| PRK03715 | 395 | PRK03715, argD, acetylornithine transaminase prote | 6e-07 | |
| PRK01278 | 389 | PRK01278, argD, acetylornithine transaminase prote | 8e-07 | |
| PRK00615 | 433 | PRK00615, PRK00615, glutamate-1-semialdehyde amino | 8e-07 | |
| PLN02624 | 474 | PLN02624, PLN02624, ornithine-delta-aminotransfera | 9e-07 | |
| PRK06105 | 460 | PRK06105, PRK06105, aminotransferase; Provisional | 1e-06 | |
| TIGR03246 | 397 | TIGR03246, arg_catab_astC, succinylornithine trans | 8e-06 | |
| TIGR01885 | 401 | TIGR01885, Orn_aminotrans, ornithine aminotransfer | 9e-06 | |
| PLN00144 | 382 | PLN00144, PLN00144, acetylornithine transaminase | 2e-05 | |
| PRK02936 | 377 | PRK02936, argD, acetylornithine aminotransferase; | 2e-05 | |
| PRK12381 | 406 | PRK12381, PRK12381, bifunctional succinylornithine | 3e-05 | |
| PRK12389 | 428 | PRK12389, PRK12389, glutamate-1-semialdehyde amino | 4e-05 | |
| PRK07482 | 461 | PRK07482, PRK07482, hypothetical protein; Provisio | 4e-05 | |
| PLN02482 | 474 | PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-a | 4e-05 | |
| PRK05093 | 403 | PRK05093, argD, bifunctional N-succinyldiaminopime | 4e-05 | |
| PRK06777 | 421 | PRK06777, PRK06777, 4-aminobutyrate aminotransfera | 6e-05 | |
| PRK06058 | 443 | PRK06058, PRK06058, 4-aminobutyrate aminotransfera | 8e-05 | |
| PRK04073 | 396 | PRK04073, rocD, ornithine--oxo-acid transaminase; | 8e-05 | |
| PRK06541 | 460 | PRK06541, PRK06541, hypothetical protein; Provisio | 1e-04 | |
| TIGR03246 | 397 | TIGR03246, arg_catab_astC, succinylornithine trans | 1e-04 | |
| TIGR00709 | 442 | TIGR00709, dat, 2,4-diaminobutyrate 4-transaminase | 1e-04 | |
| PLN00144 | 382 | PLN00144, PLN00144, acetylornithine transaminase | 2e-04 | |
| PRK05093 | 403 | PRK05093, argD, bifunctional N-succinyldiaminopime | 2e-04 | |
| TIGR03251 | 431 | TIGR03251, LAT_fam, L-lysine 6-transaminase | 2e-04 | |
| PRK08360 | 443 | PRK08360, PRK08360, 4-aminobutyrate aminotransfera | 3e-04 | |
| cd03109 | 134 | cd03109, DTBS, Dethiobiotin synthetase (DTBS) is t | 4e-04 | |
| PRK06918 | 451 | PRK06918, PRK06918, 4-aminobutyrate aminotransfera | 4e-04 | |
| PRK00854 | 401 | PRK00854, rocD, ornithine--oxo-acid transaminase; | 5e-04 | |
| PRK12381 | 406 | PRK12381, PRK12381, bifunctional succinylornithine | 6e-04 | |
| PRK04260 | 375 | PRK04260, PRK04260, acetylornithine aminotransfera | 6e-04 | |
| COG0132 | 223 | COG0132, BioD, Dethiobiotin synthetase [Coenzyme m | 0.002 | |
| PRK01278 | 389 | PRK01278, argD, acetylornithine transaminase prote | 0.002 | |
| PRK08297 | 443 | PRK08297, PRK08297, L-lysine aminotransferase; Pro | 0.003 | |
| PRK09792 | 421 | PRK09792, PRK09792, 4-aminobutyrate transaminase; | 0.004 | |
| PRK04612 | 408 | PRK04612, argD, acetylornithine transaminase prote | 0.004 |
| >gnl|CDD|215526 PLN02974, PLN02974, adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Score = 1061 bits (2745), Expect = 0.0
Identities = 420/708 (59%), Positives = 496/708 (70%), Gaps = 32/708 (4%)
Query: 14 RRILLRLFHHSTFHPQPL---DLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSA 70
+L L LPLS P F +W ANT++GKTLVSAGL+++ +S
Sbjct: 1 LHMLRSLIGLRRRSSSSSAAGALPLSCPAFAVWGANTAVGKTLVSAGLAAA-----AASR 55
Query: 71 NKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSILFSSLFAAKSFLSS 130
+Y+KP+QTG+P DSD+RF+F K SLS R SL SN LF S AAKS L
Sbjct: 56 RSPVLYVKPVQTGFPDDSDARFVFRKADSLSRRS---ESLFASNRTLFLSPPAAKSALG- 111
Query: 131 RDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGG 190
+N E ++ S L C TLFAW AVSPHLAA RE G
Sbjct: 112 ------GVSSMGAHAAVNAGAEAGVTS------SALWCHTLFAWRRAVSPHLAARRE-GR 158
Query: 191 VVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFR 250
V D +V+E + + LR+ +E G +L +VETAGGVASPGPSG+LQCDLYRP R
Sbjct: 159 GVSDDEVLEAVNRSLRE----VGANESGGGRVLALVETAGGVASPGPSGTLQCDLYRPLR 214
Query: 251 LPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVL 310
LP ILVGDGRLGGIS T++AYESL LRGYDVVAVV EDHGL NE L+SYL NRVPV VL
Sbjct: 215 LPAILVGDGRLGGISATLAAYESLLLRGYDVVAVVIEDHGLSNEKALLSYLSNRVPVFVL 274
Query: 311 PPLPQDSSNDLMEWFDESHNVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKL 370
PP+P+D +DL EWFD+S + FD+L + + +S R+QRL MPK AGE+ WWPFTQH L
Sbjct: 275 PPVPEDPGDDLDEWFDDSKSTFDALLDALQSWHSGRLQRLQSMPKEAGEVLWWPFTQHAL 334
Query: 371 VPEEAVTVIDSRCGENFSVYQDQKN--KFIGQQFDACASWWTQGPDATLQIELARDMGYT 428
VP ++VTVIDSRCGE+FSVY+ + N I QQFDACASWWTQGPD TLQ ELAR + Y
Sbjct: 335 VPRDSVTVIDSRCGEDFSVYKPKTNSTCSIVQQFDACASWWTQGPDPTLQPELARAVAYA 394
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
A R+GHVMFPENV+EPAL AELLL G GKGWASR +FSDNGSTAIE+ALKMAFRKF D
Sbjct: 395 AGRYGHVMFPENVHEPALRAAELLLGGPGKGWASRVFFSDNGSTAIEVALKMAFRKFIVD 454
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548
H L + + IELKVLAL GSYHGDTLGAMEAQAPS +TGFLQQPWYSGRGLFL
Sbjct: 455 HGFLENSGNEKRGGDLIELKVLALDGSYHGDTLGAMEAQAPSVFTGFLQQPWYSGRGLFL 514
Query: 549 DPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNL 608
DPPTV M N +W +SLPE S + ++ T+ SRDE+F + RDS+ LA Y SYI Q L
Sbjct: 515 DPPTVGMRNGRWNISLPEGFSSGLEG-EETTWESRDEVFDKTRDSTPLAKAYRSYIEQQL 573
Query: 609 LQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR 668
+ +G I ALIIEPV+H AGGM ++DPLFQR LV+ C++RKIPVIFDEVFTG WR
Sbjct: 574 DEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWR 633
Query: 669 LGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSK 716
LGVE+ +LLGC PDIACY KLLTGG++PLAATLAT VF++F G SK
Sbjct: 634 LGVESAWELLGCKPDIACYAKLLTGGLVPLAATLATEEVFEAFRGPSK 681
|
Length = 817 |
| >gnl|CDD|233000 TIGR00508, bioA, adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Score = 192 bits (490), Expect = 2e-54
Identities = 100/366 (27%), Positives = 152/366 (41%), Gaps = 82/366 (22%)
Query: 362 WWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWT--QG---PDAT 416
W P+TQ K I+ E +Y + ++I D +SWW G P
Sbjct: 2 WHPYTQMKD--ALPPLPIER--AEGVYLYDEDGREYI----DGISSWWVNIHGHNHP--- 50
Query: 417 LQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEI 476
E+ + + HVMF +EPA+E AE L++ +G + +FSD+GS A+E+
Sbjct: 51 ---EINAAIKEQLDKLEHVMFGGLTHEPAIELAERLVEITPEGLE-KVFFSDSGSVAVEV 106
Query: 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS----PY 532
ALKMA + + + K + LA + YHGDT GAM +
Sbjct: 107 ALKMALQYW----------QNQGRPGK---TRFLAFRNGYHGDTFGAMSVGDVGGFHALF 153
Query: 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592
L VF + C + + +
Sbjct: 154 EPLL-------------FEVVF------------------IPAPPCYRCWDPD----DCE 178
Query: 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN 652
+ LA++ + LL+ + I A I+EP+V AGGM P + R L + C
Sbjct: 179 AECLAAL------EALLEEHADE----IAAFIVEPLVQGAGGMRFYPPEYLRKLRELCDE 228
Query: 653 RKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV 712
+ +I DE+ TGF R G + G PDI C K LTGG +PLAATL T+ ++++F
Sbjct: 229 YGVLLIADEIATGFGRTGKLFACEHAGVTPDILCLSKGLTGGYLPLAATLTTDEIYEAFY 288
Query: 713 GDSKKR 718
D + +
Sbjct: 289 SDDEGK 294
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 417 |
| >gnl|CDD|235656 PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 186 bits (476), Expect = 2e-52
Identities = 102/372 (27%), Positives = 145/372 (38%), Gaps = 101/372 (27%)
Query: 362 WWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIEL 421
W P+TQ KL I E +Y + I DA +SWW AT
Sbjct: 13 WHPYTQMKL--HPPPIPIVR--AEGAYLYLADGRELI----DAISSWWV----ATH---- 56
Query: 422 ARDMGY-----------TAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNG 470
G+ R HV+F +EPA A+ L+ G +FSD+G
Sbjct: 57 ----GHNHPYIDQAIREQLDRLDHVIFAGFTHEPAERLAQRLVALTPGGL-DHVFFSDSG 111
Query: 471 STAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM----EA 526
S A+E+ALKMA + + + + + L+L+G YHGDT+G M
Sbjct: 112 SVAVEVALKMALQYW----------RNRGEPGRS---RFLSLRGGYHGDTIGTMSVGDRG 158
Query: 527 QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEI 586
+ YT L + + P D
Sbjct: 159 GMHALYTPLLFEQ------VTAPFP-------------------------------PDG- 180
Query: 587 FYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRIL 646
YE+ L ++ + +G I A I+EP+V AGGM DP + L
Sbjct: 181 -YEQATLDALEALLEKH-------------AGEIAAFIVEPLVQGAGGMLFYDPRYLAEL 226
Query: 647 VKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNA 706
+ C + +IFDE+ TGF R G + G PDI C K LTGG +PLAATL T
Sbjct: 227 RRICDRHGVLLIFDEIATGFGRTGTLFACEQAGVSPDIMCLSKGLTGGYLPLAATLCTAE 286
Query: 707 VFDSFVGDSKKR 718
+F++F D + +
Sbjct: 287 IFEAFYSDDRAK 298
|
Length = 423 |
| >gnl|CDD|223239 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 165 bits (420), Expect = 2e-44
Identities = 94/365 (25%), Positives = 146/365 (40%), Gaps = 73/365 (20%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATL--- 417
W PFTQ + P VI E + +++ D + W
Sbjct: 13 LWHPFTQMRD-PLAEPRVIVR--AEGVYLTDIDGRRYL----DGMSGLWC----VNHGHG 61
Query: 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIA 477
+ E+A + + HVMF +EPA+E AE L + +G +F+D+GS A+E A
Sbjct: 62 RPEIAEAIKKQLDKLPHVMFGGFTHEPAIELAEKLAELAPEGGLDHVFFTDSGSEAVETA 121
Query: 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM-----EAQAPSPY 532
LKMA + + + ++ K ++ + YHGDTLGAM A + Y
Sbjct: 122 LKMALQYW----------RARGQPQRK---KFISRRNGYHGDTLGAMSVGGPVALRHAFY 168
Query: 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592
L L L P + E+
Sbjct: 169 DPLLP------EVLHLPAPYAYRRGFFG-EGDEEFA----------------------EA 199
Query: 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN 652
+ +L ++ I ++ + I A I+EPVV AGGM + P + + + + C
Sbjct: 200 ADELEAL----ILEHGPET--------IAAFIVEPVVGGAGGMLVPPPGYLKRVREICDK 247
Query: 653 RKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV 712
I +I DEV TGF R G + G VPDI C K LTGG +PL+A L ++ ++++F
Sbjct: 248 YGILLIADEVATGFGRTGKMFACEHAGIVPDILCLAKGLTGGYLPLSAVLTSDRIYEAFS 307
Query: 713 GDSKK 717
Sbjct: 308 DGDAG 312
|
Length = 449 |
| >gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 1e-31
Identities = 81/322 (25%), Positives = 129/322 (40%), Gaps = 81/322 (25%)
Query: 395 NKFIGQQFDACASWWTQG-----PDATLQIELARDMGYTAARFGHVMFPENVYEPALECA 449
N+++ D + P E+ + A+ H EPA+E A
Sbjct: 36 NRYL----DFLSGIGVLNLGHNHP------EVVEALKEQLAKLTHFSLGFFYNEPAVELA 85
Query: 450 ELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKV 509
ELLL +G + +F ++G+ A+E ALK+A R ++ G+ K+
Sbjct: 86 ELLLALTPEG-LDKVFFVNSGTEAVEAALKLA-RAYT----------GRK--------KI 125
Query: 510 LALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLY 569
++ +G+YHG TLGA+ Y RG F LP L+
Sbjct: 126 ISFEGAYHGRTLGALSLTGSKKY-----------RGGFGPL-------------LPGVLH 161
Query: 570 SKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVV 629
+ + R + DL ++ + L+ +V A+I+EP+
Sbjct: 162 --------VPYPYRY--RPPAELADDLEAL------EEALEEHPEEV----AAVIVEPIQ 201
Query: 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGK 689
GG+ + P + + L + C+ I +I DEV TGF R G + G PDI GK
Sbjct: 202 -GEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLGK 260
Query: 690 LLTGGVIPLAATLATNAVFDSF 711
L GG+ PL A L + D+F
Sbjct: 261 GLGGGL-PLGAVLGREEIMDAF 281
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. Length = 413 |
| >gnl|CDD|236336 PRK08742, PRK08742, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 1e-31
Identities = 106/371 (28%), Positives = 165/371 (44%), Gaps = 67/371 (18%)
Query: 355 KRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQ--- 411
+R + W P TQ + P V +R GE + +++ DA +SWWT
Sbjct: 25 QRDLAVLWHPCTQMREHPHTLPLVPIAR-GEGAWLVGHDGRRYL----DAVSSWWTNLFG 79
Query: 412 GPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL----QGVGKGWASRAYFS 467
+ + +A A VM +EPA++ AE LL + G+ S+ +++
Sbjct: 80 HAEPRIGAAIAAQ----AGELEQVMLAGFTHEPAVQLAEQLLAIAPRQDGRAPLSKVFYA 135
Query: 468 DNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQ 527
DNGS +E+ALKMAF F E + T + +AL+ YHG+T+GA+
Sbjct: 136 DNGSAGVEVALKMAFHYFHNRGE------HRRT-------RFIALENGYHGETIGALAVG 182
Query: 528 APSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIF 587
D P +Y + L E L++ S D
Sbjct: 183 ---------------------DIP---LYRRVYAPLLLESLFAP----------SPDAYL 208
Query: 588 YEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILV 647
E S++ ++ ++ Q L + + G I ALI+EP + AGGM M P + R
Sbjct: 209 AEPGQSAEDYALQAADALQALFE----QSPGEICALILEPRLQCAGGMRMHHPAYLRRAR 264
Query: 648 KECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAV 707
+ C +I DE+ TGF R G + G +PD+ C K LTGG +PL+A LAT +
Sbjct: 265 ELCDAHGAFLIADEIATGFGRTGTLFACEQAGVMPDLLCLSKGLTGGFLPLSAVLATQQL 324
Query: 708 FDSFVGDSKKR 718
+D+F+ DS++R
Sbjct: 325 YDAFLDDSRER 335
|
Length = 472 |
| >gnl|CDD|201078 pfam00202, Aminotran_3, Aminotransferase class-III | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 6e-31
Identities = 82/333 (24%), Positives = 122/333 (36%), Gaps = 75/333 (22%)
Query: 384 GENFSVYQDQKNKFIGQQFDACASWWT--QG---PDATLQIELARDMGYTAARFGHVMFP 438
+ +Y +++ D + G P ++ + + A + H F
Sbjct: 5 AKGVWLYDVDGRRYL----DFLSGIAVVNLGHCHP------KIVQAVKEQADKLTHTSFR 54
Query: 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498
EPAL+ AE L Q G R +F ++GS A E A+K+A +
Sbjct: 55 AFTTEPALQLAEKLAQLTPGG-LDRVFFMNSGSEANETAIKLARQYAKKKGA-------- 105
Query: 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558
T K K++A G +HG TLGA+ S Y G G L
Sbjct: 106 --TGKT---KIIAFSGGFHGRTLGALSVTGSSGY--------KKGFGPSLP--------- 143
Query: 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSG 618
+ LP E +LA + + +
Sbjct: 144 -GVYFLP--------------------YPDLEAAEEELACADEALRLIKAVHDDN----- 177
Query: 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678
I A+I+EP+ GG+ P F L + C+ + +I DEV TGF R G +
Sbjct: 178 -IAAVIVEPI-QGEGGVVPPPPGFLAGLREICKKHGVLLIADEVQTGFGRTGKLFACEHY 235
Query: 679 GCVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
G PDI K LTGG +PL+A LAT + +F
Sbjct: 236 GVTPDIMTLAKALTGG-LPLSAVLATAEIMQAF 267
|
Length = 338 |
| >gnl|CDD|180800 PRK07030, PRK07030, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (304), Expect = 5e-29
Identities = 102/358 (28%), Positives = 153/358 (42%), Gaps = 69/358 (19%)
Query: 362 WWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQ--GPDATLQI 419
W P TQ K E + +I R GE + + +++ DA +SWW G A +I
Sbjct: 16 WHPCTQMK--DHEQLPLIPIRRGEGVWLEDFEGKRYL----DAVSSWWVNVFG-HANPRI 68
Query: 420 ELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479
+ + HV+ +EP +E +E L++ G SR +++DNGS+AIE+ALK
Sbjct: 69 NQR--IKDQVDQLEHVILAGFSHEPVIELSERLVKITPPG-LSRCFYADNGSSAIEVALK 125
Query: 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQP 539
M+F + + K + + L SYHG+TL AM + +T
Sbjct: 126 MSFHYW----------RNRGKPRK---KRFVTLTNSYHGETLAAMSVGDVALFTE----- 167
Query: 540 WYSGRGLFLDPPTVFMYNSKWILSLPE---WLYSKIVEHKDITFCSRDEIFYEERDSSDL 596
+ + L LD V S PE W EH F ++ E D
Sbjct: 168 --TYKPLLLDTIKV---PSPDCYLRPEGMSW-----EEHSRRMFAHMEQTLAEHHDE--- 214
Query: 597 ASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656
I A+I+EP++ AGGM M P++ ++L + C +
Sbjct: 215 -----------------------IAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVH 251
Query: 657 VIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD 714
+I DE+ GF R G + G PD C K LTGG +PLAA L T+ V+ +F D
Sbjct: 252 LIHDEIAVGFGRTGTMFACEQAGIRPDFLCLSKALTGGYLPLAAVLTTDTVYQAFYDD 309
|
Length = 466 |
| >gnl|CDD|180174 PRK05630, PRK05630, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 4e-28
Identities = 90/320 (28%), Positives = 122/320 (38%), Gaps = 84/320 (26%)
Query: 403 DACASWWTQG---------PDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453
DA +SWW+ A QI+ HVMF +EPA++ LL
Sbjct: 44 DAMSSWWSAAHGHGHPRLKAAAHKQID----------TMSHVMFGGLTHEPAIKLTRKLL 93
Query: 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALK 513
G ++SD+GS ++E+A+KMA ++S G+ E+ ++L +
Sbjct: 94 NLTDNGL-DHVFYSDSGSVSVEVAIKMAL-QYS---------KGQGHPERT---RLLTWR 139
Query: 514 GSYHGDTLGAMEAQAPSPYTGFLQQPWYSGR---GLFLDPPTVFMYNSKWILSLPEWLYS 570
YHGDT AM P G + W G +F P P
Sbjct: 140 SGYHGDTFAAMSVCDPE---GGMHSLW-KGTLPEQIFAPAP-------------PVR--- 179
Query: 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630
S EI S L S+ I + + A+IIEP+V
Sbjct: 180 ---------GSSPQEI------SEYLRSL-ELLIDET------------VAAIIIEPIVQ 211
Query: 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKL 690
AGGM D + C I +I DE+ TGF R G G PDI C GK
Sbjct: 212 GAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELFATLAAGVTPDIMCVGKA 271
Query: 691 LTGGVIPLAATLATNAVFDS 710
LTGG + AATL T+ V
Sbjct: 272 LTGGFMSFAATLCTDKVAQL 291
|
Length = 422 |
| >gnl|CDD|180441 PRK06173, PRK06173, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 2e-27
Identities = 101/327 (30%), Positives = 144/327 (44%), Gaps = 89/327 (27%)
Query: 399 GQQF-DACASWWTQGPDATLQIELARDMGYTAARF-----------GHVMFPENVYEPAL 446
G++ D +SWW A L GY R H+MF +EPA+
Sbjct: 43 GRRLIDGMSSWW-----AALH-------GYNHPRLNAAATNQLAKMSHIMFGGFTHEPAV 90
Query: 447 ECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIE 506
E A+ LL+ + ++ +F+D+GS A+E+A+KMA + + K ++
Sbjct: 91 ELAQKLLEILPPS-LNKIFFADSGSVAVEVAMKMALQ---YQQ-------AKGEVQRT-- 137
Query: 507 LKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE 566
K ++ YHGDT AM P TG GLF SLP
Sbjct: 138 -KFATIRSGYHGDTWHAM--SVCDPVTGM--------HGLFNH-------------SLP- 172
Query: 567 WLYSKIVEHKDITFCSRDEI-FYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII 625
V++ F + I F EE + + + Q+LL+ G + I ALI+
Sbjct: 173 ------VQY----FLPQPSIKFGEEWNDEAIEPL------QDLLEQKGDE----IAALIL 212
Query: 626 EPVVHAAGGMHMVDPLFQRILVKE---CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVP 682
EPVV AGGM+ P + LVK C + +IFDE+ TGF R G + G VP
Sbjct: 213 EPVVQGAGGMYFYSPTY---LVKARELCDQYGVLLIFDEIATGFGRTGKLFALEHAGVVP 269
Query: 683 DIACYGKLLTGGVIPLAATLATNAVFD 709
DI C GK LTGG + L+AT+ T A+
Sbjct: 270 DIMCIGKALTGGYLTLSATITTEAIAQ 296
|
Length = 429 |
| >gnl|CDD|181189 PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 5e-27
Identities = 92/324 (28%), Positives = 132/324 (40%), Gaps = 91/324 (28%)
Query: 403 DACASWWTQGPDATLQ----IELARDMGYTAARFGHVMFPENVYEPALE-CAELL----- 452
D +SWW A + +L M HVMF + PA+E C +L+
Sbjct: 47 DGMSSWW-----AAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHPPAIELCRKLVAMTPQ 101
Query: 453 -LQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLA 511
L+ V + +D+GS A+E+A+KMA + + E + L
Sbjct: 102 PLECV--------FLADSGSVAVEVAMKMALQYWQAKGEP--------------RQRFLT 139
Query: 512 LKGSYHGDTLGAMEAQAP-----SPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE 566
L+ YHGDT GAM P S Y G+L + LF P
Sbjct: 140 LRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPE------NLFAPAPQ-------------- 179
Query: 567 WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIE 626
SR F E D D+A ++ ++ + I A+I+E
Sbjct: 180 ---------------SR---FDGEWDERDIAP-FARLMAAH---------RHEIAAVILE 211
Query: 627 PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC 686
P+V AGGM + P + + + K C I +I DE+ TGF R G + G PDI C
Sbjct: 212 PIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFACEHAGIAPDILC 271
Query: 687 YGKLLTGGVIPLAATLATNAVFDS 710
GK LTGG + L+ATL T V ++
Sbjct: 272 LGKALTGGTMTLSATLTTREVAET 295
|
Length = 428 |
| >gnl|CDD|180746 PRK06916, PRK06916, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 4e-26
Identities = 98/388 (25%), Positives = 159/388 (40%), Gaps = 80/388 (20%)
Query: 334 SLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQ 393
S + Y E ++ W PFTQ K EE +I+ GE +Y
Sbjct: 4 STTDKPSYTYEELSEK-------NKAYVWHPFTQMKDYLEEDPLIIER--GEGRKLYDVN 54
Query: 394 KNKFIGQQFDACASWWT-----QGP--DATLQIELARDMGYTAARFGHVMFPENVYEPAL 446
N++ +D +S W Q P D ++ +L + T +V P++
Sbjct: 55 GNEY----YDGVSSIWLNVHGHQVPELDEAIREQLNKIAHSTLLGLANV--------PSI 102
Query: 447 ECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIE 506
AE L++ V +G + ++SD+G+TA+EIA+KMAF+ + GK ++ +
Sbjct: 103 LLAEKLIEVVPEG-LKKVFYSDSGATAVEIAIKMAFQYWQ--------NKGKPKKQRFV- 152
Query: 507 LKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE 566
LK +YHGDT+GA+ A LF + ++ + + P
Sbjct: 153 ----TLKNAYHGDTIGAVSVGAID---------------LFHQVYSSLLFEA-IKMPYPY 192
Query: 567 WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIE 626
S K + E + LL+ +++ I +E
Sbjct: 193 TYRSPYGNDKAEI---VKKHLEELEE---------------LLKEKHEEIAAII----VE 230
Query: 627 PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC 686
P+V AGGM + + + L C + I DEV TGF R G + PDI
Sbjct: 231 PLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMFACEHENVTPDIMT 290
Query: 687 YGKLLTGGVIPLAATLATNAVFDSFVGD 714
GK LTGG +P+A T+ T+ ++++F GD
Sbjct: 291 AGKGLTGGYLPIAITVTTDEIYNAFYGD 318
|
Length = 460 |
| >gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.8 bits (234), Expect = 3e-20
Identities = 69/290 (23%), Positives = 102/290 (35%), Gaps = 65/290 (22%)
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
A+ H + YEP +E AE L + +F ++G+ A+E A+K+A R ++
Sbjct: 85 LAKLNHTHTRDLYYEPYVELAEKLTALAPGSGLKKVFFGNSGAEAVEAAIKIA-RAYTGR 143
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548
V+A G++HG TLGA+ P P+ +G G
Sbjct: 144 P------------------GVIAFDGAFHGRTLGALSLTGSKP-------PYKAGFGPLP 178
Query: 549 DPPTVFMY-NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQN 607
Y N + D +F E ++A
Sbjct: 179 PGVYHVPYPNPY----RCPFGIGGEECGDDALEYIERALFDLEVGPEEVA---------- 224
Query: 608 LLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFW 667
A+IIEP+ G + + L K C+ I +I DEV TGF
Sbjct: 225 --------------AIIIEPIQGEGGIIVPPKGFLKA-LRKLCREHGILLIADEVQTGFG 269
Query: 668 RLG----VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713
R G E G PDI K L GG +PL+A + + D G
Sbjct: 270 RTGKMFAFEHF----GVEPDIVTLAKSLGGG-LPLSAVVGRAEIMDWPPG 314
|
Length = 447 |
| >gnl|CDD|222178 pfam13500, AAA_26, AAA domain | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 2e-17
Identities = 54/175 (30%), Positives = 77/175 (44%), Gaps = 34/175 (19%)
Query: 155 ISGEEDSSVSELVCKTL-----------FAWEEAVSPHLAAERESGGVVGD-SKVIETLG 202
SG D SELV + L + +SPHLAA E GV D K+++ L
Sbjct: 38 QSGLVDDGDSELVKRLLGLDQTREHPEPYRLSAPLSPHLAARLE--GVTIDLEKIVKKLP 95
Query: 203 KCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLG 262
K + L +VE AGG+ P L D+ LP ILV G LG
Sbjct: 96 KDA---------------DPL-VVEGAGGLMVPLNENLLNIDIAANLGLPVILVARGGLG 139
Query: 263 GISGTISAYESLKLRGYDVVAVVF-EDHGLVNEVPLMSYLRNRVPVL-VLPPLPQ 315
I+ T+ E+L+ RG +++ V+ N + ++ + VPVL V+P LP
Sbjct: 140 TINHTLLTIEALRSRGINILGVILNGVPNPANVEAIEAF--SGVPVLGVIPYLPD 192
|
This domain is found in a number of proteins involved in cofactor biosynthesis such as dethiobiotin synthase and cobyric acid synthase. This domain contains a P-loop motif. Length = 197 |
| >gnl|CDD|227325 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 9e-17
Identities = 76/291 (26%), Positives = 113/291 (38%), Gaps = 95/291 (32%)
Query: 429 AARFGHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
A + HV N++ EP E AE L++ +A R +F ++G+ A E ALK+A RK++
Sbjct: 71 AEKLWHV---SNLFYNEPQAELAEKLVELSP--FADRVFFCNSGAEANEAALKLA-RKYT 124
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGL 546
D E + K++A + S+HG TLGA+ A TG QP Y
Sbjct: 125 GDPE---------------KSKIIAFENSFHGRTLGALSA------TG---QPKYRKGFG 160
Query: 547 FLDPPTVFM-YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYIS 605
L P + +N D+ ++ + I
Sbjct: 161 PLLPGFRHVPFN-------------------------------------DIEAL-EAAID 182
Query: 606 QNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG 665
++ A+I+EP+ GG+ P F + L + C +I DEV TG
Sbjct: 183 ED------------TAAVIVEPI-QGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTG 229
Query: 666 FWRLGVETTADLLGC-----VPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
R T L PDI K L GG P+ A LAT + +F
Sbjct: 230 LGR-----TGKLFAYEHYGVEPDILTLAKALGGGF-PIGAMLATEEIASAF 274
|
Length = 404 |
| >gnl|CDD|168967 PRK07481, PRK07481, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 2e-16
Identities = 75/285 (26%), Positives = 116/285 (40%), Gaps = 62/285 (21%)
Query: 437 FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496
F + A+E + L+ R +FS GS ++E ALK+A R++ +V
Sbjct: 80 FDGTTHPRAIELSYELIDMFAPEGMRRVFFSSGGSDSVETALKLA-RQY---WKVR---- 131
Query: 497 GK-DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY-TGFLQQPWYSGRGLFLDPPTVF 554
G+ + T K ++LK YHG G + + + +P G T +
Sbjct: 132 GQPERT------KFISLKQGYHGTHFGGASVNGNTVFRRNY--EPLLPG---CFHVETPW 180
Query: 555 MYNSKWILSLPEWLYSKIVEHKDITFCSR---DEIFYEERDSSDLASIYSSYISQNLLQN 611
+Y + + PE ++ C+R EI ++ D+
Sbjct: 181 LYRNPFTEQDPE----ELARI-----CARLLEREIAFQGPDT------------------ 213
Query: 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKE-CQNRKIPVIFDEVFTGFWRLG 670
I A I EPV AGG+ +V P LV+E C I +I DEV TGF R G
Sbjct: 214 --------IAAFIAEPV-QGAGGV-IVPPANFWPLVREVCDRHGILLIADEVVTGFGRTG 263
Query: 671 VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS 715
+ G PDI C K +T G +PL AT+ + D+F ++
Sbjct: 264 SWFGSRGWGVKPDIMCLAKGITSGYVPLGATMVNARIADAFEANA 308
|
Length = 449 |
| >gnl|CDD|235056 PRK02627, PRK02627, acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 78.2 bits (194), Expect = 2e-15
Identities = 71/278 (25%), Positives = 106/278 (38%), Gaps = 80/278 (28%)
Query: 440 NVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497
N+Y EP E AE L V + +F ++G+ A E A+K+A RK+ H+
Sbjct: 76 NLYYIEPQEELAEKL---VELSGMDKVFFCNSGAEANEAAIKLA-RKYG--HKKG----- 124
Query: 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557
+ +++ + S+HG TL + A TG QP Y + F F+Y
Sbjct: 125 ------IEKPEIITAENSFHGRTLATLSA------TG---QPKY--QEGFEPLVEGFIY- 166
Query: 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVS 617
V DI ++ + ++
Sbjct: 167 ---------------VPFNDI------------------EALKA-------------AIT 180
Query: 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
A+++EP+ GG++ D + + L + C I +I DEV TG R G
Sbjct: 181 DKTAAVMLEPI-QGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAYQH 239
Query: 678 LGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV-GD 714
G PDI K L GGV P+ A LA V D F GD
Sbjct: 240 YGIEPDIMTLAKGLGGGV-PIGAVLAKEKVADVFTPGD 276
|
Length = 396 |
| >gnl|CDD|233098 TIGR00707, argD, transaminase, acetylornithine/succinylornithine family | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 5e-14
Identities = 80/290 (27%), Positives = 114/290 (39%), Gaps = 85/290 (29%)
Query: 429 AARFGHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
+ HV N+Y EP E AE L V A R +F ++G+ A E ALK+A RK++
Sbjct: 56 LEKLVHV---SNLYYTEPQEELAEKL---VEHSGADRVFFCNSGAEANEAALKLA-RKYT 108
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGL 546
G EK K++A + S+HG T+GA+ A Y Q+ +
Sbjct: 109 ----------GDKGKEKK---KIIAFENSFHGRTMGALSATGQPKY----QKGFEP---- 147
Query: 547 FLDPPTVFM-YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYIS 605
L P + YN E L I +
Sbjct: 148 -LVPGFSYAPYND------IESLKKAIDDE------------------------------ 170
Query: 606 QNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG 665
A+I+EP+ GG++ F + L + C+++ +IFDEV TG
Sbjct: 171 --------------TAAVIVEPI-QGEGGVNPASAEFLKALREICKDKDALLIFDEVQTG 215
Query: 666 FWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF-VGD 714
R G + G PDI K L GGV P+ ATLA V ++F GD
Sbjct: 216 IGRTGKFFAYEHYGIEPDIITLAKGLGGGV-PIGATLAKEEVAEAFTPGD 264
|
This family of proteins, for which ornithine aminotransferases form an outgroup, consists mostly of proteins designated acetylornithine aminotransferase. However, the two very closely related members from E. coli are assigned different enzymatic activities. One is acetylornithine aminotransferase (EC 2.6.1.11), ArgD, an enzyme of arginine biosynthesis, while another is succinylornithine aminotransferase, an enzyme of the arginine succinyltransferase pathway, an ammonia-generating pathway of arginine catabolism (See MEDLINE:98361920). Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097). Length = 379 |
| >gnl|CDD|181707 PRK09221, PRK09221, beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 2e-13
Identities = 40/95 (42%), Positives = 57/95 (60%), Gaps = 5/95 (5%)
Query: 620 IGALIIEPVVHAAGGMHMVDP--LFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
I A+I+EP+ +AG + V P QR L + C I +IFDEV TGF RLG A+
Sbjct: 219 IAAVIVEPMAGSAGVL--VPPKGYLQR-LREICDKHGILLIFDEVITGFGRLGAAFAAER 275
Query: 678 LGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV 712
G PDI + K LT G IP+ A +A++ ++D+F+
Sbjct: 276 FGVTPDIITFAKGLTNGAIPMGAVIASDEIYDAFM 310
|
Length = 445 |
| >gnl|CDD|183999 PRK13360, PRK13360, omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 4e-13
Identities = 36/94 (38%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
I A+I+EPV + G + QR L + C I +IFDEV TGF RLG A G
Sbjct: 216 IAAVIVEPVAGSTGVLIPPKGYLQR-LREICDKHGILLIFDEVITGFGRLGAPFAAQYFG 274
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713
PD+ K LT G IP+ A ++ + D+F+
Sbjct: 275 VTPDLLTCAKGLTNGAIPMGAVFVSSEIHDAFMQ 308
|
Length = 442 |
| >gnl|CDD|235884 PRK06917, PRK06917, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 3e-12
Identities = 73/268 (27%), Positives = 109/268 (40%), Gaps = 57/268 (21%)
Query: 443 EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTE 502
EPA + A+ L G + ++F ++GS A E A+K+A + F +
Sbjct: 74 EPAEKLAKKLSDLSP-GDLNWSFFVNSGSEANETAMKIAIQHFQ----------ERGIQG 122
Query: 503 KCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWIL 562
K K+L+ SYHG T+GA+ +G + L D PT+
Sbjct: 123 KH---KILSRWMSYHGITMGALS------MSGHPLRR-QRFVSLLEDYPTI--------- 163
Query: 563 SLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGA 622
S P +C R + + LA + ++ G + I A
Sbjct: 164 SAP--------------YCYRCP-VQKVYPTCQLACATEL---ETAIERIG---AEHIAA 202
Query: 623 LIIEPVVHAAGGMHMVDP--LFQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
I EP++ AAG +V P ++ I KE C + I I DEV TG R G + G
Sbjct: 203 FIAEPIIGAAGAA-VVPPKGYYKVI--KEICDHYDILFIADEVMTGLGRTGAMFAMEHWG 259
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAV 707
PDI GK L G P+AAT+ ++ V
Sbjct: 260 VEPDIMTLGKGLGAGYTPIAATVVSDRV 287
|
Length = 447 |
| >gnl|CDD|235894 PRK06943, PRK06943, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 5e-12
Identities = 38/102 (37%), Positives = 54/102 (52%)
Query: 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD 676
+G I ALI+EP+V A GM M DP + R L C + +I DE+ G R G +
Sbjct: 219 AGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFFACE 278
Query: 677 LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKKR 718
G PD C K ++GG +PL+ L+ +A+F +F D R
Sbjct: 279 QAGVWPDFLCLSKGISGGYLPLSLVLSRDAIFAAFYDDDVTR 320
|
Length = 453 |
| >gnl|CDD|235599 PRK05769, PRK05769, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 6e-12
Identities = 69/283 (24%), Positives = 118/283 (41%), Gaps = 70/283 (24%)
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
A +F H + YEPA+E AE L++ G+ + +F+++G+ + E A+K+A ++
Sbjct: 83 AEKFLHYSLTDFYYEPAVELAERLVEIAPGGFEKKVFFTNSGTESNEAAIKIA--RYHTG 140
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548
+ ++ FLG ++HG T G++ A P +Q+ +G F
Sbjct: 141 RKYIIAFLG-----------------AFHGRTYGSLSLTASKP----VQR-----KGFFP 174
Query: 549 DPPTVFM------YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSS 602
P V Y + W + PE + +++ + D +F + ++A
Sbjct: 175 LMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIE------DYLFKKLVPPEEVA----- 223
Query: 603 YISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDP--LFQRILVKECQNRKIPVIFD 660
A+I+EP+ GG ++V P F+ L K I +I D
Sbjct: 224 -------------------AIIVEPI-QGEGG-YVVPPKNFFKE-LRKLADKYGILLIDD 261
Query: 661 EVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLA 703
EV TG R G + G PDI K + GG +PL A +
Sbjct: 262 EVQTGMGRTGKMFAIEHFGVEPDIITLAKAIAGG-LPLGAVIG 303
|
Length = 441 |
| >gnl|CDD|181234 PRK08117, PRK08117, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 8e-12
Identities = 73/270 (27%), Positives = 109/270 (40%), Gaps = 61/270 (22%)
Query: 438 PENV--YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDF 495
P V YE L+ AE L + G +FS++G+ AIE ALK+A
Sbjct: 79 PSGVIYYESILKLAEEL-AEITPGGLDCFFFSNSGAEAIEGALKLA-------------- 123
Query: 496 LGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAP-SPYTGFLQQPWYSGRGLFLDPPTVF 554
K T++ +++ G +HG TLGA+ S Y + QP L
Sbjct: 124 --KHVTKR---PYIISFTGCFHGRTLGALSVTTSKSKYRKY-YQP--------LLGSVYQ 169
Query: 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614
P + + +D C + + DL S++ ++
Sbjct: 170 ---------APYPYCDRCPKGEDPEVCFLECL-------RDLESLFKHQVTPEE------ 207
Query: 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT 674
+ A+IIEPV+ GG + F + L + C I +IFDEV TGF R G
Sbjct: 208 -----VAAVIIEPVL-GEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFA 261
Query: 675 ADLLGCVPDIACYGKLLTGGVIPLAATLAT 704
A G VPDI K + G +PL+A +A+
Sbjct: 262 AQTFGVVPDIMTIAKGIASG-LPLSAVVAS 290
|
Length = 433 |
| >gnl|CDD|180390 PRK06082, PRK06082, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 5e-11
Identities = 70/265 (26%), Positives = 102/265 (38%), Gaps = 70/265 (26%)
Query: 443 EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTE 502
E A+ECAE L + G G +R F+ G++AI +ALK+A R + +
Sbjct: 113 ETAIECAEKLTEIAG-GELNRVLFAPGGTSAIGMALKLA-RHITGNF------------- 157
Query: 503 KCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWIL 562
KV++L S+HG +L A+ G F M
Sbjct: 158 -----KVVSLWDSFHGASLDAISV---------------GGEACFRQGMGPLMAG----- 192
Query: 563 SLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI-YSSYISQNLLQNPGLKVSGCIG 621
VE R + + D SD+ Y Y+ ++ G IG
Sbjct: 193 ----------VERIPPAVSYRG--AFPDADGSDVHYADYLEYV---------IEKEGGIG 231
Query: 622 ALIIEPVVHAAGGMHMVDP--LFQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLL 678
A I E V + V ++R V+E C + +I DE+ G R G T
Sbjct: 232 AFIAEAVRNTD---VQVPSKAYWKR--VREICDKHNVLLIIDEIPNGMGRTGEWFTHQAY 286
Query: 679 GCVPDIACYGKLLTGGVIPLAATLA 703
G PDI C GK L GG++P+AA +
Sbjct: 287 GIEPDILCIGKGLGGGLVPIAAMIT 311
|
Length = 459 |
| >gnl|CDD|234625 PRK00090, bioD, dithiobiotin synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 1e-10
Identities = 52/182 (28%), Positives = 77/182 (42%), Gaps = 30/182 (16%)
Query: 154 RISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGLESES 213
R+SG E V + +EE +SPHLAA E GV D +E + LR L +
Sbjct: 55 RLSGLPLDY--EDVN--PYRFEEPLSPHLAAALE--GVAID---LEKISAALRR-LAQQY 104
Query: 214 ESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYES 273
+ L +VE AGG+ P DL + +LP ILV +LG I+ T+ E+
Sbjct: 105 D--------LVLVEGAGGLLVPLTEDLTLADLAKQLQLPVILVVGVKLGCINHTLLTLEA 156
Query: 274 LKLRGYDVVAVVFEDHGLVNEVPL------MSYLRNR--VPVL-VLPPLPQDSSNDLMEW 324
++ RG + V + P ++ L P+L LP L + E+
Sbjct: 157 IRARGLPLAGWVA---NGIPPEPGLRHAENLATLERLLPAPLLGELPYLAEAELAAAAEY 213
Query: 325 FD 326
D
Sbjct: 214 LD 215
|
Length = 222 |
| >gnl|CDD|236149 PRK08088, PRK08088, 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 2e-10
Identities = 74/280 (26%), Positives = 106/280 (37%), Gaps = 63/280 (22%)
Query: 431 RFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHE 490
+ H F YEP LE E + Q V +A + GS A+E A+K+A
Sbjct: 72 KLSHTCFQVLAYEPYLELCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIA--------- 122
Query: 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDP 550
+ T++ V+A G+YHG T + TG + P+ +G GL P
Sbjct: 123 -------RAATKRS---GVIAFTGAYHGRTHYTLA------LTGKVN-PYSAGMGLM--P 163
Query: 551 PTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQ 610
V+ P L+ + E D S + IF + D+A+I
Sbjct: 164 GHVYR------ALYPCPLHG-VSE--DDAIASIERIFKNDAAPEDIAAI----------- 203
Query: 611 NPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG 670
IIEPV GG + P F + L C I +I DEV TG R G
Sbjct: 204 -------------IIEPV-QGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTG 249
Query: 671 VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDS 710
+ +G D+ + K + GG PLA V D+
Sbjct: 250 TLFAMEQMGVAADLTTFAKSIAGG-FPLAGVTGRAEVMDA 288
|
Length = 425 |
| >gnl|CDD|183175 PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 2e-10
Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
+ A+I+EP+ GG+ + + + K C +I DEV TG R G +
Sbjct: 232 VAAVILEPI-QGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHEN 290
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSFV 712
PDI C K L GGV+P+ AT+AT VF
Sbjct: 291 VQPDILCLAKALGGGVMPIGATIATEEVFSVLF 323
|
Length = 459 |
| >gnl|CDD|233100 TIGR00713, hemL, glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 2e-10
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
I +I+EPV AG M +V P F L + +IFDEV TGF R+ + +
Sbjct: 196 IAGVIVEPV---AGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGF-RVALGGAQEY 251
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
G PD+ GK++ GG +P+ A
Sbjct: 252 FGVEPDLTTLGKIIGGG-LPVGA 273
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 423 |
| >gnl|CDD|180994 PRK07480, PRK07480, putative aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 4e-10
Identities = 84/367 (22%), Positives = 134/367 (36%), Gaps = 100/367 (27%)
Query: 364 PFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWT----QGPDATLQI 419
PF+ K + E+ VI E ++ + NK + D A W G
Sbjct: 21 PFSDMKALNEKGSRVITR--AEGVYLWDSEGNKIL----DGMAGLWCVNVGYGRK----- 69
Query: 420 ELARDMGYTAAR---FGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEI 476
ELA D R + + F + + PA+E A L + G+ + +F+++GS A +
Sbjct: 70 ELA-DAAARQMRELPYYNTFF-KTTHPPAIELAAKLAEVAPPGF-NHVFFTNSGSEANDT 126
Query: 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGA--------MEAQA 528
L+M + GK +K + +++ K YHG T+ M Q
Sbjct: 127 VLRMVRHYW--------ALKGK--PQKKV---IISRKNGYHGSTVAGASLGGMKYMHEQG 173
Query: 529 PSPYTGF--LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEI 586
P G + QP++ G G + P ++ L+ L +KI+E
Sbjct: 174 DLPIPGIVHIDQPYWFGEGGDMTPE-------EFGLAAARQLEAKILE------------ 214
Query: 587 FYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD----PLF 642
+ + A I EP+ AGG+ + P
Sbjct: 215 LGADN----------------------------VAAFIGEPI-QGAGGVIIPPATYWPEI 245
Query: 643 QRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATL 702
QRI C+ I ++ DEV GF R G + G PD+ K LT G IP+ A
Sbjct: 246 QRI----CRKYDILLVADEVICGFGRTGEWFGSQHFGIKPDLMTIAKGLTSGYIPMGAVG 301
Query: 703 ATNAVFD 709
+ V +
Sbjct: 302 VGDRVAE 308
|
Length = 456 |
| >gnl|CDD|223080 COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 6e-10
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 618 GCIGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA 675
I A+I+EPV G +V P F L + + +IFDEV TGF R+ +
Sbjct: 199 DDIAAVIVEPVAGNMG---VVPPEPGFLEGLRELTEEHGALLIFDEVITGF-RVALGGAQ 254
Query: 676 DLLGCVPDIACYGKLLTGGVIPLAA 700
G PD+ GK++ GG+ P+ A
Sbjct: 255 GYYGVEPDLTTLGKIIGGGL-PIGA 278
|
Length = 432 |
| >gnl|CDD|181078 PRK07678, PRK07678, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 4e-09
Identities = 73/284 (25%), Positives = 112/284 (39%), Gaps = 75/284 (26%)
Query: 442 YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA--FRKFSFDHEVLVDFLGKD 499
+EPA++ AE L + +G + +FS++GS A E A K+A + +
Sbjct: 88 HEPAIKLAEKLNEWLGGEY--VIFFSNSGSEANETAFKIARQYHAQKGEPH--------- 136
Query: 500 TTEKCIELKVLALKGSYHGDTLGAMEA--QAPSPY------TGFLQQPWYSGRGLFLDPP 551
K ++ +YHG+++GA+ A QA Y GFL P PP
Sbjct: 137 ------RYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVP----------PP 180
Query: 552 TVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611
C R E D DL + I + +
Sbjct: 181 ----------------------------DCYRMPGIESE-DIYDLECV--KEIDRVMTW- 208
Query: 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKE-CQNRKIPVIFDEVFTGFWRLG 670
++S I A+I+EP++ GG+ M + + VKE CQ +I DEV GF R G
Sbjct: 209 ---ELSETIAAVIMEPII-TGGGVLMPPQDYMK-AVKEICQKHGALLISDEVICGFGRTG 263
Query: 671 VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD 714
G PDI K +T +PL+AT ++++F G
Sbjct: 264 KAFGFMNYGVKPDIITMAKGITSAYLPLSATAVKKEIYEAFKGK 307
|
Length = 451 |
| >gnl|CDD|132415 TIGR03372, putres_am_tran, putrescine aminotransferase | Back alignment and domain information |
|---|
Score = 58.9 bits (142), Expect = 4e-09
Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
+ A+I+EP+ GG+ + + + C +I DEV TG R G + G
Sbjct: 225 VAAIILEPI-QGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEG 283
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVF 708
PDI C K L GGV+P+ AT+AT AVF
Sbjct: 284 VQPDILCLAKALGGGVMPIGATIATEAVF 312
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine [Central intermediary metabolism, Polyamine biosynthesis]. Length = 442 |
| >gnl|CDD|235894 PRK06943, PRK06943, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 7e-09
Identities = 48/170 (28%), Positives = 74/170 (43%), Gaps = 35/170 (20%)
Query: 362 WWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQ-----GPD-- 414
W P TQ K E + ++ GE +Y ++ DA +SWW P
Sbjct: 23 WHPCTQMK--HHERLPLLPVARGEGAWLYDRDGRRY----LDAISSWWVNLFGHANPRIN 76
Query: 415 ATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474
A L+ +L D H M +EPA+E AE L G G A+F+ +G++A+
Sbjct: 77 AALKDQL--DT------LEHAMLAGCTHEPAIELAERLAALTG-GTLGHAFFASDGASAV 127
Query: 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM 524
EIALKM+F + + + + + L YHG+T+GA+
Sbjct: 128 EIALKMSFHAWR-------------NRGRGDKREFVCLANGYHGETIGAL 164
|
Length = 453 |
| >gnl|CDD|235687 PRK06062, PRK06062, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 8e-09
Identities = 64/271 (23%), Positives = 100/271 (36%), Gaps = 70/271 (25%)
Query: 447 ECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIE 506
E A L+ + G S+ +F++ G+ A E A++MA R + G+
Sbjct: 99 EAARLIAE-RAPGDLSKVFFTNGGADANEHAVRMA-RLHT----------GRP------- 139
Query: 507 LKVLALKGSYHGDTLGAMEAQA-----PSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWI 561
KVL+ SYHG T A+ P+ +G F P F+Y S++
Sbjct: 140 -KVLSAYRSYHGGTGSAINLTGDPRRWPNDTGR-------AGVVHFFGP---FLYRSEFH 188
Query: 562 LSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIG 621
+ E + + H I E + I
Sbjct: 189 ATTEEEECERALAHL------ERVIELEGPST--------------------------IA 216
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680
A+++E V AG +V P V+E C I +I DEV GF R G + G
Sbjct: 217 AILLESVPGTAG--ILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFAIEHFGV 274
Query: 681 VPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
VPD+ + K + G +PL + A+ +F
Sbjct: 275 VPDLITFAKGVNSGYVPLGGVAISEAIAATF 305
|
Length = 451 |
| >gnl|CDD|235913 PRK07036, PRK07036, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-08
Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG-VETTADLL 678
I A I EP++ +GG+ + P + + + C+ I I DEV TGF RLG + +
Sbjct: 221 IAAFIAEPIL-GSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHFFASEAVF 279
Query: 679 GCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKK 717
G PDI + K LT G PL A + + + D G + K
Sbjct: 280 GIQPDIITFAKGLTSGYQPLGAVIISERLLDVISGPNAK 318
|
Length = 466 |
| >gnl|CDD|234607 PRK00062, PRK00062, glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (139), Expect = 2e-08
Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
I A+I+EPV AG M +V P F L + C +IFDEV TGF R+ +
Sbjct: 198 IAAVIVEPV---AGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGF-RVALGGAQGY 253
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
G PD+ GK++ GG +P+ A
Sbjct: 254 YGVTPDLTTLGKIIGGG-LPVGA 275
|
Length = 426 |
| >gnl|CDD|240281 PTZ00125, PTZ00125, ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 1e-07
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 608 LLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFW 667
LLQ+P + A I+EP+ G+ + D + + + + C+ + +I DE+ TG
Sbjct: 173 LLQDPN------VAAFIVEPI-QGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLG 225
Query: 668 RLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
R G D G PDI GK L+GG+ P++A LA + V
Sbjct: 226 RTGKLLAHDHEGVKPDIVLLGKALSGGLYPISAVLANDDVMLVI 269
|
Length = 400 |
| >gnl|CDD|223210 COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 1e-07
Identities = 44/133 (33%), Positives = 67/133 (50%), Gaps = 18/133 (13%)
Query: 154 RISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGLESES 213
R+SG + S EL+ + ++E +SPHLAAE E G + +E L + LR L+
Sbjct: 58 RLSGLDLSY--ELIN--PYRFKEPLSPHLAAELE-----GRTIDLEKLSQGLRQLLK--- 105
Query: 214 ESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYES 273
K +++ +VE AGG+ P DL +LP ILV +LG I+ T+ E+
Sbjct: 106 -----KYDLV-LVEGAGGLLVPLTEEYTFADLAVQLQLPVILVVGIKLGTINHTLLTVEA 159
Query: 274 LKLRGYDVVAVVF 286
L+ RG + V
Sbjct: 160 LRARGLPLAGWVA 172
|
Length = 223 |
| >gnl|CDD|129783 TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 1e-07
Identities = 69/282 (24%), Positives = 106/282 (37%), Gaps = 57/282 (20%)
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
A F H F YE + AE L + ++ F ++G+ A+E A+K+A R ++
Sbjct: 62 VAEFTHTCFMVTPYEGYVALAEKLNRIAPGSGPKKSVFFNSGAEAVENAVKIA-RSYT-- 118
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548
G+ V+A +HG T M A P+ SG G F
Sbjct: 119 --------GRPG--------VVAFDHGFHGRTNMTMALTAKV-------MPYKSGFGPF- 154
Query: 549 DPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNL 608
P V+ LP + Y + K ++ +LA+ + ++
Sbjct: 155 -APEVYR------APLP-YPYRDGLLDKQLST------------DGELAAARAIFVIDVG 194
Query: 609 LQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR 668
N + AL+IEPV GG + F L+ C+ I I DEV TGF R
Sbjct: 195 ANN--------VAALVIEPV-QGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFAR 245
Query: 669 LGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDS 710
G + G PD+ K L G +PL+ + D+
Sbjct: 246 TGAMFACEHEGPEPDLITTAKSLADG-LPLSGVTGRAEIMDA 286
|
This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known bacterial examples of the enzyme. The best archaeal matches are presumed but not trusted to have the equivalent function. The degree of sequence difference between this set and known eukaryotic (mitochondrial) examples is greater than the distance to some proteins known to have different functions, and so separate models are built for prokaryotic and eukaryotic sets. E. coli has two isozymes. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 420 |
| >gnl|CDD|235112 PRK03244, argD, acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 1e-07
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 25/98 (25%)
Query: 429 AARFGHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
A GHV N++ EP + AE L++ +G R +F ++G+ A E A K+A
Sbjct: 72 LATLGHV---SNLFATEPQIALAERLVELLGAPEGGRVFFCNSGAEANEAAFKLARLT-- 126
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM 524
G+ K++A +G +HG T+GA+
Sbjct: 127 ----------GRT--------KIVAAEGGFHGRTMGAL 146
|
Length = 398 |
| >gnl|CDD|236032 PRK07495, PRK07495, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 2e-07
Identities = 70/280 (25%), Positives = 101/280 (36%), Gaps = 63/280 (22%)
Query: 431 RFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHE 490
RF H YE + AE L V +A + F G+ A+E A+K+A
Sbjct: 71 RFTHTCHQVVPYENYVRLAERLNALVPGDFAKKTIFVTTGAEAVENAVKIA--------- 121
Query: 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDP 550
+ T + V+A G +HG T M TG + P+ G G
Sbjct: 122 -------RAATGRS---AVIAFGGGFHGRTFMGMS------LTGKVV-PYKVGFGA---- 160
Query: 551 PTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQ 610
M + + P L+ VE + + D++F + D +A+I
Sbjct: 161 ----MMPDVYHVPFPVELHGVSVEQ---SLAALDKLFKADVDPQRVAAI----------- 202
Query: 611 NPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG 670
IIEPV GG + F + L + C I +I DEV TGF R G
Sbjct: 203 -------------IIEPV-QGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTG 248
Query: 671 VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDS 710
+ D+ K L GG PLAA + D+
Sbjct: 249 KLFAMEHHEVAADLTTMAKGLAGG-FPLAAVTGRAEIMDA 287
|
Length = 425 |
| >gnl|CDD|222178 pfam13500, AAA_26, AAA domain | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 3e-07
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLP 98
T + +T +GKT+VS GL + K Y KPIQ+G D DS + +L
Sbjct: 2 TIFVTGTDTGVGKTVVSLGLVRAL------KRGVKVGYWKPIQSGLVDDGDSELV-KRLL 54
Query: 99 SLSLRRNFPSSLILS 113
L R P LS
Sbjct: 55 GLDQTREHPEPYRLS 69
|
This domain is found in a number of proteins involved in cofactor biosynthesis such as dethiobiotin synthase and cobyric acid synthase. This domain contains a P-loop motif. Length = 197 |
| >gnl|CDD|129447 TIGR00347, bioD, dethiobiotin synthase | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 3e-07
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 14/114 (12%)
Query: 172 FAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGG 231
+A+ +SPH+AA++E + D + + L + + K + + +VE AGG
Sbjct: 65 YAFALPLSPHIAADQEGRPI--DLEELS-------KHLRTLEQ----KYDFV-LVEGAGG 110
Query: 232 VASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVV 285
+ P DL + +LP ILV +LG I+ T+ E + G + V+
Sbjct: 111 LCVPITEEYTTADLIKLLQLPVILVVRVKLGTINHTLLTVEHARQTGLTLAGVI 164
|
Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 166 |
| >gnl|CDD|215405 PLN02760, PLN02760, 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 3e-07
Identities = 70/282 (24%), Positives = 110/282 (39%), Gaps = 64/282 (22%)
Query: 443 EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTE 502
+P+L+ A+ LL+ + +F+++GS A + +K+ + + LG+ +
Sbjct: 133 KPSLDLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLVW--------YYNNALGRPNKK 184
Query: 503 KCIELKVLALKGSYHGDTL-GAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK-- 559
K I A SYHG TL A + P+ + F D P F+ ++
Sbjct: 185 KFI-----ARSKSYHGSTLISASLSGLPALHQKF-------------DLPAPFVLHTDCP 226
Query: 560 --WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVS 617
W LP E EE S+ LA +NL+ G +
Sbjct: 227 HYWRFHLP------------------GET--EEEFSTRLADNL-----ENLILKEGPET- 260
Query: 618 GCIGALIIEPVVHAAGGMHMVDPLFQRI--LVKECQNRKIPVIFDEVFTGFWRLGVETTA 675
I A I EPV+ A G + F++I ++K+ I I DEV F RLG
Sbjct: 261 --IAAFIAEPVMGAGGVIPPPATYFEKIQAVLKK---YDILFIADEVICAFGRLGTMFGC 315
Query: 676 DLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKK 717
D PD+ K L+ +P+ A L + + D S K
Sbjct: 316 DKYNIKPDLVSLAKALSSAYMPIGAVLVSPEISDVIHSQSNK 357
|
Length = 504 |
| >gnl|CDD|235823 PRK06541, PRK06541, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 3e-07
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLL 678
+ A+ +EPV +A G F+R V+E C + ++ DEV F RLG +
Sbjct: 222 VAAVFLEPVQNAGGCFPPPPGYFER--VREICDRYDVLLVSDEVICAFGRLGEMFGCERF 279
Query: 679 GCVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
G VPDI K +T G PL A +A++ +F+ F
Sbjct: 280 GYVPDIITCAKGITSGYSPLGAMIASDRLFEPF 312
|
Length = 460 |
| >gnl|CDD|236027 PRK07483, PRK07483, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 5e-07
Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 622 ALIIEPVVHA-AGGMHMVDPLFQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
A + E VV A AG + V F+RI +E C + +I DEV G R G + G
Sbjct: 202 AFVAETVVGATAGAVPPVPGYFKRI--REVCDRYGVLLILDEVMCGMGRTGTLFACEEDG 259
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS 715
PD+ K L G P+ A LA++ ++D+ S
Sbjct: 260 VAPDLVTIAKGLGAGYQPIGAVLASDRIYDAIADGS 295
|
Length = 443 |
| >gnl|CDD|236027 PRK07483, PRK07483, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 6e-07
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 14/84 (16%)
Query: 443 EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTE 502
EPA A+ L+ G YF GS A+E ALK+A R++ F+ +
Sbjct: 73 EPAEALADRLVAAAPAG-LEHVYFVSGGSEAVEAALKLA-RQY---------FVEIGQPQ 121
Query: 503 KCIELKVLALKGSYHGDTLGAMEA 526
+ +A + SYHG+TLGA+
Sbjct: 122 R---RHFIARRQSYHGNTLGALAI 142
|
Length = 443 |
| >gnl|CDD|179636 PRK03715, argD, acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 6e-07
Identities = 33/86 (38%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681
A+++EPV GG+ F + L + + +I DEV TG R G +L G
Sbjct: 182 AVMLEPV-QGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIE 240
Query: 682 PDIACYGKLLTGGVIPLAATLATNAV 707
PDI GK + GGV PLAA LA V
Sbjct: 241 PDIMTLGKGIGGGV-PLAALLAKAEV 265
|
Length = 395 |
| >gnl|CDD|179270 PRK01278, argD, acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 8e-07
Identities = 31/93 (33%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL-- 677
A++IEP+ GG+ F + L + C + +IFDEV G R T L
Sbjct: 176 TAAILIEPI-QGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGR-----TGKLFA 229
Query: 678 ---LGCVPDIACYGKLLTGGVIPLAATLATNAV 707
G PDI K + GG PL A LAT
Sbjct: 230 HEWAGVTPDIMAVAKGIGGG-FPLGACLATEEA 261
|
Length = 389 |
| >gnl|CDD|234803 PRK00615, PRK00615, glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 8e-07
Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 11/108 (10%)
Query: 604 ISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDE 661
I Q ++ + G +V+G +I EP+ M +V P F +++ C+ I DE
Sbjct: 190 IFQTVMNSLGHRVAG----VIFEPI---CANMGVVLPKPGFIEGIIQTCRRTGSLSIMDE 242
Query: 662 VFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFD 709
V TGF R+ A + PDI YGK+L GG +P AA +A ++ D
Sbjct: 243 VVTGF-RVAQGGAAAIYHVKPDITVYGKILGGG-LPAAAVVAHKSIMD 288
|
Length = 433 |
| >gnl|CDD|215335 PLN02624, PLN02624, ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 9e-07
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
I A + EP+ AG + + + + + + C + +I DE+ TG R G D
Sbjct: 225 IAAFLFEPIQGEAGVV-IPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDWEE 283
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAV 707
PD+ GK L GGVIP++A LA V
Sbjct: 284 VRPDVVILGKALGGGVIPVSAVLADKDV 311
|
Length = 474 |
| >gnl|CDD|180401 PRK06105, PRK06105, aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 1e-06
Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 620 IGALIIEPVVHAAGGMHMVDP--LFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
I A I EPV+ AGG+ +V P +++I + I ++ DEV GF R G +
Sbjct: 219 IAAFIGEPVM-GAGGV-IVPPKTYWEKIQAV-LRKYDILLVADEVICGFGRTGNMFGCET 275
Query: 678 LGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKK 717
G PDI K L+ PL+A L V+D +S K
Sbjct: 276 FGIKPDILVMSKQLSSSYQPLSAVLMNEKVYDPIADESGK 315
|
Length = 460 |
| >gnl|CDD|132290 TIGR03246, arg_catab_astC, succinylornithine transaminase family | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 8e-06
Identities = 34/94 (36%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681
A+I+EP+ GG+ DP F + L + C +IFDEV TG R G G
Sbjct: 182 AVIVEPI-QGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVT 240
Query: 682 PDIACYGKLLTGGVIPLAATLATNAVFDSF-VGD 714
PDI K L GG P+ A L T + VG
Sbjct: 241 PDILTSAKALGGG-FPIGAMLTTTEIAAHLKVGT 273
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason [Energy metabolism, Amino acids and amines]. Length = 397 |
| >gnl|CDD|130940 TIGR01885, Orn_aminotrans, ornithine aminotransferase | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 9e-06
Identities = 60/243 (24%), Positives = 91/243 (37%), Gaps = 77/243 (31%)
Query: 470 GSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCI---ELKVLALKGSYHGDTLGAMEA 526
G+ A+E A+K+A RK+ + K I + +++ KG++HG TLGA+
Sbjct: 103 GAEAVETAIKLA-RKWGYK-------------VKGIPENQAIIVSAKGNFHGRTLGAISM 148
Query: 527 QA-PSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDE 585
P T F G ++ YN
Sbjct: 149 STDPDSRTNF---------GPYVPGFKKIPYN---------------------------- 171
Query: 586 IFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRI 645
+ L L++ G V A I+EP+ AG + D ++
Sbjct: 172 ------NLEALEEA---------LEDHGPNVC----AFIVEPIQGEAGVVVPDDGYLKK- 211
Query: 646 LVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLAT 704
V+E C + +I DE+ TG R G D PDI GK L+GGV P++A LA
Sbjct: 212 -VRELCTKHNVLLIADEIQTGLGRTGKLLCVDHENVKPDIVLLGKALSGGVYPVSAVLAD 270
Query: 705 NAV 707
+ V
Sbjct: 271 DDV 273
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis (OMNI|PG1271), and the other from Staphylococcus aureus (OMNI|SA0170). After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis (SP|P38021). Length = 401 |
| >gnl|CDD|177748 PLN00144, PLN00144, acetylornithine transaminase | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 32/100 (32%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
Query: 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA 675
G A+ +EPV GG++ F + L C ++FDEV G R G
Sbjct: 164 QKGKTAAVFVEPV-QGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAH 222
Query: 676 DLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV-GD 714
+ G PDI K L GG +P+ A L T V + GD
Sbjct: 223 EAYGVEPDIMTLAKPLAGG-LPIGAVLVTEKVASAINPGD 261
|
Length = 382 |
| >gnl|CDD|179505 PRK02936, argD, acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 68/275 (24%), Positives = 103/275 (37%), Gaps = 86/275 (31%)
Query: 440 NVYEPAL--ECAELLLQG-VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496
N++ +L E A LL + G +F ++G+ A E ALK+A RK +
Sbjct: 66 NLFTNSLQEEVASLLAENSAGD----LVFFCNSGAEANEAALKLA-RKHT---------- 110
Query: 497 GKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556
GK K++ + S+HG T G M A TG Q+ G G P
Sbjct: 111 GKS--------KIVTFEQSFHGRTFGTMSA------TG--QEKIKEGFG-----PL---- 145
Query: 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKV 616
LP + + V DI + E + ++A++
Sbjct: 146 -------LPGFTH---VPFNDI------KALKEVMN-EEVAAV----------------- 171
Query: 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD 676
++E VV GG+ DP F + + C+ +I DEV TG R G +
Sbjct: 172 -------MLE-VVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYE 223
Query: 677 LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
G PDI K L G IP+ A + + +F
Sbjct: 224 QFGLDPDIVTVAKGLGNG-IPVGAMIGKKELGTAF 257
|
Length = 377 |
| >gnl|CDD|183486 PRK12381, PRK12381, bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 30/91 (32%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681
A+I+EP+ GG+ D F + L + C +IFDEV TG R G G
Sbjct: 186 AVIVEPIQ-GEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVT 244
Query: 682 PDIACYGKLLTGGVIPLAATLATNAVFDSFV 712
PD+ K L GG P+ A L T
Sbjct: 245 PDVLTTAKALGGG-FPIGAMLTTEKCASVMT 274
|
Length = 406 |
| >gnl|CDD|183493 PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 4e-05
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 620 IGALIIEPVVHAAG--GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
+ A+++EP+V G G+ P F + + VI+DEV T F R DL
Sbjct: 201 VAAVLVEPIV---GNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF-RFMYGGAQDL 256
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
LG PD+ GK++ GG +P+ A
Sbjct: 257 LGVEPDLTALGKIIGGG-LPIGA 278
|
Length = 428 |
| >gnl|CDD|236026 PRK07482, PRK07482, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 4e-05
Identities = 34/96 (35%), Positives = 44/96 (45%), Gaps = 13/96 (13%)
Query: 620 IGALIIEPVVHAAGGMHMVDP------LFQRILVKECQNRKIPVIFDEVFTGFWRLGVET 673
I A I EPV+ G +V P Q +L K I +I DEV TGF RLG
Sbjct: 221 IAAFIAEPVLGTGG---IVPPPAGYWPAIQAVLKK----YDILLIADEVVTGFGRLGSMF 273
Query: 674 TADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFD 709
+D G PD+ K LT PL+ ++ V+D
Sbjct: 274 GSDHYGIEPDLITVAKGLTSAYAPLSGSIVGEKVWD 309
|
Length = 461 |
| >gnl|CDD|178100 PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 4e-05
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
G I A+I+EPVV +G + + F L + + ++FDEV TGF R+ +
Sbjct: 245 GEIAAVILEPVVGNSGFI-VPKKEFLEGLREITKENGALLVFDEVMTGF-RIAYGGAQEY 302
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
G PD+ GK++ GG +P+ A
Sbjct: 303 FGITPDLTTLGKVIGGG-LPVGA 324
|
Length = 474 |
| >gnl|CDD|179933 PRK05093, argD, bifunctional N-succinyldiaminopimelate- aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 4e-05
Identities = 33/93 (35%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681
A+++EP+ GG+ P F + L + C +IFDEV TG R G G
Sbjct: 187 AVVVEPI-QGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVT 245
Query: 682 PDIACYGKLLTGGVIPLAATLATNAVFDSF-VG 713
PDI K L GG P+ A L T + F VG
Sbjct: 246 PDILTSAKALGGG-FPIGAMLTTAEIASHFKVG 277
|
Length = 403 |
| >gnl|CDD|180690 PRK06777, PRK06777, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 6e-05
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
+ A+++EP+ GG ++ P F L C I +I DEV TGF R G +
Sbjct: 199 VAAILLEPI-QGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYD 257
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDS 710
PD+ K L GG +P++A + V D+
Sbjct: 258 VKPDLITMAKSLGGG-MPISAVVGRAEVMDA 287
|
Length = 421 |
| >gnl|CDD|235685 PRK06058, PRK06058, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 8e-05
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681
A+IIEP+ GG + F L++ C+ + I DEV TGF R G + G V
Sbjct: 222 AVIIEPI-QGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEHEGIV 280
Query: 682 PDIACYGKLLTGGVIPLAA 700
PD+ K + GG +PL+A
Sbjct: 281 PDLITTAKGIAGG-LPLSA 298
|
Length = 443 |
| >gnl|CDD|179736 PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 8e-05
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Query: 622 ALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
A ++EP+ AG + P F + + C+ + I DE+ TG R G D
Sbjct: 189 AFLVEPIQGEAG---INIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFACDWDN 245
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
PD+ GK L GGV P++ A + F
Sbjct: 246 VTPDMYILGKALGGGVFPISCVAANRDILGVF 277
|
Length = 396 |
| >gnl|CDD|235823 PRK06541, PRK06541, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 49/180 (27%), Positives = 72/180 (40%), Gaps = 35/180 (19%)
Query: 352 DMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQ 411
D+ A W FT+H + V VI GE ++ D+ +++ D A +
Sbjct: 11 DLQALAKRHLWMHFTRHGAYIDAPVPVIV--RGEGCYIWDDRGKRYL----DGLAGLFV- 63
Query: 412 GPDATLQI-----ELARDMGYTAARFGHVMFPENVY--EPALECAELLLQGVGKGWASRA 464
+Q+ ELA A FP Y PA+E AE L + G +R
Sbjct: 64 -----VQVGHGRAELAEAAAKQAGTLAF--FPLWSYAHPPAIELAERL-AALAPGDLNRV 115
Query: 465 YFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM 524
+F+ GS A+E A K+A + F GK K I + +YHG T GA+
Sbjct: 116 FFTTGGSEAVESAWKLAKQYFKL--------TGKPGKHKVISRAI-----AYHGTTQGAL 162
|
Length = 460 |
| >gnl|CDD|132290 TIGR03246, arg_catab_astC, succinylornithine transaminase family | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 22/123 (17%)
Query: 420 ELARDMGYTAARFGHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIA 477
EL + + A + H+ N Y EP L A+ L V +A + +F ++G+ A E A
Sbjct: 55 ELVKALIEQADKLWHI---GNGYTNEPVLRLAKKL---VDATFADKVFFCNSGAEANEAA 108
Query: 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT-GFL 536
LK+A R+++ D G D +E ++A K S+HG TL + Y+ GF
Sbjct: 109 LKLA-RRYALDK------HGADKSE------IVAFKNSFHGRTLFTVSVGGQPKYSQGFA 155
Query: 537 QQP 539
P
Sbjct: 156 PLP 158
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason [Energy metabolism, Amino acids and amines]. Length = 397 |
| >gnl|CDD|129792 TIGR00709, dat, 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 1e-04
Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 8/113 (7%)
Query: 601 SSYISQNLLQNPGLKVSGCI--GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVI 658
S +N +++ SG A+I+E + GG+ + + + + + I +I
Sbjct: 189 SIEYFENFIEDVE---SGVDKPAAVILE-AIQGEGGVVAAPSEWLQKIREVTRKHDIKLI 244
Query: 659 FDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
DEV GF R G + G PD K + GG +PLA L FD++
Sbjct: 245 LDEVQAGFGRSGTMFAFEHAGIEPDFVVMSKAVGGG-LPLAVLLIAPE-FDAW 295
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase [Central intermediary metabolism, Other]. Length = 442 |
| >gnl|CDD|177748 PLN00144, PLN00144, acetylornithine transaminase | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 14/98 (14%)
Query: 429 AARFGHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
A HV NVY P +E A+ L V +A R +F ++G+ A E A+K A RK+
Sbjct: 44 AGTLAHV---SNVYHTIPQVELAKRL---VASSFADRVFFCNSGTEANEAAIKFA-RKY- 95
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM 524
V E ++ S+HG TLGA+
Sbjct: 96 --QRVRAPDKKDPAASSATEF--VSFSNSFHGRTLGAL 129
|
Length = 382 |
| >gnl|CDD|179933 PRK05093, argD, bifunctional N-succinyldiaminopimelate- aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 2e-04
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 18/84 (21%)
Query: 440 NVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497
NV+ EPAL A+ L + +A R +F+++G+ A E A K+A R+++ D G
Sbjct: 77 NVFTNEPALRLAKKL---IDATFAERVFFANSGAEANEAAFKLA-RRYACDR------HG 126
Query: 498 KDTTEKCIELKVLALKGSYHGDTL 521
+ TE ++A S+HG TL
Sbjct: 127 PEKTE------IIAFHNSFHGRTL 144
|
Length = 403 |
| >gnl|CDD|132295 TIGR03251, LAT_fam, L-lysine 6-transaminase | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 25/70 (35%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
I I EP+ G H P F R + C +IFDEV TG G LG
Sbjct: 219 IACFIAEPIQGEGGDNHF-RPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLG 277
Query: 680 CVPDIACYGK 689
PDI +GK
Sbjct: 278 VQPDIVAFGK 287
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. Length = 431 |
| >gnl|CDD|181401 PRK08360, PRK08360, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 3e-04
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 620 IGALIIEPVVHAAGGMHMVDP---LFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD 676
+ AL EP+ AG M+ P F++ L K I ++ DEV +G R G +
Sbjct: 205 VAALFAEPIQGDAG---MIVPPEDYFKK-LKKILDEHGILLVVDEVQSGLGRTGKWFAIE 260
Query: 677 LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDS 710
G PDI GK L GG +P++AT+ + DS
Sbjct: 261 HFGVEPDIITLGKPLGGG-LPISATIGRAEIMDS 293
|
Length = 443 |
| >gnl|CDD|239383 cd03109, DTBS, Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 4e-04
Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 1/90 (1%)
Query: 225 IVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAV 284
+VE AGG+ P D+ + LP ILV LG I+ E+ +++G + V
Sbjct: 43 LVEGAGGLCVPLKEDFTNADVAKELNLPAILVTSAGLGSINHAFLTIEAARIKGIILNGV 102
Query: 285 VFEDHGLVNEVPLMSYLRNRVPVLVLPPLP 314
+ E + + +P L
Sbjct: 103 LGNVIVE-KEGLATLNVETIERLTGIPVLG 131
|
The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors. Length = 134 |
| >gnl|CDD|235885 PRK06918, PRK06918, 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 4e-04
Identities = 63/282 (22%), Positives = 108/282 (38%), Gaps = 56/282 (19%)
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
++ H F +YEP +E AE L + + F ++G+ A+E A+K+A RK++
Sbjct: 83 VDQYIHTGFNVMMYEPYIELAEKLAALAPGSFDKKVLFLNSGAEAVENAVKIA-RKYT-K 140
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548
+ ++ F +G +HG TL M + +P+ G G F
Sbjct: 141 RQGIISFS----------------RG-FHGRTLMTMTMTSKV-------KPYKFGFGPF- 175
Query: 549 DPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNL 608
P V+ + PE +T D+ EE + ++ + I+
Sbjct: 176 -APEVYKAPFPYEYRRPE----------GLTEEQYDDFMIEEFKNFFISEVAPETIA--- 221
Query: 609 LQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR 668
A+++EPV GG + F + + C I + DE+ TGF R
Sbjct: 222 -------------AVVMEPV-QGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFAR 267
Query: 669 LGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDS 710
G + VPD+ K L GV P++ + + D
Sbjct: 268 TGKYFAIEHFDVVPDLITVSKSLGAGV-PISGVIGRKEIMDE 308
|
Length = 451 |
| >gnl|CDD|234848 PRK00854, rocD, ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 5e-04
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680
A ++EP+ AG + F R V+E C + +I DE+ TG R G + G
Sbjct: 190 AFLVEPIQGEAGVIIPPAGYFTR--VRELCTANNVTLILDEIQTGLGRTGKLLAEEHEGI 247
Query: 681 VPDIACYGKLLTGGVIPLAATLATNAV 707
D+ GK L+GG P++A L+ + V
Sbjct: 248 EADVTLIGKALSGGFYPVSAVLSNSEV 274
|
Length = 401 |
| >gnl|CDD|183486 PRK12381, PRK12381, bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 6e-04
Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 30/125 (24%)
Query: 420 ELARDMGYTAARFGHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIA 477
L + A++F H N Y EP L A+ L+ +A R +F ++G+ A E A
Sbjct: 59 ALREALNEQASKFWHT---GNGYTNEPVLRLAKKLIDAT---FADRVFFCNSGAEANEAA 112
Query: 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQ 537
LK+A RK++ D G + ++A K ++HG TL + A
Sbjct: 113 LKLA-RKYAHDR------YGSHKSG------IVAFKNAFHGRTLFTVSAGG--------- 150
Query: 538 QPWYS 542
QP YS
Sbjct: 151 QPKYS 155
|
Length = 406 |
| >gnl|CDD|179803 PRK04260, PRK04260, acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 6e-04
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681
A+++E +V G+ D F + L CQ I +I DEV TG R G + G
Sbjct: 168 AVMLE-LVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIE 226
Query: 682 PDIACYGKLLTGGVIPLAATLATNAVFDSF 711
PDI K L GV P+ A LA +++ +F
Sbjct: 227 PDIFTLAKGLANGV-PVGAMLAKSSLGGAF 255
|
Length = 375 |
| >gnl|CDD|223210 COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 9/71 (12%)
Query: 46 NTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTG---YPHDSDSRFLFTKLPSLSL 102
+T +GKT+VSA L KP+QTG +SD+ L +L L L
Sbjct: 11 DTGVGKTVVSAAL-----AQALKQQGYSVAGYKPVQTGSEETAENSDALVL-QRLSGLDL 64
Query: 103 RRNFPSSLILS 113
+
Sbjct: 65 SYELINPYRFK 75
|
Length = 223 |
| >gnl|CDD|179270 PRK01278, argD, acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.002
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 29/122 (23%)
Query: 429 AARFGHVMFPENVYE-PALE-CAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
A + HV N+Y P E AE L V +A + +F+++G+ A+E A+K A R++
Sbjct: 60 AEKLWHV---SNLYRIPEQERLAERL---VENSFADKVFFTNSGAEAVECAIKTA-RRYH 112
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT--------GFLQQ 538
+ GK E+ +++ +G++HG TL + A Y GF Q
Sbjct: 113 Y---------GKGHPER---YRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQV 160
Query: 539 PW 540
P+
Sbjct: 161 PF 162
|
Length = 389 |
| >gnl|CDD|236224 PRK08297, PRK08297, L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.003
Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 19/79 (24%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG------FW---RLG 670
I I EP+ GG + P F + + C +IFDEV TG W +LG
Sbjct: 226 IACFIAEPI-QGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAWAYQQLG 284
Query: 671 VETTADLLGCVPDIACYGK 689
V PDI +GK
Sbjct: 285 VR---------PDIVAFGK 294
|
Length = 443 |
| >gnl|CDD|182078 PRK09792, PRK09792, 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.004
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
+ A+I EPV GG ++ + + C I +I DEV +GF R G D
Sbjct: 199 VAAIIFEPV-QGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYA 257
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDS 710
PD+ K L GG +PL+ + + D+
Sbjct: 258 DKPDLMTMAKSLAGG-MPLSGVVGNANIMDA 287
|
Length = 421 |
| >gnl|CDD|179868 PRK04612, argD, acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.004
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 28/108 (25%)
Query: 433 GHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSF--- 487
G + NV+ P L+ AE L+ +A + + ++G+ A E A+K+ RK++
Sbjct: 70 GKLWHTSNVFYSAPPLKLAEELVTA--SRFAEKVFLCNSGTEANEAAIKLV-RKWASSQG 126
Query: 488 ---DHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY 532
D V+V F +GS+HG TL A+ A A Y
Sbjct: 127 RPADKRVIVTF-----------------RGSFHGRTLAAVTATAQPKY 157
|
Length = 408 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 719 | |||
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 100.0 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 100.0 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 100.0 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 100.0 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 100.0 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 100.0 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 100.0 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 100.0 | |
| PRK07678 | 451 | aminotransferase; Validated | 100.0 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 100.0 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 100.0 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 100.0 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK06105 | 460 | aminotransferase; Provisional | 100.0 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 100.0 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 100.0 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 100.0 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 100.0 | |
| KOG1401 | 433 | consensus Acetylornithine aminotransferase [Amino | 100.0 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 100.0 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 100.0 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 100.0 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 100.0 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 100.0 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 100.0 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 100.0 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 100.0 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 100.0 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 100.0 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 100.0 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 100.0 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 100.0 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 100.0 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 100.0 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 100.0 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 100.0 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 100.0 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 100.0 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 100.0 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 100.0 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 100.0 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 100.0 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 100.0 | |
| PRK07046 | 453 | aminotransferase; Validated | 100.0 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 100.0 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 100.0 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 100.0 | |
| PLN00144 | 382 | acetylornithine transaminase | 100.0 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 100.0 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 100.0 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 100.0 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 100.0 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 100.0 | |
| KOG1403 | 452 | consensus Predicted alanine-glyoxylate aminotransf | 100.0 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 100.0 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 100.0 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 100.0 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 100.0 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 100.0 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 100.0 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 100.0 | |
| KOG1405 | 484 | consensus 4-aminobutyrate aminotransferase [Amino | 100.0 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 100.0 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 100.0 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 100.0 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 100.0 | |
| COG0132 | 223 | BioD Dethiobiotin synthetase [Coenzyme metabolism] | 100.0 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 100.0 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 100.0 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 100.0 | |
| PF13500 | 199 | AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R | 100.0 | |
| PRK12374 | 231 | putative dithiobiotin synthetase; Provisional | 99.98 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 99.97 | |
| PRK00090 | 222 | bioD dithiobiotin synthetase; Reviewed | 99.97 | |
| PRK00784 | 488 | cobyric acid synthase; Provisional | 99.95 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 99.94 | |
| TIGR00347 | 166 | bioD dethiobiotin synthase. Dethiobiotin synthase | 99.92 | |
| PRK06278 | 476 | cobyrinic acid a,c-diamide synthase; Validated | 99.92 | |
| COG1797 | 451 | CobB Cobyrinic acid a,c-diamide synthase [Coenzyme | 99.91 | |
| PRK13896 | 433 | cobyrinic acid a,c-diamide synthase; Provisional | 99.91 | |
| TIGR00313 | 475 | cobQ cobyric acid synthase CobQ. | 99.91 | |
| PRK01077 | 451 | cobyrinic acid a,c-diamide synthase; Validated | 99.9 | |
| TIGR00379 | 449 | cobB cobyrinic acid a,c-diamide synthase. This mod | 99.9 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.89 | |
| PLN02822 | 481 | serine palmitoyltransferase | 99.89 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.87 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.86 | |
| PRK05632 | 684 | phosphate acetyltransferase; Reviewed | 99.85 | |
| cd03109 | 134 | DTBS Dethiobiotin synthetase (DTBS) is the penulti | 99.85 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 99.84 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.84 | |
| COG1492 | 486 | CobQ Cobyric acid synthase [Coenzyme metabolism] | 99.84 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.78 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.75 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.74 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.73 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.71 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.71 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 99.68 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.64 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.63 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.61 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.55 | |
| COG0857 | 354 | Pta BioD-like N-terminal domain of phosphotransace | 99.52 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.45 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 99.42 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.37 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.21 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 98.99 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 98.98 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 98.92 | |
| PLN02721 | 353 | threonine aldolase | 98.92 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 98.91 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 98.91 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 98.85 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 98.82 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 98.79 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 98.75 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 98.75 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 98.68 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 98.64 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 98.63 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 98.62 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 98.6 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 98.59 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 98.56 | |
| PRK07682 | 378 | hypothetical protein; Validated | 98.56 | |
| TIGR01007 | 204 | eps_fam capsular exopolysaccharide family. This mo | 98.56 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 98.53 | |
| TIGR01969 | 251 | minD_arch cell division ATPase MinD, archaeal. Thi | 98.48 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 98.48 | |
| cd02037 | 169 | MRP-like MRP (Multiple Resistance and pH adaptatio | 98.43 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 98.41 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 98.4 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 98.4 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.38 | |
| PLN02242 | 418 | methionine gamma-lyase | 98.38 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 98.36 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 98.35 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 98.35 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 98.35 | |
| PRK07777 | 387 | aminotransferase; Validated | 98.34 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 98.34 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 98.34 | |
| PLN02651 | 364 | cysteine desulfurase | 98.31 | |
| CHL00175 | 281 | minD septum-site determining protein; Validated | 98.31 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 98.31 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 98.3 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 98.3 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 98.29 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 98.28 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 98.28 | |
| TIGR01968 | 261 | minD_bact septum site-determining protein MinD. Th | 98.28 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 98.27 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.26 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 98.24 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 98.22 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 98.21 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 98.21 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 98.2 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 98.2 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 98.19 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 98.18 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 98.18 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 98.15 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 98.15 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 98.13 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 98.13 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 98.13 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 98.13 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 98.13 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 98.12 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 98.1 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 98.09 | |
| PRK07324 | 373 | transaminase; Validated | 98.08 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 98.08 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 98.08 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 98.06 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 98.04 | |
| cd02036 | 179 | MinD Bacterial cell division requires the formatio | 98.04 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 98.03 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 98.03 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 98.02 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 98.02 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 98.0 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 97.99 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 97.99 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 97.99 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 97.98 | |
| PF01656 | 195 | CbiA: CobQ/CobB/MinD/ParA nucleotide binding domai | 97.97 | |
| TIGR03029 | 274 | EpsG chain length determinant protein tyrosine kin | 97.96 | |
| cd02033 | 329 | BchX Chlorophyllide reductase converts chlorophyll | 97.96 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 97.96 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 97.95 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 97.95 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 97.94 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 97.93 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 97.92 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 97.91 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 97.89 | |
| PRK08068 | 389 | transaminase; Reviewed | 97.89 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 97.89 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 97.88 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 97.88 | |
| TIGR03018 | 207 | pepcterm_TyrKin exopolysaccharide/PEPCTERM locus t | 97.87 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 97.87 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 97.86 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 97.86 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 97.86 | |
| COG0489 | 265 | Mrp ATPases involved in chromosome partitioning [C | 97.85 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 97.85 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 97.85 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 97.85 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 97.83 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 97.82 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 97.82 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 97.8 | |
| PRK07683 | 387 | aminotransferase A; Validated | 97.8 | |
| COG1149 | 284 | MinD superfamily P-loop ATPase containing an inser | 97.79 | |
| PRK11670 | 369 | antiporter inner membrane protein; Provisional | 97.79 | |
| COG3640 | 255 | CooC CO dehydrogenase maturation factor [Cell divi | 97.79 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 97.78 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 97.78 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 97.78 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 97.77 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 97.76 | |
| TIGR02016 | 296 | BchX chlorophyllide reductase iron protein subunit | 97.75 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 97.75 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 97.75 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 97.75 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 97.74 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 97.74 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 97.73 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 97.73 | |
| cd03110 | 179 | Fer4_NifH_child This protein family's function is | 97.73 | |
| PRK08175 | 395 | aminotransferase; Validated | 97.72 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 97.72 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 97.71 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 97.7 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 97.7 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 97.7 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 97.68 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 97.68 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 97.68 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 97.68 | |
| cd00550 | 254 | ArsA_ATPase Oxyanion-translocating ATPase (ArsA). | 97.68 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 97.68 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 97.67 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 97.67 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 97.66 | |
| PLN02509 | 464 | cystathionine beta-lyase | 97.65 | |
| TIGR03815 | 322 | CpaE_hom_Actino helicase/secretion neighborhood Cp | 97.65 | |
| PRK09148 | 405 | aminotransferase; Validated | 97.64 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 97.63 | |
| PRK09841 | 726 | cryptic autophosphorylating protein tyrosine kinas | 97.61 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 97.61 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 97.61 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 97.6 | |
| PRK07337 | 388 | aminotransferase; Validated | 97.6 | |
| PRK14494 | 229 | putative molybdopterin-guanine dinucleotide biosyn | 97.6 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 97.6 | |
| PLN02656 | 409 | tyrosine transaminase | 97.59 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 97.58 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 97.58 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 97.57 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 97.57 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 97.57 | |
| PRK11519 | 719 | tyrosine kinase; Provisional | 97.56 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 97.56 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 97.56 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 97.55 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 97.55 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 97.54 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 97.53 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 97.52 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 97.51 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 97.5 | |
| COG2894 | 272 | MinD Septum formation inhibitor-activating ATPase | 97.49 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 97.48 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 97.48 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 97.47 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 97.45 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 97.44 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 97.43 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 97.42 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 97.4 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 97.4 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 97.39 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 97.39 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 97.38 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 97.38 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 97.37 | |
| cd02117 | 212 | NifH_like This family contains the NifH (iron prot | 97.36 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 97.36 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 97.36 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 97.36 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 97.36 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 97.35 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 97.34 | |
| PRK13185 | 270 | chlL protochlorophyllide reductase iron-sulfur ATP | 97.33 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 97.31 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 97.29 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 97.26 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 97.25 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 97.25 | |
| cd02035 | 217 | ArsA ArsA ATPase functionas as an efflux pump loca | 97.24 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 97.24 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 97.23 | |
| cd02040 | 270 | NifH NifH gene encodes component II (iron protein) | 97.23 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 97.23 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 97.22 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 97.22 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 97.21 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 97.21 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 97.2 | |
| KOG3022 | 300 | consensus Predicted ATPase, nucleotide-binding [Ce | 97.2 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 97.19 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 97.19 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 97.18 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 97.15 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 97.14 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 97.13 | |
| COG0455 | 262 | flhG Antiactivator of flagellar biosynthesis FleN, | 97.11 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 97.11 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.1 | |
| PLN02187 | 462 | rooty/superroot1 | 97.1 | |
| PRK06855 | 433 | aminotransferase; Validated | 97.09 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 97.09 | |
| TIGR01005 | 754 | eps_transp_fam exopolysaccharide transport protein | 97.08 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 97.07 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 97.04 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.03 | |
| cd02032 | 267 | Bchl_like This family of proteins contains bchL an | 97.02 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 97.02 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 97.01 | |
| PRK13232 | 273 | nifH nitrogenase reductase; Reviewed | 96.97 | |
| TIGR01281 | 268 | DPOR_bchL light-independent protochlorophyllide re | 96.96 | |
| PF02374 | 305 | ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_ | 96.96 | |
| PRK14495 | 452 | putative molybdopterin-guanine dinucleotide biosyn | 96.96 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 96.93 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 96.93 | |
| TIGR00176 | 155 | mobB molybdopterin-guanine dinucleotide biosynthes | 96.92 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 96.91 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 96.89 | |
| cd02038 | 139 | FleN-like FleN is a member of the Fer4_NifH superf | 96.89 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 96.88 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 96.87 | |
| PRK10818 | 270 | cell division inhibitor MinD; Provisional | 96.87 | |
| PHA02518 | 211 | ParA-like protein; Provisional | 96.84 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 96.82 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 96.81 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 96.8 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 96.78 | |
| PLN02880 | 490 | tyrosine decarboxylase | 96.77 | |
| CHL00072 | 290 | chlL photochlorophyllide reductase subunit L | 96.75 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 96.74 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 96.73 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 96.72 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 96.7 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 96.68 | |
| cd03113 | 255 | CTGs CTP synthetase (CTPs) is a two-domain protein | 96.67 | |
| TIGR01287 | 275 | nifH nitrogenase iron protein. This model describe | 96.65 | |
| cd03116 | 159 | MobB Molybdenum is an essential trace element in t | 96.64 | |
| TIGR03371 | 246 | cellulose_yhjQ cellulose synthase operon protein Y | 96.64 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 96.64 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 96.62 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 96.62 | |
| PRK13230 | 279 | nitrogenase reductase-like protein; Reviewed | 96.6 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 96.59 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 96.58 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 96.54 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 96.53 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 96.53 | |
| PF06564 | 243 | YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ p | 96.52 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 96.52 | |
| PLN02231 | 534 | alanine transaminase | 96.51 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 96.48 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 96.44 | |
| PRK14493 | 274 | putative bifunctional molybdopterin-guanine dinucl | 96.42 | |
| COG1348 | 278 | NifH Nitrogenase subunit NifH (ATPase) [Inorganic | 96.41 | |
| PRK13231 | 264 | nitrogenase reductase-like protein; Reviewed | 96.41 | |
| PRK13233 | 275 | nifH nitrogenase reductase; Reviewed | 96.4 | |
| PRK13849 | 231 | putative crown gall tumor protein VirC1; Provision | 96.4 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 96.38 | |
| PRK13236 | 296 | nitrogenase reductase; Reviewed | 96.37 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 96.36 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 96.34 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 96.33 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 96.31 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 96.3 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 96.27 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 96.26 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 96.24 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 96.23 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 96.21 | |
| PF07015 | 231 | VirC1: VirC1 protein; InterPro: IPR009744 This fam | 96.18 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 96.15 | |
| PRK13768 | 253 | GTPase; Provisional | 96.09 | |
| PRK13235 | 274 | nifH nitrogenase reductase; Reviewed | 96.08 | |
| PF00142 | 273 | Fer4_NifH: 4Fe-4S iron sulfur cluster binding prot | 96.07 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 96.06 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 96.05 | |
| PF07755 | 301 | DUF1611: Protein of unknown function (DUF1611); In | 96.03 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 95.98 | |
| PLN02368 | 407 | alanine transaminase | 95.95 | |
| PRK14491 | 597 | putative bifunctional molybdopterin-guanine dinucl | 95.89 | |
| COG3367 | 339 | Uncharacterized conserved protein [Function unknow | 95.88 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 95.86 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 95.83 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 95.79 | |
| PLN02263 | 470 | serine decarboxylase | 95.75 | |
| PRK13234 | 295 | nifH nitrogenase reductase; Reviewed | 95.72 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 95.47 | |
| COG1763 | 161 | MobB Molybdopterin-guanine dinucleotide biosynthes | 95.38 | |
| PF03205 | 140 | MobB: Molybdopterin guanine dinucleotide synthesis | 95.11 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 94.96 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 94.91 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 94.82 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 94.72 | |
| TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 94.61 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 94.58 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 94.58 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 94.53 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 94.52 | |
| COG2403 | 449 | Predicted GTPase [General function prediction only | 94.5 | |
| KOG0780 | 483 | consensus Signal recognition particle, subunit Srp | 94.42 | |
| PRK13886 | 241 | conjugal transfer protein TraL; Provisional | 94.34 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracell | 94.27 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 94.27 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 94.22 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 94.13 | |
| cd03114 | 148 | ArgK-like The function of this protein family is u | 94.09 | |
| cd01983 | 99 | Fer4_NifH The Fer4_NifH superfamily contains a var | 94.0 | |
| KOG2749 | 415 | consensus mRNA cleavage and polyadenylation factor | 93.93 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 93.92 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 93.91 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 93.82 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 93.73 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 93.7 | |
| PRK10463 | 290 | hydrogenase nickel incorporation protein HypB; Pro | 93.3 | |
| TIGR00073 | 207 | hypB hydrogenase accessory protein HypB. HypB is i | 93.21 | |
| COG0378 | 202 | HypB Ni2+-binding GTPase involved in regulation of | 92.95 | |
| PRK08760 | 476 | replicative DNA helicase; Provisional | 92.84 | |
| PRK05595 | 444 | replicative DNA helicase; Provisional | 92.81 | |
| PRK08506 | 472 | replicative DNA helicase; Provisional | 92.39 | |
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 92.37 | |
| PF01695 | 178 | IstB_IS21: IstB-like ATP binding protein; InterPro | 92.2 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 92.08 | |
| PRK05636 | 505 | replicative DNA helicase; Provisional | 91.91 | |
| PRK10751 | 173 | molybdopterin-guanine dinucleotide biosynthesis pr | 91.68 | |
| PLN02397 | 423 | aspartate transaminase | 91.63 | |
| TIGR00665 | 434 | DnaB replicative DNA helicase. This model describe | 91.61 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 91.59 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 91.53 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 91.49 | |
| COG1066 | 456 | Sms Predicted ATP-dependent serine protease [Postt | 91.49 | |
| TIGR03600 | 421 | phage_DnaB phage replicative helicase, DnaB family | 90.92 | |
| PRK14489 | 366 | putative bifunctional molybdopterin-guanine dinucl | 90.73 | |
| PF03796 | 259 | DnaB_C: DnaB-like helicase C terminal domain; Inte | 90.69 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 90.59 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 90.54 | |
| PRK09165 | 497 | replicative DNA helicase; Provisional | 90.35 | |
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 90.11 | |
| PHA02542 | 473 | 41 41 helicase; Provisional | 90.0 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 89.99 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 89.85 | |
| PRK08006 | 471 | replicative DNA helicase; Provisional | 89.8 | |
| cd00984 | 242 | DnaB_C DnaB helicase C terminal domain. The hexame | 89.77 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 89.55 | |
| PRK06526 | 254 | transposase; Provisional | 89.43 | |
| PRK08727 | 233 | hypothetical protein; Validated | 89.41 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 89.4 | |
| TIGR03453 | 387 | partition_RepA plasmid partitioning protein RepA. | 89.31 | |
| cd02042 | 104 | ParA ParA and ParB of Caulobacter crescentus belon | 89.27 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 89.12 | |
| PRK08939 | 306 | primosomal protein DnaI; Reviewed | 89.05 | |
| PRK12377 | 248 | putative replication protein; Provisional | 88.82 | |
| PRK05748 | 448 | replicative DNA helicase; Provisional | 88.8 | |
| PF02492 | 178 | cobW: CobW/HypB/UreG, nucleotide-binding domain; I | 88.78 | |
| PRK10037 | 250 | cell division protein; Provisional | 88.68 | |
| PRK06904 | 472 | replicative DNA helicase; Validated | 88.58 | |
| PF13614 | 157 | AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ | 88.38 | |
| PRK13705 | 388 | plasmid-partitioning protein SopA; Provisional | 88.32 | |
| PF01583 | 156 | APS_kinase: Adenylylsulphate kinase; InterPro: IPR | 88.31 |
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-112 Score=1000.94 Aligned_cols=662 Identities=61% Similarity=0.989 Sum_probs=544.2
Q ss_pred cCCCCCCCCCCCCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCCChHHHHHHhcCCCccc
Q 005009 24 STFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLR 103 (719)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~d~~~~~~~~~~~~~~ 103 (719)
+.-+..+..++.+.+.+||||||||||||+||++|++++. ++|.+|.|+||||||+++++|+.++.+.+..+..+
T Consensus 14 ~~~~~~~~~~~~~~~~~fI~GtnT~VGKT~vS~~L~~~~~-----~~g~~~~y~KPvqTG~~~~~Da~~v~~~~~~~~~~ 88 (817)
T PLN02974 14 SSSSSAAGALPLSCPAFAVWGANTAVGKTLVSAGLAAAAA-----SRRSPVLYVKPVQTGFPDDSDARFVFRKADSLSRR 88 (817)
T ss_pred cCCCcccccccCCCceEEEEECCCCCCHHHHHHHHHHHHH-----HcCCceEEEEEEECCCCCCccHHHHHHhhhccccc
Confidence 4446788899999999999999999999999999999994 78999999999999999899999998876443222
Q ss_pred cCCCccccccchhhhhhHHHhhhhccCCCCCCCCccCCcccccccccccccccCCCCCccccccccceeecccCcChHHH
Q 005009 104 RNFPSSLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLA 183 (719)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a 183 (719)
-.++..+|.++..+..++ ..+..-..+... +.-+|+..+ ++....++.|.++|.|++|+|||+|
T Consensus 89 ---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~g~~------~~~~~~~~~~~~~~~~~~p~SPhlA 152 (817)
T PLN02974 89 ---SESLFASNRTLFLSPPAA-KSALGGVSSMGA------HAAVNAGAE------AGVTSSALWCHTLFAWRRAVSPHLA 152 (817)
T ss_pred ---cccccccccccccccccc-cccccccccccc------ccccccccc------cccccccccccCceecCCCCCHHHH
Confidence 356788899988887666 222222222221 111111111 1111234677899999999999999
Q ss_pred HhHhcCCCCCHHHHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCCh
Q 005009 184 AERESGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGG 263 (719)
Q Consensus 184 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~ 263 (719)
++++ |..+++++|.+.+.++++.. ++.+.++.+|++|||||||+++|++++.+++||++.+++|||||++.+||+
T Consensus 153 A~~e-g~~i~~~~i~~~~~~~l~~~----~~~~~~~~~d~vlVEGAGGl~vPl~~~~~~~Dl~~~l~lPvILV~~~~LG~ 227 (817)
T PLN02974 153 ARRE-GRGVSDDEVLEAVNRSLREV----GANESGGGRVLALVETAGGVASPGPSGTLQCDLYRPLRLPAILVGDGRLGG 227 (817)
T ss_pred HHHh-CCCCCHHHHHHHHHHHHHhh----hcccccccCCeEEEECCCcccccCCCCCCHHHHHHHhCCCEEEEECCCCCH
Confidence 9999 99999999999998865431 011112458999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEccCCCCCHHHHHHhhcCCCcEEecCCCCCCCcchhhhhhhhchhhhhhHHHHHHHHH
Q 005009 264 ISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDSSNDLMEWFDESHNVFDSLKNIMLLAY 343 (719)
Q Consensus 264 i~~~~~~~~~l~~~~~~v~gvi~N~~~~~~~~~l~~~~~~~~pvlglP~~~~~~~~~~~~~l~~~~~~v~~Ll~~l~~~~ 343 (719)
||||++++|+|+.||++|.|||+|+...+|.++|++++++++||+.+|+.|+...+++.+|++.....|..+++.+..++
T Consensus 228 INhtllt~eaL~~rGi~v~gii~~~~~~~N~~~l~~~~~~~~pv~~lp~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (817)
T PLN02974 228 ISATLAAYESLLLRGYDVVAVVIEDHGLSNEKALLSYLSNRVPVFVLPPVPEDPGDDLDEWFDDSKSTFDALLDALQSWH 307 (817)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEeCCccchHHHHHHHHhcCCcEEeCCCCCCCcchhHHHHHHhcchhHHHHHHHHHHHH
Confidence 99999999999999999999999988889999999999889999999999988878899999988888999999999999
Q ss_pred HHHHHhhcccchhhCCCccccCCCCCCCCCCCeEEEEeecCC--ceEEEeCCCCcccceeeeccccccccCCC-CCCCHH
Q 005009 344 SERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGE--NFSVYQDQKNKFIGQQFDACASWWTQGPD-ATLQIE 420 (719)
Q Consensus 344 ~~r~~rl~~L~e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~--g~~l~D~dG~~~~~~yLD~~sg~~~~~lG-H~~hP~ 420 (719)
.+|.++++.|.+++++++||||+|++.++.+.|.+|++++|. -.|++|.+|++..++|||+++|||++++| |+ ||+
T Consensus 308 ~~r~~~~~~~~~~a~~~iw~Pftq~~~~~~~~~~vi~~a~G~~~~~~~~d~~G~~~~~~ylD~~sg~w~~~lG~h~-~p~ 386 (817)
T PLN02974 308 SGRLQRLQSMPKEAGEVLWWPFTQHALVPRDSVTVIDSRCGEDFSVYKPKTNSTCSIVQQFDACASWWTQGPDPTL-QPE 386 (817)
T ss_pred HHHhHHHHHHHHHHhhhccCCcccccccCCCCceEEEeeecCceeEEEECCCCCcccceEEEcchhHHHhCCCcCC-CHH
Confidence 999999999999999999999999998766678999998885 13789999943445899999999999999 68 999
Q ss_pred HHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCc
Q 005009 421 LARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDT 500 (719)
Q Consensus 421 V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~ 500 (719)
|++|+++|++++.|+++..+.|+++.+|||+|++..|.++++||||++|||||||+|||||+|+|+.++|......+...
T Consensus 387 I~~Ai~~Qa~rl~hv~~~~~~hepa~~LAe~L~~~~~~~~l~rVffs~sGSeAvE~AlKmA~r~y~~~~G~~~~~~~~~~ 466 (817)
T PLN02974 387 LARAVAYAAGRYGHVMFPENVHEPALRAAELLLGGPGKGWASRVFFSDNGSTAIEVALKMAFRKFIVDHGFLENSGNEKR 466 (817)
T ss_pred HHHHHHHHHhhCCccccCccCCHHHHHHHHHHHhccCCCCCCEEEECCchHHHHHHHHHHHHHHHHHhcCCCcccccccc
Confidence 99999999999999987778999999999999996654557899999999999999999997668766553000000000
Q ss_pred cccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccc
Q 005009 501 TEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITF 580 (719)
Q Consensus 501 ~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~ 580 (719)
....+|.+||+++++|||.|+|+|++++.+.|+..++.+|+.+.+.++++|...++++.+++++|+.+++.... .+..|
T Consensus 467 ~~~~~r~kIIa~~gsYHG~T~GAms~sg~~~~~~~~~~p~~~~~~~~~~~P~~~~~~~~~~~~~p~~~~~~~~~-~~~~~ 545 (817)
T PLN02974 467 GGDLIELKVLALDGSYHGDTLGAMEAQAPSVFTGFLQQPWYSGRGLFLDPPTVGMRNGRWNISLPEGFSSGLEG-EETTW 545 (817)
T ss_pred cccCCCCEEEEECCCcCCCCHHHHhhCCchhhhcccccccccCCCcccCCCccccccccccccCCccccccccc-ccccc
Confidence 00025889999999999999999999998777765446788777888888877767778888888765431000 00113
Q ss_pred cCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEe
Q 005009 581 CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFD 660 (719)
Q Consensus 581 ~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~D 660 (719)
.+.+++|+..++.+++...|.+++++.|++....+++++|||||+|||+||+||+++||++|+++||++|++||++||+|
T Consensus 546 ~~~~~~f~~~r~~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~D 625 (817)
T PLN02974 546 ESRDEVFDKTRDSTPLAKAYRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFD 625 (817)
T ss_pred ccccccccccccchhhhHHHHHHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEe
Confidence 33334454345556777888899999987532223568899999999669999999999999999999999999999999
Q ss_pred ccccCccccCccccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 661 EVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 661 EVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
||||||||||+||+++++||+|||+|+||+|||||+|+||++++++|++.|.+
T Consensus 626 EV~TGfGRtG~~fa~e~~gv~PDIi~~gKgLtgG~~Plaa~l~~~~I~~~f~~ 678 (817)
T PLN02974 626 EVFTGLWRLGVESAWELLGCKPDIACYAKLLTGGLVPLAATLATEEVFEAFRG 678 (817)
T ss_pred ecccCCCcccchhhHHhcCCCCCEEeecccccCCCCccEEEEEcHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999964
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-71 Score=602.77 Aligned_cols=302 Identities=30% Similarity=0.437 Sum_probs=264.3
Q ss_pred hhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccc
Q 005009 356 RAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHV 435 (719)
Q Consensus 356 ~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~ 435 (719)
.+.+++||||++++...+. |.+|++++|. |+||.||| +|||.+|||||+++||+ ||+|.+|+++|++++.|+
T Consensus 8 ~d~~~~whP~t~~~~~~~~-~~~i~~aeG~--yl~d~~G~----r~lDg~sg~W~~~~Gh~-~~~i~~Ai~~Q~~~l~~~ 79 (449)
T COG0161 8 ADLSHLWHPFTQMRDPLAE-PRVIVRAEGV--YLTDIDGR----RYLDGMSGLWCVNHGHG-RPEIAEAIKKQLDKLPHV 79 (449)
T ss_pred hhhhheecccccccccccc-ceeeeeccee--EEEeCCCC----EEEecccHHHHhhcCcC-CHHHHHHHHHHHHhCCch
Confidence 3888999999999886545 8899887775 89999999 99999999999999999 999999999999999999
Q ss_pred cCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCC
Q 005009 436 MFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGS 515 (719)
Q Consensus 436 ~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~s 515 (719)
++..++++++++||++|++++|++.+++|||++|||||||.||||| ++|+..+|. ++|++||+++++
T Consensus 80 ~~~~~t~~Pa~~LA~~L~~~aP~~~l~~vFf~~sGSeAvEtAlKma-~qY~~~~G~------------p~r~~~Isr~~g 146 (449)
T COG0161 80 MFGGFTHEPAIELAEKLAELAPEGGLDHVFFTDSGSEAVETALKMA-LQYWRARGQ------------PQRKKFISRRNG 146 (449)
T ss_pred hhcccCCchHHHHHHHHHHhCCCCCccEEEEeCCchHHHHHHHHHH-HHHHHhcCC------------CcceEEEEeccC
Confidence 8888899999999999999999555899999999999999999999 788887776 779999999999
Q ss_pred cccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchh
Q 005009 516 YHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSD 595 (719)
Q Consensus 516 yHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~ 595 (719)
|||.|.+++|++|....+.. + ++++ .++..+++.|+.|+.+. ++ ...++
T Consensus 147 YHG~T~ga~Sv~g~~~~~~~----~-------~~~l----l~~~~~~~~P~~y~~~~--------~~--------~~~~~ 195 (449)
T COG0161 147 YHGDTLGAMSVGGPVALRHA----F-------YDPL----LPEVLHLPAPYAYRRGF--------FG--------EGDEE 195 (449)
T ss_pred cCcccchheeccCchhhhhh----h-------cccc----ccCceecCCCcccccCC--------CC--------CChHH
Confidence 99999999999995544321 1 2211 23557888888875321 11 11223
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccc
Q 005009 596 LASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA 675 (719)
Q Consensus 596 ~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~ 675 (719)
. ..+++.||+.|.+ .++++|||||+|||+||+||+++||++||+++|++|++||||||+|||+|||||||++|++
T Consensus 196 ~-~~~a~~le~~i~~----~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~~FA~ 270 (449)
T COG0161 196 F-AEAADELEALILE----HGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGKMFAC 270 (449)
T ss_pred H-HHHHHHHHHHHHh----cCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCchhhhh
Confidence 3 4678899999986 5679999999999977779999999999999999999999999999999999999999999
Q ss_pred cccCCCcceeeehhccCCCccchheeEeCHHHHhhhcCC
Q 005009 676 DLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD 714 (719)
Q Consensus 676 e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~~ 714 (719)
+++||+|||+|+||||||||+||||++++++|++.|..+
T Consensus 271 e~~gi~PDi~~~aKGLT~GY~Pl~a~l~~~~I~~~~~~~ 309 (449)
T COG0161 271 EHAGIVPDILCLAKGLTGGYLPLSAVLTSDRIYEAFSDG 309 (449)
T ss_pred hhcCCCCCeeeecccccccchhhHhHhhhHHHHHHHhcc
Confidence 999999999999999999999999999999999999887
|
|
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-65 Score=548.08 Aligned_cols=253 Identities=30% Similarity=0.394 Sum_probs=224.0
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++| +|+||.+|+ +||||.+|+++++|||| ||+|++|+++|++++.|.+ +.+.+++..+|+++|++
T Consensus 24 ~~~~~~~G~G--~~v~D~~G~----~YlDf~~Giav~~lGH~-hP~iv~al~~Q~~kl~h~s-n~~~~~~~~~la~~L~~ 95 (404)
T COG4992 24 LPVVIVRGEG--AYVWDQQGR----EYLDFAAGIAVNNLGHC-HPALVEALKEQAEKLWHVS-NLFYNEPQAELAEKLVE 95 (404)
T ss_pred CceeEEeccc--cEEECCCCC----EeeeeccceeeeccCCC-CHHHHHHHHHHHHHhhhcc-cccCChHHHHHHHHHHh
Confidence 3567777665 489999999 99999999999999999 9999999999999999987 46889999999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
.+| ++++|||||||+||||+|||+| |+|++. ++|.+||+|+++|||+|++++|+|+.+.|++
T Consensus 96 ~s~--~~d~vff~NSGaEA~EaAiKlA-Rk~~~~---------------~~k~~Iia~~nsFHGRT~galS~t~~~ky~~ 157 (404)
T COG4992 96 LSP--FADRVFFCNSGAEANEAALKLA-RKYTGD---------------PEKSKIIAFENSFHGRTLGALSATGQPKYRK 157 (404)
T ss_pred hCc--cccEEEEcCCcHHHHHHHHHHH-HHHcCC---------------CCCcEEEEEcCCcCCccceeeeccCChhhcc
Confidence 997 3799999999999999999999 788761 5678999999999999999999999887776
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
+ +.|. .+++.+ ++|||. +++++++.
T Consensus 158 ~--------F~Pl--------~~g~~~----------------vpfnDi------------------~al~~ai~----- 182 (404)
T COG4992 158 G--------FGPL--------LPGFRH----------------VPFNDI------------------EALEAAID----- 182 (404)
T ss_pred C--------CCCC--------CCCcee----------------cCCCCH------------------HHHHHHhc-----
Confidence 4 1111 112222 348884 67888875
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
+++||||+||| ||+||+++||++||+++|+||++||+|||+||||||+||||+||++||+||+|||+|+||+||||
T Consensus 183 ---~~taAvivEPI-QGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA~e~~gV~PDI~tlaK~LgGG 258 (404)
T COG4992 183 ---EDTAAVIVEPI-QGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVEPDILTLAKALGGG 258 (404)
T ss_pred ---cCeEEEEEecc-cCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHHHHHHhCCCCCEEEeeccccCC
Confidence 38999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchheeEeCHHHHhhhcC
Q 005009 695 VIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~~ 713 (719)
+|+||+++++++++.|..
T Consensus 259 -~PigA~la~~~~~~~~~~ 276 (404)
T COG4992 259 -FPIGAMLATEEIASAFTP 276 (404)
T ss_pred -ccceeeEEchhhhhcCCC
Confidence 899999999887887754
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-64 Score=551.88 Aligned_cols=277 Identities=26% Similarity=0.367 Sum_probs=240.3
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. |+||+||| +||||.+|+++.++||| ||+|++|+++|++++.|.++....+++..++||+|.+
T Consensus 38 ~p~~~~ra~G~--~l~DvdG~----~ylDf~sgi~v~~~GH~-hP~Vv~Av~~q~~~~~h~~~~~~~~e~~v~~ae~L~~ 110 (447)
T COG0160 38 FPLVIVRAEGA--YLYDVDGN----EYLDFLSGIAVLNLGHN-HPRVVEAVKRQLAKLNHTHTRDLYYEPYVELAEKLTA 110 (447)
T ss_pred CcceEEecccC--EEEeCCCC----EEEEcccCcchhccCCC-CHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHH
Confidence 47788888776 89999999 99999999999999999 9999999999999999877555556999999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
.+|....++++|+||||||||+|||+| |.||++ ..||+|.++|||+|.+++|+|+....+.
T Consensus 111 ~~p~~~~~~~~f~~sGaeA~E~AiKiA-r~~Tgr------------------~~viaf~~afHG~T~galslT~~~~~~~ 171 (447)
T COG0160 111 LAPGSGLKKVFFGNSGAEAVEAAIKIA-RAYTGR------------------PGVIAFDGAFHGRTLGALSLTGSKPPYK 171 (447)
T ss_pred hCCcccCCeEEecCCcHHHHHHHHHHH-HHHhCC------------------CcEEEECCcccccchhhHHhccCccccc
Confidence 998744789999999999999999999 899876 4799999999999999999998654332
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
.+++++ .++++++|+|++|+|+.. . +.+++...+.+++++.+....
T Consensus 172 -------~~~~~~--------~~~v~~~Pyp~~yr~p~~--------~---------~~~~~~~~~~~~~e~~i~~~~-- 217 (447)
T COG0160 172 -------AGFGPL--------PPGVYHVPYPNPYRCPFG--------I---------GGEECGDDALEYIERALFDLE-- 217 (447)
T ss_pred -------cCCCCC--------CCCeEEecCCccccCccc--------C---------chhhhhHHHHHHHHHHHHhhc--
Confidence 122221 235789999999987521 1 113556667788888776532
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
.+++++||||+||| ||+||+++||++||++|+++|+||||+||+|||||||||||+||++||+||+|||||+||+||||
T Consensus 218 ~~~~~vAaiI~EpI-QgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~~fa~E~~gv~PDivt~aK~ig~G 296 (447)
T COG0160 218 VGPEEVAAIIIEPI-QGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLAKSLGGG 296 (447)
T ss_pred CCCCceeEEEEecc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccccchhhhhcCCCCCEEEecccccCC
Confidence 56789999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchheeEeCHHHHhhhcC
Q 005009 695 VIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~~ 713 (719)
+|||+|++++++++++.+
T Consensus 297 -~Pl~avv~r~ei~~~~~g 314 (447)
T COG0160 297 -LPLSAVVGRAEIMDWPPG 314 (447)
T ss_pred -CceeEEeccHHhcccCCc
Confidence 899999999999995443
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-62 Score=547.85 Aligned_cols=304 Identities=19% Similarity=0.239 Sum_probs=250.8
Q ss_pred ccchhhCCCccccCCCCCCCCC--CCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhh
Q 005009 352 DMPKRAGELFWWPFTQHKLVPE--EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTA 429 (719)
Q Consensus 352 ~L~e~~~~~~~~p~~~~~~~~~--~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~ 429 (719)
.+.+++.+++|+|++++..+.. ..|+++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~--~l~D~dG~----~ylD~~sg~~~~~lGh~-~p~v~~Av~~q~ 79 (461)
T PRK07482 7 ELLAWDRDHFFHPSTHLGDHARGELPGRIVEGGEGI--RITDAQGR----RYIDAFAGLYCVNVGYG-RTEVAEAIAEQA 79 (461)
T ss_pred HHHHhhhhhccCCcccccccccccCCCeeEEeeeee--EEEECCCC----EEEEcccchhhhcCCCC-CHHHHHHHHHHH
Confidence 4445566789999987755432 247888887775 89999999 99999999999999999 999999999999
Q ss_pred hhccccc-CCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceE
Q 005009 430 ARFGHVM-FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELK 508 (719)
Q Consensus 430 ~~~~~~~-~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~k 508 (719)
+++.+.+ +..+.+++..+|||+|++.+|.+ +++|+|+||||||||+|||+| |+|+..+|. ++|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~-~~~v~f~~sGSEAve~AlKlA-r~~~~~~g~------------~~r~~ 145 (461)
T PRK07482 80 KELAYYHTYVGHGTEASITLSKRIIDRAPAG-MSKVYYGLSGSDANETQIKLV-WYYNNVLGR------------PEKKK 145 (461)
T ss_pred HhcCccccccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCchHHHHHHHHHHH-HHHHHhcCC------------CCCce
Confidence 9987543 23567999999999999998754 689999999999999999999 788755443 56889
Q ss_pred EEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhh
Q 005009 509 VLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFY 588 (719)
Q Consensus 509 II~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~ 588 (719)
||+|+++|||+|.+++++++...++.. + .++. ++..+++.|++++++. .+
T Consensus 146 Ii~~~~~YHG~t~ga~s~~~~~~~~~~--------~----~~~~----~~~~~~~~p~~~~~~~-------~~------- 195 (461)
T PRK07482 146 IISRWRGYHGSGVVTGSLTGLSLFHQH--------F----DLPI----ARVLHTEAPHYYRRAD-------AG------- 195 (461)
T ss_pred EEEecCccCCccHhhhhccCCchhhhc--------c----CCCC----CCCEEcCCCccccccc-------cC-------
Confidence 999999999999999999986544432 1 1111 2345667776654321 00
Q ss_pred cccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccc
Q 005009 589 EERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR 668 (719)
Q Consensus 589 ~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGR 668 (719)
...+.+...+++.+++.+++ .++++|||||+||| ||+||+++||++||++||++|++||+|||+|||||||||
T Consensus 196 --~~~~~~~~~~~~~l~~~~~~----~~~~~iAAvi~EPv-qg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGR 268 (461)
T PRK07482 196 --MSEEQFSAYCADELEELILA----EGPDTIAAFIAEPV-LGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGR 268 (461)
T ss_pred --CCHHHHHHHHHHHHHHHHHh----cCCCcEEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCc
Confidence 01123445567888888863 34678999999998 999999999999999999999999999999999999999
Q ss_pred cCccccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 669 LGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 669 tG~~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
||+||+++++||+|||+|+||+|||||+|+||+++++++++.|..
T Consensus 269 tG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~ 313 (461)
T PRK07482 269 LGSMFGSDHYGIEPDLITVAKGLTSAYAPLSGSIVGEKVWDVLEQ 313 (461)
T ss_pred CcchhhHHhcCCCCCEEEEccccccCccccceeeecHHHHHHHhc
Confidence 999999999999999999999999998899999999999998853
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-61 Score=545.01 Aligned_cols=302 Identities=24% Similarity=0.358 Sum_probs=252.7
Q ss_pred hhhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhccc
Q 005009 355 KRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGH 434 (719)
Q Consensus 355 e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~ 434 (719)
+.+.+++||||+++..+....|.++++++|. ||||.||| +||||++|+|++++||+ ||+|++|+++|++++.+
T Consensus 4 ~~~~~~~w~p~~~~~~~~~~~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~ql~~~~~ 76 (449)
T PRK07481 4 SNNARRFWHPMAHPAEMKARPPIIIVRGDGV--YVYDIDGK----KLLDGVGGLWNVNVGHN-REEVKEAIVRQLDELEY 76 (449)
T ss_pred ccccccccCCcccccccccCCCceEEecccc--EEEeCCCC----EEEECchhHHhhcCCCC-CHHHHHHHHHHHHhccc
Confidence 3567889999999987654568888887775 89999999 99999999999999999 99999999999999877
Q ss_pred ccC-CCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEe
Q 005009 435 VMF-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALK 513 (719)
Q Consensus 435 ~~~-~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~ 513 (719)
.+. ..+.+++..+||++|++.+|.+.+++|+|++|||||||+|||+| |.|++.+|. ++|.+||+|+
T Consensus 77 ~~~~~~~~~~~~~~lae~L~~~~~~~~~~~v~f~~sGsEAve~AlklA-r~~~~~~g~------------~~r~~ii~~~ 143 (449)
T PRK07481 77 YSTFDGTTHPRAIELSYELIDMFAPEGMRRVFFSSGGSDSVETALKLA-RQYWKVRGQ------------PERTKFISLK 143 (449)
T ss_pred eecccccCCHHHHHHHHHHHHhcCCCCCCEEEEcCchHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEEC
Confidence 642 24689999999999999885333789999999999999999999 788765543 5678999999
Q ss_pred CCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCc
Q 005009 514 GSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDS 593 (719)
Q Consensus 514 ~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~ 593 (719)
++|||+|.+++++++...++.. +.+ ..+++.+++.|+.+++ +||. .|.
T Consensus 144 ~~yHG~t~ga~s~~~~~~~~~~--------~~~--------~~~g~~~~~~~~~~~~--------~~~~--------~d~ 191 (449)
T PRK07481 144 QGYHGTHFGGASVNGNTVFRRN--------YEP--------LLPGCFHVETPWLYRN--------PFTE--------QDP 191 (449)
T ss_pred CCcCCcchhhhccCCCcccccc--------cCC--------CCCCCEEeCCCccccc--------ccCC--------CCH
Confidence 9999999999999986544331 111 1134556677766543 2441 112
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc
Q 005009 594 SDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET 673 (719)
Q Consensus 594 ~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~ 673 (719)
+.+...+.+.+|+.|.. .++++|||||+||| ||+||+++||++||++||++|++||++||+|||||||||||++|
T Consensus 192 ~~~~~~~~~~le~~i~~----~~~~~iAAviiEPv-qg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~ 266 (449)
T PRK07481 192 EELARICARLLEREIAF----QGPDTIAAFIAEPV-QGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWF 266 (449)
T ss_pred HHHHHHHHHHHHHHHHh----cCCCcEEEEEEecc-cCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCchhh
Confidence 34445566778888863 35679999999998 99999999999999999999999999999999999999999999
Q ss_pred cccccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 674 TADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 674 a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
+++++|++|||+|+||+|||||+|+||+++++++++.|..
T Consensus 267 a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~ 306 (449)
T PRK07481 267 GSRGWGVKPDIMCLAKGITSGYVPLGATMVNARIADAFEA 306 (449)
T ss_pred HhhhcCCCCCEEEEeecccCCCcCceEEEEcHHHHHHHhc
Confidence 9999999999999999999999999999999999998854
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-61 Score=544.22 Aligned_cols=301 Identities=20% Similarity=0.255 Sum_probs=247.7
Q ss_pred chhhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcc
Q 005009 354 PKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG 433 (719)
Q Consensus 354 ~e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~ 433 (719)
.+++.++.|+|++++.......|.++++++|. |+||.||| +|||+++|+|++++||+ ||+|++|+++|++++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~i~~Ai~~q~~~~~ 79 (459)
T PRK05965 7 IELDRAHLIHPVASYRGHEARGVTVLASAKGA--TLTDASGH----QLLDAFAGLWCVNVGYG-QESIVEAAAEQMRELP 79 (459)
T ss_pred HHhhhhccccccccccccccCCCceEEeeeEe--EEEECCCC----EEEECcccHHhccCCCC-CHHHHHHHHHHHHhcC
Confidence 34456678999876532211347788887775 89999999 99999999999999999 9999999999999987
Q ss_pred cccC-CCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEE
Q 005009 434 HVMF-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (719)
Q Consensus 434 ~~~~-~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~ 512 (719)
+.+. ..+.+++..+||++|++.+|.+ +++|+|+||||||||+|||+| |+|++.+|. ++|.+||+|
T Consensus 80 ~~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~sGSEAve~AlKlA-r~~~~~~g~------------~~r~kii~~ 145 (459)
T PRK05965 80 YATGYFHFGSEPAIRLAAKLAERAPGS-LNHVYFTLGGSDAVDSAVRFI-RHYWNATGR------------PSKKQFISL 145 (459)
T ss_pred CcccccccCCHHHHHHHHHHHhhCCCC-cCEEEEeCChhHHHHHHHHHH-HHHHHhcCC------------CCccEEEEe
Confidence 7553 2467999999999999998754 789999999999999999999 888765543 568899999
Q ss_pred eCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccC
Q 005009 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (719)
Q Consensus 513 ~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d 592 (719)
+++|||+|.+++++|+...++.. +++.. ++..+++.|++|+++ ++ .+
T Consensus 146 ~~~YHG~t~~a~s~t~~~~~~~~--------~~~~~--------~~~~~~~~~~~~~~~--------~~---------~~ 192 (459)
T PRK05965 146 ERGYHGSSSVGAGLTALPAFHRG--------FDLPL--------PWQHKIPSPYPYRNP--------VG---------DD 192 (459)
T ss_pred cCCcCcccHHHHHhcCCchhhcc--------cCCCC--------CCCEEcCCCcccccc--------cC---------CC
Confidence 99999999999999986544432 11111 123456666555432 11 11
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc
Q 005009 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (719)
Q Consensus 593 ~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~ 672 (719)
.+++...|++.+++.|++ .++++|||||+||| ||+||+++||++||++||++|++||++||+|||||||||||+|
T Consensus 193 ~~~~~~~~~~~l~~~i~~----~~~~~iAAvIvEPi-qg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~ 267 (459)
T PRK05965 193 PQAIIAASVAALRAKVAE----LGADNVAAFFCEPI-QGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPL 267 (459)
T ss_pred hHHHHHHHHHHHHHHHHh----cCCCceEEEEEecc-ccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCchh
Confidence 234556677888888874 34579999999997 9999999999999999999999999999999999999999999
Q ss_pred ccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 673 ~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
|+++++|++|||+|+||+|||||+|+||+++++++++.|..
T Consensus 268 ~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~ 308 (459)
T PRK05965 268 FACEAEGVVPDLMTVAKGLTSGYVPMGAVLMSDHVYQGIAD 308 (459)
T ss_pred hhHhhcCCCCCeEEechhhccCCcceeEEEEcHHHHHHHhc
Confidence 99999999999999999999998899999999999998853
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-60 Score=530.84 Aligned_cols=302 Identities=26% Similarity=0.408 Sum_probs=247.8
Q ss_pred cchhhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhc
Q 005009 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (719)
Q Consensus 353 L~e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~ 432 (719)
+.++...++|+|++++..+....|+++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|++++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~ql~~~ 86 (453)
T PRK06943 14 WVARSLRAVWHPCTQMKHHERLPLLPVARGEGA--WLYDRDGR----RYLDAISSWWVNLFGHA-NPRINAALKDQLDTL 86 (453)
T ss_pred HHHHhhcccccCCcCccccccCCCceEEecccC--EEEeCCCC----EEEEcchHHHHhcCCCC-CHHHHHHHHHHHHhc
Confidence 344556778999887644322357888887775 89999999 99999999999999999 999999999999998
Q ss_pred ccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEE
Q 005009 433 GHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (719)
Q Consensus 433 ~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~ 512 (719)
.+.....+.+++..+||++|++.+|.. +++|+|+||||||||+|||+| |+|+..+|. ++|.+||+|
T Consensus 87 ~~~~~~~~~~~~~~~lAe~L~~~~p~~-~~~v~f~~sGseAve~AlKlA-~~~~~~rg~------------~~r~~Ii~~ 152 (453)
T PRK06943 87 EHAMLAGCTHEPAIELAERLAALTGGT-LGHAFFASDGASAVEIALKMS-FHAWRNRGR------------GDKREFVCL 152 (453)
T ss_pred CCccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCCHHHHHHHHHHH-HHHHHHhCC------------CCCCEEEEE
Confidence 877655678999999999999988754 579999999999999999999 666544443 567899999
Q ss_pred eCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccC
Q 005009 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (719)
Q Consensus 513 ~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d 592 (719)
+++|||+|.+++++++...++.. +.+.+ ++..+++.|+.+++. +. ..
T Consensus 153 ~~~yHG~t~gals~~~~~~~~~~--------~~~~~--------~~~~~~~~p~~~~~~--------~~---------~~ 199 (453)
T PRK06943 153 ANGYHGETIGALGVTDVALFKDA--------YDPLI--------RHAHVVASPDARGAR--------PG---------ET 199 (453)
T ss_pred CCCcCCCcHHhhcccCChhhhcc--------cccCC--------CCCEEECCCCccccc--------cC---------CC
Confidence 99999999999999986655542 11111 123456666544321 01 11
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc
Q 005009 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (719)
Q Consensus 593 ~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~ 672 (719)
.+.+...+++.+++.|++ ++++|||||+||++||+||+++||++||++||++|++||++||+|||||||||||+|
T Consensus 200 ~~~~~~~~~~~l~~~l~~-----~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~~ 274 (453)
T PRK06943 200 AADVAARALADVRRLFAE-----RAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTF 274 (453)
T ss_pred HHHHHHHHHHHHHHHHHh-----CCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcch
Confidence 123444566788888873 468999999999439999999999999999999999999999999999999999999
Q ss_pred ccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 673 ~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
|+++++||+|||+|+||+|||||+|+|++++++++++.|..
T Consensus 275 fa~~~~gv~PDivt~gKgl~gG~~Pi~av~~~~ei~~~~~~ 315 (453)
T PRK06943 275 FACEQAGVWPDFLCLSKGISGGYLPLSLVLSRDAIFAAFYD 315 (453)
T ss_pred hHHHhCCCCCCeEeeehhhccCcccceEEEEcHHHHHhhcc
Confidence 99999999999999999999999999999999999998853
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-59 Score=530.89 Aligned_cols=302 Identities=29% Similarity=0.458 Sum_probs=247.5
Q ss_pred cchhhCCCccccCCCCCCCCCC-CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhh
Q 005009 353 MPKRAGELFWWPFTQHKLVPEE-AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAAR 431 (719)
Q Consensus 353 L~e~~~~~~~~p~~~~~~~~~~-~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~ 431 (719)
+.+.+.+++|+|++++...... +|.++++++| +||||.||| +|||+++|+|++++||+ ||+|++|+++|+++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~G--~~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~i~~Ai~~q~~~ 95 (472)
T PRK08742 23 WRQRDLAVLWHPCTQMREHPHTLPLVPIARGEG--AWLVGHDGR----RYLDAVSSWWTNLFGHA-EPRIGAAIAAQAGE 95 (472)
T ss_pred HHHhhhcccccCCcccccccccCCCeeEEeccc--CEEEeCCCC----EEEEcCccHHhccCCCC-CHHHHHHHHHHHHh
Confidence 3445567789999886542211 3466777666 489999999 99999999999999999 99999999999999
Q ss_pred cccccCCCCCChHHHHHHHHHHhccCC----CCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcce
Q 005009 432 FGHVMFPENVYEPALECAELLLQGVGK----GWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIEL 507 (719)
Q Consensus 432 ~~~~~~~~~~~~~~~~Lae~L~~~~~~----~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~ 507 (719)
+.+.....+.+++..+|+++|++.+|. +.+++|+|+||||||||+|||+| |+|+..+|. ++|.
T Consensus 96 l~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~~~~~v~f~~sGSEAvE~AlKlA-r~~~~~~g~------------~~r~ 162 (472)
T PRK08742 96 LEQVMLAGFTHEPAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMA-FHYFHNRGE------------HRRT 162 (472)
T ss_pred CCCccccccCCHHHHHHHHHHHHhCCCcccCCCCCEEEEeCCchHHHHHHHHHH-HHHHHhcCC------------CCCc
Confidence 887654467899999999999998864 23689999999999999999999 778765543 5688
Q ss_pred EEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchh
Q 005009 508 KVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIF 587 (719)
Q Consensus 508 kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~ 587 (719)
+||+|+++|||+|.+++++++...++.. +.++ .++..++|.|+.+++.. ..
T Consensus 163 ~ii~~~~syHG~t~gals~~~~~~~~~~--------~~p~--------~~~~~~~~~p~~~~~~~--------~~----- 213 (472)
T PRK08742 163 RFIALENGYHGETIGALAVGDIPLYRRV--------YAPL--------LLESLFAPSPDAYLAEP--------GQ----- 213 (472)
T ss_pred EEEEECCCcCCCchhhhhccCCcccccc--------cCCC--------CCCCEEeCCCCcccccc--------CC-----
Confidence 9999999999999999999986554432 1111 12345677777665421 11
Q ss_pred hcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCcc
Q 005009 588 YEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFW 667 (719)
Q Consensus 588 ~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfG 667 (719)
..++....+.+.+++.+++ .+++|||||+||++||+||+++||++||++||++|++||++||+||||||||
T Consensus 214 ----~~~~~~~~~~~~l~~~~~~-----~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfG 284 (472)
T PRK08742 214 ----SAEDYALQAADALQALFEQ-----SPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFG 284 (472)
T ss_pred ----CHHHHHHHHHHHHHHHHHh-----CCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCC
Confidence 1123334466788888863 4679999999994499999999999999999999999999999999999999
Q ss_pred ccCccccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhc
Q 005009 668 RLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 668 RtG~~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
|||+||+++++|++|||+|+||+|||||+|+||+++++++++.|.
T Consensus 285 RtG~~~a~e~~gv~PDiv~~gKgl~gG~~Plaav~~~~ei~~~~~ 329 (472)
T PRK08742 285 RTGTLFACEQAGVMPDLLCLSKGLTGGFLPLSAVLATQQLYDAFL 329 (472)
T ss_pred CCccchHHHhcCCCCCEEEEcccccCCCCCcceeeccHHHHHHhh
Confidence 999999999999999999999999999889999999999999885
|
|
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-60 Score=499.57 Aligned_cols=276 Identities=25% Similarity=0.328 Sum_probs=242.2
Q ss_pred CCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHH
Q 005009 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (719)
Q Consensus 374 ~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~ 453 (719)
..|.+|++++|. ||||.+|+ +|||+.+|++++++||| ||+|++|+.+|+.++.|.+ ..+.+++..+||++|+
T Consensus 31 ~~Pl~Iv~~~~~--ylyDe~G~----ryLD~f~Gi~tvslGHc-hP~v~~a~~kQl~~l~H~t-~~~~~~pi~~~Ae~L~ 102 (442)
T KOG1404|consen 31 KKPLVIVRGEGQ--YLYDEEGR----RYLDAFGGIVTVSLGHC-HPDVVAAAVKQLKKLYHTT-SGYLNPPIHDLAEALV 102 (442)
T ss_pred cCCceEEecceE--EEEcCCCc----eeehhhCCeEEEEcCCC-ChHHHHHHHHhhhhhEEee-ccccCCcHHHHHHHHH
Confidence 468899887775 89999999 99999999999999999 9999999999999888865 5788999999999999
Q ss_pred hccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCC
Q 005009 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (719)
Q Consensus 454 ~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~ 533 (719)
+.+|.+ +.++||+||||||||.||||| |.|+++ .+||+++++|||.|..++++|+.+.++
T Consensus 103 s~~P~~-l~~vfF~nsGsEANelal~ma-r~Yt~~------------------~diIa~r~~YHG~t~~t~glt~~~~~k 162 (442)
T KOG1404|consen 103 SKLPGD-LKVVFFVNSGSEANELALKMA-RLYTGN------------------LDIIARRNSYHGNTLYTLGLTGLSPWK 162 (442)
T ss_pred HhCCCC-ceEEEEecCCchHHHHHHHHH-HHhcCC------------------ceEEEeeccccCCchhhcccccCCccc
Confidence 999876 789999999999999999999 899865 499999999999999999999876555
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
.. + |. ...+.++..-|++||.. |.+. ..++..++|.+.+++.+..
T Consensus 163 ~~------------~--~~--~~~~~~~~~~Pdp~r~~--------~~~~--------~~~e~~d~~a~~l~d~i~~--- 207 (442)
T KOG1404|consen 163 QN------------F--PG--VASGVHHTMNPDPYRGI--------FGGS--------NEEEASDRYAKELEDLILY--- 207 (442)
T ss_pred cc------------C--CC--CCCcccccCCCCccccc--------CCCC--------chhhhHHHHHHHHHHHHHh---
Confidence 42 0 11 11356778889888763 3321 1345667777888887764
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCC
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lgg 693 (719)
..++.|||+|+||| ||.||++.+|++||++++++|+|+|+++|+|||||||||||.||+||++|+.|||+|++|+|||
T Consensus 208 -~~~~~vAafiaEtI-qGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG~~wgfe~h~v~PDIvTmAKgiGn 285 (442)
T KOG1404|consen 208 -DGPETVAAFIAETI-QGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTGHMWGFESHGVVPDIVTMAKGIGN 285 (442)
T ss_pred -cCCCceeEEEeehh-ccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhccccccccccccccCCCccHHHHHhhccC
Confidence 56788999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchheeEeCHHHHhhhcCCC
Q 005009 694 GVIPLAATLATNAVFDSFVGDS 715 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~~~~ 715 (719)
| +|||||++++||++.|...+
T Consensus 286 G-~Pl~AVvtt~EIa~v~~~~~ 306 (442)
T KOG1404|consen 286 G-FPLGAVVTTPEIADVLNQKS 306 (442)
T ss_pred C-CcceeeecCHHHHHHHHhcc
Confidence 9 89999999999999997654
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-59 Score=528.34 Aligned_cols=298 Identities=23% Similarity=0.322 Sum_probs=245.1
Q ss_pred ccchhhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhh
Q 005009 352 DMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAAR 431 (719)
Q Consensus 352 ~L~e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~ 431 (719)
++.+++.+++|+|+++.. ...|.++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~---~~~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~ 78 (451)
T PRK07678 9 ELLAKDEQYVWHGMKPYN---PNATMVVAKAEGA--WVTDIQGN----RYLDGMSGLWCVNVGYG-RKELAEAAYEQLKT 78 (451)
T ss_pred HHHHHhhcccCCCccccc---cCCCeeEEeeeee--EEEeCCCC----EEEEccccHHhhcCCCC-CHHHHHHHHHHHHh
Confidence 344455667888875322 1247888887765 89999999 99999999999999999 99999999999999
Q ss_pred cccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEE
Q 005009 432 FGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLA 511 (719)
Q Consensus 432 ~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~ 511 (719)
+.+... .+.+++..+|+++|++.+|. .++|+|+||||||||+|||+| |.|++++|. ++|.+||+
T Consensus 79 ~~~~~~-~~~~~~~~~lae~l~~~~~~--~~~v~f~~sGseA~e~AlklA-r~~t~~~g~------------~~r~~ii~ 142 (451)
T PRK07678 79 LSYFPL-TQSHEPAIKLAEKLNEWLGG--EYVIFFSNSGSEANETAFKIA-RQYHAQKGE------------PHRYKFIS 142 (451)
T ss_pred cCcccc-ccCCHHHHHHHHHHHHhCCC--CCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEE
Confidence 877652 46789999999999999875 369999999999999999999 888866553 56889999
Q ss_pred EeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhccc
Q 005009 512 LKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEER 591 (719)
Q Consensus 512 ~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~ 591 (719)
|+++|||+|.+++++++...++.. +.+ ..+++.+++.|+.++++ +..
T Consensus 143 ~~~~yHG~t~~als~~~~~~~~~~------------~~~----~~~~~~~~~~~~~~~~~--------~~~--------- 189 (451)
T PRK07678 143 RYRAYHGNSMGALAATGQAQRKYK------------YEP----LAPGFLHVPPPDCYRMP--------GIE--------- 189 (451)
T ss_pred ECCCcCCccHHHhhcCCCcccccc------------cCC----CCCCCEEeCCCcccccc--------ccC---------
Confidence 999999999999999986544331 111 11345667777666432 110
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc
Q 005009 592 DSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV 671 (719)
Q Consensus 592 d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~ 671 (719)
..+.+...+++.+++.|+. .++++|||||+||| ||+||+++||++||++||++|++||++||+|||||||||||+
T Consensus 190 ~~~~~~~~~~~~l~~~~~~----~~~~~iAAvi~EPi-qg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~ 264 (451)
T PRK07678 190 SEDIYDLECVKEIDRVMTW----ELSETIAAVIMEPI-ITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGK 264 (451)
T ss_pred ChHHHHHHHHHHHHHHHHh----cCCCceEEEEEccc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCch
Confidence 0122334456778888863 34679999999998 999999999999999999999999999999999999999999
Q ss_pred cccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 672 ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 672 ~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
+|+++++||+|||+|+||+|||||+|+||+++++++++.|..
T Consensus 265 ~~~~~~~gv~PDivt~gK~lggG~~Pi~av~~~~~i~~~~~~ 306 (451)
T PRK07678 265 AFGFMNYGVKPDIITMAKGITSAYLPLSATAVKKEIYEAFKG 306 (451)
T ss_pred hHHHHhcCCCCCEEEeecccccCCcceeEEEEcHHHHHHHhc
Confidence 999999999999999999999998999999999999998864
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-59 Score=527.74 Aligned_cols=300 Identities=28% Similarity=0.447 Sum_probs=247.6
Q ss_pred chhhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcc
Q 005009 354 PKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG 433 (719)
Q Consensus 354 ~e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~ 433 (719)
.+++..+.|+|+++...+....|.++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|++++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~ql~~l~ 80 (466)
T PRK07030 8 MQRDLKVLWHPCTQMKDHEQLPLIPIRRGEGV--WLEDFEGK----RYLDAVSSWWVNVFGHA-NPRINQRIKDQVDQLE 80 (466)
T ss_pred HhhhhcccccccccccccccCCCceEEeeecc--EEEECCCC----EEEEcchhHHhhcCCCC-CHHHHHHHHHHHHhcC
Confidence 34456678999876543322235678887775 89999999 99999999999999999 9999999999999988
Q ss_pred cccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEe
Q 005009 434 HVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALK 513 (719)
Q Consensus 434 ~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~ 513 (719)
+.+...+.+++..+|+++|++.+|.+ +++|+|+||||||||+|||+| |.|+..+|. ++|.+||+|+
T Consensus 81 ~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~sGsEAve~AlKlA-r~~~~~~g~------------t~r~~ii~~~ 146 (466)
T PRK07030 81 HVILAGFSHEPVIELSERLVKITPPG-LSRCFYADNGSSAIEVALKMS-FHYWRNRGK------------PRKKRFVTLT 146 (466)
T ss_pred CccccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCCcHHHHHHHHHHH-HHHHHHhCC------------CCCcEEEEEC
Confidence 77655678999999999999988754 689999999999999999999 777644443 5678999999
Q ss_pred CCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCc
Q 005009 514 GSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDS 593 (719)
Q Consensus 514 ~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~ 593 (719)
++|||+|.+++++++...++.. +++. .++..++|.|+++++.. + ...
T Consensus 147 ~~yHG~t~ga~s~~~~~~~~~~--------~~p~--------~~~~~~~p~~~~~~~~~--------~---------~~~ 193 (466)
T PRK07030 147 NSYHGETLAAMSVGDVALFTET--------YKPL--------LLDTIKVPSPDCYLRPE--------G---------MSW 193 (466)
T ss_pred CCcCcccHHHHhccCCcccccc--------CCcc--------CCCCEEcCCCCcccccc--------C---------CCH
Confidence 9999999999999986544432 1111 12345677777664321 1 111
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc
Q 005009 594 SDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET 673 (719)
Q Consensus 594 ~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~ 673 (719)
++....+++.+++.+++ .+++|||||+||++||+||++++|++||++||++|++||++||+|||||||||||+||
T Consensus 194 ~~~~~~~l~~le~~~~~-----~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~~~ 268 (466)
T PRK07030 194 EEHSRRMFAHMEQTLAE-----HHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMF 268 (466)
T ss_pred HHHHHHHHHHHHHHHHh-----CCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccccch
Confidence 23445567788888873 4689999999993399999999999999999999999999999999999999999999
Q ss_pred cccccCCCcceeeehhccCCCccchheeEeCHHHHhhhc
Q 005009 674 TADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 674 a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
+++++||+|||+|+||+|||||+|+||+++++++++.|.
T Consensus 269 a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~ei~~~~~ 307 (466)
T PRK07030 269 ACEQAGIRPDFLCLSKALTGGYLPLAAVLTTDTVYQAFY 307 (466)
T ss_pred HHHhcCCCCCEEeeehhccCCcccceEEEecHHHHHHHh
Confidence 999999999999999999999889999999999999885
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-59 Score=530.71 Aligned_cols=299 Identities=21% Similarity=0.260 Sum_probs=245.9
Q ss_pred CCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccC
Q 005009 358 GELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF 437 (719)
Q Consensus 358 ~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~ 437 (719)
+..+||||+++.......|.++++++|. |+||.||| +||||++|+|+++|||+ ||+|++|+++|++++.+...
T Consensus 54 ~~~~~~p~~~~~~~~~~~p~~i~~~~G~--~l~D~dG~----~ylD~~sg~~~~~lGh~-hp~v~~Av~~ql~~~~~~~~ 126 (504)
T PLN02760 54 GHDMLAPFTAGWQSTDLEPLVIEKSEGS--YVYDINGK----KYLDALAGLWCTALGGS-EPRLVAAATEQLNKLPFYHS 126 (504)
T ss_pred cCCcccCcccccccccCCCceEEeeeee--EEEECCCC----EEEEcCcCHHhcccCCC-CHHHHHHHHHHHhhccceec
Confidence 3448999999876544468888887775 89999999 99999999999999999 99999999999999876532
Q ss_pred -CCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCc
Q 005009 438 -PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSY 516 (719)
Q Consensus 438 -~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~sy 516 (719)
..+.+++..+||++|++.++...+++|+|+||||||||+|||+| |+|+...|. ++|.+||+|+++|
T Consensus 127 ~~~~~~~~~~~lae~L~~~~~~~~~~~v~f~~SGsEA~e~AlKlA-r~~~~~~g~------------~~r~~iI~~~~~y 193 (504)
T PLN02760 127 FWNRTTKPSLDLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLV-WYYNNALGR------------PNKKKFIARSKSY 193 (504)
T ss_pred ccccCcHHHHHHHHHHHhhcCCCCCCEEEEeCChHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEECCCc
Confidence 24578999999999999854333689999999999999999999 788755443 5678999999999
Q ss_pred ccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhH
Q 005009 517 HGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDL 596 (719)
Q Consensus 517 HG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~ 596 (719)
||+|++++++++.+.++.. ++++. ++..+++.|+.|++.. ++. +.+++
T Consensus 194 HG~t~~a~slsg~~~~~~~------------~~~~~----~~~~~~~~p~~~~~~~------~~~----------~~~~~ 241 (504)
T PLN02760 194 HGSTLISASLSGLPALHQK------------FDLPA----PFVLHTDCPHYWRFHL------PGE----------TEEEF 241 (504)
T ss_pred cCChHhhhhccCChhhccC------------CCCCC----CCcEEeCCCcccccCC------CCC----------cHHHH
Confidence 9999999999986544321 11111 2345677776664310 011 11233
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccccc
Q 005009 597 ASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD 676 (719)
Q Consensus 597 ~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e 676 (719)
...+.+.+++.+.. .+++++||||+||| ||+||+++||++||++|+++|++||++||+|||||||||||++|+++
T Consensus 242 ~~~~~~~le~~l~~----~~~~~iAAvI~EPv-~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~e 316 (504)
T PLN02760 242 STRLADNLENLILK----EGPETIAAFIAEPV-MGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFGCD 316 (504)
T ss_pred HHHHHHHHHHHHHh----cCCCceEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhhHHH
Confidence 44456778877753 34678999999998 99999999999999999999999999999999999999999999999
Q ss_pred ccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 677 LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 677 ~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
++||+|||+||||+|||||+|+||+++++++++.|..
T Consensus 317 ~~gv~PDivtlgK~lggG~~PigAv~~~~~i~d~~~~ 353 (504)
T PLN02760 317 KYNIKPDLVSLAKALSSAYMPIGAVLVSPEISDVIHS 353 (504)
T ss_pred hcCCCCcEEEecccccCCccccceEeecHHHHhhhhc
Confidence 9999999999999999999999999999999998863
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-59 Score=527.10 Aligned_cols=301 Identities=21% Similarity=0.269 Sum_probs=248.2
Q ss_pred cchhhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhc
Q 005009 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (719)
Q Consensus 353 L~e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~ 432 (719)
+.+++.+++|+||+++..+....|.++++++|. |+||.||| +|||+++|+|++++||+ ||+|++|+++|++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~q~~~~ 83 (466)
T PRK07036 11 LAQADKRHLLHPWHDFSSLGKEGSLVIVEAEGI--YVTDADGR----RYLDGIGGMWCVNVGYG-REEMADAIADQARRL 83 (466)
T ss_pred HHHHhhcccccCccCccccccCCCceEEeCcee--EEEECCCC----EEEECcccHHhhcCCCC-CHHHHHHHHHHHHhC
Confidence 344566789999987755444468888887775 89999999 99999999999999999 999999999999998
Q ss_pred ccccCCC-CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEE
Q 005009 433 GHVMFPE-NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLA 511 (719)
Q Consensus 433 ~~~~~~~-~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~ 511 (719)
.+.+... +.+++..+|||+|++.+|.+ +++|+|+||||||||+|||+| |+|++.+|. ++|.+||+
T Consensus 84 ~~~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~sGseAve~AlklA-r~~~~~~g~------------t~r~~Ii~ 149 (466)
T PRK07036 84 PYYTPFGDMTNAPAAELAAKLAELAPGD-LNHVFLTTGGSTAVDSALRFV-HYYFNVRGR------------PAKKHIIT 149 (466)
T ss_pred cccccccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCCchHHHHHHHHHH-HHHHHhcCC------------CCccEEEE
Confidence 7765333 67999999999999998754 689999999999999999999 788765543 56789999
Q ss_pred EeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhccc
Q 005009 512 LKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEER 591 (719)
Q Consensus 512 ~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~ 591 (719)
|+++|||+|.+++++++...++.. +. +. .++..+++.|++|+++. +.
T Consensus 150 ~~~~YHG~t~~a~s~~~~~~~~~~-----~~-------~~----~~~~~~~~~p~~~~~~~--------~~--------- 196 (466)
T PRK07036 150 RGDAYHGSTYLTASLTGKAADRTE-----FD-------YA----SDLVHHLSSPNPYRRPA--------GM--------- 196 (466)
T ss_pred EcCccCCccHhhhcccCCCccccc-----cc-------CC----CCCcEEecCCccccccc--------CC---------
Confidence 999999999999999986544431 11 11 12345667776664321 10
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc
Q 005009 592 DSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV 671 (719)
Q Consensus 592 d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~ 671 (719)
..+.....+.+.+++.+.. .++++|||||+||| ||+||+++||++||++|+++|++||++||+|||||||||||+
T Consensus 197 ~~~~~~~~~~~~~~~~i~~----~~~~~iAavi~EPv-~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~ 271 (466)
T PRK07036 197 SEAAFCDFLVDEFEDKILS----LGADNIAAFIAEPI-LGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGH 271 (466)
T ss_pred ChHHHHHHHHHHHHHHHHH----cCCCceEEEEEeCC-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCch
Confidence 0122334455667777753 35689999999998 999999999999999999999999999999999999999999
Q ss_pred ccccc-ccCCCcceeeehhccCCCccchheeEeCHHHHhhhc
Q 005009 672 ETTAD-LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 672 ~~a~e-~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
+|+++ ++|++|||+|+||+|||||+|+||+++++++++.|.
T Consensus 272 ~~~~~~~~gv~PDivt~gK~l~gG~~Pi~av~~~~~i~~~~~ 313 (466)
T PRK07036 272 FFASEAVFGIQPDIITFAKGLTSGYQPLGAVIISERLLDVIS 313 (466)
T ss_pred hhhhhhhcCCCCCEEEEccccccCccccEEEEEcHHHHHHHh
Confidence 99998 799999999999999999999999999999999885
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-59 Score=525.36 Aligned_cols=300 Identities=21% Similarity=0.296 Sum_probs=245.2
Q ss_pred chhhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcc
Q 005009 354 PKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG 433 (719)
Q Consensus 354 ~e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~ 433 (719)
.+.+..+.|+|+++++.+....|.++++++| +|+||.||| +||||++|+|++++||+ ||+|++|+++|++++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~G--~~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~q~~~~~ 83 (456)
T PRK07480 11 QALDAAHHLHPFSDMKALNEKGSRVITRAEG--VYLWDSEGN----KILDGMAGLWCVNVGYG-RKELADAAARQMRELP 83 (456)
T ss_pred HhhhhcccccCcccccccccCCCceEEecee--eEEEeCCCC----EEEEccchHHHhcCCCC-CHHHHHHHHHHHHhcC
Confidence 3345567899987765432235778888666 589999999 99999999999999999 9999999999999987
Q ss_pred cccC-CCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEE
Q 005009 434 HVMF-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (719)
Q Consensus 434 ~~~~-~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~ 512 (719)
+... ..+.+++..+||++|++.+|.+ +++|+|++|||||||+|||+| |.|++.+|. ++|.+||+|
T Consensus 84 ~~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGseA~e~AlklA-r~~~~~~g~------------~~r~~ii~~ 149 (456)
T PRK07480 84 YYNTFFKTTHPPAIELAAKLAEVAPPG-FNHVFFTNSGSEANDTVLRMV-RHYWALKGK------------PQKKVIISR 149 (456)
T ss_pred CcccccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEE
Confidence 6542 2467999999999999998754 689999999999999999999 788755543 567899999
Q ss_pred eCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccC
Q 005009 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (719)
Q Consensus 513 ~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d 592 (719)
+++|||+|.+++++++...++.. .++ + .++..+++.|++|++.. + .+
T Consensus 150 ~~~yHG~tl~a~s~~g~~~~~~~--------~~~----~----~~~~~~~~~p~~~~~~~--------~---------~~ 196 (456)
T PRK07480 150 KNGYHGSTVAGASLGGMKYMHEQ--------GDL----P----IPGIVHIDQPYWFGEGG--------D---------MT 196 (456)
T ss_pred CCCcCCcchhhhhccCChhhhcc--------cCC----C----CCCCeecCCCccccccc--------C---------CC
Confidence 99999999999999975433321 111 1 12345677777665421 0 01
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc
Q 005009 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (719)
Q Consensus 593 ~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~ 672 (719)
.+++...+.+.+++.+.+ .++++|||||+||| ||+||+++||++||++||++|++||++||+|||||||||||+|
T Consensus 197 ~~~~~~~~~~~l~~~~~~----~~~~~vAAvi~EPi-qg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~ 271 (456)
T PRK07480 197 PEEFGLAAARQLEAKILE----LGADNVAAFIGEPI-QGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGEW 271 (456)
T ss_pred hHHHHHHHHHHHHHHHHh----cCCCcEEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcch
Confidence 123334455777766653 35679999999998 9999999999999999999999999999999999999999999
Q ss_pred ccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhc
Q 005009 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 673 ~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
|+++++|++|||+|+||+|||||+|+||+++++++++.|.
T Consensus 272 ~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~~i~~~~~ 311 (456)
T PRK07480 272 FGSQHFGIKPDLMTIAKGLTSGYIPMGAVGVGDRVAEVLI 311 (456)
T ss_pred hhhhhcCCCCCeeeeehhhccCCccceEEEEcHHHHHHHh
Confidence 9999999999999999999999999999999999999884
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-59 Score=525.88 Aligned_cols=301 Identities=28% Similarity=0.426 Sum_probs=249.1
Q ss_pred cchhhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhc
Q 005009 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (719)
Q Consensus 353 L~e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~ 432 (719)
+.+++.+++|+|++++..+....|.++++++|. |+||.||| +|||+++|+|++++||+ ||+|++|+++|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~ql~~l 88 (460)
T PRK06916 16 LSEKNKAYVWHPFTQMKDYLEEDPLIIERGEGR--KLYDVNGN----EYYDGVSSIWLNVHGHQ-VPELDEAIREQLNKI 88 (460)
T ss_pred HHHHHhhccccccccccccccCCCeeEEecccc--EEEeCCCC----EEEEcchhHHHhhcCCC-CHHHHHHHHHHHHhC
Confidence 344456778999876543322457888887775 89999999 99999999999999999 999999999999998
Q ss_pred ccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEE
Q 005009 433 GHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (719)
Q Consensus 433 ~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~ 512 (719)
.+.....+.+++..+|+++|++.+|.+ +++++|+||||||||+|||+| |.|+..+|. ++|.+||+|
T Consensus 89 ~~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGseAve~AlklA-r~~~~~~g~------------tgr~~ii~~ 154 (460)
T PRK06916 89 AHSTLLGLANVPSILLAEKLIEVVPEG-LKKVFYSDSGATAVEIAIKMA-FQYWQNKGK------------PKKQRFVTL 154 (460)
T ss_pred CCccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEE
Confidence 876544578999999999999998754 689999999999999999999 777765543 568899999
Q ss_pred eCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccC
Q 005009 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (719)
Q Consensus 513 ~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d 592 (719)
+++|||+|.+++++++...++.. +.++ .++..++|+|+.|+++ ++ .+
T Consensus 155 ~~~YHG~t~~als~s~~~~~~~~--------~~~~--------~~~~~~~p~p~~~~~~--------~~---------~~ 201 (460)
T PRK06916 155 KNAYHGDTIGAVSVGAIDLFHQV--------YSSL--------LFEAIKMPYPYTYRSP--------YG---------ND 201 (460)
T ss_pred CCcCCcccHHhHhccCCcccccc--------cCCC--------CCCCEEeCCCcccccc--------cC---------CC
Confidence 99999999999999986554432 1111 1234567777666431 11 01
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc
Q 005009 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (719)
Q Consensus 593 ~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~ 672 (719)
.+.+...+.+.+++.|+ .++++|||||+||++||+||+++||++||++|+++|++||++||+|||||||||||++
T Consensus 202 ~~~~~~~~~~~l~~~l~-----~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~~ 276 (460)
T PRK06916 202 KAEIVKKHLEELEELLK-----EKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKM 276 (460)
T ss_pred hHHHHHHHHHHHHHHHH-----hCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCchh
Confidence 12344456678888887 3468999999999339999999999999999999999999999999999999999999
Q ss_pred ccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhc
Q 005009 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 673 ~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
|+++++||+|||+|+||+|||||+|+||+++++++++.|.
T Consensus 277 ~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~ei~~~~~ 316 (460)
T PRK06916 277 FACEHENVTPDIMTAGKGLTGGYLPIAITVTTDEIYNAFY 316 (460)
T ss_pred hHHHhcCCCCCeeeeehhhhcCccccceeeecHHHHHHhh
Confidence 9999999999999999999999889999999999999875
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-58 Score=520.96 Aligned_cols=303 Identities=21% Similarity=0.295 Sum_probs=248.4
Q ss_pred cchhhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhc
Q 005009 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (719)
Q Consensus 353 L~e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~ 432 (719)
+.+++.++.|+|+.+...+....|.++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~i~~Ai~~q~~~~ 80 (460)
T PRK06105 8 LEARDIAYHLHPYTNARRHEEEGPLVIERGEGI--YVYDDAGK----RYIEGMAGLWSVALGFS-EQRLVEAAARQMKKL 80 (460)
T ss_pred HHHhhhhhcccCCcccccccccCCceEEeeeEE--EEEECCCC----EEEEcchhHHhccCCCC-CHHHHHHHHHHHHhC
Confidence 445566778999876644322457888887665 89999999 99999999999999999 999999999999998
Q ss_pred cccc-CCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEE
Q 005009 433 GHVM-FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLA 511 (719)
Q Consensus 433 ~~~~-~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~ 511 (719)
.+.+ +..+.+++..+|+++|++.+|.+ +++|+|+||||||||+|||+| |+|+..+|. ++|.+||+
T Consensus 81 ~~~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGseAve~AlKla-r~~~~~~g~------------t~r~~il~ 146 (460)
T PRK06105 81 PFYHTFSHKSHGPVIDLAEKLVAMAPVP-MSKVFFTNSGSEANDTVVKLV-WYYNNALGR------------PEKKKIIS 146 (460)
T ss_pred CCeecccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEE
Confidence 7653 22367999999999999998754 689999999999999999999 777655443 56889999
Q ss_pred EeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhccc
Q 005009 512 LKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEER 591 (719)
Q Consensus 512 ~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~ 591 (719)
|+++|||+|.+++++++...++.. +++ + .++..+++.|+.+++. +. ..
T Consensus 147 ~~~~yHG~t~~a~s~t~~~~~~~~--------~~~----~----~~~~~~~~~p~~~~~~----------~~------~~ 194 (460)
T PRK06105 147 RQRGYHGVTIASASLTGLPNNHRS--------FDL----P----LDRILHTGCPHYYRFG----------LP------GE 194 (460)
T ss_pred ecCccCCcchhheeccCCcccccc--------cCC----C----CCCCEEcCCCcccccc----------cC------CC
Confidence 999999999999999975443321 111 1 1244567777665431 11 01
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc
Q 005009 592 DSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV 671 (719)
Q Consensus 592 d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~ 671 (719)
..+.+...+.+.+++++.. .++++|||||+||| ||+||++++|++||++||++|++||++||+|||||||||||+
T Consensus 195 ~~~~~~~~~~~~le~~~~~----~~~~~iAavIvEPi-qg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~ 269 (460)
T PRK06105 195 SEEAFATRLANELEALILA----EGPDTIAAFIGEPV-MGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGN 269 (460)
T ss_pred ChHHHHHHHHHHHHHHHHH----cCCCceEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCch
Confidence 1123445567788888863 34578999999998 999999999999999999999999999999999999999999
Q ss_pred cccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 672 ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 672 ~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
||+++++|++|||+|+||+||||++|+|++++++++++.|..
T Consensus 270 ~f~~~~~~v~PDi~~~gK~lggG~~P~~av~~~~~i~~~~~~ 311 (460)
T PRK06105 270 MFGCETFGIKPDILVMSKQLSSSYQPLSAVLMNEKVYDPIAD 311 (460)
T ss_pred hhhHHhcCCCCCeeeeecccccCcccceEEEEcHHHHHHHhc
Confidence 999999999999999999999998999999999999998864
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-58 Score=519.38 Aligned_cols=299 Identities=18% Similarity=0.257 Sum_probs=244.2
Q ss_pred hhhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhccc
Q 005009 355 KRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGH 434 (719)
Q Consensus 355 e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~ 434 (719)
+++..+.|+|+++++.+....|.++++++|. |+||.||| +||||++|+|+++|||+ ||+|++|+++|++++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-hp~v~~A~~~q~~~~~~ 88 (460)
T PRK12403 16 AADAAHHIHAFLDQKALNAEGPRVMVRGEGL--HLWDNDGK----RYLDGMSGLWCTNLGYG-RKDLAAAAARQMEQLPY 88 (460)
T ss_pred HhhhcccccccccccccccCCCceEEeceee--EEEeCCCC----EEEECchhHHhhcCCCC-CHHHHHHHHHHHHhCCC
Confidence 3445668999887654322457888887775 89999999 99999999999999999 99999999999999887
Q ss_pred ccCC-CCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEe
Q 005009 435 VMFP-ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALK 513 (719)
Q Consensus 435 ~~~~-~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~ 513 (719)
.+.. ...+++..+|+++|++.+|.+ +++++|+||||||||+|||+| |.|+...|. ++|.+||++.
T Consensus 89 ~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGseA~e~AiklA-r~~~~~~g~------------~~r~~ii~~~ 154 (460)
T PRK12403 89 YNMFFHTTHPAVIELSELLFSLLPGH-YSHAIYTNSGSEANEVLIRTV-RRYWQVLGK------------PQKKIMIGRW 154 (460)
T ss_pred eecccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCCcHHHHHHHHHHH-HHHHHhhCC------------CCCcEEEEEC
Confidence 6432 356899999999999998754 589999999999999999999 778644332 4577899999
Q ss_pred CCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCc
Q 005009 514 GSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDS 593 (719)
Q Consensus 514 ~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~ 593 (719)
++|||+|.+++++++...++.. ++ ..++..+++.|++|+++ ++. ..
T Consensus 155 ~~yHG~t~~~~s~s~~~~~~~~---------~~--------~~~~~~~~~~p~~~~~~---------~~~--------~~ 200 (460)
T PRK12403 155 NGYHGSTLAATALGGMKFMHEM---------GG--------LIPDVAHIDEPYWYANG---------GEL--------TP 200 (460)
T ss_pred CCcCcccHhhhhcCCCcccccc---------CC--------CCCCCEEeCCCcccccc---------cCC--------Ch
Confidence 9999999999999986543321 11 11245677778776532 110 01
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc
Q 005009 594 SDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET 673 (719)
Q Consensus 594 ~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~ 673 (719)
..+.+.+.+.+++.+.+ .+++++||||+||| ||+||+++||++||++|+++|++||++||+|||||||||||++|
T Consensus 201 ~~~~~~~~~~le~~~~~----~~~~~iaavI~Epv-~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~ 275 (460)
T PRK12403 201 AEFGRRAALQLEEKILE----LGAENVAGFVAEPF-QGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWF 275 (460)
T ss_pred HHHHHHHHHHHHHHHHH----hCCCceEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhh
Confidence 23334455667766653 34578999999998 99999999999999999999999999999999999999999999
Q ss_pred cccccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 674 TADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 674 a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
+++++|++|||+|+||+|||||+|+||+++++++++.|..
T Consensus 276 a~e~~gv~PDiv~~gK~lggG~~Piga~v~~~~i~~~~~~ 315 (460)
T PRK12403 276 AHEHFGFEPDTLSIAKGLTSGYVPMGGLVLSKRIAEALVE 315 (460)
T ss_pred hhhhcCCCCCeEEEcccccccccceEEEEECHHHHHHHhc
Confidence 9999999999999999999998899999999999998853
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-58 Score=515.69 Aligned_cols=304 Identities=24% Similarity=0.331 Sum_probs=252.5
Q ss_pred ccchhhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhh
Q 005009 352 DMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAAR 431 (719)
Q Consensus 352 ~L~e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~ 431 (719)
.+.+.+.+++||||++...+....|.++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Av~~q~~~ 83 (460)
T PRK06541 11 DLQALAKRHLWMHFTRHGAYIDAPVPVIVRGEGC--YIWDDRGK----RYLDGLAGLFVVQVGHG-RAELAEAAAKQAGT 83 (460)
T ss_pred HHHHHhhcccccCccCccccccCCCceEEeCccc--EEEeCCCC----EEEECCccHHhccCCCC-CHHHHHHHHHHHhh
Confidence 3445667889999998765432357788887775 89999999 99999999999999999 99999999999999
Q ss_pred cccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEE
Q 005009 432 FGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLA 511 (719)
Q Consensus 432 ~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~ 511 (719)
+.+.+...+.+++..+||++|++.+|.+ +++|+|+||||||||+|||+| |.|++..|. ++|.+||+
T Consensus 84 ~~~~~~~~~~~~~~~~la~~l~~~~p~~-~~~v~f~~sGseAve~AlklA-r~~~~~~g~------------~~r~~ii~ 149 (460)
T PRK06541 84 LAFFPLWSYAHPPAIELAERLAALAPGD-LNRVFFTTGGSEAVESAWKLA-KQYFKLTGK------------PGKHKVIS 149 (460)
T ss_pred CcCccccccCCHHHHHHHHHHHHhCCCC-cCEEEEcCCcHHHHHHHHHHH-HHHHHhcCC------------CCccEEEE
Confidence 8876544678999999999999988754 689999999999999999999 777654332 46789999
Q ss_pred EeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhccc
Q 005009 512 LKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEER 591 (719)
Q Consensus 512 ~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~ 591 (719)
|+++|||+|.+++++++...++.. +.+. .++..++|.|+.++++. |++
T Consensus 150 ~~~~yHG~t~~a~s~~~~~~~~~~--------~~~~--------~~g~~~~~~~~~~~~~~-------~~~--------- 197 (460)
T PRK06541 150 RAIAYHGTTQGALAITGLPAFKAP--------FEPL--------VPGGFRVPNTNFYRAPE-------LGD--------- 197 (460)
T ss_pred EcCcccCcchhhhcCcCChhhccc--------cCCC--------CCCcEEeCCCccccccc-------cCC---------
Confidence 999999999999999986544331 1111 13456677776664320 211
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc
Q 005009 592 DSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV 671 (719)
Q Consensus 592 d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~ 671 (719)
+.+++...+++.+++.+++ .+++++||||+||| ||++|++++|++||++|+++|++||++||+|||||||||||+
T Consensus 198 ~~~~~~~~~~~~l~~~l~~----~~~~~~Aavi~EPv-~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~ 272 (460)
T PRK06541 198 DPEAFGRWAADRIEEAIEF----EGPDTVAAVFLEPV-QNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGE 272 (460)
T ss_pred CHHHHHHHHHHHHHHHHHh----cCCCCEEEEEECCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCch
Confidence 1224455667888888874 24678999999998 999999999999999999999999999999999999999999
Q ss_pred cccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 672 ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 672 ~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
+|+++++|++|||+|+||+|||||+|+|++++++++++.+..
T Consensus 273 ~~a~~~~gv~PDivt~gK~l~~G~~pigav~~~~~i~~~~~~ 314 (460)
T PRK06541 273 MFGCERFGYVPDIITCAKGITSGYSPLGAMIASDRLFEPFLD 314 (460)
T ss_pred hhhhhhcCCCCCEEEecccccCCccceeEEEEcHHHHHHhhc
Confidence 999999999999999999999998899999999999998753
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-58 Score=515.93 Aligned_cols=292 Identities=20% Similarity=0.244 Sum_probs=240.9
Q ss_pred cchhhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhc
Q 005009 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (719)
Q Consensus 353 L~e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~ 432 (719)
..+.+..++|++++.+.. ..|.++++++|. ||||.||| +||||++|+|++++||+ ||+|++|+++|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~---~~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~q~~~~ 85 (451)
T PRK06062 16 AYALDRAHVFHSWSAQGK---INPMVIAGAEGS--YVWDYEGR----RYLDFSSQLVNTNIGHQ-HPKVVAAIQEQAARL 85 (451)
T ss_pred HHHhhhhhcccccccccc---CCCceEEeceee--EEEECCCC----EEEEcccCHHhhcCCCC-CHHHHHHHHHHHHhc
Confidence 334455668888875421 357788886665 89999999 99999999999999999 999999999999998
Q ss_pred ccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEE
Q 005009 433 GHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (719)
Q Consensus 433 ~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~ 512 (719)
.+... .+.+++..+|+|+|++++|.+ +++|+|+||||||||+|||+| |.|++| .+||+|
T Consensus 86 ~~~~~-~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGsEAve~AlklA-r~~tgr------------------~~ii~~ 144 (451)
T PRK06062 86 CTVAP-AHANDARSEAARLIAERAPGD-LSKVFFTNGGADANEHAVRMA-RLHTGR------------------PKVLSA 144 (451)
T ss_pred CCcCC-ccCCHHHHHHHHHHHHhCCCC-CCEEEEcCChHHHHHHHHHHH-HHhhCC------------------ceEEEE
Confidence 87654 578999999999999998754 689999999999999999999 788654 589999
Q ss_pred eCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccC
Q 005009 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (719)
Q Consensus 513 ~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d 592 (719)
+++|||+|.+++++++...++.. . | ..++..+++.|+.++++ |... .
T Consensus 145 ~~~yHG~t~~als~~~~~~~~~~---------~-----~---~~~~~~~~~~p~~~~~~--------~~~~--------~ 191 (451)
T PRK06062 145 YRSYHGGTGSAINLTGDPRRWPN---------D-----T---GRAGVVHFFGPFLYRSE--------FHAT--------T 191 (451)
T ss_pred eCCCCCCCHHHHhhcCCcccccC---------C-----C---CCCCCEEeCCCCccccc--------cCCC--------C
Confidence 99999999999999975432210 0 0 01244556666655431 2110 0
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc
Q 005009 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (719)
Q Consensus 593 ~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~ 672 (719)
++++...+.+.+++.|+. .++++|||||+||| ||++|+++||++||++|+++|++||++||+|||||||||||+|
T Consensus 192 ~~~~~~~~~~~le~~l~~----~~~~~iAaviiEPv-~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~ 266 (451)
T PRK06062 192 EEEECERALAHLERVIEL----EGPSTIAAILLESV-PGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKW 266 (451)
T ss_pred hHHHHHHHHHHHHHHHHh----cCCCceEEEEEccc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHH
Confidence 123444567888888863 34578999999998 9999999999999999999999999999999999999999999
Q ss_pred ccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 673 ~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
|+++++||+|||+|+||+|||||+|+||+++++++++.|..
T Consensus 267 ~a~~~~gv~PDi~t~gK~lggG~~Pigav~~~~~i~~~~~~ 307 (451)
T PRK06062 267 FAIEHFGVVPDLITFAKGVNSGYVPLGGVAISEAIAATFAD 307 (451)
T ss_pred HHHHhcCCCCCeeeechhhhcCCcCcEEEEEcHHHHHHhcc
Confidence 99999999999999999999999999999999999998853
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-57 Score=511.38 Aligned_cols=281 Identities=21% Similarity=0.249 Sum_probs=231.7
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. ||||.||| +||||++|+|++++||+ ||+|++|+++|++++.+.....+.+++..+|+++|++
T Consensus 12 ~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~av~~ql~~~~~~~~~~~~~~~~~~lae~L~~ 84 (443)
T PRK07483 12 TLPVAVAGEGI--YLIDATGK----RYLDASGGAAVSCLGHS-HPRVIAAIHAQIDRLAYAHTSFFTTEPAEALADRLVA 84 (443)
T ss_pred CCceEEeceEE--EEEeCCCC----EEEEcCccHhhhccCCC-CHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHH
Confidence 47788886665 89999999 99999999999999999 9999999999999987654334679999999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
.+|.+ +++|+|+||||||||+|||+| |.|+.++|. ++|.+||+|+++|||+|.+++++++...++.
T Consensus 85 ~~p~~-~~~v~f~~sGsEAve~AlklA-r~~~~~~g~------------~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~ 150 (443)
T PRK07483 85 AAPAG-LEHVYFVSGGSEAVEAALKLA-RQYFVEIGQ------------PQRRHFIARRQSYHGNTLGALAIGGNAWRRE 150 (443)
T ss_pred hCCCC-CCEEEEcCCcHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEECCCcCCcCHHHhhhcCCccccc
Confidence 88754 689999999999999999999 777655443 5688999999999999999999998654332
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
. +++.. ++..+++.|+.|++. .. .....++...+++.+++.+..
T Consensus 151 ~--------~~p~~--------~~~~~~~~~~~~~~~--------~~--------~~~~~~~~~~~~~~l~~~~~~---- 194 (443)
T PRK07483 151 P--------FAPLL--------IEAHHVSPCYAYREQ--------RA--------GESDEAYGQRLADELEAKILE---- 194 (443)
T ss_pred c--------cCCCC--------CCCEEeCCCcccccc--------cc--------CCCHHHHHHHHHHHHHHHHHh----
Confidence 1 11111 123455555444321 00 011123445567788877753
Q ss_pred CCCCcEEEEEEcccccc-CCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCC
Q 005009 615 KVSGCIGALIIEPVVHA-AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg-~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lgg 693 (719)
.++++|||||+||| || +||+++||++||++|+++|++||++||+|||||||||||+||+++++|++|||+|+||+|||
T Consensus 195 ~~~~~iAAvivEPi-qg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~g 273 (443)
T PRK07483 195 LGPDTVAAFVAETV-VGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGTLFACEEDGVAPDLVTIAKGLGA 273 (443)
T ss_pred cCCCceEEEEEeCc-ccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcHHHHHhhcCCCCCeeeehhhhcc
Confidence 35679999999998 99 58999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchheeEeCHHHHhhhcC
Q 005009 694 GVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~~ 713 (719)
||+|+|++++++++++.|..
T Consensus 274 G~~Pi~av~~~~~i~~~~~~ 293 (443)
T PRK07483 274 GYQPIGAVLASDRIYDAIAD 293 (443)
T ss_pred CccccEEEEEcHHHHHHHhc
Confidence 98899999999999998854
|
|
| >KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-57 Score=482.68 Aligned_cols=265 Identities=33% Similarity=0.481 Sum_probs=228.7
Q ss_pred CCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHH
Q 005009 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (719)
Q Consensus 374 ~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~ 453 (719)
.+|.++++++| +.++|.||+ +||||+|+||+..+||+ ||+|.+|+.+|+.+++|+++..++.+ +.+++++|.
T Consensus 37 ~~pv~~~~gkg--~kl~D~~g~----EyiD~~ssw~~~~~Gha-npev~ral~~q~~k~~hs~~~~~t~e-av~l~~~l~ 108 (433)
T KOG1401|consen 37 RYPVVIESGKG--SKLFDPDGK----EYIDFTSSWAVTILGHA-NPEVARALAEQAKKLGHSSNGYFTLE-AVELEEVLS 108 (433)
T ss_pred CCceeeeccee--eeeecCCcc----eeeeeccceeccccCCC-CHHHHHHHHHHHhhheeccCccccHH-HHHHHHHHH
Confidence 46777777666 489999999 99999999999999999 99999999999999999986555555 999999999
Q ss_pred hccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCC
Q 005009 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (719)
Q Consensus 454 ~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~ 533 (719)
+..++++.+||||||||+||||+|||+| |+++..+- +..+.+||+|+|||||+|+|+|++++.+.|+
T Consensus 109 ~~~~~~~~~rvff~nsGTeAne~ALK~A-rk~~~~~~------------~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~ 175 (433)
T KOG1401|consen 109 AVLGKGSAERVFFCNSGTEANETALKFA-RKFTGKKH------------PEKKTKFIAFENSYHGRTLGALSVTGNSKYG 175 (433)
T ss_pred hcccCCCccEEEEecCCcHHHHHHHHHH-HHhhcccC------------CccceeEEEEecCcCCcchhHHHhhcccccC
Confidence 9998888999999999999999999999 66655431 1334789999999999999999999877665
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
-+ ++|- .|+.. +.+|||. .++++.++
T Consensus 176 ~~------------~~p~------------~p~v~--------~~~ynd~------------------t~l~k~~~---- 201 (433)
T KOG1401|consen 176 LP------------FDPI------------APDVV--------TAEYNDS------------------TALEKLFE---- 201 (433)
T ss_pred CC------------CCCC------------CCcee--------ecccCCH------------------HHHHHHHH----
Confidence 43 2221 11111 1235652 56888887
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCC
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lgg 693 (719)
.+.++|||||+||| ||+||++++.++|++.||++|+++|++||+|||||||||+|..|++++++++|||+|+||.|||
T Consensus 202 -~h~~~IaAVIvEPi-qGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~~a~e~~~~~PDI~t~aK~L~g 279 (433)
T KOG1401|consen 202 -SHKGEIAAVIVEPI-QGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYGWAQEYFGVTPDITTVAKPLGG 279 (433)
T ss_pred -hCCCceEEEEEecc-cCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccchHHHHHHhCcCCcceeehhhccC
Confidence 46788999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchheeEeCHHHHhhhcCCCC
Q 005009 694 GVIPLAATLATNAVFDSFVGDSK 716 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~~~~~ 716 (719)
| +|+||++++++|++.|..++.
T Consensus 280 G-lPigA~~v~~kV~~~i~~~~~ 301 (433)
T KOG1401|consen 280 G-LPIGATGVRDKVAEMISPGDH 301 (433)
T ss_pred C-ceeEEEeehHHHHhhcCCCCc
Confidence 9 899999999999999977654
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-57 Score=504.89 Aligned_cols=291 Identities=30% Similarity=0.461 Sum_probs=238.6
Q ss_pred hhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccc
Q 005009 356 RAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHV 435 (719)
Q Consensus 356 ~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~ 435 (719)
++.+++|+||++... ..++.++++++| +|+||.||| +||||++|+|+.++||+ ||+|++|+++|++++.+.
T Consensus 9 ~~~~~~~~~~~~~~~--~~~~~~i~~a~G--~~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~ 79 (429)
T PRK06173 9 LDRQHIWHPYSSVTD--PIPVYPVERADG--VMITLKDGR----RLIDGMSSWWAALHGYN-HPRLNAAATNQLAKMSHI 79 (429)
T ss_pred hhhcccccccccccc--cCCCceEEecee--eEEEcCCCC----EEEEccchHHhccCCCC-CHHHHHHHHHHHHhcCCc
Confidence 455678999876532 122346777666 589999999 99999999999999999 999999999999998877
Q ss_pred cCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCC
Q 005009 436 MFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGS 515 (719)
Q Consensus 436 ~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~s 515 (719)
.+..+.+++..+|+++|++.+|.+ +++|+|++|||||||+|||+| |.|++.+|. ++|.+||+|+++
T Consensus 80 ~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~sGseAve~AlklA-r~~~~~~g~------------~~r~~ii~~~~~ 145 (429)
T PRK06173 80 MFGGFTHEPAVELAQKLLEILPPS-LNKIFFADSGSVAVEVAMKMA-LQYQQAKGE------------VQRTKFATIRSG 145 (429)
T ss_pred cccccCCHHHHHHHHHHHhhCCCC-cCEEEEeCCchHHHHHHHHHH-HHHHHHhCC------------CCCcEEEEECCC
Confidence 655578999999999999998754 789999999999999999999 788765543 568899999999
Q ss_pred cccCccccccccCCC-CCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCch
Q 005009 516 YHGDTLGAMEAQAPS-PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSS 594 (719)
Q Consensus 516 yHG~t~galslt~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~ 594 (719)
|||+|.+++++++.. .++.. +.+.. ++..++|.|+.+ +. .
T Consensus 146 yHG~t~~a~s~~~~~~~~~~~--------~~~~~--------~~~~~~~~p~~~-----------~~------------~ 186 (429)
T PRK06173 146 YHGDTWHAMSVCDPVTGMHGL--------FNHSL--------PVQYFLPQPSIK-----------FG------------E 186 (429)
T ss_pred cCCcchhhhccCCCchhhhhc--------ccccC--------CCCeEeCCCCcc-----------cc------------h
Confidence 999999999998742 23221 11110 123345555322 10 1
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccc
Q 005009 595 DLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT 674 (719)
Q Consensus 595 ~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a 674 (719)
.+...+++.+++.|++ .+++|||||+|||+||+||+++||++|+++|+++|++||++||+|||||||||||++|+
T Consensus 187 ~~~~~~l~~l~~~i~~-----~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a 261 (429)
T PRK06173 187 EWNDEAIEPLQDLLEQ-----KGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLFA 261 (429)
T ss_pred hHHHHHHHHHHHHHHh-----CCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCcchH
Confidence 2233456778888863 45789999999955999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 675 ADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 675 ~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
++++|++|||+|+||+|||||+|+|++++++++++.|..
T Consensus 262 ~~~~gv~PDiv~~gK~l~gG~~p~~a~~~~~~i~~~~~~ 300 (429)
T PRK06173 262 LEHAGVVPDIMCIGKALTGGYLTLSATITTEAIAQTICS 300 (429)
T ss_pred HHhcCCCCCEEEeehhhhCCccccceEEecHHHHHHHhc
Confidence 999999999999999999999999999999999998853
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-57 Score=505.29 Aligned_cols=296 Identities=23% Similarity=0.348 Sum_probs=242.6
Q ss_pred CCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccC
Q 005009 358 GELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF 437 (719)
Q Consensus 358 ~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~ 437 (719)
...+|+|++++..+. ..|.++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|++++.+.+.
T Consensus 15 ~~~~~~~~~~~~~~~-~~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~l~~~~~ 86 (445)
T PRK09221 15 LDAHWMPFTANRQFK-AAPRLLVSAEGM--YYTDADGR----KILDGTAGLWCCNAGHG-RPEIVEAVARQAATLDYAPA 86 (445)
T ss_pred hhhcccCcccccccC-CCCceEEecccc--EEEeCCCC----EEEEccccHhhccCCCC-CHHHHHHHHHHHHhccCccc
Confidence 355799987765432 347788887665 89999999 99999999999999999 99999999999999887765
Q ss_pred CCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcc
Q 005009 438 PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYH 517 (719)
Q Consensus 438 ~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syH 517 (719)
..+.+++..+|+++|++.+|.+ +++|+|+||||||||+|||+| |.|++++|. ++|.+||+|+++||
T Consensus 87 ~~~~~~~~~~la~~L~~~~p~~-~~~v~f~~sGseAve~AlklA-r~~~~~~g~------------~~r~~ii~~~~~yH 152 (445)
T PRK09221 87 FQMGHPLAFELAERLAELAPGG-LDHVFFTNSGSESVDTALKIA-LAYHRARGQ------------GTRTRLIGRERGYH 152 (445)
T ss_pred cccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEECCCcC
Confidence 4577999999999999998754 689999999999999999999 788755443 45789999999999
Q ss_pred cCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcc-hhhhcccccccccccCccchhhcccCchhH
Q 005009 518 GDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE-WLYSKIVEHKDITFCSRDEIFYEERDSSDL 596 (719)
Q Consensus 518 G~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~-~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~ 596 (719)
|+|.+++++++...++.. +++. .++..++++|+ .+++. +.. ..+.+
T Consensus 153 G~t~gals~~~~~~~~~~--------~~~~--------~~~~~~~~~~~~~~~~~--------~~~---------~~~~~ 199 (445)
T PRK09221 153 GVGFGGISVGGIVNNRKM--------FGGL--------LPGVDHLPHTLDLPENA--------FSK---------GQPEH 199 (445)
T ss_pred ccchhhhccCCChhhhhc--------cCCC--------CCCCeEeCCCccccccc--------cCC---------ChHHH
Confidence 999999999986544332 1111 11234455553 22211 111 11233
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccccc
Q 005009 597 ASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD 676 (719)
Q Consensus 597 ~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e 676 (719)
...+.+.+++.++. .+++++||||+||| ||++|++.||++||++|+++|++||++||+|||||||||||++|+++
T Consensus 200 ~~~~~~~l~~~i~~----~~~~~iAavi~Epv-~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~~~~ 274 (445)
T PRK09221 200 GAELADDLERLVAL----HDASTIAAVIVEPM-AGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAAFAAE 274 (445)
T ss_pred HHHHHHHHHHHHHh----cCCCcEEEEEEecc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCchhhHHH
Confidence 44556778888874 23578999999998 99999999999999999999999999999999999999999999999
Q ss_pred ccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 677 LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 677 ~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
++|++|||+|+||+|||||+|+|++++++++++.|..
T Consensus 275 ~~gv~PDi~~~gK~l~gG~~Pi~av~~~~~i~~~~~~ 311 (445)
T PRK09221 275 RFGVTPDIITFAKGLTNGAIPMGAVIASDEIYDAFMQ 311 (445)
T ss_pred hcCCCCCEEEeccccccCcccceeeEEcHHHHHhhcc
Confidence 9999999999999999999999999999999998864
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-56 Score=503.37 Aligned_cols=295 Identities=22% Similarity=0.346 Sum_probs=240.6
Q ss_pred CCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCC
Q 005009 359 ELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFP 438 (719)
Q Consensus 359 ~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~ 438 (719)
+..|+|+++...+. ..|.++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|++++.+....
T Consensus 13 ~~~~~~~~~~~~~~-~~p~~~~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~l~~~~~~ 84 (442)
T PRK13360 13 SAFWMPFTANRQFK-KAPRLLVAAKGM--YYTTHDGR----RVLDGTAGLWCVNAGHG-RPEIVEAVRAQAGELDYAPAF 84 (442)
T ss_pred cccccCcccccccc-CCCceEEeeeee--EEEeCCCC----EEEECchhHHHhccCCC-CHHHHHHHHHHHHhCCCcccC
Confidence 44788887654432 357788887665 89999999 99999999999999999 999999999999998776544
Q ss_pred CCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCccc
Q 005009 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (719)
Q Consensus 439 ~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG 518 (719)
.+.+++..+|+++|++.+|.+ +++|+|+||||||||+|||+| |.|++++|. ++|.+||+|+++|||
T Consensus 85 ~~~~~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~AlklA-r~~~~~~g~------------~~r~~ii~~~~~yHG 150 (442)
T PRK13360 85 QMGHPKAFELANRIAEIAPGG-LNHVFFTNSGSESVDTALKIA-LAYHRARGE------------GSRTRLIGRERGYHG 150 (442)
T ss_pred CcCCHHHHHHHHHHHHhCCCC-CCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEEcCCcCC
Confidence 567999999999999998754 689999999999999999999 777654432 457899999999999
Q ss_pred CccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcch-hhhcccccccccccCccchhhcccCchhHH
Q 005009 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEW-LYSKIVEHKDITFCSRDEIFYEERDSSDLA 597 (719)
Q Consensus 519 ~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~-~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~ 597 (719)
+|.+++++++...++.. +++.. ++..++|.|+. ++++ |.. +.+.+.
T Consensus 151 ~t~gals~tg~~~~~~~--------~~~~~--------~~~~~~p~~~~~~~~~--------~~~---------~~~~~~ 197 (442)
T PRK13360 151 VGFGGISVGGIVPNRKA--------FGALL--------PGVDHLPHTLDLARNA--------FSK---------GQPEHG 197 (442)
T ss_pred ccHhhhhccCChhhhhc--------cCCCC--------CCCEEeCCCchhhccc--------cCC---------ChHHHH
Confidence 99999999986544432 11111 12334555532 2111 111 112334
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccc
Q 005009 598 SIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677 (719)
Q Consensus 598 ~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~ 677 (719)
..+.+.+++.++. .+++++||||+||| ||++|+++||++||++|+++|++||++||+|||||||||||++|++++
T Consensus 198 ~~~~~~le~~l~~----~~~~~~aavivEpi-~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~ 272 (442)
T PRK13360 198 AELADELERLVTL----HDASTIAAVIVEPV-AGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFAAQY 272 (442)
T ss_pred HHHHHHHHHHHHh----cCCCcEEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhh
Confidence 4567788888864 34578999999998 999999999999999999999999999999999999999999999999
Q ss_pred cCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 678 LGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 678 ~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
+|++|||+|+||+|||||+|+||+++++++++.|..
T Consensus 273 ~gv~PDivt~gK~l~gG~~P~gav~~~~~i~~~~~~ 308 (442)
T PRK13360 273 FGVTPDLLTCAKGLTNGAIPMGAVFVSSEIHDAFMQ 308 (442)
T ss_pred cCCCCceeeeeeccccCccceEEEEEcHHHHHHhhc
Confidence 999999999999999999999999999999998864
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-56 Score=499.84 Aligned_cols=288 Identities=28% Similarity=0.434 Sum_probs=235.0
Q ss_pred hhhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhccc
Q 005009 355 KRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGH 434 (719)
Q Consensus 355 e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~ 434 (719)
+++.+++|+|+.+.. ..|.++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|++++.+
T Consensus 6 ~~~~~~~~~~~~~~~----~~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~i~~ai~~q~~~~~~ 74 (422)
T PRK05630 6 EFDHRHIWHPYAAPG----VRNRLVTSTDGV--FLTLEDGS----TVIDAMSSWWSAAHGHG-HPRLKAAAHKQIDTMSH 74 (422)
T ss_pred hccccccccCcccCC----CCCeeEEeceee--EEEECCCC----EEEEcchhHHHhcCCCC-CHHHHHHHHHHHHhCCC
Confidence 345567888876522 357788886665 89999999 99999999999999999 99999999999999887
Q ss_pred ccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeC
Q 005009 435 VMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKG 514 (719)
Q Consensus 435 ~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~ 514 (719)
..+..+.+++..+|+++|++.+|.+ +++|+|++|||||||+|||+| |.|+..+|. ++|.+||+|++
T Consensus 75 ~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGseA~e~AlklA-r~~~~~~g~------------~~r~~ii~~~~ 140 (422)
T PRK05630 75 VMFGGLTHEPAIKLTRKLLNLTDNG-LDHVFYSDSGSVSVEVAIKMA-LQYSKGQGH------------PERTRLLTWRS 140 (422)
T ss_pred cccCCcCCHHHHHHHHHHHhhCCCC-cCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEECC
Confidence 7654568999999999999988754 689999999999999999999 778754443 56889999999
Q ss_pred CcccCccccccccCCC-CCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCc
Q 005009 515 SYHGDTLGAMEAQAPS-PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDS 593 (719)
Q Consensus 515 syHG~t~galslt~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~ 593 (719)
+|||+|.+++++++.. .++.. | .+.+ ++..++|.|.... . +
T Consensus 141 ~yHG~t~~als~~~~~~~~~~~----~----~~~~--------~~~~~~p~~~~~~-----------~----------~- 182 (422)
T PRK05630 141 GYHGDTFAAMSVCDPEGGMHSL----W----KGTL--------PEQIFAPAPPVRG-----------S----------S- 182 (422)
T ss_pred CcCCccHHHhccCCCccccccc----c----cccC--------CCCeEcCCCcccC-----------C----------C-
Confidence 9999999999998742 22221 1 1110 1223444442110 0 0
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc
Q 005009 594 SDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET 673 (719)
Q Consensus 594 ~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~ 673 (719)
......|.+.+++.+. +++||||+||++||+||+++||++||++|+++|++||++||+|||||||||||++|
T Consensus 183 ~~~~~~~~~~~~~~~~--------~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~~~ 254 (422)
T PRK05630 183 PQEISEYLRSLELLID--------ETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELF 254 (422)
T ss_pred hHHHHHHHHHHHHHHh--------hceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCchhh
Confidence 0112345666776664 48999999995599999999999999999999999999999999999999999999
Q ss_pred cccccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 674 TADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 674 a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
+++++|++|||+|+||+|||||+|+|++++++++++.|..
T Consensus 255 a~~~~gv~PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~ 294 (422)
T PRK05630 255 ATLAAGVTPDIMCVGKALTGGFMSFAATLCTDKVAQLIST 294 (422)
T ss_pred HHHhcCCCCCeeeeechhhcCccccceeeccHHHHHHHhc
Confidence 9999999999999999999999999999999999998853
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-56 Score=496.38 Aligned_cols=289 Identities=28% Similarity=0.426 Sum_probs=235.8
Q ss_pred hCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhccccc
Q 005009 357 AGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM 436 (719)
Q Consensus 357 ~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~ 436 (719)
+.+++|+|++++.. ..+|.++++++|. |+||.||| +|||+++|+|++++||+ ||+|++|+++|++++.+..
T Consensus 9 ~~~~~~~~~~~~~~--~~~~~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~i~~Ai~~q~~~~~~~~ 79 (428)
T PRK07986 9 DQRHIWHPYTSMTS--PLPVYPVVSAEGC--ELILADGR----RLVDGMSSWWAAIHGYN-HPQLNAAMKSQIDAMSHVM 79 (428)
T ss_pred cccccccCCccccc--CCCCeeEEeeeee--EEEeCCCC----EEEEcchhHHhhcCCCC-CHHHHHHHHHHHhhcCCcc
Confidence 44668999877643 2345778887665 89999999 99999999999999999 9999999999999988766
Q ss_pred CCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCc
Q 005009 437 FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSY 516 (719)
Q Consensus 437 ~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~sy 516 (719)
+..+.+++..+|+++|++.+|.+ +++|+|+||||||||+|||+| |.|+..+| .+|.+||+|+++|
T Consensus 80 ~~~~~~~~~~~la~~L~~~~p~~-~~~v~f~~SGsEAve~AlklA-r~~~~~~g-------------~~r~kii~~~~~y 144 (428)
T PRK07986 80 FGGITHPPAIELCRKLVAMTPQP-LECVFLADSGSVAVEVAMKMA-LQYWQAKG-------------EPRQRFLTLRHGY 144 (428)
T ss_pred ccccCCHHHHHHHHHHHhhCCCC-cCEEEEeCCcHHHHHHHHHHH-HHHHHhcC-------------CCCcEEEEECCCc
Confidence 54568999999999999998754 689999999999999999999 77764432 3478999999999
Q ss_pred ccCccccccccCCC-CCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchh
Q 005009 517 HGDTLGAMEAQAPS-PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSD 595 (719)
Q Consensus 517 HG~t~galslt~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~ 595 (719)
||+|.+++++++.. .++.. +.++ .++..+++.|+.+. . ++
T Consensus 145 HG~t~~a~s~~~~~~~~~~~--------~~~~--------~~~~~~~~~p~~~~-----------~------------~~ 185 (428)
T PRK07986 145 HGDTFGAMSVCDPDNSMHSL--------YKGY--------LPENLFAPAPQSRF-----------D------------GE 185 (428)
T ss_pred CCCcHhhhcccCCchhhhhc--------cCCC--------CCCCEEECCCCccc-----------c------------hh
Confidence 99999999998742 22221 1111 12234455553221 0 01
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccc
Q 005009 596 LASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA 675 (719)
Q Consensus 596 ~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~ 675 (719)
+...+.+.+++.+++ .++++||||+||++||+||++++|++||++|+++|++||++||+|||||||||||++|++
T Consensus 186 ~~~~d~~~l~~~l~~-----~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~fa~ 260 (428)
T PRK07986 186 WDERDIAPFARLMAA-----HRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFAC 260 (428)
T ss_pred hHHHHHHHHHHHHHh-----CCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCCeeee
Confidence 112224667777763 357899999999559999999999999999999999999999999999999999999999
Q ss_pred cccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 676 DLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 676 e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
+++|++|||+|+||+|||||+|+||+++++++++.|..
T Consensus 261 ~~~gv~PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~ 298 (428)
T PRK07986 261 EHAGIAPDILCLGKALTGGTMTLSATLTTREVAETISN 298 (428)
T ss_pred cccCCCCCEEEechhhhCCcccCcchhchHHHHHHhhc
Confidence 99999999999999999999999999999999999865
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-56 Score=497.14 Aligned_cols=277 Identities=25% Similarity=0.278 Sum_probs=227.8
Q ss_pred EEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccC
Q 005009 378 VIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVG 457 (719)
Q Consensus 378 vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~ 457 (719)
++++++| +|+||.||| +||||++|+|++++||+ ||+|++|+++|++++.+.....+.+++..+|+|+|++.+|
T Consensus 16 ~i~~a~G--~~l~D~dG~----~ylD~~~g~~~~~lGh~-hp~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p 88 (447)
T PRK06917 16 VISHGKG--VYLYDQNGN----KYFDGSSGAVTAGIGHG-VKEIADAIKEQAEEVSFVYRSQFTSEPAEKLAKKLSDLSP 88 (447)
T ss_pred eEEeeee--eEEEeCCCC----EEEECchhHHhccCCCC-CHHHHHHHHHHHhhCcCccccccCCHHHHHHHHHHHHhCC
Confidence 5777666 589999999 99999999999999999 9999999999999987664444679999999999999987
Q ss_pred CCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCC
Q 005009 458 KGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQ 537 (719)
Q Consensus 458 ~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~ 537 (719)
.+ +++++|+||||||||+|||+| |+|+..+|. ++|.+||+|+++|||+|.+++++++...++..
T Consensus 89 ~~-~~~v~f~~sGsEAve~AlklA-r~~~~~rg~------------t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~-- 152 (447)
T PRK06917 89 GD-LNWSFFVNSGSEANETAMKIA-IQHFQERGI------------QGKHKILSRWMSYHGITMGALSMSGHPLRRQR-- 152 (447)
T ss_pred CC-CCEEEEeCChHHHHHHHHHHH-HHHHHhcCC------------CCCCEEEEECCCcCCccHHHHHhcCCcccccc--
Confidence 54 579999999999999999999 677655544 67889999999999999999999875543321
Q ss_pred CCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCC
Q 005009 538 QPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVS 617 (719)
Q Consensus 538 ~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~ 617 (719)
+.+.+ ++...++.|.+++++ +++ +...+...+.+.+++.+++ .++
T Consensus 153 ------~~~~~--------~~~~~~~~p~~~~~~--------~~~---------~~~~~~~~~~~~le~~i~~----~~~ 197 (447)
T PRK06917 153 ------FVSLL--------EDYPTISAPYCYRCP--------VQK---------VYPTCQLACATELETAIER----IGA 197 (447)
T ss_pred ------CCCCC--------CCCeEeCCCcccccc--------cCC---------ChHHHHHHHHHHHHHHHHh----cCC
Confidence 11111 122344555444321 111 1123344556778888874 234
Q ss_pred CcEEEEEEcccccc-CCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCCcc
Q 005009 618 GCIGALIIEPVVHA-AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVI 696 (719)
Q Consensus 618 ~~iAAvIvEPViqg-~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG~~ 696 (719)
++|||||+||| || .||+++||++||++|+++|++||++||+|||||||||||++|+++++||+|||+|+||+|||||+
T Consensus 198 ~~iAAvi~EPi-~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~~~a~~~~gv~PDi~~~gK~l~~G~~ 276 (447)
T PRK06917 198 EHIAAFIAEPI-IGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMFAMEHWGVEPDIMTLGKGLGAGYT 276 (447)
T ss_pred CceEEEEEecc-ccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccchhhHHhcCCCCCEEEeeehhccCCc
Confidence 68999999998 88 57899999999999999999999999999999999999999999999999999999999999988
Q ss_pred chheeEeCHHHHhhhcC
Q 005009 697 PLAATLATNAVFDSFVG 713 (719)
Q Consensus 697 Plsavl~~~~i~~~~~~ 713 (719)
|+|++++++++++.|..
T Consensus 277 Pi~a~~~~~~i~~~~~~ 293 (447)
T PRK06917 277 PIAATVVSDRVMEPILR 293 (447)
T ss_pred ceEEEEEcHHHHHHHhc
Confidence 99999999999998864
|
|
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-56 Score=483.64 Aligned_cols=269 Identities=29% Similarity=0.436 Sum_probs=221.9
Q ss_pred EEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccC
Q 005009 378 VIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVG 457 (719)
Q Consensus 378 vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~ 457 (719)
+|++++|. |+||.||+ +||||++|+|++++||+ ||+|++|+++|++++.+.++..+.+++..+|+++|++.+|
T Consensus 1 ~i~~a~G~--~l~d~dG~----~~lD~~~~~~~~~lGh~-~p~i~~ai~~~~~~~~~~~~~~~~~~~~~~la~~L~~~~p 73 (339)
T PF00202_consen 1 FIERAEGA--YLWDVDGR----EYLDFMSGYGSVNLGHN-HPEIAEAIAEQANKLNYVSFSGFTHPEAAELAEKLAELFP 73 (339)
T ss_dssp EEEEEEBT--EEEETTSE----EEEESSHHHHTTTT-BT--HHHHHHHHHHHHHCSSCSTTTSEEHHHHHHHHHHHHHSS
T ss_pred CeEEeecC--EEEECCCC----EEEECCCCccceecCCC-ccccchhHHHHhhhcccccccceeccchhhhhhhhhhccc
Confidence 46777776 79999999 99999999999999999 9999999999999998887677889999999999999997
Q ss_pred CCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCC
Q 005009 458 KGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQ 537 (719)
Q Consensus 458 ~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~ 537 (719)
.+ +++|+|++|||||||+|||+| |+|..+++. ++|.+||+|+++|||+|.+++++++...++.. .
T Consensus 74 ~~-~~~v~f~~sGseAve~Alkla-~~~~~~~~~------------~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~-~ 138 (339)
T PF00202_consen 74 GG-LDRVFFANSGSEAVEAALKLA-RQYHNKRAY------------TGRRKILAFEGSYHGRTLGALSLTGNPPYRKG-F 138 (339)
T ss_dssp TT-EEEEEEESSHHHHHHHHHHHH-HHHHHHTHH------------HTTTEEEEETTTB-TSSHHHHHHSSSTHHHTT-T
T ss_pred cc-cceeeeccCchHHHHHHHHHh-hcccccccc------------cCCceEEEeeeeeeccCcccccccCCcccccc-c
Confidence 64 799999999999999999999 555544332 56789999999999999999999887655543 1
Q ss_pred CCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCC
Q 005009 538 QPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVS 617 (719)
Q Consensus 538 ~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~ 617 (719)
.++ ..+..++|+|+... +.....+.+.+++.+.+ ..+
T Consensus 139 ~~~---------------~~~~~~~p~~~~~~------------------------~~~~~~~~~~~~~~~~~----~~~ 175 (339)
T PF00202_consen 139 GPL---------------YPGVVFVPFPDPAA------------------------DEEEQACLNALEELIAA----LNA 175 (339)
T ss_dssp CSS---------------STTEEEEETTCHHH------------------------HHHHHHHHHHHHHHHHH----HHG
T ss_pred ccc---------------ccccccccCCccch------------------------hhhHHHHHHHHHHHHHh----hcC
Confidence 111 12234556654431 11222334455555543 346
Q ss_pred CcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCCccc
Q 005009 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIP 697 (719)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG~~P 697 (719)
++|||||+||| ||++|++++|++||++|+++|+|||++||+|||||||||||++|+++++|++|||+|+||+|||| +|
T Consensus 176 ~~iaavivEPi-~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~~~~gv~PDiv~~gK~l~gG-~p 253 (339)
T PF00202_consen 176 DEIAAVIVEPI-QGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFFASEHYGVDPDIVTFGKGLGGG-LP 253 (339)
T ss_dssp GGEEEEEEESS-BTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGHHHHTSSSSEEEEEGGGGTT-SS
T ss_pred CcEEEEEEecc-ccccCccccccchhhehcccccccccceecccccccccccCCccceecccccCcccccccchhhh-hh
Confidence 79999999997 99999999999999999999999999999999999999999999999999999999999999999 89
Q ss_pred hheeEeCHHHHhhhcC
Q 005009 698 LAATLATNAVFDSFVG 713 (719)
Q Consensus 698 lsavl~~~~i~~~~~~ 713 (719)
+|++++++++++.+..
T Consensus 254 ~sav~~~~~i~~~~~~ 269 (339)
T PF00202_consen 254 ISAVLGSEEIMEAFQP 269 (339)
T ss_dssp EEEEEEEHHHHTTSCT
T ss_pred cccccccchhhccccc
Confidence 9999999999998854
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-55 Score=490.16 Aligned_cols=253 Identities=23% Similarity=0.318 Sum_probs=212.3
Q ss_pred CCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCe
Q 005009 384 GENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASR 463 (719)
Q Consensus 384 G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~r 463 (719)
+.|+|+||.||| +||||++|+|++++||+ ||+|++|+++|++++.+.+ ..+.+++..+|||+|++.+|.+ +++
T Consensus 64 ~~g~~l~D~dG~----~ylD~~~g~~~~~lGh~-hp~v~~Av~~ql~~l~~~~-~~~~~~~~~~lAe~L~~~~p~~-~~~ 136 (442)
T TIGR03372 64 GGLNTLIDTQGN----EFIDCLGGFGIFNVGHR-NPNVIAAVENQLAKQPLHS-QELLDPLRALLAKTLAALTPGK-LKY 136 (442)
T ss_pred CCeeEEEECCCC----EEEECCccHHhhhcCCC-CHHHHHHHHHHHHhCCCcc-cccCCHHHHHHHHHHHHhCCCC-cCE
Confidence 445689999999 99999999999999999 9999999999999987654 2456999999999999998765 589
Q ss_pred EEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccC
Q 005009 464 AYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSG 543 (719)
Q Consensus 464 v~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~ 543 (719)
++|+||||||||+|||+| |.|+..+ +|.+||+++++|||+|.+++++|+...++..
T Consensus 137 v~f~~SGsEA~e~AlklA-r~~t~~~---------------gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~-------- 192 (442)
T TIGR03372 137 SFFCNSGTESVEAALKLA-KAYQSPR---------------GKFTFIAASGAFHGKSLGALSATAKPAFRKP-------- 192 (442)
T ss_pred EEEeCCchHHHHHHHHHH-HHHHhhc---------------CCcEEEEECCCccCCCHHHhhccCCcccCCC--------
Confidence 999999999999999999 7887432 3578999999999999999999986544432
Q ss_pred CCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEE
Q 005009 544 RGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGAL 623 (719)
Q Consensus 544 ~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAv 623 (719)
+.+. .+++.++|+ +|. +.+++.+++.. .+++++|||
T Consensus 193 ~~p~--------~~~~~~~p~----------------~d~------------------~~~~~~l~~~~--~~~~~vAav 228 (442)
T TIGR03372 193 FMPL--------LPGFHHVAF----------------GDI------------------EAMLKALNECK--KTGDDVAAI 228 (442)
T ss_pred CCCC--------CCCCEEeCC----------------CCH------------------HHHHHHHHHHh--cCCCcEEEE
Confidence 1111 123334443 332 12223332210 246789999
Q ss_pred EEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCCccchheeEe
Q 005009 624 IIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLA 703 (719)
Q Consensus 624 IvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~ 703 (719)
|+||| ||+||+++||++||++|+++|++||++||+|||||||||||+||+++++|++|||+|+||+|||||+|+||+++
T Consensus 229 IvEpv-~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDivt~gK~lg~G~~Pigavv~ 307 (442)
T TIGR03372 229 ILEPI-QGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGVQPDILCLAKALGGGVMPIGATIA 307 (442)
T ss_pred EEeCc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccchhhhhcCCCCCeeeehhhhcCCcccceEEEe
Confidence 99998 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHhhhc
Q 005009 704 TNAVFDSFV 712 (719)
Q Consensus 704 ~~~i~~~~~ 712 (719)
++++++.|.
T Consensus 308 ~~~i~~~~~ 316 (442)
T TIGR03372 308 TEAVFSVLF 316 (442)
T ss_pred cHHHHHhhh
Confidence 999999884
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-55 Score=491.97 Aligned_cols=274 Identities=20% Similarity=0.210 Sum_probs=221.5
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|+++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|+++..+.....+.++...+|+++|++
T Consensus 45 ~p~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~la~~L~~ 117 (464)
T PRK06938 45 IPLALKRARGI--YVEDVEGR----QFIDCLAGAGTLALGHN-HPVVIEAIQQVLADELPLHTLDLTTPVKDQFVQDLFA 117 (464)
T ss_pred CCceEEecccc--EEEeCCCC----EEEEccCCccccccCCC-CHHHHHHHHHHHHhhhcccccccCCHHHHHHHHHHHH
Confidence 36678887665 89999999 99999999999999999 9999999999998643222224679999999999999
Q ss_pred ccCCCCC--CeEEEe-CChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCC
Q 005009 455 GVGKGWA--SRAYFS-DNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP 531 (719)
Q Consensus 455 ~~~~~~~--~rv~f~-~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~ 531 (719)
.+|.+.. ++++|+ ||||||||+|||+| |.|++| .+||+|+++|||+|.+++++++...
T Consensus 118 ~~p~~~~~~~~v~f~~~SGSEAve~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~als~t~~~~ 178 (464)
T PRK06938 118 SLPEAFAREAKIQFCGPTGTDAVEAALKLV-KTATGR------------------STVLSFQGGYHGMSQGALSLMGNLG 178 (464)
T ss_pred hCcccccccceEEEeCCCcHHHHHHHHHHH-HHhhCC------------------CeEEEECCccCCccHHHHhhcCCcc
Confidence 8875421 378776 89999999999999 787654 5899999999999999999998644
Q ss_pred CCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcC
Q 005009 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611 (719)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~ 611 (719)
++.. +++. .++..++++|+.++++ |+. ..+++...+.+.+++.+++.
T Consensus 179 ~~~~--------~~~~--------~~~~~~~~~p~~~~~~--------~~~---------~~~~~~~~~~~~l~~~i~~~ 225 (464)
T PRK06938 179 PKKP--------LGAL--------LPGVQFLPYPYDYRCP--------FGL---------GGEAGVRANLHYLENLLDDP 225 (464)
T ss_pred cccc--------CCCC--------CCCcEEeCCCcccccc--------ccC---------chhhHHHHHHHHHHHHHHhh
Confidence 4332 1111 1234567777665432 111 11233445677888888642
Q ss_pred CCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhcc
Q 005009 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLL 691 (719)
Q Consensus 612 ~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~L 691 (719)
. .++++|||||+||| ||+||+++||++||++||++|++||++||+|||||||||||+||+++++||+|||+|+||+|
T Consensus 226 ~--~~~~~iAAvI~EPi-qg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~e~~gv~PDiv~~gKgl 302 (464)
T PRK06938 226 E--SGVVLPAAVILEVV-QGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGIIPDVVVLSKAI 302 (464)
T ss_pred c--cCCCceEEEEEccc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcHHHHHHhcCCCCCEEEeeccc
Confidence 1 13368999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccchheeEeCHHHHhhhc
Q 005009 692 TGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 692 ggG~~Plsavl~~~~i~~~~~ 712 (719)
||| +|+||+++++++ +.+.
T Consensus 303 ggG-~PlsAv~~~~~~-~~~~ 321 (464)
T PRK06938 303 GGS-LPLAVVVYREWL-DTWQ 321 (464)
T ss_pred cCC-CceEEEeehhHh-hccC
Confidence 999 799999999996 6653
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-55 Score=491.33 Aligned_cols=261 Identities=23% Similarity=0.307 Sum_probs=219.6
Q ss_pred CCeEEEEeecC-CceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHH
Q 005009 374 EAVTVIDSRCG-ENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELL 452 (719)
Q Consensus 374 ~~p~vi~~~~G-~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L 452 (719)
..|.++++++| . |+||.||| +||||++|+|++++||+ ||+|++|+++|++++.+.+ ..+.++...+|+++|
T Consensus 62 ~~~~~~~~~~G~~--~l~D~dG~----~ylD~~~g~~~~~lGH~-~p~v~~Ai~~ql~~l~~~~-~~~~~~~~~~lae~L 133 (459)
T PRK11522 62 DYGAVEWQAGGLN--TLVDTQGQ----EFIDCLGGFGIFNVGHR-NPVVVSAVQNQLAKQPLHS-QELLDPLRAMLAKTL 133 (459)
T ss_pred CCCeeEEeccCeE--EEEECCCC----EEEECCcCHHhhhcCCC-CHHHHHHHHHHHhhCcccc-cccCCHHHHHHHHHH
Confidence 34667877766 5 89999999 99999999999999999 9999999999999987754 246799999999999
Q ss_pred HhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCC
Q 005009 453 LQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY 532 (719)
Q Consensus 453 ~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~ 532 (719)
++.+|.+ +++++|+||||||||+|||+| |.|++++ +|.+||+++++|||+|.+++++++...+
T Consensus 134 ~~~~p~~-~~~v~f~~SGsEAve~AlklA-r~~t~~~---------------gr~~ii~~~~~yHG~t~~~ls~~~~~~~ 196 (459)
T PRK11522 134 AALTPGK-LKYSFFCNSGTESVEAALKLA-KAYQSPR---------------GKFTFIATSGAFHGKSLGALSATAKSTF 196 (459)
T ss_pred HHhCCCC-CCEEEEeCCchHHHHHHHHHH-HHHhccC---------------CCcEEEEecCCCCCCcHHHhhhcCCccc
Confidence 9998765 689999999999999999999 8888653 2568999999999999999999986544
Q ss_pred CCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCC
Q 005009 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (719)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~ 612 (719)
+.+ +.+.. +++.++ +|||. +.+++.++...
T Consensus 197 ~~~--------~~~~~--------~~~~~~----------------~~~d~------------------~~l~~~l~~~~ 226 (459)
T PRK11522 197 RKP--------FMPLL--------PGFRHV----------------PFGNI------------------EAMRTALSECK 226 (459)
T ss_pred ccC--------CCCCC--------CCCccc----------------CCCCH------------------HHHHHHHHHhh
Confidence 432 11110 112222 24442 23444554211
Q ss_pred CCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccC
Q 005009 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692 (719)
Q Consensus 613 ~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lg 692 (719)
..+++|||||+||| ||++|+++||++||++|+++|++||++||+|||||||||||+||+++++|++|||+|+||+||
T Consensus 227 --~~~~~iAavIvEpv-~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDivt~gK~lg 303 (459)
T PRK11522 227 --KTGDDVAAVILEPI-QGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENVQPDILCLAKALG 303 (459)
T ss_pred --ccCCcEEEEEEecc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhhhhhccCCCCCEEEechhhh
Confidence 24578999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchheeEeCHHHHhhhc
Q 005009 693 GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 693 gG~~Plsavl~~~~i~~~~~ 712 (719)
|||+|+||+++++++++.|.
T Consensus 304 gG~~Pigav~~~~~i~~~~~ 323 (459)
T PRK11522 304 GGVMPIGATIATEEVFSVLF 323 (459)
T ss_pred CCCccceeEEEcHHHHHHhc
Confidence 99999999999999999874
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-54 Score=487.45 Aligned_cols=277 Identities=21% Similarity=0.255 Sum_probs=226.8
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|+++++++|. ||||.||| +||||++|+|++++||+ ||+|++|+++|++++.+..+..+.+++..+|+++|++
T Consensus 35 ~p~~~~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~i~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~ 107 (457)
T PRK05639 35 FPLVPKRGFGA--LIEDVDGN----VFIDFLAGAAAASTGYS-HPKLVKAVQEQVALIQHSMIGYTHSERAIRVAEKLAE 107 (457)
T ss_pred CCceEEeeecC--EEEeCCCC----EEEECCcCHHhhccCCC-CHHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHh
Confidence 36788887776 89999999 99999999999999999 9999999999999987765433457899999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCC-CCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYT 533 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~-~~~ 533 (719)
.+|.+ +++|+|+||||||||+|||+| |++++| .+||+|+++|||+|.+++++++.. .++
T Consensus 108 ~~p~~-~~~v~f~~SGsEA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~a~s~~~~~~~~~ 167 (457)
T PRK05639 108 ISPIE-NPKVLFGLSGSDAVDMAIKVS-KFSTRR------------------PWILAFIGAYHGQTLGATSVAAFQSSQK 167 (457)
T ss_pred hCCCC-cCEEEEeCchHHHHHHHHHHH-HHhcCC------------------CeEEEECCCcCCccHHHHHHcCCCcccc
Confidence 98754 579999999999999999999 788654 589999999999999999998742 122
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
. ++.+. .+++.++|+|+.++++.. +++. .+.+.+.+.+.+.+++.+....
T Consensus 168 ~--------~~~~~--------~~~~~~~p~~~~~~~~~~------~~~~-------~~~~~~~~~~~~~le~~l~~~~- 217 (457)
T PRK05639 168 R--------GFSPL--------MPNVVWIPYPNPYRNPWG------INGY-------EEPDELINRFLDYLENYVFSHV- 217 (457)
T ss_pred c--------CCCCC--------CCCceEeCCCcccccccc------cccc-------CCHHHHHHHHHHHHHHHHHHhh-
Confidence 2 11111 134566777776653210 1110 1123445566777887764310
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCC
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lgg 693 (719)
.++++|||||+||| ||+||+++||++||++|+++|++||++||+|||||||||||++|+++++|++|||+|+||+|||
T Consensus 218 -~~~~~iAAvI~EPi-qg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~~gK~l~g 295 (457)
T PRK05639 218 -VPPDEVAALFAEPI-QGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWFASEWFEVKPDLIIFGKGVAS 295 (457)
T ss_pred -cCCCceEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCchHHHHHhcCCCCCEEEechhhcC
Confidence 24679999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchheeEeCHHHHhhh
Q 005009 694 GVIPLAATLATNAVFDSF 711 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~ 711 (719)
| +|+|++++++++++.+
T Consensus 296 G-~pi~av~~~~~i~~~~ 312 (457)
T PRK05639 296 G-MGLSGVIGRKELMDLT 312 (457)
T ss_pred C-CcceeEEehHHHHhhc
Confidence 9 7999999999999843
|
|
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-54 Score=485.63 Aligned_cols=274 Identities=19% Similarity=0.188 Sum_probs=219.0
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|+++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|+++..+.....+.++...+||++|++
T Consensus 40 ~p~~~~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGH~-~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lAe~L~~ 112 (459)
T PRK06931 40 LPLAIAKAQGV--WVTDVEGN----QYLDCLAGAGTLALGHN-HPDVLQSIQDVLTSGLPLHTLDLTTPLKDAFSEYLLS 112 (459)
T ss_pred CCceEEecccc--EEEeCCCC----EEEEcccchhhccCCCC-CHHHHHHHHHHHhhhccccccccCCHHHHHHHHHHHH
Confidence 36778887665 89999999 99999999999999999 9999999999998744322234678999999999999
Q ss_pred ccCCCC--CCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCC
Q 005009 455 GVGKGW--ASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY 532 (719)
Q Consensus 455 ~~~~~~--~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~ 532 (719)
.+|... ...+||+||||||||+|||+| |.|++| .+||+|+++|||+|.+++++++...+
T Consensus 113 ~~p~~~~~~~~~f~~~SGsEAve~AlklA-r~~tgr------------------~~Ii~~~~~yHG~t~~als~t~~~~~ 173 (459)
T PRK06931 113 LLPGQGKEYCLQFTGPSGADAVEAAIKLA-KTYTGR------------------SNVISFSGGYHGMTHGALAVTGNLSP 173 (459)
T ss_pred hCCCccccceEEEeCCCcHHHHHHHHHHH-HHhcCC------------------CeEEEECCCcCCccHHHHhhcCCccc
Confidence 887431 124567799999999999999 788654 58999999999999999999986544
Q ss_pred CCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCC
Q 005009 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (719)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~ 612 (719)
+.. +.+ ..+++.++++|+.++++ |+.. .++..+.+.+.+++.+++..
T Consensus 174 ~~~--------~~~--------~~~~~~~~~~~~~~~~~--------~~~~---------~~~~~~~~~~~~~~~~~~~~ 220 (459)
T PRK06931 174 KNA--------VNG--------LMPGVQFMPYPHEYRCP--------LGIG---------GEAGVKALTYYFENFIEDVE 220 (459)
T ss_pred ccC--------CCC--------CCCCcEEeCCCcccccc--------ccCC---------chhHHHHHHHHHHHHHHhhh
Confidence 332 111 11345667888777542 2210 11222333444555554210
Q ss_pred CCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccC
Q 005009 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692 (719)
Q Consensus 613 ~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lg 692 (719)
.++++|||||+||| ||+||+++||++||++||++|++||++||+|||||||||||+||+++++||+|||+|+||+||
T Consensus 221 --~~~~~iAAvI~EPi-qg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~a~~~~gv~PDivt~gK~l~ 297 (459)
T PRK06931 221 --SGVRKPAAVILEAI-QGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMFAFEHAGIEPDIIVMSKAVG 297 (459)
T ss_pred --cCCCceEEEEEccc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCchHHHhhhcCCCCCEEEeccccc
Confidence 24578999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchheeEeCHHHHhhhc
Q 005009 693 GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 693 gG~~Plsavl~~~~i~~~~~ 712 (719)
|| +|+|++++++++ +.|.
T Consensus 298 gG-~Pi~av~~~~~~-~~~~ 315 (459)
T PRK06931 298 GG-LPLAVLGIKKEF-DAWQ 315 (459)
T ss_pred CC-cceeeeeeHHHH-hhcc
Confidence 99 799999999875 7663
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-54 Score=483.18 Aligned_cols=276 Identities=23% Similarity=0.322 Sum_probs=228.3
Q ss_pred CccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCC
Q 005009 360 LFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPE 439 (719)
Q Consensus 360 ~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~ 439 (719)
++|+|++.. ..|+++++++|. |+||.||| +||||++ .|++++||+ ||+|++|+++|++++.+.. ..
T Consensus 44 ~~~~~~~~~-----~~~~~i~~a~G~--~l~D~dG~----~ylD~~g-~~~~~lGh~-~p~v~~Ai~~ql~~~~~~~-~~ 109 (459)
T PRK06082 44 VFLHQAMST-----PCLDVLASAEGI--YIEDVDGK----KYMDFHG-NNVHQLGYG-HPHVIEKVKEQMAKLPFSP-RR 109 (459)
T ss_pred HhcccccCC-----CCCceEEeeeee--EEEECCCC----EEEEccc-HhhcccCCC-CHHHHHHHHHHHHhCCCcc-Cc
Confidence 356665331 236788887775 89999999 9999985 599999999 9999999999999987754 35
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
+.+++..+|+++|++.+|.+ +++++|++|||||||+|+|+| |+|++| .+||+|+++|||+
T Consensus 110 ~~~~~~~~lae~L~~~~p~~-~~~v~f~~sGseAve~AlklA-r~~tgr------------------~~ii~~~~~yHG~ 169 (459)
T PRK06082 110 FTNETAIECAEKLTEIAGGE-LNRVLFAPGGTSAIGMALKLA-RHITGN------------------FKVVSLWDSFHGA 169 (459)
T ss_pred cCCHHHHHHHHHHHHhCCCC-CCEEEECCCcHHHHHHHHHHH-HHhcCC------------------CEEEEEeCCCcCc
Confidence 67999999999999998753 579999999999999999999 788654 5899999999999
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
|.+++++++...++.. +++. .+++.+++.|+.++++ |++. +.+...
T Consensus 170 t~~a~s~~~~~~~~~~--------~~~~--------~~~~~~~~~~~~~~~~--------~~~~----------~~~~~~ 215 (459)
T PRK06082 170 SLDAISVGGEACFRQG--------MGPL--------MAGVERIPPAVSYRGA--------FPDA----------DGSDVH 215 (459)
T ss_pred cHHHHhhcCCcccccC--------CCCC--------CCCCEEeCCCcccccc--------cCCh----------hHHHHH
Confidence 9999999986554432 1111 1345667777666432 3331 234455
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccC
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~g 679 (719)
+.+.+++.+++ .+++||||+||| ||+| +++||++||++|+++|++||++||+|||||||||||+||+++++|
T Consensus 216 ~~~~l~~~i~~------~~~vAavIvEPv-~g~g-~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~fa~e~~g 287 (459)
T PRK06082 216 YADYLEYVIEK------EGGIGAFIAEAV-RNTD-VQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAYG 287 (459)
T ss_pred HHHHHHHHHhc------CCCEEEEEECCc-cCCC-CcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHhHhhC
Confidence 67888888863 358999999998 9985 788999999999999999999999999999999999999999999
Q ss_pred CCcceeeehhccCCCccchheeEeCHHHHhhh
Q 005009 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 680 v~PDIvtlgK~LggG~~Plsavl~~~~i~~~~ 711 (719)
++|||+|+||+|||||+|+|++++++++++.+
T Consensus 288 v~PDiv~~gKgl~gG~~P~~av~~~~~i~~~~ 319 (459)
T PRK06082 288 IEPDILCIGKGLGGGLVPIAAMITKDKYNTAA 319 (459)
T ss_pred CCCCEEEecccccCCCCcceEEEEcHHHHhhc
Confidence 99999999999999988999999999998765
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-53 Score=477.21 Aligned_cols=289 Identities=31% Similarity=0.495 Sum_probs=239.2
Q ss_pred cchhhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhc
Q 005009 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (719)
Q Consensus 353 L~e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~ 432 (719)
+.++..+++|+|++++... ..|+++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~--~~p~~~~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~ 74 (423)
T PRK05964 4 LMALDLSHVWHPYTQMKLH--PPPIPIVRAEGA--YLYLADGR----ELIDAISSWWVATHGHN-HPYIDQAIREQLDRL 74 (423)
T ss_pred hhhhhhcceecCCCCcccc--CCCeeEEecccc--EEEeCCCC----EEEEcchhHHhccCCCC-CHHHHHHHHHHHhhC
Confidence 3445567789998775432 257888887775 89999999 99999999999999999 999999999999998
Q ss_pred ccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEE
Q 005009 433 GHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (719)
Q Consensus 433 ~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~ 512 (719)
.+..+..+.+++..+|+++|++.+|.+ +++|+|+||||||||+|||+| |.|+..+|. ++|.+||+|
T Consensus 75 ~~~~~~~~~~~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~A~kla-r~~~~~~~~------------~~r~~ii~~ 140 (423)
T PRK05964 75 DHVIFAGFTHEPAERLAQRLVALTPGG-LDHVFFSDSGSVAVEVALKMA-LQYWRNRGE------------PGRSRFLSL 140 (423)
T ss_pred CCccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEE
Confidence 876544578999999999999998754 689999999999999999999 777655443 568899999
Q ss_pred eCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccC
Q 005009 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (719)
Q Consensus 513 ~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d 592 (719)
+++|||+|.+++++++...++.. | . +. ..+..++++| ++|
T Consensus 141 ~~~yHG~t~~~ls~~~~~~~~~~----~-~---~~--------~~~~~~~~~~--------------~~d---------- 180 (423)
T PRK05964 141 RGGYHGDTIGTMSVGDRGGMHAL----Y-T---PL--------LFEQVTAPFP--------------PDG---------- 180 (423)
T ss_pred cCCcCCccHHHHhcCCCcccccc----c-c---Cc--------CCCCEEeCCC--------------cch----------
Confidence 99999999999999875443321 1 0 00 0122344444 222
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc
Q 005009 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (719)
Q Consensus 593 ~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~ 672 (719)
....+.+.+++.+.+ .++++||||+||++||+||++++|++||++|+++|++||++||+|||||||||||++
T Consensus 181 ---~~~~~~~~l~~~l~~-----~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~ 252 (423)
T PRK05964 181 ---YEQATLDALEALLEK-----HAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTL 252 (423)
T ss_pred ---hHHHHHHHHHHHHHh-----CCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcch
Confidence 123346778888863 457999999999449999999999999999999999999999999999999999999
Q ss_pred ccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhc
Q 005009 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 673 ~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
|+++++|+.|||+|+||+|+||++|+|++++++++++.|.
T Consensus 253 ~a~~~~~v~pDi~~~~K~l~gG~~p~~av~~~~~i~~~~~ 292 (423)
T PRK05964 253 FACEQAGVSPDIMCLSKGLTGGYLPLAATLCTAEIFEAFY 292 (423)
T ss_pred hHHHhcCCCCCeeeeehhhhcCcccceEEEEcHHHHHhhh
Confidence 9999999999999999999999899999999999999885
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-53 Score=477.61 Aligned_cols=274 Identities=20% Similarity=0.287 Sum_probs=229.8
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|+++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|++++.+.+...+.++...+|+++|++
T Consensus 24 ~p~~~~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGH~-~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~ 96 (445)
T PRK08593 24 YPLVIDHGYGA--TLTDVDGK----TYIDLLASASSQNVGHA-PPRVVEAIKAQADKFIHYTPAYMYHEPLVRLAKKLCE 96 (445)
T ss_pred CCceEEeeeeC--EEEeCCCC----EEEECCccHHhhcCCCC-CHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHH
Confidence 36788887665 89999999 99999999999999999 9999999999999988776545679999999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCC-CC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP-YT 533 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~-~~ 533 (719)
.+|.++.++|+|+||||||||+|||+| |.|++| .+||+|+++|||+|.+++++++... ++
T Consensus 97 ~~p~~~~~~v~f~~SGseA~e~AiklA-r~~tgr------------------~~ii~~~~~YHG~t~~als~s~~~~~~~ 157 (445)
T PRK08593 97 LAPGDFEKRVTFGLSGSDANDGIIKFA-RAYTGR------------------PYIISFTNAYHGSTYGSLSMSGISLNMR 157 (445)
T ss_pred hCCCCCCCEEEECCchHHHHHHHHHHH-HHhhCC------------------CeEEEECCCcCCCcHHHHhhcCCCcccc
Confidence 987653479999999999999999999 788754 4899999999999999999997432 22
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
.. +++. .++..++|+|+.+++.. .. ...+....+++.+++.++++
T Consensus 158 ~~--------~~~~--------~~~~~~~~~p~~~~~~~--------~~---------~~~~~~~~~~~~~~~~~~~~-- 202 (445)
T PRK08593 158 RK--------YGPL--------LPGFVHIPFPDKYRGMY--------EE---------PDANFVEEYLAPLKEMFEKY-- 202 (445)
T ss_pred cC--------CCCC--------CCCcEEeCCCccccccc--------cC---------CcHHHHHHHHHHHHHHHHhh--
Confidence 21 1111 13456778887765421 11 01233455667777777642
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCC
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lgg 693 (719)
..++++||||+||| ||+||+++||++||++|+++|++||++||+|||||||||||++|+++++|++|||+|+||+|||
T Consensus 203 -~~~~~iAavI~EPv-~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~a~~~~gv~pDi~t~gK~l~~ 280 (445)
T PRK08593 203 -LPADEVACIVIETI-QGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNITPDLMSFGKSLAG 280 (445)
T ss_pred -cCCCceEEEEEccc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHHHHHhcCCCCCEeeecccccC
Confidence 23578999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchheeEeCHHHHhhhc
Q 005009 694 GVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~ 712 (719)
| +|+|++++++++++.|.
T Consensus 281 G-~p~gav~~~~~i~~~~~ 298 (445)
T PRK08593 281 G-MPMSAIVGRKEIMESLE 298 (445)
T ss_pred C-cccEEEEEcHHHHhhhc
Confidence 9 79999999999999885
|
|
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-54 Score=441.81 Aligned_cols=259 Identities=23% Similarity=0.337 Sum_probs=223.9
Q ss_pred eEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhc
Q 005009 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (719)
Q Consensus 376 p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~ 455 (719)
|.++.+++|. ++||.+|+ +||||.|++++++.||| ||.|++|+++|++++..++. .+.++...++++.+.++
T Consensus 42 pvvf~ka~g~--~vwD~eGk----~ylDflsaysaVnqGhc-hpki~~aLqeq~~kLtlssr-afYnd~~~~f~~~vt~l 113 (427)
T KOG1402|consen 42 PVVFSKAKGS--RVWDPEGK----EYLDFLSAYSAVNQGHC-HPKIIKALQEQADKLTLSSR-AFYNDVLGEFAEYVTKL 113 (427)
T ss_pred ceEEEecCCc--EEECCCcc----chhhhhhhhhhcccCCC-CHHHHHHHHHHHhHhhhhhH-HHhhhhHHHHHHHHHHh
Confidence 6678777775 79999999 99999999999999999 99999999999999887663 46788999999999999
Q ss_pred cCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCC-CCCC
Q 005009 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYTG 534 (719)
Q Consensus 456 ~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~-~~~~ 534 (719)
+| .++|+-+|||+||+|.|+|+|+++.+..++. ..++.+|++..++|||+|+++++++..+ .|.
T Consensus 114 f~---~~kvlpmnTGaEa~Eta~KLaR~wgy~~K~i-----------p~nka~il~~~~nFhGrT~~ais~s~d~ds~~- 178 (427)
T KOG1402|consen 114 FG---YDKVLPMNTGAEAVETACKLARKWGYRKKNI-----------PKNKAKILSAENNFHGRTLGAISLSTDPDSWD- 178 (427)
T ss_pred cC---cceeeecccchhHHHHHHHHHHHHHHhhccC-----------CccceeEEEecccccCceeeeEEecCCcchhh-
Confidence 98 5899999999999999999995455555543 1478899999999999999999999754 222
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
++++|. |.+ +. -++|+| +++++..|+
T Consensus 179 --------~fgp~~--P~~-----~~----------------~v~Y~d------------------~eale~~l~----- 204 (427)
T KOG1402|consen 179 --------GFGPFL--PGV-----VD----------------KVPYGD------------------AEALEVALK----- 204 (427)
T ss_pred --------ccCCCC--CCc-----ce----------------eeccCC------------------HHHHHHHhc-----
Confidence 334432 111 11 134776 367787876
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
..++||||+||| ||++|+++||++||+++|+||+||+++||+||||||+||||+||+++|.+++||||.|||+|+||
T Consensus 205 --~~~vaaFivEPI-QGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~la~d~env~PDivilgKalSGG 281 (427)
T KOG1402|consen 205 --SPNVAAFIVEPI-QGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKLLACDYENVRPDIVILGKALSGG 281 (427)
T ss_pred --CCCeeEEEeecc-ccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCcEEEeehhhcCCCeEEEeccccCC
Confidence 379999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchheeEeCHHHHhhhcCC
Q 005009 695 VIPLAATLATNAVFDSFVGD 714 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~~~ 714 (719)
++|+|||++++++|..+..+
T Consensus 282 ~~Pvsavl~~~~im~~~~pg 301 (427)
T KOG1402|consen 282 VYPVSAVLADDDIMLNIKPG 301 (427)
T ss_pred eeeeEEEEecHHHHhccCCC
Confidence 99999999999999988653
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-53 Score=476.79 Aligned_cols=273 Identities=25% Similarity=0.302 Sum_probs=219.8
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|++++.+..+..+.++...+|+++|++
T Consensus 38 ~p~~i~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~ 110 (443)
T PRK06058 38 LPVYVARAGGG--IVEDVDGN----RLIDLGSGIAVTSVGNS-APRVVEAVREQVARFTHTCFMVTPYEGYVAVAEQLNR 110 (443)
T ss_pred CCceEEeeeee--EEEeCCCC----EEEEcCcchhhhccCCC-CHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHH
Confidence 36788887775 89999999 99999999999999999 9999999999999987655444568999999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCC-CC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP-YT 533 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~-~~ 533 (719)
.+|....++++|+||||||||+|||+| |.|++| .+||+++++|||+|.+++++|+... ++
T Consensus 111 ~~p~~~~~~v~f~~sGseA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~al~~~~~~~~~~ 171 (443)
T PRK06058 111 LTPGDHEKRSALFNSGAEAVENAVKIA-RSYTGR------------------QAVVVFDHAYHGRTNLTMALTAKSMPYK 171 (443)
T ss_pred hCCCCCCCEEEEeCCcHHHHHHHHHHH-HHhhCC------------------CeEEEECCCcCcChHHHHhhcCCCcccc
Confidence 887533469999999999999999999 788654 4899999999999999999987421 22
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
. ++++. .++..++++|++|+.. ++. ..+.+++...+.+.+++.+
T Consensus 172 ~--------~~~~~--------~~~~~~~~~~~~~~~~--------~~~-------~~~~~~~~~~~~~~l~~~~----- 215 (443)
T PRK06058 172 S--------GFGPF--------APEVYRAPMSYPYRDP--------KGL-------ATDGEEAAARAITVIEKQV----- 215 (443)
T ss_pred c--------ccCCC--------CCCceEcCCCcccccc--------ccc-------ccchHHHHHHHHHHHHHhh-----
Confidence 1 11111 1223445555444210 000 0111122333344444433
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCC
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lgg 693 (719)
.+++|||||+||+ ||+||+++||++||++|+++|++||++||+|||||||||||++|+++++|++|||+|+||+|||
T Consensus 216 --~~~~iAavi~EPi-~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~fa~~~~gv~PDiv~~gK~l~~ 292 (443)
T PRK06058 216 --GADNLAAVIIEPI-QGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEHEGIVPDLITTAKGIAG 292 (443)
T ss_pred --CCCceEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhhHHHhcCCCCCEEEEcccccC
Confidence 2578999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchheeEeCHHHHhhhcC
Q 005009 694 GVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~~ 713 (719)
| +|+|++++++++++.+..
T Consensus 293 G-~Pi~av~~~~~i~~~~~~ 311 (443)
T PRK06058 293 G-LPLSAVTGRAEIMDAPHP 311 (443)
T ss_pred C-CccEEEEEcHHHHhhccC
Confidence 9 799999999999998853
|
|
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-52 Score=470.04 Aligned_cols=274 Identities=24% Similarity=0.312 Sum_probs=226.6
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++| +|+||.||| +|||+++|+|++++||+ ||+|++|+++|++++.+.....+.+++..+||++|++
T Consensus 36 ~p~~~~~a~G--~~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lAe~L~~ 108 (441)
T PRK05769 36 YPLVIERGEG--VWVEDVDGN----VYLDFNAGIAVTNVGHA-HPKVVKAVKEQAEKFLHYSLTDFYYEPAVELAERLVE 108 (441)
T ss_pred CCeeEEecce--EEEEeCCCC----EEEECCCchhhcccCCC-CHHHHHHHHHHHHhccCccCcccCCHHHHHHHHHHHH
Confidence 4677877666 589999999 99999999999999999 9999999999999988765545679999999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCC-CC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP-YT 533 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~-~~ 533 (719)
.+|.+.+++|+|+||||||||+|||+| |+|++| .+||+|+++|||+|.+++++++... ++
T Consensus 109 ~~p~~~~~~v~f~~SGsEA~e~AlklA-r~~tgr------------------~~Ii~~~~~yHG~t~~~ls~t~~~~~~~ 169 (441)
T PRK05769 109 IAPGGFEKKVFFTNSGTESNEAAIKIA-RYHTGR------------------KYIIAFLGAFHGRTYGSLSLTASKPVQR 169 (441)
T ss_pred hCCCCCCCEEEECCchHHHHHHHHHHH-HHHhCC------------------CeEEEECCCcCCccHHHHHhcCCCcccc
Confidence 987544689999999999999999999 788764 4899999999999999999986422 22
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHH-hcCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNL-LQNP 612 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l-~~~~ 612 (719)
.. +.+ ..+++.++++|+.++++ |++. +.++..+.+.+.+++.+ ++.
T Consensus 170 ~~--------~~~--------~~~~~~~~~~~~~~~~~--------~~~~--------~~~~~~~~~~~~le~~~~~~~- 216 (441)
T PRK05769 170 KG--------FFP--------LMPGVIHVPYPNPYRNP--------WGIE--------NPEECGNAVLDFIEDYLFKKL- 216 (441)
T ss_pred cC--------CCC--------CCCCeEEeCCCcccccc--------ccCC--------chHHHHHHHHHHHHHHHHhhc-
Confidence 11 111 11345667777666432 3311 12234445667777733 321
Q ss_pred CCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccC
Q 005009 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692 (719)
Q Consensus 613 ~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lg 692 (719)
.++++|||||+||| ||++|+++||++||++|+++|++||++||+|||||||||||++|+++++|++|||+|+||++|
T Consensus 217 --~~~~~iaavi~Epv-~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~a~~~~gv~pDivt~~K~l~ 293 (441)
T PRK05769 217 --VPPEEVAAIIVEPI-QGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMFAIEHFGVEPDIITLAKAIA 293 (441)
T ss_pred --cCCCceEEEEECcc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccceehhhccCCCCCEEEEccccc
Confidence 24678999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchheeEeCHHHHhhh
Q 005009 693 GGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 693 gG~~Plsavl~~~~i~~~~ 711 (719)
|| +|+|++++++++++.+
T Consensus 294 ~G-~p~gav~~~~~i~~~~ 311 (441)
T PRK05769 294 GG-LPLGAVIGRAELMFLP 311 (441)
T ss_pred CC-cccEEEEEehhhhhcC
Confidence 99 7999999999998754
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-52 Score=468.96 Aligned_cols=273 Identities=19% Similarity=0.217 Sum_probs=218.7
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|+++..+.....+.++...+||++|++
T Consensus 21 ~p~~~~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~ 93 (442)
T TIGR00709 21 LPTAFAKAQGC--WVTDVEGK----EYLDFLAGAGTLALGHN-HPNMKQKILDYLQSGLPLHTLDLTTPLKDAFIEALLN 93 (442)
T ss_pred CCceEEecccc--EEEeCCCC----EEEEccccHhhhcCCCC-CHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHH
Confidence 36678887665 89999999 99999999999999999 9999999999999876554334678999999999999
Q ss_pred ccCCC--CCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCC
Q 005009 455 GVGKG--WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY 532 (719)
Q Consensus 455 ~~~~~--~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~ 532 (719)
++|.+ ...++||+||||||||+|||+| |+|++| .+||+++++|||+|.+++++++...+
T Consensus 94 ~~p~~~~~~~~~f~~~sGsEA~e~AlklA-r~~tgr------------------~~Ii~~~~~yHG~t~~~~s~t~~~~~ 154 (442)
T TIGR00709 94 IIPKRKMDYKLQFPGPSGADAVEAAIKLA-KTYTGR------------------TNVISFSGGFHGMTIGALAVTGNLFA 154 (442)
T ss_pred hCCCcCCCccEEEeCCCHHHHHHHHHHHH-HHhcCC------------------CeEEEEcCCcCCchHHHHhhcCChhh
Confidence 88742 1234666799999999999999 788654 48999999999999999999985444
Q ss_pred CCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCC
Q 005009 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (719)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~ 612 (719)
+.. +.+. .+++.++++|+.++++ |+. +.+.....+.+.+++.++...
T Consensus 155 ~~~--------~~~~--------~~~~~~~~~~~~~~~~--------~~~---------~~~~~~~~~~~~~~~~~~~~~ 201 (442)
T TIGR00709 155 KNA--------VGML--------MPGVQFMPYPHEYRCP--------FGI---------GGEAGSNASIEYFENFIEDVE 201 (442)
T ss_pred hcc--------CCCC--------CCCcEEeCCCcccccc--------ccC---------CchhHHHHHHHHHHHHHHhhc
Confidence 332 1111 1234456667665432 221 011222333444555554311
Q ss_pred CCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccC
Q 005009 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692 (719)
Q Consensus 613 ~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lg 692 (719)
...+++||||+||+ ||++|+++||++||++|+++|++||++||+|||||||||||+||+++++|++|||+|+||+||
T Consensus 202 --~~~~~iaavi~Epi-~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~ 278 (442)
T TIGR00709 202 --SGVDKPAAVILEAI-QGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFAFEHAGIEPDFVVMSKAVG 278 (442)
T ss_pred --cCCCceEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHHcCCCCcEEEEccccc
Confidence 24578999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchheeEeCHHHHhhh
Q 005009 693 GGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 693 gG~~Plsavl~~~~i~~~~ 711 (719)
|| +|+|+++++++ ++.+
T Consensus 279 ~G-~Pigav~~~~~-~~~~ 295 (442)
T TIGR00709 279 GG-LPLAVLLIAPE-FDAW 295 (442)
T ss_pred CC-cccEEEEEchH-Hhcc
Confidence 99 79999999999 5665
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-52 Score=462.10 Aligned_cols=267 Identities=24% Similarity=0.308 Sum_probs=223.2
Q ss_pred eEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhc
Q 005009 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (719)
Q Consensus 376 p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~ 455 (719)
|.++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|++++.+.....+.++...+|+++|++.
T Consensus 23 p~~i~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~~~ 95 (425)
T PRK07495 23 QIYADRAENA--EIWDKEGR----RYIDFAAGIAVVNTGHR-HPRVIAAVKAQLDRFTHTCHQVVPYENYVRLAERLNAL 95 (425)
T ss_pred CeeEEeeeec--EEEeCCCC----EEEEccccHHhhccCCC-CHHHHHHHHHHHhhccCcccCccCCHHHHHHHHHHHHh
Confidence 6788887775 89999999 99999999999999999 99999999999999887654456789999999999999
Q ss_pred cCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCC-CCCC
Q 005009 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYTG 534 (719)
Q Consensus 456 ~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~-~~~~ 534 (719)
+|.++.++|+|+||||||||+|||+| |.|++| .+||+|+++|||+|.+++++++.. .++.
T Consensus 96 ~p~~~~~~v~f~~SGseA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~~~~~~~~~~~~~~ 156 (425)
T PRK07495 96 VPGDFAKKTIFVTTGAEAVENAVKIA-RAATGR------------------SAVIAFGGGFHGRTFMGMSLTGKVVPYKV 156 (425)
T ss_pred CCCCCCCEEEECCchHHHHHHHHHHH-HHhhCC------------------CeEEEECCCcCCccHHHhhhcCCCccccc
Confidence 87653479999999999999999999 788654 489999999999999999998742 2222
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
++++. .++..++|+|+.+++. ..+.+++.+++.+.+.
T Consensus 157 --------~~~~~--------~~~~~~~~~~~~~~g~------------------------~~~~~~~~l~~~~~~~--- 193 (425)
T PRK07495 157 --------GFGAM--------MPDVYHVPFPVELHGV------------------------SVEQSLAALDKLFKAD--- 193 (425)
T ss_pred --------CCCCC--------CCCeEEecCCcccccc------------------------cHHHHHHHHHHHHHhc---
Confidence 22211 1345567776544210 0122346677777531
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
.+++++||||+||+ ||++|++++|++|+++|+++|++||++||+|||||||||||++|+++++|++|||+||||+||||
T Consensus 194 ~~~~~iaavi~EPv-~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~a~~~~gv~pDi~tlsK~l~~G 272 (425)
T PRK07495 194 VDPQRVAAIIIEPV-QGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLFAMEHHEVAADLTTMAKGLAGG 272 (425)
T ss_pred cCCCceEEEEECCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCceeecccCCCCCEEeehhhhcCC
Confidence 24578999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchheeEeCHHHHhhhcC
Q 005009 695 VIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~~ 713 (719)
+|+|++++++++++.+..
T Consensus 273 -~pigav~~~~~i~~~~~~ 290 (425)
T PRK07495 273 -FPLAAVTGRAEIMDAPGP 290 (425)
T ss_pred -ccceEEEEcHHHHhccCC
Confidence 799999999999998754
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-51 Score=461.44 Aligned_cols=256 Identities=22% Similarity=0.339 Sum_probs=212.7
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. |+||.||| +|||+++|+|++++||+ ||+|++|+++|++++.+. .+.++...+|+++|++
T Consensus 35 ~p~~~~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~---~~~~~~~~~la~~l~~ 104 (428)
T PRK12389 35 APVVMERGKGA--YFYDVDGN----KYIDYLAAYGPIITGHA-HPHITKAITEAAENGVLY---GTPTELEIEFAKMLKE 104 (428)
T ss_pred CCeEEEeccCC--EEEeCCCC----EEEEccccccccccCCC-CHHHHHHHHHHHHhCCcc---CCCCHHHHHHHHHHHH
Confidence 47788887665 89999999 99999999999999999 999999999999987653 3678999999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
.+|. +++|+|+||||||||+|||+| |.|++| .+||+|+++|||+|.+++++++...++.
T Consensus 105 ~~p~--~~~v~f~~sGseA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~~~~~~~~~~~~~ 163 (428)
T PRK12389 105 AIPS--LEKVRFVNSGTEAVMTTIRVA-RAYTGR------------------TKIIKFAGCYHGHSDLVLVAAGSGPSTL 163 (428)
T ss_pred hCCC--CcEEEEeCCHHHHHHHHHHHH-HHhhCC------------------CEEEEECCCcCCChHHHHHhcCCccccc
Confidence 8873 689999999999999999999 788754 5899999999999999999987433221
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
. .+...+ + + ....|+.++ ++||| .+.+++.+++
T Consensus 164 ~--~~~~~~----~--~---------~~~~~~~~~--------~~~~d------------------~~~l~~~l~~---- 196 (428)
T PRK12389 164 G--TPDSAG----V--P---------KSIAQEVIT--------VPFND------------------IEALKEALDK---- 196 (428)
T ss_pred C--CCCCCC----C--C---------CcccCceEE--------cCCCC------------------HHHHHHHHHh----
Confidence 0 010000 0 0 000111111 12444 2456677763
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
.++++||||+||| ||++|+++||++||++|+++|++||++||+||||||| |||.+|+++++|++|||+|+||+||||
T Consensus 197 -~~~~vaavi~EPv-~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~-Rt~~~~a~~~~gv~PDivt~gK~lggG 273 (428)
T PRK12389 197 -WGDEVAAVLVEPI-VGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF-RFMYGGAQDLLGVEPDLTALGKIIGGG 273 (428)
T ss_pred -cCCcEEEEEEeCC-CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCcchhhHHhCCCCCeeeechhhcCC
Confidence 3578999999998 9999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred ccchheeEeCHHHHhhhc
Q 005009 695 VIPLAATLATNAVFDSFV 712 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~ 712 (719)
+|+||+++++++++.|.
T Consensus 274 -~Pi~av~~~~~i~~~~~ 290 (428)
T PRK12389 274 -LPIGAYGGRKDIMEQVA 290 (428)
T ss_pred -CceeEEeEHHHHHhhhc
Confidence 79999999999999885
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-51 Score=459.10 Aligned_cols=275 Identities=23% Similarity=0.268 Sum_probs=226.2
Q ss_pred CCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHH
Q 005009 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (719)
Q Consensus 374 ~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~ 453 (719)
..|.++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|++++.+..+..+.+++..+||++|+
T Consensus 14 ~~p~~~~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~a~~~ql~~~~~~~~~~~~~~~~~~la~~l~ 86 (420)
T TIGR00700 14 TLPVFAARAEGA--ILEDVDGN----RLIDFASGIAVLNIGHS-HPRVVDAVRTQVAEFTHTCFMVTPYEGYVALAEKLN 86 (420)
T ss_pred CCCeeEEeeeee--EEEeCCCC----EEEECccCHHhccCCCC-CHHHHHHHHHHHHhccCccccccCChHHHHHHHHHH
Confidence 347788887775 89999999 99999999999999999 999999999999998876544467889999999999
Q ss_pred hccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCC
Q 005009 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (719)
Q Consensus 454 ~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~ 533 (719)
+.+|...+++|+|+||||||||+|||+| |.|++| .+||+|+++|||+|.+++++|+...
T Consensus 87 ~~~p~~~~~~v~f~~sGseA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~~~~~~~~~~-- 145 (420)
T TIGR00700 87 RIAPGSGPKKSVFFNSGAEAVENAVKIA-RSYTGR------------------PGVVAFDHGFHGRTNMTMALTAKVM-- 145 (420)
T ss_pred HhCCCCCCCEEEEeCCcHHHHHHHHHHH-HHhcCC------------------CcEEEECCCcCCCcHHHHHhcCCCc--
Confidence 9887533679999999999999999999 788664 4899999999999999999987421
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
++..+++++ .++..++++|+++++.. .. .......+++.+++.+...
T Consensus 146 -----~~~~~~~~~--------~~~~~~~~~~~~~~~~~--------~~----------~~~~~~~~~~~~~~~~~~~-- 192 (420)
T TIGR00700 146 -----PYKSGFGPF--------APEVYRAPLPYPYRDGL--------LD----------KQLSTDGELAAARAIFVID-- 192 (420)
T ss_pred -----ccccCCCCC--------CCCcEEeCCCccccccc--------cc----------cchhHHHHHHHHHHHHHhh--
Confidence 111222221 12345677776664310 00 0011223456677776411
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCC
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lgg 693 (719)
.++++|||||+||| ||++|+++++++|+++|+++|++||++||+|||+|||||+|++|+++++|+.|||+|+||+++|
T Consensus 193 -~~~~~iAavi~Epi-~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~~~a~~~~~~~pDi~~lsK~l~~ 270 (420)
T TIGR00700 193 -VGANNVAALVIEPV-QGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMFACEHEGPEPDLITTAKSLAD 270 (420)
T ss_pred -cCCCcEEEEEECCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccchhHHHhhcCCCCCEEEeeccccC
Confidence 34689999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchheeEeCHHHHhhhc
Q 005009 694 GVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~ 712 (719)
| +|+|++++++++++.+.
T Consensus 271 G-~pig~v~~~~~i~~~~~ 288 (420)
T TIGR00700 271 G-LPLSGVTGRAEIMDAPA 288 (420)
T ss_pred C-cceEEEEecHHHHhhcC
Confidence 9 79999999999999875
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-51 Score=499.67 Aligned_cols=271 Identities=19% Similarity=0.230 Sum_probs=223.5
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|+++++++|. ||||.||| +||||++|+ .++||+ ||+|++|+++|++++.+.+ .+.++...+||++|++
T Consensus 606 ~p~~i~~g~G~--~l~D~dG~----~ylD~~~g~--~~lGH~-hp~v~~Ai~~q~~~l~~~~--~~~~~~~~~lAe~L~~ 674 (1013)
T PRK06148 606 DPIKFVRGWGV--WLIDNRGR----AYLDCFNNV--CHVGHA-HPRVVAAAARQAARLNTNT--RYLHDAIVAYAERLTA 674 (1013)
T ss_pred CCceEEEeeec--EEEECCCC----EEEEcccCh--hhcCCC-CHHHHHHHHHHHhhcCCcC--CcCCHHHHHHHHHHHH
Confidence 46788887775 89999999 999999985 789999 9999999999999874332 4679999999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
.+|.+ +++|+|+||||||||+|||+| |.||+| .+||+|+++|||+|.+++++|+.. ++.
T Consensus 675 ~~p~~-~~~v~f~nSGsEA~e~AlklA-r~~tGr------------------~~ii~~~~~YHG~t~~a~s~s~~~-~~~ 733 (1013)
T PRK06148 675 TLPDG-LTVAFFVNSGSEANSLALRLA-RAHTGQ------------------RDAIVLDHAYHGTTTELIDLSPYK-FNR 733 (1013)
T ss_pred hCCCC-cCEEEEeCCcHHHHHHHHHHH-HHhcCC------------------CeEEEEcCCccCCCcchhhcCchh-hcc
Confidence 98854 689999999999999999999 888765 489999999999999999998732 222
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
. + ++ + ..++...++.|++|++ +|++.+ .+....|.+.+++.++...
T Consensus 734 ~----~----~~----~---~~~~~~~~~~p~~~~~--------~~~~~~---------~~~~~~~~~~l~~~i~~~~-- 779 (1013)
T PRK06148 734 K----G----GK----G---RPDHVEVAEVPDSYRG--------PERWPD---------AEHGRRFAESVAEQIAAMA-- 779 (1013)
T ss_pred c----C----CC----C---CCCCceEcCCCCcccc--------CCCCCh---------hhhHHHHHHHHHHHHHhhh--
Confidence 1 1 10 0 0123455667776653 244311 1334455666776665321
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc-cccccccCCCcceeeehhccCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPDIACYGKLLTG 693 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~-~~a~e~~gv~PDIvtlgK~Lgg 693 (719)
..+++|||||+||| ||+||+++||++||++|+++|++||++||+|||||||||||+ ||+++++||+|||+|+||+|||
T Consensus 780 ~~~~~iAAvI~EPv-~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~PDivt~gK~lgg 858 (1013)
T PRK06148 780 AKGRGPAFFIAESI-PSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPDIVTMGKPIGN 858 (1013)
T ss_pred ccCCceEEEEEcCC-cCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcCCCcceeeecccccC
Confidence 34578999999998 999999999999999999999999999999999999999997 9999999999999999999999
Q ss_pred CccchheeEeCHHHHhhhcC
Q 005009 694 GVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~~ 713 (719)
| +|+||+++++++++.|..
T Consensus 859 G-~Plgav~~~~ei~~~~~~ 877 (1013)
T PRK06148 859 G-HPMGAVVTTREIADSFDN 877 (1013)
T ss_pred C-cceEEEEEcHHHHhhccC
Confidence 9 799999999999998854
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-51 Score=458.27 Aligned_cols=272 Identities=25% Similarity=0.315 Sum_probs=225.3
Q ss_pred eEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhc
Q 005009 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (719)
Q Consensus 376 p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~ 455 (719)
|.++++++|. |+||.||| +||||++|+|+++|||+ ||+|++|+++|++++.+.....+.++...+|+++|+++
T Consensus 26 ~~~~~~~~G~--~l~d~dG~----~ylD~~~g~~~~~lGh~-~p~v~~a~~~q~~~~~~~~~~~~~~~~~~~la~~L~~~ 98 (433)
T PRK08117 26 NLPVVKGEGC--YYYGVDGK----EYLDFTSGIAVANVGHR-HPKVVQAIKEQADKLMHGPSGVIYYESILKLAEELAEI 98 (433)
T ss_pred CceEEeeeee--EEEeCCCC----EEEECCcchhhccCCCC-CHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHh
Confidence 3678887665 89999999 99999999999999999 99999999999999887654456789999999999999
Q ss_pred cCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCC-CCCCC
Q 005009 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAP-SPYTG 534 (719)
Q Consensus 456 ~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~-~~~~~ 534 (719)
+|.+ .++++|+||||||||+|||+| |.|++| .+||+++++|||+|.+++++++. ..++.
T Consensus 99 ~~~~-~~~v~f~~SGseA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~~~s~~~~~~~~~~ 158 (433)
T PRK08117 99 TPGG-LDCFFFSNSGAEAIEGALKLA-KHVTKR------------------PYIISFTGCFHGRTLGALSVTTSKSKYRK 158 (433)
T ss_pred CCCC-CCEEEEeCcHHHHHHHHHHHH-HHhcCC------------------CeEEEECCCcCCcCHHHHhhcCCCccccc
Confidence 8644 689999999999999999999 778654 58999999999999999998863 22222
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
. +.+ ..+++.++|+|++++++. . .+.+.+...+.+.+++.+++.
T Consensus 159 ~--------~~~--------~~~~~~~~~~~~~~~~~~--------~---------~~~~~~~~~~~~~l~~~~~~~--- 202 (433)
T PRK08117 159 Y--------YQP--------LLGSVYQAPYPYCDRCPK--------G---------EDPEVCFLECLRDLESLFKHQ--- 202 (433)
T ss_pred c--------CCC--------CCCCcEEeCCCccccccc--------c---------CchhHHHHHHHHHHHHHHHhc---
Confidence 1 111 013456777776654321 0 001122334456788777642
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
..++++||||+||| ||++|+++||++||++|+++|++||++||+|||||||||+|++|+++++|++|||+|+||+||||
T Consensus 203 ~~~~~~aavi~Epi-~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~~~~~~~gv~pDi~t~sK~lg~G 281 (433)
T PRK08117 203 VTPEEVAAVIIEPV-LGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFAAQTFGVVPDIMTIAKGIASG 281 (433)
T ss_pred cCCCcEEEEEECCe-eCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccchhHhhcCCCCCEeehhhhccCC
Confidence 23578999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchheeEeCHHHHhhhc
Q 005009 695 VIPLAATLATNAVFDSFV 712 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~ 712 (719)
+|+|++++++++++.+.
T Consensus 282 -~pigav~~~~~i~~~~~ 298 (433)
T PRK08117 282 -LPLSAVVASKELMEQWP 298 (433)
T ss_pred -CcceeEEEcHHHHhhcc
Confidence 79999999999999874
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-51 Score=456.20 Aligned_cols=293 Identities=28% Similarity=0.451 Sum_probs=233.7
Q ss_pred chhhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcc
Q 005009 354 PKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG 433 (719)
Q Consensus 354 ~e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~ 433 (719)
.+.+.+++|+|+..... ...+..+++++| +|+||.||+ +||||++|+|+++|||+ ||+|++|+++|++++.
T Consensus 8 ~~~~~~~~~~~~~~~~~--~~~~~~~~~a~G--~~l~d~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~~~~~~~ 78 (427)
T TIGR00508 8 LAFDQRHIWHPYTSMSS--PLPVYPVESADG--VELTLDDGR----RLIDGMSSWWAAIHGYN-HPRLNAAAQKQIDKMS 78 (427)
T ss_pred HhccccccccCccCccc--cCCCceEEeeee--eEEEeCCCC----EEEEccchHHHhcCCCC-CHHHHHHHHHHHHhcC
Confidence 33445567888766521 123456777666 589999999 99999999999999999 9999999999999988
Q ss_pred cccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEe
Q 005009 434 HVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALK 513 (719)
Q Consensus 434 ~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~ 513 (719)
+..+..+.++...+|+++|++.+|.+ +++|+|++||+||||+|+|+| |.|++.+|. ++|.+||+|+
T Consensus 79 ~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~f~~sGseA~e~AlklA-r~~~~~~~~------------~~r~~il~~~ 144 (427)
T TIGR00508 79 HVMFGGFTHKPAIELCQKLVKMTPNA-LDCVFLADSGSVAVEVALKMA-LQYWQAKGE------------KNRQKFLTIR 144 (427)
T ss_pred CccccccCCHHHHHHHHHHHhhCCCC-CCEEEEeCCcHHHHHHHHHHH-HHHHHhhCC------------CCccEEEEEc
Confidence 76655568999999999999998765 689999999999999999999 677654433 5678999999
Q ss_pred CCcccCccccccccCCCC-CCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccC
Q 005009 514 GSYHGDTLGAMEAQAPSP-YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (719)
Q Consensus 514 ~syHG~t~galslt~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d 592 (719)
++|||+|.+++++++... ++. .| .+ . .++..+++.|... |..
T Consensus 145 ~~yHG~t~~~~s~~~~~~~~~~----~~-~~---~--------~~~~~~~~~p~~~-----------~~~---------- 187 (427)
T TIGR00508 145 SGYHGDTFGAMSVCDPENSMHS----LY-KG---Y--------LPEQIFAPAPQNR-----------FDE---------- 187 (427)
T ss_pred CCcCCccHhhhcccCCcccccc----cc-cc---c--------CCCCeEcCCCCcc-----------ccc----------
Confidence 999999999999987432 211 11 00 0 0112233444221 100
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc
Q 005009 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (719)
Q Consensus 593 ~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~ 672 (719)
.....+.+.+++.+++ .++++||||+|||+||+||+++++++||++|+++|++||++||+|||||||||||++
T Consensus 188 --~~~~~~~~~l~~~l~~-----~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~ 260 (427)
T TIGR00508 188 --EWNEEAITPLAKLMEL-----HSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGKL 260 (427)
T ss_pred --hhHHHHHHHHHHHHHh-----cCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcc
Confidence 0111224567777763 356899999999659999999999999999999999999999999999999999999
Q ss_pred ccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 673 ~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
|+++++|++|||+|+||+|+|||+|++++++++++++.|..
T Consensus 261 ~~~~~~~v~pDi~~~gK~l~gG~~p~~a~~~~~~~~~~~~~ 301 (427)
T TIGR00508 261 FACEHAGVVPDILCVGKALTGGYMTLSATVTTDKVAQTISS 301 (427)
T ss_pred chhhhcCCCCCEEEechhhhcCcccceEEEEcHHHHHHHhc
Confidence 99999999999999999999999999999999999998864
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-51 Score=458.69 Aligned_cols=273 Identities=23% Similarity=0.336 Sum_probs=225.0
Q ss_pred eEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhc
Q 005009 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (719)
Q Consensus 376 p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~ 455 (719)
|.++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|++++.+..+..+.+++..+||++|++.
T Consensus 37 ~~~~~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~L~~~ 109 (451)
T PRK06918 37 PTFAQSANGA--LVTDVDGN----QYIDFAGAIGTINVGHS-HPKVKEALHKQVDQYIHTGFNVMMYEPYIELAEKLAAL 109 (451)
T ss_pred CceEEecccc--EEEeCCCC----EEEEcCCchhhcCCCCC-CHHHHHHHHHHHHhccCccccccccHHHHHHHHHHHHh
Confidence 5678887665 89999999 99999999999999999 99999999999999887654456799999999999999
Q ss_pred cCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCC-CCCC
Q 005009 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYTG 534 (719)
Q Consensus 456 ~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~-~~~~ 534 (719)
+|.+..++|+|+||||||||+|||+| |.|++| .+||+|+++|||+|.+++++++.. .++.
T Consensus 110 ~p~~~~~~v~f~~sGseA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~~ls~~~~~~~~~~ 170 (451)
T PRK06918 110 APGSFDKKVLFLNSGAEAVENAVKIA-RKYTKR------------------QGIISFSRGFHGRTLMTMTMTSKVKPYKF 170 (451)
T ss_pred CCCCCCCEEEEcCCcHHHHHHHHHHH-HHHhCC------------------CcEEEECCCcCccchhhhhhcCCCccccc
Confidence 88543369999999999999999999 888765 489999999999999999998742 2222
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
.++++ .+++.++|+|+.++++. .. ..+...+.+.+.+++.+...
T Consensus 171 --------~~~~~--------~~~~~~~~~~~~~~~~~--------~~---------~~~~~~~~~~~~~~~~~~~~--- 214 (451)
T PRK06918 171 --------GFGPF--------APEVYKAPFPYEYRRPE--------GL---------TEEQYDDFMIEEFKNFFISE--- 214 (451)
T ss_pred --------cCCCC--------CCCcEEcCCCccccccc--------cC---------chHHHHHHHHHHHHHHHHhh---
Confidence 11111 12445667776654321 00 01223334455666655321
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
..+++|||||+||| ||+||+++||++|+++|+++|++||++||+|||+|||||+|++|+++++++.|||+++||+|++|
T Consensus 215 ~~~~~iAavi~EPi-~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~~~a~~~~~v~pDi~t~sK~l~~G 293 (451)
T PRK06918 215 VAPETIAAVVMEPV-QGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYFAIEHFDVVPDLITVSKSLGAG 293 (451)
T ss_pred cCCCceEEEEECcc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCceehhHhcCCCCCEEeeehhhcCC
Confidence 24578999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchheeEeCHHHHhhhc
Q 005009 695 VIPLAATLATNAVFDSFV 712 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~ 712 (719)
+|+|++++++++++.+.
T Consensus 294 -~pig~v~~~~~i~~~~~ 310 (451)
T PRK06918 294 -VPISGVIGRKEIMDESA 310 (451)
T ss_pred -CccEEEEEcHHHHhccC
Confidence 79999999999999875
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-51 Score=454.88 Aligned_cols=267 Identities=23% Similarity=0.316 Sum_probs=222.8
Q ss_pred eEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhc
Q 005009 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (719)
Q Consensus 376 p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~ 455 (719)
|.++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|++++.+..+..+.+++..+|+++|++.
T Consensus 23 p~~~~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~la~~l~~~ 95 (421)
T PRK06777 23 DFYAERAENA--TLWDVEGR----EYIDFAAGIAVLNTGHR-HPKVVAAVRQQLDQFTHTAYQIVPYASYVTLAERINAL 95 (421)
T ss_pred CeeEEeeecC--EEEeCCCC----EEEEcccCHHhhccCCC-CHHHHHHHHHHHhhcccccccccCChHHHHHHHHHHHh
Confidence 6788887776 89999999 99999999999999999 99999999999999887654446789999999999998
Q ss_pred cCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCC-CCCC
Q 005009 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYTG 534 (719)
Q Consensus 456 ~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~-~~~~ 534 (719)
+|.+.+++++|+||||||||+|||+| |+|++| .+||+|+++|||+|.+++++++.. .++.
T Consensus 96 ~p~~~~~~~~f~~sGseA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~~~s~t~~~~~~~~ 156 (421)
T PRK06777 96 APIDGPAKTAFFTTGAEAVENAVKIA-RAYTGR------------------PGVIAFGGAFHGRTLLTMALTGKVAPYKV 156 (421)
T ss_pred CCCCCCceEEEeCCcHHHHHHHHHHH-HHhhCC------------------CeEEEEcCCcCCccHHHHhhcCCCccccc
Confidence 87433679999999999999999999 788754 489999999999999999998742 2222
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
+++++ .++..++++|+.+++ .....+.+.+++.+++.
T Consensus 157 --------~~~~~--------~~~~~~~~~p~~~~~------------------------~~~~~~~~~l~~~~~~~--- 193 (421)
T PRK06777 157 --------GFGPF--------PGSIFHALYPNELHG------------------------VSVEEALSSVERLFKAD--- 193 (421)
T ss_pred --------CCCCC--------CCCcEEcCCCccccC------------------------cCHHHHHHHHHHHHHhc---
Confidence 11211 123445566643311 00122346677777531
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
.+++++||||+||| ||++|+.++|++||++|+++|++||++||+|||||||||+|++|+++++++.|||+|+||++|||
T Consensus 194 ~~~~~iaavi~Epv-~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~pDiv~~sK~l~~G 272 (421)
T PRK06777 194 IAPDQVAAILLEPI-QGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYDVKPDLITMAKSLGGG 272 (421)
T ss_pred cCCCceEEEEECCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCchhhhhhcCCCCCEEeeehhhcCC
Confidence 24678999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchheeEeCHHHHhhhcC
Q 005009 695 VIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~~ 713 (719)
+|+|++++++++++.+..
T Consensus 273 -~pigav~~~~~i~~~~~~ 290 (421)
T PRK06777 273 -MPISAVVGRAEVMDAPAP 290 (421)
T ss_pred -CceEEEEEcHHHHhccCC
Confidence 799999999999998753
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-51 Score=455.13 Aligned_cols=265 Identities=23% Similarity=0.304 Sum_probs=213.6
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|+++..+.....+.+++..+|+|+|++
T Consensus 17 ~p~~~~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~ 89 (412)
T TIGR02407 17 FPTVFEKAKGS--TLWDEDGK----EYIDFFAGAGALNYGHN-NPKLKQALIDYLADDGIIHSLDMATEAKREFLETFNE 89 (412)
T ss_pred CCceEEecccC--EEEeCCCC----EEEEcccchhhccCCCC-CHHHHHHHHHHHhhccceeccccCcHHHHHHHHHHHH
Confidence 46678887665 89999999 99999999999999999 9999999999999876654444568999999999999
Q ss_pred cc--CCCCCCeEEE-eCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCC
Q 005009 455 GV--GKGWASRAYF-SDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP 531 (719)
Q Consensus 455 ~~--~~~~~~rv~f-~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~ 531 (719)
.. |.+...+++| +||||||||+|||+| |.|++| .+||+|+++|||+|.+++++++...
T Consensus 90 ~~~~~~~~~~~~~f~~~sGseA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~als~~~~~~ 150 (412)
T TIGR02407 90 IILKPRGLDYKVQFPGPTGTNAVESALKLA-RKVTGR------------------SNVVSFTNAFHGMTLGSLSVTGNRF 150 (412)
T ss_pred hccCccCCCceEEEeCCCchHHHHHHHHHH-hhhcCC------------------CeEEEECCCcCCchHHHHHhcCCcc
Confidence 74 3222236666 599999999999999 777654 5899999999999999999998654
Q ss_pred CCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcC
Q 005009 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611 (719)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~ 611 (719)
++.. + .++. ++..++|+|+.+. + ...+.+.+++.+++.
T Consensus 151 ~~~~--------~----~~~~----~~~~~~p~~~~~~----------------------~----~~~~~~~l~~~~~~~ 188 (412)
T TIGR02407 151 KRQG--------A----GVPL----SNVSRMPYDGYLG----------------------G----DVDTIAYFEKLLEDS 188 (412)
T ss_pred cccC--------C----CCCC----CCeEECCCCCccc----------------------c----chhHHHHHHHHHHhc
Confidence 4332 1 1111 1234445442110 0 012346677777642
Q ss_pred CCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhcc
Q 005009 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLL 691 (719)
Q Consensus 612 ~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~L 691 (719)
. .+.+++||||+||| ||++|++++|++||++|+++|++||++||+|||||||||||++|+++++++.|||+|+||+|
T Consensus 189 ~--~~~~~~aavi~Epi-~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v~PDi~~~~K~l 265 (412)
T TIGR02407 189 S--SGVDLPAAVILETV-QGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGIEPDIVCLSKSI 265 (412)
T ss_pred c--CCCCceEEEEeccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHhcccCCCCCEEEechhc
Confidence 1 12368999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CccchheeEeCHHHHhhhc
Q 005009 692 TG-GVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 692 gg-G~~Plsavl~~~~i~~~~~ 712 (719)
|| | +|+|++++++++ +.+.
T Consensus 266 g~~G-~pigav~~~~~~-~~~~ 285 (412)
T TIGR02407 266 SGYG-LPLALTLIKPEL-DVWK 285 (412)
T ss_pred cCCc-cceeEEEEchhh-hccC
Confidence 99 8 799999999987 6553
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-51 Score=455.21 Aligned_cols=264 Identities=22% Similarity=0.290 Sum_probs=214.0
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. ||||.||| +||||++|+|++++||+ ||+|.+|+++|++++.+.....+.+++..+|+++|++
T Consensus 21 ~p~~~~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~ 93 (425)
T PRK09264 21 FPVVFDKAKGS--WLYDEDGK----EYIDFFAGAGALNYGHN-NPVLKQALIDYLQRDGITHGLDMHTTAKREFLETFEE 93 (425)
T ss_pred CCccEEeeecC--EEEeCCCC----EeeecccchhhccCCCC-CHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHH
Confidence 36678887765 89999999 99999999999999999 9999999999999876655444568999999999999
Q ss_pred cc--CCCCCCeEEEe-CChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCC
Q 005009 455 GV--GKGWASRAYFS-DNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP 531 (719)
Q Consensus 455 ~~--~~~~~~rv~f~-~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~ 531 (719)
.+ |.+...+++|+ ||||||||+|||+| |.|++| .+||+|+++|||+|.+++++|+...
T Consensus 94 ~~~~~~~~~~~~~f~~~sGseA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~~ls~~~~~~ 154 (425)
T PRK09264 94 TILKPRGLDYKVQFTGPTGTNAVEAALKLA-RKVTGR------------------TNIVAFTNGFHGMTLGSLAVTGNSH 154 (425)
T ss_pred hhcCCcCCCceEEEeCCCHHHHHHHHHHHH-HHhcCC------------------CeEEEECCccCCccHHHHHhcCCcc
Confidence 74 32222367664 89999999999999 788654 5899999999999999999998654
Q ss_pred CCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcC
Q 005009 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611 (719)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~ 611 (719)
++.. + .++. ++..++|+|+.+++ + ....+.+++.|++.
T Consensus 155 ~~~~--------~----~~~~----~~~~~~p~~~~~~~------------------------~--~~~~~~l~~~l~~~ 192 (425)
T PRK09264 155 KRQG--------A----GVPL----NNVTRMPYDGYFGG------------------------D--VDTLAYLEKLLEDS 192 (425)
T ss_pred cccC--------C----CCCC----CCeEEeCCCCcccc------------------------c--hhHHHHHHHHHHhc
Confidence 3321 1 1111 13455666542210 0 01245677777642
Q ss_pred CCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhcc
Q 005009 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLL 691 (719)
Q Consensus 612 ~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~L 691 (719)
. .+.+++||||+||| ||+||++++|++||++|+++|++||++||+|||||||||||++|+++++++.|||+|+||+|
T Consensus 193 ~--~~~~~~aavi~Epv-~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~~~~~~~v~PDi~t~~K~l 269 (425)
T PRK09264 193 S--SGVDLPAAVIVETV-QGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSFERAGITPDIVTLSKSI 269 (425)
T ss_pred c--CCCCceEEEEEecc-cCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHHHHhhcCCCCCEEEecccc
Confidence 1 12368999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CccchheeEeCHHHHhhh
Q 005009 692 TG-GVIPLAATLATNAVFDSF 711 (719)
Q Consensus 692 gg-G~~Plsavl~~~~i~~~~ 711 (719)
|+ | +|+|++++++++. .+
T Consensus 270 ~~~G-~pigav~~~~~i~-~~ 288 (425)
T PRK09264 270 SGYG-LPMALVLIKPELD-VW 288 (425)
T ss_pred CCCc-cceEEEEEchhhh-cc
Confidence 99 7 8999999999984 44
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-50 Score=452.90 Aligned_cols=269 Identities=23% Similarity=0.291 Sum_probs=223.5
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. ||||.||| +|||+++|+|++++||+ ||+|++|+++|++++.+..+..+.+++..+|+++|++
T Consensus 22 ~~~~~~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~la~~l~~ 94 (421)
T PRK09792 22 CNFFAQSAENA--TLKDVEGN----EYIDFAAGIAVLNTGHR-HPDLVAAVEQQLQQFTHTAYQIVPYESYVTLAEKINA 94 (421)
T ss_pred CCeeEEecccc--EEEeCCCC----EEEEccCchhhhcCCCC-CHHHHHHHHHHHHhccCcccCccCCHHHHHHHHHHHH
Confidence 35678887775 89999999 99999999999999999 9999999999999988765555679999999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
.+|....++++|+||||||||+|||+| |.+++| .+||+|+++|||+|.+++++++...
T Consensus 95 ~~p~~~~~~~~f~~sGseA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~~~s~~~~~~--- 152 (421)
T PRK09792 95 LAPVSGQAKTAFFTTGAEAVENAVKIA-RAHTGR------------------PGVIAFSGGFHGRTYMTMALTGKVA--- 152 (421)
T ss_pred hCCCCCCceEEEeCChHHHHHHHHHHH-HHhcCC------------------CeEEEECCCcCCccHHHHhhcCCCc---
Confidence 887433579999999999999999999 777654 4899999999999999999987421
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
+|..+++++ .+++.++|+|+.+++ .....+++.+++.+++.
T Consensus 153 ----~~~~~~~~~--------~~~~~~v~~p~~~~~------------------------~~~~~~~~~l~~~~~~~--- 193 (421)
T PRK09792 153 ----PYKIGFGPF--------PGSVYHVPYPSDLHG------------------------ISTQDSLDAIERLFKSD--- 193 (421)
T ss_pred ----ccccCCCCC--------CCCcEEcCCCccccc------------------------ccHHHHHHHHHHHHHhc---
Confidence 122222221 123456666643311 00123456778777631
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
..+++|||||+||+ ||.+|+.++|++|+++|+++|++||++||+|||+|||||+|++|+++++|++|||+|+||+||||
T Consensus 194 ~~~~~iaavi~EPv-q~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pDi~t~gK~l~~G 272 (421)
T PRK09792 194 IEAKQVAAIIFEPV-QGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYADKPDLMTMAKSLAGG 272 (421)
T ss_pred cCCCceEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHhcCCCCcEEEeehhhcCC
Confidence 13578999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchheeEeCHHHHhhhcC
Q 005009 695 VIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~~ 713 (719)
+|+|++++++++++.+..
T Consensus 273 -~pigav~~~~~i~~~~~~ 290 (421)
T PRK09792 273 -MPLSGVVGNANIMDAPAP 290 (421)
T ss_pred -CceEEEEEcHHHHhccCC
Confidence 799999999999998753
|
|
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-50 Score=439.03 Aligned_cols=281 Identities=22% Similarity=0.313 Sum_probs=228.9
Q ss_pred hcccchhhCCCc----cccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHH
Q 005009 350 LCDMPKRAGELF----WWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDM 425 (719)
Q Consensus 350 l~~L~e~~~~~~----~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av 425 (719)
++.+.+++.+.+ +.|....+.++ ..|.++++++|. |+||+||| +|||++.+|+...|||+ ||.|++|+
T Consensus 7 S~~l~~~A~~~~pGGvnspvra~~~v~-~~P~fi~~g~Ga--~l~DvDGn----~YIDy~~~~Gp~ilGH~-~p~V~~Av 78 (432)
T COG0001 7 SEALFERAKKVIPGGVNSPVRAFKSVG-GYPIFIERGKGA--YLTDVDGN----EYIDYVLGWGPLILGHA-HPAVVEAV 78 (432)
T ss_pred hHHHHHHHhhhCCCCCCccccccCCCC-CCCeeEEeccCC--eEEeCCCC----EeeehhccCcccccCCC-CHHHHHHH
Confidence 344555555554 44555555443 478999998887 79999999 99999999999999999 99999999
Q ss_pred HHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCc
Q 005009 426 GYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCI 505 (719)
Q Consensus 426 ~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~ 505 (719)
++|+++.... +..++...++||.|++..|. .++|.|+|||+||+..|||+| |.||+|
T Consensus 79 ~~~l~~G~~f---g~Pte~Ei~~Aell~~~~p~--~e~vrfvnSGTEAtmsAiRlA-Ra~TgR----------------- 135 (432)
T COG0001 79 QEQLERGLSF---GAPTELEVELAELLIERVPS--IEKVRFVNSGTEATMSAIRLA-RAYTGR----------------- 135 (432)
T ss_pred HHHHHhcCCC---CCCCHHHHHHHHHHHHhcCc--ccEEEEecchhHHHHHHHHHH-HHhhCC-----------------
Confidence 9999996543 35789999999999999985 689999999999999999999 899876
Q ss_pred ceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccc
Q 005009 506 ELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDE 585 (719)
Q Consensus 506 r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~ 585 (719)
.|||.|+|+|||+....+--.++..-. +..|.. ...|......+. -++|||.
T Consensus 136 -~kIikF~G~YHG~~D~~lv~agsg~~t--------------~g~p~s--------~Gvp~~~a~~ti---~~~yND~-- 187 (432)
T COG0001 136 -DKIIKFEGCYHGHSDSLLVKAGSGAAT--------------LGSPSS--------PGVPADVAKHTL---VLPYNDL-- 187 (432)
T ss_pred -CeEEEEcCCCCCCccHHHhhcCcCccc--------------CCCCCC--------CCCChhhhccEE---EecCCCH--
Confidence 499999999999988776644311100 000110 011222211111 2468984
Q ss_pred hhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccC
Q 005009 586 IFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG 665 (719)
Q Consensus 586 ~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTG 665 (719)
+.+++++++ .+++|||||+||| +|..|+++|.++|+++||+||++||++||+|||+||
T Consensus 188 ----------------~al~~~~~~-----~g~~IAaVIvEPv-~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTG 245 (432)
T COG0001 188 ----------------EALEEAFEE-----YGDDIAAVIVEPV-AGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITG 245 (432)
T ss_pred ----------------HHHHHHHHH-----cCCcEEEEEeccc-cCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhh
Confidence 678888884 5789999999998 999999999999999999999999999999999999
Q ss_pred ccccCccccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 666 FWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 666 fGRtG~~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
| |.+...++++|||+||+.||||.|||| +|+||+.++++||+.+..
T Consensus 246 F-R~~~gGaq~~~gi~PDlttlGKiIGGG-lP~ga~gGr~eiM~~~~p 291 (432)
T COG0001 246 F-RVALGGAQGYYGVEPDLTTLGKIIGGG-LPIGAFGGRAEIMEQLAP 291 (432)
T ss_pred c-ccCCcccccccCcCcchhhhhhhhcCC-cceeeeccHHHHHhhhCC
Confidence 9 999999999999999999999999999 799999999999997754
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-50 Score=454.27 Aligned_cols=254 Identities=21% Similarity=0.288 Sum_probs=208.7
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. |+||.||| +|||+++|+|++++||+ ||+|.+|+++|+++..+. ...++...+|||+|++
T Consensus 81 ~p~~~~~a~G~--~l~D~dG~----~yiD~~~g~g~~~lGh~-~p~v~~av~~ql~~~~~~---~~~~~~~~~lAe~l~~ 150 (474)
T PLN02482 81 QPIVFDRVKGS--YAWDVDGN----EYIDYVGSWGPAIIGHA-DDEVLAALAETMKKGTSF---GAPCLLENVLAEMVID 150 (474)
T ss_pred CCeeEEEeeeC--EEEECCCC----EEEEecccccccccCCC-CHHHHHHHHHHHhhCCCC---CCCCHHHHHHHHHHHH
Confidence 47888887776 89999999 99999999999999999 999999999999987653 3568999999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccc--cCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA--QAPSPY 532 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galsl--t~~~~~ 532 (719)
.+|. +++|+|+||||||||.|||+| |+|++| .+||+|+++|||++...+.. ++...+
T Consensus 151 ~~p~--~~~v~f~~SGsEA~e~AlklA-R~~tgr------------------~~Ii~~~g~YHG~~~~~~~~~~~~~~~~ 209 (474)
T PLN02482 151 AVPS--VEMVRFVNSGTEACMGVLRLA-RAYTGR------------------EKIIKFEGCYHGHADSFLVKAGSGVATL 209 (474)
T ss_pred hCCC--CCEEEEeCChHHHHHHHHHHH-HHhcCC------------------CEEEEECCccCCCcchhhhhcCCCcccc
Confidence 9874 689999999999999999999 888765 48999999999987554333 321111
Q ss_pred CCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCC
Q 005009 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (719)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~ 612 (719)
.. ++. + +......++.+. ++|||. +.+++.|++
T Consensus 210 ~~----~~~---------~------g~~~~~~~~~~~--------~~~nd~------------------~~l~~~l~~-- 242 (474)
T PLN02482 210 GL----PDS---------P------GVPKAATSATLT--------APYNDL------------------EAVKKLFEA-- 242 (474)
T ss_pred CC----CCC---------C------CCCCCCCCCeEE--------ecCCCh------------------HHHHHHHHh--
Confidence 00 110 0 000000111110 235653 456777763
Q ss_pred CCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccC
Q 005009 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692 (719)
Q Consensus 613 ~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lg 692 (719)
+++++||||+||| ||++|+++|+++||++|+++|++||++||+||||||| |+|.+|+++++|++|||+||||+||
T Consensus 243 ---~~~~iAavI~Epv-~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGf-R~g~~ga~~~~gv~PDi~t~gK~lg 317 (474)
T PLN02482 243 ---NKGEIAAVILEPV-VGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGF-RIAYGGAQEYFGITPDLTTLGKVIG 317 (474)
T ss_pred ---CCCceEEEEECCC-CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCe-ecCcchHhHHhCCCCCEEEecchhh
Confidence 4678999999998 9999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred CCccchheeEeCHHHHhhhc
Q 005009 693 GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 693 gG~~Plsavl~~~~i~~~~~ 712 (719)
|| +|+|++++++++++.+.
T Consensus 318 gG-~Pigav~g~~ei~~~~~ 336 (474)
T PLN02482 318 GG-LPVGAYGGRREIMEMVA 336 (474)
T ss_pred CC-CceEEEEEcHHHHHhhc
Confidence 99 79999999999999885
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-50 Score=450.41 Aligned_cols=256 Identities=23% Similarity=0.342 Sum_probs=210.6
Q ss_pred CCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHH
Q 005009 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (719)
Q Consensus 374 ~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~ 453 (719)
..|+++++++|. ||||.||| +|||+++|+|++++||+ ||+|++|+++|+++.... .+.+++..+|+++|+
T Consensus 34 ~~p~~i~~a~G~--~l~D~dG~----~yiD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~---~~~~~~~~~la~~L~ 103 (433)
T PRK00615 34 ITPPIVSSASGD--IFIDSLGK----TFIDFCGSWGSLIHGHS-HPKICDAIQQGAERGTSY---GLTSEQEILFAEELF 103 (433)
T ss_pred CCCceEEEeeeC--EEEECCCC----EEEEcccchhccccCCC-CHHHHHHHHHHHHhCCCC---CCCCHHHHHHHHHHH
Confidence 357788887776 89999999 99999999999999999 999999999999986532 356899999999999
Q ss_pred hccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCc---cccccccCCC
Q 005009 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT---LGAMEAQAPS 530 (719)
Q Consensus 454 ~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t---~galslt~~~ 530 (719)
+.+|.+ .++|+|+||||||||+|||+| |.|++| .+||+|+++|||+| .+++++++..
T Consensus 104 ~~~~~~-~~~v~f~~SGsEA~e~AiklA-r~~tgr------------------~~ii~~~~~yHG~td~~~~~~~~~~~~ 163 (433)
T PRK00615 104 SYLGLE-DHKIRFVSSGTEATMTAVRLA-RGITGR------------------SIIIKFLGCYHGHADTLLQGISFSETS 163 (433)
T ss_pred HhCCCC-cCEEEEeCchHHHHHHHHHHH-HHhhCC------------------CEEEEEcCccCCCCcccCcccccCCCC
Confidence 988754 479999999999999999999 888765 48999999999998 7777776532
Q ss_pred CCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhc
Q 005009 531 PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQ 610 (719)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~ 610 (719)
..... .. +.++. +..++. .++||| .+.+++.|++
T Consensus 164 ~~~~~------~~----~~~~~------------~~~~~~------~~~~~d------------------~~~l~~~l~~ 197 (433)
T PRK00615 164 LDTLT------HL----VDTDL------------AHPLTL------SLPYND------------------FQIFQTVMNS 197 (433)
T ss_pred cCcCC------CC----CCCCC------------CCCCeE------eCCCCC------------------HHHHHHHHHh
Confidence 11100 00 00000 000000 012444 2456777763
Q ss_pred CCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhc
Q 005009 611 NPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKL 690 (719)
Q Consensus 611 ~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~ 690 (719)
.++++||||+||| ||++|+++|+++||++|+++|++||++||+||||||| |||.+|+++++|++|||+|+||+
T Consensus 198 -----~~~~~aavI~Epv-~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~-R~G~~ga~~~~gv~PDi~~~gK~ 270 (433)
T PRK00615 198 -----LGHRVAGVIFEPI-CANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVAQGGAAAIYHVKPDITVYGKI 270 (433)
T ss_pred -----cCCceEEEEECCC-CCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccc-cccHhHHHHhcCCCCCeEEEccc
Confidence 2478999999998 9999999999999999999999999999999999999 99999999999999999999999
Q ss_pred cCCCccchheeEeCHHHHhhhcC
Q 005009 691 LTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 691 LggG~~Plsavl~~~~i~~~~~~ 713 (719)
|||| +|+|++++++++++.+..
T Consensus 271 lggG-~p~~av~~~~~i~~~~~~ 292 (433)
T PRK00615 271 LGGG-LPAAAVVAHKSIMDHLAP 292 (433)
T ss_pred ccCC-cceeeeeecHHHHhhhcC
Confidence 9999 799999999999998853
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-50 Score=447.81 Aligned_cols=273 Identities=22% Similarity=0.266 Sum_probs=226.3
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|+++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|++++.+.+...+.+++..+||++|++
T Consensus 23 ~p~~~~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~la~~L~~ 95 (443)
T PRK08360 23 YPLVPVKAENA--KVWDIEGN----EYIDFLSDAAVQNVGHN-NPRVVKAIKEQTDKLIHYTPIYGFPVEPLLLAEKLIE 95 (443)
T ss_pred CCceEEeccee--EEEECCCC----EEEEccccHhhcccCCC-CHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHH
Confidence 36788876664 89999999 99999999999999999 9999999999999988776544568999999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCC-CCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYT 533 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~-~~~ 533 (719)
.+|.+ +++|+|+||||||||+|||+| |.|++| .+||++.++|||+|.+++++++.. .++
T Consensus 96 ~~p~~-~~~v~f~~sGsEAve~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~~a~s~~~~~~~~~ 155 (443)
T PRK08360 96 IAPGD-NPKVSFGLSGSDANDGAIKFA-RAYTKR------------------RKILSYLRSYYGSTYGAMSLTGLDFPVR 155 (443)
T ss_pred hCCCC-CCEEEEcCCHHHHHHHHHHHH-HHhcCC------------------CeEEEEeCCcCCcCHHHHHhcCCCcccc
Confidence 98754 579999999999999999999 788754 489999999999999999998732 122
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
. .+ .+ .++..++++|+.++.. +.. +..++...+.+++++.+++.
T Consensus 156 ~--------~~----~~-----~~~~~~~~~~~~~~~~--------~~~---------~~~~~~~~~~~~~~~~l~~~-- 199 (443)
T PRK08360 156 A--------LV----GE-----LSDVHYIPYPDCYRCP--------FGK---------EPGSCKMECVEYIKEKFEGE-- 199 (443)
T ss_pred c--------CC----CC-----CCCcEEEeCCcccccc--------ccC---------chhhhHHHHHHHHHHHHHhc--
Confidence 1 11 11 1234567777655421 110 11233334566777777631
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCC
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lgg 693 (719)
..+++|||||+||+ ||.+|++++|++|+++|+++|++||++||+|||||||||+|++|+++++|++|||+|+||++|+
T Consensus 200 -~~~~~iAAvi~eP~-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~~a~~~~~~~pDiitlsK~l~~ 277 (443)
T PRK08360 200 -VYAEGVAALFAEPI-QGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFAIEHFGVEPDIITLGKPLGG 277 (443)
T ss_pred -cCCCCeEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccchhhhhcCCCCCEEEecccccC
Confidence 23578999999997 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchheeEeCHHHHhhhcC
Q 005009 694 GVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~~ 713 (719)
| +|+|++++++++++.+..
T Consensus 278 G-~pigav~~~~~i~~~~~~ 296 (443)
T PRK08360 278 G-LPISATIGRAEIMDSLPP 296 (443)
T ss_pred C-ceeEEEEEcHHHHhhhcC
Confidence 9 799999999999998853
|
|
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-50 Score=448.96 Aligned_cols=270 Identities=19% Similarity=0.248 Sum_probs=205.8
Q ss_pred EEeecCCceEEEeC-CCCcccceeeeccccccccCCCCCCCHHHHH--HHHHhhhhccc--ccCCCCCChHHHHHHHHHH
Q 005009 379 IDSRCGENFSVYQD-QKNKFIGQQFDACASWWTQGPDATLQIELAR--DMGYTAARFGH--VMFPENVYEPALECAELLL 453 (719)
Q Consensus 379 i~~~~G~g~~l~D~-dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~--Av~~q~~~~~~--~~~~~~~~~~~~~Lae~L~ 453 (719)
+.+++| +|+||. ||| +|||+++|+|++++||+ ||+|++ |+++|++++.+ .....+.+++..+|+++|+
T Consensus 30 i~~a~G--~~l~D~~dG~----~ylD~~~g~~~~~lGh~-~p~v~~~~ai~~ql~~l~~~~~~~~~~~~~~~~~la~~l~ 102 (443)
T PRK08297 30 LERSQG--SYLVDARTGR----RYLDMFTFFASSALGMN-HPALADDPEFRAELGRAALNKPSNSDVYTVEMARFVDTFA 102 (443)
T ss_pred EEeccC--CEEEECCCCC----EeeecccCHhhhcCCCC-ChHHhhHHHHHHHHHHhhhhccccCCcCCHHHHHHHHHHH
Confidence 555555 589995 999 99999999999999999 999999 99999998763 2223467899999999999
Q ss_pred hcc-CCCCCCeEEEeCChHHHHHHHHHHHHHHhhcc----ccccccccCCCccccCcceEEEEEeCCcccCccccccccC
Q 005009 454 QGV-GKGWASRAYFSDNGSTAIEIALKMAFRKFSFD----HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQA 528 (719)
Q Consensus 454 ~~~-~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~----~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~ 528 (719)
+.. |.+ +++|+|+||||||||+|||+| |+|+.+ +|. ..++|.+||+|+++|||+|.+++++++
T Consensus 103 ~~~~p~~-~~~v~f~~SGsEAve~AlKlA-r~~~~~~~~~~g~----------~~~~r~kii~~~~~yHG~t~~als~~~ 170 (443)
T PRK08297 103 RVLGDPE-LPHLFFVDGGALAVENALKVA-FDWKSRKNEARGI----------DPALGTKVLHLRGAFHGRSGYTLSLTN 170 (443)
T ss_pred hhcCCCC-CCEEEEeCchHHHHHHHHHHH-HHHhhccccccCC----------CCCCCceEEEECCCcCCcchhhhhhcC
Confidence 987 433 789999999999999999999 777632 121 002478999999999999999999997
Q ss_pred CCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHH
Q 005009 529 PSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNL 608 (719)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l 608 (719)
...++.. ++ +..+. .+++.|... . ++.+.+ ..+...+...+++.+++.|
T Consensus 171 ~~~~~~~----~~----~~~~~---------~~~~~~~~~-~--------~~~~~~-----~~~~~~~~~~~~~~~~~~i 219 (443)
T PRK08297 171 TDPRKTA----RF----PKFDW---------PRIDNPKLR-F--------PLPGED-----LEEVEALEAEALAQARAAF 219 (443)
T ss_pred Ccccccc----cC----CCCCc---------cccCCCCCC-C--------CCcccc-----cchhhHHHHHHHHHHHHHH
Confidence 5332211 00 00000 112222110 0 000000 0001223334567788888
Q ss_pred hcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeeh
Q 005009 609 LQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG 688 (719)
Q Consensus 609 ~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg 688 (719)
++ ++++|||||+||| ||+||+++||++||++|+++|++||++||+|||||||||||+||+++++|++|||+|+|
T Consensus 220 ~~-----~~~~iAavI~EPi-~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~g 293 (443)
T PRK08297 220 ER-----HPHDIACFIAEPI-QGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVRPDIVAFG 293 (443)
T ss_pred Hh-----CCCcEEEEEEccc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccchHHHHHhcCCCCCEEEec
Confidence 73 4689999999998 99999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCccchheeEeCHHHHh
Q 005009 689 KLLTGGVIPLAATLATNAVFD 709 (719)
Q Consensus 689 K~LggG~~Plsavl~~~~i~~ 709 (719)
|+| |++++++++++++
T Consensus 294 K~l-----~~~a~l~~~~i~~ 309 (443)
T PRK08297 294 KKT-----QVCGIMAGRRVDE 309 (443)
T ss_pred ccc-----cccceecchHHHH
Confidence 997 4556777777654
|
|
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-50 Score=448.33 Aligned_cols=271 Identities=19% Similarity=0.241 Sum_probs=203.3
Q ss_pred eEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHh--hhhcccccCCCCCChHHHHHHHHHH
Q 005009 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYT--AARFGHVMFPENVYEPALECAELLL 453 (719)
Q Consensus 376 p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q--~~~~~~~~~~~~~~~~~~~Lae~L~ 453 (719)
|+++++++|. ||||.||| +||||++|+|++++||+ ||+|++|+++| ...+.+.. .+.+++..+|+++|.
T Consensus 41 p~~~~~a~G~--~l~D~dG~----~ylD~~sg~~~~~lGh~-~p~i~~Ai~~q~~~~~l~~~~--~~~~~~~~~la~~l~ 111 (464)
T TIGR00699 41 LADYEKSRGN--YLVDVDGN----RLLDLYSQISSIPIGYN-NPALLKAAQSPEMATTLINRP--ALGNFPSKDWAKILK 111 (464)
T ss_pred ceEEEecccC--EEEeCCCC----EEEEccCCHhhhcCCCC-CHHHHHHHHHHHHHHhhcccc--cCCcHHHHHHHHHHH
Confidence 6677777665 89999999 99999999999999999 99999999995 44444432 467888999999985
Q ss_pred h----ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccc--cccCCC-------ccccCcceEEEEEeCCcccCc
Q 005009 454 Q----GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLV--DFLGKD-------TTEKCIELKVLALKGSYHGDT 520 (719)
Q Consensus 454 ~----~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~--~~~~~~-------~~~~~~r~kII~~~~syHG~t 520 (719)
+ .+|.+ +++|+|+||||||||+|||+| |.|++.+|... .+.+++ ++++..|.+||+|+++|||+|
T Consensus 112 ~~l~~~~p~~-~~~v~f~~SGsEAvE~AlKlA-r~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t 189 (464)
T TIGR00699 112 EGILKVAPKG-QDQVWTGMSGSDANELAFKAA-FMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRL 189 (464)
T ss_pred HhHHhhCCCC-cCEEEEeCCcHHHHHHHHHHH-HHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCcc
Confidence 4 66644 689999999999999999999 77765322100 000000 011123569999999999999
Q ss_pred cccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHH
Q 005009 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (719)
Q Consensus 521 ~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~ 600 (719)
.+++++++...++.. + +|. .+..++|+|+ ++++. ... ..+...+...+
T Consensus 190 ~~als~t~~~~~~~~---------~----~~~----~~~~~~p~p~-~~~~~--------~~~------~~~~~~~~~~~ 237 (464)
T TIGR00699 190 FGSLSTTRSKPIHKL---------D----IPA----FDWPQAPFPS-LKYPL--------EEH------VKENAKEEQRC 237 (464)
T ss_pred HHHHHhcCCcccccc---------C----CCC----CCceecCCCC-ccccc--------ccc------cccchhHHHHH
Confidence 999999975432221 0 111 1224555554 22110 000 00112234456
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC
Q 005009 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (719)
Q Consensus 601 ~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv 680 (719)
++.++++|++ .+++|||||+||| ||++|+++||++||++|+++|++||++||+|||||||||||+||+++++||
T Consensus 238 l~~l~~~l~~-----~~~~iAAvI~EPv-~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~fa~e~~gv 311 (464)
T TIGR00699 238 LEEVEDLIKK-----WHKPVAAIIVEPI-QSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNL 311 (464)
T ss_pred HHHHHHHHHh-----cCCcEEEEEEeCC-CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchhHHHhcCC
Confidence 7788888873 3568999999998 999999999999999999999999999999999999999999999999999
Q ss_pred C--cceeeehhccC-CCc
Q 005009 681 V--PDIACYGKLLT-GGV 695 (719)
Q Consensus 681 ~--PDIvtlgK~Lg-gG~ 695 (719)
+ |||+|+||+|| |||
T Consensus 312 ~~~PDi~t~gK~lg~gG~ 329 (464)
T TIGR00699 312 DDPPDMVTFSKKFQTAGY 329 (464)
T ss_pred CCCCCEEEehhhhccCCc
Confidence 7 99999999995 685
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-50 Score=437.67 Aligned_cols=244 Identities=23% Similarity=0.265 Sum_probs=207.9
Q ss_pred CCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHH
Q 005009 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (719)
Q Consensus 374 ~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~ 453 (719)
..|.++++++|. |+||.||| +|||+++|+|+.++||+ ||+|++|+++|++++.+.. ..+.+++..+|+++|+
T Consensus 5 ~~~~~~~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~ql~~~~~~~-~~~~~~~~~~la~~l~ 76 (364)
T PRK04013 5 RKRLRLVRGEGI--YVWDSQGR----RYLDLIAGIGVNVLGHN-HPEWVEEMSEQLEKLVVAG-PMFEHEEKEEMLEELS 76 (364)
T ss_pred CCCccEEEeecC--EEEECCCC----EEEEcccChhhccCCCC-CHHHHHHHHHHHHhcCCcc-CCcCCHHHHHHHHHHH
Confidence 456778887776 89999999 99999999999999999 9999999999999987654 3577999999999999
Q ss_pred hccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCC
Q 005009 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (719)
Q Consensus 454 ~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~ 533 (719)
+..+ .++++|+||||||||+|||+| |.+++| .+||+++++|||+|.+++++++.+.++
T Consensus 77 ~~~~---~~~v~~~~SGseA~e~Alkla-r~~~gr------------------~~Ii~~~~syHG~t~~~ls~~~~~~~~ 134 (364)
T PRK04013 77 KWVN---YEYVYMGNSGTEAVEAALKFA-RLYTGR------------------KEIIAMTNAFHGRTMGALSATWKPKYR 134 (364)
T ss_pred hhcC---CCEEEEeCchHHHHHHHHHHH-HHHhCC------------------CEEEEECCccccCchhhccCCCCcccc
Confidence 9875 579999999999999999999 777654 489999999999999999999865444
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
.. +.+.+ +++.++| |+|. +.+++.+.
T Consensus 135 ~~--------~~p~~--------~~~~~~~----------------~~d~------------------~~l~~~i~---- 160 (364)
T PRK04013 135 ED--------FEPLV--------PGFKHIP----------------FNDV------------------EAAKEAIT---- 160 (364)
T ss_pred cC--------CCCCC--------CCcEEec----------------CCCH------------------HHHHHHhc----
Confidence 32 11110 1122222 3431 33555553
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCC
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lgg 693 (719)
+++||||+||+ ||+||++++|++||++|+++|++||++||+||||||| |||++|+++++|++|||+|+||+|||
T Consensus 161 ----~~~aAvivEpi-~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~-RtG~~~a~~~~gv~PDiv~~gK~lgg 234 (364)
T PRK04013 161 ----KETAAVIFEPI-QGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGKFLAIEHYKVEPDIVTMGKGIGN 234 (364)
T ss_pred ----CCcEEEEEcCC-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcC-CCCchhHHHhcCCCCCEEEecccccC
Confidence 47999999998 9999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred CccchheeEeCHHHH
Q 005009 694 GVIPLAATLATNAVF 708 (719)
Q Consensus 694 G~~Plsavl~~~~i~ 708 (719)
| +|+||++.++++.
T Consensus 235 G-~P~~a~~~~~~~~ 248 (364)
T PRK04013 235 G-VPVSLTLTNFDVE 248 (364)
T ss_pred C-ceeEEEEeccccc
Confidence 9 7999999998863
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-49 Score=446.28 Aligned_cols=292 Identities=18% Similarity=0.154 Sum_probs=229.1
Q ss_pred hhhHHHHHHHHHHHHHHhhcccchhhCCCcccc--CCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeecccccc
Q 005009 332 FDSLKNIMLLAYSERIQRLCDMPKRAGELFWWP--FTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWW 409 (719)
Q Consensus 332 v~~Ll~~l~~~~~~r~~rl~~L~e~~~~~~~~p--~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~ 409 (719)
+...+..+..+|..+..++..+.+++++.+..- ++....++...|.++++++|. |+||.||| +|||+++|+|
T Consensus 12 ~~~~~~~~~~~~~~~~~~S~~l~~ra~~~~p~g~~~~~~~~~~~~~p~~~~~a~G~--~v~D~DG~----~yiD~~~g~g 85 (453)
T PRK07046 12 AAALLARERARFLEAHPRSRALAARAAQHLLGGVPMHWMNDWPTPFPLFVAEARGA--RFTDVDGH----RYDDFCLGDT 85 (453)
T ss_pred HHHHHHHHHHHHHhcChhhHHHHHHHHhhCCCCcccccccccCCCCCCeEEeeeeC--EEEeCCCC----EEEEeccccc
Confidence 344455566677777778888888888877553 333223333468888887776 79999999 9999999999
Q ss_pred ccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccc
Q 005009 410 TQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDH 489 (719)
Q Consensus 410 ~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~ 489 (719)
+.++||+ ||+|++|+++|+++..+. ...++...+|||+|++..+ .++|+|+||||||||.|||+| |.||+|
T Consensus 86 ~~~lGh~-~p~i~~Av~~q~~~~~~~---~~~~~~~~~lAe~l~~~~~---~~~v~F~nSGtEA~e~AlrlA-R~~TGr- 156 (453)
T PRK07046 86 GAMFGHS-PAPVARALAEQARRGLTT---MLPSEDAAWVGEELARRFG---LPYWQVATTATDANRFVLRWA-RAVTGR- 156 (453)
T ss_pred ccccCCC-CHHHHHHHHHHHHhCCCC---CCCCHHHHHHHHHHHHHhC---CCEEEEECCHHHHHHHHHHHH-HHhhCC-
Confidence 9999999 999999999999986543 3578999999999999885 689999999999999999999 888765
Q ss_pred cccccccCCCccccCcceEEEEEeCCcccCcccccccc--CCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcch
Q 005009 490 EVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQ--APSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEW 567 (719)
Q Consensus 490 G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt--~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~ 567 (719)
.+||.|+|+|||++.+++... +...++. . +...|.. ..+....
T Consensus 157 -----------------~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~-----~------~~g~~~~-~~~~~~~------ 201 (453)
T PRK07046 157 -----------------PKILVFNGCYHGTVDDVFVDLVDGRPVQRP-----G------LLGQVHD-LTATTRV------ 201 (453)
T ss_pred -----------------CEEEEECCCCCCCcHHhHhhccCCCCCCCC-----C------CCCCCcc-ccCceEe------
Confidence 489999999999987766432 2111110 0 0000000 0001111
Q ss_pred hhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHH
Q 005009 568 LYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILV 647 (719)
Q Consensus 568 ~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr 647 (719)
++|||. +.+++.+. +++|||||+||| ||++|+++|+++||++||
T Consensus 202 ----------~~~nd~------------------~~l~~~l~-------~~~vAavi~EPi-~g~~G~~~p~~~fl~~lr 245 (453)
T PRK07046 202 ----------VEFNDL------------------AALEAALA-------DGDVAAVLAEPA-MTNIGMVLPEPGFHEALR 245 (453)
T ss_pred ----------eCCCCH------------------HHHHHHhC-------CCCeEEEEECCC-CCCCCCcCCCHHHHHHHH
Confidence 235652 45666663 368999999998 999999999999999999
Q ss_pred HHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhc
Q 005009 648 KECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 648 ~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
++|++||++||+||||| | |+|...+.+++||+|||+|+||+|||| +|+||+++++++++.+.
T Consensus 246 ~lc~~~g~llI~DEV~t-f-r~g~Gg~~~~~gv~PDi~t~gK~lggG-~Pi~av~g~~~i~~~~~ 307 (453)
T PRK07046 246 ELTRRYGTLLVIDETHT-I-SSGPGGYTRAHGLEPDFLVVGKPIAGG-VPCAVYGFSAELAERAQ 307 (453)
T ss_pred HHHHHhCCEEEEEcccc-C-ccCCcchhHHhCCCccceeehhhhcCC-CcceeeeehHHHHHHHh
Confidence 99999999999999999 5 577666778899999999999999999 79999999999999885
|
|
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-49 Score=439.47 Aligned_cols=250 Identities=24% Similarity=0.300 Sum_probs=209.4
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. |+||.||| +||||+||+|++++||+ ||+|++|+++|++++.+.+. .+.+++..+|+++|.+
T Consensus 18 ~~~~~~~~~G~--~~~d~dG~----~~lD~~sg~~~~~lGh~-~p~v~~a~~~q~~~~~~~~~-~~~~~~~~~la~~l~~ 89 (395)
T PRK03715 18 PDIVFTHGKGS--WLYDHNGK----RYLDFIQGWAVNCLGHC-NPGMVEALAAQAEKLINPSP-AFYNEPMAKLAGLLTQ 89 (395)
T ss_pred CCceEEeeecC--EEEECCCC----EEEECCcChhhccCCCC-CHHHHHHHHHHHHhcccccc-cccCHHHHHHHHHHhh
Confidence 45678887776 79999999 99999999999999999 99999999999999877653 4568999999999998
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
..+ .++++|++|||||||+|||+| |.|+++. . ++|.+||+++++|||+|.+++++++...++.
T Consensus 90 ~~~---~~~v~f~~SGseA~e~Aik~a-r~~~~~~-~------------~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~ 152 (395)
T PRK03715 90 HSC---FDKVFFANSGAEANEGAIKLA-RKWGRKH-K------------NGAYEIITFDHSFHGRTLATMSASGKPGWDT 152 (395)
T ss_pred ccC---CCEEEEeCCcHHHHHHHHHHH-HHHhhcc-C------------CCCcEEEEECCCcCCChHHHHhhcCCccccc
Confidence 754 579999999999999999999 6775432 1 4578999999999999999999998654432
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
. +.+.. ++..+. +|+| .+.+++.+.
T Consensus 153 ~--------~~~~~--------~~~~~~----------------~~~d------------------~~~l~~~l~----- 177 (395)
T PRK03715 153 I--------FAPQV--------PGFPKA----------------ELND------------------IASVEKLIT----- 177 (395)
T ss_pred C--------CCCCC--------CCceee----------------CCch------------------HHHHHHHcC-----
Confidence 1 11100 011111 1333 245565553
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
++++|||+||+ ||+||+++||++||++|+++|++||++||+|||||||||||++|+++++|++|||+|+||+||||
T Consensus 178 ---~~~aavi~Epv-~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a~~~~gv~PDi~t~gK~lg~G 253 (395)
T PRK03715 178 ---DKTVAVMLEPV-QGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIEPDIMTLGKGIGGG 253 (395)
T ss_pred ---CCceEEEEeCC-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchhhHhhcCCCCceeeehhhhhCC
Confidence 36999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchheeEeCHHHHh
Q 005009 695 VIPLAATLATNAVFD 709 (719)
Q Consensus 695 ~~Plsavl~~~~i~~ 709 (719)
+|+|+++++++++.
T Consensus 254 -~p~~av~~~~~i~~ 267 (395)
T PRK03715 254 -VPLAALLAKAEVAV 267 (395)
T ss_pred -cceEEEEEcccccc
Confidence 79999999999974
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-49 Score=438.72 Aligned_cols=258 Identities=24% Similarity=0.350 Sum_probs=216.2
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|+++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|++++.+... .+.+++..+|+++|++
T Consensus 22 ~~~~~~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~~~-~~~~~~~~~la~~L~~ 93 (408)
T PRK04612 22 RQVVLERGQGS--RVWDDQGR----EYLDLAAGIAVCGLGHN-DPDLVAALTEQAGKLWHTSN-VFYSAPPLKLAEELVT 93 (408)
T ss_pred CCceEEEeeeC--EEEECCCC----EEEEcCccHhhccCCCC-CHHHHHHHHHHHHhcccccc-ccCCHHHHHHHHHHHh
Confidence 46678887775 89999999 99999999999999999 99999999999999877642 4678999999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
..|. .++|+|++|||||||+|||+| |+|++++|. .++|.+||+|+++|||+|.+++++++.+.++.
T Consensus 94 ~~~~--~~~v~f~~sGseA~e~AlklA-r~~~~~~g~-----------~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~ 159 (408)
T PRK04612 94 ASRF--AEKVFLCNSGTEANEAAIKLV-RKWASSQGR-----------PADKRVIVTFRGSFHGRTLAAVTATAQPKYQE 159 (408)
T ss_pred hCCC--CCEEEEcCchHHHHHHHHHHH-HHHHHhhCC-----------CCCCcEEEEECCCcCCccHHHHHhcCCccccc
Confidence 8764 479999999999999999999 788754432 13577899999999999999999998654443
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
. +.+. | ++..+++ |+|. +.+++.+.
T Consensus 160 ~--------~~~~---~-----~~~~~~~----------------~~d~------------------~~l~~~~~----- 184 (408)
T PRK04612 160 G--------YEPL---P-----GGFRYVD----------------FNDV------------------EALEAAMA----- 184 (408)
T ss_pred C--------CCCC---C-----CCceEcC----------------CCCH------------------HHHHHhhC-----
Confidence 2 1110 0 1112222 3331 44555553
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
++++||||+||+ |++||++.+|++|+++|+++|++||++||+|||||||||+|++|+++++++.|||+|+||+||||
T Consensus 185 --~~~~aavi~eP~-~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pdi~t~~K~l~~G 261 (408)
T PRK04612 185 --GGDVAAVMLEPI-QGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQEQVTPDIVTLAKALGGG 261 (408)
T ss_pred --CCCEEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCchhhhhhcCCCCCEEEEcchhcCC
Confidence 368999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchheeEeCHHHHhhhcC
Q 005009 695 VIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~~ 713 (719)
+|+|++++++++++.+..
T Consensus 262 -~piga~~~~~~~~~~~~~ 279 (408)
T PRK04612 262 -FPIGAMLAGPKVAETMQF 279 (408)
T ss_pred -CceEEEEECHHHHhhhcC
Confidence 799999999999988754
|
|
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-49 Score=434.71 Aligned_cols=255 Identities=26% Similarity=0.350 Sum_probs=215.0
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. |+||.||+ +||||+||+|+++|||+ ||+|++|+++|++++.+.. ..+.+++..+|+++|++
T Consensus 17 ~~~~~~~~~G~--~l~d~dG~----~ylD~~~g~~~~~lGh~-~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~L~~ 88 (397)
T TIGR03246 17 APFIPVRGEGS--RVWDQQGK----EYIDFAGGIAVNALGHA-HPELVKALIEQADKLWHIG-NGYTNEPVLRLAKKLVD 88 (397)
T ss_pred CCceEEEeecC--EEEeCCCC----EEEECCcCHhhccCCCC-CHHHHHHHHHHHHhccccc-CccCCHHHHHHHHHHHh
Confidence 36688887776 89999999 99999999999999999 9999999999999865543 24578999999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
..+ .++++|+||||||||+|||+| |.|+.+++. ++|.+||+++++|||+|.+++++++...++.
T Consensus 89 ~~~---~~~~~f~~SGseA~e~Alk~a-r~~~~~~~~------------~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~ 152 (397)
T TIGR03246 89 ATF---ADKVFFCNSGAEANEAALKLA-RRYALDKHG------------ADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQ 152 (397)
T ss_pred hCC---CCEEEEeCCcHHHHHHHHHHH-HHHHHhcCC------------CCCCEEEEECCCcCCccHHHHHhcCCccccc
Confidence 876 479999999999999999999 788755422 4678999999999999999999987544433
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
. +.++ + ++..++ +|||. +.+++.+.
T Consensus 153 ~--------~~~~--~------~~~~~~----------------~~~d~------------------~~l~~~l~----- 177 (397)
T TIGR03246 153 G--------FAPL--P------GGIKHA----------------PYNDL------------------AAAKALIS----- 177 (397)
T ss_pred C--------CCCC--C------CceEEe----------------CCCCH------------------HHHHHHhc-----
Confidence 2 1111 0 122222 24442 45666663
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
++++|||+||+ |++||+++||++||++|+++|++||++||+|||||||||||++|+++++|+.|||+|+||+||||
T Consensus 178 ---~~~aavi~Epi-~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~a~~~~gv~pDi~t~~K~lggG 253 (397)
T TIGR03246 178 ---DKTCAVIVEPI-QGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDILTSAKALGGG 253 (397)
T ss_pred ---cCeEEEEEecc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccchhhhhcCCCCCEEEeehhhhCC
Confidence 36999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchheeEeCHHHHhhhcC
Q 005009 695 VIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~~ 713 (719)
+|+|++++++++++.|..
T Consensus 254 -~pigav~~~~~i~~~~~~ 271 (397)
T TIGR03246 254 -FPIGAMLTTTEIAAHLKV 271 (397)
T ss_pred -cceeEEEEcHHHHHhccC
Confidence 799999999999998854
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-49 Score=433.59 Aligned_cols=256 Identities=24% Similarity=0.340 Sum_probs=211.7
Q ss_pred CCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCe
Q 005009 384 GENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASR 463 (719)
Q Consensus 384 G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~r 463 (719)
|.|+|+||.||| +||||++|+|+.++||+ ||+|++|+++|++++.+.+. .+.+++..+|+++|++..+ .++
T Consensus 4 ~~G~~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~~~-~~~~~~~~~la~~l~~~~~---~~~ 74 (382)
T PLN00144 4 GKGCKLYDVEGK----EYLDMAAGIAVNALGHG-DPDWVKAVAEQAGTLAHVSN-VYHTIPQVELAKRLVASSF---ADR 74 (382)
T ss_pred eeccEEEeCCCC----EEEECCcCHHhccCCCC-CHHHHHHHHHHHHhcCCccc-cccCHHHHHHHHHHHhcCC---CCe
Confidence 444589999999 99999999999999999 99999999999999877653 3568999999999999875 579
Q ss_pred EEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccC
Q 005009 464 AYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSG 543 (719)
Q Consensus 464 v~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~ 543 (719)
|+|++|||||||+|||+| |.|++++|.. ++..+..+|.+||+|+++|||+|.+++++++...++.. +
T Consensus 75 v~f~~sGseA~e~AlklA-r~~~~~~~~~-----~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~----~--- 141 (382)
T PLN00144 75 VFFCNSGTEANEAAIKFA-RKYQRVRAPD-----KKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTP----F--- 141 (382)
T ss_pred EEEeCCcHHHHHHHHHHH-HHHHhccCCC-----CccccccccceEEEECCCcccccHHHHhcCCCcccccc----C---
Confidence 999999999999999999 8888765430 00000122689999999999999999999986544432 1
Q ss_pred CCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEE
Q 005009 544 RGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGAL 623 (719)
Q Consensus 544 ~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAv 623 (719)
.+. . ++..+++ |||. +.+++.+. .++++||
T Consensus 142 -~~~--~------~~~~~~~----------------~~d~------------------~~l~~~~~-------~~~~aav 171 (382)
T PLN00144 142 -EPL--M------PGVTFVE----------------YGNL------------------EAARKLIQ-------KGKTAAV 171 (382)
T ss_pred -CCC--C------CCeEEeC----------------CCCH------------------HHHHHhcC-------CCCeEEE
Confidence 110 0 1122222 4442 45665553 3589999
Q ss_pred EEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCCccchheeEe
Q 005009 624 IIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLA 703 (719)
Q Consensus 624 IvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~ 703 (719)
|+||+ ||.||+..++.+|+++|+++|++||++||+|||+|||||+|++|+++++++.|||+||||+|+|| +|+|++++
T Consensus 172 i~eP~-q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~PDi~t~sK~l~~G-~pig~v~~ 249 (382)
T PLN00144 172 FVEPV-QGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGVEPDIMTLAKPLAGG-LPIGAVLV 249 (382)
T ss_pred EEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCCCCCEEEecccccCC-cceEEEEE
Confidence 99998 99999999999999999999999999999999999999999999999999999999999999999 79999999
Q ss_pred CHHHHhhhcC
Q 005009 704 TNAVFDSFVG 713 (719)
Q Consensus 704 ~~~i~~~~~~ 713 (719)
++++++.|..
T Consensus 250 ~~~~~~~~~~ 259 (382)
T PLN00144 250 TEKVASAINP 259 (382)
T ss_pred cHHHHhccCC
Confidence 9999998853
|
|
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=437.97 Aligned_cols=277 Identities=18% Similarity=0.195 Sum_probs=208.8
Q ss_pred CeEEEEeecCCceEEEeC-CCCcccceeeeccccccccCCCCCCCHHHH--HHHHHhhhhcccc--cCCCCCChHHHHHH
Q 005009 375 AVTVIDSRCGENFSVYQD-QKNKFIGQQFDACASWWTQGPDATLQIELA--RDMGYTAARFGHV--MFPENVYEPALECA 449 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~-dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~--~Av~~q~~~~~~~--~~~~~~~~~~~~La 449 (719)
.|.+++-.+|.|+|+||. ||| +||||++|+|++++||+ ||+|+ +|+++|++++.+. +...+.+++..+++
T Consensus 17 ~p~~~~~~~a~G~~l~D~~dG~----~ylD~~~g~~~~~lGh~-~p~v~~~~ai~~q~~~~~~~~~~~~~~~~~~~~~l~ 91 (431)
T TIGR03251 17 FDLVLDLDRSRGSVLVDARDGR----RYLDMFSFFASMALGMN-HPALVDDLAFRARLGAAAVNKPSNSDVYTVAMARFV 91 (431)
T ss_pred CceeeEEEeccCCEEEECCCCC----ChhhcccChhhcCCCCC-ChhhhHHHHHHHHHHHhhhcccccCCCCCHHHHHHH
Confidence 355543333455589996 999 99999999999999999 99999 9999999987532 22346788999999
Q ss_pred HHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhcc----ccccccccCCCccccCcceEEEEEeCCcccCcccccc
Q 005009 450 ELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD----HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAME 525 (719)
Q Consensus 450 e~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~----~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~gals 525 (719)
++|++.++.+.+++|+|+||||||||+|||+| |+|+++ +|. +.++|.+||+|+++|||+|.++++
T Consensus 92 ~~l~~~~~~~~~~~v~f~~sGsEAve~AlklA-r~~t~~~~~~~g~----------~~~~~~~ii~~~~~yHG~t~~als 160 (431)
T TIGR03251 92 DTFARVLGDPALPHLFFIEGGALAVENALKTA-FDWKSRHNQARGI----------PAALGTQVLHLRQAFHGRSGYTLS 160 (431)
T ss_pred HHHHHhcCCCCcCEEEEeCCcHHHHHHHHHHH-HHHhhcchhhcCC----------CCCCCceEEEECCccCCcchhhhh
Confidence 99999863233789999999999999999999 788754 232 002367899999999999999999
Q ss_pred ccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHH
Q 005009 526 AQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYIS 605 (719)
Q Consensus 526 lt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le 605 (719)
+++...++.. +.+.++. .+++.|+.. + +++..+ ..+...+...+++.++
T Consensus 161 ~~~~~~~~~~--------~~~~~~~---------~~~~~p~~~-~--------~~~~~~-----~~~~~~~~~~~l~~~~ 209 (431)
T TIGR03251 161 LTNTDPRKTA--------RFPKFDW---------PRIDNPKLT-F--------PLDAPN-----LDQVIALEEEALRQAR 209 (431)
T ss_pred ccCCcccccc--------CCCCCCC---------ccCCCCccc-C--------Cccccc-----cchhhHHHHHHHHHHH
Confidence 9985433321 1111100 112222211 0 011000 0001123334567788
Q ss_pred HHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee
Q 005009 606 QNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA 685 (719)
Q Consensus 606 ~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv 685 (719)
+.+++ .+++|||||+||| ||+||+++||++||++|+++|++||++||+|||||||||||++|+++++|++|||+
T Consensus 210 ~~~~~-----~~~~iAavivEPv-~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~a~~~~gv~PDi~ 283 (431)
T TIGR03251 210 AAFAE-----RPHDIACFIAEPI-QGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVQPDIV 283 (431)
T ss_pred HHHHh-----CCCcEEEEEEecc-ccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccchHHHHHhcCCCCCEE
Confidence 88863 4689999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred eehhccCCCccchheeEeCHHHHh
Q 005009 686 CYGKLLTGGVIPLAATLATNAVFD 709 (719)
Q Consensus 686 tlgK~LggG~~Plsavl~~~~i~~ 709 (719)
|+||++ |++++++.+++.+
T Consensus 284 ~~gK~~-----~~~g~~~~~~i~~ 302 (431)
T TIGR03251 284 AFGKKT-----QVCGIMAGRRVDE 302 (431)
T ss_pred EecccC-----ccceEEecchHHH
Confidence 999996 6667777776543
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-49 Score=476.71 Aligned_cols=270 Identities=19% Similarity=0.188 Sum_probs=216.4
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. |+||.||| +||||++|+. ++||+ ||+|++|+++|++++.+.+ .+.++...+|+++|++
T Consensus 567 ~p~~i~~g~G~--~l~D~dG~----~ylD~~~~~~--~lGh~-hp~v~~Ai~~q~~~l~~~~--~~~~~~~~elae~L~~ 635 (972)
T PRK06149 567 DPPQIERGWRH--HLFDMAGR----SYLDMVNNVT--VLGHG-HPRLAAAAARQWSLLNTNS--RFHYAAVAEFSERLAA 635 (972)
T ss_pred CCCeEEEeeee--EEEeCCCC----EEEECCCCcc--ccCCC-CHHHHHHHHHHHHhccccc--cccCHHHHHHHHHHHH
Confidence 35678887775 89999999 9999999863 79999 9999999999999876543 3568899999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
.+|.+ +++|+|+||||||||+|||+| |.|++| .+||+++++|||+|.+++++++....+.
T Consensus 636 ~~p~~-~~~v~f~~SGsEA~e~AlklA-r~~tgr------------------~~ii~~~~~yHG~t~ga~~~s~~~~~~~ 695 (972)
T PRK06149 636 LAPDG-LDTVFLVNSGSEANDLAIRLA-WAASGR------------------RDVVSVLEAYHGWTVATDAVSTSIADNP 695 (972)
T ss_pred hCCCC-cCEEEEeCCchHHHHHHHHHH-HHhcCC------------------CeEEEEeCCCCCcChhHhhhcCCccccc
Confidence 98754 689999999999999999999 788754 4899999999999999999876422111
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
.++.. ..+++..++.|+.|+++ |++. +....|.+.+++.++...
T Consensus 696 ----~~~~~-----------~~~~v~~~~~p~~~~~~--------~~~~-----------~~~~~~~~~~~~~l~~~~-- 739 (972)
T PRK06149 696 ----QALET-----------RPDWVHPVESPNTYRGR--------FRGA-----------DSAADYVRDVVAQLEELD-- 739 (972)
T ss_pred ----cccCC-----------CCCCeEEeCCCcccCCc--------CCCc-----------ccHHHHHHHHHHHHHHHh--
Confidence 01000 01234456667666432 3221 011223344444443211
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc-cccccccCCCcceeeehhccCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPDIACYGKLLTG 693 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~-~~a~e~~gv~PDIvtlgK~Lgg 693 (719)
..++++||||+||| ||+||++++|++||++|+++|++||++||+|||||||||||+ ||+++++||+|||+|+||+|||
T Consensus 740 ~~~~~iAavI~Epv-~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PDivt~gK~lg~ 818 (972)
T PRK06149 740 ASGRGLAGFICEPV-YGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPDIITMAKGMGN 818 (972)
T ss_pred hcCCceEEEEEccc-ccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCCCCCEEEecccccC
Confidence 24678999999998 999999999999999999999999999999999999999998 7899999999999999999999
Q ss_pred CccchheeEeCHHHHhhhcC
Q 005009 694 GVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~~ 713 (719)
| +|+|||++++++++.|..
T Consensus 819 G-~Pl~av~~~~~i~~~~~~ 837 (972)
T PRK06149 819 G-HPLGAVITRREIAEALEA 837 (972)
T ss_pred C-eeeEEEEEcHHHHhhhcc
Confidence 9 799999999999998864
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-47 Score=425.71 Aligned_cols=255 Identities=26% Similarity=0.335 Sum_probs=214.2
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. |+||.||+ +||||++|+|+++|||+ ||+|++|+++|++++.+.. ..+.+++..+|+++|++
T Consensus 21 ~~~~~~~~~G~--~~~d~dG~----~~lD~~~g~~~~~lGh~-~p~v~~A~~~~~~~~~~~~-~~~~~~~~~~la~~l~~ 92 (406)
T PRK12381 21 APFIPVRGEGS--RLWDQQGK----EYIDFAGGIAVNALGHA-HPALREALNEQASKFWHTG-NGYTNEPVLRLAKKLID 92 (406)
T ss_pred CCceEEEeecC--EEEeCCCC----EEEEcCcCHhhccCCCC-CHHHHHHHHHHHhhccccc-CccCCHHHHHHHHHHHh
Confidence 35678887776 89999999 99999999999999999 9999999999999876654 34678899999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
+.+ .++|+|++||+||||+|+|+| |.|+.+++. ++|.+||+++++|||+|.+++++++.+.++.
T Consensus 93 ~~~---~~~v~~~~sGseA~e~Alk~a-r~~~~~~~~------------~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~ 156 (406)
T PRK12381 93 ATF---ADRVFFCNSGAEANEAALKLA-RKYAHDRYG------------SHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQ 156 (406)
T ss_pred hCC---CCeEEEcCCcHHHHHHHHHHH-HHHHhhcCC------------CCCCeEEEECCCcCCcchhHHhhcCCccccc
Confidence 875 479999999999999999999 777654332 4578999999999999999999998654432
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
. +.+. + ++..++ +|||. +.+++.+.
T Consensus 157 ~--------~~~~--~------~~~~~~----------------~~~d~------------------~~l~~~l~----- 181 (406)
T PRK12381 157 D--------FAPL--P------PDIRHA----------------AYNDL------------------NSASALID----- 181 (406)
T ss_pred C--------CCCC--C------CCeeEe----------------CCCCH------------------HHHHHhcc-----
Confidence 1 1111 0 111111 24442 44565553
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
++++|||+||+ ||+||++++|++|+++|+++|++||++||+|||||||||+|++|+++++++.||++|+||+||||
T Consensus 182 ---~~~aaviiEPv-~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~~~~~~~v~pDi~t~sK~l~gG 257 (406)
T PRK12381 182 ---DQTCAVIVEPI-QGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDVLTTAKALGGG 257 (406)
T ss_pred ---CCeeEEEEeCC-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchhhhHhhCCCCCEEEehhhhhCC
Confidence 47999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchheeEeCHHHHhhhcC
Q 005009 695 VIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~~ 713 (719)
+|+|++++++++++.+..
T Consensus 258 -~~ig~~~~~~~~~~~~~~ 275 (406)
T PRK12381 258 -FPIGAMLTTEKCASVMTV 275 (406)
T ss_pred -CceEEEEEcHHHHhhcCC
Confidence 799999999999998854
|
|
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=425.46 Aligned_cols=258 Identities=22% Similarity=0.338 Sum_probs=216.5
Q ss_pred eEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhc
Q 005009 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (719)
Q Consensus 376 p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~ 455 (719)
|.++++++|. |+||.||+ +||||+||+++.++||+ ||+|++|+++|++++.+.+. .+.+++..+|+++|+++
T Consensus 58 p~~~~~a~G~--~l~d~dG~----~ylD~~sg~~~~~~Gh~-~p~v~~ai~~ql~~~~~~~~-~~~~~~~~~la~~L~~~ 129 (474)
T PLN02624 58 PVVFSRAKGS--RIWDPEGK----KYLDFLSAYSAVNQGHC-HPKIIKALTEQAEKLTLSSR-AFYNDKFPEFAEYLTSM 129 (474)
T ss_pred CceEEeeeeC--EEEECCCC----EEEEcccchhcccCCCC-CHHHHHHHHHHHHhcCCccc-ccCCHHHHHHHHHHHhh
Confidence 6688887776 79999999 99999999999999999 99999999999999887653 46799999999999998
Q ss_pred cCCCCCCeEEEeCChHHHHHHHHHHHHHHhhc-cccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSF-DHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 456 ~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~-~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
+| .++++|+|||+||||+|||+| |.|+. ++|. ..+|.+||++.++|||+|.+++++++...++.
T Consensus 130 ~~---~~~~~f~~SGseA~e~AlklA-r~~~~~~~g~-----------~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~ 194 (474)
T PLN02624 130 FG---YDMVLPMNTGAEGVETAIKLA-RKWGYEKKGI-----------PKNEAIIVSCCGCFHGRTLAAISMSCDNEATR 194 (474)
T ss_pred cC---CCeEEEeCChHHHHHHHHHHH-HHHHHhhcCC-----------CCCCcEEEEECCCcCCCCHHHhhcCCCccccc
Confidence 86 579999999999999999999 66642 2221 02467899999999999999999987543322
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
++++.. | +..++ +|+|. +.+++.++.
T Consensus 195 --------~~~~~~--~------~~~~~----------------~~~d~------------------~~l~~~l~~---- 220 (474)
T PLN02624 195 --------GFGPLL--P------GHLKV----------------DFGDL------------------DALEKIFEE---- 220 (474)
T ss_pred --------cCCCCC--C------CceEe----------------CCCCH------------------HHHHHHHHh----
Confidence 111111 1 11122 24442 456677753
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
.++++||||+||+ ||++|++.|+++||++|+++|++||++||+|||||||||+|++|+++++++.|||+|+||++|||
T Consensus 221 -~~~~iaaiiiEpv-~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~~~a~~~~~i~pDiv~lsK~lggG 298 (474)
T PLN02624 221 -DGDRIAAFLFEPI-QGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDWEEVRPDVVILGKALGGG 298 (474)
T ss_pred -CCCCEEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcchhhHHhcCCCCCEEEecccccCC
Confidence 3578999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchheeEeCHHHHhhhc
Q 005009 695 VIPLAATLATNAVFDSFV 712 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~ 712 (719)
++|+|++++++++++.+.
T Consensus 299 ~~pigav~~~~~i~~~~~ 316 (474)
T PLN02624 299 VIPVSAVLADKDVMLCIK 316 (474)
T ss_pred CCcceeeeecHHHHhHhc
Confidence 899999999999988774
|
|
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-44 Score=397.50 Aligned_cols=257 Identities=20% Similarity=0.301 Sum_probs=212.9
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. |+||.||| +||||++|+|+.++||+ ||+|++|+++|++++.+.+. .+.+++..+|+++|++
T Consensus 22 ~p~~~~~~~G~--~l~d~~G~----~~lD~~~g~~~~~lGh~-~p~v~~ai~~~~~~~~~~~~-~~~~~~~~~l~~~l~~ 93 (396)
T PRK04073 22 LPIVISEAEGV--WVKDPEGN----RYMDMLSAYSAVNQGHR-HPKIIQALKDQADKVTLTSR-AFHSDQLGPWYEKVAK 93 (396)
T ss_pred CCceEEeeeec--EEEECCCC----EEEEcCCCHHhccCCCC-CHHHHHHHHHHHhhcccccc-ccCCHHHHHHHHHHHh
Confidence 36678887665 89999999 99999999999999999 99999999999999887653 4578899999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhcc-ccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD-HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~-~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~ 533 (719)
+.| .++++|++||+||||+|||+| |.|+.. +|. .++|.+||+++++|||+|.+++++++.+.++
T Consensus 94 ~~~---~~~~~~~~SGseA~e~Alk~a-~~~~~~~~g~-----------~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~ 158 (396)
T PRK04073 94 LTG---KDMVLPMNTGAEAVETAIKAA-RRWAYDVKGV-----------EPNKAEIIACEGNFHGRTMAAVSLSSEEEYK 158 (396)
T ss_pred cCC---CCeEEEcCChHHHHHHHHHHH-HHHhhhccCC-----------CCCCCEEEEECCCcCCCCHHHHhhcCCcccc
Confidence 876 479999999999999999999 666421 121 1456799999999999999999999754333
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
.. +.+.+ ++..+++ |+|. +.+++.+.
T Consensus 159 ~~--------~~~~~--------~~~~~~~----------------~~d~------------------~~l~~~i~---- 184 (396)
T PRK04073 159 RG--------FGPML--------PGIKKIP----------------YGDL------------------EALKAAIT---- 184 (396)
T ss_pred cC--------CCCCC--------CCceEeC----------------CCCH------------------HHHHHhcc----
Confidence 21 11110 1112222 3432 44555553
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCC
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lgg 693 (719)
+++++||+||+ |+.+|.+.++++|+++|+++|++||++||+|||||||||+|++|+++++++.||++|+||++|+
T Consensus 185 ----~~~~~viiep~-~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~pdi~~~sK~lg~ 259 (396)
T PRK04073 185 ----PNTAAFLVEPI-QGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFACDWDNVTPDMYILGKALGG 259 (396)
T ss_pred ----cCeEEEEEcCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHHHhhhcCCCCCEEEecccccC
Confidence 36899999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchheeEeCHHHHhhhcC
Q 005009 694 GVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~~ 713 (719)
|.+|+|++++++++++.+..
T Consensus 260 gg~~ig~~~~~~~i~~~~~~ 279 (396)
T PRK04073 260 GVFPISCVAANRDILGVFTP 279 (396)
T ss_pred CCCcceEEEEcHHHHhhhcC
Confidence 88899999999999998853
|
|
| >KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-45 Score=374.30 Aligned_cols=280 Identities=20% Similarity=0.287 Sum_probs=229.6
Q ss_pred CCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHH
Q 005009 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (719)
Q Consensus 374 ~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~ 453 (719)
+.|+.|+++.|. |++|.+|+ +|||+++.+ ...||| ||+|++|..+|+...... ..+.|+...+.|++|.
T Consensus 28 sDP~kivRaq~Q--YmfDE~g~----~yLDCInNV--aHvghc-hp~VV~A~~kQmat~~tN--~RFlhd~lv~cA~~l~ 96 (452)
T KOG1403|consen 28 SDPLKIVRAQGQ--YMFDEEGT----RYLDCINNV--AHVGHC-HPEVVRAGAKQMATISTN--NRFLHDELVQCARTLT 96 (452)
T ss_pred CCchhhehhccc--eeeccCcc----cHHHHhhhh--hhcccC-CHHHHHHHHHHHhHhccc--chhhHHHHHHHHHHHh
Confidence 457888898887 79999999 999999854 368999 999999999999986543 3578999999999999
Q ss_pred hccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCC
Q 005009 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (719)
Q Consensus 454 ~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~ 533 (719)
..+|. ++.++|+|||||||+.|+|+| |.|+++ .++|.++.+|||+....|.+|..+ |+
T Consensus 97 stlPe--Lsvc~F~NSGSEANDLALRLA-R~ftkh------------------qDvItldHAYHGHl~s~mE~SPYK-F~ 154 (452)
T KOG1403|consen 97 STLPE--LSVCFFVNSGSEANDLALRLA-RNFTKH------------------QDVITLDHAYHGHLQSVMEVSPYK-FN 154 (452)
T ss_pred hcCCC--ceEEEEecCCchhhHHHHHHH-Hhhccc------------------CceEEEechhccceeeeeecccee-cc
Confidence 99986 899999999999999999999 888776 489999999999999888887432 11
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
.+ . .+.-++-++..|.|+.|++..... .+.+ .+....|.+.+++.++...
T Consensus 155 ~g--------~-------~v~kpd~VHVAPcPDvyrGK~r~~---~~~~-----------a~~~~~Yad~vk~I~~d~~- 204 (452)
T KOG1403|consen 155 QG--------G-------GVAKPDYVHVAPCPDVYRGKFRDK---MYPD-----------ADMGALYADPVKEICQDQL- 204 (452)
T ss_pred CC--------C-------CcCCCceeEecCCccccccccccc---cCCc-----------ccchhhhhhHHHHHHHHHH-
Confidence 11 0 011112356788999998753211 1111 1223456677777776521
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc-cccccccCCCcceeeehhccC
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPDIACYGKLLT 692 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~-~~a~e~~gv~PDIvtlgK~Lg 692 (719)
..+..|||+|.|.. |+.||-++||++|++.+.+..+.+|.++|+||||+||||.|+ +|++|.|++.|||||+||.||
T Consensus 205 -~~g~gvAAfiAEsl-QSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRvG~hyWafq~y~fiPDIVtmgKpmG 282 (452)
T KOG1403|consen 205 -AKGQGVAAFIAESL-QSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRVGSHYWAFQTYNFIPDIVTMGKPMG 282 (452)
T ss_pred -hcCCcHHHHHHHHH-HhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccccchhhhhhhhhccccchheecccCC
Confidence 24568999999997 999999999999999999999999999999999999999999 899999999999999999999
Q ss_pred CCccchheeEeCHHHHhhhcC-CCCCCC
Q 005009 693 GGVIPLAATLATNAVFDSFVG-DSKKRE 719 (719)
Q Consensus 693 gG~~Plsavl~~~~i~~~~~~-~~~~~~ 719 (719)
+| .|+++|+++++|+++|.. +-.+||
T Consensus 283 NG-hPVa~VattkeIA~Af~atgv~YFN 309 (452)
T KOG1403|consen 283 NG-HPVAAVATTKEIAQAFHATGVEYFN 309 (452)
T ss_pred CC-CeeeEEeccHHHHHHhccccceehh
Confidence 99 799999999999999976 555553
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-44 Score=397.69 Aligned_cols=257 Identities=21% Similarity=0.290 Sum_probs=208.2
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. |+||.||+ +|||+++|+|++++||+ ||+|++|+++|+++..+. .+.++...+|+++|++
T Consensus 30 ~p~~~~~~~G~--~l~d~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~---~~~~~~~~~lae~l~~ 99 (423)
T TIGR00713 30 TPFFVARGKGA--YLYDVDGN----EYIDYVLSWGPLILGHA-HPRVVEAVKEALERGTSY---GAPTEAEILLAKEIIS 99 (423)
T ss_pred CCeeEEeccCC--EEEeCCCC----EEEEccccccccccCCC-CHHHHHHHHHHHHhCCcC---CCCCHHHHHHHHHHHH
Confidence 47788887775 89999999 99999999999999999 999999999999986542 3567889999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
..+. .++|+|++|||||||+|+|+| |.|+++ .+||+++++|||.+.+++++++......
T Consensus 100 ~~~~--~~~v~~~~sGseA~e~Alk~a-r~~~gr------------------~~ii~~~~~yhG~~~~~~~~~~~~~~~~ 158 (423)
T TIGR00713 100 RVPS--VEMVRFVNSGTEATMSAVRLA-RGYTGR------------------DKIIKFEGCYHGHHDALLVKAGSGAATL 158 (423)
T ss_pred hCCc--ccEEEEeCCHHHHHHHHHHHH-HHhhCC------------------CEEEEEcCCCCCChhhhhccccCccccc
Confidence 8875 379999999999999999999 788654 5899999999999888877665321110
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
..++... + + ....|+.++ ++|+| .+.+++.+.+
T Consensus 159 --~~~~~~~----~--~---------~~~~~~~~~--------~~~~d------------------~~~l~~~i~~---- 191 (423)
T TIGR00713 159 --GLPTSPG----V--P---------EDFAKLTLV--------LPYND------------------LEALEEVFEE---- 191 (423)
T ss_pred --CCCCCCC----C--C---------cccccceEE--------eCCCC------------------HHHHHHHHHH----
Confidence 0011000 0 0 000111111 12343 2556777763
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
.+++++|||+||+ ||++|+++++++|+++|+++|++||++||+||||||| |+|.+|+++++++.|||+||||++|+|
T Consensus 192 -~~~~~aavi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~-r~g~~~~~~~~~~~pDi~t~sK~l~~G 268 (423)
T TIGR00713 192 -YGEEIAGVIVEPV-AGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGF-RVALGGAQEYFGVEPDLTTLGKIIGGG 268 (423)
T ss_pred -cCCcEEEEEEeCC-CCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccccc-ccCcchhHHHhCCCcchhhhhhhhcCC
Confidence 3468999999998 9999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred ccchheeEeCHHHHhhhcC
Q 005009 695 VIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~~ 713 (719)
+|+|++++++++++.+..
T Consensus 269 -~pig~v~~~~~i~~~~~~ 286 (423)
T TIGR00713 269 -LPVGAFGGRREIMERLAP 286 (423)
T ss_pred -CceeeeeEHHHHHHhhCc
Confidence 799999999999998863
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=395.18 Aligned_cols=268 Identities=26% Similarity=0.360 Sum_probs=219.4
Q ss_pred eEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhc
Q 005009 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (719)
Q Consensus 376 p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~ 455 (719)
|.++++++|. |+||.||+ +||||++|+|++++||+ ||+|++|+++|++++.+..+..+.+++..+|+++|++.
T Consensus 24 p~~~~~~~G~--~l~d~dG~----~~lD~~~g~~~~~lGh~-~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~ 96 (425)
T PRK08088 24 PIFADRAENC--RVWDVEGR----EYLDFAGGIAVLNTGHL-HPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEKMNQK 96 (425)
T ss_pred CceEEeeeeC--EEEeCCCC----EEEEcCCchhhcCCCCC-CHHHHHHHHHHHhhCCCccccccCCHHHHHHHHHHHHh
Confidence 6688887775 79999999 99999999999999999 99999999999999877654445688999999999998
Q ss_pred cCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCC
Q 005009 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (719)
Q Consensus 456 ~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~ 535 (719)
.|.+..++++|++||+||||+|||+| |.++++ .+||+|+++|||+|.+++++++...
T Consensus 97 ~~~~~~~~~~f~~sGsea~e~Alkla-r~~~~r------------------~~iv~~~~~yHG~~~~~~~~~~~~~---- 153 (425)
T PRK08088 97 VPGDFAKKTLLVTTGSEAVENAVKIA-RAATKR------------------SGVIAFTGAYHGRTHYTLALTGKVN---- 153 (425)
T ss_pred CCCCCCCEEEEeCCcHHHHHHHHHHH-HHHhCC------------------CeEEEECCccCCccHHHHHhhCCCC----
Confidence 77553469999999999999999999 777654 4899999999999999999986321
Q ss_pred CCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 005009 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (719)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~ 615 (719)
++..++++. + .+..++++|..+ ++. ..+.+.+.+++.++.. .
T Consensus 154 ---~~~~~~~~~--~------~~~~~~~~p~~~------------~~~------------~~~~~~~~l~~~l~~~---~ 195 (425)
T PRK08088 154 ---PYSAGMGLM--P------GHVYRALYPCPL------------HGV------------SEDDAIASIERIFKND---A 195 (425)
T ss_pred ---ccccCCCCC--C------CCcEEcCCCccc------------cCc------------cHHHHHHHHHHHHHhc---c
Confidence 122222211 1 122344444322 110 0123356678777531 2
Q ss_pred CCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCCc
Q 005009 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (719)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG~ 695 (719)
.++++||||+||+ ||++|+++++++|+++|+++|++||+++|+|||+|||||+|++++++++++.|||.+|||+|++|
T Consensus 196 ~~~~~aavi~Epi-~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~~~~~~~~~~~pdi~s~sK~l~~G- 273 (425)
T PRK08088 196 APEDIAAIIIEPV-QGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLFAMEQMGVAADLTTFAKSIAGG- 273 (425)
T ss_pred CCCceEEEEECcc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhHHhhcCCCCCEEEEeccccCC-
Confidence 3578999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchheeEeCHHHHhhhcC
Q 005009 696 IPLAATLATNAVFDSFVG 713 (719)
Q Consensus 696 ~Plsavl~~~~i~~~~~~ 713 (719)
+|+|++++++++++.+..
T Consensus 274 ~rig~v~~~~~~~~~~~~ 291 (425)
T PRK08088 274 FPLAGVTGRAEVMDAIAP 291 (425)
T ss_pred CcceeeEecHHHHhhcCC
Confidence 799999999999998854
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=394.26 Aligned_cols=256 Identities=23% Similarity=0.325 Sum_probs=206.9
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. |+||.||+ +|||+++|+|+.++||+ ||+|++|+++|+++..+ ..+.++...+|+++|++
T Consensus 32 ~~~~~~~a~G~--~l~d~dG~----~~lD~~~g~~~~~lGh~-~p~i~~a~~~~~~~~~~---~~~~~~~~~~la~~L~~ 101 (426)
T PRK00062 32 TPRFIERAKGA--YLYDVDGN----EYIDYVGSWGPMILGHA-HPEVVEAVIEAAEKGLS---FGAPTELEVELAELVIE 101 (426)
T ss_pred CCeEEEeCcCC--EEEeCCCC----EEEEcccchhhhhcCCC-CHHHHHHHHHHHHhCCc---CCCCCHHHHHHHHHHHH
Confidence 36778887775 89999999 99999999999999999 99999999999998432 23568889999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
.++. .++|+|+|||+||||+|+|+| |.++++ .+||+|+++|||+|.++.++++......
T Consensus 102 ~~~~--~~~v~~~~sGseA~e~Aik~a-~~~~g~------------------~~ii~~~~~yHG~t~~~~~~~~~~~~~~ 160 (426)
T PRK00062 102 LVPS--IEMVRMVNSGTEATMSAIRLA-RGYTGR------------------DKIIKFEGCYHGHADSLLVKAGSGAATL 160 (426)
T ss_pred hCCC--CCEEEEecCHHHHHHHHHHHH-HHHhCC------------------CeEEEEcCccCCchhhhhhccCcccccc
Confidence 8763 589999999999999999999 677543 5899999999999988888765321110
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
. .++... . +. .+ .+..++ ++|+| .+.+++.+++
T Consensus 161 ~--~~~~~~----~--~~--------~~-~~~~~~--------~~~~d------------------~~~l~~~i~~---- 193 (426)
T PRK00062 161 G--LPDSPG----V--PE--------DF-AKHTLT--------APYND------------------LEAVEELFEE---- 193 (426)
T ss_pred C--CCCCCC----C--Cc--------cc-ccceEE--------cCCCC------------------HHHHHHHHHh----
Confidence 0 011000 0 00 00 011111 12343 2456666653
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
.++++++||+||+ ||++|+++++++||++|+++|++||++||+||||||| |+|.+|+++++++.|||+++||++|||
T Consensus 194 -~~~~~aaiivEpv-~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~-r~g~~~~~~~~~~~pDi~~~gK~l~~G 270 (426)
T PRK00062 194 -YGDEIAAVIVEPV-AGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGF-RVALGGAQGYYGVTPDLTTLGKIIGGG 270 (426)
T ss_pred -CCCcEEEEEEeCC-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhcc-ccCCccHHHHhCCCcchHhhhhHhhCC
Confidence 3568999999998 9999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred ccchheeEeCHHHHhhhc
Q 005009 695 VIPLAATLATNAVFDSFV 712 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~ 712 (719)
+|+|++++++++++.|.
T Consensus 271 -~p~ga~~~~~~i~~~~~ 287 (426)
T PRK00062 271 -LPVGAFGGRREIMEQLA 287 (426)
T ss_pred -CcceeeeEHHHHHHhhc
Confidence 79999999999999885
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-43 Score=387.78 Aligned_cols=255 Identities=23% Similarity=0.337 Sum_probs=213.1
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. |+||.||| +||||+||+|++++||+ ||+|++|+++|++++.+... .+.++...+|+++|++
T Consensus 13 ~~~~~~~~~G~--~~~d~dG~----~~lD~~~g~~~~~lGh~-~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~la~~l~~ 84 (389)
T PRK01278 13 ADLAFERGEGV--WLIDEDGE----RYLDFASGIAVNSLGHA-HPHLVEALKEQAEKLWHVSN-LYRIPEQERLAERLVE 84 (389)
T ss_pred CCceEEeeecC--EEEECCCC----EEEECCccHhhccCCCC-CHHHHHHHHHHHHhcCcccc-ccCChHHHHHHHHHHh
Confidence 46788887775 79999999 99999999999999999 99999999999998766542 3568999999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
..+ .++|+|++||+||||+|+|+| |.|+..+|. ++|.+||+++++|||++.+++++++...++.
T Consensus 85 ~~~---~~~v~~~~sGseA~~~al~~a-r~~~~~~G~------------~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~ 148 (389)
T PRK01278 85 NSF---ADKVFFTNSGAEAVECAIKTA-RRYHYGKGH------------PERYRIITFEGAFHGRTLATIAAGGQEKYLE 148 (389)
T ss_pred hCC---CCEEEEcCCcHHHHHHHHHHH-HHHHHhcCC------------CCCCEEEEECCCcCCCcHHHHhccCChhhcc
Confidence 875 479999999999999999999 777655443 5678999999999999999999987543332
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
. +.+.. +++.++ +|+|. +.+++.+.
T Consensus 149 ~--------~~~~~--------~~~~~~----------------~~~d~------------------~~l~~~l~----- 173 (389)
T PRK01278 149 G--------FGPLV--------PGFDQV----------------PFGDI------------------EALKAAIT----- 173 (389)
T ss_pred c--------CCCCC--------CCceEe----------------CCCCH------------------HHHHHhhC-----
Confidence 1 00000 111111 13432 45666653
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
.++++||+||+ |+.+|+.++|++|+++|+++|++||++||+|||+|||||+|++|+++++++.||++|+||++++|
T Consensus 174 ---~~~~avivep~-~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t~sK~l~~G 249 (389)
T PRK01278 174 ---PNTAAILIEPI-QGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVTPDIMAVAKGIGGG 249 (389)
T ss_pred ---CCeEEEEEecc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcceeecccCCCCCEEEEehhccCC
Confidence 37999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchheeEeCHHHHhhhcC
Q 005009 695 VIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~~ 713 (719)
+|+|++++++++++.+..
T Consensus 250 -~~ig~~~~~~~~~~~~~~ 267 (389)
T PRK01278 250 -FPLGACLATEEAAKGMTP 267 (389)
T ss_pred -cceEEEEEcHHHHhccCC
Confidence 799999999999988754
|
|
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-43 Score=387.05 Aligned_cols=254 Identities=25% Similarity=0.346 Sum_probs=211.2
Q ss_pred eEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhc
Q 005009 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (719)
Q Consensus 376 p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~ 455 (719)
|.++.+++|. |+||.||+ +||||++|+|+++|||+ ||+|.+|+.+|++++.+... .+.+++..+|+++|++.
T Consensus 23 ~~~~~~~~G~--~~~d~dG~----~~iD~~~~~~~~~lGh~-~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~ 94 (403)
T PRK05093 23 EFIPVRGEGS--RVWDQQGK----EYIDFAGGIAVTALGHC-HPALVKALKEQGEKLWHISN-VFTNEPALRLAKKLIDA 94 (403)
T ss_pred CeeEEEeecC--EEEeCCCC----EEEEcCcCHHhccCCCC-CHHHHHHHHHHHHhcCcccC-ccCCHHHHHHHHHHHhh
Confidence 5678887775 89999999 99999999999999999 99999999999998655432 34688899999999998
Q ss_pred cCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCC
Q 005009 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (719)
Q Consensus 456 ~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~ 535 (719)
.+ .++++|++||+||||+|+|+| |.++.+++. .+|.+||+++++|||+|.+++++++...++..
T Consensus 95 ~~---~~~~~~~~sGseA~e~a~kla-r~~~~~~~~------------~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~ 158 (403)
T PRK05093 95 TF---AERVFFANSGAEANEAAFKLA-RRYACDRHG------------PEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDG 158 (403)
T ss_pred CC---CCEEEEeCchHHHHHHHHHHH-HHHHhhcCC------------CCCCeEEEEcCCcCCchhhhHhhcCChhhhhc
Confidence 75 479999999999999999999 777654322 45789999999999999999998865432221
Q ss_pred CCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 005009 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (719)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~ 615 (719)
..+. + .+..++ +|||. +.+++.+.
T Consensus 159 --------~~~~---~-----~~~~~~----------------~~~d~------------------~~l~~~l~------ 182 (403)
T PRK05093 159 --------FGPK---P-----ADITHV----------------PFNDL------------------AAVKAVID------ 182 (403)
T ss_pred --------CCCC---C-----CCcEEe----------------CCCCH------------------HHHHHHhc------
Confidence 1110 0 011122 24542 45565553
Q ss_pred CCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCCc
Q 005009 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (719)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG~ 695 (719)
+++++||+||+ +++||+++++++|+++|+++|++||+++|+|||++||||+|++++++++++.|||++|||++++|
T Consensus 183 --~~~aaiiiep~-~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~s~sK~l~~G- 258 (403)
T PRK05093 183 --DHTCAVVVEPI-QGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVTPDILTSAKALGGG- 258 (403)
T ss_pred --CCeEEEEEecc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCCEEEecccccCC-
Confidence 36999999998 99999999999999999999999999999999999999999999888999999999999999999
Q ss_pred cchheeEeCHHHHhhhcC
Q 005009 696 IPLAATLATNAVFDSFVG 713 (719)
Q Consensus 696 ~Plsavl~~~~i~~~~~~ 713 (719)
+|+|++++++++++.+..
T Consensus 259 ~rig~vv~~~~i~~~l~~ 276 (403)
T PRK05093 259 FPIGAMLTTAEIASHFKV 276 (403)
T ss_pred cceEEEEEcHHHHhhcCC
Confidence 799999999999998754
|
|
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-43 Score=390.82 Aligned_cols=242 Identities=20% Similarity=0.249 Sum_probs=188.3
Q ss_pred CCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHH
Q 005009 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (719)
Q Consensus 374 ~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~ 453 (719)
..|+++++++|. |+||.||| +||||++|+|++++||+ ||+|++|+++|++++.+. ...+....+|+++|+
T Consensus 29 ~~p~~~~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~q~~~~~~~---~~~~~~~~~la~~l~ 98 (431)
T PRK06209 29 LAPGFIQRGSGA--HVWDVDGN----EYIEYGMGLRAVGLGHA-YPPVVEAVREALQDGCNF---TRPSAIELDAAESFL 98 (431)
T ss_pred CCCeEEEeccCC--EEEeCCCC----EEEEccccccchhcCCC-CHHHHHHHHHHHHhCcCC---CCCCHHHHHHHHHHH
Confidence 457788887775 89999999 99999999999999999 999999999999987542 234556678999999
Q ss_pred hccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEE-eCCcccCccccccccCCCCC
Q 005009 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL-KGSYHGDTLGAMEAQAPSPY 532 (719)
Q Consensus 454 ~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~-~~syHG~t~galslt~~~~~ 532 (719)
+.+|. .++|+|+||||||||+|||+| |+|++| .+|+++ .++|||........+...
T Consensus 99 ~~~p~--~~~v~f~~sGseA~e~AlklA-r~~tgr------------------~~i~~~~~~~~h~~~~~~~g~~~~~-- 155 (431)
T PRK06209 99 ELIDG--ADMVKFCKNGSDATSAAVRLA-RAYTGR------------------DLVARCADHPFFSTDDWFIGTTPMS-- 155 (431)
T ss_pred HhCCc--cceEEEecCHHHHHHHHHHHH-HHHhCC------------------CeEEEeccCccccccccccccCCCC--
Confidence 98874 579999999999999999999 888765 489999 788887422111100000
Q ss_pred CCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCC
Q 005009 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (719)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~ 612 (719)
. ..|. .. ...+.. ++||| .+.+++.+++
T Consensus 156 -~--------------~~~~-----~~--~~~~~~----------~~~~d------------------~~~l~~~l~~-- 183 (431)
T PRK06209 156 -A--------------GIPA-----SV--SALTVT----------FRYND------------------IASLEALFED-- 183 (431)
T ss_pred -C--------------CCCh-----hH--hccccc----------cCCCC------------------HHHHHHHHHh--
Confidence 0 0000 00 000000 12454 2567777763
Q ss_pred CCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccC
Q 005009 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692 (719)
Q Consensus 613 ~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lg 692 (719)
+++++||||+||+ ||+ .+|++||++|+++|++||++||+|||||||++++ +++.+++|+.|||+|+||+||
T Consensus 184 ---~~~~~aavi~Epv-~g~----~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~-~g~~~~~gv~PDi~t~gK~lg 254 (431)
T PRK06209 184 ---HPGRIACVILEPA-TAD----EPQDGFLHEVRRLCHENGALFILDEMITGFRWHM-RGAQKLYGIVPDLSCFGKALG 254 (431)
T ss_pred ---CCCCEEEEEEccc-cCC----CCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCc-chhhHHhCCCcceeeehhhhc
Confidence 3568999999998 886 7889999999999999999999999999998764 344446899999999999999
Q ss_pred CCccchheeEeCHHHHhh
Q 005009 693 GGVIPLAATLATNAVFDS 710 (719)
Q Consensus 693 gG~~Plsavl~~~~i~~~ 710 (719)
|| +|+|++++++++++.
T Consensus 255 gG-~p~~av~~~~~i~~~ 271 (431)
T PRK06209 255 NG-FAVSALAGKREYMEL 271 (431)
T ss_pred CC-cccEEEEEHHHHHhh
Confidence 99 799999999999997
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=383.38 Aligned_cols=259 Identities=22% Similarity=0.326 Sum_probs=214.6
Q ss_pred eEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhc
Q 005009 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (719)
Q Consensus 376 p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~ 455 (719)
|.++++++|. |+||.||+ +||||+|++++.++||+ ||+|++|+++|++++.+... .+.++...+|+++|+++
T Consensus 20 ~~~~~~~~g~--~~~~~~g~----~~lD~~s~~~~~~~Gh~-~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~ 91 (401)
T TIGR01885 20 PVVFSKAEGV--HVWDVEGK----RYLDFLSAYSAVNQGHC-HPKIVKALTEQAQKLTLSSR-AFYNDVFGEFAEYVTKL 91 (401)
T ss_pred CceEEeeecC--EEEeCCCC----EEEEcccCHhhccCCCC-CHHHHHHHHHHHHhcccccc-ccCCHHHHHHHHHHHhh
Confidence 5677787776 79999999 99999999999999999 99999999999999876553 34689999999999999
Q ss_pred cCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccc-cccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDH-EVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 456 ~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~-G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
++ .++++|++||+||||+|||+| |.++.++ |. ..+|.+|++++++|||+|.+++++++...+..
T Consensus 92 ~~---~~~~~~~~SGs~A~e~ai~~a-~~~~~~~~~~-----------~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~ 156 (401)
T TIGR01885 92 FG---YDKVLPMNTGAEAVETAIKLA-RKWGYKVKGI-----------PENQAIIVSAKGNFHGRTLGAISMSTDPDSRT 156 (401)
T ss_pred cC---CCEEEEeCccHHHHHHHHHHH-HHHhhhhcCC-----------CCCCCEEEEECCCcCcccHHHHhCcCCccccc
Confidence 86 479999999999999999999 6765332 21 13478999999999999999999987533221
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
. +++.. | +...+ +|+| .+.+++.+++
T Consensus 157 ~--------~~~~~--~------~~~~~----------------~~~d------------------~~~le~~l~~---- 182 (401)
T TIGR01885 157 N--------FGPYV--P------GFKKI----------------PYNN------------------LEALEEALED---- 182 (401)
T ss_pred c--------cCCCC--C------CceEe----------------CCCC------------------HHHHHHHHHh----
Confidence 1 11110 1 11111 2444 2456777763
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
.++++++||+||+ ++++|++.|+++||++|+++|++||++||+|||+|||||||++|+++++++.||++|+||+++||
T Consensus 183 -~~~~~~avi~E~v-~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~~~~~~~~~~~~di~~~gK~l~~g 260 (401)
T TIGR01885 183 -HGPNVCAFIVEPI-QGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLLCVDHENVKPDIVLLGKALSGG 260 (401)
T ss_pred -cCCCEEEEEEeCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHHhhcCCCCCEEEeeccccCC
Confidence 2468999999998 99999999999999999999999999999999999999999999998999999999999999999
Q ss_pred ccchheeEeCHHHHhhhcC
Q 005009 695 VIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~~ 713 (719)
++|+|++++++++++.+..
T Consensus 261 ~~~ig~v~~~~~i~~~~~~ 279 (401)
T TIGR01885 261 VYPVSAVLADDDVMLTIKP 279 (401)
T ss_pred CCCcEEEEEcHHHHhhccC
Confidence 8899999999999988754
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-43 Score=364.29 Aligned_cols=291 Identities=21% Similarity=0.237 Sum_probs=216.0
Q ss_pred ecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh----ccC
Q 005009 382 RCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ----GVG 457 (719)
Q Consensus 382 ~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~----~~~ 457 (719)
.+.-|.|++|+||| ++||.++++.++.+||| ||.++++++.--..-..++.+...+-+..++++.|.+ .+|
T Consensus 63 EkS~GNYlvDvDGN----~lLDvYsQIsSvplGYn-~P~LvK~a~~p~~~~~lvnRPALg~fP~kd~~~~l~~~ll~~AP 137 (484)
T KOG1405|consen 63 EKSIGNYLVDVDGN----RLLDVYSQISSVPLGYN-NPALVKAAQQPQNATMLVNRPALGNFPPKDFAEKLRQSLLSIAP 137 (484)
T ss_pred hhhcCceEEecCCC----eeehhhhhhcccccCCC-CHHHHHHhcChHHHHHHhccccccCCChhhHHHHHHHHHHhhCc
Confidence 34445589999999 99999999999999999 9999999874222222333333444455666666655 668
Q ss_pred CCCCCeEEEeCChHHHHHHHHHHHHHHhhcc-ccccccccCCC-------ccccCcceEEEEEeCCcccCccccccccCC
Q 005009 458 KGWASRAYFSDNGSTAIEIALKMAFRKFSFD-HEVLVDFLGKD-------TTEKCIELKVLALKGSYHGDTLGAMEAQAP 529 (719)
Q Consensus 458 ~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~-~G~~~~~~~~~-------~~~~~~r~kII~~~~syHG~t~galslt~~ 529 (719)
+| ++.|++..|||+|||+|+|.|+-+|..+ +| ..+++.++ +++......|++|+|+|||+|++++|+|.+
T Consensus 138 KG-~~~v~tm~cGs~aNEnA~K~afiwy~~k~rg-~~~~s~~e~eScm~n~aPg~P~lsvlsF~gaFHGR~~g~lstT~S 215 (484)
T KOG1405|consen 138 KG-QKQVITMLCGSCANENAYKTAFIWYRAKERG-QAGFSAEELESCMINQAPGAPDLSVLSFKGAFHGRTFGSLSTTHS 215 (484)
T ss_pred ch-HHHHHHHhccccccHHHHHHHHHHHHhhcCC-CCCCCHHHHHHHHhcCCCCCCceeeeeeccccccccccccccccC
Confidence 77 7899999999999999999998777643 34 34554444 457778889999999999999999999987
Q ss_pred CCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHh
Q 005009 530 SPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLL 609 (719)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~ 609 (719)
+..++. ..|.|+||.. ++|.. .++-+ +....+....+.|++.+|+.|.
T Consensus 216 KpIHKl--------diPaFdWPiA---------~fP~y-------------kYPLd--env~~N~ked~~Cl~~Ve~li~ 263 (484)
T KOG1405|consen 216 KPIHKL--------DIPAFDWPIA---------PFPRY-------------KYPLD--ENVAENKKEDQGCLAEVEDLIV 263 (484)
T ss_pred cccccc--------CCCCCCCCCC---------CCccc-------------cCChh--hhhhhhhhhhhhHHHHHHHHHH
Confidence 665542 2234555543 33311 00000 0011122334677899999998
Q ss_pred cCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC--Ccceeee
Q 005009 610 QNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC--VPDIACY 687 (719)
Q Consensus 610 ~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv--~PDIvtl 687 (719)
++. .....|||+||||| |++||+...+++|+++||++|+||||.+|+||||||-|-||++|+++||++ .||+|||
T Consensus 264 ~~~--~k~~pVaaiIvEPI-QsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~PpD~vTF 340 (484)
T KOG1405|consen 264 KYR--KKKKPVAAIIVEPI-QSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDSPPDVVTF 340 (484)
T ss_pred HHh--hcCCCeEEEEeech-hccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCCCCccceeh
Confidence 763 23458999999998 999999999999999999999999999999999999999999999999998 5999999
Q ss_pred hhcc-CCCccchheeEeCH--HHHhhhcCC
Q 005009 688 GKLL-TGGVIPLAATLATN--AVFDSFVGD 714 (719)
Q Consensus 688 gK~L-ggG~~Plsavl~~~--~i~~~~~~~ 714 (719)
+|-+ +|||+---...-++ .+++.++++
T Consensus 341 SKK~q~gGffh~~~frpn~pYrifNTWmGd 370 (484)
T KOG1405|consen 341 SKKFQTGGFFHDEEFRPNEPYRIFNTWMGD 370 (484)
T ss_pred hhhhhcCccccCcccCCCchHHHhhhhcCC
Confidence 9998 67875433333332 455555554
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-41 Score=366.89 Aligned_cols=249 Identities=24% Similarity=0.290 Sum_probs=206.7
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. |+||.||+ +||||+|++|+++|||+ ||+|++|+++|++++.+.+ ..+.++...+|+++|++
T Consensus 11 ~~~~~~~~~G~--~~~d~~G~----~~lD~~s~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~l~~ 82 (377)
T PRK02936 11 FPIDIVKGKGT--KVTDNNGK----TYLDFTSGIAVCNLGHC-HPTVTKAVQEQLDDIWHVS-NLFTNSLQEEVASLLAE 82 (377)
T ss_pred CCceEEEeecC--EEEeCCCC----EEEECCcchhhccCCCC-CHHHHHHHHHHHHhccccc-cccCCHHHHHHHHHHHh
Confidence 46678887776 79999999 99999999999999999 9999999999999875543 23568889999999998
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
..+ .++++|++||+||||+|+|+| |.++++ .+||+++++|||++.+++++++...++.
T Consensus 83 ~~~---~~~~~~~~sG~~a~~~A~~~a-~~~~g~------------------~~vi~~~~~~Hg~~~~~~~~~~~~~~~~ 140 (377)
T PRK02936 83 NSA---GDLVFFCNSGAEANEAALKLA-RKHTGK------------------SKIVTFEQSFHGRTFGTMSATGQEKIKE 140 (377)
T ss_pred cCC---CCEEEEeCCcHHHHHHHHHHH-HHhcCC------------------CeEEEECCCcCCCcHHhhhccCCccccc
Confidence 766 368999999999999999999 666543 5899999999999999999887543322
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
. +.+.. + +...+ +|+|. +.+++.+.
T Consensus 141 ~--------~~~~~--~------~~~~~----------------~~~d~------------------~~l~~~~~----- 165 (377)
T PRK02936 141 G--------FGPLL--P------GFTHV----------------PFNDI------------------KALKEVMN----- 165 (377)
T ss_pred c--------CCCCC--C------CceEe----------------CCCCH------------------HHHHHhcc-----
Confidence 1 11110 0 11111 13432 44555553
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
+++++||+||+ |+++|+++++++|+++|+++|++||+++|+|||+|||||+|++|+++++++.||++|+||++++|
T Consensus 166 ---~~~~~ii~e~i-~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l~~G 241 (377)
T PRK02936 166 ---EEVAAVMLEVV-QGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLDPDIVTVAKGLGNG 241 (377)
T ss_pred ---CCeEEEEEecc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhhCCCCcEEEEcccccCC
Confidence 36899999998 99999999999999999999999999999999999999999999988999999999999999999
Q ss_pred ccchheeEeCHHHHhhhcC
Q 005009 695 VIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~~ 713 (719)
+|+|++++++++++.+..
T Consensus 242 -~~ig~v~~~~~~~~~~~~ 259 (377)
T PRK02936 242 -IPVGAMIGKKELGTAFGP 259 (377)
T ss_pred -CccEEEEEcHHHHhhccC
Confidence 799999999999998854
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-41 Score=370.00 Aligned_cols=255 Identities=20% Similarity=0.293 Sum_probs=210.5
Q ss_pred eEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhc
Q 005009 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (719)
Q Consensus 376 p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~ 455 (719)
|.++++++|. |+||.||+ +|||+++|+++.++||+ ||+|.+|+++|++++.+.+. .+.++...+|+++|+++
T Consensus 24 ~~~~~~~~G~--~~~d~~g~----~~lD~~~~~~~~~~Gh~-~~~i~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~ 95 (401)
T PRK00854 24 DVVLTRGEGV--WVWDTDGN----RYLDCLSAYSAVNQGHC-HPKILAAMVEQAGRLTLTSR-AFRNDQLAPLYEELAAL 95 (401)
T ss_pred CceEEeeeeC--EEEECCCC----EEEEcCcchhhccCCCC-CHHHHHHHHHHHhhcccccc-ccCCHHHHHHHHHHHhh
Confidence 5577787765 89999999 99999999999999999 99999999999999887653 45688999999999998
Q ss_pred cCCCCCCeEEEeCChHHHHHHHHHHHHHHhhc-cccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSF-DHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 456 ~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~-~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
.+ .++++|++||+||||+|||+| |.++. ++|. ..+|.+||++.++|||+|.+++++++.+.++.
T Consensus 96 ~~---~~~~~~~~SGs~A~e~al~~a-~~~~~~~~g~-----------~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~ 160 (401)
T PRK00854 96 TG---SHKVLPMNSGAEAVETAIKAV-RKWGYEVKGV-----------PEGQAEIIVCADNFHGRTLSIVGFSTDPDARG 160 (401)
T ss_pred CC---CCEEEEeCCcHHHHHHHHHHH-HHHHHhccCC-----------CCCCceEEEECCCcCCccHHHHhccCCccccc
Confidence 87 369999999999999999999 66642 2221 13467999999999999999888876433222
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
. +.++ .+ +..++ +|+|. +.+++.+.
T Consensus 161 ~--------~~~~--~~------~~~~~----------------~~~d~------------------~~le~~i~----- 185 (401)
T PRK00854 161 G--------FGPF--TP------GFRVV----------------PFGDA------------------EALEAAIT----- 185 (401)
T ss_pred c--------CCCC--CC------CeEEe----------------CCCCH------------------HHHHHHhC-----
Confidence 1 1110 01 11222 24442 45666663
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
+++++||+||+ ++.+|.+.++++||++|+++|++||++||+|||||||||+|++|+.+++|+.||++++||+|+||
T Consensus 186 ---~~~~aii~e~~-~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~~~~~~g~~~D~~~~~K~l~gg 261 (401)
T PRK00854 186 ---PNTVAFLVEPI-QGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLLAEEHEGIEADVTLIGKALSGG 261 (401)
T ss_pred ---CCeEEEEEccc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchHhHHhhcCCCCCEEEecccccCC
Confidence 36899999998 99999999999999999999999999999999999999999999888999999999999999999
Q ss_pred ccchheeEeCHHHHhhhc
Q 005009 695 VIPLAATLATNAVFDSFV 712 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~ 712 (719)
++|+|++++++++++.+.
T Consensus 262 ~~~ig~v~~~~~~~~~l~ 279 (401)
T PRK00854 262 FYPVSAVLSNSEVLGVLK 279 (401)
T ss_pred ccCeEEEEEcHHHHhccc
Confidence 889999999999999875
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-40 Score=362.96 Aligned_cols=258 Identities=21% Similarity=0.291 Sum_probs=208.7
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++.+++|. |+||.||+ +||||++|+++.++||+ ||+|++|+++|++++.+.+. .+.++...+++++|++
T Consensus 13 ~~~~~~~~~G~--~~~d~dg~----~~lD~~~~~~~~~~Gh~-~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~ 84 (400)
T PTZ00125 13 LPVVLKRGKGV--FVWDVEGK----KYYDFLSAYSAVNQGHC-HPKILAALINQAQKLTLTSR-AFYNDVLGLAEKYITD 84 (400)
T ss_pred CCccEEeeecC--EEEeCCCC----EEEEcccCHhhccCCcC-CHHHHHHHHHHHHhcccccc-cccCHHHHHHHHHHHh
Confidence 35677787776 89999999 99999999999999999 99999999999998887653 3457788888888888
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhh-ccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFS-FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~-~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~ 533 (719)
..+ .++++|++||+||||+|||++ |.++ .++|. ..++.+||+++++|||++.+++++++...+.
T Consensus 85 ~~~---~~~~~~~~SGs~A~e~al~~~-~~~~~~~~~~-----------~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~ 149 (400)
T PTZ00125 85 LFG---YDKVLPMNSGAEAGETALKFA-RKWGYEVKGI-----------PENQAKIIFCNGNFSGRTIGACSASTDPKCY 149 (400)
T ss_pred CCC---CCEEEEeCCcHHHHHHHHHHH-HHHHHhccCC-----------CCCCCeEEEECCCcCCccHHHHhhcCCcchh
Confidence 765 579999999999999999999 5442 22221 0246799999999999999999988643221
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
. .+.+.. ++...+ +++| .+.+++.+.
T Consensus 150 ~--------~~~~~~--------~~~~~~----------------~~~d------------------~~~le~~l~---- 175 (400)
T PTZ00125 150 N--------NFGPFV--------PGFELV----------------DYND------------------VEALEKLLQ---- 175 (400)
T ss_pred c--------cCCCCC--------CCceEe----------------CCCC------------------HHHHHHHhC----
Confidence 1 111100 011111 1333 255666664
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCC
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lgg 693 (719)
.+++++|++||+ |+.+|++.++++|+++|+++|++||++||+|||++||||+|++|+.+++++.||++|+||++++
T Consensus 176 ---~~~~~~v~~ep~-~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~~~~~~~~pd~~~~sK~l~~ 251 (400)
T PTZ00125 176 ---DPNVAAFIVEPI-QGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGVKPDIVLLGKALSG 251 (400)
T ss_pred ---CCCeEEEEEcCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhHHHhcCCCCCEEEEcccccC
Confidence 247999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchheeEeCHHHHhhhcC
Q 005009 694 GVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~~ 713 (719)
|+.|+|++++++++++.+..
T Consensus 252 g~~~ig~v~~~~~~~~~~~~ 271 (400)
T PTZ00125 252 GLYPISAVLANDDVMLVIKP 271 (400)
T ss_pred CCcCcEEEEEcHHHHhhccC
Confidence 97799999999999998753
|
|
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-40 Score=362.99 Aligned_cols=251 Identities=22% Similarity=0.284 Sum_probs=207.0
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. |+||.||+ +||||.+|+++++|||+ ||+|.+|+++|++++.+.. ..+.++...+|+++|++
T Consensus 25 ~~~~~~~~~G~--~~~d~dg~----~~lD~~s~~~~~~lG~~-~p~v~~ai~~~~~~~~~~~-~~~~~~~~~~la~~l~~ 96 (398)
T PRK03244 25 PPLALVRGEGA--VVWDVDGK----EYLDLLGGIAVNALGHA-HPAVVEAVTRQLATLGHVS-NLFATEPQIALAERLVE 96 (398)
T ss_pred CCceEEEeeec--EEEECCCC----EEEECCcCHhhccCCCC-CHHHHHHHHHHHHhccCcc-CccCCHHHHHHHHHHHH
Confidence 46788887775 79999999 99999999999999999 9999999999999977643 24567888999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
..+....++++|++||+||+++|+|++ +. ++ |.+||.++++|||.+.+++++++...+..
T Consensus 97 ~~~~~~~~~v~~~~sgsea~~~al~~~-~~-~g------------------~~~ii~~~~~yhg~~~~~~~~~~~~~~~~ 156 (398)
T PRK03244 97 LLGAPEGGRVFFCNSGAEANEAAFKLA-RL-TG------------------RTKIVAAEGGFHGRTMGALALTGQPAKRA 156 (398)
T ss_pred hCCCCCCCEEEEeCchHHHHHHHHHHH-HH-HC------------------CCeEEEECCCcCCccHHHHhccCCccccc
Confidence 877432469999999999999999999 44 22 35899999999999999998887443222
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
. + .+ +. .+...+ +|+| .+.+++.+.
T Consensus 157 ~----~----~~-~~-------~~~~~~----------------~~~d------------------~~~l~~~~~----- 181 (398)
T PRK03244 157 P----F----EP-LP-------GGVEHV----------------PYGD------------------VDALAAAVD----- 181 (398)
T ss_pred C----C----CC-CC-------CCceEe----------------CCCC------------------HHHHHHhhc-----
Confidence 1 0 00 00 011111 1333 134555542
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
+++++||+||+ |+.+|+++|+++|+++|+++|++||++||+|||+|||||+|++|+++++++.||++||||+||+|
T Consensus 182 ---~~~~aviiep~-~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pDi~t~sK~l~~G 257 (398)
T PRK03244 182 ---DDTAAVFLEPI-QGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHDGVTPDVVTLAKGLGGG 257 (398)
T ss_pred ---CCeEEEEEecc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHHhhhhhCCCCCEEEEchhhhCC
Confidence 47999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchheeEeCHHHHhhhcC
Q 005009 695 VIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~~ 713 (719)
+|+|++++++++++.|..
T Consensus 258 -~~ig~~~~~~~~~~~~~~ 275 (398)
T PRK03244 258 -LPIGACLAFGPAADLLTP 275 (398)
T ss_pred -cccEEEEEcHHHHhhccC
Confidence 799999999999998854
|
|
| >COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-40 Score=332.00 Aligned_cols=198 Identities=31% Similarity=0.411 Sum_probs=172.4
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCC---ChHHHHHHhcCCCccccCCCccccc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHD---SDSRFLFTKLPSLSLRRNFPSSLIL 112 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~---~d~~~~~~~~~~~~~~~~~~~~~~~ 112 (719)
||+.|||||||||||||++|++|+++++ ++|+++.+|||||+|..+. +|+.++.+.. +
T Consensus 1 m~~~~fVtGTDT~VGKTv~S~aL~~~l~-----~~g~~~~~~KPVqsG~~~~~~~~D~~~l~~~~-~------------- 61 (223)
T COG0132 1 MMKRFFVTGTDTGVGKTVVSAALAQALK-----QQGYSVAGYKPVQTGSEETAENSDALVLQRLS-G------------- 61 (223)
T ss_pred CCceEEEEeCCCCccHHHHHHHHHHHHH-----hCCCeeEEECceeeCCCCCCCCchHHHHHHhc-C-------------
Confidence 5789999999999999999999999994 8999999999999998765 5777666553 2
Q ss_pred cchhhhhhHHHhhhhccCCCCCCCCccCCcccccccccccccccCCCCCccccccccceeecccCcChHHHHhHhcCCCC
Q 005009 113 SNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVV 192 (719)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~ 192 (719)
.+++|+. +|+|.|++|+|||+|++.| |+.+
T Consensus 62 ------------------~~~~~~~-------------------------------~~py~f~~P~sPhlAa~~e-g~~I 91 (223)
T COG0132 62 ------------------LDLSYEL-------------------------------INPYRFKEPLSPHLAAELE-GRTI 91 (223)
T ss_pred ------------------CCccccc-------------------------------ccceecCCCCCcHHHHhhc-CCcc
Confidence 2333333 8999999999999999999 9999
Q ss_pred CHHHHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHH
Q 005009 193 GDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYE 272 (719)
Q Consensus 193 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~ 272 (719)
+.+++...+.++.+. +|+|||||||||++|++++.+.+||++.+++|||||+..++|||||++++++
T Consensus 92 ~~~~l~~~l~~l~~~-------------~d~vlVEGAGGl~vPl~~~~~~~D~~~~~~lpvILV~~~~LGtINHtlLt~e 158 (223)
T COG0132 92 DLEKLSQGLRQLLKK-------------YDLVLVEGAGGLLVPLTEEYTFADLAVQLQLPVILVVGIKLGTINHTLLTVE 158 (223)
T ss_pred cHHHHHHHHHhhhcc-------------cCEEEEeCCCceeeecCCcccHHHHHHHcCCCEEEEecCCccHHHHHHHHHH
Confidence 999999988887653 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCcEEEEEEccCCC--CC----HHHHHHhhcCCCcEEe-cCCCCCCC
Q 005009 273 SLKLRGYDVVAVVFEDHGL--VN----EVPLMSYLRNRVPVLV-LPPLPQDS 317 (719)
Q Consensus 273 ~l~~~~~~v~gvi~N~~~~--~~----~~~l~~~~~~~~pvlg-lP~~~~~~ 317 (719)
+++++|+++.|||+|+... .. ...+++.+ +.|++| +|+.++..
T Consensus 159 al~~~gl~l~G~I~n~~~~~~~~~~~~~~~l~~~~--~~p~~g~~p~~~~~~ 208 (223)
T COG0132 159 ALRARGLPLAGWVANGINPELDHYAEINATLLKRI--GAPLLGIIPYLPESE 208 (223)
T ss_pred HHHHCCCCEEEEEEccCCCchhHHHHHHHHHHHhc--CCCccccccCCcccc
Confidence 9999999999999999822 22 22344455 999999 99987644
|
|
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-38 Score=347.36 Aligned_cols=279 Identities=28% Similarity=0.437 Sum_probs=223.4
Q ss_pred hhhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhccc
Q 005009 355 KRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGH 434 (719)
Q Consensus 355 e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~ 434 (719)
+++++.+|++++ . ...|.++++++|. ++||.||+ +||||++|+++.++||+ ||+|++|+++|+++..+
T Consensus 3 ~~~~~~~~~~~~--~---~~~~~~~~~~~g~--~~~d~dG~----~~id~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~ 70 (413)
T cd00610 3 ERDRKVLWHGYT--V---RPYPLVIVRAEGA--YLYDVDGN----RYLDFLSGIGVLNLGHN-HPEVVEALKEQLAKLTH 70 (413)
T ss_pred chhhhhcccccc--C---CCCCceEEeeecC--EEEeCCCC----EEEEcCccHHhhccCCC-CHHHHHHHHHHHHhCcC
Confidence 456778899886 1 2467889887776 79999999 99999999999999999 99999999999987665
Q ss_pred ccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeC
Q 005009 435 VMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKG 514 (719)
Q Consensus 435 ~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~ 514 (719)
.....+.++...+|+++|++..|.+ .++++|++||+|||+.|++++ |.++++ .+||.+++
T Consensus 71 ~~~~~~~~~~~~~l~~~l~~~~~~~-~~~v~~~~sgsea~~~al~~~-~~~~~~------------------~~ii~~~~ 130 (413)
T cd00610 71 FSLGFFYNEPAVELAELLLALTPEG-LDKVFFVNSGTEAVEAALKLA-RAYTGR------------------KKIISFEG 130 (413)
T ss_pred ccCcccCCHHHHHHHHHHHHhCCCC-CCEEEEcCcHHHHHHHHHHHH-HHHcCC------------------CeEEEECC
Confidence 4432236889999999999998743 589999999999999999999 666543 48999999
Q ss_pred CcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCch
Q 005009 515 SYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSS 594 (719)
Q Consensus 515 syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~ 594 (719)
+|||++.+++++++...++.. +.+.. .....+|.+.+++. +
T Consensus 131 ~yhg~~~~~~~~~~~~~~~~~------------~~~~~----~~~~~~~~~~~~~~-----------------------~ 171 (413)
T cd00610 131 AYHGRTLGALSLTGSKKYRGG------------FGPLL----PGVLHVPYPYRYRP-----------------------P 171 (413)
T ss_pred CcCCccHHHHHhcCCcccccc------------CCCCC----CCcEEeCCCccccc-----------------------h
Confidence 999999999998865433321 00000 01122222211100 0
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccc
Q 005009 595 DLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT 674 (719)
Q Consensus 595 ~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a 674 (719)
.......+.+++.+.+ +++++++||+||+ ++.+|.+.++++|+++|+++|++||++||+|||++||||+|.+++
T Consensus 172 ~~~~~d~~~l~~~l~~-----~~~~~~~vi~~p~-~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~~ 245 (413)
T cd00610 172 AELADDLEALEEALEE-----HPEEVAAVIVEPI-QGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFA 245 (413)
T ss_pred hhHHHHHHHHHHHHhc-----CCCCEEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhh
Confidence 0011124667777763 3568999999997 999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcceeeehhccCCCccchheeEeCHHHHhhh
Q 005009 675 ADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 675 ~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~ 711 (719)
++++++.||++|+||++++| +|+|++++++++++.+
T Consensus 246 ~~~~~~~~d~~t~sK~l~~g-~~~g~~~~~~~~~~~~ 281 (413)
T cd00610 246 FEHFGVEPDIVTLGKGLGGG-LPLGAVLGREEIMDAF 281 (413)
T ss_pred HhhcCCCCCeEEEcccccCc-cccEEEEEcHHHHHhh
Confidence 99999999999999999999 8999999999999986
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-38 Score=344.17 Aligned_cols=247 Identities=23% Similarity=0.272 Sum_probs=200.3
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. ||||.||+ +|||+.||+++.++|| ||+|++|+.+|++++.+.. ..+.++...+++++|+.
T Consensus 11 ~~~~~~~~~G~--~l~d~dg~----~~lD~~s~~~~~~lG~--~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~l~~ 81 (375)
T PRK04260 11 AAIEFVKAEGN--YLIDTDGK----KYLDFSSGIGVTNLGF--HPQVQQALQKQAGLIWHSP-NLYLNSLQEEVAQKLIG 81 (375)
T ss_pred CCceEEEeeeC--EEEeCCCC----EEEECCCCcccccCCC--CHHHHHHHHHHHHhcCccc-CccCCHHHHHHHHHHhc
Confidence 36678887776 89999999 9999999999999999 6899999999999865433 23457778888888865
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
. + ..+++|++||+|||+.|+|+| |.+++ |.+||+++++|||++.+++++++...++.
T Consensus 82 ~-~---~~~~~~~~SGseA~~~Al~~a-r~~~~------------------~~~vv~~~~~yHg~~~~~~~~~~~~~~~~ 138 (375)
T PRK04260 82 D-K---DYLAFFCNSGAEANEAAIKIA-RKATG------------------KQEIITFQNSFHGRTFGSMSATGQDKIKD 138 (375)
T ss_pred C-c---CCEEEEcCccHHHHHHHHHHH-HHhcC------------------CCeEEEECCCcCcccHHHHhccCCcccCC
Confidence 3 1 247899999999999999999 66644 35899999999999999999987543332
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
. +++. ++. .+. .+|+| .+.+++.+.
T Consensus 139 ~--------~~~~--~~~-----------~~~-----------~~~~d------------------l~~l~~~l~----- 163 (375)
T PRK04260 139 G--------FGDG--VPH-----------FSY-----------AIFND------------------LNSVKALVN----- 163 (375)
T ss_pred C--------CCCC--CCC-----------eEE-----------eCCCC------------------HHHHHHhcC-----
Confidence 1 1110 000 000 01333 244555442
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
+++++|++||+ ++++|++.++++|+++++++|+++|+++|+|||++||||+|.+|.++++++.|||+||||+||+|
T Consensus 164 ---~~~a~vi~e~v-~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~~pdi~t~sK~l~~G 239 (375)
T PRK04260 164 ---KNTAAVMLELV-QGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIEPDIFTLAKGLANG 239 (375)
T ss_pred ---CCeEEEEECCe-ECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCCCCCEEEecccccCC
Confidence 46899999998 99999999999999999999999999999999999999999999998999999999999999999
Q ss_pred ccchheeEeCHHHHhhhcC
Q 005009 695 VIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~~ 713 (719)
+|+|++++++++++.|..
T Consensus 240 -~~ig~~~~~~~~~~~~~~ 257 (375)
T PRK04260 240 -VPVGAMLAKSSLGGAFGY 257 (375)
T ss_pred -cceEEEEEcHHHHhhcCC
Confidence 799999999999998853
|
|
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-38 Score=344.81 Aligned_cols=253 Identities=25% Similarity=0.364 Sum_probs=209.3
Q ss_pred eEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhc
Q 005009 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (719)
Q Consensus 376 p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~ 455 (719)
|.++++++|. |+||.||+ +|||+.+|++++++||+ ||+|.+|+++|+++..+.. ..+.++...+|+++|++.
T Consensus 22 ~~~~~~~~G~--~~~d~dg~----~~iD~~~g~~~~~lG~~-~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~l~~~ 93 (396)
T PRK02627 22 PIAFVRGEGA--RLWDDDGK----EYLDFLAGIAVNNLGHC-HPKLVEAIQEQAAKLIHTS-NLYYIEPQEELAEKLVEL 93 (396)
T ss_pred CceEEeeeeC--EEEeCCCC----EEEECCccHHhccCCCC-CHHHHHHHHHHHhhccccc-cccCCHHHHHHHHHHHhh
Confidence 6688887776 79999999 99999999999999999 9999999999999876543 235688899999999998
Q ss_pred cCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCC
Q 005009 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (719)
Q Consensus 456 ~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~ 535 (719)
.+ .++++|++||+||++.|+|++ +.++++.+ .++.+|++++++|||.+..++++++...++..
T Consensus 94 ~~---~~~v~~~~gg~eA~~~al~~a-~~~~~~~~-------------~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~ 156 (396)
T PRK02627 94 SG---MDKVFFCNSGAEANEAAIKLA-RKYGHKKG-------------IEKPEIITAENSFHGRTLATLSATGQPKYQEG 156 (396)
T ss_pred cC---CCEEEECCCcHHHHHHHHHHH-HHHhcccC-------------CCCCeEEEECCCcCcccHHHHHhcCCcccccc
Confidence 65 589999999999999999999 77766542 23478999999999999999998865433221
Q ss_pred CCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 005009 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (719)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~ 615 (719)
..+. .++...+ +|+| .+.+++.+.
T Consensus 157 --------~~~~--------~~~~~~~----------------~~~d------------------~~~l~~~i~------ 180 (396)
T PRK02627 157 --------FEPL--------VEGFIYV----------------PFND------------------IEALKAAIT------ 180 (396)
T ss_pred --------CCCC--------CCCceEe----------------CCCC------------------HHHHHHhcC------
Confidence 0000 0111111 1333 244555552
Q ss_pred CCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCCc
Q 005009 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (719)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG~ 695 (719)
+++++||+||+ |+.+|+.+++++|+++|+++|++||++||+|||++||||+|++++++++++.||++||||++++|
T Consensus 181 --~~~~~vii~p~-~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~~~~~~~~~~pdi~t~sK~~~~G- 256 (396)
T PRK02627 181 --DKTAAVMLEPI-QGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAYQHYGIEPDIMTLAKGLGGG- 256 (396)
T ss_pred --CCeEEEEEecc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCceeeehhcCCCCCEEEEcchhhCC-
Confidence 47899999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchheeEeCHHHHhhhcC
Q 005009 696 IPLAATLATNAVFDSFVG 713 (719)
Q Consensus 696 ~Plsavl~~~~i~~~~~~ 713 (719)
+|+|++++++++++.+..
T Consensus 257 ~rig~~~~~~~~~~~~~~ 274 (396)
T PRK02627 257 VPIGAVLAKEKVADVFTP 274 (396)
T ss_pred cccEEEEEcHHHHhccCC
Confidence 799999999999988853
|
|
| >PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=298.61 Aligned_cols=196 Identities=34% Similarity=0.457 Sum_probs=162.7
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCCChHHHHHHhcCCCccccCCCccccccchhh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSIL 117 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (719)
++|||+||+|+||||+||+||+++|. ++|.+|+|||||++|...+.|..++.+.+ ++
T Consensus 1 r~i~I~~t~t~vGKT~vslgL~~~l~-----~~g~~v~~~KPi~~~~~~d~d~~~~~~~~-~~----------------- 57 (199)
T PF13500_consen 1 RTIFITGTDTGVGKTVVSLGLARALR-----RRGIKVGYFKPIQTGPEDDEDAELIRELF-GL----------------- 57 (199)
T ss_dssp -EEEEEESSSSSSHHHHHHHHHHHHH-----HTTSEEEEEEEEEESCCCSSHHHHHHHHC-CT-----------------
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHH-----hCCCceEEEeeeEecCCCCchHHHHHHHh-CC-----------------
Confidence 58999999999999999999999995 89999999999999998888999887664 22
Q ss_pred hhhHHHhhhhccCCCCCCCCccCCcccccccccccccccCCCCCccccccccceeecccCcChHHHHhHhcCCCCCHHHH
Q 005009 118 FSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKV 197 (719)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~~v 197 (719)
+. .....+++.|++|++|+++++.+ +..+.++++
T Consensus 58 --------------~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i 91 (199)
T PF13500_consen 58 --------------SE-------------------------------PPDDPSPYTFDEPASPHLAAELE-GVDIDLERI 91 (199)
T ss_dssp --------------CC-------------------------------CHHHHECEEESSSS-HHHHHHHH-T----HHHH
T ss_pred --------------Cc-------------------------------ccccccccccCcccCHHHHhhcc-CCcccHHHH
Confidence 00 12346899999999999999998 777777777
Q ss_pred HHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHhC
Q 005009 198 IETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLR 277 (719)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~ 277 (719)
+ ++++.+. +|++||||+||+++|...+.+|+|||+.|++|||||++.++|+++|+++++++++.+
T Consensus 92 ~--~~~l~~~-------------~D~vlVEGag~~~~~~~~~~~n~dia~~L~a~vIlV~~~~~g~i~~~l~~~~~~~~~ 156 (199)
T PF13500_consen 92 I--YKELAEE-------------YDVVLVEGAGGLMVPIFSGDLNADIAKALGAPVILVASGRLGTINHTLLTIEALKQR 156 (199)
T ss_dssp H--HHHCHTT-------------TCEEEEEESSSTTSECCTTEEHHHHHHHHT-EEEEEEESSTTHHHHHHHHHHHHHCT
T ss_pred H--HHHHhhc-------------CCEEEEeCCcccCcccccChHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHHHHhc
Confidence 6 5555543 999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEccC-CCCCHHHHHHhhcCCCcEEe-cCCCCCCCcc
Q 005009 278 GYDVVAVVFEDH-GLVNEVPLMSYLRNRVPVLV-LPPLPQDSSN 319 (719)
Q Consensus 278 ~~~v~gvi~N~~-~~~~~~~l~~~~~~~~pvlg-lP~~~~~~~~ 319 (719)
|+++.|||+|++ ..++.++++++. ++||+| ||+.+.++++
T Consensus 157 g~~v~GvI~N~~~~~~~~~~l~~~~--~i~vlg~iP~~~~L~~p 198 (199)
T PF13500_consen 157 GIRVLGVILNRVPEPENLEALREKS--GIPVLGVIPEDPDLSAP 198 (199)
T ss_dssp TS-EEEEEEEECTCCHHHHHHHHHH--CCEECE---SSTT----
T ss_pred CCCEEEEEEECCCCHHHHHHHHHhC--CCCEEEECCCCcccccC
Confidence 999999999998 556888888888 899999 9999998765
|
... |
| >PRK12374 putative dithiobiotin synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-31 Score=276.58 Aligned_cols=202 Identities=21% Similarity=0.202 Sum_probs=162.2
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCC------CChHHHHHHhcCCCccccCCCcc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPH------DSDSRFLFTKLPSLSLRRNFPSS 109 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~------~~d~~~~~~~~~~~~~~~~~~~~ 109 (719)
|+++|||+||+|++|||+||++|+++|. ++|++|+|||||++|+.. +.|+.++.+.+ +
T Consensus 1 m~~~ifIt~t~t~vGKT~vt~~L~~~l~-----~~g~~v~~~KPi~~g~~~~~~~~~~~D~~~l~~~~-~---------- 64 (231)
T PRK12374 1 MLKRFFITGTDTSVGKTVVSRALLQALA-----SQGKTVAGYKPVAKGSKETPEGLRNKDALVLQSVS-S---------- 64 (231)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHH-----HCCCeEEEECccccCCccCCCCCchHHHHHHHHhc-C----------
Confidence 4568999999999999999999999995 889999999999998632 24555554432 1
Q ss_pred ccccchhhhhhHHHhhhhccCCCCCCCCccCCcccccccccccccccCCCCCccccccccceeecccCcChHHHHhHhcC
Q 005009 110 LILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESG 189 (719)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~ 189 (719)
.+.| +..++||.|+.+. +++.+ +
T Consensus 65 ---------------------~~~~-------------------------------~~~~~p~~~~~~~----a~~~~-~ 87 (231)
T PRK12374 65 ---------------------IELP-------------------------------YEAVNPIALSEEE----SSVAH-S 87 (231)
T ss_pred ---------------------CCCC-------------------------------HHhccCeecCCCc----ChHHc-C
Confidence 1122 2336788776653 45566 7
Q ss_pred CCCCHHHHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHH
Q 005009 190 GVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTIS 269 (719)
Q Consensus 190 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~ 269 (719)
..++.++|.+.++++.+. +|+|||||+||+++|++......|++..+++|+|||++.++|++||+++
T Consensus 88 ~~i~~~~i~~~~~~l~~~-------------~D~VlVEGaGgl~~p~~~~~~~~d~~~~~~~pvilV~~~~lg~in~~lL 154 (231)
T PRK12374 88 CPINYTLMSNGLANLSEK-------------VDHVVVEGTGGWRSLMNDLRPLSEWVVQEQLPVLMVVGIQEGCINHALL 154 (231)
T ss_pred CcCCHHHHHHHHHHHHhh-------------CCEEEEECCCCcceeccCcccHHHHHHHhCCCEEEEECCCcChHHHHHH
Confidence 778889999999876544 9999999999999999888899999999999999999999999999999
Q ss_pred HHHHHHhCCCcEEEEEEccCCCC------CHHHHHHhhcCCCcEEe-cCCCCCCCcchhhhhh
Q 005009 270 AYESLKLRGYDVVAVVFEDHGLV------NEVPLMSYLRNRVPVLV-LPPLPQDSSNDLMEWF 325 (719)
Q Consensus 270 ~~~~l~~~~~~v~gvi~N~~~~~------~~~~l~~~~~~~~pvlg-lP~~~~~~~~~~~~~l 325 (719)
+++.++.+|++++|||+|++... +...+.+.. ++|++| ||+.+.++..++.+++
T Consensus 155 t~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~l~~~~--~~~~lg~iP~~~~~~~~~~~~~l 215 (231)
T PRK12374 155 TAQAIANDGLPLIGWVANRINPGLAHYAEIIDVLGKKL--PAPLIGELPYLPRAEQRELGQYI 215 (231)
T ss_pred HHHHHHhCCCcEEEEEEeCccCchhhhhhHHHHHHHhc--CCCEEEEeCCCCCCChHHHHhhc
Confidence 99999999999999999998322 233444444 899999 9999876655555554
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-31 Score=288.16 Aligned_cols=254 Identities=28% Similarity=0.402 Sum_probs=204.9
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. ++||.||+ +||||++|+|++++||+ ||.|.+|+.++++++.+.. ..+.++...+|+++|++
T Consensus 9 ~~~~~~~~~g~--~~~~~~g~----~~id~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~ 80 (379)
T TIGR00707 9 LPVKIVRGKGA--YVYDVNGK----EYLDFVAGIAVNSLGHA-HPKLVEALKEQLEKLVHVS-NLYYTEPQEELAEKLVE 80 (379)
T ss_pred CCccEEEeecC--EEEeCCCC----EEEEcCcchhhccCCCC-CHHHHHHHHHHHhhccccc-cccCCHHHHHHHHHHHh
Confidence 46788888776 79999999 99999999999999999 9999999999999876543 23467889999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
..+ .+++++++||+||++.|++++ +.+++..| +.+.+|++++.+|||.+..+...++...+..
T Consensus 81 ~~g---~~~~~~~~sg~~a~~~a~~~~-~~~~~~~~-------------~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~ 143 (379)
T TIGR00707 81 HSG---ADRVFFCNSGAEANEAALKLA-RKYTGDKG-------------KEKKKIIAFENSFHGRTMGALSATGQPKYQK 143 (379)
T ss_pred hCC---CCEEEEeCCcHHHHHHHHHHH-HHHhhccC-------------CCCCeEEEECCCcCCccHHHHHhcCChhhhc
Confidence 987 469999999999999999998 66655221 2346899999999999988887775432211
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
. + .+.. ..... ++||| .+.+++.+.
T Consensus 144 ~----~----~~~~--------~~~~~----------------~~~~d------------------~~~l~~~~~----- 168 (379)
T TIGR00707 144 G----F----EPLV--------PGFSY----------------APYND------------------IESLKKAID----- 168 (379)
T ss_pred c----C----CCCC--------CCcee----------------eCCCC------------------HHHHHHHhh-----
Confidence 0 0 0000 00000 11333 244555554
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
.++.+|++||+ ++.+|...++.+++++|.++|++||+++|+||+++|||++|+++.++.+++.||++|+||++++|
T Consensus 169 ---~~~~~v~~~p~-~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~~~~~~~~~~~d~~t~sK~~~~G 244 (379)
T TIGR00707 169 ---DETAAVIVEPI-QGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFFAYEHYGIEPDIITLAKGLGGG 244 (379)
T ss_pred ---hCeeEEEEEcc-ccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhhHHhcCCCCCEEEEcccccCC
Confidence 25789999998 99999988899999999999999999999999999999999887777889999999999999999
Q ss_pred ccchheeEeCHHHHhhhcC
Q 005009 695 VIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~~ 713 (719)
+|+|++++++++++.+..
T Consensus 245 -~riG~~~~~~~~~~~~~~ 262 (379)
T TIGR00707 245 -VPIGATLAKEEVAEAFTP 262 (379)
T ss_pred -cccEEEEEcHHHHhhhcC
Confidence 799999999999998864
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >PRK00090 bioD dithiobiotin synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-30 Score=263.66 Aligned_cols=203 Identities=29% Similarity=0.379 Sum_probs=168.9
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCC---CCChHHHHHHhcCCCccccCCCccccccch
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYP---HDSDSRFLFTKLPSLSLRRNFPSSLILSNS 115 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~---~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (719)
.|||+||+|++|||+||++|+++|+ ++|++|+|||||++|.. .+.|..++.+.+ ++
T Consensus 1 ~i~I~~t~t~~GKT~vs~~L~~~l~-----~~g~~v~~~KPv~~g~~~~~~~~d~~~~~~~~-~~--------------- 59 (222)
T PRK00090 1 RLFVTGTDTDVGKTVVTAALAQALR-----EAGYSVAGYKPVQSGCEETDRNGDALALQRLS-GL--------------- 59 (222)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHH-----HcCCceEEEeeEecCCCCCCCcHHHHHHHHHc-CC---------------
Confidence 4899999999999999999999995 89999999999999865 345777766554 22
Q ss_pred hhhhhHHHhhhhccCCCCCCCCccCCcccccccccccccccCCCCCccccccccceeecccCcChHHHHhHhcCCCCCHH
Q 005009 116 ILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDS 195 (719)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~ 195 (719)
+. ....++++.|+.|.+|+.+++++ +..++.+
T Consensus 60 ----------------~~-------------------------------~~~~~~~~~~~~~~sp~~a~~~~-~~~~~~~ 91 (222)
T PRK00090 60 ----------------PL-------------------------------DYEDVNPYRFEEPLSPHLAAALE-GVAIDLE 91 (222)
T ss_pred ----------------CC-------------------------------ChhhcCceeeCCCCCHHHHHHHh-CCCCCHH
Confidence 01 12347899999999999999988 8888899
Q ss_pred HHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHH
Q 005009 196 KVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLK 275 (719)
Q Consensus 196 ~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~ 275 (719)
++.+.++++.++ +|++||||+||+.+|...+.+++|+++.+++|||+|++.+++++++++.+++.++
T Consensus 92 ~i~~~~~~l~~~-------------~D~viIEg~gg~~~~~~~~~~~adl~~~l~~pvilV~~~~~~~i~~~~~~i~~l~ 158 (222)
T PRK00090 92 KISAALRRLAQQ-------------YDLVLVEGAGGLLVPLTEDLTLADLAKQLQLPVILVVGVKLGCINHTLLTLEAIR 158 (222)
T ss_pred HHHHHHHHHHhh-------------CCEEEEECCCceeccCCCCCcHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHHHH
Confidence 999999876543 9999999999999998877899999999999999999999999999999999999
Q ss_pred hCCCcEEEEEEccCCCC-------CHHHHHHhhcCCCcEEe-cCCCCCCCcchhhhhh
Q 005009 276 LRGYDVVAVVFEDHGLV-------NEVPLMSYLRNRVPVLV-LPPLPQDSSNDLMEWF 325 (719)
Q Consensus 276 ~~~~~v~gvi~N~~~~~-------~~~~l~~~~~~~~pvlg-lP~~~~~~~~~~~~~l 325 (719)
.+|+++.|+|+|++... +.+.+++.+ ++|++| +|+.+......+.+++
T Consensus 159 ~~~~~i~gvIlN~~~~~~~~~~~~~~~~l~~~~--gi~vlg~ip~~~~~~~~~~~~~~ 214 (222)
T PRK00090 159 ARGLPLAGWVANGIPPEPGLRHAENLATLERLL--PAPLLGELPYLAEAELAAAAEYL 214 (222)
T ss_pred HCCCCeEEEEEccCCCcchhHHHHHHHHHHHHc--CCCeEEecCCCCCcchHHHHhhC
Confidence 99999999999998332 445556665 899999 9997654433444443
|
|
| >PRK00784 cobyric acid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.3e-27 Score=265.46 Aligned_cols=200 Identities=17% Similarity=0.080 Sum_probs=152.2
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCC-----C---CCChHHHHHHhcCCCccccCCC
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGY-----P---HDSDSRFLFTKLPSLSLRRNFP 107 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g~-----~---~~~d~~~~~~~~~~~~~~~~~~ 107 (719)
||++|||+||+|+||||+||++|+++|+ ++|++|++||||++.. + +.+|+.++.+.+.++
T Consensus 1 m~~~ifItGT~T~vGKT~vt~~L~~~l~-----~~G~~v~~~Kpv~~~~~~~~~~dg~~~~Da~~l~~~~~~~------- 68 (488)
T PRK00784 1 MAKALMVQGTASDAGKSTLVAGLCRILA-----RRGYRVAPFKAQNMSLNSAVTADGGEIGRAQALQAEAAGV------- 68 (488)
T ss_pred CCceEEEEeCCCCCcHHHHHHHHHHHHH-----HCCCeEecccchhccccceECCCCCeeHHHHHHHHHhCCC-------
Confidence 4789999999999999999999999994 8899999999985311 1 124666665544222
Q ss_pred ccccccchhhhhhHHHhhhhccCCCCCCCCccCCcccccccccccccccCCCCCccccccccceeecccCcChHHHHh--
Q 005009 108 SSLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAE-- 185 (719)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~-- 185 (719)
.+...+||+.++ |.+|+.++.
T Consensus 69 --------------------------------------------------------~~~~~i~P~~~~-~~sp~~a~~~~ 91 (488)
T PRK00784 69 --------------------------------------------------------EPSVDMNPVLLK-PQSDRGSQVIV 91 (488)
T ss_pred --------------------------------------------------------CchhccCCEEec-CCCCCcceEEE
Confidence 011346788775 678776541
Q ss_pred -------------HhcCCCCCHHHHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCC-CCCC-CCchhHHHHhhcC
Q 005009 186 -------------RESGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVA-SPGP-SGSLQCDLYRPFR 250 (719)
Q Consensus 186 -------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~-~p~~-~~~~~~dla~~l~ 250 (719)
.+ +..+..++|++.+.++.++ +|++||||+||++ .|+. .+.+++|||+.++
T Consensus 92 ~g~~~~~l~a~~~~~-~~~~~~~~I~~~~~~l~~~-------------~D~vIVEGaGg~~~~~L~~~~~~~~dlak~l~ 157 (488)
T PRK00784 92 QGKPVGNMDARDYHD-YKPRLLEAVLESLDRLAAE-------------YDVVVVEGAGSPAEINLRDRDIANMGFAEAAD 157 (488)
T ss_pred cCccccccCHHHHhh-cchhhHHHHHHHHHHHHhc-------------CCEEEEECCCCccccCcccCCchhHHHHHHcC
Confidence 22 4557788999999876644 9999999999999 5654 3578999999999
Q ss_pred CCEEEEEcCCCC-hHHHHHHHHHHHHhC-CCcEEEEEEccCCCC------CHHHHHHhhcCCCcEEe-cCCCCCCCcch
Q 005009 251 LPGILVGDGRLG-GISGTISAYESLKLR-GYDVVAVVFEDHGLV------NEVPLMSYLRNRVPVLV-LPPLPQDSSND 320 (719)
Q Consensus 251 ~pvilV~~~~~g-~i~~~~~~~~~l~~~-~~~v~gvi~N~~~~~------~~~~l~~~~~~~~pvlg-lP~~~~~~~~~ 320 (719)
+|||||++.++| ++++++.+++.+..+ +.+|+|||+|++..+ +...+++.+ ++||+| ||+.+.+.-+.
T Consensus 158 ~PVILV~~~~~g~~~~~i~~~~~~l~~~~~~~i~GvI~N~v~~~~~~~~~~~~~l~~~~--gipvLG~iP~~~~L~~~~ 234 (488)
T PRK00784 158 APVILVADIDRGGVFASLVGTLALLPPEERARVKGFIINKFRGDISLLEPGLDWLEELT--GVPVLGVLPYLDDLRLPA 234 (488)
T ss_pred CCEEEEEeCCcCcHHHHHHHHHHhcChhhCCcEEEEEEECCCCCHHHHHHHHHHHHHhc--CCCEEEEcCCCcCCCcCh
Confidence 999999999998 589998888888754 479999999999532 222244444 899999 99998876544
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.3e-26 Score=251.90 Aligned_cols=231 Identities=10% Similarity=0.008 Sum_probs=168.5
Q ss_pred EEEEeecCCceEEEeCCCCcccceeeeccccccccCCC-CCCCHHHHHHHHHhhhhccc--c-cC-CCCCChHHHHHHHH
Q 005009 377 TVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPD-ATLQIELARDMGYTAARFGH--V-MF-PENVYEPALECAEL 451 (719)
Q Consensus 377 ~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lG-H~~hP~V~~Av~~q~~~~~~--~-~~-~~~~~~~~~~Lae~ 451 (719)
..+++++| +++||.||+ +||||.| +.++| |+ ||+|++|+++|++++++ . .. ....++...+|+++
T Consensus 30 ~~~~~~~G--~~~~d~~g~----~~ld~~s---~~~lgl~~-~p~v~~A~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~ 99 (402)
T PRK07505 30 LTVGEREG--ILITLADGH----TFVNFVS---CSYLGLDT-HPAIIEGAVDALKRTGSLHLSSSRTRVRSQILKDLEEA 99 (402)
T ss_pred ceeeccCC--ccEEecCCc----eEEEeec---CCccCCCC-CHHHHHHHHHHHHHhCCCCCCccchhhhhHHHHHHHHH
Confidence 45666655 589999999 9999998 57899 99 99999999999998652 1 11 12347889999999
Q ss_pred HHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCC
Q 005009 452 LLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP 531 (719)
Q Consensus 452 L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~ 531 (719)
|++.++ . ++++++||++|++.|+|++ +..... .+|.+||+++++|||+..+.. .
T Consensus 100 la~~~~---~-~~~~~~sG~~a~~~ai~~~-~~~~~~---------------~~~~~vi~~~~~~H~s~~~~~------~ 153 (402)
T PRK07505 100 LSELFG---A-SVLTFTSCSAAHLGILPLL-ASGHLT---------------GGVPPHMVFDKNAHASLNILK------G 153 (402)
T ss_pred HHHHhC---C-CEEEECChHHHHHHHHHHH-HhcccC---------------CCCCCEEEEchhhhHhHHhhh------h
Confidence 999887 3 7888999999999999998 321100 135679999999999432111 0
Q ss_pred CCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcC
Q 005009 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611 (719)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~ 611 (719)
... . + + ....++ ++|. +.+++.+.+
T Consensus 154 ~~~--------~-~-----~------~v~~~~----------------~~d~------------------~~l~~~~~~- 178 (402)
T PRK07505 154 ICA--------D-E-----T------EVETID----------------HNDL------------------DALEDICKT- 178 (402)
T ss_pred hhh--------c-C-----C------eEEEeC----------------CCCH------------------HHHHHHHhc-
Confidence 000 0 0 0 011111 3332 445666642
Q ss_pred CCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccc--cCccccCccccccccCC-Cccee---
Q 005009 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVF--TGFWRLGVETTADLLGC-VPDIA--- 685 (719)
Q Consensus 612 ~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVq--TGfGRtG~~~a~e~~gv-~PDIv--- 685 (719)
...+++|+||+ ++.|++.. +++|+++|++||++||+||+| +||||+|++++.+++++ .||.+
T Consensus 179 ------~~~~~vl~~p~-~~~G~~~~-----~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~ 246 (402)
T PRK07505 179 ------NKTVAYVADGV-YSMGGIAP-----VKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIA 246 (402)
T ss_pred ------CCCEEEEEecc-cccCCcCC-----HHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEE
Confidence 35789999998 99876544 799999999999999999998 78999999988899998 88865
Q ss_pred -eehhccCCCccchheeE-eCHHHHhhhcC
Q 005009 686 -CYGKLLTGGVIPLAATL-ATNAVFDSFVG 713 (719)
Q Consensus 686 -tlgK~LggG~~Plsavl-~~~~i~~~~~~ 713 (719)
+++|++|+| .|.++ .++++.+.+..
T Consensus 247 ~s~sK~~~~~---Gg~~~~~~~~~~~~~~~ 273 (402)
T PRK07505 247 ASLGKAFGAS---GGVIMLGDAEQIELILR 273 (402)
T ss_pred Eechhhhhcc---CeEEEeCCHHHHHHHHH
Confidence 799999863 13344 47788877643
|
|
| >TIGR00347 bioD dethiobiotin synthase | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.5e-24 Score=208.56 Aligned_cols=165 Identities=28% Similarity=0.397 Sum_probs=140.5
Q ss_pred EEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCC-CChHHHHHHhcCCCccccCCCccccccchhhhh
Q 005009 41 QIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPH-DSDSRFLFTKLPSLSLRRNFPSSLILSNSILFS 119 (719)
Q Consensus 41 ~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (719)
||+||++|+|||+++++|+++|. ++|+||++|||++++... +.|..++.+.. +.
T Consensus 1 fI~~t~~~~GKT~va~~L~~~l~-----~~g~~V~~~kP~~~~~~~~d~d~~~i~~~~-~~------------------- 55 (166)
T TIGR00347 1 FVTGTDTGVGKTVASSALAAKLK-----KAGYSVGYYKPVQTGIEKTNSDALLLQNIS-GT------------------- 55 (166)
T ss_pred CeecCCCCccHHHHHHHHHHHHH-----HCCCcEEEEEeeeeCCCCCchHHHHHHHHc-CC-------------------
Confidence 79999999999999999999994 889999999999998653 46666665543 11
Q ss_pred hHHHhhhhccCCCCCCCCccCCcccccccccccccccCCCCCccccccccceeecccCcChHHHHhHhcCCCCCHHHHHH
Q 005009 120 SLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIE 199 (719)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~~v~~ 199 (719)
.. ....++++.+..|.+|+.+...+ +.....+++.+
T Consensus 56 ------------~~-------------------------------~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~i~~ 91 (166)
T TIGR00347 56 ------------AL-------------------------------DWDEVNPYAFALPLSPHIAADQE-GRPIDLEELSK 91 (166)
T ss_pred ------------CC-------------------------------chhccCCeeeCCCCChHHHHHHh-CCCCCHHHHHH
Confidence 00 11225678888899999887776 66678888989
Q ss_pred HHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHhCCC
Q 005009 200 TLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGY 279 (719)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~ 279 (719)
.+.++.++ +|++||||+||+.+|+....+++|+++.+++|||||++.+.++++++..+.+.++++|+
T Consensus 92 ~~~~l~~~-------------~D~viid~~g~~~~~~~~~~~~~dl~~~~~~~vilV~~~~~~~~~~~~~~~~~l~~~~~ 158 (166)
T TIGR00347 92 HLRTLEQK-------------YDFVLVEGAGGLCVPITEEYTTADLIKLLQLPVILVVRVKLGTINHTLLTVEHARQTGL 158 (166)
T ss_pred HHHHHHhc-------------CCEEEEEcCCccccCCCCCCcHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHHHHHCCC
Confidence 88876543 99999999999999988888999999999999999999999999999999999999999
Q ss_pred cEEEEEEc
Q 005009 280 DVVAVVFE 287 (719)
Q Consensus 280 ~v~gvi~N 287 (719)
++.|+|+|
T Consensus 159 ~i~gvv~N 166 (166)
T TIGR00347 159 TLAGVILN 166 (166)
T ss_pred CeEEEEeC
Confidence 99999998
|
Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor. |
| >PRK06278 cobyrinic acid a,c-diamide synthase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.7e-24 Score=238.74 Aligned_cols=190 Identities=13% Similarity=0.143 Sum_probs=142.6
Q ss_pred HHHhcccCCCCCCCC-CCCCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCCChHHHHHHh
Q 005009 18 LRLFHHSTFHPQPLD-LPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTK 96 (719)
Q Consensus 18 ~~~~~~~~~~~~~~~-~~~~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~d~~~~~~~ 96 (719)
-.+++.+-----.+. .+-+|+.|||+||+||||||+||++|+++|+ ++ |.+||| | ++..|.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~i~Iagt~Tg~GKT~vt~~L~~al~-----~~---v~~fK~---G-pD~id~------ 279 (476)
T PRK06278 218 EKLKSRSGISTNNKKEERNKPKGIILLATGSESGKTFLTTSIAGKLR-----GK---VFVAKI---G-PDVRDI------ 279 (476)
T ss_pred HHHHHHhcccccccchhhcCCCeEEEEeCCCCCCHHHHHHHHHHHHH-----hC---eEEEcC---C-CChhhc------
Confidence 345555443322222 2236889999999999999999999999994 33 999995 4 222220
Q ss_pred cCCCccccCCCccccccchhhhhhHHHhhhhccCCCCCCCCccCCcccccccccccccccCCCCCccccccccceeeccc
Q 005009 97 LPSLSLRRNFPSSLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEE 176 (719)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (719)
. ..++.|+.
T Consensus 280 ~-----------------------------------------------------------------------p~~~~~~~ 288 (476)
T PRK06278 280 V-----------------------------------------------------------------------PSLYLLRE 288 (476)
T ss_pred C-----------------------------------------------------------------------Ccceeccc
Confidence 0 12578999
Q ss_pred CcChHHHHhHhcCCC-CCHHHHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCCCC---chhHHHHhhcCCC
Q 005009 177 AVSPHLAAERESGGV-VGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSG---SLQCDLYRPFRLP 252 (719)
Q Consensus 177 ~~~p~~a~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~---~~~~dla~~l~~p 252 (719)
|+||+.++.++ +.. +..++..+.++. ..+|++|||||||+++|...+ .+++|||+.+++|
T Consensus 289 ~~sp~~a~n~~-~d~~~~~~~~~~~~~~---------------~~~DivIIEGagGL~dg~~~~~~~~S~adlAk~l~~P 352 (476)
T PRK06278 289 KMTKYNSIKIG-DRGWSDVEEFLEFVKN---------------SDYDYYIIEGVMGAFTGALNKKNPYSGAEIAKALGFP 352 (476)
T ss_pred ccCChHHHhhc-CCcccCHHHHHHHHHh---------------cCCCEEEEECCCCcccccCCCCccccHHHHHHHhCCC
Confidence 99999999976 443 555555554321 138999999999999995433 5899999999999
Q ss_pred EEEEEcCCCChHHHHHHHH----HHHHhCCCcEEEEEEccC-CCCCHHHHHHhhcC-CCcEEecCC
Q 005009 253 GILVGDGRLGGISGTISAY----ESLKLRGYDVVAVVFEDH-GLVNEVPLMSYLRN-RVPVLVLPP 312 (719)
Q Consensus 253 vilV~~~~~g~i~~~~~~~----~~l~~~~~~v~gvi~N~~-~~~~~~~l~~~~~~-~~pvlglP~ 312 (719)
||||++.++|++++++..+ +++++++++|.|||+|++ +..+.+.+++.++. ++||+|+|+
T Consensus 353 VILV~~~~~g~i~~~~~~i~G~~~~l~~~~i~i~GVIlN~v~~~~~~~~~~~~le~~gvpVLG~~~ 418 (476)
T PRK06278 353 VYIVSSCSKSGIEGAFVESMAYYSLLKKMGVKVEGIILNKVYNMEIFEKVKKIAENSNINLIGVGK 418 (476)
T ss_pred EEEEEcCCCChHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCcHHHHHHHHHHHHhcCCCEEEecc
Confidence 9999999999999998854 567778999999999999 44556666666655 999999655
|
|
| >COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.2e-24 Score=231.35 Aligned_cols=176 Identities=19% Similarity=0.240 Sum_probs=145.8
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCCChHHHHHHhcCCCccccCCCccccccchhh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSIL 117 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (719)
+.|+|+||+||+|||+||+||+++|. ++|++|.+|| -+|++.|+.|+....
T Consensus 1 ~~vvIAg~~SG~GKTTvT~glm~aL~-----~rg~~VqpfK----vGPDYIDP~~H~~at-------------------- 51 (451)
T COG1797 1 PAVVIAGTSSGSGKTTVTLGLMRALR-----RRGLKVQPFK----VGPDYIDPGYHTAAT-------------------- 51 (451)
T ss_pred CceEEecCCCCCcHHHHHHHHHHHHH-----hcCCcccccc----cCCCccCchhhhHhh--------------------
Confidence 46999999999999999999999994 8999999999 357889999876554
Q ss_pred hhhHHHhhhhccCCCCCCCCccCCcccccccccccccccCCCCCccccccccceeecccCcChHHHHhHhcCCCCCHHHH
Q 005009 118 FSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKV 197 (719)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~~v 197 (719)
+..+.|++.| .+..+.|
T Consensus 52 -----------------------------------------------G~~srNLD~~----------------mm~~~~v 68 (451)
T COG1797 52 -----------------------------------------------GRPSRNLDSW----------------MMGEEGV 68 (451)
T ss_pred -----------------------------------------------CCccCCCchh----------------hcCHHHH
Confidence 3366888888 3567888
Q ss_pred HHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCC---CCchhHHHHhhcCCCEEEEEcCCCC--hHHHHHHHHH
Q 005009 198 IETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGP---SGSLQCDLYRPFRLPGILVGDGRLG--GISGTISAYE 272 (719)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~---~~~~~~dla~~l~~pvilV~~~~~g--~i~~~~~~~~ 272 (719)
++.|.+..++ .|+.||||++|++++.. +..+.++||+.|++|||||+|++.. ++..++..+.
T Consensus 69 ~~~f~~~~~~-------------adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l~~PVvLVid~~~~s~S~AAiv~G~~ 135 (451)
T COG1797 69 RALFARAAAD-------------ADIAVIEGVMGLFDGRGSATDTGSTADLAKLLGAPVVLVVDASGLSRSVAAIVKGFK 135 (451)
T ss_pred HHHHHHhcCC-------------CCEEEEeeccccccCCCCCcCCCCHHHHHHHhCCCEEEEEeCcchhHHHHHHHHHHH
Confidence 8888887765 89999999999999833 3579999999999999999997744 3444445555
Q ss_pred HHHhCCCcEEEEEEccC-CCCCHHHHHHhhcC--CCcEEe-cCCCCCCCcc
Q 005009 273 SLKLRGYDVVAVVFEDH-GLVNEVPLMSYLRN--RVPVLV-LPPLPQDSSN 319 (719)
Q Consensus 273 ~l~~~~~~v~gvi~N~~-~~~~~~~l~~~~~~--~~pvlg-lP~~~~~~~~ 319 (719)
.+. .+++|.|||+|++ ++.|++.+++.++. ++||+| ||+.+.+.-+
T Consensus 136 ~fd-p~v~iaGVIlNrVgserH~~llr~Ale~~~gv~vlG~lpr~~~l~lp 185 (451)
T COG1797 136 HFD-PDVNIAGVILNRVGSERHYELLRDALEEYTGVPVLGYLPRDDDLELP 185 (451)
T ss_pred hcC-CCCceEEEEEecCCCHHHHHHHHHHhhhcCCCcEEEEecCCcccCCc
Confidence 554 4589999999999 68899999988875 799999 9999887754
|
|
| >PRK13896 cobyrinic acid a,c-diamide synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.9e-24 Score=234.52 Aligned_cols=174 Identities=20% Similarity=0.245 Sum_probs=133.6
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCCChHHHHHHhcCCCccccCCCccccccchh
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSI 116 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (719)
|+.|||+||+||+|||+||++|+++|+ ++|.+|.+||| | ++..|+.++...+ +.
T Consensus 1 m~~~~i~~~~s~~GKT~vt~gl~~~l~-----~~g~~v~~~K~---G-pd~iD~~~~~~~~-g~---------------- 54 (433)
T PRK13896 1 MKGFVLGGTSSGVGKTVATLATIRALE-----DAGYAVQPAKA---G-PDFIDPSHHEAVA-GR---------------- 54 (433)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHH-----HCCCeeEEEee---C-CCCCCHHHHHHHh-CC----------------
Confidence 568999999999999999999999994 88999999997 4 5567888776553 21
Q ss_pred hhhhHHHhhhhccCCCCCCCCccCCcccccccccccccccCCCCCccccccccceeecccCcChHHHHhHhcCCCCCHHH
Q 005009 117 LFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSK 196 (719)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~~ 196 (719)
.+.|+..| .+ ..+.
T Consensus 55 --------------------------------------------------~~~nld~~-------~~---------~~~~ 68 (433)
T PRK13896 55 --------------------------------------------------PSRTLDPW-------LS---------GEDG 68 (433)
T ss_pred --------------------------------------------------CcccCChh-------hC---------CHHH
Confidence 11222222 11 2344
Q ss_pred HHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCCh--HHHHHHHHHHH
Q 005009 197 VIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGG--ISGTISAYESL 274 (719)
Q Consensus 197 v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~--i~~~~~~~~~l 274 (719)
|.+.+.+ . .+|++||||+||++++ ...+++|||+.+++|||||++.++|+ ++++++++..+
T Consensus 69 i~~~~~~---~------------~~d~~vIEG~gGl~dg--~~~s~adla~~l~~PviLVv~~~~g~~s~aa~l~g~~~~ 131 (433)
T PRK13896 69 MRRNYYR---G------------EGDICVVEGVMGLYDG--DVSSTAMVAEALDLPVVLVVDAKAGMESVAATALGFRAY 131 (433)
T ss_pred HHHHHHh---h------------cCCEEEEECCCccccC--CCCCHHHHHHHHCCCEEEEEcCcccHHHHHHHHHHHHHH
Confidence 5554432 1 2899999999999986 34689999999999999999999995 66668887544
Q ss_pred Hh---CCCcEEEEEEccC-CCCCHHHHHHhhcCCCcEEe-cCCCCCCCcc
Q 005009 275 KL---RGYDVVAVVFEDH-GLVNEVPLMSYLRNRVPVLV-LPPLPQDSSN 319 (719)
Q Consensus 275 ~~---~~~~v~gvi~N~~-~~~~~~~l~~~~~~~~pvlg-lP~~~~~~~~ 319 (719)
.. ++++|.|||+|++ +..+.+.+++.+++++||+| ||..+++.-+
T Consensus 132 ~~~~~~~~~i~GvIlN~~~~~~h~~~l~~~~~~~i~vlG~lP~~~~~~~~ 181 (433)
T PRK13896 132 ADRIGRDIDVAGVIAQRAHGGRHADGIRDALPDELTYFGRIPPRDDLEIP 181 (433)
T ss_pred HHhccCCCcEEEEEEECCCcHHHHHHHHHhhhhcCceeEecccCCCCCCC
Confidence 43 5799999999999 45567777877766799999 9998876543
|
|
| >TIGR00313 cobQ cobyric acid synthase CobQ | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.1e-24 Score=241.00 Aligned_cols=194 Identities=15% Similarity=0.043 Sum_probs=139.9
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccc----cCCCC----CChHHHHHHhcCCCccccCCCcccc
Q 005009 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQ----TGYPH----DSDSRFLFTKLPSLSLRRNFPSSLI 111 (719)
Q Consensus 40 ~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~----~g~~~----~~d~~~~~~~~~~~~~~~~~~~~~~ 111 (719)
|||+||+|+||||+||++||+.|+ ++|++|+||||++ ++... .++++.++..++++ .|.
T Consensus 1 ~~I~GT~t~vGKT~v~~~L~~~l~-----~~G~~v~~fKp~~~~~~s~~~~~~~e~~~a~~~qa~a~~~-------~~~- 67 (475)
T TIGR00313 1 IMVVGTTSSAGKSTLTAGLCRILA-----RRGYRVAPFKSQNMSLNSFVTKEGGEIAIAQATQALAAGI-------EPS- 67 (475)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHH-----hCCCeEEEECCcccccCccccCCCchhHHHHHHHHHhCCC-------Cch-
Confidence 699999999999999999999994 8999999999984 22111 23344443333221 112
Q ss_pred ccchhhhhhHHHhhhhccCCCCCCCCccCCcccccccccccccccCCCCCccccccccceeecccC-------------c
Q 005009 112 LSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEA-------------V 178 (719)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~ 178 (719)
..+||+.|++| +
T Consensus 68 -------------------------------------------------------~~~nPv~lk~~~~~~s~~i~~g~~~ 92 (475)
T TIGR00313 68 -------------------------------------------------------VHMNPILLKPKGNFTSQVIVHGRAV 92 (475)
T ss_pred -------------------------------------------------------hccCCEEeCcCCCCcCcEEEcCccc
Confidence 23555666553 4
Q ss_pred ChHHHHhHhc-CCCCCHHHHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCC--CCCCCchhHHHHhhcCCCEEE
Q 005009 179 SPHLAAERES-GGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVAS--PGPSGSLQCDLYRPFRLPGIL 255 (719)
Q Consensus 179 ~p~~a~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~--p~~~~~~~~dla~~l~~pvil 255 (719)
+|+.+.+... +..+..++|.+.+.++.+. +|++||||+||+++ +...+.+++++|+.+++||||
T Consensus 93 ~~~~a~~~~~~~~~~~~~~i~~~~~~l~~~-------------~D~vIIEGaGGl~~~~~~~~d~s~~~lA~~l~apVIL 159 (475)
T TIGR00313 93 GDMNYQEYYKNKVDFFLKAIKESLEILARE-------------YDYVVIEGAGSPAEINLLKRDLANMRIAELANADAIL 159 (475)
T ss_pred CcCCHHHHhhhhhHHHHHHHHHHHHHHHhc-------------CCEEEEECCCCccccccCcCCchHHHHHHHhCCCEEE
Confidence 4554432210 3346688888888877644 99999999999987 244678999999999999999
Q ss_pred EEcCCCC-hHHHHHHHHHHHHhC-CCcEEEEEEccCCCC------CHHHHHHhhcCCCcEEe-cCCCCCC
Q 005009 256 VGDGRLG-GISGTISAYESLKLR-GYDVVAVVFEDHGLV------NEVPLMSYLRNRVPVLV-LPPLPQD 316 (719)
Q Consensus 256 V~~~~~g-~i~~~~~~~~~l~~~-~~~v~gvi~N~~~~~------~~~~l~~~~~~~~pvlg-lP~~~~~ 316 (719)
|++.++| .+++++.+++.++.. +..+.|||+|++... +.+.|++++ ++||+| +|+.+.+
T Consensus 160 V~d~~~g~~~a~i~gt~~~l~~~~~~~i~GvIlNrv~~~~~~~~~~~~~l~e~~--gipvLG~ip~~~~l 227 (475)
T TIGR00313 160 VADIDRGGVFASIYGTLKLLPENWRKLIKGIVINKFRGNVDVLKSGIEKLEELT--GIPVLGVLPYDENL 227 (475)
T ss_pred EEeCCccHHHHHHHHHHHHhChhhcCceEEEEEeccCCcHHHHHHHHHHHHHhh--CCCEEEEecCCCcC
Confidence 9998887 567888888888764 368999999999422 233344444 899999 9998765
|
|
| >PRK01077 cobyrinic acid a,c-diamide synthase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.1e-23 Score=232.00 Aligned_cols=177 Identities=18% Similarity=0.253 Sum_probs=134.7
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCCChHHHHHHhcCCCccccCCCccccccch
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNS 115 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (719)
+|+.|||+||+||||||+||++|+++|+ ++|++|.+||| | ++..|+.++...+ +.
T Consensus 2 ~m~~i~I~gt~s~~GKT~it~~L~~~L~-----~~G~~V~~fK~---G-pd~~d~~~~~~~~-g~--------------- 56 (451)
T PRK01077 2 RMPALVIAAPASGSGKTTVTLGLMRALR-----RRGLRVQPFKV---G-PDYIDPAYHTAAT-GR--------------- 56 (451)
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHH-----hCCCCcceeec---C-CCcccHHHHHHHh-CC---------------
Confidence 4789999999999999999999999994 88999999998 4 4556777665432 11
Q ss_pred hhhhhHHHhhhhccCCCCCCCCccCCcccccccccccccccCCCCCccccccccceeecccCcChHHHHhHhcCCCCCHH
Q 005009 116 ILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDS 195 (719)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~ 195 (719)
.+.++..| ....+
T Consensus 57 ---------------------------------------------------~~~~ld~~----------------~~~~~ 69 (451)
T PRK01077 57 ---------------------------------------------------PSRNLDSW----------------MMGEE 69 (451)
T ss_pred ---------------------------------------------------CcccCCce----------------eCCHH
Confidence 01111112 12466
Q ss_pred HHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCC---CCCchhHHHHhhcCCCEEEEEcCCCC--hHHHHHHH
Q 005009 196 KVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPG---PSGSLQCDLYRPFRLPGILVGDGRLG--GISGTISA 270 (719)
Q Consensus 196 ~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~---~~~~~~~dla~~l~~pvilV~~~~~g--~i~~~~~~ 270 (719)
.|.+.+.++.++ +|++||||+||++++. .++.+++|||+.+++|||||++.+.. ++++++.+
T Consensus 70 ~v~~~~~~~~~~-------------~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~~pviLV~~~~~~~~~~a~l~~~ 136 (451)
T PRK01077 70 LVRALFARAAQG-------------ADIAVIEGVMGLFDGAGSDPDEGSTADIAKLLGAPVVLVVDASGMAQSAAALVLG 136 (451)
T ss_pred HHHHHHHHhccc-------------CCEEEEECCCccccCCccCCCCCCHHHHHHHhCCCEEEEECCchHHHHHHHHHHH
Confidence 788888876544 9999999999999964 35688999999999999999998864 45566666
Q ss_pred HHHHHhCCCcEEEEEEccC-CCCCHHHHHHhhcC-CCcEEe-cCCCCCCCc
Q 005009 271 YESLKLRGYDVVAVVFEDH-GLVNEVPLMSYLRN-RVPVLV-LPPLPQDSS 318 (719)
Q Consensus 271 ~~~l~~~~~~v~gvi~N~~-~~~~~~~l~~~~~~-~~pvlg-lP~~~~~~~ 318 (719)
+..+ .+++++.|||+|++ ...+...+.+.+++ ++||+| ||+.+.+..
T Consensus 137 ~~~~-~~~i~i~GvI~N~v~~~~~~~~l~~~l~~~gipvLG~IP~~~~l~~ 186 (451)
T PRK01077 137 FATF-DPDVRIAGVILNRVGSERHYQLLREALERCGIPVLGALPRDAALAL 186 (451)
T ss_pred HHHh-CCCCCEEEEEEECCCChhHHHHHHHHHHhcCCCEEEEeeCCcccCC
Confidence 6665 34799999999999 33345555666654 899999 999987653
|
|
| >TIGR00379 cobB cobyrinic acid a,c-diamide synthase | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.9e-23 Score=230.69 Aligned_cols=174 Identities=17% Similarity=0.200 Sum_probs=129.8
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCCChHHHHHHhcCCCccccCCCccccccchhhh
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSILF 118 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (719)
+|||+||+||||||+||++|+++|+ ++|++|.+||| | ++..|+.++...+ +.
T Consensus 1 ~~~I~gT~t~vGKT~vt~~L~~~L~-----~~G~~V~~fK~---g-~d~~D~~~~~~~~-g~------------------ 52 (449)
T TIGR00379 1 RVVIAGTSSGVGKTTISTGIMKALS-----RRKLRVQPFKV---G-PDYIDPMFHTQAT-GR------------------ 52 (449)
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHH-----HCCCceeEEcc---C-CCCCCHHHHHHHh-CC------------------
Confidence 4899999999999999999999994 88999999998 3 4456777654443 11
Q ss_pred hhHHHhhhhccCCCCCCCCccCCcccccccccccccccCCCCCccccccccceeecccCcChHHHHhHhcCCCCCHHHHH
Q 005009 119 SSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVI 198 (719)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~~v~ 198 (719)
.+.++..| .++.++|.
T Consensus 53 ------------------------------------------------~~~~ld~~----------------~~~~~~i~ 68 (449)
T TIGR00379 53 ------------------------------------------------PSRNLDSF----------------FMSEAQIQ 68 (449)
T ss_pred ------------------------------------------------chhhCCcc----------------cCCHHHHH
Confidence 00111112 13577888
Q ss_pred HHHHHHHhccccccccccccCcCcEEEEeCCCCCC---CCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHH--H
Q 005009 199 ETLGKCLRDGLESESESERGKMEILCIVETAGGVA---SPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYE--S 273 (719)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~---~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~--~ 273 (719)
+.+.++.++ +|++||||+||++ +|+.+..+++|||+.+++|||||++.+ ++++++.++. .
T Consensus 69 ~~~~~~~~~-------------~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~--~~~~t~~al~~~~ 133 (449)
T TIGR00379 69 ECFHRHSKG-------------TDYSIIEGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQ--RLSRSAAAIVLGY 133 (449)
T ss_pred HHHHHhccc-------------CCEEEEecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCc--hHHHHHHHHHHHH
Confidence 888887654 8999999999999 566667899999999999999999987 4666666643 1
Q ss_pred -HHhCCCcEEEEEEccCCC-CCHHHHHHhhcC--CCcEEe-cCCCCCCCcc
Q 005009 274 -LKLRGYDVVAVVFEDHGL-VNEVPLMSYLRN--RVPVLV-LPPLPQDSSN 319 (719)
Q Consensus 274 -l~~~~~~v~gvi~N~~~~-~~~~~l~~~~~~--~~pvlg-lP~~~~~~~~ 319 (719)
...++++|.|||+|++.. .+...+.+.+++ ++||+| ||+.+++..+
T Consensus 134 ~~~~~~i~i~GvIlN~v~~~~~~~~~~~~i~~~~gipvLG~IP~~~~l~~p 184 (449)
T TIGR00379 134 RSFDPGVKLKGVILNRVGSERHLEKLKIAVEPLRGIPILGVIPRQQDLKVP 184 (449)
T ss_pred HhhCCCCCEEEEEEECCCCHHHHHHHHHHHHHhCCCCEEEEecCccccCCC
Confidence 124689999999999942 333333333332 899999 9999877643
|
This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation. |
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-22 Score=226.33 Aligned_cols=211 Identities=14% Similarity=0.050 Sum_probs=162.5
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhccccc----CCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~----~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E 475 (719)
++|+|+| |.+||.+.||+|++|+++|++++++.. .....++...+|+++|++++|. ++++|++||++||+
T Consensus 46 ~~~~~~s---n~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~---~~~~~~~SG~~An~ 119 (406)
T PRK13393 46 EVTVWCS---NDYLGMGQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHGK---EAALLFTSGYVSNW 119 (406)
T ss_pred cEEEeec---ccccCCCCCHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHhCC---CcEEEeCCcHHHHH
Confidence 8999999 899999669999999999999987642 1123456789999999999873 68999999999999
Q ss_pred HHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccc
Q 005009 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (719)
Q Consensus 476 ~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (719)
+|++...+.+ +.++|.++..|||++..++..++...
T Consensus 120 ~ai~~l~~~~--------------------~g~~I~~~~~~H~s~~~~~~~~g~~~------------------------ 155 (406)
T PRK13393 120 AALSTLGSRL--------------------PGCVILSDELNHASMIEGIRHSRAEK------------------------ 155 (406)
T ss_pred HHHHHhhcCC--------------------CCCEEEEccchhHHHHHHHHHcCCeE------------------------
Confidence 9999541211 23689999999999888776543210
Q ss_pred cCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCcc
Q 005009 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (719)
Q Consensus 556 ~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~ 635 (719)
.. + +++|. +.+++.+.. ..+.++++|++|++ ++.+|.
T Consensus 156 ----~~--~--------------~~~d~------------------~~l~~~l~~----~~~~~~~~v~~~~v-~~~~G~ 192 (406)
T PRK13393 156 ----RI--F--------------RHNDP------------------ADLERKLSD----LDPHRPKLVAFESV-YSMDGD 192 (406)
T ss_pred ----EE--e--------------CCCCH------------------HHHHHHHHh----ccCCCCEEEEEcCC-CCCCCc
Confidence 00 1 12331 234445542 11346789999998 999999
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEecccc-Cc-cccCccccccccCCC--ccee--eehhccC--CCccchheeEeCHHH
Q 005009 636 HMVDPLFQRILVKECQNRKIPVIFDEVFT-GF-WRLGVETTADLLGCV--PDIA--CYGKLLT--GGVIPLAATLATNAV 707 (719)
Q Consensus 636 ~~pp~~fl~~Lr~Lc~k~gilLI~DEVqT-Gf-GRtG~~~a~e~~gv~--PDIv--tlgK~Lg--gG~~Plsavl~~~~i 707 (719)
+.+ +++++++|++||++||+||+|+ |+ |++|..+. +++++. +||+ ||+|++| ||| +++++++
T Consensus 193 ~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~-~~~~~~~~~~i~~~tlsKa~g~~GG~-----~~~~~~~ 262 (406)
T PRK13393 193 IAP----IAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIA-EREGLADRLTIIEGTLAKAFGVMGGY-----ITGSAAL 262 (406)
T ss_pred hhC----HHHHHHHHHHcCCEEEEECCccccccCCCCCchh-hhcCCCCCCeEEEEeCchhhcccCce-----eeCCHHH
Confidence 988 9999999999999999999997 87 99998664 777775 6887 9999998 665 6788888
Q ss_pred HhhhcC
Q 005009 708 FDSFVG 713 (719)
Q Consensus 708 ~~~~~~ 713 (719)
.+.+..
T Consensus 263 ~~~l~~ 268 (406)
T PRK13393 263 CDFIRS 268 (406)
T ss_pred HHHHHH
Confidence 887654
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-22 Score=229.99 Aligned_cols=230 Identities=13% Similarity=0.143 Sum_probs=168.8
Q ss_pred eEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccC----CCCCChHHHHHHHH
Q 005009 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF----PENVYEPALECAEL 451 (719)
Q Consensus 376 p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~----~~~~~~~~~~Lae~ 451 (719)
..++.+++|. +++ .+|+ +||||.++ .++|...||+|++|+++++++++..+. ....++.+.+|+++
T Consensus 93 ~~~~~~~~G~--~i~-~~G~----~~id~~s~---~~lgl~~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~ 162 (481)
T PLN02822 93 PPVLESAAGP--HTI-INGK----DVVNFASA---NYLGLIGNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETK 162 (481)
T ss_pred CCceecCCCC--eEE-ECCc----eEEEeECC---CcCCCCCCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHH
Confidence 3467777776 677 7999 99999984 456775599999999999999876321 12457889999999
Q ss_pred HHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCC
Q 005009 452 LLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP 531 (719)
Q Consensus 452 L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~ 531 (719)
|+++++.. +.++|++ |..++.+|++.. .+|.++|.++..||+++..++.+++...
T Consensus 163 La~~~~~~--~~i~~s~-G~~a~~sai~a~----------------------~~~gd~Ii~d~~~H~s~~~~~~ls~~~~ 217 (481)
T PLN02822 163 IAKFLGTP--DSILYSY-GLSTIFSVIPAF----------------------CKKGDIIVADEGVHWGIQNGLYLSRSTI 217 (481)
T ss_pred HHHHhCCC--CEEEECC-HHHHHHHHHHHh----------------------CCCCCEEEEeCCccHHHHHHHHHcCCeE
Confidence 99999853 4666665 555788877744 2345788899999999877777764210
Q ss_pred CCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcC
Q 005009 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611 (719)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~ 611 (719)
+.+ ++||. +.++..+++.
T Consensus 218 ------------------------------~~~--------------~~nd~------------------~~l~~~l~~~ 235 (481)
T PLN02822 218 ------------------------------VYF--------------KHNDM------------------ESLRNTLEKL 235 (481)
T ss_pred ------------------------------EEE--------------CCCCH------------------HHHHHHHHHH
Confidence 001 13442 1122222221
Q ss_pred CCC-CCCCcE-EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEecccc--CccccCccccccccCC---Ccce
Q 005009 612 PGL-KVSGCI-GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT--GFWRLGVETTADLLGC---VPDI 684 (719)
Q Consensus 612 ~~~-~~~~~i-AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqT--GfGRtG~~~a~e~~gv---~PDI 684 (719)
... ....++ ++||+|++ ++..|.+.+ +++|+++|++||++||+||+++ .+||+|++ .++++|+ .|||
T Consensus 236 ~~~~~~~~~~~~~Ivve~i-~~~~G~i~~----L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G-~~e~~~v~~~~~di 309 (481)
T PLN02822 236 TAENKRKKKLRRYIVVEAI-YQNSGQIAP----LDEIVRLKEKYRFRVLLDESNSFGVLGKSGRG-LSEHFGVPIEKIDI 309 (481)
T ss_pred hhhhcccCCCcEEEEEecC-CCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCCC-hHHHcCCCCCCCeE
Confidence 000 001234 89999998 999999988 9999999999999999999998 57889987 5789998 7999
Q ss_pred ee--ehhccC--CCccchheeEeCHHHHhhhcC
Q 005009 685 AC--YGKLLT--GGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 685 vt--lgK~Lg--gG~~Plsavl~~~~i~~~~~~ 713 (719)
++ |||++| ||| +++++++++.+..
T Consensus 310 i~~s~sKalg~~GG~-----i~g~~~ii~~~~~ 337 (481)
T PLN02822 310 ITAAMGHALATEGGF-----CTGSARVVDHQRL 337 (481)
T ss_pred EEecchhhhhhCCeE-----EEcCHHHHHHHHh
Confidence 88 889998 775 8899999998753
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-21 Score=215.94 Aligned_cols=210 Identities=15% Similarity=0.064 Sum_probs=159.7
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccC---C-CCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF---P-ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~---~-~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E 475 (719)
+++||+| |++||++.||+|++|+.++++++++... . ...++...+|+++|+++.+ .+++++++||++||+
T Consensus 47 ~~~~~~s---~dylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~g---~~~~~~~~sG~~an~ 120 (407)
T PRK09064 47 EVTVWCS---NDYLGMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLHG---KEAALVFTSGYVSND 120 (407)
T ss_pred eEEEEEC---CCCcCCCCCHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHhC---CCcEEEECcHHHHHH
Confidence 8999999 8999999999999999999999865421 1 1247789999999999887 367899999999999
Q ss_pred HHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccc
Q 005009 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (719)
Q Consensus 476 ~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (719)
.|++++. .+ . +..+|..+..+|++...++.+++...
T Consensus 121 ~ai~~l~-~~--~-----------------~~~~i~~~~~~h~s~~~~~~~~~~~~------------------------ 156 (407)
T PRK09064 121 ATLSTLA-KL--I-----------------PDCVIFSDELNHASMIEGIRRSRCEK------------------------ 156 (407)
T ss_pred HHHHHHh-CC--C-----------------CCCEEEEeCcchHHHHHHHHHcCCcE------------------------
Confidence 9999883 21 1 13567777777887665554432110
Q ss_pred cCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCcc
Q 005009 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (719)
Q Consensus 556 ~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~ 635 (719)
..+ +++| .+.+++.++. ..++++.+|++|++ ++..|.
T Consensus 157 ------~~~--------------~~~d------------------~~~le~~l~~----~~~~~~~~v~~~~v-~s~~G~ 193 (407)
T PRK09064 157 ------HIF--------------RHND------------------VAHLEELLAA----ADPDRPKLIAFESV-YSMDGD 193 (407)
T ss_pred ------EEE--------------CCCC------------------HHHHHHHHHh----ccCCCCeEEEEeCC-CCCCcc
Confidence 000 1222 1345666653 12246789999998 999999
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEecccc-C-ccccCccccccccCC--Cccee--eehhccC--CCccchheeEeCHHH
Q 005009 636 HMVDPLFQRILVKECQNRKIPVIFDEVFT-G-FWRLGVETTADLLGC--VPDIA--CYGKLLT--GGVIPLAATLATNAV 707 (719)
Q Consensus 636 ~~pp~~fl~~Lr~Lc~k~gilLI~DEVqT-G-fGRtG~~~a~e~~gv--~PDIv--tlgK~Lg--gG~~Plsavl~~~~i 707 (719)
+.+ +++|+++|++||++||+||+|+ | ||++|.++ .+++++ .|||+ ||||++| ||| +++++++
T Consensus 194 ~~~----l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~-~~~~~~~~~~div~~t~sKa~g~~GG~-----~~~~~~~ 263 (407)
T PRK09064 194 IAP----IAEICDLADKYNALTYLDEVHAVGMYGPRGGGI-AERDGLMDRIDIIEGTLAKAFGVMGGY-----IAGSAAL 263 (407)
T ss_pred ccC----HHHHHHHHHHcCCEEEEECCCcccccCCCCCCh-HHhcCCCCCCeEEEEecchhhhccCce-----EecCHHH
Confidence 887 9999999999999999999997 7 69999876 567776 58998 9999998 665 7889998
Q ss_pred Hhhhc
Q 005009 708 FDSFV 712 (719)
Q Consensus 708 ~~~~~ 712 (719)
++.+.
T Consensus 264 ~~~l~ 268 (407)
T PRK09064 264 VDAVR 268 (407)
T ss_pred HHHHH
Confidence 88764
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.1e-21 Score=212.44 Aligned_cols=211 Identities=18% Similarity=0.131 Sum_probs=160.7
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccC----CCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF----PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~----~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E 475 (719)
++++|.| |++||.+.||+|++|+++|++++++... ....++...+|+++|+++.+. +.+++++||++||+
T Consensus 46 ~~~~~~s---n~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g~---~~~l~~~sG~~an~ 119 (402)
T TIGR01821 46 DVTVWCS---NDYLGMGQHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHGK---ESALVFTSGYVAND 119 (402)
T ss_pred eEEEeEc---cCcCCCCCCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhCC---CeEEEECchHHHHH
Confidence 8999999 9999999999999999999999876431 123577899999999999873 57899999999999
Q ss_pred HHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccc
Q 005009 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (719)
Q Consensus 476 ~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (719)
.|++++. .+ .+..+|..+..||+++..++..++...
T Consensus 120 ~ai~~l~-~~-------------------~~~~~v~~~~~~h~s~~~~~~~~g~~~------------------------ 155 (402)
T TIGR01821 120 ATLATLA-KI-------------------IPGCVIFSDELNHASMIEGIRHSGAEK------------------------ 155 (402)
T ss_pred HHHHHhh-CC-------------------CCCCEEEEcchHhHHHHHHHHHcCCeE------------------------
Confidence 9999982 21 113578888889998877665543210
Q ss_pred cCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCcc
Q 005009 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (719)
Q Consensus 556 ~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~ 635 (719)
.. + +++|. +.+++.++. ..++++.+|++|++ ++..|.
T Consensus 156 ----~~--~--------------~~~d~------------------~~l~~~l~~----~~~~~~~~v~~e~~-~~~~G~ 192 (402)
T TIGR01821 156 ----FI--F--------------RHNDV------------------AHLEKLLQS----VDPNRPKIIAFESV-YSMDGD 192 (402)
T ss_pred ----EE--E--------------CCCCH------------------HHHHHHHHh----ccCCCCeEEEEcCC-CCCCCC
Confidence 00 0 02221 345555543 12235789999998 999999
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEecccc-C-ccccCccccccccCC--Cccee--eehhccC--CCccchheeEeCHHH
Q 005009 636 HMVDPLFQRILVKECQNRKIPVIFDEVFT-G-FWRLGVETTADLLGC--VPDIA--CYGKLLT--GGVIPLAATLATNAV 707 (719)
Q Consensus 636 ~~pp~~fl~~Lr~Lc~k~gilLI~DEVqT-G-fGRtG~~~a~e~~gv--~PDIv--tlgK~Lg--gG~~Plsavl~~~~i 707 (719)
+.+ +++|+++|++||++||+||+|+ | +|++|.+. .+++++ .|||+ |++|++| ||| +++++++
T Consensus 193 ~~~----l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~-~~~~~~~~~~div~~t~sKa~g~~GG~-----i~~~~~~ 262 (402)
T TIGR01821 193 IAP----IEEICDLADKYGALTYLDEVHAVGLYGPRGGGI-AERDGLMHRIDIIEGTLAKAFGVVGGY-----IAASRKL 262 (402)
T ss_pred ccC----HHHHHHHHHHcCCEEEEeCcccccccCCCCCcc-chhccCCCCCeEEEEechhhhccCCce-----eecCHHH
Confidence 987 9999999999999999999998 5 46776643 467776 57888 9999998 565 7889999
Q ss_pred HhhhcC
Q 005009 708 FDSFVG 713 (719)
Q Consensus 708 ~~~~~~ 713 (719)
++.+..
T Consensus 263 ~~~l~~ 268 (402)
T TIGR01821 263 IDAIRS 268 (402)
T ss_pred HHHHHH
Confidence 887753
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PRK05632 phosphate acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.2e-21 Score=223.90 Aligned_cols=185 Identities=16% Similarity=0.106 Sum_probs=138.6
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCCChHHHHHHhcCCCccccCCCccccccch
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNS 115 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (719)
||++|||+||+|++|||+||+||+++|+ ++|++|+|||||++++- +........
T Consensus 1 m~k~l~I~~T~t~~GKT~vslgL~~~L~-----~~G~~Vg~fKPi~~~p~---~~~~~~~~~------------------ 54 (684)
T PRK05632 1 MSRSIYLAPTGTGVGLTSVSLGLMRALE-----RKGVKVGFFKPIAQPPL---TMSEVEALL------------------ 54 (684)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHH-----hCCCeEEEeCCcccCCC---CHHHHHHHH------------------
Confidence 4679999999999999999999999994 88999999999998721 111111100
Q ss_pred hhhhhHHHhhhhccCCCCCCCCccCCcccccccccccccccCCCCCccccccccceeecccCcChHHHHhHhcCCCCCHH
Q 005009 116 ILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDS 195 (719)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~ 195 (719)
. +.+.....+
T Consensus 55 -------------------------------------------------------------------~---~~~~~~~~~ 64 (684)
T PRK05632 55 -------------------------------------------------------------------A---SGQLDELLE 64 (684)
T ss_pred -------------------------------------------------------------------h---ccCChHHHH
Confidence 0 001123467
Q ss_pred HHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCCh----HHHHHHHH
Q 005009 196 KVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGG----ISGTISAY 271 (719)
Q Consensus 196 ~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~----i~~~~~~~ 271 (719)
+|.+.|.++.++ +|++||||++|+........+|+|||+.|++|||||++.+.++ ++++..+.
T Consensus 65 ~I~~~~~~l~~~-------------~D~VLIEGa~~~~~~~~~~~~na~iA~~L~~pVILV~~~~~~si~d~~~~i~~~~ 131 (684)
T PRK05632 65 EIVARYHALAKD-------------CDVVLVEGLDPTRKHPFEFSLNAEIAKNLGAEVVLVSSGGNDTPEELAERIELAA 131 (684)
T ss_pred HHHHHHHHhccC-------------CCEEEEeCcCCCCcCcccCchHHHHHHHhCCCEEEEECCCCCChHHHHHHHHHHH
Confidence 788888776543 9999999998777655556789999999999999999999887 57778888
Q ss_pred HHHH-hCCCcEEEEEEcc--CCCCCHHHHHHhh------------------cC-CCcEEe-cCCCCCCCcchhhhhhhhc
Q 005009 272 ESLK-LRGYDVVAVVFED--HGLVNEVPLMSYL------------------RN-RVPVLV-LPPLPQDSSNDLMEWFDES 328 (719)
Q Consensus 272 ~~l~-~~~~~v~gvi~N~--~~~~~~~~l~~~~------------------~~-~~pvlg-lP~~~~~~~~~~~~~l~~~ 328 (719)
+.+. .++.+++|||+|+ +.......+.+.+ .. ++|++| ||+.+.+.++++.+..+.+
T Consensus 132 ~~l~~~~~~~v~GVIvNr~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~LG~IP~d~~L~~~t~~~i~~~L 211 (684)
T PRK05632 132 SSFGGAKNANILGVIINKLNAPVDEQGRTRPDLSEIFDDSSKANVDPSKLFASSPLPLLGVVPWSPDLIAPRVIDIAKHL 211 (684)
T ss_pred HHhccCCCCcEEEEEEECCCCCHHHHHHHHHHHHhhhccccccchhcchhhhcCCCceEEEccCccccCCCCHHHHHHHc
Confidence 8887 7889999999999 4333333333322 22 899999 9999999988666555544
Q ss_pred h
Q 005009 329 H 329 (719)
Q Consensus 329 ~ 329 (719)
.
T Consensus 212 ~ 212 (684)
T PRK05632 212 G 212 (684)
T ss_pred C
Confidence 3
|
|
| >cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-20 Score=178.12 Aligned_cols=88 Identities=26% Similarity=0.355 Sum_probs=78.9
Q ss_pred cEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCC------CHH
Q 005009 222 ILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV------NEV 295 (719)
Q Consensus 222 d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~~------~~~ 295 (719)
|++|||||||+++|...+.+++|+++.+++|+|+|++.++|+++|++.+++.++.+|+.+.|||.|+.... +.+
T Consensus 40 d~vliEGaGg~~~p~~~~~~~~d~~~~~~~~vllV~~~~~g~i~~a~~~~~~l~~~g~~i~gvi~N~~~~~~~~~~~~~~ 119 (134)
T cd03109 40 DFVLVEGAGGLCVPLKEDFTNADVAKELNLPAILVTSAGLGSINHAFLTIEAARIKGIILNGVLGNVIVEKEGLATLNVE 119 (134)
T ss_pred CEEEEECCCccccCCCCCCCHHHHHHHhCCCEEEEEcCCCCcHhHHHHHHHHHHhcCCceeEEEEccCCCccchhhhhHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999998321 245
Q ss_pred HHHHhhcCCCcEEe-cC
Q 005009 296 PLMSYLRNRVPVLV-LP 311 (719)
Q Consensus 296 ~l~~~~~~~~pvlg-lP 311 (719)
.+.+.+ ++|++| +|
T Consensus 120 ~i~~~~--gip~LG~IP 134 (134)
T cd03109 120 TIERLT--GIPVLGIVP 134 (134)
T ss_pred HHHHhc--CCCEEEeCC
Confidence 555555 999999 76
|
The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors. |
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-20 Score=210.30 Aligned_cols=227 Identities=9% Similarity=0.020 Sum_probs=174.2
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccC----CCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF----PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~----~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E 475 (719)
++|||.| |++||.++||+|++++.+.+++++.... ....+..+.+|+++|+++++ .+.+++++||+.||.
T Consensus 103 ~~l~FsS---ndYLGL~~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~g---~e~all~sSGy~AN~ 176 (476)
T PLN02955 103 KLLLFSG---NDYLGLSSHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLKK---KEDCLVCPTGFAANM 176 (476)
T ss_pred eEEEeec---cCccCCCCCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHHC---CCcEEEECChHHHHH
Confidence 8999999 9999999999999999999999986531 22347888999999999998 478999999999999
Q ss_pred HHHHHHHHHhhc---cccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCc
Q 005009 476 IALKMAFRKFSF---DHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (719)
Q Consensus 476 ~AlKlA~r~~~~---~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (719)
+++.... .... ..+ -+..++..+|..+...|.+...++.++... ..
T Consensus 177 ~~i~aL~-~~~~~~~~~~----------~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~---~~----------------- 225 (476)
T PLN02955 177 AAMVAIG-SVASLLAASG----------KPLKNEKVAIFSDALNHASIIDGVRLAERQ---GN----------------- 225 (476)
T ss_pred HHHHHHh-hccccccccc----------cccCCCCcEEEEeccchHHHHHHHHhcccc---CC-----------------
Confidence 9998751 1000 000 001235678999999999988888776321 00
Q ss_pred ccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 005009 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (719)
Q Consensus 553 ~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~ 632 (719)
..... ++|||. +.|++.|+.. .++.+.||+|+| .++
T Consensus 226 ------a~~~~--------------f~HND~------------------~~Le~~L~~~-----~~~~~~Vv~EgV-~Sm 261 (476)
T PLN02955 226 ------VEVFV--------------YRHCDM------------------YHLNSLLSSC-----KMKRKVVVTDSL-FSM 261 (476)
T ss_pred ------ceEEE--------------eCCCCH------------------HHHHHHHHhC-----CCCceEEEEeCC-CCC
Confidence 00011 126764 5677777642 345578999998 999
Q ss_pred CccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc--cccccccCCCcce----eeehhccC--CCccchheeEeC
Q 005009 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETTADLLGCVPDI----ACYGKLLT--GGVIPLAATLAT 704 (719)
Q Consensus 633 gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~--~~a~e~~gv~PDI----vtlgK~Lg--gG~~Plsavl~~ 704 (719)
.|.+.| +++|+++|++||++||+||+|+ +|+.|+ .+..+++|+.||+ .||||++| ||| ++++
T Consensus 262 dGdiap----L~eL~~L~~~~ga~LiVDEAH~-~Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA~G~~GGf-----i~gs 331 (476)
T PLN02955 262 DGDFAP----MEELSQLRKKYGFLLVIDDAHG-TFVCGENGGGVAEEFNCEADVDLCVGTLSKAAGCHGGF-----IACS 331 (476)
T ss_pred CCCcCC----HHHHHHHHHHcCcEEEEccccc-CceecCCCCcHHHHhCCCCCCcEEEEeCccchhccCce-----eecH
Confidence 999998 9999999999999999999995 667777 5667799998877 59999999 786 9999
Q ss_pred HHHHhhhcCCCCC
Q 005009 705 NAVFDSFVGDSKK 717 (719)
Q Consensus 705 ~~i~~~~~~~~~~ 717 (719)
+++++.+....++
T Consensus 332 ~~~~~~l~~~~~~ 344 (476)
T PLN02955 332 KKWKQLIQSRGRS 344 (476)
T ss_pred HHHHHHHHHhCCC
Confidence 9999988765544
|
|
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.2e-20 Score=203.56 Aligned_cols=220 Identities=16% Similarity=0.111 Sum_probs=176.6
Q ss_pred CCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccC----CCCCChHHHHHHHHHHhccCCCCCCeEEEe
Q 005009 392 DQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF----PENVYEPALECAELLLQGVGKGWASRAYFS 467 (719)
Q Consensus 392 ~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~----~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~ 467 (719)
.+|+ +++||+| |++||.+.||+|++|+++++++++.... ....++.+.+|+++|+++.| .++++++
T Consensus 36 ~~~~----~~~nf~S---NdYLGLa~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~g---~e~al~f 105 (388)
T COG0156 36 ADGR----KVLNFCS---NDYLGLASHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFLG---AEAALLF 105 (388)
T ss_pred cCCc----eeEeeec---cCcccccCCHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHhC---CCcEEEE
Confidence 3477 9999999 9999999999999999999999765431 23458899999999999998 4789999
Q ss_pred CChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcc
Q 005009 468 DNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLF 547 (719)
Q Consensus 468 ~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~ 547 (719)
+||..||.+++-.. .++.++|..+.-.|.+...+..+++...++
T Consensus 106 ~SGy~AN~~~i~~l----------------------~~~~dli~~D~lnHASiidG~rls~a~~~~-------------- 149 (388)
T COG0156 106 SSGFVANLGLLSAL----------------------LKKGDLIFSDELNHASIIDGIRLSRAEVRR-------------- 149 (388)
T ss_pred cccchhHHHHHHHh----------------------cCCCcEEEEechhhhhHHHHHHhCCCcEEE--------------
Confidence 99999999999887 345689999999999998888887543211
Q ss_pred cCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcc
Q 005009 548 LDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEP 627 (719)
Q Consensus 548 ~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEP 627 (719)
..+||. +.||+.|++.. ..++ +-..|++|.
T Consensus 150 ------------------------------f~HnD~------------------~~Le~~l~~~~-~~~~-~~~~Ivteg 179 (388)
T COG0156 150 ------------------------------FKHNDL------------------DHLEALLEEAR-ENGA-RRKLIVTEG 179 (388)
T ss_pred ------------------------------ecCCCH------------------HHHHHHHHhhh-ccCC-CceEEEEec
Confidence 114552 66788887531 0122 567999999
Q ss_pred ccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc--cccccccCCCcc---ee--eehhccCC--Cccch
Q 005009 628 VVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETTADLLGCVPD---IA--CYGKLLTG--GVIPL 698 (719)
Q Consensus 628 Viqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~--~~a~e~~gv~PD---Iv--tlgK~Lgg--G~~Pl 698 (719)
| +++.|.+.| |++|.+||+|||++|++||+|. +|-.|+ .+.++++|+.|+ |+ ||||++|+ ||
T Consensus 180 V-fSMdGdiAp----L~~l~~L~~ky~a~L~VDEAHa-~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlGs~Gg~--- 250 (388)
T COG0156 180 V-FSMDGDIAP----LPELVELAEKYGALLYVDEAHA-VGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGSSGGY--- 250 (388)
T ss_pred c-ccCCCCcCC----HHHHHHHHHHhCcEEEEEcccc-ccccCCCCccHHHHhCCCCccceEEEEEchhhhcccCce---
Confidence 8 999999999 9999999999999999999994 555554 355677898765 43 89999984 55
Q ss_pred heeEeCHHHHhhhcCCCCCC
Q 005009 699 AATLATNAVFDSFVGDSKKR 718 (719)
Q Consensus 699 savl~~~~i~~~~~~~~~~~ 718 (719)
+++++.+.+.+....++|
T Consensus 251 --v~g~~~~~d~L~~~ar~~ 268 (388)
T COG0156 251 --IAGSAALIDYLRNRARPF 268 (388)
T ss_pred --eeCcHHHHHHHHHhCCce
Confidence 999999999998766654
|
|
| >COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-21 Score=215.67 Aligned_cols=211 Identities=19% Similarity=0.148 Sum_probs=154.4
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccc--------cCCCCCChHHHHHHhcCCCccccCCCc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQ--------TGYPHDSDSRFLFTKLPSLSLRRNFPS 108 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~--------~g~~~~~d~~~~~~~~~~~~~~~~~~~ 108 (719)
|+.+||.||.+++|||++++||||.|. ++|++|++|||.. .++.+..-+++++..++++ .
T Consensus 1 ~~~iMv~GT~S~~GKS~~~aglcRi~~-----~~G~~V~PFK~QNMsLNs~it~~G~EIgraQ~~QA~Aa~i-------~ 68 (486)
T COG1492 1 MKAIMVQGTTSDAGKSFLVAGLCRILA-----RRGYRVAPFKSQNMSLNSAITPGGGEIGRAQALQALAAGI-------E 68 (486)
T ss_pred CCccEEEeccCCcchhhhhhhhhHHHH-----hcCCccCCCchhhcccccEECCCCcEEehhhhHHHHHcCC-------C
Confidence 357999999999999999999999994 9999999999943 3344557789999999888 7
Q ss_pred cccccchhhhhhHHHhhhhccCCCCCCCCccCCcccccccccccccccCCCCCccccccccceeecccCcChHHHHh-Hh
Q 005009 109 SLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAE-RE 187 (719)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~-~~ 187 (719)
|++.||++|+++.... .+|+...+.+.. -..+.+ ..
T Consensus 69 p~v~mNPvLLKP~sd~----------------------------~sQVIv~G~~~G---------------~~s~~~yy~ 105 (486)
T COG1492 69 PSVHMNPVLLKPCSDT----------------------------GSQVIVMGKDIG---------------RKSAVEYYQ 105 (486)
T ss_pred CccccCCEEEeecCCC----------------------------ceEEEEeccccc---------------ccChHHHHH
Confidence 9999999998876321 222222222221 111111 11
Q ss_pred cCCCCCHHHHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCC--CCCCchhHHHHhhcCCCEEEEEcCCCCh-H
Q 005009 188 SGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASP--GPSGSLQCDLYRPFRLPGILVGDGRLGG-I 264 (719)
Q Consensus 188 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p--~~~~~~~~dla~~l~~pvilV~~~~~g~-i 264 (719)
.+.......+.+++.++.+. +|+|++||||+-... -..+..|+.+|+..++|||||+|+..|+ +
T Consensus 106 ~~~~~l~~~v~~s~~~l~~~-------------~d~Vv~EGAGSpaEiNlr~~Di~Nm~~a~~~dapvILV~DIdRGGvf 172 (486)
T COG1492 106 EGKGLLWVAVKESLERLDRE-------------YDVVVIEGAGSPAEINLRDRDIANMGVAEIADAPVILVGDIDRGGVF 172 (486)
T ss_pred HHHHHHHHHHHHHHHHhhhc-------------ccEEEEecCCChhhcCcccccccceeeehhcCCCEEEEEeeccccee
Confidence 02234567777887777655 999999999943332 2356899999999999999999977765 4
Q ss_pred HHHHHHHHHHHhC-CCcEEEEEEccC-C-----CCCHHHHHHhhcCCCcEEe-cCCCCCCC
Q 005009 265 SGTISAYESLKLR-GYDVVAVVFEDH-G-----LVNEVPLMSYLRNRVPVLV-LPPLPQDS 317 (719)
Q Consensus 265 ~~~~~~~~~l~~~-~~~v~gvi~N~~-~-----~~~~~~l~~~~~~~~pvlg-lP~~~~~~ 317 (719)
.+...+++.|... .-.|.|+|+|++ + .+..++|++.+ ++|||| +||++..-
T Consensus 173 Asl~GT~~lL~~~~r~~VkG~iINkFRGd~~ll~~gik~Le~~t--g~~vlGv~P~~~~~~ 231 (486)
T COG1492 173 ASLYGTLALLPESDRALVKGFIINKFRGDESLLDPGLKWLEELT--GVPVLGVLPYLKDAL 231 (486)
T ss_pred eeeeehheecCHhHhcceeEEEEeeeCCCHHHHhhHHHHHHHhh--CCeeEeecccccccc
Confidence 5555578877643 247999999998 2 34577777777 999999 99987643
|
|
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.6e-18 Score=190.10 Aligned_cols=218 Identities=11% Similarity=0.036 Sum_probs=151.4
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhccccc--CCCC--CChHHHHHHH
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM--FPEN--VYEPALECAE 450 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~--~~~~--~~~~~~~Lae 450 (719)
.++++.+++| .+++|.+|| .|||+. + ||+|++|+.+|+++++... ...+ ..+...+|++
T Consensus 44 ~~~~~~~~~g--~~~~~~~~~----~YL~l~----------~-~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~ 106 (407)
T PRK07179 44 KHLVLGKTPG--PDAIILQSN----DYLNLS----------G-HPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEK 106 (407)
T ss_pred ceEEeecCCC--CcEEEeecC----CccCCC----------C-CHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHH
Confidence 3556655555 478999999 999987 4 9999999999998874221 1112 2357889999
Q ss_pred HHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCC
Q 005009 451 LLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS 530 (719)
Q Consensus 451 ~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~ 530 (719)
+|+++++. +.++|++||++||+.|++... . + .+.|..+.-.|-+...++...+.
T Consensus 107 ~la~~~g~---~~~~~~~sG~~An~~~l~~l~-----~---------------~--g~~v~~~~~~h~s~~~~~~~~g~- 160 (407)
T PRK07179 107 KLAAFTGF---ESCLLCQSGWAANVGLLQTIA-----D---------------P--NTPVYIDFFAHMSLWEGVRAAGA- 160 (407)
T ss_pred HHHHHhCC---CcEEEECCHHHHHHHHHHHhC-----C---------------C--CCEEEEECCcCHHHHHHHHHCCC-
Confidence 99999873 678999999999999999771 1 1 12233344445433322221110
Q ss_pred CCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhc
Q 005009 531 PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQ 610 (719)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~ 610 (719)
...+++ ++| .+.+++.+.+
T Consensus 161 -----------------------------~~~~~~--------------~~d------------------~~~l~~~l~~ 179 (407)
T PRK07179 161 -----------------------------QAHPFR--------------HND------------------VDHLRRQIER 179 (407)
T ss_pred -----------------------------eEEEec--------------CCC------------------HHHHHHHHHh
Confidence 001111 222 2456666652
Q ss_pred CCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccC--ccccCccccccccCCC--cceee
Q 005009 611 NPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG--FWRLGVETTADLLGCV--PDIAC 686 (719)
Q Consensus 611 ~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTG--fGRtG~~~a~e~~gv~--PDIvt 686 (719)
.+.++|++|++ ++..|.+.| +++|.++|++||++||+||+|+. +|++|..+ ++++++. +|+++
T Consensus 180 -------~~~~lV~v~~v-~n~tG~i~p----l~~I~~l~~~~~~~livDea~~~g~~g~~g~g~-~~~~~~~~~vdi~~ 246 (407)
T PRK07179 180 -------HGPGIIVVDSV-YSTTGTIAP----LADIVDIAEEFGCVLVVDESHSLGTHGPQGAGL-VAELGLTSRVHFIT 246 (407)
T ss_pred -------cCCeEEEECCC-CCCCCcccc----HHHHHHHHHHcCCEEEEECcccccCcCCCCCch-HHhcCCCCCCCEEE
Confidence 13578999998 999999988 89999999999999999999973 45666644 4567774 48864
Q ss_pred --ehhccCCCccchheeEeCHHHHhhhc
Q 005009 687 --YGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 687 --lgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
++|++|+ ++|++++++++++.+.
T Consensus 247 ~S~sK~~g~---~~G~l~~~~~~~~~~~ 271 (407)
T PRK07179 247 ASLAKAFAG---RAGIITCPRELAEYVP 271 (407)
T ss_pred eechHhhhc---cCeEEEeCHHHHHHHH
Confidence 7999975 4789999999877664
|
|
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-17 Score=185.72 Aligned_cols=216 Identities=13% Similarity=0.114 Sum_probs=145.7
Q ss_pred eeccccccccCCCCCCCHHHHHHHHHhhhhcccccCC----CCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHH
Q 005009 402 FDACASWWTQGPDATLQIELARDMGYTAARFGHVMFP----ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIA 477 (719)
Q Consensus 402 LD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~----~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~A 477 (719)
|||.| +++||.+.||++++++.+++++++..+.. ...+....+|+++|+++.+. +..++++||+.|+-++
T Consensus 1 ~~f~s---~dyLgl~~~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~g~---e~al~~~sG~~a~~~~ 74 (392)
T PLN03227 1 LNFAT---HDFLSTSSSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLGT---ESAILYSDGASTTSST 74 (392)
T ss_pred CCCcC---cCccCCCCCHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHhCC---CcEEEecCcHHHHHHH
Confidence 46666 88999999999999999999987643311 11256788999999999874 5789999999999977
Q ss_pred HHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccC
Q 005009 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (719)
Q Consensus 478 lKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (719)
+... .+ +.+.|..+..-|+++..++.+++..
T Consensus 75 i~~l-----~~-----------------~GD~Vl~~~~~h~s~~~~~~l~~~~--------------------------- 105 (392)
T PLN03227 75 VAAF-----AK-----------------RGDLLVVDRGVNEALLVGVSLSRAN--------------------------- 105 (392)
T ss_pred HHHh-----CC-----------------CCCEEEEeccccHHHHHHHHHcCCe---------------------------
Confidence 7654 11 2244556666677665554433210
Q ss_pred cceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC---CCCCCcEEEEEEccccccCCc
Q 005009 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG---LKVSGCIGALIIEPVVHAAGG 634 (719)
Q Consensus 558 ~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~---~~~~~~iAAvIvEPViqg~gG 634 (719)
... ++++|.+ + .+.+.+.+..... .....+...|++||+ ++.+|
T Consensus 106 ---~~~--------------~~~~d~~----------~-----l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v-~~~~G 152 (392)
T PLN03227 106 ---VRW--------------FRHNDMK----------D-----LRRVLEQVRAQDVALKRKPTDQRRFLVVEGL-YKNTG 152 (392)
T ss_pred ---EEE--------------eCCCCHH----------H-----HHHHHHHhhhhccccccccCCCcEEEEEcCC-cCCCC
Confidence 000 0123321 0 0111112211000 001235678999998 99999
Q ss_pred cccCCHHHHHHHHHHHHhcCCcEEEecccc--CccccCccccccccCCCc----ceeeehhccCCCccch-heeEeCHHH
Q 005009 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFT--GFWRLGVETTADLLGCVP----DIACYGKLLTGGVIPL-AATLATNAV 707 (719)
Q Consensus 635 ~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqT--GfGRtG~~~a~e~~gv~P----DIvtlgK~LggG~~Pl-savl~~~~i 707 (719)
.+.+ +++++++|++||++||+||+++ ++|++|. |+++++|+.| ||++++++ .|+.|+ |++++++++
T Consensus 153 ~i~~----l~~i~~l~~~~g~~livDe~~~~g~~g~~G~-g~~~~~g~~p~~~~Div~~sls--k~~g~~gg~v~~~~~~ 225 (392)
T PLN03227 153 TLAP----LKELVALKEEFHYRLILDESFSFGTLGKSGR-GSLEHAGLKPMVHAEIVTFSLE--NAFGSVGGMTVGSEEV 225 (392)
T ss_pred cccC----HHHHHHHHHHcCCEEEEECcccccccCCCCC-cHHHHcCCCCCCCceEEEeech--hhhhccCcEEecCHHH
Confidence 9988 9999999999999999999997 4566666 6889999999 99987733 332255 456789998
Q ss_pred Hhhhc
Q 005009 708 FDSFV 712 (719)
Q Consensus 708 ~~~~~ 712 (719)
++.+.
T Consensus 226 ~~~~~ 230 (392)
T PLN03227 226 VDHQR 230 (392)
T ss_pred HHHHH
Confidence 87664
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.1e-17 Score=178.08 Aligned_cols=227 Identities=11% Similarity=0.046 Sum_probs=159.0
Q ss_pred eEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhccccc----CCCCCChHHHHHHHH
Q 005009 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAEL 451 (719)
Q Consensus 376 p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~----~~~~~~~~~~~Lae~ 451 (719)
|.++.+++|. |++ .+|+ +||||.+ +..+||..||++++++.+++.++.+.. ......+...+++++
T Consensus 17 ~~~~~~~~g~--~~~-~~g~----~~id~~~---~~~~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~ 86 (385)
T TIGR01825 17 IRVLESAQGP--RVR-VNGK----EVINLSS---NNYLGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEK 86 (385)
T ss_pred ccccccCCCc--eEE-ECCc----eEEEeec---cCccCCCCCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHH
Confidence 5577777776 788 9999 9999987 356899339999999999998764321 122346778899999
Q ss_pred HHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCC
Q 005009 452 LLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP 531 (719)
Q Consensus 452 L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~ 531 (719)
|++..+. +..++.+||++|++.|++... . +.+.|..+..+|+....++.+.+...
T Consensus 87 l~~~~g~---~~~i~~~sG~~a~~~a~~~~~----~------------------~gd~vi~~~~~~~~~~~~~~~~g~~~ 141 (385)
T TIGR01825 87 LAKFKKT---EAALVFQSGFNTNQGVLSALL----R------------------KGDIVLSDELNHASIIDGLRLTKATK 141 (385)
T ss_pred HHHHhCC---CcEEEECcHHHHHHHHHHHhC----C------------------CCCEEEEEccccHHHHHHHHhcCCce
Confidence 9998773 467888999999999888661 1 12456677888887665544432110
Q ss_pred CCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcC
Q 005009 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611 (719)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~ 611 (719)
..++ +.| .+.+++.+.+
T Consensus 142 ------------------------------~~~~--------------~~d------------------~~~l~~~l~~- 158 (385)
T TIGR01825 142 ------------------------------KIYK--------------HAD------------------MDDLDRVLRE- 158 (385)
T ss_pred ------------------------------EEeC--------------CCC------------------HHHHHHHHHh-
Confidence 0000 111 1234555543
Q ss_pred CCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEecccc-C-ccccCccccccccCCCcce----e
Q 005009 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-G-FWRLGVETTADLLGCVPDI----A 685 (719)
Q Consensus 612 ~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqT-G-fGRtG~~~a~e~~gv~PDI----v 685 (719)
....+.++|+++++ ++..|.+.+ +++|.++|++||+++|+||+++ | ++++|. +...++++.+|. .
T Consensus 159 ---~~~~~~~~v~~~~v-~~~tG~~~~----~~~i~~l~~~~~~~li~De~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~ 229 (385)
T TIGR01825 159 ---NPSYGKKLIVTDGV-FSMDGDVAP----LPEIVELAERYGAVTYVDDAHGSGVMGEAGR-GTVHHFGLEDKVDIQVG 229 (385)
T ss_pred ---hccCCCeEEEEecC-CcCCCCccC----HHHHHHHHHHhCCEEEEECcccccCcCCCCC-ccHhhcCCCcCCcEEEE
Confidence 11246789999997 898898776 8999999999999999999995 4 566665 334556666663 5
Q ss_pred eehhccCCCccchheeEeCHHHHhhhc
Q 005009 686 CYGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 686 tlgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
+++|++|+ +.|.+++++++++.+.
T Consensus 230 s~sK~~~~---~gG~~~~~~~~~~~~~ 253 (385)
T TIGR01825 230 TLSKAIGV---VGGYAAGHKELIEYLK 253 (385)
T ss_pred eccHHhhc---CCCEEecCHHHHHHHH
Confidence 89999963 2255788898888774
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=1e-16 Score=175.75 Aligned_cols=224 Identities=16% Similarity=0.127 Sum_probs=157.2
Q ss_pred EEEEeecCCceEEEeCCCCcccceeeeccccccccCCCC-CCCHHHHHHHHHhhhhcccccC----CCCCChHHHHHHHH
Q 005009 377 TVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDA-TLQIELARDMGYTAARFGHVMF----PENVYEPALECAEL 451 (719)
Q Consensus 377 ~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH-~~hP~V~~Av~~q~~~~~~~~~----~~~~~~~~~~Lae~ 451 (719)
.++++++|. |+++ +|+ +|||+.++ .++|| . ||+|++|+++++.++..... .....+...+++++
T Consensus 24 ~~~~~~~g~--~~~~-~g~----~~id~~~~---~~~g~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~ 92 (385)
T PRK05958 24 RPREGGAGR--WLVV-DGR----RMLNFASN---DYLGLAR-HPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEE 92 (385)
T ss_pred cccccCCCc--eeEe-CCc----eEEEeeCC---CcccCCC-CHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHH
Confidence 367777776 7887 999 99999995 46898 6 89999999999988653211 11235678899999
Q ss_pred HHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCC
Q 005009 452 LLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP 531 (719)
Q Consensus 452 L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~ 531 (719)
++++.+. +.++++++|++++..+++.. . ++.+.|.+...+|+.+..++.+.+..
T Consensus 93 la~~~~~---~~~i~~~~g~~~~~~~l~~~----~------------------~~gd~V~~~~~~~~~~~~~~~~~g~~- 146 (385)
T PRK05958 93 LAEWFGA---ERALLFSSGYAANLAVLTAL----A------------------GKGDLIVSDKLNHASLIDGARLSRAR- 146 (385)
T ss_pred HHHHhCC---CcEEEECcHHHHHHHHHHHh----C------------------CCCCEEEEeCccCHHHHHHHHhcCCc-
Confidence 9998863 57788899999999887654 1 12345667778898777665544311
Q ss_pred CCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcC
Q 005009 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611 (719)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~ 611 (719)
...+| .+| .+.+++.+..
T Consensus 147 -----------------------------~~~~~--------------~~d------------------~~~l~~~i~~- 164 (385)
T PRK05958 147 -----------------------------VRRYP--------------HND------------------VDALEALLAK- 164 (385)
T ss_pred -----------------------------eEEeC--------------CCC------------------HHHHHHHHHh-
Confidence 00011 111 1445666652
Q ss_pred CCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEecccc-C-ccccCccccccccC--CCcc---e
Q 005009 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-G-FWRLGVETTADLLG--CVPD---I 684 (719)
Q Consensus 612 ~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqT-G-fGRtG~~~a~e~~g--v~PD---I 684 (719)
...+.++++++++ +...|...+ +++|.++|++||+++|+||+|+ | +|++|..+. ..++ ..+| +
T Consensus 165 ----~~~~~~lvi~~~~-~~~~G~~~~----l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~-~~~~~~~~~~~i~~ 234 (385)
T PRK05958 165 ----WRAGRALIVTESV-FSMDGDLAP----LAELVALARRHGAWLLVDEAHGTGVLGPQGRGLA-AEAGLAGEPDVILV 234 (385)
T ss_pred ----ccCCCeEEEEEec-ccCCCCcCC----HHHHHHHHHHhCCEEEEECcccccccCCCCCchH-HhhCCCCCCceEEE
Confidence 1234789999997 888887766 9999999999999999999995 4 456665442 2223 3567 5
Q ss_pred eeehhccCCCccchheeEeCHHHHhhhc
Q 005009 685 ACYGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 685 vtlgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
.+++|++|. +.|++++++++++.+.
T Consensus 235 ~s~sK~~~~---~Gg~~~~~~~~~~~~~ 259 (385)
T PRK05958 235 GTLGKALGS---SGAAVLGSETLIDYLI 259 (385)
T ss_pred Eechhhccc---CCcEEEcCHHHHHHHH
Confidence 589999974 2266888988887764
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.7e-17 Score=179.17 Aligned_cols=212 Identities=14% Similarity=0.043 Sum_probs=152.3
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCC----CCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFP----ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~----~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E 475 (719)
++++|.| ++++|.+.||+|++|+.++++++++.... ...++...+|+++|+++.|. +..++++||++||+
T Consensus 47 ~~~~~~s---n~yl~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g~---~~~i~~~sG~~a~~ 120 (410)
T PRK13392 47 RVTIWCS---NDYLGMGQHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHGK---ESALLFTSGYVSND 120 (410)
T ss_pred eEEEEEC---CCccCCCCCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHhCC---CCEEEECcHHHHHH
Confidence 8999998 88999977999999999999988653211 11345788999999999883 57888999999999
Q ss_pred HHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccc
Q 005009 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (719)
Q Consensus 476 ~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (719)
.+++...+. . + ..+|..+..+|+++..++..++...
T Consensus 121 ~~i~~l~~~---~---------------~--g~~vi~~~~~h~s~~~~~~~~g~~~------------------------ 156 (410)
T PRK13392 121 AALSTLGKL---L---------------P--GCVILSDALNHASMIEGIRRSGAEK------------------------ 156 (410)
T ss_pred HHHHHHhcC---C---------------C--CCEEEEehhhhHHHHHHHHHcCCeE------------------------
Confidence 999955111 1 1 2466677789998776555443210
Q ss_pred cCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCcc
Q 005009 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (719)
Q Consensus 556 ~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~ 635 (719)
.. ++ ++|. +.+++.++. ...++..+|++|++ ++..|.
T Consensus 157 ----~~--~~--------------~~d~------------------~~l~~~l~~----~~~~~t~~v~i~~~-~n~tG~ 193 (410)
T PRK13392 157 ----QV--FR--------------HNDL------------------ADLEEQLAS----VDPDRPKLIAFESV-YSMDGD 193 (410)
T ss_pred ----EE--Ee--------------CCCH------------------HHHHHHHHh----ccCCCCEEEEEeCC-CCCCcc
Confidence 00 00 1221 223344442 12346779999998 999999
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEecccc-Cc-cccCccccccccCC--Cccee--eehhccCCCccchheeEeCHHHHh
Q 005009 636 HMVDPLFQRILVKECQNRKIPVIFDEVFT-GF-WRLGVETTADLLGC--VPDIA--CYGKLLTGGVIPLAATLATNAVFD 709 (719)
Q Consensus 636 ~~pp~~fl~~Lr~Lc~k~gilLI~DEVqT-Gf-GRtG~~~a~e~~gv--~PDIv--tlgK~LggG~~Plsavl~~~~i~~ 709 (719)
+.+ +++|+++|++||++||+||+|+ |+ |+.|..+ .++.++ .+|++ +++|++|+ +-|.+++++++++
T Consensus 194 ~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~-~~~~~~~~~~div~~tlsK~~g~---~GG~~~~~~~~~~ 265 (410)
T PRK13392 194 IAP----IEAICDLADRYNALTYVDEVHAVGLYGARGGGI-AERDGLMDRIDMIQGTLAKAFGC---LGGYIAASADLID 265 (410)
T ss_pred ccc----HHHHHHHHHHcCCEEEEECCccccCcCCCCCch-hhhccCCCCCcEEEEEChHhhhc---ccchhhcCHHHHH
Confidence 887 9999999999999999999998 64 7777665 355665 57887 99999874 1134678888888
Q ss_pred hhc
Q 005009 710 SFV 712 (719)
Q Consensus 710 ~~~ 712 (719)
.+.
T Consensus 266 ~l~ 268 (410)
T PRK13392 266 FVR 268 (410)
T ss_pred HHH
Confidence 654
|
|
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-16 Score=174.20 Aligned_cols=211 Identities=14% Similarity=0.036 Sum_probs=150.5
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcc-------cccCCCC----CChHHHHHHHHHHhccCCCCCCeEEEeC
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG-------HVMFPEN----VYEPALECAELLLQGVGKGWASRAYFSD 468 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~-------~~~~~~~----~~~~~~~Lae~L~~~~~~~~~~rv~f~~ 468 (719)
+++||.| |.+||++.||++.+++.+++.++. .....+. .++...++.++|+++++. +.+++++
T Consensus 5 ~~~~~~s---~~YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~---~~~l~~~ 78 (370)
T PRK05937 5 LSIDFVT---NDFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGA---PEAFIVP 78 (370)
T ss_pred ceEEeEC---CCccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCC---CeEEEEC
Confidence 7899999 999999999999999999998872 2221122 467899999999999984 5789999
Q ss_pred ChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCccc
Q 005009 469 NGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548 (719)
Q Consensus 469 SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~ 548 (719)
||+.||.+.+.. +. ++.++|..+..+|+++..++..... +
T Consensus 79 sG~~a~~~~~~~----~~------------------~~~d~ii~d~~~H~sv~~~~~~~~~--~---------------- 118 (370)
T PRK05937 79 SGYMANLGLCAH----LS------------------SVTDYVLWDEQVHISVVYSLSVISG--W---------------- 118 (370)
T ss_pred ChHHHHHHHHHH----hC------------------CCCCEEEEEhhhhHHHHHHHHHcCC--c----------------
Confidence 999998543222 21 2347999999999998887665310 0
Q ss_pred CCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccc
Q 005009 549 DPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPV 628 (719)
Q Consensus 549 ~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPV 628 (719)
.++++ ++| .+.+++.++... ....+..+|++|++
T Consensus 119 ------------~~~~~--------------~~d------------------~~~l~~~l~~~~--~~~~~~~~v~v~~v 152 (370)
T PRK05937 119 ------------HQSFR--------------HND------------------LDHLESLLESCR--QRSFGRIFIFVCSV 152 (370)
T ss_pred ------------eEEec--------------CCC------------------HHHHHHHHHhhh--ccCCCcEEEEEecC
Confidence 00111 233 245666665321 11123456889998
Q ss_pred cccCCccccCCHHHHHHHHHHHHhcCCcEEEecccc-C-ccccCccccccccC---CCcceeeehhccCC-CccchheeE
Q 005009 629 VHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-G-FWRLGVETTADLLG---CVPDIACYGKLLTG-GVIPLAATL 702 (719)
Q Consensus 629 iqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqT-G-fGRtG~~~a~e~~g---v~PDIvtlgK~Lgg-G~~Plsavl 702 (719)
+++.|.+.| +++|.++|+++|++||+||+|+ | +|++|+.+.. .++ +.+|+.|++|++|+ | ++++
T Consensus 153 -~s~~G~i~p----l~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~-~~~~~~~~~~~~tlsK~~g~~G----~~vl 222 (370)
T PRK05937 153 -YSFKGTLAP----LEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCH-SLGYENFYAVLVTYSKALGSMG----AALL 222 (370)
T ss_pred -CCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCCchHH-hhCCCCCcEEEEechhhhhcCc----eEEE
Confidence 999999998 9999999999999999999997 5 7778764332 223 34788999999975 4 4567
Q ss_pred eCHHHHhhhc
Q 005009 703 ATNAVFDSFV 712 (719)
Q Consensus 703 ~~~~i~~~~~ 712 (719)
+.+++.+.+.
T Consensus 223 ~~~~~~~~~~ 232 (370)
T PRK05937 223 SSSEVKQDLM 232 (370)
T ss_pred cCHHHHHHHH
Confidence 7777655543
|
|
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.6e-16 Score=159.97 Aligned_cols=228 Identities=16% Similarity=0.150 Sum_probs=172.8
Q ss_pred EEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhccccc----CCCCCChHHHHHHHHH
Q 005009 377 TVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELL 452 (719)
Q Consensus 377 ~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~----~~~~~~~~~~~Lae~L 452 (719)
.|+.+..|..+. ++|. -+.+|.|++ |++||.+.||+|.+|-++.++.++... +...+...+..|+.+|
T Consensus 50 rVi~s~q~p~i~---v~G~--~k~ilnFca---NnYLGLsshPeii~a~~~aleeyGaGlssvrfIcGtq~iHk~LE~ki 121 (417)
T KOG1359|consen 50 RVITSRQGPTIQ---VKGS--DKKILNFCA---NNYLGLSSHPEIINAGQKALEEYGAGLSSVRFICGTQDIHKLLESKI 121 (417)
T ss_pred eEEeecccceEE---Eecc--ccceeeecc---cccccccCChHHHHHHHHHHHHhCCCccceeEEecchHHHHHHHHHH
Confidence 377888887433 4443 126999998 999999999999999999999987643 4456788999999999
Q ss_pred HhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCC
Q 005009 453 LQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY 532 (719)
Q Consensus 453 ~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~ 532 (719)
+++.+. +..+++.|+.+||.+++...+ + ...-|.-+.-.|.+....+.+.. .|
T Consensus 122 Aqfh~r---ED~ilypscfdANag~feail---~-------------------pedAvfSDeLNhASIIdGirLck--ry 174 (417)
T KOG1359|consen 122 AQFHGR---EDTILYPSCFDANAGAFEAIL---T-------------------PEDAVFSDELNHASIIDGIRLCK--RY 174 (417)
T ss_pred HHHhCC---CceEEeccccccchHHHHHhc---C-------------------hhhhhhccccccchhhhhhHHHh--hh
Confidence 998874 678899999999999988772 1 12345556677887777776653 12
Q ss_pred CCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCC
Q 005009 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (719)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~ 612 (719)
++. | ...++..+.+
T Consensus 175 ~h~----------------------------------------------d------------------v~~l~~~l~~-- 188 (417)
T KOG1359|consen 175 RHV----------------------------------------------D------------------VFDLEHCLIS-- 188 (417)
T ss_pred ccc----------------------------------------------h------------------hHHHHHHHHH--
Confidence 110 0 0112222221
Q ss_pred CCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccc-cC-ccccCccccccccCC--Cccee--e
Q 005009 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVF-TG-FWRLGVETTADLLGC--VPDIA--C 686 (719)
Q Consensus 613 ~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVq-TG-fGRtG~~~a~e~~gv--~PDIv--t 686 (719)
...-+.-.|..+.+ +++.|.+.| ++++.+|++|||.||.+||.| || ||-||. ...+.+|+ ++||+ |
T Consensus 189 --a~k~r~klv~TDg~-FSMDGdiaP----l~ei~~La~kYgaLlfiDecHaTgf~G~tGr-Gt~E~~~vm~~vdiinsT 260 (417)
T KOG1359|consen 189 --ACKMRLKLVVTDGV-FSMDGDIAP----LEEISQLAKKYGALLFIDECHATGFFGETGR-GTAEEFGVMGDVDIINST 260 (417)
T ss_pred --hhhheEEEEEecce-eccCCCccc----HHHHHHHHHhcCcEEEEeecccceeecCCCC-ChHHHhCCCCcceehhhh
Confidence 12346778999998 999999999 999999999999999999999 56 477775 45577887 68887 9
Q ss_pred ehhccCC---CccchheeEeCHHHHhhhcCCCCCC
Q 005009 687 YGKLLTG---GVIPLAATLATNAVFDSFVGDSKKR 718 (719)
Q Consensus 687 lgK~Lgg---G~~Plsavl~~~~i~~~~~~~~~~~ 718 (719)
+||++|| || +.++..+.+.+.+.+++|
T Consensus 261 LgKAlGga~GGy-----ttgp~~li~llrqr~Rpy 290 (417)
T KOG1359|consen 261 LGKALGGASGGY-----TTGPKPLISLLRQRSRPY 290 (417)
T ss_pred hhhhhcCCCCCC-----ccCChhHHHHHHhcCCce
Confidence 9999994 66 999999999998888776
|
|
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.6e-15 Score=162.77 Aligned_cols=229 Identities=16% Similarity=0.117 Sum_probs=152.6
Q ss_pred EEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccC----CCCCChHHHHHHHHHH
Q 005009 378 VIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF----PENVYEPALECAELLL 453 (719)
Q Consensus 378 vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~----~~~~~~~~~~Lae~L~ 453 (719)
.+++++|. ++||.+|+ .||||++| .++||..||++.+++++++.+..+... .....+...++++.|+
T Consensus 27 ~~~~~~~~--~~~~~~g~----~~i~l~~~---~~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~la 97 (397)
T PRK06939 27 VITSPQGA--DITVADGK----EVINFCAN---NYLGLANHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLA 97 (397)
T ss_pred cccCCCCc--eEEecCCC----eEEEeecc---CccccCCCHHHHHHHHHHHHHcCCCCcccccccCCcHHHHHHHHHHH
Confidence 35566665 79999999 99999884 568995499999999999987644221 1234566778999999
Q ss_pred hccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCC
Q 005009 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (719)
Q Consensus 454 ~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~ 533 (719)
+..+. +..+++++|++|++.+++... +.| ..||..+ .+|.....++.+.+..
T Consensus 98 ~~~g~---~~~i~~tsG~~a~~~~~~~l~-----~~g----------------d~vi~~~-~~~~~~~~~~~~~~~~--- 149 (397)
T PRK06939 98 KFLGT---EDAILYSSCFDANGGLFETLL-----GKE----------------DAIISDA-LNHASIIDGVRLCKAK--- 149 (397)
T ss_pred HHhCC---CcEEEEcChHHHHHHHHHHhC-----CCC----------------CEEEEEh-hhhHHHHHHHHhcCCc---
Confidence 98773 456778889999999887551 111 2455544 4554333322222110
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
.+.+| ++| .+.+++.+.+..
T Consensus 150 ---------------------------~~~~~--------------~~d------------------~~~l~~~i~~~~- 169 (397)
T PRK06939 150 ---------------------------RYRYA--------------NND------------------MADLEAQLKEAK- 169 (397)
T ss_pred ---------------------------eEEeC--------------CCC------------------HHHHHHHHHhhh-
Confidence 00111 112 133444443210
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEecccc-Cc-cccCccccccccCC--Cccee--ee
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GF-WRLGVETTADLLGC--VPDIA--CY 687 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqT-Gf-GRtG~~~a~e~~gv--~PDIv--tl 687 (719)
....+..+|+++++ ++..|...+ +++|.++|++||++||+||++. |+ ++.|.. ....+++ .+|++ ++
T Consensus 170 -~~~~~~~~v~~~~v-~~~~G~~~~----~~~l~~la~~~~~~li~De~~~~g~~~~~~~~-~~~~~~~~~~~~i~~~S~ 242 (397)
T PRK06939 170 -EAGARHKLIATDGV-FSMDGDIAP----LPEICDLADKYDALVMVDDSHAVGFVGENGRG-TVEHFGVMDRVDIITGTL 242 (397)
T ss_pred -ccCCCCeEEEEecC-cCCCCCcCC----HHHHHHHHHHhCCEEEEECcccccCcCCCCCC-HHHHcCCCCCCcEEEEEC
Confidence 11236789999997 888887655 9999999999999999999994 53 445542 3344565 46888 89
Q ss_pred hhccCCCccchheeEeCHHHHhhhc
Q 005009 688 GKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 688 gK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
+|.++|+ ++|.+++++++++.+.
T Consensus 243 sK~~~g~--r~G~v~~~~~~~~~l~ 265 (397)
T PRK06939 243 GKALGGA--SGGYTAGRKEVIDWLR 265 (397)
T ss_pred HHHhCcc--CceEEEeCHHHHHHHH
Confidence 9999754 6788999999988775
|
|
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.4e-15 Score=161.37 Aligned_cols=231 Identities=14% Similarity=0.122 Sum_probs=154.8
Q ss_pred EEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhccccc-CCC---CCChHHHHHHHHH
Q 005009 377 TVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM-FPE---NVYEPALECAELL 452 (719)
Q Consensus 377 ~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~-~~~---~~~~~~~~Lae~L 452 (719)
.++.++.|. ++++.+|+ +||||.++ .++|++.||++++++.+++.+++... ... ...+...+|.++|
T Consensus 22 ~~~~~~~~~--~~~~~~g~----~~i~~~~~---~~lg~~~~~~v~~~~~~~~~~~~~~~~~s~~~~G~~~~~~~le~~i 92 (393)
T TIGR01822 22 RIITSPQGA--DIRVADGR----EVLNFCAN---NYLGLSSHPDLIQAAKDALDEHGFGMSSVRFICGTQDIHKELEAKI 92 (393)
T ss_pred cccccCCCc--eEEecCCc----eEEEeeCC---CccccCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHH
Confidence 345565665 68888999 99999995 68999989999999999998864321 111 2256678899999
Q ss_pred HhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCC
Q 005009 453 LQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY 532 (719)
Q Consensus 453 ~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~ 532 (719)
++.++. +.++.++||++|+.+++... . ..| ..||+ +.-+|.+....+.+.+...
T Consensus 93 a~~~g~---~~~ii~~~~~~a~~~~~~~l----~-~~g----------------d~vi~-~~~~~~s~~~~~~~~~~~~- 146 (393)
T TIGR01822 93 AAFLGT---EDTILYASCFDANGGLFETL----L-GAE----------------DAIIS-DALNHASIIDGVRLCKAKR- 146 (393)
T ss_pred HHHhCC---CcEEEECchHHHHHHHHHHh----C-CCC----------------CEEEE-eccccHHHHHHHHhcCCce-
Confidence 999884 46777799999999766544 1 111 24555 4555554443333321100
Q ss_pred CCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCC
Q 005009 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (719)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~ 612 (719)
+.++ ++|. +.+++.+.+..
T Consensus 147 -----------------------------~~~~--------------~~d~------------------~~l~~~i~~~~ 165 (393)
T TIGR01822 147 -----------------------------YRYA--------------NNDM------------------ADLEAQLKEAR 165 (393)
T ss_pred -----------------------------EEeC--------------CCCH------------------HHHHHHHHhhh
Confidence 0000 1221 34555554310
Q ss_pred CCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEecccc-Cc-cccCccccccccCC--Cccee--e
Q 005009 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GF-WRLGVETTADLLGC--VPDIA--C 686 (719)
Q Consensus 613 ~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqT-Gf-GRtG~~~a~e~~gv--~PDIv--t 686 (719)
....+...|+++++ +...|.+.+ +++|.++|++||++||+||+|. |+ |..|.. ..+..++ .+|++ +
T Consensus 166 --~~~~~~~~v~~~~v-~~~tG~~~~----l~~i~~la~~~~~~li~De~~~~g~~~~~~~~-~~~~~~~~~~~di~~~s 237 (393)
T TIGR01822 166 --AAGARHRLIATDGV-FSMDGVIAP----LDEICDLADKYDALVMVDECHATGFLGPTGRG-SHELCGVMGRVDIITGT 237 (393)
T ss_pred --hcCCCceEEEEeCC-ccCCCCcCC----HHHHHHHHHHcCCEEEEECCccccCcCCCCCc-hHHhcCCCCCCeEEEEE
Confidence 11236788999997 899898877 9999999999999999999993 43 344442 2334555 46887 7
Q ss_pred ehhccCCCccchheeEeCHHHHhhhcC
Q 005009 687 YGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 687 lgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
++|.++|+ .+|.+++++++.+.+..
T Consensus 238 ~sK~l~g~--r~G~~~~~~~~~~~l~~ 262 (393)
T TIGR01822 238 LGKALGGA--SGGFTTARKEVVELLRQ 262 (393)
T ss_pred ChHHhhCC--CcEEEEeCHHHHHHHHH
Confidence 89999863 67889999999887643
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-14 Score=155.83 Aligned_cols=223 Identities=13% Similarity=0.094 Sum_probs=150.3
Q ss_pred EEeecCCceEEEeCCCCcccceeeeccccccccCCCC-CCCHHHHHHHHHhhhhcccccCC----CCCChHHHHHHHHHH
Q 005009 379 IDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDA-TLQIELARDMGYTAARFGHVMFP----ENVYEPALECAELLL 453 (719)
Q Consensus 379 i~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH-~~hP~V~~Av~~q~~~~~~~~~~----~~~~~~~~~Lae~L~ 453 (719)
++++.|. +++ .+|+ +||||.++ .++|| . ||+|++++++++.+++..... ....+...++.+.|+
T Consensus 3 ~~~~~~~--~~~-~~g~----~~id~~~~---~~~g~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la 71 (360)
T TIGR00858 3 LDRGPGP--EVV-RDGR----RLLNFSSN---DYLGLAS-HPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELA 71 (360)
T ss_pred cccCCCC--eEE-ECCc----eEEecccC---CcccCCC-CHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHH
Confidence 3455665 565 7899 99999996 57996 6 999999999999876542110 122466788999999
Q ss_pred hccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCC
Q 005009 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (719)
Q Consensus 454 ~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~ 533 (719)
++.+. +..+++++|++++..+++.+ . . +.+.|.....+|+....++...+..
T Consensus 72 ~~~~~---~~~i~~~~G~~~~~~~l~~~----~-~-----------------~gd~v~~~~~~~~~~~~~~~~~g~~--- 123 (360)
T TIGR00858 72 EWKGT---EAALLFSSGYLANVGVISAL----V-G-----------------KGDLILSDALNHASLIDGCRLSGAR--- 123 (360)
T ss_pred HHhCC---CCEEEECchHHHHHHHHHHh----C-C-----------------CCCEEEEEccccHHHHHHHHhcCCc---
Confidence 98763 46778889999999887654 1 1 1234555666777655544433210
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
.+.+| ..| .+.+++.+.+
T Consensus 124 ---------------------------~~~~~--------------~~d------------------~~~l~~~~~~--- 141 (360)
T TIGR00858 124 ---------------------------VRRYR--------------HND------------------VEHLERLLEK--- 141 (360)
T ss_pred ---------------------------eEEec--------------CCC------------------HHHHHHHHHH---
Confidence 00011 111 1445666653
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc--ccccccCCCcc-----eee
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE--TTADLLGCVPD-----IAC 686 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~--~a~e~~gv~PD-----Ivt 686 (719)
....+.++|+++++ ....|...+ +++|.++|++||+++|+||+++ +|+.+.. ....++++.|| +.+
T Consensus 142 -~~~~~~~~v~~~~~-~~~~G~~~~----~~~i~~l~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~~i~i~s 214 (360)
T TIGR00858 142 -NRGERRKLIVTDGV-FSMDGDIAP----LPQLVALAERYGAWLMVDDAHG-TGVLGEDGRGTLEHFGLKPEPVDIQVGT 214 (360)
T ss_pred -cccCCCeEEEEeCC-ccCCCCCcC----HHHHHHHHHHcCcEEEEECccc-ccCcCCCCCchHHhcCCCccCCcEEEEe
Confidence 11135689999997 888887766 8999999999999999999996 5554431 22345677665 558
Q ss_pred ehhccCCCccchheeEeCHHHHhhhc
Q 005009 687 YGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 687 lgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
++|++++ +.|.+++++++++.+.
T Consensus 215 ~sK~~~~---~gG~~~~~~~~~~~~~ 237 (360)
T TIGR00858 215 LSKALGS---YGAYVAGSQALIDYLI 237 (360)
T ss_pred chhhhhc---cCcEEEcCHHHHHHHH
Confidence 9999975 2256888888887764
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.8e-13 Score=156.31 Aligned_cols=245 Identities=13% Similarity=0.122 Sum_probs=158.1
Q ss_pred CCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCC-CHHHHHHHHHhhhhccccc---CC-CCCChHHH
Q 005009 372 PEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATL-QIELARDMGYTAARFGHVM---FP-ENVYEPAL 446 (719)
Q Consensus 372 ~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~-hP~V~~Av~~q~~~~~~~~---~~-~~~~~~~~ 446 (719)
|.....++++....+.+-+...|+ .+++|+|.| +++||.++ |+.+.+++.+.+++++..+ .. ...++...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~n~~s---~~YLgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ 149 (489)
T PLN02483 75 PDAWFDVVERVSNDNNKTLKRTTK--TRRCLNLGS---YNYLGFAAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHR 149 (489)
T ss_pred CCCeEEEEEeecCCCCceEEecCC--CceEEEeec---CCccCcCCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHH
Confidence 334455777766554333333333 248999999 89999984 5778889998888877532 11 12478899
Q ss_pred HHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccc
Q 005009 447 ECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA 526 (719)
Q Consensus 447 ~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galsl 526 (719)
+|.++|+++.+. +..+++++|+.+|..++.... . +.+.|..+..+|.+...++..
T Consensus 150 ele~~lA~~~g~---~~ai~~~~G~~an~~~i~al~-----~-----------------~Gd~Vi~d~~~h~s~~~~~~~ 204 (489)
T PLN02483 150 ELEELVARFVGK---PAAIVFGMGYATNSTIIPALI-----G-----------------KGGLIISDSLNHNSIVNGARG 204 (489)
T ss_pred HHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHhC-----C-----------------CCCEEEEcchhhHHHHHHHHH
Confidence 999999999984 456677889999987776541 1 123445666666655554444
Q ss_pred cCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHH
Q 005009 527 QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQ 606 (719)
Q Consensus 527 t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~ 606 (719)
+|.. ...+| ++|. +++ .+.+++
T Consensus 205 ~Ga~------------------------------v~~~~--------------~~d~----------~~l----e~~l~~ 226 (489)
T PLN02483 205 SGAT------------------------------IRVFQ--------------HNTP----------SHL----EEVLRE 226 (489)
T ss_pred cCCe------------------------------EEEEe--------------CCCH----------HHH----HHHHHh
Confidence 3311 00111 2221 011 122232
Q ss_pred HHhcCCC-CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEecccc-C-ccccCccccccccCCCc-
Q 005009 607 NLLQNPG-LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-G-FWRLGVETTADLLGCVP- 682 (719)
Q Consensus 607 ~l~~~~~-~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqT-G-fGRtG~~~a~e~~gv~P- 682 (719)
.+..... ...+.....|++|++ .++.|.+.+ +++|.++|++||++||+||+|+ | +|++|.. ..+++++.|
T Consensus 227 ~i~~~~p~t~~p~~k~livve~v-~s~~G~~~~----l~~I~~la~~~~~~livDEa~s~g~~G~~G~g-~~~~~~v~~~ 300 (489)
T PLN02483 227 QIAEGQPRTHRPWKKIIVIVEGI-YSMEGELCK----LPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRG-VCELLGVDPA 300 (489)
T ss_pred hhhccccccccCCceEEEEECCC-CCCCCcccC----HHHHHHHHHHcCCEEEEECcCccCccCCCCCc-hHHhcCCCcc
Confidence 2211000 011233468899998 899998887 9999999999999999999996 2 5777765 457778755
Q ss_pred --cee--eehhccCCCccchheeEeCHHHHhhhcC
Q 005009 683 --DIA--CYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 683 --DIv--tlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
||+ +++|++|+ +.|.+++++++++.+..
T Consensus 301 ~~dI~~~SfSKs~g~---~GG~i~~~~~li~~l~~ 332 (489)
T PLN02483 301 DVDIMMGTFTKSFGS---CGGYIAGSKELIQYLKR 332 (489)
T ss_pred cCcEEEEecchhccc---CceEEEcCHHHHHHHHH
Confidence 777 99999973 11448889999988764
|
|
| >COG0857 Pta BioD-like N-terminal domain of phosphotransacetylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-13 Score=150.61 Aligned_cols=198 Identities=20% Similarity=0.197 Sum_probs=129.4
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccc--cCCCCCChHHHHHHhcCCCccccCCCcccccc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQ--TGYPHDSDSRFLFTKLPSLSLRRNFPSSLILS 113 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~--~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 113 (719)
||++|||.+|++++|||.|++||+++|. ++|.+|+|||||. +|...+...+.+.+..
T Consensus 1 m~~~l~l~p~~~~~G~tsi~lgLl~~l~-----~k~~kva~~kPI~~~~~~~~~~~~e~~~~~~---------------- 59 (354)
T COG0857 1 MSRTLLLIPTETGVGKTSISLGLLRALE-----QKGLKVAYFKPIGTRTGKDADDLTEEDIRAT---------------- 59 (354)
T ss_pred CcceEEEeccCCCccHHHHHHHHHHHHH-----HcCceeEEEeccccccCCccchhHHHHHHHh----------------
Confidence 6889999999999999999999999994 8999999999997 5544333322221111
Q ss_pred chhhhhhHHHhhhhccCCCCCCCCccCCcccccccccccccccCCCCCccccccccceeecccCcChHHHHhHh-c-CCC
Q 005009 114 NSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERE-S-GGV 191 (719)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~-~-~~~ 191 (719)
+.++.+.+ +..+. .+-.+. + ...
T Consensus 60 ----------------~~~l~~~~---------------------------------~~~~~------~ae~L~~~~~~d 84 (354)
T COG0857 60 ----------------SSSLTYAE---------------------------------PLVLS------FAEVLLSTGQDD 84 (354)
T ss_pred ----------------hhhcccCc---------------------------------ccchh------hHHHHhccccch
Confidence 00111110 11111 111111 0 123
Q ss_pred CCHHHHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHH----H
Q 005009 192 VGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISG----T 267 (719)
Q Consensus 192 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~----~ 267 (719)
..+++|.+.|.++.+. +|++++||-==..........|.+||+.|+++++||++..+-+..+ .
T Consensus 85 ~l~e~i~~~y~e~~~~-------------~~~vv~~g~~~~~~~~~~~~ln~~iA~~Lna~~vlva~~~~~~~~~~~~~i 151 (354)
T COG0857 85 VLLEEILANYAELAKD-------------ADVVVVEGDVPTREGPYALDLNYEIAKNLNAAAVLVARALLVTPYELKSRV 151 (354)
T ss_pred HHHHHHHHHHHHHhcc-------------CceEEeccceeccccCccccccHHHHhhcCcchhhccccccCChhhhhhHH
Confidence 3466777777776653 8899999932111112244789999999999999999977655444 4
Q ss_pred HHHHHHHHhCCCcEEEEEEccCC----CCCHHHHHHhhcC-CCcEEe-cCCCCCCCcchhh
Q 005009 268 ISAYESLKLRGYDVVAVVFEDHG----LVNEVPLMSYLRN-RVPVLV-LPPLPQDSSNDLM 322 (719)
Q Consensus 268 ~~~~~~l~~~~~~v~gvi~N~~~----~~~~~~l~~~~~~-~~pvlg-lP~~~~~~~~~~~ 322 (719)
..+...+...+.++.|||+|+.. ......+.+++++ +..+++ +|...-+.+..+.
T Consensus 152 ~~~~~~~~~~~~~l~gVv~N~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ll~~~~v~ 212 (354)
T COG0857 152 ELALAAFGAAGNNLAGVVINNAPVDEAGRTEDLLAEFLESSGIAVVGVLPPNRLLRSSPVR 212 (354)
T ss_pred HHHHHHhcccCCceEEEEecCCChhhhhhhhhHHHHHhhhccccccccCCHHHHhcCCcHH
Confidence 44555555455589999999762 2345667777776 888999 8887766655544
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-12 Score=141.44 Aligned_cols=212 Identities=13% Similarity=0.074 Sum_probs=139.8
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhccccc----CCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~----~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E 475 (719)
+||.|++ +.+|||.+||+|.+|++++++++.+.. ......+...++.+.|+++.+. +..++++||++|+.
T Consensus 2 ~~~~~~~---~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~---~~~iv~~sg~~a~~ 75 (349)
T cd06454 2 KVLNFCS---NDYLGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHGK---EAALVFSSGYAAND 75 (349)
T ss_pred Cceeccc---CCccccCCCHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhCC---CCEEEeccHHHHHH
Confidence 7899998 899999999999999999998865321 0113467778999999998873 45788899999999
Q ss_pred HHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccc
Q 005009 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (719)
Q Consensus 476 ~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (719)
++++.+. .+| ..|+ ....+|+....++...|..
T Consensus 76 ~~~~~~~-----~~g----------------d~Vl-~~~~~~~~~~~~~~~~g~~------------------------- 108 (349)
T cd06454 76 GVLSTLA-----GKG----------------DLII-SDSLNHASIIDGIRLSGAK------------------------- 108 (349)
T ss_pred HHHHHhc-----CCC----------------CEEE-EehhhhHHHHHHHHHcCCc-------------------------
Confidence 8886551 111 2344 4555676544332221110
Q ss_pred cCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCcc
Q 005009 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (719)
Q Consensus 556 ~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~ 635 (719)
...+| ..| .+.+++.+.+. ..+.+.++|+++++ +...|.
T Consensus 109 -----~~~~~--------------~~~------------------~~~le~~i~~~---~~~~~~~~v~~~~~-~~~tG~ 147 (349)
T cd06454 109 -----KRIFK--------------HND------------------MEDLEKLLREA---RRPYGKKLIVTEGV-YSMDGD 147 (349)
T ss_pred -----eEEec--------------CCC------------------HHHHHHHHHHh---hccCCCeEEEEecc-ccCCCC
Confidence 00011 001 13455555531 11356789999997 888898
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc-cccccC---CCccee--eehhccCCCccchheeEeCHHHHh
Q 005009 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLG---CVPDIA--CYGKLLTGGVIPLAATLATNAVFD 709 (719)
Q Consensus 636 ~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~-a~e~~g---v~PDIv--tlgK~LggG~~Plsavl~~~~i~~ 709 (719)
..+ +++|.++|++||+++|+||++. +|..+... ....+. ..+|++ +++|.++. +.|.+++++++++
T Consensus 148 ~~~----~~~i~~~~~~~~~~livD~a~~-~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~---~gG~i~~~~~~~~ 219 (349)
T cd06454 148 IAP----LPELVDLAKKYGAILFVDEAHS-VGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGA---VGGYIAGSKELID 219 (349)
T ss_pred ccC----HHHHHHHHHHcCCEEEEEcccc-ccccCCCCCChhhhccccccCcEEEeechhhhcc---cCCEEECCHHHHH
Confidence 776 8999999999999999999994 44443211 111222 245776 68999974 3356888888887
Q ss_pred hhcC
Q 005009 710 SFVG 713 (719)
Q Consensus 710 ~~~~ 713 (719)
.+..
T Consensus 220 ~~~~ 223 (349)
T cd06454 220 YLRS 223 (349)
T ss_pred HHHH
Confidence 6543
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-12 Score=139.56 Aligned_cols=207 Identities=16% Similarity=0.061 Sum_probs=156.0
Q ss_pred ccCCCCCCCHHHHHHHHHhhhhccccc----CCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHh
Q 005009 410 TQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKF 485 (719)
Q Consensus 410 ~~~lGH~~hP~V~~Av~~q~~~~~~~~----~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~ 485 (719)
|.+||.+.||+|.+|+++.+++++... ..+..+..+++|++.|+++..+ +.+++++|-.-||++.|-..-+.
T Consensus 179 NDYLgms~Hp~V~~A~~~tl~~hG~GAGGTRNIsG~s~~hv~LE~eLA~LHqK---~aALlFsSCfVANDstLftLak~- 254 (570)
T KOG1360|consen 179 NDYLGMSRHPEVLDAMHDTLDRHGAGAGGTRNISGHSKHHVRLEAELADLHQK---EAALLFSSCFVANDSTLFTLAKK- 254 (570)
T ss_pred CccccccCChHHHHHHHHHHHHcCCCcCCccccCCCCchhhhHHHHHHHHhcC---cceeeeeeeeeccchHHHHHHHH-
Confidence 667888889999999999999987643 1234577899999999998874 56778888899999998766222
Q ss_pred hccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCc
Q 005009 486 SFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP 565 (719)
Q Consensus 486 ~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P 565 (719)
. ...+|.-+.+.|.+....+.-++-+.+
T Consensus 255 --l-----------------pgcei~SD~gNHASMI~GIrns~v~K~--------------------------------- 282 (570)
T KOG1360|consen 255 --L-----------------PGCEIFSDEGNHASMIQGIRNSRVPKH--------------------------------- 282 (570)
T ss_pred --C-----------------CCcEEeccccchHHHHHHhhhcCCcce---------------------------------
Confidence 1 236788899999987765554432110
Q ss_pred chhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHH
Q 005009 566 EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRI 645 (719)
Q Consensus 566 ~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~ 645 (719)
- +++||. +.|+++|+.+ .+...--|-+|.| .++.|.+.| +++
T Consensus 283 -I----------FrHND~------------------~hL~~lL~~~----~~svPKivAFEtV-hSM~Gavcp----lee 324 (570)
T KOG1360|consen 283 -I----------FRHNDL------------------DHLEQLLQSS----PKSVPKIVAFETV-HSMDGAVCP----LEE 324 (570)
T ss_pred -e----------eccCCH------------------HHHHHHHHhC----CCCCCceEEEeee-eccCCCcCC----HHH
Confidence 0 125663 6788888864 2333345568998 999999999 999
Q ss_pred HHHHHHhcCCcEEEeccccCccccCcc--ccccccCC--Cccee--eehhccC--CCccchheeEeCHHHHhhhcCCCC
Q 005009 646 LVKECQNRKIPVIFDEVFTGFWRLGVE--TTADLLGC--VPDIA--CYGKLLT--GGVIPLAATLATNAVFDSFVGDSK 716 (719)
Q Consensus 646 Lr~Lc~k~gilLI~DEVqTGfGRtG~~--~a~e~~gv--~PDIv--tlgK~Lg--gG~~Plsavl~~~~i~~~~~~~~~ 716 (719)
|.++++|||++-.+|||+. .|-.|.. +.-++-|| +-||+ |+||+.| ||| ++.+..+.|.+++-..
T Consensus 325 lcDvah~yGAiTFlDEVHA-VGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGcVGGY-----IAat~~LvDmiRSyAa 397 (570)
T KOG1360|consen 325 LCDVAHKYGAITFLDEVHA-VGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGCVGGY-----IAATRKLVDMIRSYAA 397 (570)
T ss_pred HHHHHHHhCceeeeehhhh-hccccCCCCCccccCCcchhhhhcccchhhhcccccce-----ehhhhhHHHHHHHhcC
Confidence 9999999999999999996 4556663 33466777 67998 8999999 687 8899999998876443
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.7e-12 Score=139.34 Aligned_cols=209 Identities=12% Similarity=0.039 Sum_probs=133.3
Q ss_pred ccccccCCCCCCCHHHHHHHHHhhhhcc-cccC-----CCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHH
Q 005009 406 ASWWTQGPDATLQIELARDMGYTAARFG-HVMF-----PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (719)
Q Consensus 406 sg~~~~~lGH~~hP~V~~Av~~q~~~~~-~~~~-----~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlK 479 (719)
.+++....||+ ||++++++..|+ ... +... .....+...+++++|+++.+.+ .+.+.|+++|+++++.+++
T Consensus 23 ~~l~~g~~~~~-~p~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~-~~~v~~~~~g~~~~~~~~~ 99 (398)
T cd00613 23 SFLGSGTYKHN-PPAVIKRNILEN-EFYTAYTPYQPEISQGRLQALFELQTMLCELTGMD-VANASLQDEATAAAEAAGL 99 (398)
T ss_pred ccccccccCCc-CcHHHHHHhccc-cCcccCCCCChhhhhhHHHHHHHHHHHHHHHHCCC-ccceeccCchHHHHHHHHH
Confidence 45667789999 999999988887 321 1111 1123356678999999988743 3478888888888899999
Q ss_pred HHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcc
Q 005009 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (719)
Q Consensus 480 lA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (719)
.++ ... ++.+.|.+...+||++..++.+.+... +. ..
T Consensus 100 ~~~-~~~------------------~~gd~Vl~~~~~h~~~~~~~~~~~~~~--g~----------------------~~ 136 (398)
T cd00613 100 AAI-RAY------------------HKRNKVLVPDSAHPTNPAVARTRGEPL--GI----------------------EV 136 (398)
T ss_pred HHH-hcc------------------cCCCEEEEcCccCcchHHHHHHhcccC--Cc----------------------EE
Confidence 883 221 123566678889999988887765310 00 00
Q ss_pred eeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCC
Q 005009 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (719)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (719)
..++.++.. ..| .+.+++.+. .++++|++++. . ..|.+
T Consensus 137 ~~v~~~~~~-----------~~d------------------~~~l~~~i~--------~~t~~viv~~~-~-~~G~~--- 174 (398)
T cd00613 137 VEVPSDEGG-----------TVD------------------LEALKEEVS--------EEVAALMVQYP-N-TLGVF--- 174 (398)
T ss_pred EEeccCCCC-----------CcC------------------HHHHHHhcC--------CCeEEEEEECC-C-CCcee---
Confidence 111111000 000 244555553 36889999986 5 56777
Q ss_pred HHHHHHHHHHHHhcCCcEEEeccccC---ccccCccccccccCCCcceee--eh---hccCCCccchheeE-eCHHHHhh
Q 005009 640 PLFQRILVKECQNRKIPVIFDEVFTG---FWRLGVETTADLLGCVPDIAC--YG---KLLTGGVIPLAATL-ATNAVFDS 710 (719)
Q Consensus 640 ~~fl~~Lr~Lc~k~gilLI~DEVqTG---fGRtG~~~a~e~~gv~PDIvt--lg---K~LggG~~Plsavl-~~~~i~~~ 710 (719)
.+++++|+++|++||++||+|++|++ ++++|.+ .+|+++ +. |++|+| .|.++++ +++++.+.
T Consensus 175 ~~~l~~i~~la~~~g~~livD~~~~~~~~~~~~~~~--------~~d~~~~s~~K~~~p~g~G-gp~~g~l~~~~~~~~~ 245 (398)
T cd00613 175 EDLIKEIADIAHSAGALVYVDGDNLNLTGLKPPGEY--------GADIVVGNLQKTGVPHGGG-GPGAGFFAVKKELVRF 245 (398)
T ss_pred cchHHHHHHHHHhcCCEEEEEeccccccCCCChHHc--------CCCEEEeeccccCCCCCCC-CCceeEEEEhhhhHhh
Confidence 36789999999999999999998853 3334432 489986 33 555656 3655554 55677665
Q ss_pred h
Q 005009 711 F 711 (719)
Q Consensus 711 ~ 711 (719)
+
T Consensus 246 ~ 246 (398)
T cd00613 246 L 246 (398)
T ss_pred C
Confidence 4
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.6e-10 Score=126.52 Aligned_cols=196 Identities=12% Similarity=0.032 Sum_probs=130.9
Q ss_pred ccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccc
Q 005009 410 TQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDH 489 (719)
Q Consensus 410 ~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~ 489 (719)
+++||.+.||+|++|..+.+++++ ..++.+.+|.++|+++.+.+ -+.+++++||++||..++.... ..
T Consensus 27 ~~ylgl~~~~~~~~~~~~~~~~~~------g~~~~~~~Le~~lA~~~g~~-~e~ilv~~gg~~a~~~~~~al~-----~~ 94 (346)
T TIGR03576 27 YDLTGLAGGFKIDEEDLELLETYV------GPAIFEEKVQELGREHLGGP-EEKILVFNRTSSAILATILALE-----PP 94 (346)
T ss_pred cccccCCCChhHHHHHHHHHHHhc------CCHHHHHHHHHHHHHHcCCC-cceEEEECCHHHHHHHHHHHhC-----CC
Confidence 447888889999999999999884 24688999999999998742 2789999999999999998661 11
Q ss_pred cccccccCCCccccCcceEEEE--EeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcch
Q 005009 490 EVLVDFLGKDTTEKCIELKVLA--LKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEW 567 (719)
Q Consensus 490 G~~~~~~~~~~~~~~~r~kII~--~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~ 567 (719)
| ..|+. .+.-+|.+....+.+.|...+
T Consensus 95 g----------------d~Vli~~~d~p~~~s~~~~~~l~ga~~~----------------------------------- 123 (346)
T TIGR03576 95 G----------------RKVVHYLPEKPAHPSIPRSCKLAGAEYF----------------------------------- 123 (346)
T ss_pred C----------------CEEEECCCCCCCchhHHHHHHHcCCEEe-----------------------------------
Confidence 1 24543 234567665444444331100
Q ss_pred hhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHH
Q 005009 568 LYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILV 647 (719)
Q Consensus 568 ~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr 647 (719)
.+++. +.++. . .+...|++++ .++.|.+. +..-+++|.
T Consensus 124 -----------~~~~l------------------~~l~~-~---------~~~~lIiitg--~s~~G~v~-~~~~L~~i~ 161 (346)
T TIGR03576 124 -----------ESDEL------------------SELKK-I---------DGTSLVVITG--STMDLKVV-SEEDLKRVI 161 (346)
T ss_pred -----------ccCCH------------------HHHhh-C---------cCceEEEEEC--CCCCCccc-CHHHHHHHH
Confidence 01110 11211 1 1234677776 36777765 467799999
Q ss_pred HHHHhcCCcEEEeccccCcccc---CccccccccCCCccee--eehhccCCCccchheeEeCHHHHhhhcCCCC
Q 005009 648 KECQNRKIPVIFDEVFTGFWRL---GVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVGDSK 716 (719)
Q Consensus 648 ~Lc~k~gilLI~DEVqTGfGRt---G~~~a~e~~gv~PDIv--tlgK~LggG~~Plsavl~~~~i~~~~~~~~~ 716 (719)
++|++||+++|+||++. .|-. |..- ..+++ +|++ +++|+|+|. =+|.+++++++++.+..-..
T Consensus 162 ~la~~~~~~livDEAy~-~~~~~~~~~~~-~~~~~--~divv~s~SKalaG~--r~G~v~~~~~li~~l~~~~~ 229 (346)
T TIGR03576 162 KQAKSKEAIVLVDDASG-ARVRRLYGQPP-ALDLG--ADLVVTSTDKLMDGP--RGGLLAGRKELVDKIKSVGE 229 (346)
T ss_pred HHHHHcCCEEEEECCcc-ccccccCCCCC-HHHcC--CcEEEeccchhcccc--ceEEEEeCHHHHHHHHHhhc
Confidence 99999999999999995 3332 3221 12333 5765 799999653 25669999999998865443
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.3e-08 Score=113.08 Aligned_cols=211 Identities=11% Similarity=0.024 Sum_probs=133.1
Q ss_pred cCCCCCCCHHHHHHHHHhhhhcccc-----cCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHh
Q 005009 411 QGPDATLQIELARDMGYTAARFGHV-----MFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKF 485 (719)
Q Consensus 411 ~~lGH~~hP~V~~Av~~q~~~~~~~-----~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~ 485 (719)
.-+|.- .+++++|+.+........ .......+...++.++++++++ .+.++|+++|++|+..|++...
T Consensus 27 ~~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g---~~~~~~~~g~t~a~~~al~~l~--- 99 (387)
T PRK09331 27 QRGGIL-TPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLG---MDEARVTHGAREGKFAVMHSLC--- 99 (387)
T ss_pred hcCCCC-CHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHhC---CCcEEEeCCHHHHHHHHHHHhc---
Confidence 357888 999999999887543321 1111224567899999999988 3678899999999999988762
Q ss_pred hccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCc
Q 005009 486 SFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP 565 (719)
Q Consensus 486 ~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P 565 (719)
.+| .+|++-.. .|-+...++...|.. ...++.+
T Consensus 100 --~~g----------------d~Vlv~~~-~h~s~~~~~~~~G~~----------------------------~~~v~~~ 132 (387)
T PRK09331 100 --KKG----------------DYVVLDGL-AHYTSYVAAERAGLN----------------------------VREVPKT 132 (387)
T ss_pred --CCC----------------CEEEECCC-chHHHHHHHHHcCCE----------------------------EEEEeCc
Confidence 111 25665544 444443333322210 0011110
Q ss_pred --chhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHH
Q 005009 566 --EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQ 643 (719)
Q Consensus 566 --~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl 643 (719)
..+ ..| .+.+++.+.+.. .....++.+|+++-. .+..|...+ +
T Consensus 133 ~~~~~-----------~~d------------------~~~l~~~l~~~~-~~~~~~~~lV~l~~~-~~~tG~~~~----l 177 (387)
T PRK09331 133 GYPEY-----------KIT------------------PEAYAEKIEEVK-EETGKPPALALLTHV-DGNYGNLAD----A 177 (387)
T ss_pred cCcCC-----------CcC------------------HHHHHHHHHHhh-hccCCCCEEEEEECC-CCCCccccc----H
Confidence 000 011 245555554210 011246778888876 788888877 9
Q ss_pred HHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhcCC
Q 005009 644 RILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD 714 (719)
Q Consensus 644 ~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~~ 714 (719)
++|.++|++||+++|+||+|. +|..+ +....+|+.-.+.++.|.++++ .++|.+++++++++.+...
T Consensus 178 ~~I~~la~~~g~~livD~a~~-~g~~~--~~~~~~g~D~~~~s~~K~l~~~-~~~G~l~~~~~~i~~~~~~ 244 (387)
T PRK09331 178 KKVAKVAHEYGIPFLLNGAYT-VGRMP--VDGKKLGADFIVGSGHKSMAAS-APSGVLATTEEYADKVFRT 244 (387)
T ss_pred HHHHHHHHHcCCEEEEECCcc-cCCcC--CCHHHcCCCEEEeeCcccccCC-CCEEEEEECHHHHhhcccc
Confidence 999999999999999999995 44322 2222345433344789999877 5889999999988876443
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.3e-09 Score=112.24 Aligned_cols=94 Identities=14% Similarity=0.148 Sum_probs=73.3
Q ss_pred CCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccc----ccccCCCcceeeehhccC
Q 005009 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT----ADLLGCVPDIACYGKLLT 692 (719)
Q Consensus 617 ~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a----~e~~gv~PDIvtlgK~Lg 692 (719)
..++.+|++++. +...|.+. |.+.+++|.++|+++|+++|+||++++++..|.... ....+....+-+++|.++
T Consensus 130 ~~~~~~v~i~~~-~~~tG~~~-~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~ 207 (350)
T cd00609 130 TPKTKLLYLNNP-NNPTGAVL-SEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFG 207 (350)
T ss_pred CccceEEEEECC-CCCCCccc-CHHHHHHHHHHHHhCCeEEEEecchhhceeCCcccccccCcCccCcEEEEeecccccC
Confidence 357899999996 88889855 688999999999999999999999998877666532 222222222337999999
Q ss_pred -CCccchheeEeCH-HHHhhhcC
Q 005009 693 -GGVIPLAATLATN-AVFDSFVG 713 (719)
Q Consensus 693 -gG~~Plsavl~~~-~i~~~~~~ 713 (719)
+| .++|++++++ ++.+.+..
T Consensus 208 ~~g-~~~G~i~~~~~~~~~~~~~ 229 (350)
T cd00609 208 LPG-LRIGYLIAPPEELLERLKK 229 (350)
T ss_pred Ccc-cceEEEecCHHHHHHHHHH
Confidence 77 7899999999 78887653
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.8e-08 Score=109.95 Aligned_cols=246 Identities=13% Similarity=0.081 Sum_probs=158.9
Q ss_pred CCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCC-CHHHHHHHHHhhhhcccccC----CCCCChHH
Q 005009 371 VPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATL-QIELARDMGYTAARFGHVMF----PENVYEPA 445 (719)
Q Consensus 371 ~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~-hP~V~~Av~~q~~~~~~~~~----~~~~~~~~ 445 (719)
+|.....++++-.-.+.|-+...|+ ..+.|.+.| -++||.++ +-.-++++.+.++++++... -...++.+
T Consensus 110 VPG~~v~l~dR~S~D~n~tfk~tG~--~~~~lNlgS---YNYLGFa~~~g~ca~~~~~~~~kygl~~css~~e~G~~~~h 184 (519)
T KOG1357|consen 110 VPGAWVDLMDRVSDDYNWTFKYTGT--RSRCLNLGS---YNYLGFAQSVGPCAEASLKSFDKYGLSRCSSRHEAGTTEEH 184 (519)
T ss_pred CCCceEEeeeeeccCCCceEEeccc--eeeeeeecc---cccccccccCCcCChHHHHHHHHhcccccccchhcccHHHH
Confidence 4444556777766666666666676 113445443 23343320 33344455555566655431 12457889
Q ss_pred HHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCcccccc
Q 005009 446 LECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAME 525 (719)
Q Consensus 446 ~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~gals 525 (719)
.++++..+++.+. +.++-+..|.-+|..-+-.. ..+...|.-+.-.|++......
T Consensus 185 kelE~l~A~f~g~---e~a~vF~mGf~TNs~~~p~l----------------------~~~gsLIiSDelNHaSi~~GaR 239 (519)
T KOG1357|consen 185 KELEELVARFLGV---EDAIVFSMGFATNSMNIPSL----------------------LGKGSLIISDELNHASLITGAR 239 (519)
T ss_pred HHHHHHHHHhcCC---cceEEEeccccccccCccee----------------------ecCCcceeeccccchheecccc
Confidence 9999999999885 45566666755554433332 2345667778888998888777
Q ss_pred ccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHH
Q 005009 526 AQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYIS 605 (719)
Q Consensus 526 lt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le 605 (719)
++|.... + ..|||+. ++ ..-|+
T Consensus 240 LSgAtiR-----------------------------V---------------fkHNdm~----------~L----Er~Lr 261 (519)
T KOG1357|consen 240 LSGATTR-----------------------------V---------------FRHNDMQ----------GL----ERLLR 261 (519)
T ss_pred ccCceEE-----------------------------E---------------EecCCHH----------HH----HHHHH
Confidence 7763210 0 1256641 11 12333
Q ss_pred HHHhcCCCCC-CCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccC--ccccCccccccccCCCc
Q 005009 606 QNLLQNPGLK-VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG--FWRLGVETTADLLGCVP 682 (719)
Q Consensus 606 ~~l~~~~~~~-~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTG--fGRtG~~~a~e~~gv~P 682 (719)
++|..-+... .+.+.--||+|.| .++.|.++- |+++.++|+|+.+.|++||.+++ .|+||. ..++++|+.|
T Consensus 262 d~I~~gqP~Thrp~kki~iivegi-ysmEg~iv~----Lp~vvalkkkykayl~lDEAHSiGA~g~tGr-gvce~~g~d~ 335 (519)
T KOG1357|consen 262 DAIVYGQPKTHRPWKKILICVEGI-YSMEGTIVD----LPEVVALKKKYKAYLYLDEAHSIGAMGATGR-GVCEYFGVDP 335 (519)
T ss_pred HHHhcCCCCcCCcchheeeeeccc-eeccCeecc----cHHHHHhhccccEEEEeeccccccccCCCCc-ceeeccCCCc
Confidence 4443322222 2567789999998 999999998 89999999999999999999983 567774 6788899865
Q ss_pred ---cee--eehhccC--CCccchheeEeCHHHHhhhcCCC
Q 005009 683 ---DIA--CYGKLLT--GGVIPLAATLATNAVFDSFVGDS 715 (719)
Q Consensus 683 ---DIv--tlgK~Lg--gG~~Plsavl~~~~i~~~~~~~~ 715 (719)
||+ |+-|..| ||| +.+++++.+.+.-.+
T Consensus 336 ~dvDImMGtftKSfga~GGy-----iagsk~lid~lrt~s 370 (519)
T KOG1357|consen 336 EDVDIMMGTFTKSFGAAGGY-----IAGSKELIDYLRTPS 370 (519)
T ss_pred hhheeecceehhhcccccce-----ecCcHHHHhhhccCC
Confidence 666 8999987 466 899999999876543
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.6e-08 Score=108.08 Aligned_cols=217 Identities=13% Similarity=0.036 Sum_probs=127.7
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlK 479 (719)
+++|+.++.+. .. +|.+.+|+++. +..... .+..+...+|.+.|+++.+. +.+++++||++++..++.
T Consensus 6 ~~~~~~~~~~~----~~-~~~~~~a~~~~--~~~~~~--~~~~~~~~~l~~~la~~~~~---~~~~~~~~Gs~a~~~~l~ 73 (353)
T PLN02721 6 RVVDLRSDTVT----KP-TDAMRAAMANA--EVDDDV--LGYDPTALRLEEEMAKIFGK---EAALFVPSGTMGNLISVL 73 (353)
T ss_pred hhhhhhccccc----CC-CHHHHHHHHhc--cCCCcc--cCCCHHHHHHHHHHHHHhCC---ceeEEecCccHHHHHHHH
Confidence 67888887665 36 89999999764 111111 12356678999999999873 568899999999988877
Q ss_pred HHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCcc-c-cccccCCCCCCCCCCCCCccCCCcccCCCcccccC
Q 005009 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTL-G-AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (719)
Q Consensus 480 lA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~-g-alslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (719)
... ...| ..|+..+.+|.+... + .....|
T Consensus 74 ~~~----~~~g----------------d~Vl~~~~~~~~~~~~~~~~~~~g----------------------------- 104 (353)
T PLN02721 74 VHC----DVRG----------------SEVILGDNSHIHLYENGGISTLGG----------------------------- 104 (353)
T ss_pred HHc----cCCC----------------CeEEEcCccceehhcccchhhhcC-----------------------------
Confidence 651 1111 357776666422111 0 001000
Q ss_pred cceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCcccc
Q 005009 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (719)
Q Consensus 558 ~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~ 637 (719)
...+.+|..- .+. -| .+.+++.+.+.. ..+..+..+|++++. +...|-..
T Consensus 105 -~~~~~v~~~~----------~~~---------~d--------~~~l~~~i~~~~-~~~~~~~~~v~l~~~-~~np~G~~ 154 (353)
T PLN02721 105 -VHPRTVKNNE----------DGT---------MD--------LDAIEAAIRPKG-DDHFPTTRLICLENT-HANCGGRC 154 (353)
T ss_pred -ceeEecCCCc----------CCC---------cC--------HHHHHHHHHhcc-CCCCCcceEEEEecc-ccccCCcc
Confidence 0011111000 000 00 245666665310 012246789999997 77655556
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc-ccccccCCCcc--eeeehhccCCCccchhe-eEeCHHHHhhh
Q 005009 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPD--IACYGKLLTGGVIPLAA-TLATNAVFDSF 711 (719)
Q Consensus 638 pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~-~a~e~~gv~PD--IvtlgK~LggG~~Plsa-vl~~~~i~~~~ 711 (719)
.+.+.+++|.++|++||+++|+||++. ++-.... ..........| +++++|++++ |+|+ +++++++++.+
T Consensus 155 ~~~~~l~~l~~l~~~~g~~livD~a~~-~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~---~~G~~~~~~~~~~~~~ 228 (353)
T PLN02721 155 LSVEYTDKVGELAKRHGLKLHIDGARI-FNASVALGVPVHRLVKAADSVSVCLSKGLGA---PVGSVIVGSKSFIRKA 228 (353)
T ss_pred ccHHHHHHHHHHHHHcCCEEEEEchhh-hcchhhhCCCHHHHhhhCCEEEEecccccCC---ceeeEEecCHHHHHhH
Confidence 689999999999999999999999985 3321100 00000011234 4589999974 4565 56788877653
|
|
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.9e-08 Score=96.30 Aligned_cols=79 Identities=15% Similarity=0.164 Sum_probs=61.6
Q ss_pred CCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeeh--hccCCC
Q 005009 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGG 694 (719)
Q Consensus 617 ~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~LggG 694 (719)
..+++++++++. +...|...+ .++|.++|+++|+++|+||++.++.+...++ ......+|+++.| |.+++
T Consensus 90 ~~~~~~v~~~~~-~~~~g~~~~----~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~--~~~~~~~d~~~~s~~K~~~~- 161 (170)
T cd01494 90 KPNVALIVITPN-TTSGGVLVP----LKEIRKIAKEYGILLLVDAASAGGASPAPGV--LIPEGGADVVTFSLHKNLGG- 161 (170)
T ss_pred cCceEEEEEecC-cCCCCeEcC----HHHHHHHHHHcCCEEEEeccccccccccccc--ccccccCCEEEEEcccccCC-
Confidence 468899999997 888887776 4999999999999999999999876654332 2223468999888 99987
Q ss_pred ccchheeEeC
Q 005009 695 VIPLAATLAT 704 (719)
Q Consensus 695 ~~Plsavl~~ 704 (719)
...|.++++
T Consensus 162 -~~~G~l~~~ 170 (170)
T cd01494 162 -EGGGVVIVK 170 (170)
T ss_pred -CceEEEEeC
Confidence 356666653
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.5e-08 Score=109.68 Aligned_cols=99 Identities=18% Similarity=0.177 Sum_probs=75.8
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCC
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~ 681 (719)
+.+++.+.+ .+.+ +.++..| +.-.|.+.+ .++++++|+.++++||+||++++|++.|.....+..+..
T Consensus 150 ~~l~~~~~~-----~~~~-~i~l~~p--~NPtG~~~~----~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~ 217 (368)
T PRK03317 150 DAAVAAIAE-----HRPD-VVFLTSP--NNPTGTALP----LDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLLPEY 217 (368)
T ss_pred HHHHHHHhc-----cCCC-EEEEeCC--CCCCCCCCC----HHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHHHhC
Confidence 456666642 1222 2344555 677788887 788888898889999999999999887766555666667
Q ss_pred ccee---eehhccC-CCccchheeEeCHHHHhhhcC
Q 005009 682 PDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 682 PDIv---tlgK~Lg-gG~~Plsavl~~~~i~~~~~~ 713 (719)
|+++ +|||++| .| +++|++++++++++.+..
T Consensus 218 ~~~i~~~SfSK~~g~~G-lRiG~~~~~~~~~~~l~~ 252 (368)
T PRK03317 218 PRLVVSRTMSKAFAFAG-GRLGYLAAAPAVVDALRL 252 (368)
T ss_pred CCEEEEEechhhhccch-hhhhhhhCCHHHHHHHHh
Confidence 8887 8999998 68 799999999999988764
|
|
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.8e-08 Score=109.68 Aligned_cols=87 Identities=15% Similarity=0.137 Sum_probs=65.2
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee--eehhccCCCcc
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVI 696 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlgK~LggG~~ 696 (719)
+...|+++-. .+..|...+ +++|.++|++||+++|+||+|. +|..+.-. ....+|++ +++|++++| .
T Consensus 146 ~~~lv~~~~p-~~~~G~~~~----l~~i~~la~~~~~~livDea~~-~g~~~~~~----~~~~~di~v~s~sK~~~~~-g 214 (370)
T TIGR02539 146 PPVLALLTHV-DGEYGNLPD----AGKVAKVCREKGVPLLLNCAYT-VGRMPVSA----KEIGADFIVGSGHKSMAAS-G 214 (370)
T ss_pred CcEEEEEECC-CCCCccccC----HHHHHHHHHHcCCeEEEECccc-cCCcCCCH----HHcCCCEEEeeCcccccCC-C
Confidence 4556776654 677788877 8999999999999999999996 54323211 12246865 799999876 5
Q ss_pred chheeEeCHHHHhhhcCCCC
Q 005009 697 PLAATLATNAVFDSFVGDSK 716 (719)
Q Consensus 697 Plsavl~~~~i~~~~~~~~~ 716 (719)
|+|.+++++++.+.+.....
T Consensus 215 ~~G~l~~~~~~i~~l~~~~~ 234 (370)
T TIGR02539 215 PCGVLGMSEEWEDIVLRKSR 234 (370)
T ss_pred CEEEEEECHHHHhhhccccc
Confidence 89999999999998765443
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.9e-08 Score=106.20 Aligned_cols=206 Identities=14% Similarity=0.009 Sum_probs=118.7
Q ss_pred CCCCCHHHHHHHHHhhhhcccccC-CCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhcccccc
Q 005009 414 DATLQIELARDMGYTAARFGHVMF-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVL 492 (719)
Q Consensus 414 GH~~hP~V~~Av~~q~~~~~~~~~-~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~ 492 (719)
-|. ||++++++.+++........ .....+...++.+.|+++.+.+ -..++|+++|+||++.|++.+ +....+
T Consensus 30 ~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~~~~~~ggt~a~~~a~~~~-~~~~~~---- 102 (371)
T PRK13520 30 TEP-HPIARKAHEMFLETNLGDPGLFPGTAKLEEEAVEMLGELLHLP-DAYGYITSGGTEANIQAVRAA-RNLAKA---- 102 (371)
T ss_pred cCc-hHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCC-CCCeEEecCcHHHHHHHHHHH-HhhccC----
Confidence 567 99999999998875322111 0112333468888898887743 235788999999999999988 432111
Q ss_pred ccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcc
Q 005009 493 VDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKI 572 (719)
Q Consensus 493 ~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~ 572 (719)
++.+||..+.++... .......|. ....++.+...
T Consensus 103 ------------~~~~vl~~~~~h~s~-~~~~~~~g~----------------------------~~~~v~~~~~~---- 137 (371)
T PRK13520 103 ------------EKPNIVVPESAHFSF-DKAADMLGV----------------------------ELRRAPLDDDY---- 137 (371)
T ss_pred ------------CCceEEecCcchHHH-HHHHHHcCc----------------------------eEEEecCCCCC----
Confidence 124677777654321 111111110 00112211100
Q ss_pred cccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHh
Q 005009 573 VEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN 652 (719)
Q Consensus 573 ~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k 652 (719)
..| .+.+++.+.+ .....+++.+ ....|.+.+ +++|.++|++
T Consensus 138 -------~~d------------------~~~l~~~i~~-------~~~~vi~~~~--~~~tG~~~~----l~~I~~l~~~ 179 (371)
T PRK13520 138 -------RVD------------------VKAVEDLIDD-------NTIGIVGIAG--TTELGQVDP----IPELSKIALE 179 (371)
T ss_pred -------cCC------------------HHHHHHHHhh-------CCEEEEEEcC--CcCCcccCC----HHHHHHHHHH
Confidence 001 3567777752 2223333444 245688877 9999999999
Q ss_pred cCCcEEEeccccCcc----ccCccccccccCCCcceeee--hhccCCCccchheeEeC-HHHHhhhc
Q 005009 653 RKIPVIFDEVFTGFW----RLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLAT-NAVFDSFV 712 (719)
Q Consensus 653 ~gilLI~DEVqTGfG----RtG~~~a~e~~gv~PDIvtl--gK~LggG~~Plsavl~~-~~i~~~~~ 712 (719)
||+++|+||+|+|+. +.+..|..... ..|.+++ -|.+.+| .|+|+++++ +++.+.+.
T Consensus 180 ~g~~livD~a~~~~~~~~~~~~~~~~~~~~--~vd~~~~s~~K~~~a~-~~~G~~~~~~~~~~~~l~ 243 (371)
T PRK13520 180 NGIFLHVDAAFGGFVIPFLDDPPNFDFSLP--GVDSITIDPHKMGLAP-IPAGGILFRDESYLDALA 243 (371)
T ss_pred cCCCEEEEecchhHHHHhhcCCCCccccCC--CCceEEECCccccCcc-CCceEEEEcCHHHHHhhc
Confidence 999999999998652 22222333222 3465553 3544445 688888864 45766653
|
|
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.3e-08 Score=108.81 Aligned_cols=172 Identities=16% Similarity=0.131 Sum_probs=109.7
Q ss_pred CCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCccc
Q 005009 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (719)
Q Consensus 439 ~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG 518 (719)
.+.++...+|+++|+++.+. +.+++++||++|+.++++... +.| .+||. ...+||
T Consensus 50 r~~~p~~~~le~~la~l~g~---~~~~~~~sG~~Ai~~al~al~-----~~G----------------d~Vl~-~~~~~~ 104 (380)
T TIGR01325 50 RYANPTVAAFEERIAALEGA---ERAVATATGMSAIQAALMTLL-----QAG----------------DHVVA-SRSLFG 104 (380)
T ss_pred cCCCchHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHHh-----CCC----------------CEEEE-ecCCcc
Confidence 34567788999999998873 578899999999999997551 111 24555 455677
Q ss_pred CccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHH
Q 005009 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (719)
Q Consensus 519 ~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~ 598 (719)
.+...+.-.- ...+. . ...++ .+|
T Consensus 105 ~t~~~~~~~~-------------~~~g~-----~------v~~v~----------------~~d---------------- 128 (380)
T TIGR01325 105 STVGFISEIL-------------PRFGI-----E------VSFVD----------------PTD---------------- 128 (380)
T ss_pred hHHHHHHHHH-------------HHhCC-----E------EEEEC----------------CCC----------------
Confidence 6544322100 00000 0 00011 011
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccccccc
Q 005009 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (719)
Q Consensus 599 ~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~ 678 (719)
.+.+++.+. .++.+|++|.. ....|...+ +++|.++|+++|+++|+||+++.+ -. ..-.
T Consensus 129 --~~~l~~~i~--------~~tklV~le~p-~np~g~~~d----l~~I~~la~~~gi~livD~a~~~~-~~-----~~pl 187 (380)
T TIGR01325 129 --LNAWEAAVK--------PNTKLVFVETP-SNPLGELVD----IAALAELAHAIGALLVVDNVFATP-VL-----QQPL 187 (380)
T ss_pred --HHHHHHhcC--------CCceEEEEECC-CCCCCeeeC----HHHHHHHHHHcCCEEEEECCCccc-cc-----CCch
Confidence 134555543 25679999986 676777766 899999999999999999998632 11 1122
Q ss_pred CCCcceee--ehhccCC-CccchheeEeCHHHHhhhc
Q 005009 679 GCVPDIAC--YGKLLTG-GVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 679 gv~PDIvt--lgK~Lgg-G~~Plsavl~~~~i~~~~~ 712 (719)
...+||++ ++|.++| |....|++++++++++.+.
T Consensus 188 ~~g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~ 224 (380)
T TIGR01325 188 KLGADVVVYSATKHIDGQGRVMGGVIAGSEELMAEVA 224 (380)
T ss_pred hhCCCEEEeeccceecCCCCeEEEEEEeCHHHHHHHH
Confidence 34579986 8999987 5333467778888776553
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.1e-07 Score=104.66 Aligned_cols=195 Identities=11% Similarity=0.004 Sum_probs=111.9
Q ss_pred CHHHHHHHHHhh-hhcccccCCC---CCChHHHHHHH----HHHhccCCCCCCeE-EEeCChHHHHHHHHHHHHHHhhcc
Q 005009 418 QIELARDMGYTA-ARFGHVMFPE---NVYEPALECAE----LLLQGVGKGWASRA-YFSDNGSTAIEIALKMAFRKFSFD 488 (719)
Q Consensus 418 hP~V~~Av~~q~-~~~~~~~~~~---~~~~~~~~Lae----~L~~~~~~~~~~rv-~f~~SGsEA~E~AlKlA~r~~~~~ 488 (719)
||++.+|+...+ .+++.....+ ..++...+|++ +++++.+. +.+ ++++||+.||.+++.... +
T Consensus 41 ~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~l~g~---~~alv~~~SG~~A~~~~l~al~-----~ 112 (416)
T PRK13034 41 SPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQLFGC---DYANVQPHSGSQANGAVYLALL-----K 112 (416)
T ss_pred CHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCC---CceEEecCCcHHHHHHHHHHhc-----C
Confidence 899999999985 7776532111 12577888998 99999874 466 457999999999987661 1
Q ss_pred ccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchh
Q 005009 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWL 568 (719)
Q Consensus 489 ~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~ 568 (719)
+| .+|++-+.+|.|........+. .. .|... .+++.. +..+
T Consensus 113 ~G----------------D~Vl~~~~~~~~~~~~g~~~~~----~~----~~~~~--~~~~~~-------------~~~~ 153 (416)
T PRK13034 113 PG----------------DTILGMSLSHGGHLTHGAKVSL----SG----KWYNA--VQYGVD-------------RLTG 153 (416)
T ss_pred CC----------------CEEEEcCccceeeeecCCccee----cc----ceeee--EEcccc-------------cccC
Confidence 22 3566666654431111111110 00 00000 000000 0000
Q ss_pred hhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE-ccccccCCccccCCHHHHHHHH
Q 005009 569 YSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII-EPVVHAAGGMHMVDPLFQRILV 647 (719)
Q Consensus 569 ~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIv-EPViqg~gG~~~pp~~fl~~Lr 647 (719)
..| .+.+++.+.. .+..+|++ +++ .| +..+ +++|.
T Consensus 154 -----------~~d------------------~~~le~~l~~-------~~~klVi~~~~~-~g---~~~d----l~~l~ 189 (416)
T PRK13034 154 -----------LID------------------YDEVEELAKE-------HKPKLIIAGFSA-YP---RELD----FARFR 189 (416)
T ss_pred -----------CcC------------------HHHHHHHHhh-------cCCeEEEECCCc-cc---cccC----HHHHH
Confidence 111 2456666642 12356677 575 55 3334 88999
Q ss_pred HHHHhcCCcEEEeccccCccccCccccccccCCCccee--eehhccCCCccchheeEeCHHH
Q 005009 648 KECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAV 707 (719)
Q Consensus 648 ~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlgK~LggG~~Plsavl~~~~i 707 (719)
++|++||++||+|+.|+ +|-+|.......++ ..|++ ++.|.|+|+. -|+++++++.
T Consensus 190 ~la~~~g~~livD~Aha-~G~~~~g~~~~~~~-~~Di~~~s~~K~l~g~~--GG~v~~~~~~ 247 (416)
T PRK13034 190 EIADEVGALLMVDMAHI-AGLVAAGEHPNPFP-HAHVVTTTTHKTLRGPR--GGMILTNDEE 247 (416)
T ss_pred HHHHHcCCEEEEeCccc-ccCcccCCCCCCCC-CceEEEEeCcccCCCCC--CeEEEECcHH
Confidence 99999999999999994 66665432111112 37877 5689996541 3456665543
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.8e-07 Score=101.78 Aligned_cols=216 Identities=11% Similarity=0.105 Sum_probs=129.4
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCC-ChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENV-YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIAL 478 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~-~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~Al 478 (719)
.+||+..+. ..+ +. +|++.+|+.+++....... +. .....+|.+.+++.++-. -+.++++++|++|+..++
T Consensus 29 ~~i~l~~~~--~~~-~~-~~~~~~a~~~~~~~~~~~~---y~~~~g~~~lr~~ia~~l~~~-~~~v~~~~g~t~al~~~~ 100 (380)
T PRK06225 29 EMIWMGQNT--NHL-GP-HEEVREAMIRCIEEGEYCK---YPPPEGFPELRELILKDLGLD-DDEALITAGATESLYLVM 100 (380)
T ss_pred CeEEccCCC--CCC-CC-CHHHHHHHHHHHhcCCCCC---CCCCcchHHHHHHHHHhcCCC-CCcEEEeCCHHHHHHHHH
Confidence 677776532 234 44 7999999998887532211 11 122456778888877643 357999999999999998
Q ss_pred HHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCc
Q 005009 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (719)
Q Consensus 479 KlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 558 (719)
+... .. ...|+..+.+|+... ..+...|.
T Consensus 101 ~~~~-----~~----------------gd~vl~~~p~y~~~~-~~~~~~g~----------------------------- 129 (380)
T PRK06225 101 RAFL-----SP----------------GDNAVTPDPGYLIID-NFASRFGA----------------------------- 129 (380)
T ss_pred HHhc-----CC----------------CCEEEEcCCCCcchH-HHHHHhCc-----------------------------
Confidence 8761 11 135787777776421 11111111
Q ss_pred ceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEE-EEEccccccCCcccc
Q 005009 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGA-LIIEPVVHAAGGMHM 637 (719)
Q Consensus 559 ~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAA-vIvEPViqg~gG~~~ 637 (719)
..+++|-. ++. +-+ .-| .+.+++.+. +++.+ +++.| +.-.|...
T Consensus 130 -~~~~v~~~-------------~~~-~~~--~~d--------~~~l~~~~~--------~~~~~v~l~~p--~NptG~~~ 174 (380)
T PRK06225 130 -EVIEVPIY-------------SEE-CNY--KLT--------PELVKENMD--------ENTRLIYLIDP--LNPLGSSY 174 (380)
T ss_pred -eEEeeccc-------------ccc-CCc--cCC--------HHHHHhhcC--------CCceEEEEeCC--CCCCCcCC
Confidence 01111100 000 000 000 234554443 23434 45677 34556655
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccc-cCCCcceeeehhccC-CCccchheeEeCHHHHhhhc
Q 005009 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL-LGCVPDIACYGKLLT-GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 638 pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~-~gv~PDIvtlgK~Lg-gG~~Plsavl~~~~i~~~~~ 712 (719)
+.+.+++|.++|++||+++|+||++..|.. +.....+. .....++.+++|.+| .| +.+|++++++++++.+.
T Consensus 175 -~~~~~~~i~~~a~~~~~~ii~De~y~~~~~-~~~~~~~~~~~~~i~~~s~SK~~g~~G-~RiG~i~~~~~l~~~~~ 248 (380)
T PRK06225 175 -TEEEIKEFAEIARDNDAFLLHDCTYRDFAR-EHTLAAEYAPEHTVTSYSFSKIFGMAG-LRIGAVVATPDLIEVVK 248 (380)
T ss_pred -CHHHHHHHHHHHHHCCcEEEEehhHHHHhc-cCCchhhcCCCCEEEEeechhhcCCcc-ceeEEEecCHHHHHHHH
Confidence 688899999999999999999999987632 22211111 011234668999998 68 79999999999988764
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.4e-07 Score=104.16 Aligned_cols=171 Identities=13% Similarity=0.047 Sum_probs=112.6
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
+.++...+|+++|+++.+. +.+++++||++|+..+++... +. ..+||+....||+.
T Consensus 37 ~~~p~~~~le~~la~l~g~---~~a~~~~sG~~Ai~~~l~~l~-----~~----------------gd~Vl~~~~~y~~~ 92 (369)
T cd00614 37 IGNPTVDALEKKLAALEGG---EAALAFSSGMAAISTVLLALL-----KA----------------GDHVVASDDLYGGT 92 (369)
T ss_pred CCChhHHHHHHHHHHHHCC---CCEEEEcCHHHHHHHHHHHHc-----CC----------------CCEEEECCCCcchH
Confidence 4577888999999998873 578899999999999998762 11 13677777777663
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
. ..+...- .. .+ .....++ .+|
T Consensus 93 ~-~~~~~~~-~~------------~g-------------~~~~~v~--------------~~d----------------- 114 (369)
T cd00614 93 Y-RLFERLL-PK------------LG-------------IEVTFVD--------------PDD----------------- 114 (369)
T ss_pred H-HHHHHHH-hh------------cC-------------eEEEEeC--------------CCC-----------------
Confidence 2 2111000 00 00 0000000 111
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccC
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~g 679 (719)
.+.+++.+. .++.+|++|.+ ++..|.+.+ +++|.++|++||+++|+||++. .+-. ..-..
T Consensus 115 -~~~l~~~i~--------~~~~~v~~e~~-~np~g~~~d----l~~i~~la~~~g~~livD~t~~-~~~~-----~~~~~ 174 (369)
T cd00614 115 -PEALEAAIK--------PETKLVYVESP-TNPTLKVVD----IEAIAELAHEHGALLVVDNTFA-TPYL-----QRPLE 174 (369)
T ss_pred -HHHHHHhcC--------CCCeEEEEECC-CCCCCeecC----HHHHHHHHHHcCCEEEEECCCc-chhc-----CChhh
Confidence 244555553 25678999987 888888877 9999999999999999999984 2211 11223
Q ss_pred CCccee--eehhccCC-CccchheeEeCH-HHHhhhc
Q 005009 680 CVPDIA--CYGKLLTG-GVIPLAATLATN-AVFDSFV 712 (719)
Q Consensus 680 v~PDIv--tlgK~Lgg-G~~Plsavl~~~-~i~~~~~ 712 (719)
..+|++ +++|.++| |-...|++++++ ++++.+.
T Consensus 175 ~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~ 211 (369)
T cd00614 175 LGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLR 211 (369)
T ss_pred hCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHH
Confidence 357888 78999986 335678888877 7776553
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.5e-07 Score=99.29 Aligned_cols=167 Identities=14% Similarity=0.111 Sum_probs=103.8
Q ss_pred ChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCcc
Q 005009 442 YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTL 521 (719)
Q Consensus 442 ~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~ 521 (719)
.+...++.++|+++++. +.+++++||++|++.+++.. +. .. ..+||....+||+...
T Consensus 17 ~~~~~~~~~~la~~~~~---~~~~~~~sgt~al~~~l~~l-~~---~~----------------gd~vl~~~~~~~~~~~ 73 (352)
T cd00616 17 GPKVREFEKAFAEYLGV---KYAVAVSSGTAALHLALRAL-GI---GP----------------GDEVIVPSFTFVATAN 73 (352)
T ss_pred CHHHHHHHHHHHHHhCC---CeEEEECCHHHHHHHHHHHc-CC---CC----------------CCEEEeCCcchHHHHH
Confidence 46778999999999873 57889999999999999876 11 11 2478888888886432
Q ss_pred ccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcc-hhhhcccccccccccCccchhhcccCchhHHHHH
Q 005009 522 GAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE-WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (719)
Q Consensus 522 galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~-~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~ 600 (719)
. +...|.. ...++.+. .+ ..|
T Consensus 74 ~-~~~~g~~----------------------------~~~~~~~~~~~-----------~~d------------------ 95 (352)
T cd00616 74 A-ILLLGAT----------------------------PVFVDIDPDTY-----------NID------------------ 95 (352)
T ss_pred H-HHHcCCe----------------------------EEEEecCCCcC-----------CcC------------------
Confidence 2 2111100 00111110 00 001
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC
Q 005009 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (719)
Q Consensus 601 ~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv 680 (719)
.+.+++.+. .++.+|++..+ . |...+ +++|+++|+++|+++|+|++|+ +|.. +.....|.
T Consensus 96 ~~~l~~~i~--------~~~~~v~~~~~-~---G~~~~----~~~i~~l~~~~~i~li~D~a~~-~g~~---~~~~~~~~ 155 (352)
T cd00616 96 PELIEAAIT--------PRTKAIIPVHL-Y---GNPAD----MDAIMAIAKRHGLPVIEDAAQA-LGAT---YKGRKVGT 155 (352)
T ss_pred HHHHHHhcC--------cCCeEEEEECC-C---CCcCC----HHHHHHHHHHcCCeEEEECCCC-CCCe---ECCEEccc
Confidence 244555553 24667777664 4 44444 8999999999999999999997 4332 22223344
Q ss_pred Ccceeeeh----hccCCCccchheeEeC-HHHHhhh
Q 005009 681 VPDIACYG----KLLTGGVIPLAATLAT-NAVFDSF 711 (719)
Q Consensus 681 ~PDIvtlg----K~LggG~~Plsavl~~-~~i~~~~ 711 (719)
..|+.+++ |.+++| +.|+++++ +++++.+
T Consensus 156 ~~d~~~~S~~~~K~~~~~--~gg~~~~~~~~~~~~~ 189 (352)
T cd00616 156 FGDAGAFSFHPTKNLTTG--EGGAVVTNDEELAERA 189 (352)
T ss_pred CcceeEEcCCCCCCCccc--CceEEEECCHHHHHHH
Confidence 46888877 999655 35667665 4665543
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.8e-07 Score=105.12 Aligned_cols=163 Identities=12% Similarity=0.062 Sum_probs=108.8
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
+.++...+|+++|+++.+ .+.+++++||++|+..+++... +.| .+||.....|+|.
T Consensus 54 ~~~p~~~~le~~lA~l~g---~~~~v~~~sG~~Ai~~al~~l~-----~~G----------------d~Vl~~~~~y~~t 109 (418)
T TIGR01326 54 LMNPTTDVLEQRIAALEG---GVAALAVASGQAAITYAILNLA-----QAG----------------DNIVSSSYLYGGT 109 (418)
T ss_pred CCChhHHHHHHHHHHHhC---CCeEEEEccHHHHHHHHHHHHh-----CCC----------------CEEEEECCCcHHH
Confidence 456778899999999987 3678999999999999998762 112 3688888888762
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
...+.-.- . .. |.....+| .+|
T Consensus 110 -~~~~~~~~-~------------~~-------------G~~v~~v~--------------~~d----------------- 131 (418)
T TIGR01326 110 -YNLFKHTL-K------------RL-------------GIEVRFVD--------------PDD----------------- 131 (418)
T ss_pred -HHHHHHHH-H------------Hc-------------CcEEEEEC--------------CCC-----------------
Confidence 22211000 0 00 00001111 011
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccC
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~g 679 (719)
.+.+++.+. +++.+|++|.. ..-.|.+.+ +++|.++|++||+++|+||++. .| +......
T Consensus 132 -~~~l~~~l~--------~~t~~V~le~p-~NPtg~v~d----l~~I~~la~~~~i~livD~t~~-~~-----~~~~~l~ 191 (418)
T TIGR01326 132 -PEEFEKAID--------ENTKAVFAETI-GNPAINVPD----IEAIAEVAHAHGVPLIVDNTFA-TP-----YLCRPID 191 (418)
T ss_pred -HHHHHHhcC--------cCCeEEEEECC-CCCCCeecC----HHHHHHHHHHcCCEEEEECCCc-hh-----hcCCchh
Confidence 244565553 24678999986 777777766 8999999999999999999984 22 1222233
Q ss_pred CCccee--eehhccCC-CccchheeEeCH
Q 005009 680 CVPDIA--CYGKLLTG-GVIPLAATLATN 705 (719)
Q Consensus 680 v~PDIv--tlgK~Lgg-G~~Plsavl~~~ 705 (719)
..+|++ +++|.++| | ..+|++++++
T Consensus 192 ~g~Divv~S~sK~l~g~G-~~lGg~v~~~ 219 (418)
T TIGR01326 192 HGADIVVHSATKYIGGHG-TAIGGVIVDG 219 (418)
T ss_pred cCCeEEEECccccccCCc-cceEEEEEec
Confidence 457988 68999998 7 7898888864
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=98.62 E-value=7.2e-07 Score=97.90 Aligned_cols=208 Identities=12% Similarity=0.065 Sum_probs=123.3
Q ss_pred CCCCCCHHHHHHHHHhhhhcccccC-----CCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhc
Q 005009 413 PDATLQIELARDMGYTAARFGHVMF-----PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSF 487 (719)
Q Consensus 413 lGH~~hP~V~~Av~~q~~~~~~~~~-----~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~ 487 (719)
=|+. .|++++++.+....++.... ....++...++.+++++..+ .+.++++++|++|+..++....
T Consensus 10 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g---~~~i~~~~g~t~al~~~l~~~~----- 80 (361)
T cd06452 10 GGRL-TPEARKALIEWGDGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFLG---MDEARVTPGAREGKFAVMHSLC----- 80 (361)
T ss_pred CCCC-CHHHHHHHHHHhcccCCccccccccccccCchHHHHHHHHHHHcC---CceEEEeCCHHHHHHHHHHHhc-----
Confidence 4677 88888888877644333211 11124668899999999987 4789999999999999887651
Q ss_pred cccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcch
Q 005009 488 DHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEW 567 (719)
Q Consensus 488 ~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~ 567 (719)
.+| .+|+....+|.+ ...++...|.. ...++...
T Consensus 81 ~~g----------------d~Vl~~~~~~~~-~~~~~~~~g~~----------------------------~~~v~~~~- 114 (361)
T cd06452 81 EKG----------------DWVVVDGLAHYT-SYVAAERAGLN----------------------------VREVPNTG- 114 (361)
T ss_pred CCC----------------CEEEEcCCcchH-HHHHHHhcCCE----------------------------EEEEecCC-
Confidence 111 245555444443 22221111100 00111100
Q ss_pred hhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHH
Q 005009 568 LYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILV 647 (719)
Q Consensus 568 ~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr 647 (719)
+..+ .-| .+.+++.+.+... ....++.+|++.-. .+..|...+ +++|.
T Consensus 115 ----------------~~~~--~~d--------~~~l~~~l~~~~~-~~~~~~~lv~l~~p-~n~tG~~~~----~~~i~ 162 (361)
T cd06452 115 ----------------HPEY--HIT--------PEGYAEVIEEVKD-EFGKPPALALLTHV-DGNYGNLHD----AKKIA 162 (361)
T ss_pred ----------------CCCc--ccC--------HHHHHHHHHHHhh-ccCCCceEEEEECC-CCCCeeecc----HHHHH
Confidence 0000 000 2445555542100 00124566666654 566676655 89999
Q ss_pred HHHHhcCCcEEEeccccCccccCccccccccCCCccee--eehhccCCCccchheeEeCHHHHhhhcC
Q 005009 648 KECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 648 ~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
++|+++|+++|+||++. +|... +....+|. |++ ++.|.++++ .++|.+++++++.+.+..
T Consensus 163 ~~~~~~~~~vivD~a~~-~g~~~--~~~~~~~~--d~~~~s~~K~l~~~-~~~G~l~~~~~~~~~l~~ 224 (361)
T cd06452 163 KVCHEYGVPLLLNGAYT-VGRMP--VSGKELGA--DFIVGSGHKSMAAS-APIGVLATTEEWADIVFR 224 (361)
T ss_pred HHHHHcCCeEEEECCcc-cCCcC--CCHHHcCC--CEEEecCCccccCC-CCeEEEEECHHHHHHHhc
Confidence 99999999999999995 43221 33333443 655 678999876 589999999999888744
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=98.60 E-value=9.3e-07 Score=95.38 Aligned_cols=209 Identities=13% Similarity=0.021 Sum_probs=121.2
Q ss_pred eccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHH
Q 005009 403 DACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF 482 (719)
Q Consensus 403 D~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~ 482 (719)
||+| .+++| . +|++.+|+.+.+.... . ....+...++.+.+++..+. +.++++++|++|+..+++..+
T Consensus 1 ~~~~---~~~~~-~-~~~v~~a~~~~~~~~~--~--~~~~~~~~~l~~~~a~~~g~---~~~~~~~~gt~a~~~~~~~l~ 68 (338)
T cd06502 1 DFRS---DTVTG-P-TPEMLEAMAAANVGDD--V--YGEDPTTAKLEARAAELFGK---EAALFVPSGTAANQLALAAHT 68 (338)
T ss_pred Cccc---ccCCC-C-CHHHHHHHHhcccCCc--c--cCCCHHHHHHHHHHHHHhCC---CeEEEecCchHHHHHHHHHhc
Confidence 4554 55677 5 8999999987653221 1 12345678899999998872 578899999999998887651
Q ss_pred HHhhccccccccccCCCccccCcceEEEEEeCCcccCcccccc---ccCCCCCCCCCCCCCccCCCcccCCCcccccCcc
Q 005009 483 RKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAME---AQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (719)
Q Consensus 483 r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~gals---lt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (719)
..| ..|+ ....+|.....+.. +.|.. .
T Consensus 69 -----~~g----------------d~v~-~~~~~~~~~~~~~~~~~~~g~~----------------------------~ 98 (338)
T cd06502 69 -----QPG----------------GSVI-CHETAHIYTDEAGAPEFLSGVK----------------------------L 98 (338)
T ss_pred -----CCC----------------CeEE-EecCcceeeecCCcHHHHcCce----------------------------E
Confidence 111 2455 55556654322111 11100 0
Q ss_pred eeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCC
Q 005009 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (719)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (719)
..++... + ..| .+.+++.+.+... .+..+..+|+++.. ...||+. +
T Consensus 99 ~~v~~~~-~-----------~~d------------------~~~l~~~i~~~~~-~~~~~~~~v~l~~p-~n~g~~~--~ 144 (338)
T cd06502 99 LPVPGEN-G-----------KLT------------------PEDLEAAIRPRDD-IHFPPPSLVSLENT-TEGGTVY--P 144 (338)
T ss_pred EeecCCC-C-----------cCC------------------HHHHHHHhhccCC-CcCCcceEEEEEee-cCCcccc--C
Confidence 0111100 0 011 2456666653100 11135677777764 5555544 7
Q ss_pred HHHHHHHHHHHHhcCCcEEEeccccCc--cccCccccccccCCCccee--eehhccCCCccchhe-eEeCHHHHhhhc
Q 005009 640 PLFQRILVKECQNRKIPVIFDEVFTGF--WRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAA-TLATNAVFDSFV 712 (719)
Q Consensus 640 ~~fl~~Lr~Lc~k~gilLI~DEVqTGf--GRtG~~~a~e~~gv~PDIv--tlgK~LggG~~Plsa-vl~~~~i~~~~~ 712 (719)
.+.+++|.++|++||+++|+||.+.-+ +-.|. ....+...+|++ +++|.++. |.++ +++++++.+.+.
T Consensus 145 ~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~--~~~~~~~~~d~~~~s~sK~~~~---~~g~~~~~~~~~~~~~~ 217 (338)
T cd06502 145 LDELKAISALAKENGLPLHLDGARLANAAAALGV--ALKTYKSGVDSVSFCLSKGGGA---PVGAVVVGNRDFIARAR 217 (338)
T ss_pred HHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCC--CHHHHHhcCCEEEEeccccCCC---ccceEEECCHHHHHHHH
Confidence 889999999999999999999987311 11122 112222356766 67888863 3344 457888877653
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.9e-07 Score=99.19 Aligned_cols=208 Identities=13% Similarity=0.051 Sum_probs=125.0
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCC-------ChHHHHHHHHHHhccCCCCCCeEEEeCChHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENV-------YEPALECAELLLQGVGKGWASRAYFSDNGST 472 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~-------~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsE 472 (719)
.|||..+ .+-- ++.+.+++.+.+..... +..... .+...++.++|+++++.+ -+.++|+++|++
T Consensus 5 ~yld~aa------~~~~-~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~-~~~v~~~~g~t~ 75 (402)
T TIGR02006 5 IYLDYAA------TTPV-DPRVAEKMMPYLTEKFG-NPASRSHSFGWEAEEAVENARNQVAELIGAD-SREIVFTSGATE 75 (402)
T ss_pred EEeeCCc------CCCC-CHHHHHHHHHHHHhcCC-CCChhhhHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEeCCHHH
Confidence 6888654 3455 89999999887754321 111111 133455667788887743 357999999999
Q ss_pred HHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCc
Q 005009 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (719)
Q Consensus 473 A~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (719)
|++.+++.+ ..+...+ ..+||... ..|.+...+...... .+.
T Consensus 76 a~~~~l~~l-~~~~~~~----------------g~~Vi~~~-~~h~s~~~~~~~~~~---~g~----------------- 117 (402)
T TIGR02006 76 SNNLAIKGI-AHFYKSK----------------GNHIITSK-TEHKAVLDTCRYLER---EGF----------------- 117 (402)
T ss_pred HHHHHHHHH-HHhhcCC----------------CCEEEECC-CccHHHHHHHHHHHh---cCC-----------------
Confidence 999999877 3221111 12455544 456544433221100 000
Q ss_pred ccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 005009 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (719)
Q Consensus 553 ~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~ 632 (719)
....++..... .-| .+.+++.+. ++..+|++..+ +..
T Consensus 118 -----~v~~v~~~~~~---------------------~~d--------~~~l~~~l~--------~~~~lv~v~~~-~n~ 154 (402)
T TIGR02006 118 -----EVTYLPPKSNG---------------------LID--------LEELKAAIR--------DDTILVSIMHV-NNE 154 (402)
T ss_pred -----EEEEEccCCCC---------------------cCC--------HHHHHHhcC--------CCCEEEEEECC-CcC
Confidence 00111111000 000 244555553 23567888886 888
Q ss_pred CccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeeh--hccCCCccchheeEeCHHHH
Q 005009 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVF 708 (719)
Q Consensus 633 gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~LggG~~Plsavl~~~~i~ 708 (719)
.|...+ +++|.++|++||+++|+|++|+ +|-.. ++..+..+|+++++ |.+|. ..+|+++++++..
T Consensus 155 tG~~~~----~~~I~~l~~~~g~~livD~a~a-~g~~~----~~~~~~~~D~~~~s~~K~~gp--~G~G~l~~~~~~~ 221 (402)
T TIGR02006 155 IGVIQD----IAAIGEICRERKVFFHVDAAQS-VGKIP----INVNELKVDLMSISGHKIYGP--KGIGALYVRRKPR 221 (402)
T ss_pred ceeccc----HHHHHHHHHHcCCEEEEEcchh-cCCcc----cCccccCCCEEEEehhhhcCC--CceEEEEEccCCC
Confidence 999887 8999999999999999999995 43321 22234578999999 96542 2378888887544
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=98.56 E-value=1e-06 Score=97.25 Aligned_cols=205 Identities=14% Similarity=0.042 Sum_probs=122.1
Q ss_pred eeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCC------ChHHHHHHHHHHhccCCCCCCeEEEeCChHHHH
Q 005009 401 QFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENV------YEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (719)
Q Consensus 401 yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~------~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~ 474 (719)
|||..+ .+-- ++.|.+|+.+.+.... .+..... .+...++.++++++++.. .+.++|+++|++|+
T Consensus 2 yld~aa------~~~~-~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~-~~~i~~t~~~t~a~ 72 (379)
T TIGR03402 2 YLDNNA------TTRV-DPEVLEAMLPYFTEYF-GNPSSMHSFGGEVGKAVEEAREQVAKLLGAE-PDEIIFTSGGTESD 72 (379)
T ss_pred cCCCcC------CCCC-CHHHHHHHHHHHHhcC-CCCCcccHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEeCcHHHHH
Confidence 667443 4556 8999999998876431 1111111 233556667888888753 36799999999999
Q ss_pred HHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCccc
Q 005009 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (719)
Q Consensus 475 E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~ 554 (719)
..|++.+. ... +++..||.....|++. ......... .+ .
T Consensus 73 ~~al~~~~-~~~-----------------~~~~~vv~~~~~~~s~-~~~~~~~~~---~G-----------~-------- 111 (379)
T TIGR03402 73 NTAIKSAL-AAQ-----------------PEKRHIITTAVEHPAV-LSLCQHLEK---QG-----------Y-------- 111 (379)
T ss_pred HHHHHHHH-Hhc-----------------CCCCeEEEcccccHHH-HHHHHHHHH---cC-----------C--------
Confidence 99999872 211 1123566666666542 111111000 00 0
Q ss_pred ccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCc
Q 005009 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (719)
Q Consensus 555 ~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG 634 (719)
....++.++.. .-+ .+.+++.+. +++..+++.-+ +...|
T Consensus 112 ---~v~~v~~~~~g---------------------~~~--------~~~l~~~i~--------~~~~lv~i~~~-~n~tG 150 (379)
T TIGR03402 112 ---KVTYLPVDEEG---------------------RLD--------LEELRAAIT--------DDTALVSVMWA-NNETG 150 (379)
T ss_pred ---EEEEEccCCCC---------------------cCC--------HHHHHHhcC--------CCcEEEEEEcc-cCCee
Confidence 00111111000 000 245666554 24566777765 78889
Q ss_pred cccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeeh--hccCCCccchheeEeCHHH
Q 005009 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAV 707 (719)
Q Consensus 635 ~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~LggG~~Plsavl~~~~i 707 (719)
.+.+ +++|.++|++||+++|+|++|+ +|.. -.+......|+++++ | +.|. ..+|++.++++.
T Consensus 151 ~~~~----~~~I~~l~~~~g~~vivD~~~~-~g~~----~~~~~~~~~D~~~~s~~K-~~gp-~G~g~l~v~~~~ 214 (379)
T TIGR03402 151 TIFP----IEEIGEIAKERGALFHTDAVQA-VGKI----PIDLKEMNIDMLSLSGHK-LHGP-KGVGALYIRKGT 214 (379)
T ss_pred eccc----HHHHHHHHHHcCCEEEEECccc-cccc----ccCcccCCCCEEEEcHHH-cCCC-CceEEEEECCCC
Confidence 9888 7899999999999999999996 4421 122223468999999 9 6553 346777777653
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.2e-06 Score=93.34 Aligned_cols=206 Identities=12% Similarity=0.119 Sum_probs=122.9
Q ss_pred CHHHHHHHHHhhhhccc-ccCCCCCChHHHHHHHHHHhccCCCC-C-CeEEEeCChHHHHHHHHHHHHHHhhcccccccc
Q 005009 418 QIELARDMGYTAARFGH-VMFPENVYEPALECAELLLQGVGKGW-A-SRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVD 494 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~-~~~~~~~~~~~~~Lae~L~~~~~~~~-~-~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~ 494 (719)
.+.+.+++.+.++.... ........+....+++.+.+..+... . +.++++++|++|++.+++... +.
T Consensus 35 ~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~-----~~----- 104 (378)
T PRK07682 35 PWNVREASIRSLEQGYTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMRAII-----NP----- 104 (378)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhC-----CC-----
Confidence 56778888877654211 11112334556677777765433210 1 379999999999998887651 11
Q ss_pred ccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccc
Q 005009 495 FLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVE 574 (719)
Q Consensus 495 ~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~ 574 (719)
...|+..+.+|++... .....+.. .+++|..
T Consensus 105 -----------gd~vl~~~p~y~~~~~-~~~~~g~~------------------------------~~~~~~~------- 135 (378)
T PRK07682 105 -----------GDEVLIVEPSFVSYAP-LVTLAGGV------------------------------PVPVATT------- 135 (378)
T ss_pred -----------CCEEEEeCCCchhhHH-HHHHcCCE------------------------------EEEeecC-------
Confidence 2478888888885322 11111110 0111100
Q ss_pred cccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE-ccccccCCccccCCHHHHHHHHHHHHhc
Q 005009 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII-EPVVHAAGGMHMVDPLFQRILVKECQNR 653 (719)
Q Consensus 575 ~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIv-EPViqg~gG~~~pp~~fl~~Lr~Lc~k~ 653 (719)
..+ .+ .-| .+.+++.+. +++.++++ -| +.-.|. ..+.+.+++|.++|++|
T Consensus 136 -----~~~---~~--~~d--------~~~l~~~~~--------~~~~~v~~~~p--~NPtG~-~~s~~~~~~l~~~~~~~ 186 (378)
T PRK07682 136 -----LEN---EF--KVQ--------PAQIEAAIT--------AKTKAILLCSP--NNPTGA-VLNKSELEEIAVIVEKH 186 (378)
T ss_pred -----Ccc---CC--CCC--------HHHHHhhcC--------cccEEEEEECC--CCCcCc-CcCHHHHHHHHHHHHHc
Confidence 000 00 000 244555543 23555544 45 555666 44788999999999999
Q ss_pred CCcEEEeccccCccccCccccc-cccCCCcc---eeeehhccC-CCccchheeEeCHHHHhhhc
Q 005009 654 KIPVIFDEVFTGFWRLGVETTA-DLLGCVPD---IACYGKLLT-GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 654 gilLI~DEVqTGfGRtG~~~a~-e~~gv~PD---IvtlgK~Lg-gG~~Plsavl~~~~i~~~~~ 712 (719)
|+++|+||++..|...+.+..+ ...+..+. +-+++|.++ .| +.+|.+++++++++.+.
T Consensus 187 ~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-lR~G~~~~~~~~i~~l~ 249 (378)
T PRK07682 187 DLIVLSDEIYAELTYDEAYTSFASIKGMRERTILISGFSKGFAMTG-WRLGFIAAPVYFSEAML 249 (378)
T ss_pred CcEEEEehhhhhcccCCCCCChhhcccccCCEEEEecCcccccChh-hhhhhhhcCHHHHHHHH
Confidence 9999999999988655543221 11122222 337999998 68 79999999999988764
|
|
| >TIGR01007 eps_fam capsular exopolysaccharide family | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.5e-06 Score=86.29 Aligned_cols=63 Identities=21% Similarity=0.092 Sum_probs=49.9
Q ss_pred CcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccC
Q 005009 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDH 289 (719)
Q Consensus 221 ~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~ 289 (719)
+|+|||++.. +.......-+++.. -.+|+|+.....+++++..+++.++..|.++.|+|+|++
T Consensus 128 yD~ViiD~pp-----~~~~~~~~~~~~~~-D~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~gvVlN~~ 190 (204)
T TIGR01007 128 FDYIIIDTPP-----IGTVTDAAIIARAC-DASILVTDAGEIKKRDVQKAKEQLEQTGSNFLGVVLNKV 190 (204)
T ss_pred CCEEEEeCCC-----ccccchHHHHHHhC-CeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeCc
Confidence 9999999953 22212223344444 478899999999999999999999999999999999997
|
This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes. |
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.8e-06 Score=93.67 Aligned_cols=194 Identities=16% Similarity=0.128 Sum_probs=114.6
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCC-CeEEEeCChHHHHHHHHHHHHHHhhcccccccccc
Q 005009 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWA-SRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~-~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~ 496 (719)
.|.|.+++.... .+-. ....+...++.++|++..+.+.- ..++++.||++|++.++....
T Consensus 11 ~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~-------------- 71 (355)
T TIGR03301 11 SATVRDAMLVDW---CHWD--SEFNDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLV-------------- 71 (355)
T ss_pred CHHHHHHhhhhc---cCCC--HHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhcc--------------
Confidence 566777766521 2211 11236677888888887764311 257889999999999998762
Q ss_pred CCCccccCcceEEEEEeCCcccCcccccc-ccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhccccc
Q 005009 497 GKDTTEKCIELKVLALKGSYHGDTLGAME-AQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEH 575 (719)
Q Consensus 497 ~~~~~~~~~r~kII~~~~syHG~t~gals-lt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~ 575 (719)
..+.++|....+++|.....++ ..|. + ...++.++.+
T Consensus 72 -------~~~~~vi~~~~~~~~~~~~~~a~~~g~---------------------~-------~~~i~~~~~~------- 109 (355)
T TIGR03301 72 -------PRDGKLLVLINGAYGERLAKICEYLGI---------------------P-------HTDLNFSEYE------- 109 (355)
T ss_pred -------CCCCeEEEECCCchhhHHHHHHHHcCC---------------------c-------eEEEecCCCC-------
Confidence 1124677777777775321111 1110 0 0111111000
Q ss_pred ccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEE-EEccccccCCccccCCHHHHHHHHHHHHhcC
Q 005009 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGAL-IIEPVVHAAGGMHMVDPLFQRILVKECQNRK 654 (719)
Q Consensus 576 ~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAv-IvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~g 654 (719)
..| .+.+++.+.+ ++ ++..+ ++-+ ....|...+ +++|.++|++||
T Consensus 110 ----~~d------------------~~~l~~~l~~-----~~-~~~~v~~~~~--~~~~G~~~~----~~~i~~l~~~~~ 155 (355)
T TIGR03301 110 ----PPD------------------LNRIEEALAA-----DP-DITHVATVHH--ETTTGILNP----LEAIAKVARSHG 155 (355)
T ss_pred ----CCC------------------HHHHHHHHHh-----CC-CceEEEEEec--CCcccchhH----HHHHHHHHHHcC
Confidence 001 2556677653 22 33333 2222 344577766 899999999999
Q ss_pred CcEEEeccccCccccCccccccccCCCcce--eeehhccCCCccchheeEeCHHHHhhhc
Q 005009 655 IPVIFDEVFTGFWRLGVETTADLLGCVPDI--ACYGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 655 ilLI~DEVqTGfGRtG~~~a~e~~gv~PDI--vtlgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
+++|+|++++ ||.. .+....++ .|+ .+++|.++|+ .-+|.+++++++++.+.
T Consensus 156 ~~livD~~~s-~g~~--~~~~~~~~--~d~~~~s~~K~l~~~-~G~g~~~~~~~~~~~~~ 209 (355)
T TIGR03301 156 AVLIVDAMSS-FGAI--PIDIEELD--VDALIASANKCLEGV-PGFGFVIARRDLLEASA 209 (355)
T ss_pred CEEEEEeccc-cCCc--ccchhhcC--ccEEEecCCcccccC-CceeEEEECHHHHHHhh
Confidence 9999999986 6532 23333343 455 4789998763 12588999999988765
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >TIGR01969 minD_arch cell division ATPase MinD, archaeal | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.7e-06 Score=87.08 Aligned_cols=102 Identities=16% Similarity=0.192 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHH
Q 005009 193 GDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYE 272 (719)
Q Consensus 193 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~ 272 (719)
..+.+.+.+..+.+ .+|+|||.+.+|+. ..+......- -.||+|+.....++..++...+
T Consensus 94 ~~~~l~~~l~~l~~-------------~yD~VIiD~p~~~~------~~~~~~l~~a-d~vliv~~~~~~s~~~~~~~~~ 153 (251)
T TIGR01969 94 DPDKLEDVLKEIID-------------DTDFLLIDAPAGLE------RDAVTALAAA-DELLLVVNPEISSITDALKTKI 153 (251)
T ss_pred CHHHHHHHHHHHHh-------------hCCEEEEeCCCccC------HHHHHHHHhC-CeEEEEECCCCchHHHHHHHHH
Confidence 45566666666543 39999999987652 1222222222 2588999988888988888888
Q ss_pred HHHhCCCcEEEEEEccCCCC----CHHHHHHhhcCCCcEEe-cCCCCCC
Q 005009 273 SLKLRGYDVVAVVFEDHGLV----NEVPLMSYLRNRVPVLV-LPPLPQD 316 (719)
Q Consensus 273 ~l~~~~~~v~gvi~N~~~~~----~~~~l~~~~~~~~pvlg-lP~~~~~ 316 (719)
.++..+.++.|+|+|++... ..+.+.+.+ ++|+++ ||+.+..
T Consensus 154 ~~~~~~~~~~~vv~N~~~~~~~~~~~~~l~~~~--~~~~l~~Ip~~~~~ 200 (251)
T TIGR01969 154 VAEKLGTAILGVVLNRVTRDKTELGREEIETIL--EVPVLGVVPEDPEV 200 (251)
T ss_pred HHHhcCCceEEEEEECCCchhhhhHHHHHHHhh--CCcEEEEecCCHhH
Confidence 77777888999999998432 134455555 899999 9987654
|
This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown. |
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.3e-06 Score=90.79 Aligned_cols=222 Identities=14% Similarity=0.068 Sum_probs=125.2
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhccc-ccCCCCCChHHHHHHHHHHhccCCC-CCCeEEEeCChHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH-VMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIA 477 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~-~~~~~~~~~~~~~Lae~L~~~~~~~-~~~rv~f~~SGsEA~E~A 477 (719)
.++++..|... ++ . .+.+.+++++.+..... ........+....+++.+.+..+.. .-++++++++|++|+..+
T Consensus 25 ~~i~l~~g~~~--~~-~-~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~ 100 (382)
T PRK06108 25 GVLPLWFGESD--LP-T-PDFIRDAAAAALADGETFYTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLA 100 (382)
T ss_pred CeEEecCCCCC--CC-C-CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHH
Confidence 35666654432 33 2 57899998887754221 1111223455667777776544411 125799999999999988
Q ss_pred HHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccC
Q 005009 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (719)
Q Consensus 478 lKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (719)
++... .. ...|+...-+|.+.. ..+...|.
T Consensus 101 ~~~l~-----~~----------------gd~vl~~~p~y~~~~-~~~~~~g~---------------------------- 130 (382)
T PRK06108 101 AQALV-----GP----------------GDEVVAVTPLWPNLV-AAPKILGA---------------------------- 130 (382)
T ss_pred HHHhc-----CC----------------CCEEEEeCCCccchH-HHHHHCCC----------------------------
Confidence 88651 11 135777666664422 11111110
Q ss_pred cceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCcccc
Q 005009 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (719)
Q Consensus 558 ~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~ 637 (719)
..+.+|... .+ .-| .-| .+.+++.+. .++.++++... +.-.|.+.
T Consensus 131 --~~~~v~~~~------------~~--~~~--~~d--------~~~l~~~~~--------~~~~~i~l~~p-~NPtG~~~ 175 (382)
T PRK06108 131 --RVVCVPLDF------------GG--GGW--TLD--------LDRLLAAIT--------PRTRALFINSP-NNPTGWTA 175 (382)
T ss_pred --EEEEeeCCC------------CC--CCc--cCC--------HHHHHHhcC--------ccceEEEEECC-CCCCCccc
Confidence 111111000 00 000 000 244555543 13445555443 56667664
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEeccccCcccc-Cccc-c-ccccCCCcc-e--eeehhccC-CCccchheeEeCHHHHhh
Q 005009 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRL-GVET-T-ADLLGCVPD-I--ACYGKLLT-GGVIPLAATLATNAVFDS 710 (719)
Q Consensus 638 pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRt-G~~~-a-~e~~gv~PD-I--vtlgK~Lg-gG~~Plsavl~~~~i~~~ 710 (719)
+.+.+++|.++|++||+++|+||++.+|... +... . .......+. + .+++|.+| .| +.+|.+++++++.+.
T Consensus 176 -~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~RiG~~~~~~~~~~~ 253 (382)
T PRK06108 176 -SRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTG-WRLGWLVAPPALGQV 253 (382)
T ss_pred -CHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCcc-cceeeeeCCHHHHHH
Confidence 7899999999999999999999999887432 2111 1 111111122 2 27999997 57 699999999988876
Q ss_pred hc
Q 005009 711 FV 712 (719)
Q Consensus 711 ~~ 712 (719)
+.
T Consensus 254 ~~ 255 (382)
T PRK06108 254 LE 255 (382)
T ss_pred HH
Confidence 63
|
|
| >cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.1e-05 Score=79.18 Aligned_cols=89 Identities=15% Similarity=0.077 Sum_probs=63.3
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHh-hcCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCC------
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYR-PFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV------ 292 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~-~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~~------ 292 (719)
.+|+|||-+..++. .....+.. ..---+|+|.....-++..+...++.+++.+.++.|+|+|++...
T Consensus 67 ~yD~VIiD~pp~~~------~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~~~~~~~ 140 (169)
T cd02037 67 ELDYLVIDMPPGTG------DEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFVCPHCGK 140 (169)
T ss_pred CCCEEEEeCCCCCc------HHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCcccCCCCCC
Confidence 49999999976531 12233332 233457888888888999999999999999999999999997210
Q ss_pred -----CHHHHHHhhcC-CCcEEe-cCCCC
Q 005009 293 -----NEVPLMSYLRN-RVPVLV-LPPLP 314 (719)
Q Consensus 293 -----~~~~l~~~~~~-~~pvlg-lP~~~ 314 (719)
....+++..+. +.|++| ||+.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~ip~~~ 169 (169)
T cd02037 141 KIYIFGKGGGEKLAEELGVPLLGKIPLDP 169 (169)
T ss_pred cccccCCccHHHHHHHcCCCEEEeccCCC
Confidence 11234444433 899999 99865
|
Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter. |
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.1e-05 Score=89.00 Aligned_cols=71 Identities=14% Similarity=0.096 Sum_probs=52.0
Q ss_pred eeeeccccccccCCCCCC-CHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATL-QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIAL 478 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~-hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~Al 478 (719)
.+|..++-+ .++|-+. .+++++|+++.++.+. ...+...+++++++++.+. +.++++++|++|+..|+
T Consensus 9 ~~ina~g~~--t~~g~s~~~~~v~~a~~~~~~~~~------~~~~~~~~~~~~~a~~~g~---~~~~~~~g~t~al~~al 77 (363)
T TIGR01437 9 KVINASGKM--TILGVSTVSDEVADAQKRGAQNYF------EIKELVNKTGEYIANLLGV---EDAVIVSSASAGIAQSV 77 (363)
T ss_pred eEEECCcEe--ecCCCCCCCHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHHhhCC---CeEEEEcCHHHHHHHHH
Confidence 455554444 2444431 6899999999876542 2346677889999998873 57899999999999999
Q ss_pred HHH
Q 005009 479 KMA 481 (719)
Q Consensus 479 KlA 481 (719)
+..
T Consensus 78 ~al 80 (363)
T TIGR01437 78 AAV 80 (363)
T ss_pred HHH
Confidence 877
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.6e-06 Score=93.11 Aligned_cols=208 Identities=13% Similarity=0.090 Sum_probs=122.1
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhh---hcccccCCCC-----CChHHHHHHHHHHhccCCCCCCeEEEeCChH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAA---RFGHVMFPEN-----VYEPALECAELLLQGVGKGWASRAYFSDNGS 471 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~---~~~~~~~~~~-----~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGs 471 (719)
.|+|..+ .+-- ++.+.+++.+.+. .+........ ..+...++.++++++++.. .+.++|++||+
T Consensus 5 iyld~a~------~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~-~~~v~~~~g~t 76 (404)
T PRK14012 5 IYLDYSA------TTPV-DPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGAD-PREIVFTSGAT 76 (404)
T ss_pred EEecCcC------CCCC-CHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcC-cCeEEEeCCHH
Confidence 6888554 4566 8999999988775 2221110000 0134556777888888743 35699999999
Q ss_pred HHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCC
Q 005009 472 TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPP 551 (719)
Q Consensus 472 EA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p 551 (719)
+|+..+++.+.+.+. .. ...||.-...| .+...+..... ..+. .
T Consensus 77 ~al~~~l~~l~~~~~-~~----------------gd~Vi~~~~~~-~s~~~~~~~~~---~~g~-------------~-- 120 (404)
T PRK14012 77 ESDNLAIKGAAHFYQ-KK----------------GKHIITSKTEH-KAVLDTCRQLE---REGF-------------E-- 120 (404)
T ss_pred HHHHHHHHHHHHhhc-CC----------------CCEEEEecCcc-HHHHHHHHHHH---hCCC-------------E--
Confidence 999999987622221 11 12466655554 43332221110 0000 0
Q ss_pred cccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccccc
Q 005009 552 TVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHA 631 (719)
Q Consensus 552 ~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg 631 (719)
...++.+.. ++ -| .+.+++.+. .+..+|++.-+ +.
T Consensus 121 -------~~~v~~~~~------------g~---------~d--------~~~l~~~i~--------~~t~lv~~~~~-~n 155 (404)
T PRK14012 121 -------VTYLDPQSN------------GI---------ID--------LEKLEAAMR--------DDTILVSIMHV-NN 155 (404)
T ss_pred -------EEEEccCCC------------Cc---------CC--------HHHHHHhcC--------CCCEEEEEECc-CC
Confidence 001111100 00 00 245666664 23457777776 78
Q ss_pred CCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeeh--hccCCCccchheeEeCHHH
Q 005009 632 AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAV 707 (719)
Q Consensus 632 ~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~LggG~~Plsavl~~~~i 707 (719)
..|.+.+ +++|.++|++||+++|+|++|+ +|..- +-.. ...+|+++++ |.+|.+ .+|+++++++.
T Consensus 156 ~tG~~~~----~~~I~~la~~~g~~vivD~a~~-~g~~~--~~~~--~~~~D~~~~s~~K~~gp~--g~G~l~~~~~~ 222 (404)
T PRK14012 156 EIGVIQD----IAAIGEICRERGIIFHVDAAQS-VGKVP--IDLS--KLKVDLMSFSAHKIYGPK--GIGALYVRRKP 222 (404)
T ss_pred Cccchhh----HHHHHHHHHHcCCEEEEEcchh-cCCcc--cCcc--cCCCCEEEEehhhccCCC--ceEEEEEecCC
Confidence 8898887 8999999999999999999996 43321 1111 2458999887 976532 36778887764
|
|
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.5e-06 Score=91.18 Aligned_cols=203 Identities=10% Similarity=0.008 Sum_probs=118.3
Q ss_pred CCCCCCCHHHHHHHHHhhhhcccccCCCCC-------ChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHH
Q 005009 412 GPDATLQIELARDMGYTAARFGHVMFPENV-------YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRK 484 (719)
Q Consensus 412 ~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~-------~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~ 484 (719)
..|-- ++.+.+|+.+.+..... ...... .+...++.++|+++++.+ -+.++|++++++|++.+++.. ..
T Consensus 6 ~~~~~-~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~-~~~v~~~~g~t~a~~~~l~~l-~~ 81 (353)
T TIGR03235 6 ATTPI-DPAVAEAMLPWLLEEFG-NPSSRTHEFGHNAKKAVERARKQVAEALGAD-TEEVIFTSGATESNNLAILGL-AR 81 (353)
T ss_pred CCCCC-CHHHHHHHHHHHHhcCC-CCCchhhHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEeCCHHHHHHHHHHHH-HH
Confidence 45566 89999999988754211 111101 134567788888887743 357999999999999999766 22
Q ss_pred hhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecC
Q 005009 485 FSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSL 564 (719)
Q Consensus 485 ~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 564 (719)
.... +++..||. ....|.+....+..... .+ . ....++.
T Consensus 82 ~~~~---------------~g~~~vi~-~~~~~~s~~~~~~~~~~---~G-----------~-----------~v~~v~~ 120 (353)
T TIGR03235 82 AGEQ---------------KGKKHIIT-SAIEHPAVLEPIRALER---NG-----------F-----------TVTYLPV 120 (353)
T ss_pred hccc---------------CCCCeeeE-cccccHHHHHHHHHHHh---cC-----------C-----------EEEEEcc
Confidence 1111 11234444 44445543332221100 00 0 0011111
Q ss_pred cchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHH
Q 005009 565 PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQR 644 (719)
Q Consensus 565 P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~ 644 (719)
+... ..| .+.+++.+. .+...|++.-+ +...|.+.+ ++
T Consensus 121 ~~~~-----------~~d------------------~~~l~~~l~--------~~~~lv~~~~~-~n~tG~~~~----~~ 158 (353)
T TIGR03235 121 DESG-----------RID------------------VDELADAIR--------PDTLLVSIMHV-NNETGSIQP----IR 158 (353)
T ss_pred CCCC-----------cCC------------------HHHHHHhCC--------CCCEEEEEEcc-cCCceeccC----HH
Confidence 1000 000 245555553 24567777776 888899987 89
Q ss_pred HHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeeh--hccCCCccchheeEeCHHHH
Q 005009 645 ILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVF 708 (719)
Q Consensus 645 ~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~LggG~~Plsavl~~~~i~ 708 (719)
+|.++|++||+++|+|++|. +|..- +-.+ ....|+++++ |.+ |-.-+|+++++++..
T Consensus 159 ~I~~l~~~~~~~~ivD~a~~-~g~~~--~~~~--~~~~D~~~~s~~K~~--gp~g~g~l~~~~~~~ 217 (353)
T TIGR03235 159 EIAEVLEAHEAFFHVDAAQV-VGKIT--VDLS--ADRIDLISCSGHKIY--GPKGIGALVIRKRGK 217 (353)
T ss_pred HHHHHHHHcCCEEEEEchhh-cCCcc--cccc--ccCCCEEEeehhhcC--CCCceEEEEEccCcc
Confidence 99999999999999999995 44321 2122 2358999887 964 311267888888753
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.4e-06 Score=96.49 Aligned_cols=162 Identities=14% Similarity=0.138 Sum_probs=107.0
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
..++...+|+++|+++.+. +.+++++||+.|++.+++..+ +.| ..||+....|+|.
T Consensus 60 ~~~p~~~~le~~lA~l~g~---~~al~~~SG~~Ai~~al~all-----~pG----------------d~VIv~~~~y~~t 115 (427)
T PRK05994 60 ITNPTNAVLEERVAALEGG---TAALAVASGHAAQFLVFHTLL-----QPG----------------DEFIAARKLYGGS 115 (427)
T ss_pred CCCccHHHHHHHHHHHhCC---CcEEEEcCHHHHHHHHHHHHh-----CCC----------------CEEEEecCcchhH
Confidence 3456678899999998874 568999999999999998762 111 3688888888774
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
.. .+... .... |.....++ ..|
T Consensus 116 ~~-~~~~~-------------~~~~-------------G~~v~~vd--------------~~d----------------- 137 (427)
T PRK05994 116 IN-QFGHA-------------FKSF-------------GWQVRWAD--------------ADD----------------- 137 (427)
T ss_pred HH-HHHHH-------------HHhc-------------CcEEEEEC--------------CCC-----------------
Confidence 21 11000 0000 00000000 011
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccC
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~g 679 (719)
.+.+++.+. .++.+|++|.. ....|.+.+ +++|.++|++||+++|+||+++. | +.+..+.
T Consensus 138 -~~~l~~ai~--------~~tklV~vesp-~NptG~v~d----l~~I~~la~~~gi~livD~a~a~----~--~~~~pl~ 197 (427)
T PRK05994 138 -PASFERAIT--------PRTKAIFIESI-ANPGGTVTD----IAAIAEVAHRAGLPLIVDNTLAS----P--YLIRPIE 197 (427)
T ss_pred -HHHHHHhcC--------cCCeEEEEECC-CCCCCeecC----HHHHHHHHHHcCCEEEEECCccc----c--ccCCccc
Confidence 134555553 25678999986 788888876 89999999999999999999962 2 2223345
Q ss_pred CCcceee--ehhccCC-CccchheeEeC
Q 005009 680 CVPDIAC--YGKLLTG-GVIPLAATLAT 704 (719)
Q Consensus 680 v~PDIvt--lgK~Lgg-G~~Plsavl~~ 704 (719)
..+|+++ +.|.+|| | -++|++++.
T Consensus 198 ~gaDivv~S~tK~lgg~~-~~~gG~v~~ 224 (427)
T PRK05994 198 HGADIVVHSLTKFLGGHG-NSMGGIIVD 224 (427)
T ss_pred cCCcEEEEcCccccCCCC-CcEEEEEEe
Confidence 6789885 7899986 4 467776663
|
|
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.9e-06 Score=95.48 Aligned_cols=172 Identities=19% Similarity=0.237 Sum_probs=108.9
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
..++...+|+++|+++.+ .+.+++++||++|+..++.... +.| ..||.....|.+
T Consensus 73 ~~~Pt~~~LE~~lA~l~g---~~~~l~~~sG~~Ai~~al~al~-----~~G----------------D~Vl~~~~~Y~~- 127 (418)
T PLN02242 73 HFNPTVLNLGRQMAALEG---TEAAYCTASGMSAISSVLLQLC-----SSG----------------GHVVASNTLYGG- 127 (418)
T ss_pred CCChhHHHHHHHHHHHhC---CCeEEEEccHHHHHHHHHHHHh-----CCC----------------CEEEEcCCcHHH-
Confidence 457788999999999887 3678899999999999998662 112 356666655533
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
+...+..... +. .+ .... +.+. .|
T Consensus 128 ~~~~~~~~~~---~~---------~G-------------~~~~-----------------~~d~-------~d------- 151 (418)
T PLN02242 128 THALLAHFLP---RK---------CN-------------ITTT-----------------FVDI-------TD------- 151 (418)
T ss_pred HHHHHHHhhh---hc---------cC-------------ceEE-----------------EcCC-------CC-------
Confidence 2221110000 00 00 0000 1110 00
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccC
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~g 679 (719)
.+.+++.+. +.+..+|++|.. ..-.|.+.+ +++|.++|++||+++|+||+++.+ .... ..+|
T Consensus 152 -~e~l~~~i~-------~~~tklV~lesp-~NPtG~v~d----l~~I~~la~~~gi~livDea~~~~-~~~~----~~~g 213 (418)
T PLN02242 152 -LEAVKKAVV-------PGKTKVLYFESI-SNPTLTVAD----IPELARIAHEKGVTVVVDNTFAPM-VLSP----ARLG 213 (418)
T ss_pred -HHHHHHhcC-------cCCCEEEEEecC-CCCCCcccC----HHHHHHHHHHhCCEEEEECCCCcc-CCCH----HHcC
Confidence 245666554 124678999976 777787765 899999999999999999999643 2211 1223
Q ss_pred CCccee--eehhccCCCccch-heeEeCHHHHhhhc
Q 005009 680 CVPDIA--CYGKLLTGGVIPL-AATLATNAVFDSFV 712 (719)
Q Consensus 680 v~PDIv--tlgK~LggG~~Pl-savl~~~~i~~~~~ 712 (719)
.||+ +++|.++|+--.+ |++++++++++.+.
T Consensus 214 --~divv~S~SK~l~g~g~~~gG~iv~~~~li~~l~ 247 (418)
T PLN02242 214 --ADVVVHSISKFISGGADIIAGAVCGPAELVNSMM 247 (418)
T ss_pred --CcEEEEeCccccCCCCCceEEEEEcCHHHHHHHH
Confidence 5776 6899997632453 77888888877654
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.1e-06 Score=90.36 Aligned_cols=209 Identities=11% Similarity=0.094 Sum_probs=121.7
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlK 479 (719)
+.|||.+|.. .++. +|++++|+++++...... ......+|.+.++++++-. -+.+++++++++++..+++
T Consensus 20 ~~i~l~~~~~--~~~~--~~~~~~a~~~~~~~~~~y-----~~~~~~~lr~~ia~~~~~~-~~~i~~~~G~~~~l~~~~~ 89 (346)
T TIGR01141 20 EVIKLNSNEN--PFGP--PPKAKEALRAEADKLHRY-----PDPDPAELKQALADYYGVD-PEQILLGNGSDEIIELLIR 89 (346)
T ss_pred ceEEccCCCC--CCCC--CHHHHHHHHHhHHHhhcC-----CCCCHHHHHHHHHHHhCcC-hHHEEEcCCHHHHHHHHHH
Confidence 7899987533 3443 799999999887543211 1122356777777776522 3579999999999988877
Q ss_pred HHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcc
Q 005009 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (719)
Q Consensus 480 lA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (719)
... +. ..+|+....+|..... .....| .
T Consensus 90 ~l~-----~~----------------gd~v~~~~p~y~~~~~-~~~~~g------------------------------~ 117 (346)
T TIGR01141 90 AFL-----EP----------------GDAVLVPPPTYSMYEI-SAKIHG------------------------------A 117 (346)
T ss_pred Hhc-----CC----------------CCEEEEcCCCHHHHHH-HHHHcC------------------------------C
Confidence 651 11 1367777766632111 011001 0
Q ss_pred eeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCC
Q 005009 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (719)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (719)
..+.+|.. .+ + ..| .+.+++.+. .++.+|++... ....|...+
T Consensus 118 ~~~~~~~~-------------~~----~--~~d--------~~~l~~~~~--------~~~~~v~l~~p-~NptG~~~~- 160 (346)
T TIGR01141 118 EVVKVPLD-------------ED----G--QLD--------LEDILVAID--------DKPKLVFLCSP-NNPTGNLLS- 160 (346)
T ss_pred eEEEeccC-------------CC----C--CCC--------HHHHHHhcC--------CCCCEEEEeCC-CCCCCCCCC-
Confidence 01111100 00 0 001 234444332 24556666644 677788876
Q ss_pred HHHHHHHHHHHHhc--CCcEEEeccccCccccCccccccccCCCccee---eehhccC-CCccchheeEeCHHHHhhhcC
Q 005009 640 PLFQRILVKECQNR--KIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 640 ~~fl~~Lr~Lc~k~--gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv---tlgK~Lg-gG~~Plsavl~~~~i~~~~~~ 713 (719)
.++++++|+.+ |+++|+||++..|...+..+. .....++++ +++|.+| .| +.+|.+++++++.+.+..
T Consensus 161 ---~~~~~~l~~~~~~~~~ii~D~~y~~~~~~~~~~~--~~~~~~~~i~~~S~sK~~g~~G-~r~G~~~~~~~~~~~~~~ 234 (346)
T TIGR01141 161 ---RSDIEAVLERTPEDALVVVDEAYGEFSGEPSTLP--LLAEYPNLIVLRTLSKAFGLAG-LRIGYAIANAEIIDALNK 234 (346)
T ss_pred ---HHHHHHHHHhCCCCcEEEEECchhhhcCCccHHH--HHhhCCCEEEEehhhHhhhchh-hhceeeecCHHHHHHHHh
Confidence 55566666655 999999999987754322221 112234544 6899996 47 688999999999887753
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=6.6e-06 Score=93.19 Aligned_cols=171 Identities=15% Similarity=0.129 Sum_probs=100.1
Q ss_pred hHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccc
Q 005009 443 EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLG 522 (719)
Q Consensus 443 ~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~g 522 (719)
+...+|.++|++.++ .+.+++++||++|+..|++.+.+.+..+.+. .....||+-..+|.+...
T Consensus 63 ~~~~~fe~~lA~~~g---~~~~v~~~sGt~al~~aL~al~~~~~~~~~~------------~pGd~VIv~~~t~~a~~~- 126 (438)
T PRK15407 63 RFNDAFEKKLAEFLG---VRYALLVNSGSSANLLAFSALTSPKLGDRAL------------KPGDEVITVAAGFPTTVN- 126 (438)
T ss_pred hhHHHHHHHHHHHhC---CCeEEEECCHHHHHHHHHHHHhhccccccCC------------CCCCEEEECCCCcHHHHH-
Confidence 446789999999987 3579999999999999998763222111111 112468888777765322
Q ss_pred cccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecC-cchhhhcccccccccccCccchhhcccCchhHHHHHH
Q 005009 523 AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSL-PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYS 601 (719)
Q Consensus 523 alslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~ 601 (719)
++...|.. | ..++. |.. ++ -| .
T Consensus 127 ~v~~~G~~--------------------p--------v~vdvd~~~------------~~---------id--------~ 149 (438)
T PRK15407 127 PIIQNGLV--------------------P--------VFVDVELPT------------YN---------ID--------A 149 (438)
T ss_pred HHHHcCCE--------------------E--------EEEecCCCc------------CC---------cC--------H
Confidence 22211100 0 00110 000 11 01 2
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCC
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~ 681 (719)
+.+++.+. .++.+|++.+. .|. +..+++|+++|++||+++|.|++|+ +| ..+.-...|-.
T Consensus 150 ~~le~~i~--------~~tkaVi~~~~-~G~-------p~dl~~I~~la~~~gi~vIeDaa~a-~G---~~~~g~~~G~~ 209 (438)
T PRK15407 150 SLLEAAVS--------PKTKAIMIAHT-LGN-------PFDLAAVKAFCDKHNLWLIEDNCDA-LG---STYDGRMTGTF 209 (438)
T ss_pred HHHHHHcC--------cCCeEEEEeCC-CCC-------hhhHHHHHHHHHHCCCEEEEECccc-hh---hhcCCeeeecc
Confidence 45565553 35678888875 442 2458999999999999999999996 43 22221222333
Q ss_pred cceeeeh----hccCCCccchheeEeCHHHH
Q 005009 682 PDIACYG----KLLTGGVIPLAATLATNAVF 708 (719)
Q Consensus 682 PDIvtlg----K~LggG~~Plsavl~~~~i~ 708 (719)
-|+.||| |.++.| .-|+++++++-+
T Consensus 210 gd~~~fSf~~~k~~~~g--eGG~l~t~d~~l 238 (438)
T PRK15407 210 GDIATLSFYPAHHITMG--EGGAVFTNDPLL 238 (438)
T ss_pred CceEEEeCCCCCCcccc--CceEEEECCHHH
Confidence 4777665 667654 345677765433
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.35 E-value=8e-06 Score=89.64 Aligned_cols=209 Identities=11% Similarity=0.125 Sum_probs=122.2
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlK 479 (719)
+++||.++. +.+| . +|.+.+++++.+..+.. +......+|.+.+++..+-+ -+.++++++.+++...++.
T Consensus 33 ~~i~l~~~~--~~~~-~-~~~~~~a~~~~~~~~~~-----y~~~~~~~lr~~ia~~~~~~-~~~i~~t~G~~~~l~~~~~ 102 (367)
T PRK02731 33 DIIKLASNE--NPLG-P-SPKAIEAIRAAADELHR-----YPDGSGFELKAALAEKFGVD-PERIILGNGSDEILELLAR 102 (367)
T ss_pred ceEEecCCC--CCCC-C-CHHHHHHHHHHHHhhcC-----CCCCcHHHHHHHHHHHhCcC-HHHEEEcCCHHHHHHHHHH
Confidence 899998853 3466 4 78899999987765322 11122346777777766532 2578888888877766555
Q ss_pred HHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcc
Q 005009 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (719)
Q Consensus 480 lA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (719)
.. . +. ...|+..+-+|.+....+ ...|.
T Consensus 103 ~l----~-~~----------------gd~vl~~~p~y~~~~~~~-~~~g~------------------------------ 130 (367)
T PRK02731 103 AY----L-GP----------------GDEVIYSEHGFAVYPIAA-QAVGA------------------------------ 130 (367)
T ss_pred Hh----c-CC----------------CCEEEEecCCHHHHHHHH-HHcCC------------------------------
Confidence 43 1 11 136777777765432211 11110
Q ss_pred eeecCcc-hhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccC
Q 005009 560 WILSLPE-WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (719)
Q Consensus 560 ~~~~~P~-~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~p 638 (719)
..+++|. .+ ..| .+.+++.+. .+..+|++.-. +.-.|.+.+
T Consensus 131 ~~~~~~~~~~-----------~~~------------------~~~l~~~~~--------~~~~~v~l~~p-~nptG~~~~ 172 (367)
T PRK02731 131 KPVEVPAKDY-----------GHD------------------LDAMLAAVT--------PRTRLVFIANP-NNPTGTYLP 172 (367)
T ss_pred eEEEecccCC-----------CCC------------------HHHHHHHhC--------CCCcEEEEeCC-CCCCCcCCC
Confidence 0111110 00 000 244555553 13344555543 677787776
Q ss_pred CHHHHHHHHHHHHh--cCCcEEEeccccCccccCc-cccccccCCCccee---eehhccC-CCccchheeEeCHHHHhhh
Q 005009 639 DPLFQRILVKECQN--RKIPVIFDEVFTGFWRLGV-ETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 639 p~~fl~~Lr~Lc~k--~gilLI~DEVqTGfGRtG~-~~a~e~~gv~PDIv---tlgK~Lg-gG~~Plsavl~~~~i~~~~ 711 (719)
.++++++|+. +|+++|+||++..+...+. ..+....+..++++ +++|.+| .| +.+|.+++++++.+.+
T Consensus 173 ----~~~l~~l~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~RiG~l~~~~~~~~~l 247 (367)
T PRK02731 173 ----AEEVERFLAGVPPDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAYGLAG-LRVGYGIAPPEIIDAL 247 (367)
T ss_pred ----HHHHHHHHHhCCCCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehHhhcCcc-cceeeeeCCHHHHHHH
Confidence 4455555554 4999999999987654332 22233333345655 7999997 68 6999999999998877
Q ss_pred cC
Q 005009 712 VG 713 (719)
Q Consensus 712 ~~ 713 (719)
..
T Consensus 248 ~~ 249 (367)
T PRK02731 248 NR 249 (367)
T ss_pred HH
Confidence 53
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.4e-06 Score=90.43 Aligned_cols=195 Identities=17% Similarity=0.059 Sum_probs=115.4
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccC
Q 005009 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~ 497 (719)
++++.+|+.+.+.. + ......+...++.+.|++.++.+.-..+++++||++|+..+++... ..|
T Consensus 11 ~~~v~~a~~~~~~~--~--~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~~-----~~g------- 74 (356)
T cd06451 11 PPRVLKAMNRPMLG--H--RSPEFLALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNLL-----EPG------- 74 (356)
T ss_pred CHHHHHHhCCCccC--C--CCHHHHHHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHhC-----CCC-------
Confidence 67777777543321 1 1011234466888888888874212357899999999988887541 112
Q ss_pred CCccccCcceEEEEEeCCcccCcccc-ccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccc
Q 005009 498 KDTTEKCIELKVLALKGSYHGDTLGA-MEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHK 576 (719)
Q Consensus 498 ~~~~~~~~r~kII~~~~syHG~t~ga-lslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~ 576 (719)
..||+...+|++..... ....|.. ...++....+
T Consensus 75 ---------~~vl~~~~~~~~~~~~~~~~~~g~~----------------------------~~~v~~~~~~-------- 109 (356)
T cd06451 75 ---------DKVLVGVNGVFGDRWADMAERYGAD----------------------------VDVVEKPWGE-------- 109 (356)
T ss_pred ---------CEEEEecCCchhHHHHHHHHHhCCC----------------------------eEEeecCCCC--------
Confidence 36777766665532111 1111100 0011111000
Q ss_pred cccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCc
Q 005009 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656 (719)
Q Consensus 577 ~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gil 656 (719)
..| .+.+++.+.+ .++.+|++-.. +...|.+.+ ++++.++|+++|++
T Consensus 110 ---~~~------------------~~~l~~~i~~-------~~~~~v~i~~~-~~~~G~~~~----~~~i~~~a~~~~~~ 156 (356)
T cd06451 110 ---AVS------------------PEEIAEALEQ-------HDIKAVTLTHN-ETSTGVLNP----LEGIGALAKKHDAL 156 (356)
T ss_pred ---CCC------------------HHHHHHHHhc-------cCCCEEEEecc-CCCcccccC----HHHHHHHHHhcCCE
Confidence 001 2456666642 24455655554 566788776 88999999999999
Q ss_pred EEEeccccCccccCccccccccCCCcceeee--hhccCCCccchheeEeCHHHHhhhc
Q 005009 657 VIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 657 LI~DEVqTGfGRtG~~~a~e~~gv~PDIvtl--gK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
+|+|++|. +|.. .+....+ .+|+++. .|.++++ ..+|++++++++++.+.
T Consensus 157 li~D~~~~-~g~~--~~~~~~~--~~d~~~~s~~K~l~~p-~g~G~l~~~~~~~~~~~ 208 (356)
T cd06451 157 LIVDAVSS-LGGE--PFRMDEW--GVDVAYTGSQKALGAP-PGLGPIAFSERALERIK 208 (356)
T ss_pred EEEeeehh-ccCc--ccccccc--CccEEEecCchhccCC-CCcceeEECHHHHHHHH
Confidence 99999985 5432 2222233 3577654 6999875 46789999999887654
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.9e-05 Score=87.58 Aligned_cols=91 Identities=16% Similarity=0.182 Sum_probs=64.6
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc-ccccccc-CCC-ccee--eehhccC-
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLL-GCV-PDIA--CYGKLLT- 692 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~-~~a~e~~-gv~-PDIv--tlgK~Lg- 692 (719)
++.+|++... +.-.|... +.+.+++|.++|++||+++|+||++.+|.-.+. ......+ +.. .+|+ +++|.+|
T Consensus 159 ~~~~v~l~~p-~NPtG~~~-~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~ 236 (387)
T PRK07777 159 RTRALIVNSP-HNPTGTVL-TAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNV 236 (387)
T ss_pred ccEEEEEcCC-CCCCCccC-CHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhccC
Confidence 4556667654 67778765 788999999999999999999999987632232 1111111 111 2333 7999998
Q ss_pred CCccchheeEeCHHHHhhhc
Q 005009 693 GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 693 gG~~Plsavl~~~~i~~~~~ 712 (719)
.| +-+|++++++++.+.+.
T Consensus 237 ~G-lRiG~~~~~~~l~~~~~ 255 (387)
T PRK07777 237 TG-WKIGWACGPAPLIAAVR 255 (387)
T ss_pred cC-ceeEEEecCHHHHHHHH
Confidence 68 78999999998887664
|
|
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.2e-05 Score=88.25 Aligned_cols=208 Identities=10% Similarity=0.047 Sum_probs=121.6
Q ss_pred CCCCCCCHHHHHHHHHhhhhcccccCCCC------CChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHh
Q 005009 412 GPDATLQIELARDMGYTAARFGHVMFPEN------VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKF 485 (719)
Q Consensus 412 ~lGH~~hP~V~~Av~~q~~~~~~~~~~~~------~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~ 485 (719)
..|-- .+.+.+|+++.+.........+. ..+...++.+.|+++++...-+.+++++||++|+..+++.+. .
T Consensus 7 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~-~- 83 (373)
T cd06453 7 ATSQK-PQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLG-R- 83 (373)
T ss_pred cccCC-CHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhh-h-
Confidence 46667 89999999887755322110001 123345666788887764212479999999999999998772 1
Q ss_pred hccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCc
Q 005009 486 SFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP 565 (719)
Q Consensus 486 ~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P 565 (719)
.. ....+||+...+|-+. ........ . ..+ . ....++..
T Consensus 84 -~~---------------~~g~~vl~~~~~~~~~-~~~~~~~~-~-~~g-----------~-----------~~~~v~~~ 122 (373)
T cd06453 84 -AN---------------KPGDEIVTSVMEHHSN-IVPWQQLA-E-RTG-----------A-----------KLKVVPVD 122 (373)
T ss_pred -cC---------------CCCCEEEECcchhHHH-HHHHHHHH-h-hcC-----------c-----------EEEEeecC
Confidence 00 0123566665444331 11111000 0 000 0 00111111
Q ss_pred chhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHH
Q 005009 566 EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRI 645 (719)
Q Consensus 566 ~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~ 645 (719)
+.. .-| .+.+++.+. +++.+|++.-+ ....|...+ +++
T Consensus 123 ~~~---------------------~~d--------~~~l~~~l~--------~~~~~v~~~~~-~~~tG~~~~----~~~ 160 (373)
T cd06453 123 DDG---------------------QLD--------LEALEKLLT--------ERTKLVAVTHV-SNVLGTINP----VKE 160 (373)
T ss_pred CCC---------------------CcC--------HHHHHHHhc--------CCceEEEEeCc-ccccCCcCC----HHH
Confidence 000 001 245666664 24567777654 566788877 799
Q ss_pred HHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeeh--hccCCCccchheeEeCHHHHhhhc
Q 005009 646 LVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 646 Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~LggG~~Plsavl~~~~i~~~~~ 712 (719)
|.++|++||++||+|++++ +|... + ......+|+++++ |.+++ .-+|.+++++++.+.+.
T Consensus 161 i~~~~~~~~~~li~D~a~~-~~~~~--~--~~~~~~~d~~~~s~~K~~~~--~g~g~~~~~~~~~~~~~ 222 (373)
T cd06453 161 IGEIAHEAGVPVLVDGAQS-AGHMP--V--DVQDLGCDFLAFSGHKMLGP--TGIGVLYGKEELLEEMP 222 (373)
T ss_pred HHHHHHHcCCEEEEEhhhh-cCcee--e--eccccCCCEEEeccccccCC--CCcEEEEEchHHhhcCC
Confidence 9999999999999999996 43321 1 1123457999888 99886 34688889999887654
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.34 E-value=2e-06 Score=92.81 Aligned_cols=214 Identities=15% Similarity=0.124 Sum_probs=142.6
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhccccc--CCC--CCChHHHHHHH
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM--FPE--NVYEPALECAE 450 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~--~~~--~~~~~~~~Lae 450 (719)
.+.++++.-+.+ ...||+ .+++|.| ++.+|...|+++.+.+...+.+++-.. ..+ .+-+.+.+|.+
T Consensus 77 ~~~v~e~~~~~~---~~i~G~----~~~N~aS---~NfL~l~~~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE~ 146 (467)
T KOG1358|consen 77 NTPVLESVMLPH---VTIDGK----DVLNFAS---ANFLGLIENEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEK 146 (467)
T ss_pred CCcccccccCCc---eEecCc----eeecccc---hhhhhhcccHHHHHHHHHHHHHhCCCCcCCCcccccceeecccHH
Confidence 345677766664 457899 9999888 778898889999999999999986543 111 24678899999
Q ss_pred HHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCC
Q 005009 451 LLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS 530 (719)
Q Consensus 451 ~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~ 530 (719)
+|++.+|- +..+.-+-|-.+++.++..- + .|.+||..+.+-|=...-++.++...
T Consensus 147 ~iakF~G~---E~aivYs~gF~ti~S~ipaf----s------------------KrGDIi~~de~~nfaIq~GlqlSRS~ 201 (467)
T KOG1358|consen 147 RIAKFMGT---EDAIVYSYGFSTIESAIPAF----S------------------KRGDIIFVDEAVNFAIQKGLQLSRST 201 (467)
T ss_pred HHHHhhCC---cceeeeccccchhhhcchhh----h------------------ccCcEEEEehhhhHHHHHHHhhhhhe
Confidence 99999984 55555566778888887643 2 23478877776554333333333110
Q ss_pred CCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhc
Q 005009 531 PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQ 610 (719)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~ 610 (719)
..+| .+||. +.+|+.+.+
T Consensus 202 --------------i~~F------------------------------khndm------------------~~lerll~E 219 (467)
T KOG1358|consen 202 --------------ISYF------------------------------KHNDM------------------EDLERLLPE 219 (467)
T ss_pred --------------eEEe------------------------------cCCCH------------------HHHHHhccC
Confidence 0000 13443 233333322
Q ss_pred CC--CCCCCC---cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc--cccccccCCC--
Q 005009 611 NP--GLKVSG---CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETTADLLGCV-- 681 (719)
Q Consensus 611 ~~--~~~~~~---~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~--~~a~e~~gv~-- 681 (719)
.. ..+++. ..--+++|.+ .-..|.+.| ++++.++..||..-+|+||-.+ ||-.|+ .+..+|+|+.
T Consensus 220 ~~~~~~K~~k~~~~Rrfiv~EGl-~~N~g~i~p----l~~iv~lk~Kyk~RvildEs~S-fG~lg~~GrGvteH~~v~~~ 293 (467)
T KOG1358|consen 220 QEDEDQKNPKKALTRRFIVVEGL-YANTGDICP----LPEIVKLKNKYKFRVILDESLS-FGVLGKTGRGVTEHFGVPIT 293 (467)
T ss_pred cchhhhhccccccceEEEEEEee-ccCCCcccc----cHHHHHHHhhheEEEEEecccc-cccccccCccccccCCCCcc
Confidence 11 002222 2457899997 888899999 9999999999999999999997 555555 4677899985
Q ss_pred -cceee--ehhcc
Q 005009 682 -PDIAC--YGKLL 691 (719)
Q Consensus 682 -PDIvt--lgK~L 691 (719)
-|+++ +.-+|
T Consensus 294 ~iDiv~~sm~~al 306 (467)
T KOG1358|consen 294 DIDIVTASMETAL 306 (467)
T ss_pred ceeeeeecccccc
Confidence 46665 34444
|
|
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=98.31 E-value=7.8e-06 Score=89.93 Aligned_cols=205 Identities=11% Similarity=0.077 Sum_probs=120.1
Q ss_pred CCCCCCHHHHHHHHHhhhhc-ccccC-CC----CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhh
Q 005009 413 PDATLQIELARDMGYTAARF-GHVMF-PE----NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486 (719)
Q Consensus 413 lGH~~hP~V~~Av~~q~~~~-~~~~~-~~----~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~ 486 (719)
.+-- ++++.+|+.+.+... ..... .. ...+...++.++|+++++.. -+.+.|+++|++|+..+++.+++.+.
T Consensus 8 ~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~-~~~v~~t~~~t~a~~~~l~~~~~~~~ 85 (364)
T PLN02651 8 TTPI-DPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGAD-PKEIIFTSGATESNNLAIKGVMHFYK 85 (364)
T ss_pred CCCC-CHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEeCCHHHHHHHHHHHHHHhcc
Confidence 4556 899999998877542 11110 00 01233556777888887643 35799999999999999988733221
Q ss_pred ccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcc
Q 005009 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE 566 (719)
Q Consensus 487 ~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~ 566 (719)
+. ..+||.....|++ ....+..-.. .+ . ....++.+.
T Consensus 86 -~~----------------g~~vl~~~~~h~s-~~~~~~~~~~---~g-----------~-----------~v~~v~~~~ 122 (364)
T PLN02651 86 -DK----------------KKHVITTQTEHKC-VLDSCRHLQQ---EG-----------F-----------EVTYLPVKS 122 (364)
T ss_pred -CC----------------CCEEEEcccccHH-HHHHHHHHHh---cC-----------C-----------EEEEEccCC
Confidence 11 2356665555444 2222111000 00 0 001111110
Q ss_pred hhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHH
Q 005009 567 WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRIL 646 (719)
Q Consensus 567 ~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~L 646 (719)
.. . -| .+.+++.+. +++..|++..+ ....|.+.+ +++|
T Consensus 123 ~~-------------~--------~d--------~~~l~~~i~--------~~t~lv~v~~~-~n~tG~~~~----l~~I 160 (364)
T PLN02651 123 DG-------------L--------VD--------LDELAAAIR--------PDTALVSVMAV-NNEIGVIQP----VEEI 160 (364)
T ss_pred CC-------------c--------CC--------HHHHHHhcC--------CCcEEEEEECC-CCCceeccc----HHHH
Confidence 00 0 00 245666664 24567788776 778899888 8999
Q ss_pred HHHHHhcCCcEEEeccccCccccCccccccccCCCcceeee--hhccCCCccchheeEeCHHHHhhh
Q 005009 647 VKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 647 r~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtl--gK~LggG~~Plsavl~~~~i~~~~ 711 (719)
.++|++||+++++|.+|+ +|.. .+-.+.+ .+|++++ -| ++|. ..+|++.++++..+.+
T Consensus 161 ~~~~~~~g~~~~vD~a~~-~g~~--~~~~~~~--~~D~~~~s~hK-~~gp-~G~g~l~v~~~~~~~l 220 (364)
T PLN02651 161 GELCREKKVLFHTDAAQA-VGKI--PVDVDDL--GVDLMSISGHK-IYGP-KGVGALYVRRRPRVRL 220 (364)
T ss_pred HHHHHHcCCEEEEEcchh-hCCc--ccCcccC--CCCEEEechhh-hCCC-CceEEEEEcCCCCCCC
Confidence 999999999999999996 3321 2333333 4698865 46 6432 3478888898765543
|
|
| >CHL00175 minD septum-site determining protein; Validated | Back alignment and domain information |
|---|
Probab=98.31 E-value=6.5e-06 Score=87.45 Aligned_cols=87 Identities=14% Similarity=0.141 Sum_probs=64.2
Q ss_pred CcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCC--------
Q 005009 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV-------- 292 (719)
Q Consensus 221 ~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~~-------- 292 (719)
+|+|||.+..|+... ........+ .+|+|+.....++.++...++.++..+....++|+|++...
T Consensus 127 yD~VIiDtpp~~~~~------~~~~l~~aD-~viiV~~p~~~si~~~~~~~~~l~~~~~~~~~lvvN~~~~~~~~~~~~~ 199 (281)
T CHL00175 127 YDYILIDCPAGIDVG------FINAIAPAQ-EAIVVTTPEITAIRDADRVAGLLEANGIYNVKLLVNRVRPDMIQANDMM 199 (281)
T ss_pred CCEEEEeCCCCCCHH------HHHHHHhcC-eeEEEcCCChHHHHHHHHHHHHHHHcCCCceEEEEeccChhhhhhhccc
Confidence 999999998764221 222223333 68889999999999999999999988877789999998321
Q ss_pred CHHHHHHhhcCCCcEEe-cCCCCCC
Q 005009 293 NEVPLMSYLRNRVPVLV-LPPLPQD 316 (719)
Q Consensus 293 ~~~~l~~~~~~~~pvlg-lP~~~~~ 316 (719)
....+++++ +.|+++ ||+.+..
T Consensus 200 ~~~~l~~~~--~~~~~~~Ip~d~~v 222 (281)
T CHL00175 200 SVRDVQEML--GIPLLGAIPEDENV 222 (281)
T ss_pred cHHHHHHHh--CCCeEEEccCCHhH
Confidence 234466666 899999 9987754
|
|
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=98.31 E-value=8.8e-06 Score=89.33 Aligned_cols=78 Identities=13% Similarity=0.066 Sum_probs=54.4
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeeh--hccCCCcc
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVI 696 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~LggG~~ 696 (719)
++.+|++... +...|.+.+ +++|.++|+++|+++|+||+|+ +|... +..+. ..+|+++++ |.++|. .
T Consensus 137 ~~~~v~~~~~-~n~tG~~~~----~~~i~~l~~~~~~~livD~a~~-~g~~~--~~~~~--~~~D~~~~s~~K~l~~p-~ 205 (376)
T TIGR01977 137 NTKLIVVSHA-SNVTGTILP----IEEIGELAQENGIFFILDAAQT-AGVIP--IDMTE--LAIDMLAFTGHKGLLGP-Q 205 (376)
T ss_pred CCeEEEEECC-CCCccccCC----HHHHHHHHHHcCCEEEEEhhhc-cCccC--CCchh--cCCCEEEecccccccCC-C
Confidence 4566767665 788888887 8899999999999999999995 55432 11222 357987655 988763 1
Q ss_pred chheeEeCHHH
Q 005009 697 PLAATLATNAV 707 (719)
Q Consensus 697 Plsavl~~~~i 707 (719)
-.|+++++++.
T Consensus 206 g~g~l~~~~~~ 216 (376)
T TIGR01977 206 GTGGLYIREGI 216 (376)
T ss_pred CceEEEEcCCc
Confidence 24566666653
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.2e-05 Score=89.56 Aligned_cols=102 Identities=10% Similarity=0.075 Sum_probs=64.2
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccccc----c
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD----L 677 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e----~ 677 (719)
+.|++.+.+ .+++++.+|+++.- ..-.|-.+.+.+.+++|+++|++||++||.|+.+..- +.+|..+ +
T Consensus 164 e~Le~~i~~----~~~~~tk~Ivl~~p-~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e---~a~f~~~~e~g~ 235 (460)
T PRK13238 164 EKLEALIEE----VGAENVPFIVMTIT-NNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAE---NAYFIKQREPGY 235 (460)
T ss_pred HHHHHHHhh----cCCCceeEEEEecC-CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhh---hhhhhhhccccc
Confidence 667777764 33467889998854 4444434557899999999999999999999988531 1112110 0
Q ss_pred cC-----------CCcceeeehhccCCCccchheeEe-C-HHHHhhhc
Q 005009 678 LG-----------CVPDIACYGKLLTGGVIPLAATLA-T-NAVFDSFV 712 (719)
Q Consensus 678 ~g-----------v~PDIvtlgK~LggG~~Plsavl~-~-~~i~~~~~ 712 (719)
.+ --.|+++++ +--.|+.|.|++++ + +++++.+.
T Consensus 236 ~~~si~~i~~~~~s~~D~~~~S-g~K~g~~~~GG~i~~~d~~l~~~~~ 282 (460)
T PRK13238 236 KDKSIKEIAREMFSYADGLTMS-AKKDAMVNIGGLLCFRDEDLFTECR 282 (460)
T ss_pred cCCCHHHHhhhhcccCcEEEEe-cccCCCCcceeEEEcChHHHHHHhh
Confidence 11 126777665 33234457666666 3 46766553
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.5e-05 Score=86.98 Aligned_cols=104 Identities=17% Similarity=0.189 Sum_probs=71.4
Q ss_pred HHHHHHHhcCCCCCCCC-cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccC-c-ccc-ccc
Q 005009 602 SYISQNLLQNPGLKVSG-CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG-V-ETT-ADL 677 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~-~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG-~-~~a-~e~ 677 (719)
+.+++.+++. .... ++.++++... +.-.|... +.+.+++|.++|++||+++|+||++..+ ..+ . ++. ...
T Consensus 133 ~~l~~~l~~~---~~~~~~~~~v~~~~p-~nPtG~~~-~~~~l~~l~~~~~~~~~~ii~De~y~~~-~~~~~~~~~~~~~ 206 (363)
T PF00155_consen 133 EALEEALDEL---PSKGPRPKAVLICNP-NNPTGSVL-SLEELRELAELAREYNIIIIVDEAYSDL-IFGDPDFGPIRSL 206 (363)
T ss_dssp HHHHHHHHTS---HTTTETEEEEEEESS-BTTTTBB---HHHHHHHHHHHHHTTSEEEEEETTTTG-BSSSSHTHHHHGH
T ss_pred cccccccccc---cccccccceeeeccc-cccccccc-ccccccchhhhhcccccceeeeeceecc-ccCCCccCccccc
Confidence 5677777752 1122 3567777665 66677654 7888999999999999999999999876 334 2 111 222
Q ss_pred cCCCcc-ee--eehhccC-CCccchheeEeCHHHHhhhc
Q 005009 678 LGCVPD-IA--CYGKLLT-GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 678 ~gv~PD-Iv--tlgK~Lg-gG~~Plsavl~~~~i~~~~~ 712 (719)
..-.++ |+ +++|.+| -| +.+|.+++++++.+.+.
T Consensus 207 ~~~~~~vi~~~S~SK~~g~~G-lRvG~i~~~~~~~~~l~ 244 (363)
T PF00155_consen 207 LDEDDNVIVVGSLSKSFGLPG-LRVGYIVAPPELIERLR 244 (363)
T ss_dssp HTTTSTEEEEEESTTTTTSGG-GTEEEEEEEHHHHHHHH
T ss_pred ccccccceeeeeccccccccc-cccccccchhhhhhhhh
Confidence 233444 33 6899998 58 68899999999888764
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.3e-05 Score=88.98 Aligned_cols=197 Identities=14% Similarity=0.134 Sum_probs=113.1
Q ss_pred CHHHHHHHHHhhhhccccc--C-CCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhcccccccc
Q 005009 418 QIELARDMGYTAARFGHVM--F-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVD 494 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~--~-~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~ 494 (719)
++++++|+.+.+..+.... . .+........+.++|+++.+. +.+++++||+.|+..++... ..
T Consensus 94 ~~~vieAv~~~~~~y~~l~~~l~~g~~g~r~~~le~~lA~l~ga---e~alvv~sg~aAi~l~l~~l------~~----- 159 (454)
T TIGR00474 94 AEEAIEAVTDAARGYSNLEYDLETGKRGSRYSHVEGLLCELTGA---EDALVVNNNAAAVLLALNTL------AK----- 159 (454)
T ss_pred CHHHHHHHHHHHhcccchhccccccccchHHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHh------CC-----
Confidence 7999999999888654211 0 112235567889999999874 46778999999998888432 11
Q ss_pred ccCCCccccCcceEEEEEeCCc--ccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcc
Q 005009 495 FLGKDTTEKCIELKVLALKGSY--HGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKI 572 (719)
Q Consensus 495 ~~~~~~~~~~~r~kII~~~~sy--HG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~ 572 (719)
...||..++.+ +|.+. ++... .+. . |.....++
T Consensus 160 -----------GdeVIvs~~e~v~~ggs~---~i~~~--~~~---------~-------------G~~~~~v~------- 194 (454)
T TIGR00474 160 -----------GKEVIVSRGELVEIGGSF---RIPDV--MEQ---------S-------------GAKLVEVG------- 194 (454)
T ss_pred -----------cCEEEECCChhhhhcchh---hHHHH--HHH---------c-------------CCEEEEeC-------
Confidence 23577766654 23211 11000 000 0 00000000
Q ss_pred cccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccc-cccCCc--cccCCHHHHHHHHHH
Q 005009 573 VEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPV-VHAAGG--MHMVDPLFQRILVKE 649 (719)
Q Consensus 573 ~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPV-iqg~gG--~~~pp~~fl~~Lr~L 649 (719)
.++. . + .+.+++++. .+.++|+++-. .....| ...+ +++|.++
T Consensus 195 -------~~~~-------~---~-----l~dle~aI~--------~~T~lv~~~h~sN~~~~G~~~~~d----l~~I~~l 240 (454)
T TIGR00474 195 -------TTNR-------T---H-----LKDYEDAIT--------ENTALLLKVHTSNYRIVGFTEEVS----IAELVAL 240 (454)
T ss_pred -------CCCC-------C---C-----HHHHHHhcC--------cCCEEEEEEccCcccccCCCCCCC----HHHHHHH
Confidence 0110 0 0 244555553 24566666653 022234 3555 9999999
Q ss_pred HHhcCCcEEEeccccCccccCcc--cc-------ccccCCCcceeeeh--hccCCCccchheeEeCHHHHhhhc
Q 005009 650 CQNRKIPVIFDEVFTGFWRLGVE--TT-------ADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 650 c~k~gilLI~DEVqTGfGRtG~~--~a-------~e~~gv~PDIvtlg--K~LggG~~Plsavl~~~~i~~~~~ 712 (719)
|++||+++|+|- |+|-.|.. |+ .+-.....|++++| |.|||-. .|+++++++..+.+.
T Consensus 241 a~~~g~~vivD~---~sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp~--~G~i~g~~~~i~~l~ 309 (454)
T TIGR00474 241 GREHGLPVMEDL---GSGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGPQ--AGIIVGKKELIERLK 309 (454)
T ss_pred HHHcCCeEEEEC---CCcccccchhccCCCCcccccHhHcCCCEEEecCccccCCCe--EEEEEECHHHHHhhh
Confidence 999999999995 34433331 11 11122357999999 9998752 567889988876543
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.2e-05 Score=87.94 Aligned_cols=84 Identities=13% Similarity=0.136 Sum_probs=57.4
Q ss_pred EEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccc-cccCCCcceeeehhccC-CCccchh
Q 005009 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA-DLLGCVPDIACYGKLLT-GGVIPLA 699 (719)
Q Consensus 622 AvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~-e~~gv~PDIvtlgK~Lg-gG~~Pls 699 (719)
.++..| +...|.+.+ .+++.++|+++|+++|+||++.+|. .+..-.. ..++-.--+-+|+|.+| .| +.+|
T Consensus 162 v~~~~p--~nptG~~~~----~~~l~~l~~~~~~~li~De~y~~~~-~~~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG 233 (361)
T PRK00950 162 IFLCTP--NNPTGNLIP----EEDIRKILESTDALVFVDEAYVEFA-EYDYTPLALEYDNLIIGRTFSKVFGLAG-LRIG 233 (361)
T ss_pred EEEeCC--CCCCCCCcC----HHHHHHHHHHCCcEEEEECchhhhC-ccchHHHHHhcCCEEEEEeehHhhcCch-hhcc
Confidence 344456 566788777 5688999999999999999998774 1221111 11110011228999998 68 7889
Q ss_pred eeEeCHHHHhhhcC
Q 005009 700 ATLATNAVFDSFVG 713 (719)
Q Consensus 700 avl~~~~i~~~~~~ 713 (719)
.+++++++++.+..
T Consensus 234 ~~~~~~~~~~~~~~ 247 (361)
T PRK00950 234 YGFVPEWLIDYYMR 247 (361)
T ss_pred hhcCCHHHHHHHHH
Confidence 99999999877643
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=98.28 E-value=5.4e-06 Score=92.14 Aligned_cols=170 Identities=15% Similarity=0.108 Sum_probs=107.0
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
..++....|+++|+++.+. +.+++++||++|+..++.... +.| ..||..+..||+.
T Consensus 47 ~gnPt~~~lE~~lA~l~g~---~~~~~~~sG~~Ai~~al~all-----~~G----------------D~Vl~~~~~y~~t 102 (377)
T TIGR01324 47 RGTLTHFALQDAMCELEGG---AGCYLYPSGLAAVTNSILAFV-----KAG----------------DHVLMVDSAYEPT 102 (377)
T ss_pred CCCccHHHHHHHHHHHhCC---CcEEEECcHHHHHHHHHHHhc-----CCC----------------CEEEEcCCCcHHH
Confidence 4467778999999998773 678999999999999987541 112 3688888888873
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
....-... .. .+. . +.+.+. .+
T Consensus 103 ~~~~~~~~--~~------------~gi----------------~--------------v~~~d~-------~~------- 124 (377)
T TIGR01324 103 RYFCDIVL--KR------------MGV----------------D--------------ITYYDP-------LI------- 124 (377)
T ss_pred HHHHHHHH--Hh------------cCc----------------E--------------EEEECC-------CC-------
Confidence 21100000 00 000 0 000110 00
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccC
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~g 679 (719)
.+.+++.+. .+..+|++|.. ....|...+ +++|.++|+++|+++|+||++. +|-.+... .
T Consensus 125 -~e~l~~~i~--------~~tklV~lesp-~Np~g~~~d----l~~I~~la~~~g~~livD~t~a-~g~~~~pl-----~ 184 (377)
T TIGR01324 125 -GEDIATLIQ--------PNTKVLFLEAP-SSITFEIQD----IPAIAKAARNPGIVIMIDNTWA-AGLLFKPL-----E 184 (377)
T ss_pred -HHHHHHhcC--------CCceEEEEECC-CCCCCcHHH----HHHHHHHHHHcCCEEEEECCCc-cccccCcc-----c
Confidence 034555553 24668999976 666676655 9999999999999999999995 33333322 2
Q ss_pred CCcceeee--hhccCCC-ccchheeEeCHHHHhhh
Q 005009 680 CVPDIACY--GKLLTGG-VIPLAATLATNAVFDSF 711 (719)
Q Consensus 680 v~PDIvtl--gK~LggG-~~Plsavl~~~~i~~~~ 711 (719)
...|+++. .|.++|- =.=.|+++++++.++.+
T Consensus 185 ~gaDivv~S~tK~l~G~~d~~gG~v~~~~~~~~~l 219 (377)
T TIGR01324 185 HGVDISIQAGTKYLVGHSDIMIGTVVANARTWDQL 219 (377)
T ss_pred cCceEEEecCceeccCCCCceEEEEEeCHHHHHHH
Confidence 34688864 9999861 02246677887766544
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >TIGR01968 minD_bact septum site-determining protein MinD | Back alignment and domain information |
|---|
Probab=98.28 E-value=7.8e-06 Score=85.10 Aligned_cols=101 Identities=11% Similarity=0.176 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHH
Q 005009 193 GDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYE 272 (719)
Q Consensus 193 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~ 272 (719)
..+.+.+.+..+.+. +|+|||++.+|+..+. .......+ -||+|+.....++.++...++
T Consensus 97 ~~~~l~~~l~~l~~~-------------~D~viiD~p~~~~~~~------~~~l~~aD-~viiv~~~~~~s~~~~~~~~~ 156 (261)
T TIGR01968 97 TPEQMKKLVNELKEE-------------FDYVIIDCPAGIESGF------RNAVAPAD-EAIVVTTPEVSAVRDADRVIG 156 (261)
T ss_pred CHHHHHHHHHHHHHh-------------CCEEEEeCCCCcCHHH------HHHHHhCC-eEEEEcCCCcHHHHHHHHHHH
Confidence 344555555555443 9999999987764321 12222222 488888899999999999999
Q ss_pred HHHhCCCcEEEEEEccCCC----C----CHHHHHHhhcCCCcEEe-cCCCCC
Q 005009 273 SLKLRGYDVVAVVFEDHGL----V----NEVPLMSYLRNRVPVLV-LPPLPQ 315 (719)
Q Consensus 273 ~l~~~~~~v~gvi~N~~~~----~----~~~~l~~~~~~~~pvlg-lP~~~~ 315 (719)
.++..+....++|+|++.. . ..+.+.+.+ +.|+++ ||....
T Consensus 157 ~l~~~~~~~~~iviN~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Ip~~~~ 206 (261)
T TIGR01968 157 LLEAKGIEKIHLIVNRLRPEMVKKGDMLSVDDVLEIL--SIPLIGVIPEDEA 206 (261)
T ss_pred HHHHcCCCceEEEEeCcCchhcccccccCHHHHHHHh--CCceeEEccCCHH
Confidence 9988776678999999821 1 233455555 789999 888764
|
This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model. |
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=1e-05 Score=88.67 Aligned_cols=210 Identities=10% Similarity=0.062 Sum_probs=121.2
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlK 479 (719)
.++|+.++.. .+|. +|.+.+|+.++++.+.+.. .....+|.+.+++..+-. -+.+++++++++|...+++
T Consensus 30 ~~i~l~~n~~--~~~~--~~~v~~a~~~~~~~~~~~p-----~~g~~~lr~~ia~~~~~~-~~~i~~t~G~~~~l~~~~~ 99 (359)
T PRK03158 30 KIVKLASNEN--PYGP--SPKVKEAIAAHLDELALYP-----DGYAPELRTKVAKHLGVD-EEQLLFGAGLDEVIQMISR 99 (359)
T ss_pred ceEEecCCCC--CCCC--CHHHHHHHHHHHHHhhcCC-----CCcHHHHHHHHHHHhCCC-HHHEEECCCHHHHHHHHHH
Confidence 5788877543 3553 7999999998887654322 112345556666655422 3579999999999887766
Q ss_pred HHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcc
Q 005009 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (719)
Q Consensus 480 lA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (719)
... +. ...|+...-+|++....+. ..|.. .
T Consensus 100 ~~~-----~~----------------gd~v~~~~p~y~~~~~~~~-~~g~~----------------------------~ 129 (359)
T PRK03158 100 ALL-----NP----------------GTNTVMAEPTFSQYRHNAI-IEGAE----------------------------V 129 (359)
T ss_pred HHh-----CC----------------CCEEEEcCCCHHHHHHHHH-HcCCe----------------------------E
Confidence 541 11 2368888888887322111 11100 0
Q ss_pred eeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCC
Q 005009 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (719)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (719)
..++..+ + ..| .+.+++.+. .++.++++... +.-.|.+.+.
T Consensus 130 ~~~~~~~-~---------------------~~d--------~~~l~~~~~--------~~~~~v~i~~p-~NPtG~~~~~ 170 (359)
T PRK03158 130 REVPLKD-G---------------------GHD--------LEAMLKAID--------EQTKIVWICNP-NNPTGTYVNH 170 (359)
T ss_pred EEEecCC-C---------------------CcC--------HHHHHHhcC--------CCCCEEEEeCC-CCCCCCCCCH
Confidence 0111100 0 000 234444442 23445565544 7888988863
Q ss_pred HHHHHHHHHHHHh--cCCcEEEeccccCccccCc-cccccccCC-Cccee--eehhccC-CCccchheeEeCHHHHhhhc
Q 005009 640 PLFQRILVKECQN--RKIPVIFDEVFTGFWRLGV-ETTADLLGC-VPDIA--CYGKLLT-GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 640 ~~fl~~Lr~Lc~k--~gilLI~DEVqTGfGRtG~-~~a~e~~gv-~PDIv--tlgK~Lg-gG~~Plsavl~~~~i~~~~~ 712 (719)
+++.++++. +|+++|+||++..|-.-+. .......+- ...++ +|+|.+| .| +.+|.+++++++.+.+.
T Consensus 171 ----~~l~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~~v~~~~~~~~~~ 245 (359)
T PRK03158 171 ----EELLSFLESVPSHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAA-LRVGYGIASEELIEKLN 245 (359)
T ss_pred ----HHHHHHHHhCCCCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEechHhhcCcc-hhhehhcCCHHHHHHHH
Confidence 344555544 6999999999976522111 011111111 12344 8999998 68 79999999999988775
Q ss_pred C
Q 005009 713 G 713 (719)
Q Consensus 713 ~ 713 (719)
.
T Consensus 246 ~ 246 (359)
T PRK03158 246 I 246 (359)
T ss_pred H
Confidence 3
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.26 E-value=6.2e-06 Score=93.04 Aligned_cols=163 Identities=13% Similarity=0.121 Sum_probs=106.7
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
..++...+|+++|+++.+. +.+++++||++|+..+++... +.| .+||.....|+|
T Consensus 55 ~~~pt~~~Le~~lA~l~g~---~~~l~~ssG~~Ai~~al~al~-----~~G----------------d~Vl~~~~~Y~~- 109 (425)
T PRK06084 55 IMNPTNDVLEQRVAALEGG---VGALAVASGMAAITYAIQTIA-----EAG----------------DNIVSVAKLYGG- 109 (425)
T ss_pred CCCchHHHHHHHHHHHhCC---CceeEehhHHHHHHHHHHHHh-----CCC----------------CEEEEeCCCcch-
Confidence 4466778999999998863 567899999999999998662 112 368888888887
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
+...+... ... .+. . + ..+ + ..|
T Consensus 110 t~~~~~~~----l~~---------~gi----~-v------~~~--d--------------~~d----------------- 132 (425)
T PRK06084 110 TYNLLAHT----LPR---------IGI----E-T------RFA--A--------------HDD----------------- 132 (425)
T ss_pred HHHHHHHh----ccc---------cee----E-E------EEE--C--------------CCC-----------------
Confidence 33322210 000 000 0 0 000 0 111
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccC
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~g 679 (719)
.+.+++.+. .++.+|++|.. +.-.|.+.+ +++|.++|++||+++|+||++. .+-.. ....
T Consensus 133 -~e~le~ai~--------~~tklV~lesp-~NPtG~v~d----l~~I~~la~~~~i~vVvD~a~a-~~~~~-----~p~~ 192 (425)
T PRK06084 133 -IAALEALID--------ERTKAVFCESI-GNPAGNIID----IQALADAAHRHGVPLIVDNTVA-TPVLC-----RPFE 192 (425)
T ss_pred -HHHHHHHhc--------cCCcEEEEeCC-CCCCCeecC----HHHHHHHHHHcCCEEEEECCCc-ccccC-----Chhh
Confidence 245666664 24678999986 788888776 8999999999999999999995 22222 2223
Q ss_pred CCccee--eehhccCCCccchheeEeC
Q 005009 680 CVPDIA--CYGKLLTGGVIPLAATLAT 704 (719)
Q Consensus 680 v~PDIv--tlgK~LggG~~Plsavl~~ 704 (719)
.-+||+ .+.|.++|.--.+|++++.
T Consensus 193 ~gaDivv~S~tK~l~G~g~~~gG~v~~ 219 (425)
T PRK06084 193 HGADIVVHSLTKYIGGHGTSIGGIVVD 219 (425)
T ss_pred cCCCEEEECchhcccccccceeEEEEe
Confidence 457887 6899998722567766664
|
|
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.9e-05 Score=86.37 Aligned_cols=213 Identities=9% Similarity=0.033 Sum_probs=124.2
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccc-cCCC-----CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHV-MFPE-----NVYEPALECAELLLQGVGKGWASRAYFSDNGSTA 473 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~-~~~~-----~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA 473 (719)
.|||-. ..|-- .+.+.+|+.+.+...... .... ...+...++-++|+++++...-+.|.|++|++++
T Consensus 21 ~yld~a------~~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~~~~~t~~ 93 (401)
T PRK10874 21 VYLDSA------ATALK-PQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNIVWTRGTTES 93 (401)
T ss_pred EEEeCC------cccCC-CHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCHHHH
Confidence 688844 45666 889999998877643211 1000 0123355666778887774224679999999999
Q ss_pred HHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcc
Q 005009 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (719)
Q Consensus 474 ~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~ 553 (719)
+..+++... .-.-+ ...+||..+..|++.......+... . |.
T Consensus 94 i~~~~~~~~-~~~~~----------------~gd~vl~~~~~~~s~~~~~~~~~~~---~-----------g~------- 135 (401)
T PRK10874 94 INLVAQSYA-RPRLQ----------------PGDEIIVSEAEHHANLVPWLMVAQQ---T-----------GA------- 135 (401)
T ss_pred HHHHHHHhh-hccCC----------------CcCEEEECCcchHHHHHHHHHHHHH---h-----------CC-------
Confidence 998887651 10001 1247888888777632111111100 0 00
Q ss_pred cccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 005009 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (719)
Q Consensus 554 ~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~g 633 (719)
....++.+..+ ..| .+.+++.+. .+...|++.-+ ....
T Consensus 136 ----~v~~v~~~~~~-----------~~d------------------~~~l~~~i~--------~~t~lv~i~~~-~n~t 173 (401)
T PRK10874 136 ----KVVKLPLGADR-----------LPD------------------VDLLPELIT--------PRTRILALGQM-SNVT 173 (401)
T ss_pred ----EEEEEecCCCC-----------cCC------------------HHHHHHhcC--------cCcEEEEEeCC-cccc
Confidence 00111111000 000 245666653 13345555554 6777
Q ss_pred ccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeeh--hccC-CCccchheeEeCHHHHhh
Q 005009 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLT-GGVIPLAATLATNAVFDS 710 (719)
Q Consensus 634 G~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~Lg-gG~~Plsavl~~~~i~~~ 710 (719)
|.+.+ +++|.++|+++|+++|+||+|. +|..- . +.....+|+++++ |.+| .| +|.+.+++++.+.
T Consensus 174 G~~~~----~~~i~~l~~~~g~~~ivD~a~~-~g~~~--~--~~~~~~~d~~~~s~~K~~gp~G---~G~l~~~~~~~~~ 241 (401)
T PRK10874 174 GGCPD----LARAITLAHQAGMVVMVDGAQG-AVHFP--A--DVQALDIDFYAFSGHKLYGPTG---IGVLYGKSELLEA 241 (401)
T ss_pred cCcCC----HHHHHHHHHHcCCEEEEECCcc-ccccc--C--CchhcCCCEEEEecccccCCCc---cEEEEEchHHHhc
Confidence 88877 8999999999999999999995 43321 1 2122358988776 9654 24 5788899998876
Q ss_pred h
Q 005009 711 F 711 (719)
Q Consensus 711 ~ 711 (719)
+
T Consensus 242 ~ 242 (401)
T PRK10874 242 M 242 (401)
T ss_pred C
Confidence 5
|
|
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.4e-05 Score=85.49 Aligned_cols=92 Identities=9% Similarity=-0.010 Sum_probs=57.0
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEE-ccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC
Q 005009 602 SYISQNLLQNPGLKVSGCIGALII-EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIv-EPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv 680 (719)
+.+++.+.+ .+..+|++ .+. . |...+ +++|.++|++||+++|+||+|. +|-++........+
T Consensus 155 ~~l~~~i~~-------~~~k~v~~~~~~-~---~~~~~----~~~I~~la~~~~~~livD~a~~-~g~~~~g~~~~~~~- 217 (416)
T PRK00011 155 DEVEKLALE-------HKPKLIIAGASA-Y---SRPID----FKRFREIADEVGAYLMVDMAHI-AGLVAAGVHPSPVP- 217 (416)
T ss_pred HHHHHHHHh-------cCCCEEEECCCc-C---CCccC----HHHHHHHHHHcCCEEEEECcch-hcccccCccCCCCC-
Confidence 556666652 12334444 554 3 33334 8999999999999999999985 33333211011122
Q ss_pred Cccee--eehhccCCCccchheeEeC-HHHHhhhc
Q 005009 681 VPDIA--CYGKLLTGGVIPLAATLAT-NAVFDSFV 712 (719)
Q Consensus 681 ~PDIv--tlgK~LggG~~Plsavl~~-~~i~~~~~ 712 (719)
..|++ +++|+++| .+.|+++++ +++.+.+.
T Consensus 218 ~~di~~~S~~K~l~g--~~gg~i~~~~~~~~~~l~ 250 (416)
T PRK00011 218 HADVVTTTTHKTLRG--PRGGLILTNDEELAKKIN 250 (416)
T ss_pred CCcEEEecCCcCCCC--CCceEEEeCCHHHHHHHH
Confidence 35776 68999954 356778885 67777654
|
|
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.6e-05 Score=87.69 Aligned_cols=196 Identities=15% Similarity=0.146 Sum_probs=113.1
Q ss_pred CHHHHHHHHHhhhhccccc--C-CCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhcccccccc
Q 005009 418 QIELARDMGYTAARFGHVM--F-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVD 494 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~--~-~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~ 494 (719)
.+++.+|+.+.+..+.... . .+...+....+.+.|+++.+. +.++++|||+.|+..++... ..
T Consensus 99 ~~~v~eav~~~~~~~~~le~~l~~g~~g~r~~~~e~~lA~l~Ga---e~a~vv~sgtaAl~l~l~~l------~~----- 164 (464)
T PRK04311 99 SEAAIEAVTEAARGYSNLEYDLATGKRGSRDRALAALLCALTGA---EDALVVNNNAAAVLLALNAL------AA----- 164 (464)
T ss_pred CHHHHHHHHHHHhcccccccchhhcccchHHHHHHHHHHHHhCC---CeEEEECCHHHHHHHHHHHh------CC-----
Confidence 6899999998887654211 0 011234456888999998873 57889999999998888543 11
Q ss_pred ccCCCccccCcceEEEEEeCC-cc-cCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcc
Q 005009 495 FLGKDTTEKCIELKVLALKGS-YH-GDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKI 572 (719)
Q Consensus 495 ~~~~~~~~~~~r~kII~~~~s-yH-G~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~ 572 (719)
...||..++. || |.+.. +... .+ .. |.....++
T Consensus 165 -----------GdeVIvs~~e~~~~ggs~~---i~~~--~~---------~~-------------G~~l~~v~------- 199 (464)
T PRK04311 165 -----------GKEVIVSRGELVEIGGAFR---IPDV--MR---------QA-------------GARLVEVG------- 199 (464)
T ss_pred -----------CCEEEEcchhhhhcCcchh---hHHH--HH---------HC-------------CcEEEEEC-------
Confidence 1356666653 33 32211 1000 00 00 00000000
Q ss_pred cccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccccc--CCc--cccCCHHHHHHHHH
Q 005009 573 VEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHA--AGG--MHMVDPLFQRILVK 648 (719)
Q Consensus 573 ~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg--~gG--~~~pp~~fl~~Lr~ 648 (719)
+.+. . . .+.+++.|. ++.++|+++-. .. .-| ...+ +++|.+
T Consensus 200 -------~~~~-------t---~-----~~dle~aI~--------~~TklV~~vh~-sN~~i~G~~~~~d----l~eI~~ 244 (464)
T PRK04311 200 -------TTNR-------T---H-----LRDYEQAIN--------ENTALLLKVHT-SNYRIEGFTKEVS----LAELAA 244 (464)
T ss_pred -------CCCC-------C---C-----HHHHHHhcC--------ccCeEEEEEcC-CCccccccCCcCC----HHHHHH
Confidence 0110 0 0 244566664 24567777754 22 123 3445 999999
Q ss_pred HHHhcCCcEEEeccccCccccCc---c------ccccccCCCcceeeeh--hccCCCccchheeEeCHHHHhhhc
Q 005009 649 ECQNRKIPVIFDEVFTGFWRLGV---E------TTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 649 Lc~k~gilLI~DEVqTGfGRtG~---~------~a~e~~gv~PDIvtlg--K~LggG~~Plsavl~~~~i~~~~~ 712 (719)
+|++||+++|+|.. .|-.|. + ...+....-.|+++++ |.|||. . .|++++++++.+.+.
T Consensus 245 lak~~gi~vivD~g---sG~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp-~-~G~i~g~~~li~~l~ 314 (464)
T PRK04311 245 LGKEHGLPVVYDLG---SGSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGP-Q-AGIIVGKKELIARLK 314 (464)
T ss_pred HHHHcCCeEEEECC---CcccccchhccCCCCCchhhHHhcCCcEEEecCcccccCC-c-eEEEEEcHHHHHHHh
Confidence 99999999999993 333332 1 1111122357999998 999876 2 567889999887664
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=9e-05 Score=82.22 Aligned_cols=204 Identities=14% Similarity=0.095 Sum_probs=121.8
Q ss_pred CHHHHHHHHHhhhhc--ccccCCCCCChHHHHHHHHHHhccCCC-CCCeEEEeCChHHHHHHHHHHHHHHhhcccccccc
Q 005009 418 QIELARDMGYTAARF--GHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVD 494 (719)
Q Consensus 418 hP~V~~Av~~q~~~~--~~~~~~~~~~~~~~~Lae~L~~~~~~~-~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~ 494 (719)
.+.+.+++.+.+... .+.. .....+....+++.+.+..+.+ ..+.+++++++++|...++.... ..
T Consensus 47 ~~~v~~a~~~~~~~~~~~Y~~-~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~-----~~----- 115 (387)
T PRK08960 47 AEPIVAAGQAALAAGHTRYTA-ARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLLV-----DP----- 115 (387)
T ss_pred CHHHHHHHHHHHhcCCCccCC-CCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHHHHHHhc-----CC-----
Confidence 678999988877642 1211 1122344455666665432211 13679999999999998886551 11
Q ss_pred ccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccc
Q 005009 495 FLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVE 574 (719)
Q Consensus 495 ~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~ 574 (719)
...|+..+-+|.+...... ..+.. ...++....
T Consensus 116 -----------gd~vlv~~p~y~~~~~~~~-~~g~~----------------------------~~~v~~~~~------- 148 (387)
T PRK08960 116 -----------GKHWLLADPGYPCNRHFLR-LVEGA----------------------------AQLVPVGPD------- 148 (387)
T ss_pred -----------CCEEEEcCCCCcchHHHHH-hcCCe----------------------------EEEEecCcc-------
Confidence 2367877777766432211 11100 011111100
Q ss_pred cccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcC
Q 005009 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK 654 (719)
Q Consensus 575 ~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~g 654 (719)
++ + .-| .+.+++.+. ......+|.-| +.-.|... +.+-+++|.++|++||
T Consensus 149 ------~~----~--~~d--------~~~l~~~~~-------~~~~~i~i~~p--~NPtG~~~-~~~~~~~l~~~~~~~~ 198 (387)
T PRK08960 149 ------SR----Y--QLT--------PALVERHWN-------ADTVGALVASP--ANPTGTLL-SRDELAALSQALRARG 198 (387)
T ss_pred ------cC----C--CCC--------HHHHHHHhC-------ccceEEEEECC--CCCCCcCc-CHHHHHHHHHHHHHcC
Confidence 00 0 001 244555554 23456677777 45567655 6888999999999999
Q ss_pred CcEEEeccccCccccCccccccccCCCccee---eehhccC-CCccchheeEeCHHHHhhhc
Q 005009 655 IPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 655 ilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv---tlgK~Lg-gG~~Plsavl~~~~i~~~~~ 712 (719)
+++|+||+...|--.+... ....+.++++ +++|.+| .| +-+|.+++++++.+.+.
T Consensus 199 ~~li~De~Y~~~~~~~~~~--~~~~~~~~vi~~~S~SK~~g~~G-lRiG~~~~~~~~~~~~~ 257 (387)
T PRK08960 199 GHLVVDEIYHGLTYGVDAA--SVLEVDDDAFVLNSFSKYFGMTG-WRLGWLVAPPAAVPELE 257 (387)
T ss_pred CEEEEEccccccccCCCCC--ChhhccCCEEEEeecccccCCcc-cEEEEEEcCHHHHHHHH
Confidence 9999999998763222221 1233456766 4999997 78 79999999999887664
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.1e-05 Score=84.87 Aligned_cols=88 Identities=17% Similarity=0.218 Sum_probs=60.3
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc-cccccc--CCC-ccee--eehhccC-C
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLL--GCV-PDIA--CYGKLLT-G 693 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~-~a~e~~--gv~-PDIv--tlgK~Lg-g 693 (719)
+.++..| +.-.|.+. +.+-+++|.++|++||+++|+||++..+...|.. ...... +.. .+++ +++|.+| .
T Consensus 167 ~v~~~~p--~NPtG~~~-~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~ 243 (393)
T PRK05764 167 ALILNSP--SNPTGAVY-SPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMT 243 (393)
T ss_pred EEEEECC--CCCCCccc-CHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccccCc
Confidence 3455556 44456654 5788999999999999999999999765322321 111111 221 2333 5999998 7
Q ss_pred CccchheeEeCHHHHhhhc
Q 005009 694 GVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~ 712 (719)
| +.+|++++++++.+.+.
T Consensus 244 G-~RiG~i~~~~~~~~~~~ 261 (393)
T PRK05764 244 G-WRLGYAAGPKELIKAMS 261 (393)
T ss_pred c-ceeEEEecCHHHHHHHH
Confidence 8 68999999999888764
|
|
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.9e-05 Score=86.58 Aligned_cols=72 Identities=15% Similarity=0.092 Sum_probs=53.0
Q ss_pred cCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee--eehhccCCCccchheeEeCHHHH
Q 005009 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVF 708 (719)
Q Consensus 631 g~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlgK~LggG~~Plsavl~~~~i~ 708 (719)
...|.+.+ +++|.++|++||+++|+|.+|+ +|... +....+ .+|++ ++.|.|+|+ .-+|.++++++..
T Consensus 140 ~~tG~~~~----i~~I~~l~~~~g~~livD~~~~-~g~~~--~~~~~~--~~D~~~~s~~K~l~~p-~G~G~l~~~~~~~ 209 (363)
T TIGR02326 140 TTTGILNP----IEAVAKLAHRHGKVTIVDAMSS-FGGIP--IDIAEL--HIDYLISSANKCIQGV-PGFGFVIARQAEL 209 (363)
T ss_pred CCccccCc----HHHHHHHHHHcCCEEEEEcccc-ccCcc--cchhhc--CccEEEecCccccccC-CcceEEEECHHHH
Confidence 34678877 8999999999999999999985 65432 223333 47877 578999764 2368899999887
Q ss_pred hhhc
Q 005009 709 DSFV 712 (719)
Q Consensus 709 ~~~~ 712 (719)
+.+.
T Consensus 210 ~~~~ 213 (363)
T TIGR02326 210 AACK 213 (363)
T ss_pred HHhh
Confidence 7653
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.3e-05 Score=87.58 Aligned_cols=90 Identities=16% Similarity=0.139 Sum_probs=64.7
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCC
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~ 681 (719)
+.+++.++. ..+++..|++..+ ....|.+.| +++|.++|++||+++|+|++|+ +|.. .+..+.+|+.
T Consensus 159 ~~l~~~~~~-----~~~~t~lv~~~~v-~~~tG~~~~----~~~i~~~~~~~g~~~~vD~aq~-~G~~--~id~~~~gvD 225 (406)
T TIGR01814 159 EDILDTIEK-----NGDDIAVILLSGV-QYYTGQLFD----MAAITRAAHAKGALVGFDLAHA-VGNV--PLDLHDWGVD 225 (406)
T ss_pred HHHHHHHHh-----cCCCeEEEEEecc-ccccceecC----HHHHHHHHHHcCCEEEEEcccc-cCCc--ccccccCCCC
Confidence 345555542 2357889999998 899999998 9999999999999999999996 4443 2334455555
Q ss_pred cceeeehhccCCCccchheeEeCHH
Q 005009 682 PDIACYGKLLTGGVIPLAATLATNA 706 (719)
Q Consensus 682 PDIvtlgK~LggG~~Plsavl~~~~ 706 (719)
.-+.+.-|.|.|| |-+++.++++
T Consensus 226 ~~~~s~hK~l~g~--pG~~l~v~~~ 248 (406)
T TIGR01814 226 FACWCTYKYLNAG--PGAGAFVHEK 248 (406)
T ss_pred EEEEcCccccCCC--CCeEEEEehh
Confidence 5455778999887 3344455444
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=3e-05 Score=88.70 Aligned_cols=88 Identities=9% Similarity=-0.046 Sum_probs=55.0
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEE-ccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC
Q 005009 602 SYISQNLLQNPGLKVSGCIGALII-EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIv-EPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv 680 (719)
+.+++.+.+. .+ + .||+ |.+ .|..+ + +++++++|++||++|++|+.|. +|-.|.......++
T Consensus 173 d~Le~~l~~~----~p-k--lIv~~~S~-~s~~~---D----~a~i~~ia~~~ga~LlvD~AH~-~Gli~~~~~~~p~~- 235 (475)
T PLN03226 173 DKLEKKAMLF----RP-K--LIIAGASA-YPRDW---D----YARMRKIADKVGALLMCDMAHI-SGLVAAQEAASPFE- 235 (475)
T ss_pred HHHHHHHhhc----CC-e--EEEEecCc-CCCcc---C----HHHHHHHHHHcCCEEEEEchhh-hCcccCCCCCCCCC-
Confidence 5677777531 12 2 3344 776 55444 3 6789999999999999999995 55555432212222
Q ss_pred Cccee--eehhccCCCccchheeEeCHHHH
Q 005009 681 VPDIA--CYGKLLTGGVIPLAATLATNAVF 708 (719)
Q Consensus 681 ~PDIv--tlgK~LggG~~Plsavl~~~~i~ 708 (719)
..|++ |+.|+|.|- .-|.+++++++.
T Consensus 236 ~~Div~~t~hK~L~GP--~Gg~I~~~~~~~ 263 (475)
T PLN03226 236 YCDVVTTTTHKSLRGP--RGGMIFFRKGPK 263 (475)
T ss_pred CCeEEEecCcccccCC--CceEEEEchhhc
Confidence 47887 677999642 113467677544
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.4e-05 Score=84.92 Aligned_cols=213 Identities=8% Similarity=0.024 Sum_probs=123.4
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhccccc-CCCC-----CChHHHHHHHHHHhccCCCCCCeEEEeCChHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM-FPEN-----VYEPALECAELLLQGVGKGWASRAYFSDNGSTA 473 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~-~~~~-----~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA 473 (719)
.|||.. ..|-- .+.+.+|+.+.+....... ...+ ..+...++-+.|+++++...-+.+.|++++++|
T Consensus 18 iyld~a------~~~~~-p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~t~g~t~~ 90 (398)
T TIGR03392 18 VYLDSA------ATALK-PQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENIVWTRGTTES 90 (398)
T ss_pred EEeeCc------cccCC-CHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChHHH
Confidence 688844 45666 8899999988775432111 0000 112344566777887764223579999999999
Q ss_pred HHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcc
Q 005009 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (719)
Q Consensus 474 ~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~ 553 (719)
+..++... ....-+ ...+||..+..|++.......+... .+.
T Consensus 91 l~~~~~~~-~~~~~~----------------~gd~Vl~~~~~~~s~~~~~~~~~~~--------------~g~------- 132 (398)
T TIGR03392 91 INLVAQSY-ARPRLQ----------------PGDEIIVSEAEHHANLIPWLMVAQQ--------------TGA------- 132 (398)
T ss_pred HHHHHHHh-hhccCC----------------CCCEEEECCcchhHHHHHHHHHHHH--------------cCc-------
Confidence 99888765 110001 1236888887777632111111000 000
Q ss_pred cccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 005009 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (719)
Q Consensus 554 ~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~g 633 (719)
....++.+..+ . -| .+.+++.+.+ +...|++.-+ +...
T Consensus 133 ----~v~~v~~~~~~------------~---------~~--------~~~l~~~i~~--------~t~lv~i~~~-~n~t 170 (398)
T TIGR03392 133 ----KVVKLPIGADL------------L---------PD--------IRQLPELLTP--------RTRILALGQM-SNVT 170 (398)
T ss_pred ----EEEEEecCCCC------------C---------cC--------HHHHHHHhcc--------CceEEEEECc-cccc
Confidence 00111111000 0 00 2456666642 3345555544 6777
Q ss_pred ccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeeh--hccCC-CccchheeEeCHHHHhh
Q 005009 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTG-GVIPLAATLATNAVFDS 710 (719)
Q Consensus 634 G~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~Lgg-G~~Plsavl~~~~i~~~ 710 (719)
|.+.+ +++|.++|++||+++|+|++|. +|.. . . +.....+|+++++ |.+|- | +|.+++++++.+.
T Consensus 171 G~~~~----~~~i~~~~~~~~~~~ivD~a~~-~~~~-~-~--~~~~~~~d~~~~s~~K~~gp~G---~G~l~~~~~~~~~ 238 (398)
T TIGR03392 171 GGCPD----LARAITLAHQYGAVVVVDGAQG-VVHG-P-P--DVQALDIDFYAFSGHKLYGPTG---IGVLYGKTELLEA 238 (398)
T ss_pred cccCC----HHHHHHHHHHcCCEEEEEhhhh-cCCC-C-C--ChhhcCCCEEEEecccccCCCc---eEEEEEcHHHHhh
Confidence 88877 8899999999999999999995 3322 1 1 1122357999998 96652 3 6788899988766
Q ss_pred h
Q 005009 711 F 711 (719)
Q Consensus 711 ~ 711 (719)
+
T Consensus 239 ~ 239 (398)
T TIGR03392 239 M 239 (398)
T ss_pred C
Confidence 5
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=98.15 E-value=5.3e-05 Score=84.61 Aligned_cols=213 Identities=10% Similarity=-0.002 Sum_probs=123.6
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhccccc-CCCC-----CChHHHHHHHHHHhccCCCCCCeEEEeCChHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM-FPEN-----VYEPALECAELLLQGVGKGWASRAYFSDNGSTA 473 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~-~~~~-----~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA 473 (719)
.|||..+ .|-- .+.+.+++.+.+....... .... ..+...++-++|+++++...-+.++|+++++|+
T Consensus 25 iYld~a~------~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~~ 97 (406)
T PRK09295 25 AYLDSAA------SAQK-PSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSAEELVFVRGTTEG 97 (406)
T ss_pred EEEeCcc------cccC-CHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHH
Confidence 7888554 4556 8899999988776532111 0011 123355666777787764113689999999999
Q ss_pred HHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcc
Q 005009 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (719)
Q Consensus 474 ~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~ 553 (719)
+..+++.. ....-+. ..+||..+..||+....-..+... .+.
T Consensus 98 l~~~~~~~-~~~~~~~----------------gd~vl~~~~~~~s~~~~~~~~~~~--------------~g~------- 139 (406)
T PRK09295 98 INLVANSW-GNSNVRA----------------GDNIIISEMEHHANIVPWQMLCAR--------------VGA------- 139 (406)
T ss_pred HHHHHHHh-hhhcCCC----------------cCEEEECcchhhHHHHHHHHHHHH--------------cCc-------
Confidence 99888754 1111111 236777777777632211111000 000
Q ss_pred cccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 005009 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (719)
Q Consensus 554 ~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~g 633 (719)
....++.+... . -+ .+.+++.+. .+...|++--+ ....
T Consensus 140 ----~v~~v~~~~~~-------------~--------~d--------~~~l~~~i~--------~~t~lv~l~~~-~n~t 177 (406)
T PRK09295 140 ----ELRVIPLNPDG-------------T--------LQ--------LETLPALFD--------ERTRLLAITHV-SNVL 177 (406)
T ss_pred ----EEEEEecCCCC-------------C--------CC--------HHHHHHhcC--------CCcEEEEEecc-hhcc
Confidence 00111111000 0 00 245555553 23455555554 6778
Q ss_pred ccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeeh--hccCC-CccchheeEeCHHHHhh
Q 005009 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTG-GVIPLAATLATNAVFDS 710 (719)
Q Consensus 634 G~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~Lgg-G~~Plsavl~~~~i~~~ 710 (719)
|.+.+ +++|.++|+++|+++|+|++|. +|..- +-.+ ...+|+++++ |.+|- | +|.+.+++++.+.
T Consensus 178 G~~~~----~~~i~~~~~~~~~~vivD~a~~-~g~~~--~~~~--~~~~D~~~~s~~K~~gp~G---~G~l~~~~~~~~~ 245 (406)
T PRK09295 178 GTENP----LAEMIALAHQHGAKVLVDGAQA-VMHHP--VDVQ--ALDCDFYVFSGHKLYGPTG---IGILYVKEALLQE 245 (406)
T ss_pred cccCC----HHHHHHHHHHcCCEEEEEcccc-cCccc--cCch--hcCCCEEEeehhhccCCCC---cEEEEEchHhHhh
Confidence 99887 8999999999999999999995 54331 2222 2357998776 95542 3 6788899988765
Q ss_pred h
Q 005009 711 F 711 (719)
Q Consensus 711 ~ 711 (719)
+
T Consensus 246 ~ 246 (406)
T PRK09295 246 M 246 (406)
T ss_pred C
Confidence 4
|
|
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.2e-05 Score=85.92 Aligned_cols=185 Identities=15% Similarity=0.104 Sum_probs=107.8
Q ss_pred HHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCC
Q 005009 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498 (719)
Q Consensus 419 P~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~ 498 (719)
++-.+++.+.+..... ...+...+|.++|+++.+. +.+++++||++|+..|++.. . -..
T Consensus 14 ~~e~~~~~~~l~~~~~-----~~g~~~~~le~~la~~~g~---~~~v~~~sgt~al~lal~al-~---~~~--------- 72 (379)
T PRK11658 14 DEELAAVKEVLRSGWI-----TTGPKNQALEQAFCQLTGN---QHAIAVSSATAGMHITLMAL-G---IGP--------- 72 (379)
T ss_pred HHHHHHHHHHHHcCCc-----cCCHhHHHHHHHHHHHhCC---CeEEEECCHHHHHHHHHHHc-C---CCC---------
Confidence 4556677776654322 1245678999999999874 56888999999999998765 1 011
Q ss_pred CccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCc-chhhhccccccc
Q 005009 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP-EWLYSKIVEHKD 577 (719)
Q Consensus 499 ~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P-~~~~~~~~~~~~ 577 (719)
..+||.-...|.+. ..++...|.. ...++.. +.
T Consensus 73 -------Gd~Viv~~~~~~~~-~~~~~~~G~~----------------------------~v~vd~~~~~---------- 106 (379)
T PRK11658 73 -------GDEVITPSLTWVST-LNMIVLLGAT----------------------------PVMVDVDRDT---------- 106 (379)
T ss_pred -------CCEEEECCCcHHHH-HHHHHHcCCE----------------------------EEEEecCCCc----------
Confidence 13677777777663 2222222110 0011110 00
Q ss_pred ccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcE
Q 005009 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (719)
Q Consensus 578 ~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilL 657 (719)
++ -| .+.+++.+. .++.+|+ |+ . ..|...+ +++|.++|++||+++
T Consensus 107 --~~---------~d--------~~~l~~~i~--------~~tkav~--~~-~-~~G~~~d----~~~i~~~a~~~gi~v 151 (379)
T PRK11658 107 --LM---------VT--------PEAIEAAIT--------PRTKAII--PV-H-YAGAPAD----LDAIRAIGERYGIPV 151 (379)
T ss_pred --CC---------cC--------HHHHHHhcc--------cCCeEEE--Ee-C-CCCCcCC----HHHHHHHHHHcCCeE
Confidence 00 00 245666654 1344555 43 2 2355544 789999999999999
Q ss_pred EEecccc-CccccCccccccccCCCcceeeeh--hccCCCccchheeEeC-HHHHhhh
Q 005009 658 IFDEVFT-GFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLAT-NAVFDSF 711 (719)
Q Consensus 658 I~DEVqT-GfGRtG~~~a~e~~gv~PDIvtlg--K~LggG~~Plsavl~~-~~i~~~~ 711 (719)
|.|++|+ |.-..|+.. ..+|+ |+..|+ |.|++| ..|+++++ +++++.+
T Consensus 152 i~D~a~a~g~~~~~~~~--g~~g~--~~~Sf~~~K~l~~g--~GG~v~~~~~~~~~~~ 203 (379)
T PRK11658 152 IEDAAHAVGTYYKGRHI--GARGT--AIFSFHAIKNITCA--EGGLVVTDDDELADRL 203 (379)
T ss_pred EEECCCccCCeECCeec--CCCCC--EEEeCCCCCcCccc--CceEEEECCHHHHHHH
Confidence 9999997 432233222 12343 666554 888776 45556664 6766544
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.13 E-value=8.2e-05 Score=82.58 Aligned_cols=220 Identities=16% Similarity=0.094 Sum_probs=123.8
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccc-cCCCCCChHHHHHHHHHHhccCCCC-C-CeEEEeCChHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHV-MFPENVYEPALECAELLLQGVGKGW-A-SRAYFSDNGSTAIEI 476 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~-~~~~~~~~~~~~Lae~L~~~~~~~~-~-~rv~f~~SGsEA~E~ 476 (719)
.++|+..|.. .++ . +|.+.+++++.++..... .......+....+++.+.+..+... - +.+.++++|++|...
T Consensus 31 ~~i~l~~g~~--~~~-~-~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~ 106 (386)
T PRK09082 31 GAINLSQGFP--DFD-G-PPYLVEALAYAMAAGHNQYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALFA 106 (386)
T ss_pred CEEEecCCCC--CCC-C-CHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHH
Confidence 5677766533 233 3 688889888776542111 1112233455677777776554211 1 268899999999999
Q ss_pred HHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCccccc
Q 005009 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (719)
Q Consensus 477 AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (719)
+++... ..| .+|+...-+|-+ ...++...|.
T Consensus 107 ~~~~~~-----~~g----------------d~Vli~~p~y~~-~~~~~~~~g~--------------------------- 137 (386)
T PRK09082 107 AILALV-----RPG----------------DEVIVFDPSYDS-YAPAIELAGG--------------------------- 137 (386)
T ss_pred HHHHHc-----CCC----------------CEEEEeCCCchh-hHHHHHHcCC---------------------------
Confidence 887651 111 256665554443 2222222111
Q ss_pred CcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccc
Q 005009 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (719)
Q Consensus 557 ~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~ 636 (719)
..+++|... .+ + .-| .+.+++.+. .++.+|++... +.--|..
T Consensus 138 ---~~~~~~~~~------------~~----~--~~d--------~~~l~~~~~--------~~~~~v~l~~p-~NPtG~~ 179 (386)
T PRK09082 138 ---RAVRVALQP------------PD----F--RVD--------WQRFAAAIS--------PRTRLIILNTP-HNPSGTV 179 (386)
T ss_pred ---EEEEEecCc------------cc----c--cCC--------HHHHHHhcC--------ccceEEEEeCC-CCCCCcC
Confidence 111111000 00 0 000 244555553 23445566543 5555665
Q ss_pred cCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc--ccccccCCCcc-ee--eehhccC-CCccchheeEeCHHHHhh
Q 005009 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE--TTADLLGCVPD-IA--CYGKLLT-GGVIPLAATLATNAVFDS 710 (719)
Q Consensus 637 ~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~--~a~e~~gv~PD-Iv--tlgK~Lg-gG~~Plsavl~~~~i~~~ 710 (719)
. +.+-++++.++|++||+++|+||+...+--.+.. ...+..+..+. ++ +|||.+| .| +-+|.+++.+++++.
T Consensus 180 ~-~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~iv~~~~l~~~ 257 (386)
T PRK09082 180 W-SAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTG-WKVGYCVAPAALSAE 257 (386)
T ss_pred C-CHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccchh-hhhhhhhCCHHHHHH
Confidence 4 5788999999999999999999998654222221 11122222222 33 7899997 67 788999999999877
Q ss_pred hc
Q 005009 711 FV 712 (719)
Q Consensus 711 ~~ 712 (719)
+.
T Consensus 258 ~~ 259 (386)
T PRK09082 258 FR 259 (386)
T ss_pred HH
Confidence 64
|
|
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.5e-05 Score=85.06 Aligned_cols=207 Identities=12% Similarity=0.048 Sum_probs=120.8
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCC-----CChHHHHHHHHHHhccCCCCCCeEEEeCChHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPEN-----VYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~-----~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~ 474 (719)
.|||- ...|.- ++.+.+|+.+.+........... ..+...++.+.|+++++.. -+.++|++++++|+
T Consensus 2 ~yld~------a~~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~-~~~i~~~~g~t~a~ 73 (381)
T PRK02948 2 IYLDY------AATTPM-SKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIGGE-EQGIYFTSGGTESN 73 (381)
T ss_pred EeccC------CCCCCC-CHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEeCcHHHHH
Confidence 47773 346667 89999999887764321111011 1234556677788887643 36799999999999
Q ss_pred HHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCccc
Q 005009 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (719)
Q Consensus 475 E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~ 554 (719)
..+++.+.+... . +.+.|......|.+....+..... .+ .-
T Consensus 74 ~~~~~~~~~~~~-~-----------------~g~~vv~~~~~h~s~~~~~~~~~~---~g-----------~~------- 114 (381)
T PRK02948 74 YLAIQSLLNALP-Q-----------------NKKHIITTPMEHASIHSYFQSLES---QG-----------YT------- 114 (381)
T ss_pred HHHHHHHHHhcc-C-----------------CCCEEEECCcccHHHHHHHHHHHh---CC-----------CE-------
Confidence 999987732110 1 123344455555544333221100 00 00
Q ss_pred ccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCc
Q 005009 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (719)
Q Consensus 555 ~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG 634 (719)
...++..... ..| .+.+++.+. ++...|+++-+ ....|
T Consensus 115 ----v~~v~~~~~~-----------~~d------------------~~~l~~~l~--------~~~~lv~~~~~-~n~tG 152 (381)
T PRK02948 115 ----VTEIPVDKSG-----------LIR------------------LVDLERAIT--------PDTVLASIQHA-NSEIG 152 (381)
T ss_pred ----EEEEeeCCCC-----------CCC------------------HHHHHHhcC--------CCCEEEEEECC-cCCcE
Confidence 0011111000 011 245555553 23457777765 78889
Q ss_pred cccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee--eehhccCC-CccchheeEeCHHH
Q 005009 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG-GVIPLAATLATNAV 707 (719)
Q Consensus 635 ~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlgK~Lgg-G~~Plsavl~~~~i 707 (719)
.+.+ +++|.++|+++|+++|+|++|+ ||.... ..+.+ ..|++ ++.|.+|- | +|++++++++
T Consensus 153 ~~~~----~~~I~~l~~~~~~~vivD~~~~-~g~~~~--~~~~~--~~d~~~~s~~K~~gp~G---~G~l~~~~~~ 216 (381)
T PRK02948 153 TIQP----IAEIGALLKKYNVLFHSDCVQT-FGKLPI--DVFEM--GIDSLSVSAHKIYGPKG---VGAVYINPQV 216 (381)
T ss_pred eehh----HHHHHHHHHHcCCEEEEEChhh-cccccc--CcccC--CCCEEEecHHhcCCCCc---EEEEEEcCCC
Confidence 9887 8899999999999999999985 765332 22233 36776 67897652 3 5677777764
|
|
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.4e-05 Score=84.82 Aligned_cols=188 Identities=14% Similarity=0.138 Sum_probs=113.0
Q ss_pred HHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCC
Q 005009 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498 (719)
Q Consensus 419 P~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~ 498 (719)
++..+|+.+.+...... ...+...++++.+++..+ .+.+++++||++|...+++.. . -.
T Consensus 11 ~~e~~a~~~~~~~~~~~----~~g~~~~~~e~~la~~~g---~~~~v~~~sgt~aL~~~l~al-~---~~---------- 69 (376)
T TIGR02379 11 GQELEYIAEAISEGKLS----GDGPFSRRCETWLENRTG---TKKALLTPSCTAALEMAALLL-D---IQ---------- 69 (376)
T ss_pred HHHHHHHHHHHHcCCcc----CCcHHHHHHHHHHHHHhC---CCeEEEeCCHHHHHHHHHHHc-C---CC----------
Confidence 45577777766553221 124567899999999876 468999999999998888755 0 01
Q ss_pred CccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCc-chhhhccccccc
Q 005009 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP-EWLYSKIVEHKD 577 (719)
Q Consensus 499 ~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P-~~~~~~~~~~~~ 577 (719)
....||....+|.+. ..++...|.. ...++.. +.+
T Consensus 70 ------pGd~Viv~~~t~~~~-~~~~~~~G~~----------------------------~v~vd~d~~~~--------- 105 (376)
T TIGR02379 70 ------PGDEVIMPSYTFVST-ANAFVLRGAK----------------------------IVFVDIRPDTM--------- 105 (376)
T ss_pred ------CcCEEEECCCCcHHH-HHHHHHcCCE----------------------------EEEEecCCCcC---------
Confidence 124677777776653 2222211110 0011111 000
Q ss_pred ccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcE
Q 005009 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (719)
Q Consensus 578 ~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilL 657 (719)
+ -| .+.+++.+. .++.+|+ |+ . ..|...+ +++|.++|++||+++
T Consensus 106 ---~---------~d--------~~~le~~i~--------~~tk~Ii--p~-~-~~G~~~d----~~~I~~la~~~~i~v 149 (376)
T TIGR02379 106 ---N---------ID--------ETLIESAIT--------HRTKAIV--PV-H-YAGVACD----MDTIMALANKHQLFV 149 (376)
T ss_pred ---C---------CC--------HHHHHHhcC--------cCceEEE--Ee-C-CCCCccC----HHHHHHHHHHCCCEE
Confidence 0 01 244665553 1344554 54 3 3455555 789999999999999
Q ss_pred EEeccccCccccCccccccccCCCcceeeeh----hccCCCccchheeEeC-HHHHhhhc
Q 005009 658 IFDEVFTGFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLAT-NAVFDSFV 712 (719)
Q Consensus 658 I~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg----K~LggG~~Plsavl~~-~~i~~~~~ 712 (719)
|.|++|+ +|.+ +.-...|..-|+.+|+ |.++.| ...|++++. +++++.+.
T Consensus 150 IeDaa~~-~g~~---~~~~~~g~~~~~~~fSf~~~K~l~~g-~~gG~v~~~~~~~~~~~~ 204 (376)
T TIGR02379 150 IEDAAQG-VMST---YKGRALGSIGHLGTFSFHETKNYTSG-GEGGALLINDQAFIERAE 204 (376)
T ss_pred EEECccc-cCCc---cCCcccCCCCCEEEEeCCCCCcCccc-CCceEEEECCHHHHHHHH
Confidence 9999995 5432 2222334445889998 999866 356777776 67776543
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.2e-05 Score=87.53 Aligned_cols=80 Identities=16% Similarity=0.159 Sum_probs=57.1
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceee--ehhccCC-Cc
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTG-GV 695 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvt--lgK~Lgg-G~ 695 (719)
+..+|++|-. ..-.|.+.+ +++|.++|+++|+++|+||++. .+-.+... .+| .|+++ ++|.++| |
T Consensus 146 ~tklV~lesp-~NptG~v~d----l~~I~~la~~~g~~vivD~a~a-~~~~~~pl---~~g--~Div~~S~sK~l~g~g- 213 (386)
T PRK06767 146 NTKLIFVETP-INPTMKLID----LKQVIRVAKRNGLLVIVDNTFC-SPYLQRPL---ELG--CDAVVHSATKYIGGHG- 213 (386)
T ss_pred CceEEEEeCC-CCCCceecC----HHHHHHHHHHcCCEEEEECCCc-ccccCCch---hcC--CcEEEecCcceecCCC-
Confidence 4568888875 677787776 8999999999999999999984 22222211 123 48774 5699977 5
Q ss_pred cch-heeEeCHHHHhh
Q 005009 696 IPL-AATLATNAVFDS 710 (719)
Q Consensus 696 ~Pl-savl~~~~i~~~ 710 (719)
.++ |+++++++.++.
T Consensus 214 ~~~gG~v~~~~~~i~~ 229 (386)
T PRK06767 214 DVVAGVTICKTRALAE 229 (386)
T ss_pred CceeEEEEeChHHHHH
Confidence 565 678888876654
|
|
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.4e-05 Score=87.31 Aligned_cols=80 Identities=16% Similarity=0.141 Sum_probs=55.3
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee--eehhccCC-Cc
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG-GV 695 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlgK~Lgg-G~ 695 (719)
+..+|++|.. ....|.+.+ +++|.++|++||+++|+||++.. +...... .+ ..|++ .++|.++| |
T Consensus 146 ~tklV~ie~p-~NptG~v~d----l~~I~~la~~~gi~livD~t~~~-~~~~~pl---~~--g~Divv~S~sK~~~g~g- 213 (390)
T PRK08133 146 NTKLFFLETP-SNPLTELAD----IAALAEIAHAAGALLVVDNCFCT-PALQQPL---KL--GADVVIHSATKYLDGQG- 213 (390)
T ss_pred CCeEEEEECC-CCCCCCcCC----HHHHHHHHHHcCCEEEEECCCcc-cccCCch---hh--CCcEEEeecceeecCCc-
Confidence 5678899875 676787776 89999999999999999999842 1111111 12 35877 46899976 4
Q ss_pred cch-heeEeCHHHHhh
Q 005009 696 IPL-AATLATNAVFDS 710 (719)
Q Consensus 696 ~Pl-savl~~~~i~~~ 710 (719)
-.+ |++++++++++.
T Consensus 214 ~~~GG~vv~~~~~~~~ 229 (390)
T PRK08133 214 RVLGGAVVGSKELMEE 229 (390)
T ss_pred ceEeEEEEcCHHHHHH
Confidence 455 456677766543
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.5e-05 Score=87.17 Aligned_cols=82 Identities=12% Similarity=0.105 Sum_probs=59.0
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee--eehhccCC-Cc
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG-GV 695 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlgK~Lgg-G~ 695 (719)
+..+|++|-. ....|.+.+ +++|.++|+++|+++|+||++. .+-.+.. .+...|++ +++|.+|| |
T Consensus 144 ~tklV~le~p-~Np~G~v~d----l~~I~~la~~~gi~livD~a~a-~~~~~~~-----~~~g~Divv~S~sK~lgg~g- 211 (391)
T TIGR01328 144 NTKIVYFETP-ANPTMKLID----MERVCRDAHSQGVKVIVDNTFA-TPMLTNP-----VALGVDVVVHSATKYIGGHG- 211 (391)
T ss_pred CCeEEEEECC-CCCCCcccC----HHHHHHHHHHcCCEEEEECCCc-hhccCCc-----hhcCCCEEEccccccccCCC-
Confidence 4568889975 676777766 8999999999999999999985 2222322 23356776 57899986 4
Q ss_pred cc-hheeEeCHHHHhhhc
Q 005009 696 IP-LAATLATNAVFDSFV 712 (719)
Q Consensus 696 ~P-lsavl~~~~i~~~~~ 712 (719)
.+ .|++++++++++.+.
T Consensus 212 ~~~gG~v~~~~~li~~l~ 229 (391)
T TIGR01328 212 DVVAGLICGKAELLQQIR 229 (391)
T ss_pred CceEEEEEcCHHHHHHHH
Confidence 34 356778888776554
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00013 Score=81.01 Aligned_cols=208 Identities=9% Similarity=-0.015 Sum_probs=123.4
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCC-----CChHHHHHHHHHHhccCCCCCCeEEEeCChHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPEN-----VYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~-----~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~ 474 (719)
.|||..+ .|-- ++.+.+|+.+.+..........+ ..+...++.+.|+++++.. -+.+.|++++++++
T Consensus 19 ~yl~~~~------~~~~-p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~~-~~~v~~~~~~t~~l 90 (397)
T TIGR01976 19 VFFDNPA------GTQI-PQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNAD-PPEVVFGANATSLT 90 (397)
T ss_pred EEecCCc------cCCC-CHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCC-CCeEEEeCCHHHHH
Confidence 6777543 5556 89999999988865432110111 1234568888888887743 23699999999988
Q ss_pred HHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccc-cc---cCCCCCCCCCCCCCccCCCcccCC
Q 005009 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM-EA---QAPSPYTGFLQQPWYSGRGLFLDP 550 (719)
Q Consensus 475 E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~gal-sl---t~~~~~~~~~~~~~~~~~~~~~~~ 550 (719)
..++... .... .+ ..+||..+..|.+. ...+ .+ .|..
T Consensus 91 ~~~~~~~-~~~~-~~----------------gd~vl~~~~~~~s~-~~~~~~~~~~~g~~-------------------- 131 (397)
T TIGR01976 91 FLLSRAI-SRRW-GP----------------GDEVIVTRLDHEAN-ISPWLQAAERAGAK-------------------- 131 (397)
T ss_pred HHHHHHH-HhcC-CC----------------CCEEEEcCCchHhH-HHHHHHHHHhcCCE--------------------
Confidence 7666554 1111 11 13677766655542 2111 11 1100
Q ss_pred CcccccCcceeecCcc-hhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccc
Q 005009 551 PTVFMYNSKWILSLPE-WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVV 629 (719)
Q Consensus 551 p~~~~~~~~~~~~~P~-~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPVi 629 (719)
...++.+. .+ ..+ .+.+++.+. ++..+|++.-+
T Consensus 132 --------~~~~~~~~~~~-----------~~~------------------~~~l~~~i~--------~~~~lv~i~~~- 165 (397)
T TIGR01976 132 --------VKWARVDEATG-----------ELH------------------PDDLASLLS--------PRTRLVAVTAA- 165 (397)
T ss_pred --------EEEEeccccCC-----------CcC------------------HHHHHHhcC--------CCceEEEEeCC-
Confidence 00111110 00 000 245665553 24566777665
Q ss_pred ccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee--eehhccCCCccchheeEeCHHH
Q 005009 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAV 707 (719)
Q Consensus 630 qg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlgK~LggG~~Plsavl~~~~i 707 (719)
....|.+.+ +++|.++|++||+++|+||+|. +| .+. ..... ..+|++ ++.|.+| .++|.+++++++
T Consensus 166 ~n~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~~-~~~-~~~~~--~~~d~~~~s~~K~~g---~~~G~l~~~~~~ 233 (397)
T TIGR01976 166 SNTLGSIVD----LAAITELVHAAGALVVVDAVHY-AP-HGL-IDVQA--TGADFLTCSAYKFFG---PHMGILWGRPEL 233 (397)
T ss_pred CCCCCccCC----HHHHHHHHHHcCCEEEEehhhh-cc-ccC-CCHHH--cCCCEEEEechhhcC---CceEEEEEcHHH
Confidence 677888877 9999999999999999999995 32 121 11222 347877 6789874 357889999998
Q ss_pred Hhhhc
Q 005009 708 FDSFV 712 (719)
Q Consensus 708 ~~~~~ 712 (719)
.+.+.
T Consensus 234 ~~~l~ 238 (397)
T TIGR01976 234 LMNLP 238 (397)
T ss_pred HhhCC
Confidence 77654
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=6.5e-05 Score=81.33 Aligned_cols=68 Identities=13% Similarity=-0.006 Sum_probs=51.6
Q ss_pred eeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCC-CChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHH
Q 005009 401 QFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPEN-VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (719)
Q Consensus 401 yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~-~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlK 479 (719)
.||+.| +.+-| - +|.+.+|+.+...... .+ ..+...+|.++|++..+ .+.+.++++|++|+..++.
T Consensus 1 ~~~~~~---~~~~~-p-~~~~~~a~~~~~~~~~-----~Y~~~~~~~~L~~~la~~~g---~~~~~v~~~g~~a~~~~l~ 67 (333)
T PRK10534 1 MIDLRS---DTVTR-P-SRAMLEAMMAAPVGDD-----VYGDDPTVNALQDYAAELSG---KEAALFLPTGTQANLVALL 67 (333)
T ss_pred Cccccc---ccCCC-C-CHHHHHHHHhccCCCc-----ccCCCHHHHHHHHHHHHHhC---CCeEEEeCchHHHHHHHHH
Confidence 367877 66677 6 8999999987554322 23 35678899999999987 4677899999999888887
Q ss_pred HH
Q 005009 480 MA 481 (719)
Q Consensus 480 lA 481 (719)
..
T Consensus 68 ~~ 69 (333)
T PRK10534 68 SH 69 (333)
T ss_pred Hh
Confidence 54
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=98.08 E-value=8.6e-05 Score=82.16 Aligned_cols=88 Identities=19% Similarity=0.210 Sum_probs=61.7
Q ss_pred EEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcc-e--eeehhccC-CCc
Q 005009 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPD-I--ACYGKLLT-GGV 695 (719)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PD-I--vtlgK~Lg-gG~ 695 (719)
+.+|++... +.-.|.+. +++.+++|.++|++||+++|+||++.++...+..... ....+. | -+++|.+| .|
T Consensus 154 ~kli~i~~p-~NPtG~~~-~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~s~--~~~~~~~I~~~s~SK~~~~~G- 228 (373)
T PRK07324 154 TKLICINNA-NNPTGALM-DRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTPSI--ADLYEKGISTNSMSKTYSLPG- 228 (373)
T ss_pred CcEEEEeCC-CCCCCCCC-CHHHHHHHHHHHHHCCCEEEEEccccccccCCCCCCh--hhccCCEEEEecchhhcCCcc-
Confidence 334555432 44456544 7889999999999999999999999887554432211 112222 2 37999998 68
Q ss_pred cchheeEeCHHHHhhhc
Q 005009 696 IPLAATLATNAVFDSFV 712 (719)
Q Consensus 696 ~Plsavl~~~~i~~~~~ 712 (719)
+-+|.+++++++++.+.
T Consensus 229 ~RiG~i~~~~~li~~~~ 245 (373)
T PRK07324 229 IRVGWIAANEEVIDILR 245 (373)
T ss_pred ceeEEEecCHHHHHHHH
Confidence 68899999998887664
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=4.4e-05 Score=84.33 Aligned_cols=85 Identities=12% Similarity=0.202 Sum_probs=59.2
Q ss_pred EEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee---eehhccC-CCccc
Q 005009 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIP 697 (719)
Q Consensus 622 AvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv---tlgK~Lg-gG~~P 697 (719)
.++..|. .-. |.+. +.+-++++.++|+ +|++||+||+...|+..|...... ...|+++ +|||.+| .| +.
T Consensus 159 i~l~~P~-NPt-G~~~-~~~~l~~l~~~~~-~~~~lI~DE~y~~~~~~~~~~~~~--~~~~~~i~~~SfSK~~g~~G-lR 231 (369)
T PRK08153 159 VYLANPD-NPM-GSWH-PAADIVAFIEALP-ETTLLVLDEAYCETAPAGAAPPID--TDDPNVIRMRTFSKAYGLAG-AR 231 (369)
T ss_pred EEEeCCC-CCC-CCCC-CHHHHHHHHHhCC-CCcEEEEeCchhhhcCcccchhhh--hcCCCEEEEecchHhccCcc-hh
Confidence 3345784 444 6655 5566666667776 499999999998886655432221 1234544 8999998 78 79
Q ss_pred hheeEeCHHHHhhhcC
Q 005009 698 LAATLATNAVFDSFVG 713 (719)
Q Consensus 698 lsavl~~~~i~~~~~~ 713 (719)
+|.+++++++++.+..
T Consensus 232 iG~~v~~~~~~~~l~~ 247 (369)
T PRK08153 232 VGYAIGAPGTIKAFDK 247 (369)
T ss_pred eeeeecCHHHHHHHHH
Confidence 9999999999887653
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0002 Score=79.62 Aligned_cols=100 Identities=19% Similarity=0.263 Sum_probs=68.3
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEc-cccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc-ccccccC
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIE-PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLG 679 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvE-PViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~-~a~e~~g 679 (719)
+.+++.+.+ ..+++.++++. | +.-.|... +.+-+++|.++|++||+++|+||++..|--.|.. .....+
T Consensus 154 ~~l~~~~~~-----~~~~~~~i~l~~P--~NPtG~~~-s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~- 224 (391)
T PRK07309 154 EMLEKAILE-----QGDKLKAVILNYP--ANPTGVTY-SREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEY- 224 (391)
T ss_pred HHHHHHhhc-----cCCCeEEEEEECC--CCCCCcCc-CHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHh-
Confidence 456666652 23456667666 6 45556654 5677999999999999999999999866322421 111111
Q ss_pred CCcc--ee--eehhccC-CCccchheeEeCHHHHhhhc
Q 005009 680 CVPD--IA--CYGKLLT-GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 680 v~PD--Iv--tlgK~Lg-gG~~Plsavl~~~~i~~~~~ 712 (719)
.+| |+ +++|.+| .| +-+|.+++++++++.+.
T Consensus 225 -~~~~~i~~~S~SK~~g~~G-lRvG~~v~~~~~~~~~~ 260 (391)
T PRK07309 225 -LPDQTILINGLSKSHAMTG-WRIGLIFAPAEFTAQLI 260 (391)
T ss_pred -ccCCEEEEecChhhccCcc-ceeEEEEeCHHHHHHHH
Confidence 233 33 6999997 67 68889999999987764
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00021 Score=79.22 Aligned_cols=99 Identities=15% Similarity=0.183 Sum_probs=65.3
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc---ccccc
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET---TADLL 678 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~---a~e~~ 678 (719)
+.+++.+++ ...+.+++-| ..-.|... +.+.+++|.++|++||+++|.||+...| +.+... .+...
T Consensus 154 ~~l~~~~~~-------~~~~v~~~~P--~NPtG~~~-~~~~~~~i~~~~~~~~~~iI~Dd~y~~~-~~~~~~~~~~~~~~ 222 (386)
T PRK07550 154 AAAEALITP-------RTRAIALVTP--NNPTGVVY-PPELLHELYDLARRHGIALILDETYRDF-DSGGGAPHDLFADP 222 (386)
T ss_pred HHHHHHhcc-------cCcEEEEeCC--CCCCCccc-CHHHHHHHHHHHHHcCeEEEEeccchhh-ccCCCCCcchhhCC
Confidence 456666642 2234455556 34456644 6889999999999999999999999876 222111 11111
Q ss_pred CCCcc---eeeehhccC-CCccchheeEeCHHHHhhhc
Q 005009 679 GCVPD---IACYGKLLT-GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 679 gv~PD---IvtlgK~Lg-gG~~Plsavl~~~~i~~~~~ 712 (719)
+...+ +.+++|.+| .| +.+|++++++++++.+.
T Consensus 223 ~~~~~~i~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~ 259 (386)
T PRK07550 223 DWDDTLVHLYSFSKSYALTG-HRVGAVVASPARIAEIE 259 (386)
T ss_pred CccccEEEEecchhhccCcc-cceEeeecCHHHHHHHH
Confidence 11122 348999998 78 68999999998887654
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=4.7e-05 Score=85.16 Aligned_cols=170 Identities=15% Similarity=0.112 Sum_probs=104.0
Q ss_pred CCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCccc
Q 005009 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (719)
Q Consensus 439 ~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG 518 (719)
.+.++...+|+++|+++.+. +.+++++||++|+..++.... +.| ..||+....|.+
T Consensus 61 r~~~pt~~~Le~~lA~l~g~---~~~l~~~sgt~Ai~~~l~al~-----~~G----------------D~Vl~~~~~y~~ 116 (394)
T PRK07050 61 LHATPTSLALAQRLAEIEGG---RHALLQPSGLAAISLVYFGLV-----KAG----------------DDVLIPDNAYGP 116 (394)
T ss_pred CCCCHHHHHHHHHHHHHhCC---CeEEEeccHHHHHHHHHHHHh-----CCC----------------CEEEEecCCccc
Confidence 34577788999999998873 689999999999999997652 222 367777777765
Q ss_pred Ccccccc-ccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHH
Q 005009 519 DTLGAME-AQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLA 597 (719)
Q Consensus 519 ~t~gals-lt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~ 597 (719)
. ...+. ... . . |.....+ +. .+
T Consensus 117 ~-~~~~~~~~~-----~---------~-------------Gi~v~~v-----------------d~-------~~----- 139 (394)
T PRK07050 117 N-RDHGEWLAR-----D---------F-------------GITVRFY-----------------DP-------LI----- 139 (394)
T ss_pred H-HHHHHHHHH-----h---------c-------------CeEEEEE-----------------CC-------CC-----
Confidence 2 21110 000 0 0 0000000 00 00
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccc
Q 005009 598 SIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677 (719)
Q Consensus 598 ~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~ 677 (719)
.+.+++.+. .+..+|++|-. ..-.| +..-+++|.++|+++|+++|+||++.- |..+.--.
T Consensus 140 ---~~~l~~~i~--------~~tklV~le~p-~Np~~----~~~di~~I~~ia~~~gi~livD~a~a~----~~~~~~l~ 199 (394)
T PRK07050 140 ---GAGIADLIQ--------PNTRLIWLEAP-GSVTM----EVPDVPAITAAARARGVVTAIDNTYSA----GLAFKPFE 199 (394)
T ss_pred ---HHHHHHhcC--------CCCeEEEEECC-CCCCc----cHhhHHHHHHHHHHcCCEEEEECCccc----ccccCHHH
Confidence 123555553 24568888864 34333 555699999999999999999999852 22211112
Q ss_pred cCCCccee--eehhccCCCc-cchheeEe-CHHHHhhh
Q 005009 678 LGCVPDIA--CYGKLLTGGV-IPLAATLA-TNAVFDSF 711 (719)
Q Consensus 678 ~gv~PDIv--tlgK~LggG~-~Plsavl~-~~~i~~~~ 711 (719)
+| .||+ .+.|.++||- .+.|++++ ++++++.+
T Consensus 200 ~G--aDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~ 235 (394)
T PRK07050 200 HG--VDISVQALTKYQSGGSDVLMGATITADAELHAKL 235 (394)
T ss_pred cC--CeEEEEECCceecCCCCeeEEEEEECCHHHHHHH
Confidence 23 4877 4899997531 46777776 56666544
|
|
| >cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.9e-05 Score=76.03 Aligned_cols=85 Identities=18% Similarity=0.223 Sum_probs=61.0
Q ss_pred cEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCC---C---HH
Q 005009 222 ILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV---N---EV 295 (719)
Q Consensus 222 d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~~---~---~~ 295 (719)
|++||.+.+++.. .........+ -+|+|+.....++..+...++.++..+.+..++|+|++... . .+
T Consensus 64 d~viiD~p~~~~~------~~~~~l~~ad-~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~ 136 (179)
T cd02036 64 DYILIDSPAGIER------GFITAIAPAD-EALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDMVEGGDMVE 136 (179)
T ss_pred CEEEEECCCCCcH------HHHHHHHhCC-cEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccccchhhHHH
Confidence 8999999776432 1222233333 48889999999999999999999888888999999998221 1 23
Q ss_pred HHHHhhcCCCcEEe-cCCCCC
Q 005009 296 PLMSYLRNRVPVLV-LPPLPQ 315 (719)
Q Consensus 296 ~l~~~~~~~~pvlg-lP~~~~ 315 (719)
.+++.+ +.|+++ ||+.+.
T Consensus 137 ~~~~~~--~~~v~~~Ip~~~~ 155 (179)
T cd02036 137 DIEEIL--GVPLLGVIPEDPA 155 (179)
T ss_pred HHHHHh--CCCEEEEecCCHH
Confidence 455555 899988 887553
|
The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer. |
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00029 Score=78.95 Aligned_cols=231 Identities=14% Similarity=0.066 Sum_probs=132.2
Q ss_pred CCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccC--CCCCChHHHHHHHHHHhccCCC-CC-CeEEEeCC
Q 005009 394 KNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF--PENVYEPALECAELLLQGVGKG-WA-SRAYFSDN 469 (719)
Q Consensus 394 G~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~--~~~~~~~~~~Lae~L~~~~~~~-~~-~rv~f~~S 469 (719)
|.|.....+||..|.-+ .+ .- +|.+.+++.+.+........ .....+....+++.+.+..+.. .- +.++++++
T Consensus 34 ~~~~~~~~i~l~~g~~~-~~-~p-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~G 110 (405)
T PRK06207 34 GEPLPGRPVDFSHGDVD-AH-EP-TPGAFELFSAGVERGGVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPG 110 (405)
T ss_pred CCcCCCCceecCCcCCC-CC-CC-CHHHHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCC
Confidence 44444467777765432 22 23 57888888887754321111 1223445667777777754421 12 57999999
Q ss_pred hHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccC
Q 005009 470 GSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLD 549 (719)
Q Consensus 470 GsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~ 549 (719)
+++|...+++... .. ...|+...-+|.+....+ ...|.
T Consensus 111 a~~al~~~~~~l~-----~~----------------Gd~Vlv~~P~y~~~~~~~-~~~g~-------------------- 148 (405)
T PRK06207 111 TQGALFLAVAATV-----AR----------------GDKVAIVQPDYFANRKLV-EFFEG-------------------- 148 (405)
T ss_pred cHHHHHHHHHHhc-----CC----------------CCEEEEeCCCchhHHHHH-HHcCC--------------------
Confidence 9999998888651 11 236888888887633211 11111
Q ss_pred CCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccc
Q 005009 550 PPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVV 629 (719)
Q Consensus 550 ~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPVi 629 (719)
..+++|-.+ .+.+..+ .-| .+.+++.+.+ ..-+.++.-|
T Consensus 149 ----------~v~~v~~~~------------~~~~~~~--~~d--------~~~l~~~~~~-------~~k~v~l~~P-- 187 (405)
T PRK06207 149 ----------EMVPVQLDY------------LSADKRA--GLD--------LDQLEEAFKA-------GVRVFLFSNP-- 187 (405)
T ss_pred ----------EEEEEeccc------------cCcccCC--CcC--------HHHHHHhhhh-------cCeEEEECCC--
Confidence 011111000 0000000 001 2456655542 1223455567
Q ss_pred ccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc-cccccCCCcc-ee---eehhccC-CCccchheeEe
Q 005009 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPD-IA---CYGKLLT-GGVIPLAATLA 703 (719)
Q Consensus 630 qg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~-a~e~~gv~PD-Iv---tlgK~Lg-gG~~Plsavl~ 703 (719)
+.-.|.+. +.+-+++|.++|++||+++|.||+..-|--.|..+ ....+...+| ++ +|+|.++ .| +-+|.+++
T Consensus 188 ~NPTG~~~-s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpG-lRiG~ii~ 265 (405)
T PRK06207 188 NNPAGVVY-SAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSG-YRLGVAFG 265 (405)
T ss_pred CCCCCcCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhccCcc-cceEEEEc
Confidence 44456655 68889999999999999999999998763334321 1112223334 22 6899998 78 68999999
Q ss_pred CHHHHhhhc
Q 005009 704 TNAVFDSFV 712 (719)
Q Consensus 704 ~~~i~~~~~ 712 (719)
++++++.+.
T Consensus 266 ~~~l~~~~~ 274 (405)
T PRK06207 266 SPAIIDRME 274 (405)
T ss_pred CHHHHHHHH
Confidence 999887764
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0002 Score=80.56 Aligned_cols=91 Identities=16% Similarity=0.221 Sum_probs=63.3
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccc-cccCCCcc-ee--eehhccC-C
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA-DLLGCVPD-IA--CYGKLLT-G 693 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~-e~~gv~PD-Iv--tlgK~Lg-g 693 (719)
++.+|++..- +.-.|.+. +.+.+++|.++|++||+++|.||+...|-.-+..... +..+..+. |+ +|||.++ .
T Consensus 187 ~~k~i~i~~p-~NPtG~~~-s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~vi~i~SfSK~~~~~ 264 (413)
T PLN00175 187 KTRAILINTP-HNPTGKMF-TREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERTVTMNSLGKTFSLT 264 (413)
T ss_pred CceEEEecCC-CCCCCcCC-CHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCCcCcEEEEecchhhccCc
Confidence 3455666543 56667654 7899999999999999999999999876322322111 11122222 33 7999998 6
Q ss_pred CccchheeEeCHHHHhhhc
Q 005009 694 GVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~ 712 (719)
| +-+|.+++++++++.+.
T Consensus 265 G-~RiG~~v~~~~l~~~l~ 282 (413)
T PLN00175 265 G-WKIGWAIAPPHLTWGVR 282 (413)
T ss_pred c-hheeeeEeCHHHHHHHH
Confidence 8 78999999999887664
|
|
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.9e-05 Score=81.37 Aligned_cols=80 Identities=23% Similarity=0.306 Sum_probs=50.5
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCC
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~ 681 (719)
+.+++.+.+ ++..-+.++..|. . .|...+ +++|.++|++||+++|+||++...-+.+..+-.......
T Consensus 143 ~~l~~~l~~-----~~~~k~v~l~~p~-~--~G~~~d----l~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~~~ 210 (294)
T cd00615 143 ETFKKALIE-----HPDAKAAVITNPT-Y--YGICYN----LRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMAG 210 (294)
T ss_pred HHHHHHHHh-----CCCceEEEEECCC-C--CCEecC----HHHHHHHHHhcCCeEEEECcchhhhccCcccCcchhhcC
Confidence 556777752 2233345556674 3 577766 899999999999999999999642222221111112235
Q ss_pred ccee--eehhccCC
Q 005009 682 PDIA--CYGKLLTG 693 (719)
Q Consensus 682 PDIv--tlgK~Lgg 693 (719)
.|++ .+.|.|+|
T Consensus 211 ~div~~S~hK~l~g 224 (294)
T cd00615 211 ADIVVQSTHKTLPA 224 (294)
T ss_pred CcEEEEchhcccch
Confidence 6887 57899854
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=5.2e-05 Score=85.06 Aligned_cols=83 Identities=16% Similarity=0.101 Sum_probs=59.3
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee--eehhccCC-Cc
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG-GV 695 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlgK~Lgg-G~ 695 (719)
++.+|++|.. ..-.|...+ +++|.++|++||+++|+|+++.. +..+.. .+...|++ .+.|.++| |-
T Consensus 150 ~tklV~le~p-~NPtG~~~d----i~~I~~la~~~gi~lIvD~a~a~-~~~~~~-----l~~g~Di~v~S~tK~l~g~gd 218 (403)
T PRK07503 150 KTRMVYFETP-ANPNMRLVD----IAAVAEIAHGAGAKVVVDNTYCT-PYLQRP-----LELGADLVVHSATKYLGGHGD 218 (403)
T ss_pred cCcEEEEeCC-CCCCCeeeC----HHHHHHHHHHcCCEEEEECCCcc-cccCCc-----hhhCCCEEEccccccccCCCc
Confidence 4568888865 667787776 89999999999999999999963 222322 23356877 47899986 31
Q ss_pred cchheeEeCHHHHhhhc
Q 005009 696 IPLAATLATNAVFDSFV 712 (719)
Q Consensus 696 ~Plsavl~~~~i~~~~~ 712 (719)
.=.|+++.++++++.+.
T Consensus 219 ~~gG~v~~~~~l~~~l~ 235 (403)
T PRK07503 219 ITAGLVVGGKALADRIR 235 (403)
T ss_pred eeEEEEEcCHHHHHHHH
Confidence 23466777888877654
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00022 Score=79.17 Aligned_cols=88 Identities=17% Similarity=0.270 Sum_probs=60.0
Q ss_pred EEEEEEc-cccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc-cccccccCCCccee--eehhccC-CC
Q 005009 620 IGALIIE-PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPDIA--CYGKLLT-GG 694 (719)
Q Consensus 620 iAAvIvE-PViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~-~~a~e~~gv~PDIv--tlgK~Lg-gG 694 (719)
+.++++. | +.-.|... |.+-+++|.++|+++++++|+||+...|--.+. ......+....+++ +++|.+| .|
T Consensus 167 ~~~v~i~~p--~NPtG~~~-~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G 243 (391)
T PRK08361 167 TRMIVINYP--NNPTGATL-DKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILANSFSKTFAMTG 243 (391)
T ss_pred cEEEEEeCC--CCCCCcCc-CHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCEEEEecCchhcCCcH
Confidence 4445554 5 55567654 678889999999999999999999976522221 11111111123444 7899998 67
Q ss_pred ccchheeEeCHHHHhhh
Q 005009 695 VIPLAATLATNAVFDSF 711 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~ 711 (719)
+-+|.+++++++.+.+
T Consensus 244 -lRiG~~~~~~~~~~~~ 259 (391)
T PRK08361 244 -WRLGFVIAPEQVIKDM 259 (391)
T ss_pred -hhhhhhccCHHHHHHH
Confidence 6888899999888765
|
|
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00022 Score=79.10 Aligned_cols=88 Identities=19% Similarity=0.259 Sum_probs=60.8
Q ss_pred EEEE-EEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc-cccccc-CCCccee---eehhccCC
Q 005009 620 IGAL-IIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLL-GCVPDIA---CYGKLLTG 693 (719)
Q Consensus 620 iAAv-IvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~-~a~e~~-gv~PDIv---tlgK~Lgg 693 (719)
+.+| +.-| +.-.|.+ .+.+-+++|.++|+++|+++|+||+..+|...|.. .....+ +..+.++ +++|.+|.
T Consensus 163 ~~~v~i~~p--~NPtG~~-~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~ 239 (397)
T PRK07568 163 TKAILISNP--GNPTGVV-YTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSA 239 (397)
T ss_pred ceEEEEECC--CCCCCcc-CCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhccC
Confidence 3444 4456 4445654 46777999999999999999999999988655542 111111 2233444 78999984
Q ss_pred -CccchheeEeC-HHHHhhh
Q 005009 694 -GVIPLAATLAT-NAVFDSF 711 (719)
Q Consensus 694 -G~~Plsavl~~-~~i~~~~ 711 (719)
| +.+|.+++. +++.+.+
T Consensus 240 ~G-~R~G~~~~~~~~~~~~~ 258 (397)
T PRK07568 240 CG-ARIGCLISKNKELIAAA 258 (397)
T ss_pred CC-cceEEEecCCHHHHHHH
Confidence 8 799999984 6777654
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00013 Score=80.69 Aligned_cols=188 Identities=11% Similarity=0.033 Sum_probs=106.7
Q ss_pred HHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCC
Q 005009 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498 (719)
Q Consensus 419 P~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~ 498 (719)
++-.+++.+.+...... ..+...+|.+.++++++. +.+++++||++|+..|++.. . -+.
T Consensus 10 ~~~~~~v~~~~~~~~~~-----~g~~~~~le~~la~~~g~---~~~v~~~sgt~al~~~l~al-~---~~~--------- 68 (380)
T TIGR03588 10 QDDIDAVVEVLKSDFLT-----QGPTVPAFEEALAEYVGA---KYAVAFNSATSALHIACLAL-G---VGP--------- 68 (380)
T ss_pred HHHHHHHHHHHhcCCcc-----CChhHHHHHHHHHHHHCC---CeEEEEcCHHHHHHHHHHHc-C---CCC---------
Confidence 44566777766553221 234567899999998874 46677889999999998765 1 111
Q ss_pred CccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecC-cchhhhccccccc
Q 005009 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSL-PEWLYSKIVEHKD 577 (719)
Q Consensus 499 ~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-P~~~~~~~~~~~~ 577 (719)
..+||.....|++.. .++...|.. ...++. |+.+
T Consensus 69 -------Gd~Viv~~~~~~~~~-~~~~~~G~~----------------------------~~~~~~~~~~~--------- 103 (380)
T TIGR03588 69 -------GDRVWTTPITFVATA-NCALYCGAK----------------------------VDFVDIDPDTG--------- 103 (380)
T ss_pred -------CCEEEeCCcchHHHH-HHHHHcCCE----------------------------EEEEecCCCcC---------
Confidence 136777777776532 211111110 000111 1000
Q ss_pred ccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcE
Q 005009 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (719)
Q Consensus 578 ~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilL 657 (719)
..| .+.+++.+.+. ...++.+|++ + ...|...+ ++++.++|++||+++
T Consensus 104 --~~d------------------~~~l~~~i~~~----~~~~t~~v~~--~--~~~G~~~~----~~~i~~l~~~~~~~l 151 (380)
T TIGR03588 104 --NID------------------EDALEKKLAAA----KGKLPKAIVP--V--DFAGKSVD----MQAIAALAKKHGLKI 151 (380)
T ss_pred --CcC------------------HHHHHHHhhcc----cCCCceEEEE--e--CCCCccCC----HHHHHHHHHHcCCEE
Confidence 001 25566666521 1124445552 2 22355544 899999999999999
Q ss_pred EEeccccCccccCccccccccCC--Ccceeeeh----hccCCCccchheeEeC-HHHHhh
Q 005009 658 IFDEVFTGFWRLGVETTADLLGC--VPDIACYG----KLLTGGVIPLAATLAT-NAVFDS 710 (719)
Q Consensus 658 I~DEVqTGfGRtG~~~a~e~~gv--~PDIvtlg----K~LggG~~Plsavl~~-~~i~~~ 710 (719)
|.|++|+ +|-+ +.-...|. --|+++++ |.++.| ..|++++. +++++.
T Consensus 152 I~D~a~a-~g~~---~~~~~~g~~~~~d~~~~S~~~~K~~~~~--~GG~v~~~~~~~~~~ 205 (380)
T TIGR03588 152 IEDASHA-LGAE---YGGKPVGNCRYADATVFSFHPVKIITTA--EGGAVTTNDEELAER 205 (380)
T ss_pred EEECCCc-ccCc---cCCEeCCCccccceEEEecCCCCccccc--CceEEEECCHHHHHH
Confidence 9999997 4321 22223343 45999877 888654 34455554 555553
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00015 Score=79.60 Aligned_cols=205 Identities=13% Similarity=0.035 Sum_probs=111.2
Q ss_pred CHHHHHHHHHhhhhc-ccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhcccccccccc
Q 005009 418 QIELARDMGYTAARF-GHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496 (719)
Q Consensus 418 hP~V~~Av~~q~~~~-~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~ 496 (719)
+|.+.+|+....... +.........+...++.+.|+++++.+ .+.++++++|++|+..++..+ +......
T Consensus 33 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~~~~~~g~~~~~~~~~~~~-~~~~~~~------- 103 (373)
T TIGR03812 33 HPIAVKAYDMFIETNLGDPGLFPGTKKIEEEVVGSLGNLLHLP-DAYGYIVSGGTEANIQAVRAA-KNLAREE------- 103 (373)
T ss_pred hHHHHHHHHHHhhcCCCCcccCccHHHHHHHHHHHHHHHhCCC-CCCeEEeccHHHHHHHHHHHH-HHHHhcc-------
Confidence 888888887765432 111100112344578888888888743 245788999999999998876 3321110
Q ss_pred CCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccc
Q 005009 497 GKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHK 576 (719)
Q Consensus 497 ~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~ 576 (719)
.....|+..+.+|.+ ...+....|.. ...++.+..+
T Consensus 104 -------~~g~~vl~~~~~h~~-~~~~~~~~G~~----------------------------~~~v~~~~~~-------- 139 (373)
T TIGR03812 104 -------KRTPNIIVPESAHFS-FEKAAEMLGLE----------------------------LRYAPLDEDY-------- 139 (373)
T ss_pred -------CCCcEEEECCcchHH-HHHHHHHcCCe----------------------------EEEEeeCCCC--------
Confidence 011356666655543 11111111100 0111111000
Q ss_pred cccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCc
Q 005009 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656 (719)
Q Consensus 577 ~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gil 656 (719)
..| .+.+++.+.+ ..++.+++.|. ...|.+.+ +++|.++|+++|++
T Consensus 140 ---~~d------------------~~~l~~~l~~-------~~~~vv~~~~~--~~tG~~~~----~~~i~~l~~~~~~~ 185 (373)
T TIGR03812 140 ---TVD------------------VKDVEDLIDD-------NTIGIVGIAGT--TELGQIDD----IEELSKIALENGIY 185 (373)
T ss_pred ---CcC------------------HHHHHHHHhh-------CcEEEEEECCC--CCCCccCC----HHHHHHHHHHcCCe
Confidence 001 2556666652 23556667663 55688777 99999999999999
Q ss_pred EEEeccccCccccC--cc-ccccccCC---Ccceeee--hhccCCCccchheeE-eCHHHHhhh
Q 005009 657 VIFDEVFTGFWRLG--VE-TTADLLGC---VPDIACY--GKLLTGGVIPLAATL-ATNAVFDSF 711 (719)
Q Consensus 657 LI~DEVqTGfGRtG--~~-~a~e~~gv---~PDIvtl--gK~LggG~~Plsavl-~~~~i~~~~ 711 (719)
+|+||+|.++ -.+ .+ .......+ ..|.+++ -|-+.++ .|.|+++ .++++.+.+
T Consensus 186 livD~a~~~~-~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~-~~~G~~~~~~~~~~~~l 247 (373)
T TIGR03812 186 LHVDAAFGGF-VIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSP-IPAGGILFRSKSYLKYL 247 (373)
T ss_pred EEEEcCchhH-HHHHHhcCCCCCCccccCCCCCEEEECccccCCCc-CCceEEEEeCHHHHhhh
Confidence 9999999754 111 00 00001111 2355543 3733334 4676665 577777665
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00018 Score=80.04 Aligned_cols=92 Identities=12% Similarity=0.003 Sum_probs=57.0
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccc-cCccccCccccccccCC
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVF-TGFWRLGVETTADLLGC 680 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVq-TGfGRtG~~~a~e~~gv 680 (719)
+.+++.+.+ ...-..++..|. .+ ...+ +++|.++|++||+++|+||+| .|+--.|... ..+.
T Consensus 151 ~~l~~~i~~------~~~~~v~~~~~~-~~---~~~~----~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~--~~~~- 213 (402)
T cd00378 151 DALEKMALE------FKPKLIVAGASA-YP---RPID----FKRFREIADEVGAYLLVDMAHVAGLVAGGVFP--NPLP- 213 (402)
T ss_pred HHHHHHHHh------CCCCEEEecCcc-cC---CCcC----HHHHHHHHHhcCCEEEEEccchhhhhhcccCC--Cccc-
Confidence 456666642 112233445675 43 3333 889999999999999999997 4432223211 1111
Q ss_pred Cccee--eehhccCCCccchheeEeCH-HHHhhhc
Q 005009 681 VPDIA--CYGKLLTGGVIPLAATLATN-AVFDSFV 712 (719)
Q Consensus 681 ~PDIv--tlgK~LggG~~Plsavl~~~-~i~~~~~ 712 (719)
..|++ +++|+++ | .+.|++++++ ++.+.+.
T Consensus 214 ~~dv~~~s~sK~l~-G-~~gg~i~~~~~~~~~~l~ 246 (402)
T cd00378 214 GADVVTTTTHKTLR-G-PRGGLILTRKGELAKKIN 246 (402)
T ss_pred CCcEEEeccccCCC-C-CCceEEEeccHHHHHHHH
Confidence 35876 6789994 4 4677788877 7776653
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.7e-05 Score=76.25 Aligned_cols=68 Identities=22% Similarity=0.175 Sum_probs=46.2
Q ss_pred CcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHhCC--CcEEEEEEccCCCCCHH
Q 005009 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRG--YDVVAVVFEDHGLVNEV 295 (719)
Q Consensus 221 ~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~--~~v~gvi~N~~~~~~~~ 295 (719)
+|++||++.+|+... ..-+.. .---+|+|.....-.+..+...++.++..+ .+++++|+|++...+..
T Consensus 95 yD~iiiD~~~~~~~~------~~~~l~-~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~~~~ 164 (195)
T PF01656_consen 95 YDYIIIDTPPGLSDP------VRNALA-AADYVIVPIEPDPSSIEGAERLIELLKRLGKKLKIIGVVINRVDPGNES 164 (195)
T ss_dssp SSEEEEEECSSSSHH------HHHHHH-TSSEEEEEEESSHHHHHHHHHHHHHHHHHTHTEEEEEEEEEEETSCCHH
T ss_pred ccceeecccccccHH------HHHHHH-hCceeeeecCCcHHHHHHHHHHHHHHHHhccccceEEEEEeeeCCCccc
Confidence 999999997765444 212222 222256666666666888888888888766 56899999999555433
|
These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A .... |
| >TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0002 Score=75.80 Aligned_cols=63 Identities=21% Similarity=0.091 Sum_probs=47.9
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEcc
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFED 288 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~ 288 (719)
.||+|||.+. |........-++...+ -||+|+..+.-++..+..+++.++..|.+++|+|+|+
T Consensus 212 ~yD~ViiD~p-----p~~~~~d~~~~~~~~d-~vilV~~~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~ 274 (274)
T TIGR03029 212 DYDVVIVDTP-----SAEHSSDAQIVATRAR-GTLIVSRVNETRLHELTSLKEHLSGVGVRVVGAVLNQ 274 (274)
T ss_pred cCCEEEEeCC-----CcccccHHHHHHHhCC-eEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 3999999993 3222122333444443 6788999888899999999999999999999999996
|
The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF). |
| >cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring | Back alignment and domain information |
|---|
Probab=97.96 E-value=8.5e-05 Score=80.97 Aligned_cols=92 Identities=17% Similarity=0.243 Sum_probs=64.0
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChH---HHHHHHHHHHHhCC--CcEEEEEEccCC-CCC
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGI---SGTISAYESLKLRG--YDVVAVVFEDHG-LVN 293 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i---~~~~~~~~~l~~~~--~~v~gvi~N~~~-~~~ 293 (719)
.+|++||-..|++.++. ....+++.+.--||+|.....-++ +.+..+++.++..| .++.|+|+|+.. ...
T Consensus 147 ~~DyVliD~~gdv~~gg----f~l~i~~~~ad~VIVVt~pe~~si~~A~~v~kai~~~~~lg~~~~i~GlViNr~d~~~~ 222 (329)
T cd02033 147 DFDYVLLDFLGDVVCGG----FGLPIARDMAQKVIVVGSNDLQSLYVANNVCNAVEYFRKLGGNVGVAGMVINKDDGTGE 222 (329)
T ss_pred cCCEEEEecCCcceecc----ccchhhhcCCceEEEeCCchHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCcCCcch
Confidence 38999999988665321 123333334335788887777777 45677888888764 678999999984 333
Q ss_pred HHHHHHhhcCCCcEEe-cCCCCCCC
Q 005009 294 EVPLMSYLRNRVPVLV-LPPLPQDS 317 (719)
Q Consensus 294 ~~~l~~~~~~~~pvlg-lP~~~~~~ 317 (719)
.+.+.+.+ ++|++| ||+.+...
T Consensus 223 ie~~ae~l--gi~vLg~IP~D~~V~ 245 (329)
T cd02033 223 AQAFAAHA--GIPILAAIPADEELR 245 (329)
T ss_pred HHHHHHHh--CCCEEEECCCCHHHH
Confidence 45555556 999999 99987643
|
This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster. |
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=8.1e-05 Score=83.40 Aligned_cols=170 Identities=14% Similarity=0.071 Sum_probs=105.8
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
+.++...+|.++|+++.+. +.++.++||++|+..++...+ +.| ..||... .+||.
T Consensus 61 ~~~p~~~~Le~~iA~~~g~---~~~l~~~sG~~Ai~~al~~ll-----~~G----------------d~Vl~~~-~~y~~ 115 (400)
T PRK06234 61 LGNPTSTEVENKLALLEGG---EAAVVAASGMGAISSSLWSAL-----KAG----------------DHVVASD-TLYGC 115 (400)
T ss_pred CCCccHHHHHHHHHHHhCC---CcEEEEcCHHHHHHHHHHHHh-----CCC----------------CEEEEec-Cccch
Confidence 3456678999999999873 578999999999988876441 111 2566555 45554
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
+.......- .. . |.....++ ..|
T Consensus 116 ~~~~~~~~~-~~------------~-------------G~~v~~vd--------------~~d----------------- 138 (400)
T PRK06234 116 TFALLNHGL-TR------------Y-------------GVEVTFVD--------------TSN----------------- 138 (400)
T ss_pred HHHHHHHHH-hh------------C-------------CeEEEEEC--------------CCC-----------------
Confidence 443321100 00 0 00000000 011
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhc--CCcEEEeccccCccccCccccccc
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR--KIPVIFDEVFTGFWRLGVETTADL 677 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~--gilLI~DEVqTGfGRtG~~~a~e~ 677 (719)
.+.+++.+. .+..+|++|.. ..-.|.+.+ +++|.++|++| |+++|+||++.. +-.+..
T Consensus 139 -~e~l~~~i~--------~~tklI~iesP-~NPtG~v~d----l~~I~~la~~~~~~i~livDea~~~-~~~~~~----- 198 (400)
T PRK06234 139 -LEEVRNALK--------ANTKVVYLETP-ANPTLKVTD----IKAISNIAHENNKECLVFVDNTFCT-PYIQRP----- 198 (400)
T ss_pred -HHHHHHHhc--------cCCeEEEEECC-CCCCCCcCC----HHHHHHHHHhcCCCCEEEEECCCCc-hhcCCc-----
Confidence 244566654 24568888975 677787776 99999999997 999999999852 222221
Q ss_pred cCCCccee--eehhccCC-Cccch-heeEeCHHHHhhhc
Q 005009 678 LGCVPDIA--CYGKLLTG-GVIPL-AATLATNAVFDSFV 712 (719)
Q Consensus 678 ~gv~PDIv--tlgK~Lgg-G~~Pl-savl~~~~i~~~~~ 712 (719)
.+...||+ .++|.++| | -.+ |++++++++++.+.
T Consensus 199 l~~g~Divv~S~sK~l~g~g-~~~gG~v~~~~~~~~~l~ 236 (400)
T PRK06234 199 LQLGADVVVHSATKYLNGHG-DVIAGFVVGKEEFINQVK 236 (400)
T ss_pred hhhCCcEEEeeccccccCCC-CceeEEEEecHHHHHHHH
Confidence 22356887 46899976 4 233 67888888877653
|
|
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00024 Score=79.01 Aligned_cols=214 Identities=9% Similarity=-0.014 Sum_probs=119.8
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcc-cccCCCC-----CChHHHHHHHHHHhccCCCCCCeEEEeCChHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG-HVMFPEN-----VYEPALECAELLLQGVGKGWASRAYFSDNGSTA 473 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~-~~~~~~~-----~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA 473 (719)
.|||.. ..|-- .+.+.+|+.+.+.... ....... ..+...++-+.|+++++...-+.++|++++++|
T Consensus 20 ~yld~~------~~~~~-p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~ 92 (403)
T TIGR01979 20 VYLDSA------ATSQK-PQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASDEEIVFTRGTTES 92 (403)
T ss_pred EEEeCc------cccCC-CHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHH
Confidence 688844 35666 7889999887665421 1110000 112344666778887764312479999999999
Q ss_pred HHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcc
Q 005009 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (719)
Q Consensus 474 ~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~ 553 (719)
+..++........ . ....||.....|++.......+... .+. .
T Consensus 93 l~~~~~~~~~~~~-~----------------~g~~vl~~~~~~~s~~~~~~~~~~~--------------~g~--~---- 135 (403)
T TIGR01979 93 INLVAYSWGDSNL-K----------------AGDEIVISEMEHHANIVPWQLLAER--------------TGA--T---- 135 (403)
T ss_pred HHHHHHHhhhhcC-C----------------CCCEEEECcchhhHHHHHHHHHHHh--------------cCc--E----
Confidence 9888876511111 1 1235666666555422111011000 000 0
Q ss_pred cccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 005009 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (719)
Q Consensus 554 ~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~g 633 (719)
...++....+ . -+ .+.+++.+. +++.+|++.-+ +...
T Consensus 136 -----~~~v~~~~~~-------------~--------~~--------~~~l~~~i~--------~~~~lv~~~~~-~~~t 172 (403)
T TIGR01979 136 -----LKFIPLDDDG-------------T--------LD--------LDDLEKLLT--------EKTKLVAITHV-SNVL 172 (403)
T ss_pred -----EEEEecCCCC-------------C--------CC--------HHHHHHHhc--------cCCeEEEEEcc-cccc
Confidence 0011111000 0 00 245565554 24556666655 7778
Q ss_pred ccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceee--ehhccCCCccchheeEeCHHHHhhh
Q 005009 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 634 G~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvt--lgK~LggG~~Plsavl~~~~i~~~~ 711 (719)
|...+ +++|.++|++||+++|+|++|. +|-. .+... ...+|+++ +.|.+|. .-+|++.+++++.+.+
T Consensus 173 G~~~~----~~~i~~~~~~~~~~~ivD~a~~-~g~~--~~~~~--~~~~d~~~~s~~K~~gp--~G~g~l~~~~~~~~~~ 241 (403)
T TIGR01979 173 GTVNP----VEEIAKLAHQVGAKVLVDGAQA-VPHM--PVDVQ--ALDCDFYVFSGHKMYGP--TGIGVLYGKEELLEQM 241 (403)
T ss_pred cccCC----HHHHHHHHHHcCCEEEEEchhh-cCcc--ccCcc--ccCCCEEEEecccccCC--CCceEEEEchHHHhcC
Confidence 88887 8999999999999999999995 4321 11122 23579875 4597652 1267888998887654
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00015 Score=79.64 Aligned_cols=74 Identities=12% Similarity=0.088 Sum_probs=53.3
Q ss_pred ccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee--eehhccCCCccchheeEeCHHH
Q 005009 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAV 707 (719)
Q Consensus 630 qg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlgK~LggG~~Plsavl~~~~i 707 (719)
....|...+ +++|.++|+++|+++|+|.+| +||... +.... ..+|++ ++.|.+.|. .-+|.+++++++
T Consensus 141 ~~~tG~~~~----~~~i~~l~~~~~~~livDa~~-~~g~~~--~~~~~--~~~d~~v~s~~K~l~g~-~G~G~l~~~~~~ 210 (368)
T PRK13479 141 ETTTGILNP----LDEIAAVAKRHGKRLIVDAMS-SFGAIP--IDIAE--LGIDALISSANKCIEGV-PGFGFVIARRSE 210 (368)
T ss_pred cCccccccC----HHHHHHHHHHcCCEEEEEccc-ccCCcc--ccccc--cCceEEEecCccccccC-CCceEEEECHHH
Confidence 345677777 899999999999999999888 465322 22222 247876 578988653 225889999998
Q ss_pred HhhhcC
Q 005009 708 FDSFVG 713 (719)
Q Consensus 708 ~~~~~~ 713 (719)
.+.+..
T Consensus 211 ~~~~~~ 216 (368)
T PRK13479 211 LEACKG 216 (368)
T ss_pred HHHhhc
Confidence 877654
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=6.9e-05 Score=83.95 Aligned_cols=169 Identities=15% Similarity=0.084 Sum_probs=105.5
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
..++...+|+++|+++.+. +.++.++||++|+..++...+ +.| ..||+....|++.
T Consensus 61 ~~~p~~~~le~~lA~l~g~---~~~i~~ssG~~Ai~~~l~all-----~~G----------------D~Vi~~~~~y~~~ 116 (398)
T PRK08249 61 NTNPTVQAFEEKVRILEGA---EAATAFSTGMAAISNTLYTFL-----KPG----------------DRVVSIKDTYGGT 116 (398)
T ss_pred CCChHHHHHHHHHHHHhCC---CeEEEeCChHHHHHHHHHHhc-----CCC----------------CEEEEcCCchHHH
Confidence 4577888999999999873 578899999999888876541 111 3688888887662
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
...+.-. .. . .+ .....++ ..|
T Consensus 117 -~~~~~~~-~~---~---------~G-------------i~v~~vd--------------~~d----------------- 138 (398)
T PRK08249 117 -NKIFTEF-LP---R---------MG-------------VDVTLCE--------------TGD----------------- 138 (398)
T ss_pred -HHHHHHH-Hh---h---------CC-------------eEEEEcC--------------CCC-----------------
Confidence 1111100 00 0 00 0000000 011
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccC
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~g 679 (719)
.+.+++.+. .+..+|++|-. ..-.|.+.+ +++|.++|++||+++|+||++..+ -.+. ...
T Consensus 139 -~e~l~~~i~--------~~tklV~ie~p-~NPtg~v~d----l~~I~~la~~~gi~livD~t~a~~-~~~~-----~l~ 198 (398)
T PRK08249 139 -HEQIEAEIA--------KGCDLLYLETP-TNPTLKIVD----IERLAAAAKKVGALVVVDNTFATP-INQN-----PLA 198 (398)
T ss_pred -HHHHHHhcC--------CCCeEEEEECC-CCCCCccCC----HHHHHHHHHHcCCEEEEECCcCcc-ccCC-----chh
Confidence 244555554 24568888865 566787776 899999999999999999998632 1111 122
Q ss_pred CCccee--eehhccCC-Cccch-heeEeCHHHHhhh
Q 005009 680 CVPDIA--CYGKLLTG-GVIPL-AATLATNAVFDSF 711 (719)
Q Consensus 680 v~PDIv--tlgK~Lgg-G~~Pl-savl~~~~i~~~~ 711 (719)
...|++ +++|.++| | --+ |++++++++++.+
T Consensus 199 ~~~Divv~S~sK~l~g~~-~~~gG~vv~~~~l~~~l 233 (398)
T PRK08249 199 LGADLVIHSATKFLSGHA-DALGGVVCGSKELMEQV 233 (398)
T ss_pred hCCCEEeccCceecCCCC-CceEEEEECCHHHHHHH
Confidence 346776 57899986 3 223 5566777777654
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00011 Score=82.51 Aligned_cols=167 Identities=17% Similarity=0.093 Sum_probs=103.0
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
+.++...+|+++|+++.+. +.+++++||+.|+..++.... ..| ..||.... .||.
T Consensus 67 ~~~p~~~~le~~lA~l~g~---~~al~~~sG~~Ai~~~l~all-----~~G----------------d~Vl~~~~-~~~~ 121 (403)
T PRK07810 67 YGNPTVSMFEERLRLIEGA---EACFATASGMSAVFTALGALL-----GAG----------------DRLVAARS-LFGS 121 (403)
T ss_pred CCCchHHHHHHHHHHHhCC---CcEEEECChHHHHHHHHHHHh-----CCC----------------CEEEEccC-Ccch
Confidence 4567788999999999873 589999999999999886541 111 25665554 4554
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
+.......- ...+ .....++ ..|
T Consensus 122 t~~~~~~~~-------------~~~G-------------~~v~~vd--------------~~d----------------- 144 (403)
T PRK07810 122 CFVVCNEIL-------------PRWG-------------VETVFVD--------------GED----------------- 144 (403)
T ss_pred HHHHHHHHH-------------HHcC-------------cEEEEEC--------------CCC-----------------
Confidence 443221100 0000 0000000 011
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccC
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~g 679 (719)
.+.+++.+. .+..+|++|.. ..-.|.+.. +++|.++|+++|+++|+||++. .+-..... .+|
T Consensus 145 -~~~l~~ai~--------~~tklV~~esp-~Nptg~v~d----l~~I~~la~~~g~~vivD~a~a-~~~~~~~~---~~g 206 (403)
T PRK07810 145 -LSQWEEALS--------VPTQAVFFETP-SNPMQSLVD----IAAVSELAHAAGAKVVLDNVFA-TPLLQRGL---PLG 206 (403)
T ss_pred -HHHHHHhcC--------cCceEEEEECC-CCCCCeecC----HHHHHHHHHHcCCEEEEECCCC-ccccCChh---hcC
Confidence 244666664 24678999976 677787776 9999999999999999999985 21111111 223
Q ss_pred CCccee--eehhccCC-Cccch-heeEeCHHHHh
Q 005009 680 CVPDIA--CYGKLLTG-GVIPL-AATLATNAVFD 709 (719)
Q Consensus 680 v~PDIv--tlgK~Lgg-G~~Pl-savl~~~~i~~ 709 (719)
.|++ .+.|.++| | -.+ |+++++++...
T Consensus 207 --aDivv~S~tK~l~g~g-~~~gG~v~~~~~~~~ 237 (403)
T PRK07810 207 --ADVVVYSGTKHIDGQG-RVLGGAILGDREYID 237 (403)
T ss_pred --CcEEEccCCceecCCc-CceeEEEEeChHHHH
Confidence 5887 47899975 4 234 56777776543
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=97.92 E-value=8.7e-05 Score=82.63 Aligned_cols=81 Identities=17% Similarity=0.022 Sum_probs=53.7
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeee--hhccCCCcc
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVI 696 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtl--gK~LggG~~ 696 (719)
++.+|++|-. ..-.|.+.+ +++|.++|++||+++|+|++++.. -.+. -.+...|++++ .|.++|.--
T Consensus 134 ~t~lV~lesP-~Nptg~~~d----i~~I~~la~~~gi~vivD~t~a~~-~~~~-----p~~~gaDivv~S~tK~l~g~~d 202 (380)
T PRK06176 134 NTKALYLETP-SNPLLKITD----LAQCASVAKDHGLLTIVDNTFATP-YYQN-----PLLLGADIVVHSGTKYLGGHSD 202 (380)
T ss_pred CceEEEEECC-CCCCceecC----HHHHHHHHHHcCCEEEEECCcccc-ccCC-----ccccCCCEEEecCceeccCCcc
Confidence 5678999865 566677666 889999999999999999999632 1122 12345688865 599976201
Q ss_pred chh-eeEeC-HHHHhh
Q 005009 697 PLA-ATLAT-NAVFDS 710 (719)
Q Consensus 697 Pls-avl~~-~~i~~~ 710 (719)
.++ +++++ +++++.
T Consensus 203 ~~gG~vv~~~~~~~~~ 218 (380)
T PRK06176 203 VVAGLVTTNNEALAQE 218 (380)
T ss_pred ceeeEEEecHHHHHHH
Confidence 233 35553 455443
|
|
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=97.91 E-value=8.4e-05 Score=80.53 Aligned_cols=76 Identities=13% Similarity=-0.032 Sum_probs=46.2
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC-Cccee--eehhccCCCccc
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIA--CYGKLLTGGVIP 697 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv-~PDIv--tlgK~LggG~~P 697 (719)
..++..| ....|.+.+ +++|.++|++||+++|+|+++.++.--.........++ ..|.+ ++.|.++++ ..
T Consensus 151 ~v~~~~~--~~~tG~~~~----~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p-~g 223 (345)
T cd06450 151 MVVATAG--TTDTGAIDP----LEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVP-LG 223 (345)
T ss_pred EEEEecc--cCCCCCCCC----HHHHHHHHHHhCCeEEEechhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCC-cc
Confidence 3344555 355677655 89999999999999999999975421111000001111 35754 678988765 34
Q ss_pred hheeEe
Q 005009 698 LAATLA 703 (719)
Q Consensus 698 lsavl~ 703 (719)
+|.+++
T Consensus 224 ~g~~~~ 229 (345)
T cd06450 224 CSAVLV 229 (345)
T ss_pred hHHHHH
Confidence 554443
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00012 Score=81.78 Aligned_cols=167 Identities=15% Similarity=0.150 Sum_probs=102.8
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
..++...+|+++|+++.+. +.++.++||++|+..++...+ +. ...||.....|++
T Consensus 50 ~~np~~~~lE~~lA~l~g~---~~~l~~~sG~~Ai~~~l~~ll-----~~----------------GD~Vlv~~~~y~~- 104 (385)
T PRK08574 50 EENPTLRPLEEALAKLEGG---VDALAFNSGMAAISTLFFSLL-----KA----------------GDRVVLPMEAYGT- 104 (385)
T ss_pred CCCccHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHHh-----CC----------------CCEEEEcCCCchh-
Confidence 4566788899999999873 577888999999999987552 11 1357776666655
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
+...+.... . .+ . . + .+.+. +
T Consensus 105 ~~~~~~~~~--~-~g-----------~----~----------v----------------~~~~~--------d------- 125 (385)
T PRK08574 105 TLRLLKSLE--K-FG-----------V----K----------V----------------VLAYP--------S------- 125 (385)
T ss_pred HHHHHHHhh--c-cC-----------c----E----------E----------------EEECC--------C-------
Confidence 322221100 0 00 0 0 0 00000 0
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEecccc-CccccCcccccccc
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLL 678 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqT-GfGRtG~~~a~e~~ 678 (719)
.+.+++.+. +.++.+|++|.. ..-.|.+.+ +++|.++|++||+++|+||++. |+ ..... .+
T Consensus 126 -~~~l~~~i~-------~~~tklV~ie~p-~NPtG~v~d----l~~I~~la~~~gi~livD~t~a~~~--~~~~l---~~ 187 (385)
T PRK08574 126 -TEDIIEAIK-------EGRTKLVFIETM-TNPTLKVID----VPEVAKAAKELGAILVVDNTFATPL--LYRPL---RH 187 (385)
T ss_pred -HHHHHHhcC-------ccCceEEEEECC-CCCCCEecC----HHHHHHHHHHcCCEEEEECCCCccc--cCChh---hh
Confidence 134555554 125678889986 777777776 8899999999999999999994 33 11111 12
Q ss_pred CCCccee--eehhccCC-Cccch-heeEe-CHHHHhhh
Q 005009 679 GCVPDIA--CYGKLLTG-GVIPL-AATLA-TNAVFDSF 711 (719)
Q Consensus 679 gv~PDIv--tlgK~Lgg-G~~Pl-savl~-~~~i~~~~ 711 (719)
| .|++ .+.|.++| | -.+ |++++ ++++.+.+
T Consensus 188 G--aDivv~S~sK~l~g~~-d~~gG~vi~~~~~~~~~~ 222 (385)
T PRK08574 188 G--ADFVVHSLTKYIAGHN-DVVGGVAVAWSGEFLEEL 222 (385)
T ss_pred C--CcEEEeeCceeecCCC-CceeEEEEECcHHHHHHH
Confidence 3 4877 57999976 3 233 43444 56666544
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00065 Score=75.46 Aligned_cols=88 Identities=16% Similarity=0.141 Sum_probs=60.7
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc-c-ccccccCCCcc-e--eeehhccC-CC
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-E-TTADLLGCVPD-I--ACYGKLLT-GG 694 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~-~-~a~e~~gv~PD-I--vtlgK~Lg-gG 694 (719)
+.++..| +.=.|.. .+.+-+++|.++|++||+++|+||+...|...+. . ......+..+. | -+|+|.+| .|
T Consensus 170 ~v~l~~P--~NPTG~~-~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~G 246 (389)
T PRK08068 170 LMYLNYP--NNPTGAV-ATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAG 246 (389)
T ss_pred EEEEECC--CCCCCCc-CCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccCCcc
Confidence 4444557 4445664 4788899999999999999999999976644442 1 11122222222 2 37999997 67
Q ss_pred ccchheeEeCHHHHhhhc
Q 005009 695 VIPLAATLATNAVFDSFV 712 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~ 712 (719)
+=+|.+++++++.+.+.
T Consensus 247 -lRiG~~~~~~~l~~~l~ 263 (389)
T PRK08068 247 -WRVAFAVGNESVIEAIN 263 (389)
T ss_pred -ceeEeEecCHHHHHHHH
Confidence 68888999999988764
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0001 Score=80.07 Aligned_cols=87 Identities=17% Similarity=0.201 Sum_probs=63.5
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcc-ee--eehhccC-CCcc
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPD-IA--CYGKLLT-GGVI 696 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PD-Iv--tlgK~Lg-gG~~ 696 (719)
+.++..|- .-.|.. ++.+.+++|.++|++||+++|+||++.+|........ ..+-.++ |+ +++|.+| .| +
T Consensus 128 ~v~i~~p~--NPtG~~-~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~--~~~~~~~~i~~~S~SK~~g~~G-~ 201 (330)
T TIGR01140 128 VLVLCNPN--NPTGRL-IPPETLLALAARLRARGGWLVVDEAFIDFTPDASLAP--QAARFPGLVVLRSLTKFFGLAG-L 201 (330)
T ss_pred EEEEeCCC--CCCCCC-CCHHHHHHHHHHhHhcCCEEEEECcccccCCccchhh--HhccCCCEEEEEecchhhcCch-h
Confidence 55667773 444553 4899999999999999999999999987743222221 1121233 44 8999998 78 7
Q ss_pred chheeEeCHHHHhhhcC
Q 005009 697 PLAATLATNAVFDSFVG 713 (719)
Q Consensus 697 Plsavl~~~~i~~~~~~ 713 (719)
.+|.+++++++++.+..
T Consensus 202 R~G~i~~~~~~~~~l~~ 218 (330)
T TIGR01140 202 RLGFVVAHPALLARLRE 218 (330)
T ss_pred hhhheeCCHHHHHHHHh
Confidence 99999999999888754
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00018 Score=79.61 Aligned_cols=200 Identities=17% Similarity=0.151 Sum_probs=126.5
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccC
Q 005009 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~ 497 (719)
+|+|.+|+.+++-- |.. .-......++-++|...++...-+-+++..||+-|+|+|+.-.. .+
T Consensus 17 ~~~V~~am~~~~~~--h~s--~~F~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl~-----~p-------- 79 (383)
T COG0075 17 PPRVLLAMARPMVG--HRS--PDFVGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASLV-----EP-------- 79 (383)
T ss_pred CHHHHHHhcCCCCC--CCC--HHHHHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhcc-----CC--------
Confidence 67777776655422 211 11245566777777777764322456777999999999998772 12
Q ss_pred CCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhccccccc
Q 005009 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKD 577 (719)
Q Consensus 498 ~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~ 577 (719)
..+++.+.++.-|.-+.=+.-.... ....+..+ |
T Consensus 80 --------gdkVLv~~nG~FG~R~~~ia~~~g~---------------------------~v~~~~~~--w--------- 113 (383)
T COG0075 80 --------GDKVLVVVNGKFGERFAEIAERYGA---------------------------EVVVLEVE--W--------- 113 (383)
T ss_pred --------CCeEEEEeCChHHHHHHHHHHHhCC---------------------------ceEEEeCC--C---------
Confidence 2488888888877544332211100 00111111 0
Q ss_pred ccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcE
Q 005009 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (719)
Q Consensus 578 ~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilL 657 (719)
+. .-+ .+.+++.|++. ..-+-++.+-.|.- .|+.-| ++++.++|++||+++
T Consensus 114 ---g~-------~v~--------p~~v~~~L~~~---~~~~~V~~vH~ETS----TGvlnp----l~~I~~~~k~~g~l~ 164 (383)
T COG0075 114 ---GE-------AVD--------PEEVEEALDKD---PDIKAVAVVHNETS----TGVLNP----LKEIAKAAKEHGALL 164 (383)
T ss_pred ---CC-------CCC--------HHHHHHHHhcC---CCccEEEEEeccCc----ccccCc----HHHHHHHHHHcCCEE
Confidence 00 000 25677777731 12234666667763 578888 999999999999999
Q ss_pred EEeccccCccccCccccccccCCCcceeeehhccCC--CccchheeEeCHHHHhhhcCCC
Q 005009 658 IFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG--GVIPLAATLATNAVFDSFVGDS 715 (719)
Q Consensus 658 I~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lgg--G~~Plsavl~~~~i~~~~~~~~ 715 (719)
|+|=|-+ +| |..+-.+.|||.-=|.--=|+|++ | +|.+..+++.++.+.+..
T Consensus 165 iVDaVsS-~G--g~~~~vd~wgiDv~itgSQK~l~~PPG---la~v~~S~~a~e~~~~~~ 218 (383)
T COG0075 165 IVDAVSS-LG--GEPLKVDEWGIDVAITGSQKALGAPPG---LAFVAVSERALEAIEERK 218 (383)
T ss_pred EEEeccc-CC--CcccchhhcCccEEEecCchhccCCCc---cceeEECHHHHHHHhcCC
Confidence 9999986 43 556777777764333345699987 7 588999999999887654
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00064 Score=76.66 Aligned_cols=97 Identities=16% Similarity=0.128 Sum_probs=65.3
Q ss_pred HHHHHHHhcCCCCCCCCcEEE-EEE-ccccccCCccccCCHHHHHHHHHHHHhc-CCcEEEeccccCccccCcccccccc
Q 005009 602 SYISQNLLQNPGLKVSGCIGA-LII-EPVVHAAGGMHMVDPLFQRILVKECQNR-KIPVIFDEVFTGFWRLGVETTADLL 678 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAA-vIv-EPViqg~gG~~~pp~~fl~~Lr~Lc~k~-gilLI~DEVqTGfGRtG~~~a~e~~ 678 (719)
+.+++.+.. ++.+ +++ -| +.=.|... +.+.+++|.++|++| ++++|.||+..-|...+..-...
T Consensus 202 ~~l~~~~~~--------~~k~i~~~p~p--~NPTG~~~-s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~~~~~-- 268 (431)
T PRK15481 202 EKLERALAQ--------GARAVILTPRA--HNPTGCSL-SARRAAALRNLLARYPQVLVIIDDHFALLSSSPYHSVIP-- 268 (431)
T ss_pred HHHHHHHhc--------CCCEEEECCCC--CCCCCccC-CHHHHHHHHHHHHhcCCceEEecCchhhhccCCCCCCCc--
Confidence 456666642 2333 444 44 44456655 789999999999999 99999999997663222110010
Q ss_pred CCCccee---eehhccCCCccchheeEeCHHHHhhhc
Q 005009 679 GCVPDIA---CYGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 679 gv~PDIv---tlgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
...+.++ +|||.++.| +-+|.+++.+++.+.+.
T Consensus 269 ~~~~~vi~~~SfSK~~~~G-lRiG~~i~~~~~~~~~~ 304 (431)
T PRK15481 269 QTTQRWALIRSVSKALGPD-LRLAFVASDSATSARLR 304 (431)
T ss_pred CCCCCEEEEeeeccccCCC-ceeEEEeCCHHHHHHHH
Confidence 1123333 799999999 79999999998887764
|
|
| >TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00039 Score=70.69 Aligned_cols=75 Identities=19% Similarity=0.139 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHH
Q 005009 194 DSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYES 273 (719)
Q Consensus 194 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~ 273 (719)
.+.+.+.+..+.++ ..+|+|||.+..++.. .....++...+ -||+|+....-++..+..+++.
T Consensus 133 ~~~l~~~l~~l~~~-----------y~~D~IiiD~pp~~~~-----~~~~~l~~~aD-~viiV~~~~~~~~~~~~~~~~~ 195 (207)
T TIGR03018 133 SQRMRSLLHELARR-----------YPDRIIIIDTPPLLVF-----SEARALARLVG-QIVLVVEEGRTTQEAVKEALSA 195 (207)
T ss_pred cHHHHHHHHHHHhh-----------CCCCEEEEECCCCcch-----hHHHHHHHhCC-EEEEEEECCCCCHHHHHHHHHH
Confidence 34556666665543 0139999999543322 23444555554 5778888888889999999999
Q ss_pred HHhCCCcEEEEEEc
Q 005009 274 LKLRGYDVVAVVFE 287 (719)
Q Consensus 274 l~~~~~~v~gvi~N 287 (719)
++ +.+++|+|+|
T Consensus 196 l~--~~~~~G~v~N 207 (207)
T TIGR03018 196 LE--SCKVLGVVLN 207 (207)
T ss_pred hc--CCCeEEEEeC
Confidence 88 7899999998
|
Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins. |
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00074 Score=74.90 Aligned_cols=88 Identities=19% Similarity=0.241 Sum_probs=59.9
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc--cccccCC-Cccee--eehhccC-CC
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET--TADLLGC-VPDIA--CYGKLLT-GG 694 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~--a~e~~gv-~PDIv--tlgK~Lg-gG 694 (719)
+.+|.-| +.-.|.+. +.+-+++|.++|++|++++|+||++..|--.+..+ ..+..+. ..+|+ +++|.+| .|
T Consensus 162 ~v~l~~p--~NPtG~~~-s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G 238 (387)
T PRK08912 162 AVLLNNP--LNPAGKVF-PREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTG 238 (387)
T ss_pred EEEEeCC--CCCcCccc-CHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhccCcC
Confidence 3455556 45556554 57889999999999999999999996542222111 0111122 12344 6899999 88
Q ss_pred ccchheeEeCHHHHhhhc
Q 005009 695 VIPLAATLATNAVFDSFV 712 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~ 712 (719)
+-+|.+++++++.+.+.
T Consensus 239 -lRiG~~~~~~~~~~~l~ 255 (387)
T PRK08912 239 -WKVGFVCAAPPLLRVLA 255 (387)
T ss_pred -ceeEEEecCHHHHHHHH
Confidence 68899999999888763
|
|
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0001 Score=82.44 Aligned_cols=198 Identities=16% Similarity=0.039 Sum_probs=113.4
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccC
Q 005009 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~ 497 (719)
+++|.+|+.+.+.. |. .....+...++.++|.++++.+..+.+++.+||++|++.++...+ +.
T Consensus 21 ~~~V~~a~~~~~~~--~~--~~~~~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~~-----~~-------- 83 (401)
T PLN02409 21 PERVLRAMNRPNED--HR--SPAFPALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNTL-----SP-------- 83 (401)
T ss_pred CHHHHHHhcCCCCC--CC--CHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhcC-----CC--------
Confidence 66777776543311 11 111234556777777777664323468999999999999887551 11
Q ss_pred CCccccCcceEEEEEeCCcccCcccccc-ccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccc
Q 005009 498 KDTTEKCIELKVLALKGSYHGDTLGAME-AQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHK 576 (719)
Q Consensus 498 ~~~~~~~~r~kII~~~~syHG~t~gals-lt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~ 576 (719)
..+||....+|.+....-+. ..|. ....++.+...
T Consensus 84 --------Gd~Vlv~~~~~~~~~~~~~~~~~g~----------------------------~v~~v~~~~~~-------- 119 (401)
T PLN02409 84 --------GDKVVSFRIGQFSLLWIDQMQRLNF----------------------------DVDVVESPWGQ-------- 119 (401)
T ss_pred --------CCEEEEeCCCchhHHHHHHHHHcCC----------------------------ceEEEECCCCC--------
Confidence 23788888777664321110 0000 00111111000
Q ss_pred cccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHH--HHhcC
Q 005009 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKE--CQNRK 654 (719)
Q Consensus 577 ~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~L--c~k~g 654 (719)
.-+ .+.+++.+.+ ....++.+|++--. ....|.+.+ ++++.++ |+++|
T Consensus 120 -------------~~~--------~~~l~~~l~~----~~~~~~k~v~~~~~-~~~tG~~~~----~~~i~~l~~~~~~g 169 (401)
T PLN02409 120 -------------GAD--------LDILKSKLRQ----DTNHKIKAVCVVHN-ETSTGVTND----LAGVRKLLDCAQHP 169 (401)
T ss_pred -------------CCC--------HHHHHHHHhh----CcCCCccEEEEEee-cccccccCC----HHHHHHHHhhhccC
Confidence 000 2456666652 00024555555443 445688887 8888888 99999
Q ss_pred CcEEEeccccCccccCccccccccCCCccee--eehhccCCCccchheeEeCHHHHhhhc
Q 005009 655 IPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 655 ilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
+++|+|++|+ +|. .-+..+. ...|++ ...|.+++. .=+|.+++++++.+.+.
T Consensus 170 ~~~vvD~v~s-~g~--~~id~~~--~~~D~~~~s~~K~l~~P-~G~G~l~~~~~~~~~~~ 223 (401)
T PLN02409 170 ALLLVDGVSS-IGA--LDFRMDE--WGVDVALTGSQKALSLP-TGLGIVCASPKALEASK 223 (401)
T ss_pred cEEEEEcccc-cCC--ccccccc--cCccEEEEcCccccCcC-CCcceeEECHHHHHHHh
Confidence 9999999996 431 1122222 245776 458999764 12788999999887654
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00015 Score=81.03 Aligned_cols=169 Identities=13% Similarity=0.084 Sum_probs=101.1
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
+.++...+|.++|+++.+. +....++||++|+..++.... .. ...||+....|.+.
T Consensus 58 ~~~p~~~~Le~~lA~~~g~---~~~i~~~sG~~Ai~~~l~all-----~~----------------Gd~Vl~~~~~y~~t 113 (388)
T PRK07811 58 TGNPTRTALEEQLAALEGG---AYGRAFSSGMAATDCLLRAVL-----RP----------------GDHIVIPNDAYGGT 113 (388)
T ss_pred CCCccHHHHHHHHHHHhCC---CceEEeCCHHHHHHHHHHHHh-----CC----------------CCEEEEcCCCchHH
Confidence 3456678999999998874 456677899999999887652 11 13678777777552
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
...+... .+. .+. ... +.+. .|
T Consensus 114 -~~~~~~~----~~~---------~gi-------------~~~-----------------~~d~-------~d------- 135 (388)
T PRK07811 114 -FRLIDKV----FTR---------WGV-------------EYT-----------------PVDL-------SD------- 135 (388)
T ss_pred -HHHHHHh----CcC---------CCe-------------EEE-----------------EeCC-------CC-------
Confidence 2111110 000 000 000 1110 00
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccC
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~g 679 (719)
.+.+++.+. .++.+|++|-. ..-.|.... +++|.++|++||+++|+||++.. +-.+.. .+
T Consensus 136 -~e~l~~~i~--------~~tklV~ie~p-~NPtg~~~d----l~~I~~la~~~gi~lIvD~a~a~-~~~~~p-----~~ 195 (388)
T PRK07811 136 -LDAVRAAIT--------PRTKLIWVETP-TNPLLSITD----IAALAELAHDAGAKVVVDNTFAS-PYLQQP-----LA 195 (388)
T ss_pred -HHHHHHhcC--------cCCeEEEEECC-CCCcceecC----HHHHHHHHHHcCCEEEEECCCCc-cccCCc-----hh
Confidence 244565553 24678888865 555566655 99999999999999999999852 222222 22
Q ss_pred CCccee--eehhccCC-CccchheeEeC-HHHHhh
Q 005009 680 CVPDIA--CYGKLLTG-GVIPLAATLAT-NAVFDS 710 (719)
Q Consensus 680 v~PDIv--tlgK~Lgg-G~~Plsavl~~-~~i~~~ 710 (719)
...|++ .+.|.++| |-.-.|+++++ +++.+.
T Consensus 196 ~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~ 230 (388)
T PRK07811 196 LGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEA 230 (388)
T ss_pred hCCcEEEecCceeecCCCCcEEEEEEECCHHHHHH
Confidence 346877 46899986 21224556664 555543
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00066 Score=75.39 Aligned_cols=220 Identities=12% Similarity=0.059 Sum_probs=124.6
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhccc-ccCCCCCChHHHHHHHHHHhccCCCC--CCeEEEeCChHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH-VMFPENVYEPALECAELLLQGVGKGW--ASRAYFSDNGSTAIEI 476 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~-~~~~~~~~~~~~~Lae~L~~~~~~~~--~~rv~f~~SGsEA~E~ 476 (719)
.+||+..|.. .++ - .+.+.+++.+.+..... ........+....+++.|.+..+... -+.++.+++|++|...
T Consensus 30 ~~i~l~~g~p--~~~-~-~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~ 105 (384)
T PRK12414 30 DALNLSQGAP--NFA-P-DPALVEGVARAMRDGHNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYA 105 (384)
T ss_pred CeEEcCCCCC--CCC-C-CHHHHHHHHHHHHhCCCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHH
Confidence 5677776653 344 2 68889988876653211 11112234556678888777655321 1469999999999998
Q ss_pred HHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCccccc
Q 005009 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (719)
Q Consensus 477 AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (719)
+++... .. ..+|+...-+|.+.. ......|.
T Consensus 106 ~~~~l~-----~~----------------gd~Vlv~~p~y~~~~-~~~~~~g~--------------------------- 136 (384)
T PRK12414 106 AISALV-----HP----------------GDEVIYFEPSFDSYA-PIVRLQGA--------------------------- 136 (384)
T ss_pred HHHHhc-----CC----------------CCEEEEeCCCccchH-HHHHHcCC---------------------------
Confidence 887551 11 136777777775522 11111110
Q ss_pred CcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccc
Q 005009 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (719)
Q Consensus 557 ~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~ 636 (719)
..+++|... ++ + .-| .+.+++.+. .++.+|++-.- +.-.|.+
T Consensus 137 ---~~~~v~~~~------------~~----~--~~d--------~~~l~~~l~--------~~~~~v~i~~p-~NPTG~~ 178 (384)
T PRK12414 137 ---TPVAIKLSP------------ED----F--RVN--------WDEVAAAIT--------PRTRMIIVNTP-HNPSATV 178 (384)
T ss_pred ---EEEEEecCc------------cc----c--ccC--------HHHHHhhcC--------cccEEEEEcCC-CCCCCcC
Confidence 011111000 00 0 000 244555543 23445555432 4556765
Q ss_pred cCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc-cc-cccCCCccee---eehhccC-CCccchheeEeCHHHHhh
Q 005009 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TA-DLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDS 710 (719)
Q Consensus 637 ~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~-a~-e~~gv~PDIv---tlgK~Lg-gG~~Plsavl~~~~i~~~ 710 (719)
. +++-+++|.++|++||+++|+||+..-|--.|... .. .+.+....++ +|+|.+| .| +=+|.+++.+++.+.
T Consensus 179 ~-s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pG-lRiG~~v~~~~l~~~ 256 (384)
T PRK12414 179 F-SAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTG-WRVGYCLAPAELMDE 256 (384)
T ss_pred C-CHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCcc-ceEEEEecCHHHHHH
Confidence 5 57889999999999999999999997542123211 11 1112222233 6999997 67 688889999998876
Q ss_pred hc
Q 005009 711 FV 712 (719)
Q Consensus 711 ~~ 712 (719)
+.
T Consensus 257 l~ 258 (384)
T PRK12414 257 IR 258 (384)
T ss_pred HH
Confidence 53
|
|
| >COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00061 Score=72.26 Aligned_cols=87 Identities=18% Similarity=0.184 Sum_probs=66.7
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccC----CC---C
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDH----GL---V 292 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~----~~---~ 292 (719)
.+|++||+. -|+ .+...+.+++.+---+|+|+....-....+..+++.+++-+.+|+|+|.|.. .. .
T Consensus 166 ~~D~vIID~-----PP~-~g~~d~~i~~~~~~g~viVt~p~~~~~~~v~ka~~~~~~~~~~vlGvv~Nm~~~~~~~~~~g 239 (265)
T COG0489 166 EYDYVIIDT-----PPG-TGDADATVLQRIPDGVVIVTTPGKTALEDVKKAIDMLEKAGIPVLGVVENMSYFICPRCGEG 239 (265)
T ss_pred CCCEEEEeC-----CCC-chHHHHHHHhccCCeEEEEeCCccchHHHHHHHHHHHHhcCCceEEEEecCccCcccccCCC
Confidence 499999998 233 4566777777777678999999999999999999999999999999999954 11 2
Q ss_pred CHHHHHHhhcCCCcEEe-cCCCCC
Q 005009 293 NEVPLMSYLRNRVPVLV-LPPLPQ 315 (719)
Q Consensus 293 ~~~~l~~~~~~~~pvlg-lP~~~~ 315 (719)
..+...+.+ + |++| +|..+.
T Consensus 240 ~~~~~~~~~--~-~~~g~~p~~~~ 260 (265)
T COG0489 240 GGEKYAERY--G-PYLGSIPLDPS 260 (265)
T ss_pred chhhHHHHh--c-cccccCCCChh
Confidence 344444444 5 8888 877654
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00016 Score=79.99 Aligned_cols=168 Identities=15% Similarity=0.103 Sum_probs=99.8
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
+.++...+|+++|+++.+. +..+.++||++|+..++.+. .. ..+||.....|++.
T Consensus 49 ~~~pt~~~le~~la~l~g~---~~~~~~~sG~~ai~~~~~ll------~~----------------Gd~Vl~~~~~y~~t 103 (366)
T PRK08247 49 TGNPTRGVLEQAIADLEGG---DQGFACSSGMAAIQLVMSLF------RS----------------GDELIVSSDLYGGT 103 (366)
T ss_pred CCCchHHHHHHHHHHHhCC---CcEEEEcCHHHHHHHHHHHh------CC----------------CCEEEEecCCcCcH
Confidence 4567788999999999874 46788999999998766432 11 13788888888873
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
......... . .+ .....++ ..|
T Consensus 104 ~~~~~~~~~-----~---------~G-------------~~v~~vd--------------~~d----------------- 125 (366)
T PRK08247 104 YRLFEEHWK-----K---------WN-------------VRFVYVN--------------TAS----------------- 125 (366)
T ss_pred HHHHHHHhh-----c---------cC-------------ceEEEEC--------------CCC-----------------
Confidence 211100000 0 00 0000000 011
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEecccc-CccccCcccccccc
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLL 678 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqT-GfGRtG~~~a~e~~ 678 (719)
.+.+++.+. .++.+|++|.. ..-- .+..-+++|.++|++||+++|+||++. ++ .+.. .
T Consensus 126 -~~~l~~~i~--------~~tklv~le~P-~NP~----~~~~dl~~I~~la~~~g~~lIvD~t~~~~~--~~~p-----~ 184 (366)
T PRK08247 126 -LKAIEQAIT--------PNTKAIFIETP-TNPL----MQETDIAAIAKIAKKHGLLLIVDNTFYTPV--LQRP-----L 184 (366)
T ss_pred -HHHHHHhcc--------cCceEEEEECC-CCCC----CcHHHHHHHHHHHHHcCCEEEEECCCcccc--ccCc-----h
Confidence 244565554 24678888864 3322 245669999999999999999999983 22 1111 1
Q ss_pred CCCccee--eehhccCCC-ccchheeEeC-HHHHhhh
Q 005009 679 GCVPDIA--CYGKLLTGG-VIPLAATLAT-NAVFDSF 711 (719)
Q Consensus 679 gv~PDIv--tlgK~LggG-~~Plsavl~~-~~i~~~~ 711 (719)
....||+ .++|.++|. =+-.|+++++ +++.+.+
T Consensus 185 ~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~ 221 (366)
T PRK08247 185 EEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERL 221 (366)
T ss_pred hcCCcEEEeecceeccCCCceeeeEEecChHHHHHHH
Confidence 1235776 589999851 1234456665 5665543
|
|
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00015 Score=82.15 Aligned_cols=162 Identities=15% Similarity=0.068 Sum_probs=99.8
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
..++...+|+++|+++.+. +.+++++||+.|+.+++.... +.| ..||.....|.|
T Consensus 66 ~~~p~~~~Le~~lA~l~g~---~~av~~sSG~aAi~~al~all-----~~G----------------d~Vv~~~~~y~~- 120 (436)
T PRK07812 66 IMNPTQDVVEQRIAALEGG---VAALLLASGQAAETFAILNLA-----GAG----------------DHIVSSPRLYGG- 120 (436)
T ss_pred CCCchHHHHHHHHHHHhCC---CeEEEEccHHHHHHHHHHHHh-----CCC----------------CEEEEeCCcchH-
Confidence 3467778999999998873 578999999999999986441 111 367777665543
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
|...+... ... .+ ..... .++. .+
T Consensus 121 t~~~~~~~----l~~---------~G-------------i~v~~----------------vdd~----------~d---- 144 (436)
T PRK07812 121 TYNLFHYT----LPK---------LG-------------IEVSF----------------VEDP----------DD---- 144 (436)
T ss_pred HHHHHHHH----hhc---------Ce-------------EEEEE----------------ECCC----------CC----
Confidence 33221100 000 00 00000 0010 00
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccC
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~g 679 (719)
.+.+++.+. .+..+|++|.+ ....|.+.+ +++|.++|++||+++|+|+.|. .+... .-..
T Consensus 145 -~e~l~~ai~--------~~tklV~ie~~-sNp~G~v~D----l~~I~~la~~~gi~liVD~t~a-~~~~~-----~pl~ 204 (436)
T PRK07812 145 -LDAWRAAVR--------PNTKAFFAETI-SNPQIDVLD----IPGVAEVAHEAGVPLIVDNTIA-TPYLI-----RPLE 204 (436)
T ss_pred -HHHHHHhCC--------CCCeEEEEECC-CCCCCeecC----HHHHHHHHHHcCCEEEEECCCc-ccccC-----Cchh
Confidence 244555553 34678999987 788899888 9999999999999999999885 22111 1122
Q ss_pred CCccee--eehhccCC-CccchheeEe
Q 005009 680 CVPDIA--CYGKLLTG-GVIPLAATLA 703 (719)
Q Consensus 680 v~PDIv--tlgK~Lgg-G~~Plsavl~ 703 (719)
...|++ .+.|.+|| | --++++++
T Consensus 205 ~GaDivv~S~tK~lgg~G-~~i~G~vv 230 (436)
T PRK07812 205 HGADIVVHSATKYLGGHG-TAIAGVIV 230 (436)
T ss_pred cCCCEEEEecccccCCCC-CeEEEEEE
Confidence 347876 58999975 3 22444444
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=97.85 E-value=6.9e-05 Score=80.45 Aligned_cols=199 Identities=16% Similarity=0.116 Sum_probs=110.4
Q ss_pred CCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccc
Q 005009 416 TLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDF 495 (719)
Q Consensus 416 ~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~ 495 (719)
. ||++.+|+.+.. . +.-. -...+...+|.+++++++|. +.++|+.||+.||..|++...+ ++
T Consensus 7 ~-~~~m~~a~~~a~-~-gd~~--Yg~D~~~~~l~~~i~~l~g~---e~a~f~~sGT~An~~al~~~~~-----~~----- 68 (290)
T PF01212_consen 7 P-TPAMLEAMAAAN-V-GDDA--YGEDPTTARLEERIAELFGK---EAALFVPSGTMANQLALRAHLR-----PG----- 68 (290)
T ss_dssp S--HHEEHHHHHTT-S-B-CC--TTSSHHHHHHHHHHHHHHTS---SEEEEESSHHHHHHHHHHHHHH-----TT-----
T ss_pred C-CHHHHHHHHccc-c-CCcc--cCCChhHHHHHHHHHHHcCC---CEEEEeCCCChHHHHHHHHHHh-----cC-----
Confidence 5 899999994433 2 2211 12467788999999999984 6788999999999999998731 11
Q ss_pred cCCCccccCcceEEEEEeC-CcccCccccc-cccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhccc
Q 005009 496 LGKDTTEKCIELKVLALKG-SYHGDTLGAM-EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIV 573 (719)
Q Consensus 496 ~~~~~~~~~~r~kII~~~~-syHG~t~gal-slt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~ 573 (719)
..||.-+. -+|....++. .++| ...+++|..-.
T Consensus 69 -----------~~vi~~~~aHi~~~E~ga~~~~~G------------------------------~~~~~l~~~~~---- 103 (290)
T PF01212_consen 69 -----------ESVICADTAHIHFDETGAIEELSG------------------------------AKLIPLPSDDD---- 103 (290)
T ss_dssp -----------EEEEEETTEHHHHSSTTHHHHHTT------------------------------CEEEEEBECTG----
T ss_pred -----------CceeccccceeeeeccchhhHhcC------------------------------cEEEECCCccc----
Confidence 13333322 2233333333 2222 11222221100
Q ss_pred ccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhc
Q 005009 574 EHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR 653 (719)
Q Consensus 574 ~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~ 653 (719)
..+ + .+.|++.+.... .+..++++|.+|-- ....|-.+++.+.+++|+++|++|
T Consensus 104 -------G~l--------~--------~~~l~~~~~~~~--~h~~~~~~v~le~t-~~~~GG~~~s~~el~ai~~~a~~~ 157 (290)
T PF01212_consen 104 -------GKL--------T--------PEDLEAAIEEHG--AHHPQPAVVSLENT-TELAGGTVYSLEELRAISELAREH 157 (290)
T ss_dssp -------TBB-----------------HHHHHHHHHHHT--GTSGGEEEEEEESS-BTTTTSB---HHHHHHHHHHHHHH
T ss_pred -------CCC--------C--------HHHHHHHhhhcc--ccCCCccEEEEEec-CcCCCCeeCCHHHHHHHHHHHHhC
Confidence 000 0 356677776421 13468999999964 454444456889999999999999
Q ss_pred CCcEEEeccccC--ccccCccccccccCCCcceee--ehhccCCCccch-heeEeCHHHH
Q 005009 654 KIPVIFDEVFTG--FWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPL-AATLATNAVF 708 (719)
Q Consensus 654 gilLI~DEVqTG--fGRtG~~~a~e~~gv~PDIvt--lgK~LggG~~Pl-savl~~~~i~ 708 (719)
|+.|.+|=.--. ..-.|. ....+----|+++ +.|.++. |+ ++++++++++
T Consensus 158 gl~lhmDGARl~~a~~~~~~--~~~e~~~~~D~v~~~~tK~~g~---~~Gavl~~~~~~i 212 (290)
T PF01212_consen 158 GLPLHMDGARLANAAAALGV--SLAEIAAGADSVSFGGTKNGGA---PGGAVLAGNKEFI 212 (290)
T ss_dssp T-EEEEEETTHHHHHCHHHH--HHHHHHTTSSEEEEETTSTT-S---SSEEEEEESHHHH
T ss_pred ceEEEEehhhHHHhhhcccc--cHHHHhhhCCEEEEEEEccccc---ccceEEEechHHH
Confidence 999999954310 000011 0111112458774 5665543 33 4567777744
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00049 Score=77.35 Aligned_cols=214 Identities=10% Similarity=0.019 Sum_probs=120.8
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhccccc-CCCCC-----ChHHHHHHHHHHhccCCCCCCeEEEeCChHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM-FPENV-----YEPALECAELLLQGVGKGWASRAYFSDNGSTA 473 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~-~~~~~-----~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA 473 (719)
.|||..+ .|-- .+.|.+|+.+.+..+.... ..... .+...++-+.|+++++...-+.|+|++++++|
T Consensus 34 iyLd~a~------~~~~-p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~a 106 (424)
T PLN02855 34 VYLDNAA------TSQK-PAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTSREIVFTRNATEA 106 (424)
T ss_pred EEeeCcc------ccCC-CHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCHHHH
Confidence 6888533 4556 7889999988776542211 00011 12234666778887764212589999999999
Q ss_pred HHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcc
Q 005009 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (719)
Q Consensus 474 ~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~ 553 (719)
+..+++.. ....-+. ..+|+.....|++.......+... .+ .
T Consensus 107 l~~i~~~~-~~~~~~~----------------gd~vl~~~~~~~s~~~~~~~~a~~---~g-----------~------- 148 (424)
T PLN02855 107 INLVAYTW-GLANLKP----------------GDEVILSVAEHHSNIVPWQLVAQK---TG-----------A------- 148 (424)
T ss_pred HHHHHHHh-hhhcCCC----------------cCEEEECCCccHHHHHHHHHHHHH---cC-----------C-------
Confidence 98888743 1100111 236777766665432111111100 00 0
Q ss_pred cccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 005009 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (719)
Q Consensus 554 ~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~g 633 (719)
....++.... .. -+ .+.+++.+. .++..|++.-+ +...
T Consensus 149 ----~v~~v~~~~~-------------~~--------~~--------~~~l~~~i~--------~~t~lv~i~~~-~n~t 186 (424)
T PLN02855 149 ----VLKFVGLTPD-------------EV--------LD--------VEQLKELLS--------EKTKLVATHHV-SNVL 186 (424)
T ss_pred ----EEEEEecCCC-------------CC--------cC--------HHHHHHHhc--------cCceEEEEeCc-cccc
Confidence 0001111000 00 00 245666654 14456666665 7778
Q ss_pred ccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee--eehhccCCCccchheeEeCHHHHhhh
Q 005009 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 634 G~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlgK~LggG~~Plsavl~~~~i~~~~ 711 (719)
|.+.+ +++|.++|+++|+++|+|++|. +|..- +-.+ ...+|++ .+.| +.|. .-+|.+.+++++.+.+
T Consensus 187 G~~~~----~~~I~~l~~~~g~~vivD~a~~-~g~~~--~~~~--~~~~d~~~~s~~K-~~gp-~G~G~l~~~~~~~~~~ 255 (424)
T PLN02855 187 GSILP----VEDIVHWAHAVGAKVLVDACQS-VPHMP--VDVQ--TLGADFLVASSHK-MCGP-TGIGFLWGKSDLLESM 255 (424)
T ss_pred cccCC----HHHHHHHHHHcCCEEEEEhhhh-cCCcC--CCch--hcCCCEEEeeccc-ccCC-CccEEEEEchhhhhcC
Confidence 88887 7899999999999999999994 44321 1122 2347987 5689 4331 1268888999887665
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00013 Score=81.74 Aligned_cols=78 Identities=17% Similarity=0.119 Sum_probs=55.0
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceee--ehhccCC-Cc
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTG-GV 695 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvt--lgK~Lgg-G~ 695 (719)
+..+|++|-. ..-.|.+.+ +++|.++|+++|+++|+||++.- +-.... .....|+++ +.|.++| |
T Consensus 150 ~tklV~lesp-~NptG~v~d----l~~I~~la~~~gi~lvvD~a~a~-~~~~~~-----~~~gaDivv~S~sK~l~g~g- 217 (398)
T PRK07504 150 NTKVFFLESP-TNPTLEVID----IAAVAKIANQAGAKLVVDNVFAT-PLFQKP-----LELGAHIVVYSATKHIDGQG- 217 (398)
T ss_pred CceEEEEECC-CCCCcEecC----HHHHHHHHHHcCCEEEEECCccc-cccCCc-----hhhCCCEEEeeccccccCCc-
Confidence 4678888875 666777776 99999999999999999999962 111111 122368874 6899976 5
Q ss_pred cchh-eeEeCHHHH
Q 005009 696 IPLA-ATLATNAVF 708 (719)
Q Consensus 696 ~Pls-avl~~~~i~ 708 (719)
..+| +++++++..
T Consensus 218 ~~~GG~vv~~~~~i 231 (398)
T PRK07504 218 RCLGGVVLSDKAWI 231 (398)
T ss_pred cceEEEEEeCcHHH
Confidence 4565 566666654
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00024 Score=80.39 Aligned_cols=176 Identities=14% Similarity=0.059 Sum_probs=105.0
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
+.++....|.++|+++.+. +.++.++||++|+..++.... .. ...||+.+..|.|.
T Consensus 80 ~~~Pt~~~Le~~lA~leg~---~~~iv~~sG~~Ai~~~l~al~-----~~----------------Gd~Vv~~~p~Y~~~ 135 (427)
T PRK07049 80 FNHPNSEIVEDRLAVYEGA---ESAALFSSGMSAIATTLLAFV-----RP----------------GDVILHSQPLYGGT 135 (427)
T ss_pred CCCcCHHHHHHHHHHHhCC---CcEEEEccHHHHHHHHHHHHh-----CC----------------CCEEEEcCCCcccH
Confidence 4466678999999998863 578999999999888886552 11 13677777777773
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
......... .. |...+.+++. .|
T Consensus 136 ~~~~~~~l~--------------~~-------------Gi~~v~~~~~-------------~d----------------- 158 (427)
T PRK07049 136 ETLLAKTFR--------------NF-------------GVGAVGFADG-------------LS----------------- 158 (427)
T ss_pred HHHHHHHHH--------------hc-------------CcEEEEEeCC-------------CC-----------------
Confidence 221110000 00 0001111100 01
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHh------cCCcEEEeccccCccccCccc
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN------RKIPVIFDEVFTGFWRLGVET 673 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k------~gilLI~DEVqTGfGRtG~~~ 673 (719)
.+.+++.+.+. ....++.+|++|.. ..-.|.+.. ++++.++|++ +|+++|+||+..++-...
T Consensus 159 -~~~l~~~l~~~---~~~~~tklv~lesP-~NPtg~v~d----~~~l~~la~~~~~~~~~~~~vvvDety~~~~~~~--- 226 (427)
T PRK07049 159 -EAAIGAAAEAA---AAKGRVSLILIETP-ANPTNSLVD----VAAVRRVADAIEARQGHRPIIACDNTLLGPVFQK--- 226 (427)
T ss_pred -HHHHHHHHHhh---ccCCCceEEEEECC-CCCCCcccC----HHHHHHHHHHhhhcccCCCEEEEECCccccccCC---
Confidence 12344444321 11236778999975 777787765 5555555555 899999999965431111
Q ss_pred cccccCCCccee--eehhccCC--CccchheeEeCHHHHhhhc
Q 005009 674 TADLLGCVPDIA--CYGKLLTG--GVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 674 a~e~~gv~PDIv--tlgK~Lgg--G~~Plsavl~~~~i~~~~~ 712 (719)
-.....||+ +++|.++| | +=+|++++++++++.+.
T Consensus 227 ---pl~~g~divv~S~SK~~gG~~g-lr~G~vv~~~~l~~~l~ 265 (427)
T PRK07049 227 ---PLEHGADLSVYSLTKYVGGHSD-LVAGAVLGRKALIRQVR 265 (427)
T ss_pred ---ccccCCCEEEEcCceeecCCCC-cEEEEEECCHHHHHHHH
Confidence 111235877 79999994 6 56778888888877653
|
|
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00031 Score=75.98 Aligned_cols=58 Identities=19% Similarity=0.150 Sum_probs=44.7
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHH
Q 005009 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA 481 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA 481 (719)
||++.+|+.+.-....-. -...+...+++++++++++. ..++|+.||+.||..||...
T Consensus 13 ~~~m~eam~~a~~~~~~~---YG~D~~~~~~e~~~ae~~g~---~a~~Fv~sGT~aN~lal~~~ 70 (342)
T COG2008 13 TPEMREALAAANAVGDDV---YGEDPTTNALEQRIAELFGK---EAALFVPSGTQANQLALAAH 70 (342)
T ss_pred CHHHHHHHHhccccCCCC---CCCCHHHHHHHHHHHHHhCC---ceEEEecCccHHHHHHHHHh
Confidence 899999998765321111 12355677899999999884 78999999999999999876
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00097 Score=74.13 Aligned_cols=86 Identities=13% Similarity=0.145 Sum_probs=58.9
Q ss_pred EEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccccccc-CCCcc-ee--eehhccC-CCccc
Q 005009 623 LIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL-GCVPD-IA--CYGKLLT-GGVIP 697 (719)
Q Consensus 623 vIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~-gv~PD-Iv--tlgK~Lg-gG~~P 697 (719)
+|.-| +.-.|... +.+-+++|.++|+++|+++|+||++..+-..+.......+ +.... |+ +++|.+| .| +=
T Consensus 166 ~i~~p--~NPtG~~~-s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~pG-lR 241 (387)
T PRK07683 166 VLPYP--SNPTGVTL-SKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEMREKTIVINGLSKSHSMTG-WR 241 (387)
T ss_pred EEeCC--CCCCCcCC-CHHHHHHHHHHHHHcCeEEEEecccccceeCCCcCChhhccCCcCCeEEEeeccccccCcc-ce
Confidence 44445 45556644 7888999999999999999999999866222221111111 22122 32 6899998 78 78
Q ss_pred hheeEeCHHHHhhhc
Q 005009 698 LAATLATNAVFDSFV 712 (719)
Q Consensus 698 lsavl~~~~i~~~~~ 712 (719)
+|.+++++++++.+.
T Consensus 242 iG~i~~~~~l~~~~~ 256 (387)
T PRK07683 242 IGFLFAPSYLAKHIL 256 (387)
T ss_pred eEEEEcCHHHHHHHH
Confidence 899999999888764
|
|
| >COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00029 Score=73.74 Aligned_cols=102 Identities=23% Similarity=0.318 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHH
Q 005009 194 DSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYES 273 (719)
Q Consensus 194 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~ 273 (719)
.-+++..+++...+ ..|++||.++-|+..|.......+|+ +|+|.-..--+++....+++.
T Consensus 149 s~~lV~~~kk~a~E------------~~~~~IIDsaaG~gCpVi~sl~~aD~-------ai~VTEPTp~glhD~kr~~el 209 (284)
T COG1149 149 SGKLVTALKKHAKE------------LADLLIIDSAAGTGCPVIASLKGADL-------AILVTEPTPFGLHDLKRALEL 209 (284)
T ss_pred cchHHHHHHHhhhh------------hcceeEEecCCCCCChHHHhhccCCE-------EEEEecCCccchhHHHHHHHH
Confidence 44666777776654 16999999999999996544444443 578888888899999999999
Q ss_pred HHhCCCcEEEEEEccCCCCCHHHHHHhhcC-CCcEEe-cCCCCCC
Q 005009 274 LKLRGYDVVAVVFEDHGLVNEVPLMSYLRN-RVPVLV-LPPLPQD 316 (719)
Q Consensus 274 l~~~~~~v~gvi~N~~~~~~~~~l~~~~~~-~~pvlg-lP~~~~~ 316 (719)
.+.-|++ .++|+||....+. .++++.++ ++|+++ ||+..+.
T Consensus 210 ~~~f~ip-~~iViNr~~~g~s-~ie~~~~e~gi~il~~IPyd~~i 252 (284)
T COG1149 210 VEHFGIP-TGIVINRYNLGDS-EIEEYCEEEGIPILGEIPYDKDI 252 (284)
T ss_pred HHHhCCc-eEEEEecCCCCch-HHHHHHHHcCCCeeEECCcchhH
Confidence 9988888 7899999944444 77887766 899999 9998763
|
|
| >PRK11670 antiporter inner membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0016 Score=72.33 Aligned_cols=89 Identities=11% Similarity=0.042 Sum_probs=61.0
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCC-EEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCC--C----
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLP-GILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGL--V---- 292 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~p-vilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~--~---- 292 (719)
.+|++||-..-|+ +.....++....+- +|+|.....-++..+..+++.+...++++.|+|+|.... .
T Consensus 215 ~yDyvIID~PPg~------gd~~l~~~~l~aad~viiV~tp~~~s~~da~~~i~~~~~~~~~ilGiV~Nm~~~~~~~~~~ 288 (369)
T PRK11670 215 DLDYLVLDMPPGT------GDIQLTLAQNIPVTGAVVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVENMSMHICSNCGH 288 (369)
T ss_pred cCCEEEEeCCCCC------chHHHHHhhhccCCeEEEEecCchhHHHHHHHHHHHHhccCCCeEEEEEcCCccccCCccc
Confidence 4999999995432 22233444433333 677777777678888888888888899999999998621 1
Q ss_pred --------CHHHHHHhhcCCCcEEe-cCCCCCC
Q 005009 293 --------NEVPLMSYLRNRVPVLV-LPPLPQD 316 (719)
Q Consensus 293 --------~~~~l~~~~~~~~pvlg-lP~~~~~ 316 (719)
..+.+.+.+ ++|+++ ||.....
T Consensus 289 ~~~if~~~~~~~lae~~--~~~ll~~IP~~~~I 319 (369)
T PRK11670 289 HEPIFGTGGAEKLAEKY--HTQLLGQMPLHISL 319 (369)
T ss_pred hhhhcccchHHHHHHHc--CCcEEEEeCCChHH
Confidence 134444555 899999 9887653
|
|
| >COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00029 Score=72.40 Aligned_cols=114 Identities=21% Similarity=0.149 Sum_probs=69.9
Q ss_pred CCCCCHHHHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHH
Q 005009 189 GGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTI 268 (719)
Q Consensus 189 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~ 268 (719)
|-.+....+.+.+-+.+.. ..+|+|||.+--|+--=...-.-.+| =+|.|++...-++--+-
T Consensus 113 GC~Cp~~allR~~l~~l~~-----------~~~e~VivDtEAGiEHfgRg~~~~vD-------~vivVvDpS~~sl~tae 174 (255)
T COG3640 113 GCACPMNALLRRLLRHLIL-----------NRYEVVIVDTEAGIEHFGRGTIEGVD-------LVIVVVDPSYKSLRTAE 174 (255)
T ss_pred cccchHHHHHHHHHHHHhc-----------ccCcEEEEecccchhhhccccccCCC-------EEEEEeCCcHHHHHHHH
Confidence 3344455555555554432 24899999986655211111111122 25677776655555555
Q ss_pred HHHHHHHhCCCcEEEEEEccCCCCCHHHHHHhhcC-CCcEEe-cCCCCCCCcchh
Q 005009 269 SAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRN-RVPVLV-LPPLPQDSSNDL 321 (719)
Q Consensus 269 ~~~~~l~~~~~~v~gvi~N~~~~~~~~~l~~~~~~-~~pvlg-lP~~~~~~~~~~ 321 (719)
-.-+...+-|+.=+++|+|++... ...++..... +.+|+| ||+.+....-++
T Consensus 175 ri~~L~~elg~k~i~~V~NKv~e~-e~~~~~~~~~~~~~vlg~iP~d~~v~~~dl 228 (255)
T COG3640 175 RIKELAEELGIKRIFVVLNKVDEE-EELLRELAEELGLEVLGVIPYDPEVVEADL 228 (255)
T ss_pred HHHHHHHHhCCceEEEEEeeccch-hHHHHhhhhccCCeEEEEccCCHHHHhccc
Confidence 555555667888899999999655 4444444444 999999 999988765544
|
|
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0002 Score=81.03 Aligned_cols=161 Identities=13% Similarity=0.112 Sum_probs=100.1
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
..++....|+++|+++.+. +.+++++||+.|+..|+.... +.| .+||+.+..|+|.
T Consensus 61 ~~~p~~~~Le~~lA~leg~---~~al~~~sG~~Ai~~al~~ll-----~~G----------------D~Vlv~~~~y~~t 116 (431)
T PRK08248 61 IMNPTTDVFEKRIAALEGG---IGALAVSSGQAAITYSILNIA-----SAG----------------DEIVSSSSLYGGT 116 (431)
T ss_pred CCCchHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHHh-----CCC----------------CEEEEccCchhhH
Confidence 3466788999999998873 678999999999999987542 111 3677777766553
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
...+...- . .. |.....+| ..|
T Consensus 117 -~~~~~~~~-~------------~~-------------Gv~v~~vd--------------~~d----------------- 138 (431)
T PRK08248 117 -YNLFAHTL-P------------KL-------------GITVKFVD--------------PSD----------------- 138 (431)
T ss_pred -HHHHHHHH-H------------hC-------------CEEEEEEC--------------CCC-----------------
Confidence 22211000 0 00 00001111 011
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccC
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~g 679 (719)
.+.+++.+. +++.+|++|.. ..-.|.+.+ +++|.++|+++|+++|+|+++. ++.. ..-..
T Consensus 139 -~e~l~~ai~--------~~tklV~l~sp-~NPtG~v~d----i~~I~~la~~~gi~vIvD~t~a----~~~~--~~pl~ 198 (431)
T PRK08248 139 -PENFEAAIT--------DKTKALFAETI-GNPKGDVLD----IEAVAAIAHEHGIPLIVDNTFA----SPYL--LRPIE 198 (431)
T ss_pred -HHHHHHhcC--------CCCeEEEEECC-CCCCCcccC----HHHHHHHHHHcCCEEEEeCCCC----cccc--CChhH
Confidence 244555553 24678888865 566687776 7899999999999999999984 2211 11112
Q ss_pred CCcceee--ehhccCC-CccchheeEe
Q 005009 680 CVPDIAC--YGKLLTG-GVIPLAATLA 703 (719)
Q Consensus 680 v~PDIvt--lgK~Lgg-G~~Plsavl~ 703 (719)
...|+++ +.|.+|| | ..+|++++
T Consensus 199 ~gaDivv~S~tK~lgg~g-~~~Gg~v~ 224 (431)
T PRK08248 199 HGADIVVHSATKFIGGHG-TSIGGVIV 224 (431)
T ss_pred cCCCEEEEcCccccCCCC-CceEEEEE
Confidence 3478875 6799987 5 45666555
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00083 Score=74.72 Aligned_cols=90 Identities=14% Similarity=0.174 Sum_probs=60.5
Q ss_pred EEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc-ccc-ccccCCCcc---eeeehhccC-C
Q 005009 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETT-ADLLGCVPD---IACYGKLLT-G 693 (719)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~-~~a-~e~~gv~PD---IvtlgK~Lg-g 693 (719)
+.+|++-.. +.-.|.+. |.+-+++|.++|++||+++|.||+...|--.+. ... ....+..+- +-+++|.+| .
T Consensus 161 ~klv~~~~p-~NPtG~~~-~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~ 238 (389)
T PRK05957 161 TRAIVTISP-NNPTGVVY-PEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFA 238 (389)
T ss_pred ceEEEEeCC-CCCCCcCc-CHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhccCc
Confidence 334444332 56667655 577899999999999999999999976632221 111 111122222 347999997 6
Q ss_pred CccchheeEeCHHHHhhhc
Q 005009 694 GVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~ 712 (719)
| +-+|.+++++++++.+.
T Consensus 239 G-lRiG~~~~~~~~~~~~~ 256 (389)
T PRK05957 239 S-WRIGYMVIPIHLLEAIK 256 (389)
T ss_pred c-ceeEEEecCHHHHHHHH
Confidence 8 68999999999988774
|
|
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0004 Score=76.52 Aligned_cols=209 Identities=14% Similarity=0.055 Sum_probs=130.2
Q ss_pred cCCCCCCCHHHHHHHHHhhhhccccc--CCCC----CChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHH
Q 005009 411 QGPDATLQIELARDMGYTAARFGHVM--FPEN----VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRK 484 (719)
Q Consensus 411 ~~lGH~~hP~V~~Av~~q~~~~~~~~--~~~~----~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~ 484 (719)
...|.. .+.|.+++.+.+....... .... ..+...+..+.|+++++...-+.++|+.++++|++.++......
T Consensus 6 ~~~~~~-p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~l~~~ 84 (371)
T PF00266_consen 6 AGTGPM-PKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASSLLNP 84 (371)
T ss_dssp SSS-B--BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCccCC-CHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCccccccccccccchhhhhhhhccccc
Confidence 346777 8999999998877543211 0111 13345577777888877542257999999999999999887311
Q ss_pred hhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecC
Q 005009 485 FSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSL 564 (719)
Q Consensus 485 ~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 564 (719)
. ....+|+.....|++...-...+... .+. .+..++.
T Consensus 85 ~------------------~~g~~vl~~~~~~~s~~~~~~~~~~~--------------~g~-----------~v~~i~~ 121 (371)
T PF00266_consen 85 L------------------KPGDEVLVTSNEHPSNRYPWEEIAKR--------------KGA-----------EVRVIPA 121 (371)
T ss_dssp G------------------TTTCEEEEEESSHHHHHHHHHHHHHH--------------TTE-----------EEEEEEE
T ss_pred c------------------cccccccccccccccccccccccccc--------------chh-----------hhccccc
Confidence 1 22348999999988854221111100 000 0001111
Q ss_pred cchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHH
Q 005009 565 PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQR 644 (719)
Q Consensus 565 P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~ 644 (719)
+ . ... -+ .+.+++.|. .++..|++--+ ....|...| ++
T Consensus 122 ~--~-----------~~~--------~~--------~~~~~~~l~--------~~~~lv~~~~~-~~~tG~~~p----i~ 159 (371)
T PF00266_consen 122 D--P-----------GGS--------LD--------LEDLEEALN--------PDTRLVSISHV-ENSTGVRNP----IE 159 (371)
T ss_dssp G--T-----------TSS--------CS--------HHHHHHHHH--------TTESEEEEESB-ETTTTBBSS----HH
T ss_pred c--c-----------cch--------hh--------hhhhhhhhc--------cccceEEeecc-cccccEEee----ec
Confidence 1 0 000 01 355667774 35667777776 777899998 99
Q ss_pred HHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeee--hhccCCCccchheeEeCHHHHhhhc
Q 005009 645 ILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 645 ~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtl--gK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
+|.++|+++|+++|+|=+|. +|.. -.-.+. ..+|++++ -| |+|+ .-+|.+.++++..+.+.
T Consensus 160 ~I~~~~~~~~~~~~vD~~~~-~g~~--~id~~~--~~~D~~~~s~~K-l~gp-~G~g~l~v~~~~~~~~~ 222 (371)
T PF00266_consen 160 EIAKLAHEYGALLVVDAAQS-AGCV--PIDLDE--LGADFLVFSSHK-LGGP-PGLGFLYVRPEAIERLR 222 (371)
T ss_dssp HHHHHHHHTTSEEEEE-TTT-TTTS--S--TTT--TTESEEEEESTS-TTSS-STEEEEEEEHHHHHHHH
T ss_pred eehhhhhccCCceeEechhc-cccc--cccccc--cccceeeecccc-cCCC-Cchhhheehhhhhhccc
Confidence 99999999999999999996 5433 233333 35798864 59 8885 34799999999888874
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0015 Score=72.97 Aligned_cols=102 Identities=14% Similarity=0.178 Sum_probs=65.7
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEc-cccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc-ccccccC
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIE-PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLG 679 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvE-PViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~-~a~e~~g 679 (719)
+.+++.+.+ ...++.++++- | +.=.|.+. +.+=+++|.++|++|++++|.||+...|--.+.. .....+.
T Consensus 163 ~~l~~~~~~-----~~~~~~~i~~~~P--~NPTG~~~-s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~ 234 (403)
T PRK08636 163 ENLEKALRE-----SSPKPKYVVVNFP--HNPTTATV-EKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVE 234 (403)
T ss_pred hHHHHHHhh-----ccCCceEEEEeCC--CCCCCccC-CHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCC
Confidence 445666653 22344455554 6 34445544 6788899999999999999999999765222221 1111111
Q ss_pred CCccee----eehhccC-CCccchheeEeCHHHHhhhc
Q 005009 680 CVPDIA----CYGKLLT-GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 680 v~PDIv----tlgK~Lg-gG~~Plsavl~~~~i~~~~~ 712 (719)
-.+|.+ +|+|.+| .| +-+|.+++++++.+.+.
T Consensus 235 ~~~~~~i~~~S~SK~~~~~G-lRiG~iv~~~~li~~~~ 271 (403)
T PRK08636 235 GAKDVAVESYTLSKSYNMAG-WRVGFVVGNKKLVGALK 271 (403)
T ss_pred CccccEEEEEecccccCCcc-ceeeeeeCCHHHHHHHH
Confidence 123432 5899996 68 79999999999887664
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00033 Score=77.27 Aligned_cols=186 Identities=17% Similarity=0.145 Sum_probs=108.9
Q ss_pred HHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCC
Q 005009 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498 (719)
Q Consensus 419 P~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~ 498 (719)
.+..+++.+.++.-..+ ...+...+|++++++.++ ...++.++||+.|...|++.. +.
T Consensus 5 ~e~~~~v~~~l~s~~~~----~~g~~~~~fE~~~a~~~g---~~~~~~~~sgt~Al~~al~~l-----~~---------- 62 (363)
T PF01041_consen 5 EEEIDAVLEVLRSGWLS----TYGPYVEEFEKEFAEYFG---VKYAVAVSSGTSALHLALRAL-----GL---------- 62 (363)
T ss_dssp HHHHHHHHHHHHHTCCS----SSSHHHHHHHHHHHHHHT---SSEEEEESSHHHHHHHHHHHT-----TG----------
T ss_pred HHHHHHHHHHHHhCCcc----CCCHHHHHHHHHHHHHhC---CCeEEEeCChhHHHHHHHHhc-----CC----------
Confidence 35566677766654222 225788999999999998 478999999999999999986 11
Q ss_pred CccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccc
Q 005009 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDI 578 (719)
Q Consensus 499 ~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~ 578 (719)
....+||.-.-+|.+.....+.+...+ .|.|. . |+.+
T Consensus 63 -----~~gdeVi~p~~t~~~~~~ai~~~G~~p---------------v~~Di------------~-~~~~---------- 99 (363)
T PF01041_consen 63 -----GPGDEVIVPAYTFPATASAILWAGAEP---------------VFVDI------------D-PETL---------- 99 (363)
T ss_dssp -----GTTSEEEEESSS-THHHHHHHHTT-EE---------------EEE-B------------E-TTTS----------
T ss_pred -----CcCceEecCCCcchHHHHHHHHhccEE---------------EEEec------------c-CCcC----------
Confidence 112478877777776433322222110 01110 0 0110
Q ss_pred cccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEE
Q 005009 579 TFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVI 658 (719)
Q Consensus 579 ~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI 658 (719)
+ -| .+.+++.+.+ +..|||+=-+ .| .... +.+++++|++||+.||
T Consensus 100 --~---------id--------~~~~~~~i~~--------~t~ai~~~h~-~G---~~~d----~~~i~~~~~~~~i~lI 144 (363)
T PF01041_consen 100 --N---------ID--------PEALEKAITP--------KTKAILVVHL-FG---NPAD----MDAIRAIARKHGIPLI 144 (363)
T ss_dssp --S---------B---------HHHHHHHHHT--------TEEEEEEE-G-GG---B-------HHHHHHHHHHTT-EEE
T ss_pred --C---------cC--------HHHHHHHhcc--------CccEEEEecC-CC---Cccc----HHHHHHHHHHcCCcEE
Confidence 0 01 3567788863 4466666554 34 3333 9999999999999999
Q ss_pred EeccccCccccCccccccccCCCcceeeeh----hccCCCccchheeEeCH-HHHhh
Q 005009 659 FDEVFTGFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLATN-AVFDS 710 (719)
Q Consensus 659 ~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg----K~LggG~~Plsavl~~~-~i~~~ 710 (719)
-|=.|+ + |..+.-...|-.-|+.||| |.|+.|= -|++++++ ++++.
T Consensus 145 eD~a~a-~---g~~~~g~~~G~~gd~~~fSf~~~K~i~~ge--GG~v~~~~~~~~~~ 195 (363)
T PF01041_consen 145 EDAAQA-F---GARYKGRPVGSFGDIAIFSFHPTKIITTGE--GGAVVTNDPELAER 195 (363)
T ss_dssp EE-TTT-T---T-EETTEETTSSSSEEEEESSTTSSS-SSS---EEEEESTHHHHHH
T ss_pred Eccccc-c---CceeCCEeccCCCCceEecCCCCCCCcCCC--CeeEEecHHHHHHH
Confidence 999996 4 3333333344455888876 8886431 25577764 44443
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >TIGR02016 BchX chlorophyllide reductase iron protein subunit X | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00052 Score=73.91 Aligned_cols=92 Identities=14% Similarity=0.148 Sum_probs=56.0
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCC---hHHHHHHHHHHHHhCC--CcEEEEEEccCC-CCC
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLG---GISGTISAYESLKLRG--YDVVAVVFEDHG-LVN 293 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g---~i~~~~~~~~~l~~~~--~~v~gvi~N~~~-~~~ 293 (719)
.+|++||-..|++.++... ..++..+ ---||+|.....- +.+.+..+++.++..+ +++.|+|+|+.. ...
T Consensus 122 ~yD~IliD~~~~~~~~g~~-~~~a~~~---Ad~viVvt~~e~~sl~~a~~l~k~v~~~~~~~~~v~i~GVV~N~~~~~~~ 197 (296)
T TIGR02016 122 DFDFVLMDFLGDVVCGGFA-TPLARSL---AEEVIVIGSNDRQSLYVANNICNAVEYFRKLGGRVGLLGLVVNRDDGSGE 197 (296)
T ss_pred cCCEEEEecCCCccccccc-cchhhhh---CCeEEEEecchHHHHHHHHHHHHHHHHHHHcCCCCcceEEEEeCCCCccH
Confidence 4999999986654332111 1111111 1135666665533 3466677777777654 779999999983 333
Q ss_pred HHHHHHhhcCCCcEEe-cCCCCCCC
Q 005009 294 EVPLMSYLRNRVPVLV-LPPLPQDS 317 (719)
Q Consensus 294 ~~~l~~~~~~~~pvlg-lP~~~~~~ 317 (719)
.+.+.+.+ ++|+++ ||+.+...
T Consensus 198 ~~~~~~~~--~i~vLg~IP~d~~i~ 220 (296)
T TIGR02016 198 AQAFAREV--GIPVLAAIPADEELR 220 (296)
T ss_pred HHHHHHHc--CCCeEEECCCCHHHH
Confidence 33334444 999999 99987644
|
This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein. |
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00019 Score=80.11 Aligned_cols=80 Identities=13% Similarity=0.069 Sum_probs=52.7
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee--eehhccCC-Cccc
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG-GVIP 697 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlgK~Lgg-G~~P 697 (719)
..|++|-. .+..+ +..-+++|.++|++||+++|+|+.+..+ -..... .+| .|++ ++.|.++| | -+
T Consensus 149 klV~ie~p-t~~~~----~~~dl~~i~~la~~~gi~vivD~a~a~~-~~~~p~---~~g--~Divv~S~tK~l~g~~-~~ 216 (389)
T PRK05968 149 KLLYLESP-TSWVF----ELQDVAALAALAKRHGVVTMIDNSWASP-VFQRPI---TLG--VDLVIHSASKYLGGHS-DT 216 (389)
T ss_pred CEEEEECC-CCCCC----cHHHHHHHHHHHHHcCCEEEEECCCcch-hccCch---hcC--CcEEEeeccccccCCC-Ce
Confidence 46778865 45433 3456999999999999999999998532 112211 123 4777 57899986 3 23
Q ss_pred -hheeEeCHHHHhhhc
Q 005009 698 -LAATLATNAVFDSFV 712 (719)
Q Consensus 698 -lsavl~~~~i~~~~~ 712 (719)
.|++++++++++.+.
T Consensus 217 ~gG~i~~~~~~~~~l~ 232 (389)
T PRK05968 217 VAGVVAGSKEHIARIN 232 (389)
T ss_pred EEEEEEECHHHHHHHH
Confidence 355667888776543
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00029 Score=78.27 Aligned_cols=82 Identities=16% Similarity=0.120 Sum_probs=58.2
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee--eehhccCC--C
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG--G 694 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlgK~Lgg--G 694 (719)
++.+|++|.. ..-.|.+.+ +++|.++|++||+++|+||++..+ -... ......||+ +++|.++| +
T Consensus 130 ~tklV~l~sp-~NPtG~v~d----~~~I~~la~~~g~~vivDea~~~~-~~~~-----~l~~~~divv~S~sK~l~G~~~ 198 (376)
T PRK06460 130 RYDVVFVENI-TNPLLRVVD----ITELSKVCKENGSILIVDATFSTP-INQK-----PLELGADIVVHSASKFLAGHND 198 (376)
T ss_pred CceEEEEECC-CCCCCcccC----HHHHHHHHHHcCCEEEEECCcCcc-ccCC-----hhhcCCCEEEeecceeccCCCC
Confidence 5668888986 777888777 678999999999999999998532 1111 111235776 68999974 1
Q ss_pred ccchheeEeCHHHHhhhc
Q 005009 695 VIPLAATLATNAVFDSFV 712 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~ 712 (719)
.=+|.+++++++++.+.
T Consensus 199 -~~~G~~~~~~~l~~~l~ 215 (376)
T PRK06460 199 -VIAGLAAGYGKLLNVID 215 (376)
T ss_pred -ceEEEEecCHHHHHHHH
Confidence 12456788888877664
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00024 Score=79.14 Aligned_cols=170 Identities=16% Similarity=0.115 Sum_probs=103.1
Q ss_pred CCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCccc
Q 005009 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (719)
Q Consensus 439 ~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG 518 (719)
.+.++...+|+++|+++.+. +.+++++||++|+..++.... .. ...||+....|.+
T Consensus 47 R~~~p~~~~le~~lA~l~g~---~~v~~~~gg~~Ai~~~l~all-----~~----------------GD~Vl~~~p~y~~ 102 (382)
T TIGR02080 47 RSGNPTRDLLQQALAELEGG---AGAVVTNTGMSAIHLVTTALL-----GP----------------DDLLVAPHDCYGG 102 (382)
T ss_pred CCCCchHHHHHHHHHHHhCC---CcEEEEcCHHHHHHHHHHHHc-----CC----------------CCEEEEcCCCcHH
Confidence 34567788999999998763 579999999999998887652 11 2367877777765
Q ss_pred CccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHH
Q 005009 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (719)
Q Consensus 519 ~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~ 598 (719)
.......+... . + ..+. +.+. .|
T Consensus 103 ~~~~~~~~~~~----~----------~--------------~~v~----------------~~d~-------~d------ 125 (382)
T TIGR02080 103 TYRLLNALAKK----G----------C--------------FRVL----------------FVDQ-------GD------ 125 (382)
T ss_pred HHHHHHHHHhh----c----------C--------------eEEE----------------EECC-------CC------
Confidence 22111111100 0 0 0000 0000 00
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccccccc
Q 005009 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (719)
Q Consensus 599 ~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~ 678 (719)
.+.+++.+. .++.+|++|-. ..-.|.+.+ +++|.++|+++|+++|+||++.-+ -.-. -+
T Consensus 126 --~~~l~~ai~--------~~tklV~l~~p-~NPtG~~~d----l~~I~~la~~~g~~vvvD~a~~~~-~~~~-----pl 184 (382)
T TIGR02080 126 --EQALRAALA--------QKPKLVLIETP-SNPLLRVVD----IAKICHLAKAVGAVVVVDNTFLSP-ALQN-----PL 184 (382)
T ss_pred --HHHHHHhcC--------cCceEEEEECC-CCCCCEecC----HHHHHHHHHHcCCEEEEECCCccc-ccCC-----ch
Confidence 244555554 24578888865 566677766 789999999999999999999521 1111 11
Q ss_pred CCCccee--eehhccCC--CccchheeEe-CHHHHhhh
Q 005009 679 GCVPDIA--CYGKLLTG--GVIPLAATLA-TNAVFDSF 711 (719)
Q Consensus 679 gv~PDIv--tlgK~Lgg--G~~Plsavl~-~~~i~~~~ 711 (719)
....|++ ++.|-++| | +-.|++++ ++++.+.+
T Consensus 185 ~~gaDivv~S~sK~l~G~~~-~~~G~i~~~~~~~~~~l 221 (382)
T TIGR02080 185 ALGADLVLHSCTKYLNGHSD-VIAGAVIAKDPQVAEEL 221 (382)
T ss_pred hhCCCEEEeecceeccCCCC-ceeEEEEeCCHHHHHHH
Confidence 2235877 68998875 3 23455555 56665543
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0017 Score=71.14 Aligned_cols=86 Identities=17% Similarity=0.198 Sum_probs=56.2
Q ss_pred EEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc-cccccccCCCccee--eehhccC-CCccc
Q 005009 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPDIA--CYGKLLT-GGVIP 697 (719)
Q Consensus 622 AvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~-~~a~e~~gv~PDIv--tlgK~Lg-gG~~P 697 (719)
.+|..| +.-.|.. .+.+-+++|.++|++||+++|+||++.-+ ..+. ......++....|+ +++|.+| .| +=
T Consensus 140 i~i~~p--~NPtG~~-~~~~~~~~l~~~a~~~~~~ii~De~y~~~-~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G-lR 214 (350)
T TIGR03537 140 VWINYP--HNPTGAT-APRSYLKETIAMCREHGIILCSDECYTEI-YFGEPPHSALEVGIENVLAFHSLSKRSGMTG-YR 214 (350)
T ss_pred EEEeCC--CCCcCcc-cCHHHHHHHHHHHHHcCcEEEEecccccc-ccCCCCCchhhcCcCCEEEEeecccccCCcc-cc
Confidence 334445 5556754 47888999999999999999999998643 2222 11111122111233 5799986 46 57
Q ss_pred hheeEeCHHHHhhhc
Q 005009 698 LAATLATNAVFDSFV 712 (719)
Q Consensus 698 lsavl~~~~i~~~~~ 712 (719)
+|.+++++++.+.+.
T Consensus 215 iG~~~~~~~~~~~~~ 229 (350)
T TIGR03537 215 SGFVAGDEKLISFLR 229 (350)
T ss_pred ceeeecCHHHHHHHH
Confidence 777888888887664
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0002 Score=80.19 Aligned_cols=160 Identities=10% Similarity=0.067 Sum_probs=99.1
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
..++...+|+++|+++.+. +.++.++||..|+..++...+ +.| ..||+.+..|.+
T Consensus 44 ~g~p~~~~lE~~la~leg~---~~~v~~ssG~~Ai~~~l~all-----~~G----------------d~Vv~~~~~y~~- 98 (397)
T PRK05939 44 QGTPTTAALEAKITKMEGG---VGTVCFATGMAAIAAVFLTLL-----RAG----------------DHLVSSQFLFGN- 98 (397)
T ss_pred CCCHHHHHHHHHHHHHhCC---CeEEEeCCHHHHHHHHHHHHc-----CCC----------------CEEEECCCcccc-
Confidence 4578888999999998874 467788899999988887552 111 367776655544
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
+...+... ..+ + .....+| ..|
T Consensus 99 t~~~~~~l--~~~-G------------------------~~v~~v~--------------~~d----------------- 120 (397)
T PRK05939 99 TNSLFGTL--RGL-G------------------------VEVTMVD--------------ATD----------------- 120 (397)
T ss_pred HHHHHHHH--Hhc-C------------------------CEEEEEC--------------CCC-----------------
Confidence 32211110 000 0 0000000 011
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccC
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~g 679 (719)
.+.+++.+. .+..+|++|.+ ....|.+.+ +++|.++|++||+++|+|++|+. +.. ++-..
T Consensus 121 -~e~l~~~l~--------~~tklV~vesp-~NptG~v~d----l~~I~~la~~~gi~livD~t~a~----~~~--~~~~~ 180 (397)
T PRK05939 121 -VQNVAAAIR--------PNTRMVFVETI-ANPGTQVAD----LAGIGALCRERGLLYVVDNTMTS----PWL--FRPKD 180 (397)
T ss_pred -HHHHHHhCC--------CCCeEEEEECC-CCCCCCHHh----HHHHHHHHHHcCCEEEEECCccc----ccc--cCccc
Confidence 245666553 24678899986 777787765 99999999999999999999842 111 12222
Q ss_pred CCccee--eehhccCC-CccchheeEe
Q 005009 680 CVPDIA--CYGKLLTG-GVIPLAATLA 703 (719)
Q Consensus 680 v~PDIv--tlgK~Lgg-G~~Plsavl~ 703 (719)
...|++ .+.|.++| | --++++++
T Consensus 181 ~gaDivv~S~sK~~~g~g-~~igg~v~ 206 (397)
T PRK05939 181 VGASLVINSLSKYIAGHG-NALGGAVT 206 (397)
T ss_pred cCCEEEEecCeecccCCC-CeEEEEEe
Confidence 346777 57899986 5 34555555
|
|
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00038 Score=77.14 Aligned_cols=167 Identities=16% Similarity=0.171 Sum_probs=99.5
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
+.++...+|+++|+++.+ .+.++.++||.+|+..++.+. +.| ..||.....|+|.
T Consensus 51 ~~~p~~~~le~~lA~leg---~~~~v~~~sG~aAi~~~l~~l------~~G----------------D~VI~~~~~yg~~ 105 (364)
T PRK07269 51 TKNPTRAKLEETLAAIES---ADYALATSSGMSAIVLAFSVF------PVG----------------SKVVAVRDLYGGS 105 (364)
T ss_pred CCCccHHHHHHHHHHHhC---CCeEEEeCCHHHHHHHHHHHh------CCC----------------CEEEEecCCcCch
Confidence 456677899999999886 368999999999999998532 122 3677777666542
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
. .-+.... + .+.+.+ .+.. |
T Consensus 106 ~-~~~~~~~----------------------~-----~~~~~~----------------~~~~---------d------- 125 (364)
T PRK07269 106 F-RWFNQQE----------------------K-----EGRFHF----------------TYAN---------T------- 125 (364)
T ss_pred H-HHHHHHH----------------------h-----cCcEEE----------------EecC---------C-------
Confidence 1 1000000 0 000000 0110 0
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccC
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~g 679 (719)
.+.+++.+. .+..+|++|-. ..-.|.... +++|.++|+++|+++|+||++.. +. .+.-.+
T Consensus 126 -~~~l~~~i~--------~~TklV~lesP-~NPtg~~~d----i~~I~~la~~~gi~vvvD~t~~~----~~--~~~pl~ 185 (364)
T PRK07269 126 -EEELIAAIE--------EDTDIVYIETP-TNPLMVEFD----IEKVAKLAHAKGAKVIVDNTFYS----PI--YQRPIE 185 (364)
T ss_pred -HHHHHHhcC--------cCceEEEEECC-CCCCCeeeC----HHHHHHHHHHcCCEEEEECCCcc----cc--cCCchh
Confidence 244566654 24457888864 344565555 99999999999999999999631 11 123345
Q ss_pred CCcceee--ehhccCC-CccchheeEe-CHHHHhhh
Q 005009 680 CVPDIAC--YGKLLTG-GVIPLAATLA-TNAVFDSF 711 (719)
Q Consensus 680 v~PDIvt--lgK~Lgg-G~~Plsavl~-~~~i~~~~ 711 (719)
.-.||++ +.|-++| |=.=.|++++ ++++++.+
T Consensus 186 ~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~ 221 (364)
T PRK07269 186 LGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKL 221 (364)
T ss_pred hCCcEEEecCceeccCCCcccceEEEeCcHHHHHHH
Confidence 5689886 4688875 2111234555 45665544
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00036 Score=77.67 Aligned_cols=82 Identities=12% Similarity=0.071 Sum_probs=52.4
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee--eehhccCCC-c
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGG-V 695 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlgK~LggG-~ 695 (719)
++.+|++|-. ..-.|.... +++|.++|+++|+++|+||++.. +-.+.. .....|++ .+.|.++|- -
T Consensus 134 ~tklV~le~P-~NPtg~~~d----l~~I~~la~~~g~~lvvD~a~~~-~~~~~p-----~~~g~Divv~S~sK~l~G~~~ 202 (377)
T PRK07671 134 NTKAIYVETP-TNPLLKITD----IKKISTIAKEKGLLTIVDNTFMT-PYWQSP-----ISLGADIVLHSATKYLGGHSD 202 (377)
T ss_pred CCeEEEEECC-CCCCCcccC----HHHHHHHHHHcCCEEEEECCCCc-cccCCh-----hhhCCeEEEecCcccccCCcc
Confidence 4678888864 455566655 99999999999999999999852 112222 22345887 578999851 0
Q ss_pred cchheeEe-CHHHHhhh
Q 005009 696 IPLAATLA-TNAVFDSF 711 (719)
Q Consensus 696 ~Plsavl~-~~~i~~~~ 711 (719)
.=.|++++ ++++++.+
T Consensus 203 ~~~G~~v~~~~~l~~~~ 219 (377)
T PRK07671 203 VVAGLVVVNSPELAEDL 219 (377)
T ss_pred ceeEEEEeCcHHHHHHH
Confidence 01222444 55665543
|
|
| >cd03110 Fer4_NifH_child This protein family's function is unkown | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0017 Score=64.02 Aligned_cols=84 Identities=20% Similarity=0.259 Sum_probs=60.2
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCC--CCHHHH
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGL--VNEVPL 297 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~--~~~~~l 297 (719)
.+|++||.+.+|+.. .........+ -+|+|+.....++..+...++.++..+.++ ++|+|++.. .....+
T Consensus 92 ~~d~viiDtpp~~~~------~~~~~l~~aD-~vliv~~~~~~~~~~~~~~~~~l~~~~~~~-~vV~N~~~~~~~~~~~~ 163 (179)
T cd03110 92 GAELIIIDGPPGIGC------PVIASLTGAD-AALLVTEPTPSGLHDLERAVELVRHFGIPV-GVVINKYDLNDEIAEEI 163 (179)
T ss_pred CCCEEEEECcCCCcH------HHHHHHHcCC-EEEEEecCCcccHHHHHHHHHHHHHcCCCE-EEEEeCCCCCcchHHHH
Confidence 599999999887532 2233333322 367777877888999888999988888775 899999832 234456
Q ss_pred HHhhcC-CCcEEe-cC
Q 005009 298 MSYLRN-RVPVLV-LP 311 (719)
Q Consensus 298 ~~~~~~-~~pvlg-lP 311 (719)
++++++ ++|++| ||
T Consensus 164 ~~~~~~~~~~vl~~ip 179 (179)
T cd03110 164 EDYCEEEGIPILGKIP 179 (179)
T ss_pred HHHHHHcCCCeEEeCC
Confidence 666665 999999 87
|
It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion. |
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0019 Score=72.03 Aligned_cols=103 Identities=9% Similarity=0.082 Sum_probs=66.3
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc-cccccCC
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGC 680 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~-a~e~~gv 680 (719)
+.+++.+.. ...++.++++... +.-.|... +.+-+++|.++|++||+++|+||+...+--.|... ....+.-
T Consensus 152 ~~l~~~l~~-----~~~~~~~v~i~~p-~NPtG~~~-~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~ 224 (395)
T PRK08175 152 NELERAIRE-----SYPKPKMMILGFP-SNPTAQCV-ELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPG 224 (395)
T ss_pred HHHHHHHhh-----ccCCceEEEEeCC-CCCCCCCC-CHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCC
Confidence 456666652 1234566666532 45556554 78888999999999999999999997652122211 1100111
Q ss_pred Ccce----eeehhccC-CCccchheeEeCHHHHhhhc
Q 005009 681 VPDI----ACYGKLLT-GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 681 ~PDI----vtlgK~Lg-gG~~Plsavl~~~~i~~~~~ 712 (719)
.+|. -+++|.+| .| +=+|.+++++++++.+.
T Consensus 225 ~~~~~i~~~S~SK~~g~pG-lRiG~~~~~~~l~~~~~ 260 (395)
T PRK08175 225 AKDVAVEFFTLSKSYNMAG-WRIGFMVGNPELVSALA 260 (395)
T ss_pred cccCEEEEeeccccccCcc-hhheeeeCCHHHHHHHH
Confidence 1342 37899996 56 57788999999988764
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00091 Score=72.08 Aligned_cols=185 Identities=16% Similarity=0.081 Sum_probs=113.7
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlK 479 (719)
.+||+..+. +.+ . +|.+.+|+.+.++.... +. ....|.+.+++..+ +.++.+++++||...++.
T Consensus 9 ~~i~l~~~~--np~--~-p~~~~~a~~~~~~~~~~-----yp--~~~~l~~~ia~~~~----~~I~vt~G~~~al~~~~~ 72 (311)
T PRK08354 9 GLIDFSASV--NPY--P-PEWLDEMFERAKEISGR-----YT--YYEWLEEEFSKLFG----EPIVITAGITEALYLIGI 72 (311)
T ss_pred ceeEecCCC--CCC--C-CHHHHHHHHHHHHHhhc-----CC--ChHHHHHHHHHHHC----CCEEECCCHHHHHHHHHH
Confidence 688988743 333 5 68999999876654321 11 23567788888776 368999999999887664
Q ss_pred HHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcc
Q 005009 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (719)
Q Consensus 480 lA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (719)
+. . +| .+|+..+-+|.+....+ ...|.
T Consensus 73 ~~-----~-~g----------------d~vlv~~P~y~~~~~~~-~~~g~------------------------------ 99 (311)
T PRK08354 73 LA-----L-RD----------------RKVIIPRHTYGEYERVA-RFFAA------------------------------ 99 (311)
T ss_pred hh-----C-CC----------------CeEEEeCCCcHHHHHHH-HHcCC------------------------------
Confidence 33 1 12 35777766666532221 11110
Q ss_pred eeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCC
Q 005009 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (719)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (719)
..+..| .| .+.+++.+. . .-..++.-| +.-.|... +
T Consensus 100 ~~~~~~---------------~d------------------~~~l~~~~~-------~-~~~vi~~~P--~NPTG~~~-~ 135 (311)
T PRK08354 100 RIIKGP---------------ND------------------PEKLEELVE-------R-NSVVFFCNP--NNPDGKFY-N 135 (311)
T ss_pred EEeecC---------------CC------------------HHHHHHhhc-------C-CCEEEEecC--CCCCCCcc-C
Confidence 000111 00 133444443 1 224677788 45557644 7
Q ss_pred HHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee---eehhccC-CCccchheeEeC
Q 005009 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLAT 704 (719)
Q Consensus 640 ~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv---tlgK~Lg-gG~~Plsavl~~ 704 (719)
.+-+++|.++|++||+++|.||+...|..-+.. .. .+.++ +|+|.++ .| +-+|.+++-
T Consensus 136 ~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~-----~~-~~~vi~~~S~SK~~~l~G-lRiG~~v~~ 197 (311)
T PRK08354 136 FKELKPLLDAVEDRNALLILDEAFIDFVKKPES-----PE-GENIIKLRTFTKSYGLPG-IRVGYVKGF 197 (311)
T ss_pred HHHHHHHHHHhhhcCcEEEEeCcchhccccccc-----cC-CCcEEEEeccHhhcCCcc-ceeeeeeeh
Confidence 888999999999999999999999887332211 11 22222 6999998 78 688888873
|
|
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0013 Score=72.86 Aligned_cols=74 Identities=12% Similarity=0.144 Sum_probs=51.5
Q ss_pred EEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeeh--hccCCCccc
Q 005009 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIP 697 (719)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~LggG~~P 697 (719)
...|++.-. +...|.+.+ +++|.++|++||+++|+|++|. +|.. -+ +.....+|+++++ |-+| .|
T Consensus 141 t~lv~~~~~-~n~tG~~~~----~~~I~~la~~~g~~~ivD~a~~-~g~~--~~--~~~~~~~D~~~~s~~K~~g---p~ 207 (382)
T TIGR03403 141 TALVSVMWA-NNETGMIFP----IKEIGEICKERGVLFHTDAVQA-IGKI--PV--DVQKAGVDFLSFSAHKFHG---PK 207 (382)
T ss_pred CeEEEEEcc-cCCCccccC----HHHHHHHHHHcCCEEEEechhh-cCCC--cc--CccccCCCEEEEcchhhCC---CC
Confidence 456777765 778898887 7899999999999999999986 3321 11 1122357999888 9533 12
Q ss_pred -hheeEeCHH
Q 005009 698 -LAATLATNA 706 (719)
Q Consensus 698 -lsavl~~~~ 706 (719)
+|++.+++.
T Consensus 208 G~g~l~vr~~ 217 (382)
T TIGR03403 208 GVGGLYIRKG 217 (382)
T ss_pred ceEEEEECCC
Confidence 566666654
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00041 Score=76.47 Aligned_cols=209 Identities=13% Similarity=0.082 Sum_probs=119.5
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCC-------hHHHHHHHHHHhccCCCCCCeEEEeCChHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVY-------EPALECAELLLQGVGKGWASRAYFSDNGST 472 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~-------~~~~~Lae~L~~~~~~~~~~rv~f~~SGsE 472 (719)
-|+|..+. .. - +|++.+++...+... +.+. +..| ....+.-+.++++++.. -+.++|+++|+|
T Consensus 3 iYlD~~AT---Tp---~-~~~v~~~m~~~~~~~-fgNP-sS~H~~G~~A~~~ve~AR~~iA~llga~-~~eIiFTSG~TE 72 (386)
T COG1104 3 IYLDNAAT---TP---V-DPEVLEAMLPYLTEV-FGNP-SSLHSFGREARKAVEEAREQIAKLLGAD-PEEIIFTSGATE 72 (386)
T ss_pred cccccccc---CC---C-CHHHHHHHHHHHHhh-cCCc-cchhHhHHHHHHHHHHHHHHHHHHhCCC-CCeEEEecCCcH
Confidence 57786652 22 2 899999999988875 3221 1222 22334444555666654 368999999999
Q ss_pred HHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCc
Q 005009 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (719)
Q Consensus 473 A~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (719)
+|-.|||-++..+..+ ..++.||+-.--.|. ...++.--.. .++.
T Consensus 73 snNlaI~g~~~a~~~~---------------~~~~HIIts~iEH~a-Vl~~~~~Le~------------~g~~------- 117 (386)
T COG1104 73 SNNLAIKGAALAYRNA---------------QKGKHIITSAIEHPA-VLNTCRYLER------------QGFE------- 117 (386)
T ss_pred HHHHHHHhhHHhhhcc---------------cCCCeEEEcccccHH-HHHHHHHHHh------------cCCe-------
Confidence 9999999764333221 122355554333332 1111110000 0000
Q ss_pred ccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 005009 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (719)
Q Consensus 553 ~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~ 632 (719)
+.+ ++. |.++.. ..+.|+++|. ++...|-+==+ .++
T Consensus 118 Vty------l~V-----------------~~~G~v------------~~e~L~~al~--------~~T~LVSim~a-NnE 153 (386)
T COG1104 118 VTY------LPV-----------------DSNGLV------------DLEQLEEALR--------PDTILVSIMHA-NNE 153 (386)
T ss_pred EEE------eCC-----------------CCCCeE------------cHHHHHHhcC--------CCceEEEEEec-ccC
Confidence 000 000 000000 0366777775 23455555555 889
Q ss_pred CccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeeh-hccCCCccchheeEeCHHH
Q 005009 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG-KLLTGGVIPLAATLATNAV 707 (719)
Q Consensus 633 gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg-K~LggG~~Plsavl~~~~i 707 (719)
-|.+.| .+++-++|+++|++|.+|=||. +||.= .-.+.+ .-|+++|+ -.++|- =.+|++..++.+
T Consensus 154 ~G~IQp----I~ei~~i~k~~~i~fHvDAvQa-~Gkip--i~~~~~--~vD~ls~SaHK~~Gp-kGiGaLyv~~~~ 219 (386)
T COG1104 154 TGTIQP----IAEIGEICKERGILFHVDAVQA-VGKIP--IDLEEL--GVDLLSFSAHKFGGP-KGIGALYVRPGV 219 (386)
T ss_pred eeeccc----HHHHHHHHHHcCCeEEEehhhh-cCcee--cccccc--CcceEEeehhhccCC-CceEEEEECCCC
Confidence 999999 9999999999999999999995 75543 222222 37988874 445541 235666665543
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0014 Score=71.95 Aligned_cols=87 Identities=16% Similarity=0.283 Sum_probs=58.8
Q ss_pred EEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee--eehhccC-CCccch
Q 005009 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLT-GGVIPL 698 (719)
Q Consensus 622 AvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlgK~Lg-gG~~Pl 698 (719)
.+|.-| +.-.|. ..+.+.+++|.++|++||+++|+||+...|-..+..+.........+++ +++|.+| .| +-+
T Consensus 146 v~l~~p--~NPTG~-~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~Ri 221 (356)
T PRK08056 146 LFLCTP--NNPTGL-LPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQLADNPHLWVLRSLTKFYAIPG-LRL 221 (356)
T ss_pred EEEeCC--cCCCCC-CCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHHhccCCCEEEEEechhhccCcc-hhh
Confidence 334456 455676 4588999999999999999999999998773333211110011123343 6899999 78 799
Q ss_pred heeEe-CHHHHhhhc
Q 005009 699 AATLA-TNAVFDSFV 712 (719)
Q Consensus 699 savl~-~~~i~~~~~ 712 (719)
|.+++ ++++.+.+.
T Consensus 222 G~~v~~~~~~~~~l~ 236 (356)
T PRK08056 222 GYLVNSDDAAVARMR 236 (356)
T ss_pred eeeecCCHHHHHHHH
Confidence 99998 456666554
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0016 Score=72.23 Aligned_cols=87 Identities=16% Similarity=0.201 Sum_probs=59.8
Q ss_pred EEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccccccc-CCCccee---eehhccC-CCcc
Q 005009 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL-GCVPDIA---CYGKLLT-GGVI 696 (719)
Q Consensus 622 AvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~-gv~PDIv---tlgK~Lg-gG~~ 696 (719)
.++..| +.-.|.+. +.+-+++|.++|++||+++|.||+...|--.+.......+ +..+.++ +|+|.+| .| +
T Consensus 166 v~l~~p--~NPtG~~~-s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~G-l 241 (384)
T PRK06348 166 IILNSP--NNPTGAVF-SKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMPERTITFGSFSKDFAMTG-W 241 (384)
T ss_pred EEEeCC--CCCCCcCC-CHHHHHHHHHHHHHCCeEEEEecccccceeCCCccchhhcCCCcCcEEEEecchhccCCcc-c
Confidence 344455 45556655 7889999999999999999999999876322221111111 1222233 7899998 78 7
Q ss_pred chheeEeCHHHHhhhc
Q 005009 697 PLAATLATNAVFDSFV 712 (719)
Q Consensus 697 Plsavl~~~~i~~~~~ 712 (719)
=+|.+++++++.+.+.
T Consensus 242 RiG~~v~~~~~~~~~~ 257 (384)
T PRK06348 242 RIGYVIAPDYIIETAK 257 (384)
T ss_pred cceeeecCHHHHHHHH
Confidence 8899999998877653
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00073 Score=74.92 Aligned_cols=183 Identities=15% Similarity=0.167 Sum_probs=102.9
Q ss_pred HHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCC
Q 005009 420 ELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKD 499 (719)
Q Consensus 420 ~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~ 499 (719)
+-.+++.+.+...... ...+...++++.|++..+ .+++++++||++|...++..+. -..
T Consensus 12 ~~~~~~~~~l~~~~~~----g~~~~~~~~e~~la~~~g---~~~~v~~~sgt~al~~~l~~~~----~~~---------- 70 (375)
T PRK11706 12 TELDYIQQAMSSGKLC----GDGGFTRRCQQWLEQRFG---SAKVLLTPSCTAALEMAALLLD----IQP---------- 70 (375)
T ss_pred HHHHHHHHHHHcCCcc----CCCHHHHHHHHHHHHHhC---CCeEEEECCHHHHHHHHHHHhC----CCC----------
Confidence 3355666665543221 124556788888998876 4689999999999998887651 011
Q ss_pred ccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecC-cchhhhcccccccc
Q 005009 500 TTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSL-PEWLYSKIVEHKDI 578 (719)
Q Consensus 500 ~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-P~~~~~~~~~~~~~ 578 (719)
...||.-.-+|.+ +..++...|... ..++. ++.+
T Consensus 71 ------Gd~Viv~~~t~~~-~~~~~~~~G~~~----------------------------v~~d~d~~~~---------- 105 (375)
T PRK11706 71 ------GDEVIMPSYTFVS-TANAFVLRGAKI----------------------------VFVDIRPDTM---------- 105 (375)
T ss_pred ------CCEEEECCCCcHH-HHHHHHHcCCEE----------------------------EEEecCCCcC----------
Confidence 2357776666664 333333222110 00000 0000
Q ss_pred cccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEE
Q 005009 579 TFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVI 658 (719)
Q Consensus 579 ~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI 658 (719)
..| .+.+++.+.+ ++.+|++ + . ..|.... +++|.++|++||+++|
T Consensus 106 -~~d------------------~~~le~~i~~--------~tk~i~~--~-~-~~G~~~~----~~~i~~la~~~~i~vI 150 (375)
T PRK11706 106 -NID------------------ETLIEAAITP--------KTRAIVP--V-H-YAGVACE----MDTIMALAKKHNLFVV 150 (375)
T ss_pred -CcC------------------HHHHHHhcCC--------CCeEEEE--e-C-CCCCccC----HHHHHHHHHHcCCEEE
Confidence 001 2456666541 3445552 2 2 2355444 7899999999999999
Q ss_pred EeccccCccccCccccccccCCCcceeeeh----hccCCCccchheeEe-CHHHHh
Q 005009 659 FDEVFTGFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLA-TNAVFD 709 (719)
Q Consensus 659 ~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg----K~LggG~~Plsavl~-~~~i~~ 709 (719)
.|++|+ +|..-. -...|---|+.+++ |.++.|- -|++++ ++++++
T Consensus 151 eD~a~a-~g~~~~---~~~~g~~~~~~~~Sf~~~K~l~~g~--gG~~~~~~~~~~~ 200 (375)
T PRK11706 151 EDAAQG-VMSTYK---GRALGTIGHIGCFSFHETKNYTAGE--GGALLINDPALIE 200 (375)
T ss_pred EECccc-cccccC---CeeeecCcCEEEEeCCCCccccccC--CeEEEECCHHHHH
Confidence 999995 543211 11122234888888 9995431 133444 467665
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00078 Score=73.82 Aligned_cols=197 Identities=10% Similarity=0.090 Sum_probs=115.5
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccC
Q 005009 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~ 497 (719)
.|.+.+|+.+.+...... .+..+...+|.+.|++..+-. -+.++++++.++|+..+++... +.|
T Consensus 37 p~~~~~a~~~~~~~~~~~---~y~~~~~~~lr~~ia~~~~~~-~~~i~it~G~~~~l~~~~~~l~-----~~g------- 100 (351)
T PRK14807 37 PEEVIKNIQEIVKSSQVN---IYPDPTAEKLREELARYCSVV-PTNIFVGNGSDEIIHLIMLAFI-----NKG------- 100 (351)
T ss_pred CHHHHHHHHHHhhcCccc---CCCCccHHHHHHHHHHHhCCC-cccEEEecCHHHHHHHHHHHhc-----CCC-------
Confidence 589999988876532211 122233456778888776532 2578888888888887776541 122
Q ss_pred CCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhccccccc
Q 005009 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKD 577 (719)
Q Consensus 498 ~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~ 577 (719)
..|+..+-+|.+... .....|. ..+++|-
T Consensus 101 ---------d~Vlv~~p~y~~~~~-~~~~~g~------------------------------~~~~v~~----------- 129 (351)
T PRK14807 101 ---------DVVIYPHPSFAMYSV-YSKIAGA------------------------------VEIPVKL----------- 129 (351)
T ss_pred ---------CEEEEeCCChHHHHH-HHHHcCC------------------------------eEEEeec-----------
Confidence 367777777764221 1111110 0111110
Q ss_pred ccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcE
Q 005009 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (719)
Q Consensus 578 ~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilL 657 (719)
.+ + + .-| .+.+++.+.. .++.++++... +.-.|...+ .+++.++|++++.++
T Consensus 130 ---~~-~--~--~~d--------~~~l~~~~~~-------~~~k~v~l~~p-~NPtG~~~~----~~~l~~l~~~~~~~~ 181 (351)
T PRK14807 130 ---KE-D--Y--TYD--------VGSFIKVIEK-------YQPKLVFLCNP-NNPTGSVIE----REDIIKIIEKSRGIV 181 (351)
T ss_pred ---CC-C--C--CCC--------HHHHHHHhhc-------cCCCEEEEeCC-CCCCCCCCC----HHHHHHHHHhCCCEE
Confidence 00 0 0 000 2445555542 23445555443 666777776 677888899989999
Q ss_pred EEeccccCccccCccccccccCCCccee---eehhccC-CCccchheeEeCHHHHhhhcC
Q 005009 658 IFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 658 I~DEVqTGfGRtG~~~a~e~~gv~PDIv---tlgK~Lg-gG~~Plsavl~~~~i~~~~~~ 713 (719)
|+||++..|. |.... ....-.+.++ +|+|.+| .| +-+|.+++++++.+.+..
T Consensus 182 ivDe~y~~~~--~~~~~-~~~~~~~~vi~~~S~SK~~~~~G-lRiG~~v~~~~~~~~~~~ 237 (351)
T PRK14807 182 VVDEAYFEFY--GNTIV-DVINEFENLIVLRTLSKAFGLAG-LRVGYAVANENILKYLNL 237 (351)
T ss_pred EEeCcchhhc--ccchH-HHhhhCCCEEEEecchHhcccch-hceeeeecCHHHHHHHHH
Confidence 9999997762 33111 1111123333 6899998 78 799999999999987754
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0021 Score=71.62 Aligned_cols=89 Identities=11% Similarity=0.150 Sum_probs=59.9
Q ss_pred EEEEE-EccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc-cccccCCCcc--e--eeehhccC-
Q 005009 620 IGALI-IEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPD--I--ACYGKLLT- 692 (719)
Q Consensus 620 iAAvI-vEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~-a~e~~gv~PD--I--vtlgK~Lg- 692 (719)
+.+|+ ..| +.-.|.+. +.+-+++|.++|++||+++|.||++..|--.+... ....+.-.+| | -+|+|.+|
T Consensus 167 ~k~v~l~~P--~NPTG~~~-s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 243 (399)
T PRK07681 167 AKMMILNFP--GNPVPAMA-HEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSL 243 (399)
T ss_pred ceEEEEeCC--CCCcCcCC-CHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeecccccCC
Confidence 34444 447 45556555 68888999999999999999999998762222211 1111111122 2 37899997
Q ss_pred CCccchheeEeCHHHHhhhc
Q 005009 693 GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 693 gG~~Plsavl~~~~i~~~~~ 712 (719)
.| +=+|.+++++++.+.+.
T Consensus 244 ~G-lRiG~~i~~~~l~~~~~ 262 (399)
T PRK07681 244 AG-SRIGYMIGNEEIVRALT 262 (399)
T ss_pred cc-ceeEEEecCHHHHHHHH
Confidence 67 68888999999988764
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00034 Score=77.86 Aligned_cols=80 Identities=13% Similarity=0.049 Sum_probs=53.6
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee--eehhccCCCc-
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGV- 695 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlgK~LggG~- 695 (719)
++.+|++|.. ....|.+.+ +++|.++|++||+++|+|+++. .+-....+ ....|++ ...|.++|.-
T Consensus 131 ~tklv~le~p-snptg~v~d----l~~I~~la~~~g~~vivD~a~~-~~~~~~~l-----~~g~Di~v~S~tK~l~G~~~ 199 (378)
T TIGR01329 131 KTKLVLLESP-TNPLQKIVD----IRKISEMAHAQNALVVVDNTMM-SPLLCNPL-----ELGADIVYHSATKFLAGHSD 199 (378)
T ss_pred CceEEEEECC-CCCCCeeec----HHHHHHHHHHcCCEEEEECCCc-ccccCChh-----hcCCcEEEEecceeccCCcc
Confidence 5678999976 677787776 9999999999999999999983 22111111 2245887 4689997621
Q ss_pred cchheeEeC-HHHHh
Q 005009 696 IPLAATLAT-NAVFD 709 (719)
Q Consensus 696 ~Plsavl~~-~~i~~ 709 (719)
.=.|+++++ +++.+
T Consensus 200 ~~~G~v~~~~~~~~~ 214 (378)
T TIGR01329 200 VMAGVLAVKGEEIAK 214 (378)
T ss_pred ceeEEEEeCcHHHHH
Confidence 124455564 44433
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA) | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00057 Score=71.96 Aligned_cols=64 Identities=28% Similarity=0.141 Sum_probs=48.4
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCC---CHH-----------HHHHhhcC--CCcEEecCCCCC
Q 005009 252 PGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV---NEV-----------PLMSYLRN--RVPVLVLPPLPQ 315 (719)
Q Consensus 252 pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~~---~~~-----------~l~~~~~~--~~pvlglP~~~~ 315 (719)
-+++|+....-++..+..+++.|+..|+++.|+|+|++... ... .|.+.-+. +.|+..||+.+.
T Consensus 162 ~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v~gvV~N~v~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~i~~vp~~~~ 241 (254)
T cd00550 162 SFRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQLLPEDVTNCPFLEARREIQQKYLEEIEELFSDLPVAKLPLLPE 241 (254)
T ss_pred EEEEEeCCChhHHHHHHHHHHHHHHCCCCCCEEEEecCcccccCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEeecCCC
Confidence 37999999999999999999999999999999999998221 111 12221111 689888998875
|
This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity. |
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0028 Score=70.15 Aligned_cols=90 Identities=13% Similarity=0.098 Sum_probs=60.9
Q ss_pred cEEEEEEc-cccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc----cccccc-cCCCcceeeehhccC
Q 005009 619 CIGALIIE-PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV----ETTADL-LGCVPDIACYGKLLT 692 (719)
Q Consensus 619 ~iAAvIvE-PViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~----~~a~e~-~gv~PDIvtlgK~Lg 692 (719)
++.+|++. | +.-.|.+. +.+-+++|.++|++||+++|+||++..|--.|. +..... .+..-.+-+|||.+|
T Consensus 166 ~~~~v~l~~p--~NPtG~~~-~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g 242 (385)
T PRK09276 166 KAKLMFINYP--NNPTGAVA-DLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYN 242 (385)
T ss_pred cceEEEEeCC--CCCCCCCC-CHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcC
Confidence 34455555 6 45556654 788899999999999999999999986632232 111111 112223448999996
Q ss_pred -CCccchheeEeCHHHHhhhc
Q 005009 693 -GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 693 -gG~~Plsavl~~~~i~~~~~ 712 (719)
.| +=+|.+++++++++.+.
T Consensus 243 ~~G-lRiG~~i~~~~l~~~~~ 262 (385)
T PRK09276 243 MTG-WRIGFAVGNADLIAGLG 262 (385)
T ss_pred Ccc-hhheeeeCCHHHHHHHH
Confidence 56 57788999999888764
|
|
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00034 Score=78.07 Aligned_cols=169 Identities=14% Similarity=0.104 Sum_probs=102.5
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
+.++...+|.++|+++.+. +.+++++||++|+..++.... +. ...|+..+..|+|.
T Consensus 49 ~~~pt~~~L~~~lA~l~g~---~~~i~~~sg~~Ai~~~l~~l~-----~~----------------GD~Vl~~~~~y~~~ 104 (386)
T PRK08045 49 RGNPTRDVVQRALAELEGG---AGAVLTNTGMSAIHLVTTVFL-----KP----------------GDLLVAPHDCYGGS 104 (386)
T ss_pred CCCccHHHHHHHHHHHhCC---CeEEEECCHHHHHHHHHHHHc-----CC----------------CCEEEEcCCCcHHH
Confidence 4566778999999998773 469999999999998887541 11 23678777777753
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
......+... . + . .+. +.+. .|
T Consensus 105 ~~~~~~~~~~----~----------g-------------i-~v~----------------~vd~-------~d------- 126 (386)
T PRK08045 105 YRLFDSLAKR----G----------C-------------Y-RVL----------------FVDQ-------GD------- 126 (386)
T ss_pred HHHHHHHHhh----C----------C-------------e-EEE----------------EeCC-------CC-------
Confidence 2111111100 0 0 0 000 0000 00
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccC
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~g 679 (719)
.+.+++.+. .+..+|++|.. ..-.|.+.+ +++|.++|+++|+++|+||++... -. .....
T Consensus 127 -~e~l~~~l~--------~~tklV~l~sP-~NPtG~v~d----i~~I~~ia~~~g~~vivDeay~~~-~~-----~~pl~ 186 (386)
T PRK08045 127 -EQALRAALA--------EKPKLVLVESP-SNPLLRVVD----IAKICHLAREAGAVSVVDNTFLSP-AL-----QNPLA 186 (386)
T ss_pred -HHHHHHhcc--------cCCeEEEEECC-CCCCCEecC----HHHHHHHHHHcCCEEEEECCCCcc-cc-----CCchh
Confidence 134555553 24567888865 666677776 899999999999999999998532 11 11122
Q ss_pred CCccee--eehhccCC--CccchheeEe-CHHHHhhh
Q 005009 680 CVPDIA--CYGKLLTG--GVIPLAATLA-TNAVFDSF 711 (719)
Q Consensus 680 v~PDIv--tlgK~Lgg--G~~Plsavl~-~~~i~~~~ 711 (719)
...|++ .+.|-++| + .-.|++++ ++++.+.+
T Consensus 187 ~gaDivv~S~tK~l~G~~d-~~~G~vi~~~~~~~~~l 222 (386)
T PRK08045 187 LGADLVLHSCTKYLNGHSD-VVAGVVIAKDPDVVTEL 222 (386)
T ss_pred hCCCEEEeecceeccCCCC-ceeEEEEeCcHHHHHHH
Confidence 345877 58899975 3 33555656 46555433
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0024 Score=71.38 Aligned_cols=221 Identities=11% Similarity=0.006 Sum_probs=121.9
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhccc-ccCCCCCChHHHHHHHHHHhccCCC-CCCeEEEeCChHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH-VMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIA 477 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~-~~~~~~~~~~~~~Lae~L~~~~~~~-~~~rv~f~~SGsEA~E~A 477 (719)
.++|+..|.. .++ - +|.+.+++.+.+++... ........+....+++.+.+..+.. .-+.+.+++++++|...+
T Consensus 34 ~~i~l~~g~p--~~~-~-~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~ 109 (402)
T PRK06107 34 SIVDLTVGEP--DFD-T-PDHIKQAAVAAIERGETKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLA 109 (402)
T ss_pred CEEEcCCCCC--CCC-C-CHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHH
Confidence 5666665543 222 2 68899999987764221 1111222345567777776654431 125699999999999999
Q ss_pred HHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccC
Q 005009 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (719)
Q Consensus 478 lKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (719)
++... + .| ..|+.-+-+|.+.. ..+...+..
T Consensus 110 ~~~~~----~-~g----------------d~vl~~~p~y~~y~-~~~~~~~~~--------------------------- 140 (402)
T PRK06107 110 LMATL----E-AG----------------DEVIIPAPYWVSYP-DMVLANDGT--------------------------- 140 (402)
T ss_pred HHHhc----C-CC----------------CEEEEecCCCcCHH-HHHHHcCCE---------------------------
Confidence 86431 1 11 35666666555432 111111100
Q ss_pred cceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCcccc
Q 005009 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (719)
Q Consensus 558 ~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~ 637 (719)
...++.+.. + -+ ..+ .+.+++.+. +...+.++.-| +.-.|. .
T Consensus 141 -~~~v~~~~~--------------~---~~--~~~--------~~~l~~~~~-------~~~~~v~l~~p--~NPtG~-~ 182 (402)
T PRK06107 141 -PVIVACPEE--------------Q---GF--KLT--------PEALEAAIT-------PRTRWLILNAP--SNPTGA-V 182 (402)
T ss_pred -EEEecCCcc--------------c---CC--CCC--------HHHHHhhcC-------cCceEEEEECC--CCCCCc-C
Confidence 001111100 0 00 000 244555443 12233444445 344564 4
Q ss_pred CCHHHHHHHHHHHHhc-CCcEEEeccccCccccCcccc-cccc--CCCccee---eehhccC-CCccchheeEeCHHHHh
Q 005009 638 VDPLFQRILVKECQNR-KIPVIFDEVFTGFWRLGVETT-ADLL--GCVPDIA---CYGKLLT-GGVIPLAATLATNAVFD 709 (719)
Q Consensus 638 pp~~fl~~Lr~Lc~k~-gilLI~DEVqTGfGRtG~~~a-~e~~--gv~PDIv---tlgK~Lg-gG~~Plsavl~~~~i~~ 709 (719)
.+.+-++++.++|++| |+++|+||+...+.-.+..+. .... +....++ .++|.++ .| +=+|.+++++++.+
T Consensus 183 ~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG-lRiG~~~~~~~~~~ 261 (402)
T PRK06107 183 YSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTG-WRIGYAAGPADLIA 261 (402)
T ss_pred cCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCcc-cceeeeecCHHHHH
Confidence 4788899999999998 999999999976533332111 1111 1222355 4599997 78 68888999999888
Q ss_pred hhc
Q 005009 710 SFV 712 (719)
Q Consensus 710 ~~~ 712 (719)
.+.
T Consensus 262 ~~~ 264 (402)
T PRK06107 262 AIN 264 (402)
T ss_pred HHH
Confidence 764
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00048 Score=75.26 Aligned_cols=87 Identities=13% Similarity=0.222 Sum_probs=59.6
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHh--cCCcEEEeccccCccccCcc-ccccccCCCccee---eehhccC-C
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQN--RKIPVIFDEVFTGFWRLGVE-TTADLLGCVPDIA---CYGKLLT-G 693 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k--~gilLI~DEVqTGfGRtG~~-~a~e~~gv~PDIv---tlgK~Lg-g 693 (719)
.+|++... +.-.|.+.+ .+++.++|++ +|+++|+||++..|-..+.. .......-.++++ +++|.+| .
T Consensus 147 ~~v~l~~p-~NPtG~~~~----~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~ 221 (352)
T PRK03321 147 RLIFVCNP-NNPTGTVVT----PAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRTFSKAYGLA 221 (352)
T ss_pred CEEEEeCC-CCCcCCCcC----HHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEecchHHhhhH
Confidence 34444433 666788776 4566666665 69999999999877544432 1222223346666 6899998 6
Q ss_pred CccchheeEeCHHHHhhhcC
Q 005009 694 GVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~~ 713 (719)
| +-+|.+++++++++.+..
T Consensus 222 G-lRiG~~v~~~~~~~~~~~ 240 (352)
T PRK03321 222 G-LRVGYAVGHPEVIAALRK 240 (352)
T ss_pred H-HhhhhhcCCHHHHHHHHH
Confidence 8 789999999999988753
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00041 Score=79.16 Aligned_cols=73 Identities=18% Similarity=0.099 Sum_probs=51.4
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee--eehhccCC-Cc
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG-GV 695 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlgK~Lgg-G~ 695 (719)
+..+|++|-. ....|.+.+ +++|.++|++||+++|+||.+. .+-.+.. .+...|++ .+.|.|+| |
T Consensus 217 ~TklV~lesP-sNPtG~i~D----l~~I~~lAk~~g~~lIVD~A~a-~~~~~~p-----l~~gaDivv~S~tK~l~G~g- 284 (464)
T PLN02509 217 QTKLVWLESP-TNPRQQISD----IRKIAEMAHAQGALVLVDNSIM-SPVLSRP-----LELGADIVMHSATKFIAGHS- 284 (464)
T ss_pred CCeEEEEECC-CCCCCCHHH----HHHHHHHHHHcCCEEEEECCcc-ccccCCh-----hhcCCcEEEecCcccccCCC-
Confidence 4578889976 677776654 9999999999999999999984 3323332 23356887 57899986 3
Q ss_pred cchheeEe
Q 005009 696 IPLAATLA 703 (719)
Q Consensus 696 ~Plsavl~ 703 (719)
-.+++++.
T Consensus 285 dv~gG~v~ 292 (464)
T PLN02509 285 DVMAGVLA 292 (464)
T ss_pred ccceeEEE
Confidence 23444444
|
|
| >TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0065 Score=66.05 Aligned_cols=86 Identities=13% Similarity=0.111 Sum_probs=59.4
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccC--CCCCHHHH
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDH--GLVNEVPL 297 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~--~~~~~~~l 297 (719)
.+|+|||-..+++ +.....+....+. +|+|+....-++..+...++.++..+.+ ..+|+|+. .....+.+
T Consensus 204 ~~D~VIID~p~~~------~~~~~~~L~~AD~-vliV~~~~~~sl~~a~r~l~~l~~~~~~-~~lVv~~~~~~~~~~~~i 275 (322)
T TIGR03815 204 GGDLVVVDLPRRL------TPAAETALESADL-VLVVVPADVRAVAAAARVCPELGRRNPD-LRLVVRGPAPAGLDPEEI 275 (322)
T ss_pred cCCEEEEeCCCCC------CHHHHHHHHHCCE-EEEEcCCcHHHHHHHHHHHHHHhhhCCC-eEEEEeCCCCCCCCHHHH
Confidence 3999999997643 1223444444443 7788887777787777777777766554 36678876 23456778
Q ss_pred HHhhcCCCcEEe-cCCCCC
Q 005009 298 MSYLRNRVPVLV-LPPLPQ 315 (719)
Q Consensus 298 ~~~~~~~~pvlg-lP~~~~ 315 (719)
++.+ +.|+++ ||+.+.
T Consensus 276 ~~~l--g~~v~~~Ip~d~~ 292 (322)
T TIGR03815 276 AESL--GLPLLGEVRDQRG 292 (322)
T ss_pred HHHh--CCCceeeCCCChh
Confidence 8888 899999 888654
|
Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria. |
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0022 Score=71.81 Aligned_cols=89 Identities=12% Similarity=0.190 Sum_probs=60.3
Q ss_pred EEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccc-ccccCCCcce----eeehhccC-C
Q 005009 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADLLGCVPDI----ACYGKLLT-G 693 (719)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a-~e~~gv~PDI----vtlgK~Lg-g 693 (719)
...++.-| +.-.|... +.+-+++|.++|++||+++|.||+...|---+..+. ...+.-.+|. -+|+|.+| -
T Consensus 167 ~~v~l~~P--~NPtG~~~-s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~p 243 (405)
T PRK09148 167 IALIVNYP--SNPTAYVA-DLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMA 243 (405)
T ss_pred eEEEEeCC--CCCCCcCC-CHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEeccccccCCc
Confidence 34455556 44556554 788899999999999999999999976522222111 1111111332 37899998 6
Q ss_pred CccchheeEeCHHHHhhhc
Q 005009 694 GVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~ 712 (719)
| +=+|.+++++++.+.+.
T Consensus 244 G-lR~G~~v~~~~~i~~l~ 261 (405)
T PRK09148 244 G-WRMGFAVGNERLIAALT 261 (405)
T ss_pred c-hheeeeeCCHHHHHHHH
Confidence 7 68888999999988763
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00049 Score=76.87 Aligned_cols=168 Identities=11% Similarity=0.062 Sum_probs=101.8
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
+.++....|.++|+++.+ .+.+++++||++|+..++.... +.| ..|++....|.+.
T Consensus 50 ~~npt~~~Le~~lA~leg---~e~ivvt~gg~~Ai~~~l~all-----~~G----------------d~Il~~~~~y~~~ 105 (388)
T PRK08861 50 SGNPNRGLLEQTLSELES---GKGAVVTNCGTSALNLWVSALL-----GPD----------------DLIVAPHDCYGGT 105 (388)
T ss_pred CCCchHHHHHHHHHHHhC---CCeEEEECCHHHHHHHHHHHHc-----CCC----------------CEEEEcCCchHHH
Confidence 456778899999999987 3789999999999999987552 122 3677767666542
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
...+..... +. +.....++ ..|
T Consensus 106 -~~~~~~~~~---~~-----------------------gi~v~~vd--------------~~d----------------- 127 (388)
T PRK08861 106 -YRLFNTRAN---KG-----------------------DFKVQFVD--------------QSD----------------- 127 (388)
T ss_pred -HHHHHHHHh---cC-----------------------CeEEEEEC--------------CCC-----------------
Confidence 211110000 00 00000000 001
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEecccc-CccccCcccccccc
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLL 678 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqT-GfGRtG~~~a~e~~ 678 (719)
.+.+++.+. ++..+|++|-. ..-.|.+.+ +++|.++|+++|+++|+||++. |++. .-.
T Consensus 128 -~e~l~~~i~--------~~tklV~lesP-~NPtG~v~d----l~~I~~la~~~gi~vIvDea~~~~~~~-------~pl 186 (388)
T PRK08861 128 -AAALDAALA--------KKPKLILLETP-SNPLVRVVD----IAELCQKAKAVGALVAVDNTFLTPVLQ-------KPL 186 (388)
T ss_pred -HHHHHHhcC--------cCCeEEEEECC-CCCCCcccC----HHHHHHHHHHcCCEEEEECCccccccC-------CCc
Confidence 134555553 24578888865 666777776 7899999999999999999995 3211 112
Q ss_pred CCCcceee--ehhccCCC-ccchheeEeC-HHHHhh
Q 005009 679 GCVPDIAC--YGKLLTGG-VIPLAATLAT-NAVFDS 710 (719)
Q Consensus 679 gv~PDIvt--lgK~LggG-~~Plsavl~~-~~i~~~ 710 (719)
.+-.|+++ +.|-++|. =.-.|+++++ +++++.
T Consensus 187 ~~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~ 222 (388)
T PRK08861 187 ELGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEE 222 (388)
T ss_pred ccCCCEEEeecceeccCCCcceeEEEEecHHHHHHH
Confidence 23478874 68988862 1223445564 455443
|
|
| >PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.001 Score=80.24 Aligned_cols=63 Identities=19% Similarity=0.132 Sum_probs=47.7
Q ss_pred CcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccC
Q 005009 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDH 289 (719)
Q Consensus 221 ~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~ 289 (719)
||+|||.+.-.+.+ ....-++... --+|+|+..+.-...++..+++.+...|.++.|+|+|++
T Consensus 641 yD~IIIDtPP~~~~-----~Da~~la~~a-d~~llVvr~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~~ 703 (726)
T PRK09841 641 YDLVIVDTPPMLAV-----SDAAVVGRSV-GTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGV 703 (726)
T ss_pred CCEEEEeCCCcccc-----chHHHHHHhC-CeEEEEEeCCCCCHHHHHHHHHHHHhCCCceEEEEEeCc
Confidence 99999999532221 1223334443 356788888888889999999999999999999999997
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0036 Score=69.30 Aligned_cols=90 Identities=14% Similarity=0.125 Sum_probs=61.2
Q ss_pred cEEEEEEc-cccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc----cccccc-cCCCcceeeehhccC
Q 005009 619 CIGALIIE-PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV----ETTADL-LGCVPDIACYGKLLT 692 (719)
Q Consensus 619 ~iAAvIvE-PViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~----~~a~e~-~gv~PDIvtlgK~Lg 692 (719)
++.+|++- | +.-.|... +.+-+++|.++|++||+++|.||++..+-..+. +..... ....-.+-+|+|.+|
T Consensus 164 ~~~~v~i~~P--~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g 240 (383)
T TIGR03540 164 KAKLMFINYP--NNPTGAVA-PLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYN 240 (383)
T ss_pred cceEEEEeCC--CCCcCccC-CHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccC
Confidence 34455555 6 45566654 789999999999999999999999975532232 111111 111123348999997
Q ss_pred -CCccchheeEeCHHHHhhhc
Q 005009 693 -GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 693 -gG~~Plsavl~~~~i~~~~~ 712 (719)
.| +=+|.+++++++.+.+.
T Consensus 241 ~~G-lRiG~~i~~~~l~~~~~ 260 (383)
T TIGR03540 241 MTG-WRIGMAVGNADLIAGLG 260 (383)
T ss_pred Ccc-ceeeEEeCCHHHHHHHH
Confidence 57 67888999999887664
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0049 Score=69.75 Aligned_cols=216 Identities=14% Similarity=0.028 Sum_probs=116.1
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccc--cCCCCCChHHHHHHHHHHhccCCC-CCCeEEEeCChHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHV--MFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEI 476 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~--~~~~~~~~~~~~Lae~L~~~~~~~-~~~rv~f~~SGsEA~E~ 476 (719)
.+|++..|--...-.....|++.+++.+.+...... .......+....+++.+....+.+ .-+.|++++++++|...
T Consensus 53 ~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al~l 132 (430)
T PLN00145 53 PVLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKYNSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEI 132 (430)
T ss_pred CeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHcCcCCCCCCCccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHHHH
Confidence 677665543222222332467888888877642211 111122344445555554432211 02579999999999998
Q ss_pred HHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCccccc
Q 005009 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (719)
Q Consensus 477 AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (719)
+++... ..| ..|+...-+|......+ ...+..
T Consensus 133 ~~~~l~-----~~G----------------d~Vlv~~P~y~~y~~~~-~~~g~~-------------------------- 164 (430)
T PLN00145 133 IMSVLA-----QPG----------------ANILLPRPGYPLYEARA-VFSGLE-------------------------- 164 (430)
T ss_pred HHHHhc-----CCC----------------CEEEEcCCCCccHHHHH-HHcCCE--------------------------
Confidence 888651 122 35777777776632221 111100
Q ss_pred CcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccc
Q 005009 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (719)
Q Consensus 557 ~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~ 636 (719)
...++.+.. ++ | .-| .+.+++.+. ....+.+|.-|- .--|.
T Consensus 165 --~~~~~~~~~-------------~~----~--~~d--------~~~l~~~~~-------~~~~~i~i~~P~--NPtG~- 205 (430)
T PLN00145 165 --VRHFDLLPE-------------RG----W--EVD--------LEGVEALAD-------ENTVAMVIINPN--NPCGS- 205 (430)
T ss_pred --EEEeeCCcc-------------cC----C--cCC--------HHHHHHHhC-------cCceEEEEeCCC--CCCCC-
Confidence 001111000 00 0 001 245665553 235677778783 44565
Q ss_pred cCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc-cccccccCCCccee---eehhc-cCCCccchheeEe
Q 005009 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPDIA---CYGKL-LTGGVIPLAATLA 703 (719)
Q Consensus 637 ~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~-~~a~e~~gv~PDIv---tlgK~-LggG~~Plsavl~ 703 (719)
+.+.+-+++|.++|++||+++|.||+...|---+. +-....++-...++ .|+|. +..| +=+|.+++
T Consensus 206 v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG-~RlG~iv~ 276 (430)
T PLN00145 206 VYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGSISKRWVVPG-WRLGWIAT 276 (430)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccCcEEEEeccccccCCCC-eeEEEEEE
Confidence 45788899999999999999999999976532222 11111111122233 68999 4456 57777876
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00052 Score=76.69 Aligned_cols=81 Identities=16% Similarity=0.084 Sum_probs=52.3
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceee--ehhccCC--C
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTG--G 694 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvt--lgK~Lgg--G 694 (719)
+..+|++|-. ..-.|.+.+ +++|.++|+++|+++|+||.+..+ -.... .....|+++ +.|.++| |
T Consensus 138 ~tklV~l~~p-~NptG~~~d----l~~I~~la~~~g~~vvvD~a~~~~-~~~~~-----~~~g~Divv~S~tK~~~G~~~ 206 (390)
T PRK08064 138 NTKLFYVETP-SNPLLKVTD----IRGVVKLAKAIGCLTFVDNTFLTP-LLQKP-----LDLGADVVLHSATKFLAGHSD 206 (390)
T ss_pred CceEEEEECC-CCCCcEecc----HHHHHHHHHHcCCEEEEECCCCcc-cccCc-----hhhCCcEEEeecceeccCCcc
Confidence 4578888865 555677766 899999999999999999998532 11111 112358874 6799874 2
Q ss_pred ccchheeEe-CHHHHhhh
Q 005009 695 VIPLAATLA-TNAVFDSF 711 (719)
Q Consensus 695 ~~Plsavl~-~~~i~~~~ 711 (719)
.+ .|++++ ++++.+.+
T Consensus 207 ~l-aG~~v~~~~~~~~~l 223 (390)
T PRK08064 207 VL-AGLAVVKDEELAQKL 223 (390)
T ss_pred ce-eEEEEeCCHHHHHHH
Confidence 11 133444 45666654
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0028 Score=70.36 Aligned_cols=87 Identities=23% Similarity=0.334 Sum_probs=61.0
Q ss_pred EEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee---eehhccC-CCc
Q 005009 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGV 695 (719)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv---tlgK~Lg-gG~ 695 (719)
.+.++.-| +.-.|... +.+-+++|.++|++||+++|+||+..+|.-.+..... ....++++ +++|.+| .|
T Consensus 165 ~~v~l~~p--~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~--~~~~~~vi~~~S~SK~~~~~G- 238 (388)
T PRK07337 165 RGVLLASP--SNPTGTSI-APDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVSA--LSLGDDVITINSFSKYFNMTG- 238 (388)
T ss_pred eEEEEECC--CCCCCcCc-CHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcCh--hhccCCEEEEEechhhcCCch-
Confidence 34455556 34456544 6888999999999999999999999877544432111 12335655 6799996 57
Q ss_pred cchheeEeCHHHHhhhc
Q 005009 696 IPLAATLATNAVFDSFV 712 (719)
Q Consensus 696 ~Plsavl~~~~i~~~~~ 712 (719)
+=+|.+++.+++.+.+.
T Consensus 239 ~RiG~~~~~~~l~~~l~ 255 (388)
T PRK07337 239 WRLGWLVVPEALVGTFE 255 (388)
T ss_pred hheeeeecCHHHHHHHH
Confidence 57888999998887664
|
|
| >PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00029 Score=73.00 Aligned_cols=50 Identities=12% Similarity=0.132 Sum_probs=41.1
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCC-CChHHH
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPH-DSDSRF 92 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~-~~d~~~ 92 (719)
|+.+.|+|. +|+|||+++..|++.|. ++|++|+++|+..++... ..|+..
T Consensus 1 m~vi~ivG~-~gsGKTtl~~~l~~~L~-----~~G~~V~viK~~~~~~d~~~~Dt~r 51 (229)
T PRK14494 1 MRAIGVIGF-KDSGKTTLIEKILKNLK-----ERGYRVATAKHTHHEFDKPDTDTYR 51 (229)
T ss_pred CeEEEEECC-CCChHHHHHHHHHHHHH-----hCCCeEEEEEecccCCCCCCchHHH
Confidence 568999999 89999999999999994 789999999998775442 345443
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0018 Score=71.12 Aligned_cols=91 Identities=15% Similarity=0.100 Sum_probs=62.0
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccc-c--ccCC--Cccee--eehhcc
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA-D--LLGC--VPDIA--CYGKLL 691 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~-e--~~gv--~PDIv--tlgK~L 691 (719)
++.+|++... +.-.|... +.+-+++|.++|++||+++|.||++..|...+..... . ..+. ..-|+ +|+|.+
T Consensus 142 ~~~~v~~~~p-~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~ 219 (357)
T TIGR03539 142 GPDLIWLNSP-GNPTGRVL-SVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRS 219 (357)
T ss_pred CccEEEEeCC-CCCcCccC-CHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEecccccc
Confidence 4566776654 56667655 6788899999999999999999999766544432111 1 0011 12244 799997
Q ss_pred C-CCccchheeEeCHHHHhhhc
Q 005009 692 T-GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 692 g-gG~~Plsavl~~~~i~~~~~ 712 (719)
+ .| +=+|.+++++++.+.+.
T Consensus 220 ~~~G-~R~G~~i~~~~~~~~~~ 240 (357)
T TIGR03539 220 NLAG-YRAGFVAGDPALVAELL 240 (357)
T ss_pred CCCc-eeEEEEecCHHHHHHHH
Confidence 5 45 56778899998887663
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0073 Score=67.73 Aligned_cols=82 Identities=20% Similarity=0.212 Sum_probs=54.1
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc-cccccCCCccee---eehhc-cCC
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPDIA---CYGKL-LTG 693 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~-a~e~~gv~PDIv---tlgK~-Lgg 693 (719)
..+.++.-| +.-.|.+. +.+-+++|.++|++||+++|+||+...|--.|+.+ ....++-..-++ +|||. ...
T Consensus 170 ~~~v~l~~P--~NPtG~~~-s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~p 246 (409)
T PLN02656 170 TVALVIINP--GNPCGNVY-SYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRWIVP 246 (409)
T ss_pred ceEEEEECC--CCCCCCCC-CHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCcEEEEcccchhccCc
Confidence 456677777 34455554 67889999999999999999999998764333221 111111111233 69999 445
Q ss_pred CccchheeEeC
Q 005009 694 GVIPLAATLAT 704 (719)
Q Consensus 694 G~~Plsavl~~ 704 (719)
| +=+|.+++.
T Consensus 247 G-lRiG~~i~~ 256 (409)
T PLN02656 247 G-WRLGWFVTT 256 (409)
T ss_pred c-eeEEEEEEe
Confidence 7 688888883
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00047 Score=78.19 Aligned_cols=154 Identities=14% Similarity=0.089 Sum_probs=94.0
Q ss_pred CCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCccc
Q 005009 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (719)
Q Consensus 439 ~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG 518 (719)
...++...+|+++|+++.+. +..+.++||++|+.+|+.... +.| ..||+....|+|
T Consensus 65 r~~~pt~~~le~~la~l~g~---~~~v~fsSG~~Ai~~al~~ll-----~~G----------------d~VI~~~~~y~~ 120 (437)
T PRK05613 65 RLTNPTVEALENRIASLEGG---VHAVAFASGQAAETAAILNLA-----GAG----------------DHIVTSPRLYGG 120 (437)
T ss_pred CccChHHHHHHHHHHHHhCC---CeEEEeCCHHHHHHHHHHHhc-----CCC----------------CEEEECCCccHH
Confidence 34577788999999998873 578899999999998876541 122 267777666666
Q ss_pred CccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHH
Q 005009 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (719)
Q Consensus 519 ~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~ 598 (719)
.......... ..|. . + ..++.| +|
T Consensus 121 t~~~~~~~l~--------------~~Gi--~---v------~~vd~~---------------~d---------------- 144 (437)
T PRK05613 121 TETLFLVTLN--------------RLGI--E---V------TFVENP---------------DD---------------- 144 (437)
T ss_pred HHHHHHHHHH--------------hcCe--E---E------EEECCC---------------CC----------------
Confidence 3111001000 0000 0 0 000000 01
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccccccc
Q 005009 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (719)
Q Consensus 599 ~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~ 678 (719)
.+.+++.+. .++.+|++|.. ...-|.+.+ +++|.++|+++|+++|+|.+|. . |..+---.+
T Consensus 145 --~e~l~~~l~--------~~tk~V~~e~~-~Np~~~v~d----i~~I~~la~~~gi~livD~t~a-~---g~~~~p~~~ 205 (437)
T PRK05613 145 --PESWQAAVQ--------PNTKAFFGETF-ANPQADVLD----IPAVAEVAHRNQVPLIVDNTIA-T---AALVRPLEL 205 (437)
T ss_pred --HHHHHHhCC--------ccCeEEEEECC-CCCCCcccC----HHHHHHHHHHcCCeEEEECCCc-c---ccccChHHh
Confidence 245666654 23567888875 454466777 9999999999999999999994 2 222211233
Q ss_pred CCCcceee--ehhccCC
Q 005009 679 GCVPDIAC--YGKLLTG 693 (719)
Q Consensus 679 gv~PDIvt--lgK~Lgg 693 (719)
| .|+++ +-|-++|
T Consensus 206 G--aDivv~S~~K~l~G 220 (437)
T PRK05613 206 G--ADVVVASLTKFYTG 220 (437)
T ss_pred C--CCEEEeeccceecC
Confidence 4 49885 5688876
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0029 Score=70.53 Aligned_cols=85 Identities=15% Similarity=0.192 Sum_probs=53.2
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee---eehhcc-CCCcc
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLL-TGGVI 696 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv---tlgK~L-ggG~~ 696 (719)
+.++.-| +.-.|... +.+-+++|.++|++||+++|.||+...+--.|.......+.-...++ +|+|.. ..| +
T Consensus 169 ~v~l~~p--~NPtG~~~-~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~G-l 244 (398)
T PRK08363 169 AIAVINP--NNPTGALY-EKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSLTKDVPVIVMNGLSKVYFATG-W 244 (398)
T ss_pred EEEEECC--CCCCCcCc-CHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcccCHHHcCcCCcEEEEecchhccCCcc-c
Confidence 3444455 44456655 67889999999999999999999987652223221111111122233 789995 456 5
Q ss_pred chheeEe--CHHHHh
Q 005009 697 PLAATLA--TNAVFD 709 (719)
Q Consensus 697 Plsavl~--~~~i~~ 709 (719)
=+|.+++ .+++.+
T Consensus 245 RiG~~~~~~~~~~~~ 259 (398)
T PRK08363 245 RLGYIYFVDPEGKLA 259 (398)
T ss_pred eEEEEEEeCcHHHHH
Confidence 7777887 554443
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0022 Score=70.35 Aligned_cols=87 Identities=15% Similarity=0.220 Sum_probs=57.5
Q ss_pred EEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccc-ccccCCCcceeeehhccC-CCccchh
Q 005009 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADLLGCVPDIACYGKLLT-GGVIPLA 699 (719)
Q Consensus 622 AvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a-~e~~gv~PDIvtlgK~Lg-gG~~Pls 699 (719)
.++..| +.-.|... +.+-++++.++|++ ++++|.||++..|...+.... .+..+-..-+-+|+|.+| .| +-+|
T Consensus 158 i~l~~p--~NPTG~~~-s~~~~~~l~~~~~~-~~~iI~De~y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~G-lRiG 232 (357)
T PRK14809 158 VYLTSP--HNPTGSEI-PLDEVEALAERTDE-ETLVVVDEAYGEFAERPSAVALVEERDDVAVLRTFSKAYGLAG-LRLG 232 (357)
T ss_pred EEEeCC--CCCCCcCC-CHHHHHHHHHhCcc-CcEEEEechhhhccCCchhHHHHhhCCCEEEEecchhHhcCcc-hhhe
Confidence 444455 66677776 45556777777764 789999999987754333221 111111112337999998 68 7999
Q ss_pred eeEeCHHHHhhhcC
Q 005009 700 ATLATNAVFDSFVG 713 (719)
Q Consensus 700 avl~~~~i~~~~~~ 713 (719)
.+++++++++.+..
T Consensus 233 ~~~~~~~~~~~~~~ 246 (357)
T PRK14809 233 YAVVPEEWADAYAR 246 (357)
T ss_pred eeecCHHHHHHHHH
Confidence 99999999887753
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0012 Score=72.99 Aligned_cols=209 Identities=14% Similarity=0.079 Sum_probs=120.7
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlK 479 (719)
.++|+..+. ..+|. +|.+.+|+.+.+..... +..+...+|-+.+++..+-. -+.|++++++++|...++.
T Consensus 44 ~~i~l~~~~--~~~~~--~~~~~~a~~~~~~~~~~-----Y~~~~~~~Lr~aia~~~~v~-~e~I~it~Gs~~ai~~~~~ 113 (370)
T PRK09105 44 GAVFLNANE--CPLGP--SPAARDAAARSAALSGR-----YDLELEDDLRTLFAAQEGLP-ADHVMAYAGSSEPLNYAVL 113 (370)
T ss_pred CcEEecCCC--CCCCC--CHHHHHHHHHHHHHhcC-----CCCchHHHHHHHHHHHhCcC-hhhEEEcCChHHHHHHHHH
Confidence 566665542 23443 68999999887654322 22223556777787766533 3689999999999998887
Q ss_pred HHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcc
Q 005009 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (719)
Q Consensus 480 lA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (719)
... .. ..+|+..+-+|.+.... ....|.
T Consensus 114 ~l~-----~~----------------gd~Vli~~P~y~~~~~~-~~~~g~------------------------------ 141 (370)
T PRK09105 114 AFT-----SP----------------TAGLVTADPTYEAGWRA-ADAQGA------------------------------ 141 (370)
T ss_pred HHc-----CC----------------CCEEEEeCCChHHHHHH-HHHcCC------------------------------
Confidence 651 11 23677777666553221 111111
Q ss_pred eeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCC
Q 005009 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (719)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (719)
..+.+|.. .+ + ..| .+.+++.. ......++..| +.-.|.+. +
T Consensus 142 ~~~~v~~~-------------~~----~--~~d--------~~~l~~~~--------~~~~~v~l~nP--~NPTG~~~-~ 183 (370)
T PRK09105 142 PVAKVPLR-------------AD----G--AHD--------VKAMLAAD--------PNAGLIYICNP--NNPTGTVT-P 183 (370)
T ss_pred eEEEecCC-------------CC----C--CCC--------HHHHHhcC--------CCCCEEEEeCC--CCCCCcCc-C
Confidence 01111100 00 0 000 12333221 12234566777 45567765 5
Q ss_pred HHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee---eehhccC-CCccchheeEeCHHHHhhhc
Q 005009 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 640 ~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv---tlgK~Lg-gG~~Plsavl~~~~i~~~~~ 712 (719)
.+-++++.+.|+ +|+++|+||++..|+.. . ...+..+..++++ +|+|.+| .| +-+|.+++++++++.+.
T Consensus 184 ~~~l~~l~~~~~-~~~~lIvDEaY~~f~~~-~-s~~~~~~~~~~vi~~~SfSK~~g~~G-lRiG~~v~~~~~i~~l~ 256 (370)
T PRK09105 184 RADIEWLLANKP-AGSVLLVDEAYIHFSDA-P-SVVDLVAQRKDLIVLRTFSKLYGMAG-MRLGLAAARPDLLAKLA 256 (370)
T ss_pred HHHHHHHHHhCC-CCcEEEEECchHHhccC-c-chHHHHhhCCCEEEEecccHhhcCCc-cceeeeecCHHHHHHHH
Confidence 666777777664 59999999999767431 1 1112122345654 6899997 68 68899999999888764
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0082 Score=68.03 Aligned_cols=44 Identities=30% Similarity=0.348 Sum_probs=33.4
Q ss_pred CCCCCCCCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 29 QPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 29 ~~~~~~~~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
++.........++++|. +|+|||++++.|+..|. ++|++|...-
T Consensus 87 ~~~~~~~~p~vI~lvG~-~GsGKTTtaakLA~~L~-----~~g~kV~lV~ 130 (437)
T PRK00771 87 EPLVLPLKPQTIMLVGL-QGSGKTTTAAKLARYFK-----KKGLKVGLVA 130 (437)
T ss_pred cccccCCCCeEEEEECC-CCCcHHHHHHHHHHHHH-----HcCCeEEEec
Confidence 33333334457889997 99999999999999994 6788887754
|
|
| >PRK11519 tyrosine kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00083 Score=80.86 Aligned_cols=63 Identities=13% Similarity=0.137 Sum_probs=48.3
Q ss_pred CcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccC
Q 005009 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDH 289 (719)
Q Consensus 221 ~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~ 289 (719)
+|+|||.+. |...-....-+++..+.. |+|+....-....+..+++.++..+.++.|+|+|++
T Consensus 636 yD~ViiDtp-----P~~~v~Da~~l~~~~d~~-l~Vvr~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~v 698 (719)
T PRK11519 636 YDLVLIDTP-----PILAVTDAAIVGRHVGTT-LMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSI 698 (719)
T ss_pred CCEEEEeCC-----CcccchHHHHHHHHCCeE-EEEEeCCCCCHHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 999999994 332222344566666654 677777766788888899999999999999999998
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0031 Score=70.22 Aligned_cols=90 Identities=10% Similarity=0.058 Sum_probs=61.1
Q ss_pred cEEEEEEc-cccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc----cccccc-cCCCcceeeehhccC
Q 005009 619 CIGALIIE-PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV----ETTADL-LGCVPDIACYGKLLT 692 (719)
Q Consensus 619 ~iAAvIvE-PViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~----~~a~e~-~gv~PDIvtlgK~Lg 692 (719)
++.++++- | +.-.|.+ .+.+-+++|.++|++||+++|+||+..-|-..|. ...... .+..-.+-+|+|.+|
T Consensus 170 ~~k~i~l~~P--~NPtG~~-~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~ 246 (394)
T PRK05942 170 QAKILYFNYP--SNPTTAT-APREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYN 246 (394)
T ss_pred cceEEEEcCC--CCCCCCc-CCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhccC
Confidence 34455554 6 4555655 4788899999999999999999999875532222 111111 112223447999996
Q ss_pred -CCccchheeEeCHHHHhhhc
Q 005009 693 -GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 693 -gG~~Plsavl~~~~i~~~~~ 712 (719)
.| +=+|.+++++++.+.+.
T Consensus 247 ~~G-lRiG~i~~~~~l~~~l~ 266 (394)
T PRK05942 247 MAG-WRVGFVVGNRHIIQGLR 266 (394)
T ss_pred Chh-hheeeeecCHHHHHHHH
Confidence 57 67888999999988775
|
|
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00053 Score=76.77 Aligned_cols=170 Identities=11% Similarity=0.035 Sum_probs=101.3
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
..++....|+++|+.+-+. +..++++||.+|+..++...+ +.| ..||..+..|.|.
T Consensus 61 ~gnPt~~~Le~~la~le~~---~~~v~~sSG~aAi~~~l~all-----~~G----------------D~Vlv~~~~Y~~~ 116 (395)
T PRK05967 61 RGTPTTDALCKAIDALEGS---AGTILVPSGLAAVTVPFLGFL-----SPG----------------DHALIVDSVYYPT 116 (395)
T ss_pred CCChHHHHHHHHHHHHhCC---CCEEEECcHHHHHHHHHHHhc-----CCC----------------CEEEEccCCcHHH
Confidence 4577788899999886542 356778889999998885541 222 3688888888774
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
......+.. ..+. .+ .+-+. .+
T Consensus 117 ~~l~~~~l~--------------~~Gi-----~v-------------------------~~vd~-------~~------- 138 (395)
T PRK05967 117 RHFCDTMLK--------------RLGV-----EV-------------------------EYYDP-------EI------- 138 (395)
T ss_pred HHHHHHHHH--------------hcCe-----EE-------------------------EEeCC-------CC-------
Confidence 321101110 0000 00 00010 00
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccC
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~g 679 (719)
.+.+++.+. .+..+|++|.. .+.-+ ...-+++|.++|+++|+++|+|+++.. + ..+.-..
T Consensus 139 -~e~l~~al~--------~~TklV~lesP-sNP~l----~v~dl~~I~~la~~~g~~vvVD~t~a~----p--~~~~pl~ 198 (395)
T PRK05967 139 -GAGIAKLMR--------PNTKVVHTEAP-GSNTF----EMQDIPAIAEAAHRHGAIVMMDNTWAT----P--LYFRPLD 198 (395)
T ss_pred -HHHHHHhcC--------cCceEEEEECC-CCCCC----cHHHHHHHHHHHHHhCCEEEEECCccC----c--eecChhH
Confidence 134566654 24678999964 34333 344499999999999999999999953 2 1122222
Q ss_pred CCccee--eehhccCC-CccchheeEeCHHHHhhh
Q 005009 680 CVPDIA--CYGKLLTG-GVIPLAATLATNAVFDSF 711 (719)
Q Consensus 680 v~PDIv--tlgK~Lgg-G~~Plsavl~~~~i~~~~ 711 (719)
.-.||+ -+.|-++| |=+=+|+++.++++++.+
T Consensus 199 ~GaDivv~S~tKy~~Gh~d~~~G~v~~~~~~~~~l 233 (395)
T PRK05967 199 FGVDISIHAATKYPSGHSDILLGTVSANEKCWPQL 233 (395)
T ss_pred cCCCEEEEecccccCCCCCeeEEEEEcCHHHHHHH
Confidence 346777 47899987 213345566677655433
|
|
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00063 Score=76.19 Aligned_cols=82 Identities=16% Similarity=0.186 Sum_probs=55.1
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceee--ehhccCC-Cc
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTG-GV 695 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvt--lgK~Lgg-G~ 695 (719)
+...|++|.. ..-.|.+.+ +++|.++|++||+++|+||++.. +. .+.-+..-.|+++ .-|-|+| |=
T Consensus 146 ~TklV~lesp-sNPtg~v~d----l~~I~~la~~~g~~lvvD~t~a~----p~--~~~Pl~~GaDivv~S~tK~l~Gh~d 214 (394)
T PRK09028 146 NTKVLFLESP-GSITMEVQD----VPTLSRIAHEHDIVVMLDNTWAS----PI--NSRPFEMGVDISIQAATKYIVGHSD 214 (394)
T ss_pred CceEEEEECC-CCCCCcHHH----HHHHHHHHHHcCCEEEEECCccc----cc--cCCccccCceEEEEeCCeEecCCCC
Confidence 4679999986 565555544 89999999999999999999952 21 2222234578884 6899976 21
Q ss_pred cchheeEeCHHHHhhh
Q 005009 696 IPLAATLATNAVFDSF 711 (719)
Q Consensus 696 ~Plsavl~~~~i~~~~ 711 (719)
+=.|+++.++++++.+
T Consensus 215 ~~~G~~~~~~~~~~~l 230 (394)
T PRK09028 215 VMLGTATANEKHWDQL 230 (394)
T ss_pred EEEEEEECCHHHHHHH
Confidence 2334555566655433
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00059 Score=77.34 Aligned_cols=152 Identities=16% Similarity=0.111 Sum_probs=97.0
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
..++...+|+++|+++.+. +.+++++||++|+..|+...+ +.| ..||+....|++.
T Consensus 61 ~~~p~~~~le~~lA~l~g~---~~av~~sSGt~Al~~al~~ll-----~~G----------------d~Vi~~~~~y~~t 116 (433)
T PRK08134 61 ISNPTVAVLEERVAALEGG---VGAIATASGQAALHLAIATLM-----GAG----------------SHIVASSALYGGS 116 (433)
T ss_pred CcChHHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHHh-----CCC----------------CEEEEeCCccHHH
Confidence 4567788999999998874 458999999999999987552 112 3688887777763
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
...+... .. + .+ .. +.|-|.+ |
T Consensus 117 -~~~~~~~-l~--~----------~G-------------i~-----------------v~~vd~~-------d------- 138 (433)
T PRK08134 117 -HNLLHYT-LR--R----------FG-------------IE-----------------TTFVKPG-------D------- 138 (433)
T ss_pred -HHHHHHH-Hh--h----------CC-------------eE-----------------EEEECCC-------C-------
Confidence 2211100 00 0 00 00 0011110 0
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccC
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~g 679 (719)
.+.+++.|. .++.+|++|-+ ....|.+.+ +++|.++|++||+++|+|.+|. . |... .-..
T Consensus 139 -~~~l~~~i~--------~~TklV~~e~~-~np~g~v~D----i~~I~~la~~~gi~livD~t~a-~---~~~~--~pl~ 198 (433)
T PRK08134 139 -IDGWRAAIR--------PNTRLLFGETL-GNPGLEVLD----IPTVAAIAHEAGVPLLVDSTFT-T---PYLL--RPFE 198 (433)
T ss_pred -HHHHHHhcC--------CCCeEEEEECC-CcccCcccC----HHHHHHHHHHcCCEEEEECCCc-c---cccC--Cchh
Confidence 245666664 25678899986 677777777 9999999999999999999994 1 2211 1123
Q ss_pred CCcceee--ehhccCC
Q 005009 680 CVPDIAC--YGKLLTG 693 (719)
Q Consensus 680 v~PDIvt--lgK~Lgg 693 (719)
.-.|+++ ..|-++|
T Consensus 199 ~GaD~vv~S~tK~l~g 214 (433)
T PRK08134 199 HGADLVYHSATKFLGG 214 (433)
T ss_pred cCCCEEEeccccccCC
Confidence 4568875 4577765
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0015 Score=75.03 Aligned_cols=203 Identities=12% Similarity=0.021 Sum_probs=109.0
Q ss_pred CHHHHHHHHHhhhhcccccC-----CCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhcccccc
Q 005009 418 QIELARDMGYTAARFGHVMF-----PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVL 492 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~-----~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~ 492 (719)
.|.|.+++.+......+... .....+...++.+.++++.+-+ +..++.++|+.+...++.++ |.+...+|.
T Consensus 83 ~p~i~~~~~~~~~~~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~~--~~~l~~~~GA~a~~~~l~~~-r~~~~~~Gd- 158 (481)
T PRK04366 83 NPKINEKVARLPGFAELHPLQPEETVQGALELMYELQEWLKEITGMD--AVTLQPAAGAHGELTGLLMI-RAYHEARGD- 158 (481)
T ss_pred CHHHHHHHHhCcchhcCCCCCChhhhhHHHHHHHHHHHHHHHHhCCC--ceEEEeCcHHHHHHHHHHHH-HHHhhccCc-
Confidence 67888888765222222111 1112355667888888888732 23556678888887777766 444333221
Q ss_pred ccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcc
Q 005009 493 VDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKI 572 (719)
Q Consensus 493 ~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~ 572 (719)
..|.+||..+. .|.....++...|.. ...++....+
T Consensus 159 -----------~~~~~Vlv~~~-~hp~~~~~~~~~G~~----------------------------vv~v~~~~~~---- 194 (481)
T PRK04366 159 -----------TKRTEVIVPDS-AHGTNPASAAMAGFK----------------------------VVEIPSNEDG---- 194 (481)
T ss_pred -----------CCCCEEEEcCC-ccHhHHHHHHHcCCE----------------------------EEEeecCCCC----
Confidence 13456766665 556555443332210 0111111000
Q ss_pred cccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE-ccccccCCccccCCHHHHHHHHHHHH
Q 005009 573 VEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII-EPVVHAAGGMHMVDPLFQRILVKECQ 651 (719)
Q Consensus 573 ~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIv-EPViqg~gG~~~pp~~fl~~Lr~Lc~ 651 (719)
.-| .+.+++.+. .++++|++ -| . ..|.+ ..-+++|.++|+
T Consensus 195 -----------------~~D--------~e~L~~~i~--------~~t~~V~v~~P--n-~tG~~---~~dl~eI~~~a~ 235 (481)
T PRK04366 195 -----------------LVD--------LEALKAAVG--------EDTAALMLTNP--N-TLGLF---ERNILEIAEIVH 235 (481)
T ss_pred -----------------CcC--------HHHHHhhcc--------cCCeEEEEeCC--C-Ccccc---chHHHHHHHHHH
Confidence 001 245555553 23455554 34 2 34543 123899999999
Q ss_pred hcCCcEEEeccccCccccCccccccccCCCcceeee-h-hccCC----CccchheeEeCHHHHhhh
Q 005009 652 NRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY-G-KLLTG----GVIPLAATLATNAVFDSF 711 (719)
Q Consensus 652 k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtl-g-K~Lgg----G~~Plsavl~~~~i~~~~ 711 (719)
++|+++|+|+++. .+-+|.. ....+| .|+++. + |.|++ |--=+|.+.+++++.+.+
T Consensus 236 ~~gal~iVD~a~~-~~~~g~~-~~~~~G--aD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~l 297 (481)
T PRK04366 236 EAGGLLYYDGANL-NAILGKA-RPGDMG--FDVVHLNLHKTFSTPHGGGGPGSGPVGVKEELAPFL 297 (481)
T ss_pred HcCCEEEEEecCh-hhhcccC-CccccC--CCEEEEechhhcCCCCCCCCCCeeeeeehhhhHhhC
Confidence 9999999999994 2333432 222333 598854 3 88762 201245567788777665
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0029 Score=73.34 Aligned_cols=215 Identities=13% Similarity=0.082 Sum_probs=117.3
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCC-CCCeEEEeCChHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIAL 478 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~-~~~rv~f~~SGsEA~E~Al 478 (719)
.+|++..|.- ..+|....+++++++.+.+.............+....+++.+...-+.+ ..+.|+++++++||...++
T Consensus 147 ~~i~l~~G~p-~~~~~~~p~~~~~~~~~~~~~~~~Y~~~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~~eal~~~~ 225 (517)
T PRK13355 147 HILKLNIGNP-APFGFRTPDEVVYDMAQQLTDTEGYSDSKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGVSELINLSM 225 (517)
T ss_pred CeEEecCcCC-CcCCCCCCHHHHHHHHHHhhcCCCCCCCcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHHHHHH
Confidence 5666655432 2456643678999998877543221111122334455555554322111 1357999999999998888
Q ss_pred HHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCc
Q 005009 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (719)
Q Consensus 479 KlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 558 (719)
+... ..| ..|+...-+|......+. +.|..
T Consensus 226 ~~l~-----~~G----------------d~Vli~~P~y~~y~~~~~-~~g~~---------------------------- 255 (517)
T PRK13355 226 SALL-----DDG----------------DEVLIPSPDYPLWTACVN-LAGGT---------------------------- 255 (517)
T ss_pred HHhC-----CCC----------------CEEEEcCCCCcCHHHHHH-HCCCE----------------------------
Confidence 7551 112 367877777766443221 11110
Q ss_pred ceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccC
Q 005009 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (719)
Q Consensus 559 ~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~p 638 (719)
.+.+|- +.+.-| ..| .+.+++.+. +..-+.+|.-| +.-.|.+.
T Consensus 256 --~v~~~~---------------~~~~~~--~~d--------~~~l~~~~~-------~~~k~i~i~nP--~NPTG~v~- 298 (517)
T PRK13355 256 --AVHYRC---------------DEQSEW--YPD--------IDDIRSKIT-------SRTKAIVIINP--NNPTGALY- 298 (517)
T ss_pred --EEEeec---------------CcccCC--CCC--------HHHHHHhcC-------cCceEEEEECC--CCCCCcCc-
Confidence 011110 000000 001 244555553 22335667778 34556655
Q ss_pred CHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcce--e---eehhccC-CCccchheeEeC
Q 005009 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDI--A---CYGKLLT-GGVIPLAATLAT 704 (719)
Q Consensus 639 p~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDI--v---tlgK~Lg-gG~~Plsavl~~ 704 (719)
+.+.+++|.++|++||+++|.||+..-|---|..+. ....+.||. + +|+|..+ .| +=+|.++++
T Consensus 299 ~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~-s~~~~~~~~~vi~~~S~SK~~~~~G-~RiG~~i~~ 368 (517)
T PRK13355 299 PREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHT-SIASLAPDLFCVTFSGLSKSHMIAG-YRIGWMILS 368 (517)
T ss_pred CHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcc-cHHHhCCCCeEEEEecchhhccCcc-cceEEEEee
Confidence 689999999999999999999999976522232111 001123564 2 3799964 36 467777743
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0068 Score=67.49 Aligned_cols=87 Identities=13% Similarity=0.101 Sum_probs=57.4
Q ss_pred EEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc--ccc-c---cccCC-Ccc-ee---eehhc
Q 005009 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETT-A---DLLGC-VPD-IA---CYGKL 690 (719)
Q Consensus 622 AvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~--~~a-~---e~~gv-~PD-Iv---tlgK~ 690 (719)
.++.-| +.=.|.+. +.+-+++|.++|++|++++|.||+..-|--.+. ... . ...+. ..| ++ +|+|.
T Consensus 170 i~l~nP--~NPTG~~~-s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~ 246 (396)
T PRK09147 170 LFVCSP--GNPTGAVL-PLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKR 246 (396)
T ss_pred EEEcCC--CCCcCccC-CHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEeccccc
Confidence 344456 45556654 789999999999999999999999976521221 111 1 11111 112 22 79997
Q ss_pred cC-CCccchheeEeCHHHHhhhc
Q 005009 691 LT-GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 691 Lg-gG~~Plsavl~~~~i~~~~~ 712 (719)
.+ .| +-+|.+++++++++.+.
T Consensus 247 ~~~~G-lRiG~~~~~~~l~~~~~ 268 (396)
T PRK09147 247 SNVPG-LRSGFVAGDAALLKKFL 268 (396)
T ss_pred cCCcc-ceeeeecCCHHHHHHHH
Confidence 64 46 68888999999887664
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00075 Score=74.76 Aligned_cols=80 Identities=14% Similarity=0.071 Sum_probs=55.0
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEecccc-CccccCccccccccCCCccee--eehhccCC--
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLLGCVPDIA--CYGKLLTG-- 693 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqT-GfGRtG~~~a~e~~gv~PDIv--tlgK~Lgg-- 693 (719)
++..|++|.. ..-.|.+.+ +++|.++|+++|+++|+||++. .+| . .-....+|++ ++.|.|+|
T Consensus 132 ~t~lV~le~p-~NPtg~v~d----i~~I~~~a~~~g~~lvVD~t~~~~~~---~----~p~~~g~Divv~S~sK~l~G~~ 199 (366)
T PRK07582 132 GADLVLAETP-SNPGLDVCD----LAALAAAAHAAGALLVVDNTTATPLG---Q----RPLELGADLVVASDTKALTGHS 199 (366)
T ss_pred CceEEEEECC-CCCCCCccC----HHHHHHHHHHcCCEEEEECCCCCccc---c----CchhcCCcEEEecccccccCCC
Confidence 4556777865 566665555 8999999999999999999984 332 1 1112346887 57899976
Q ss_pred CccchheeEeC-HHHHhhh
Q 005009 694 GVIPLAATLAT-NAVFDSF 711 (719)
Q Consensus 694 G~~Plsavl~~-~~i~~~~ 711 (719)
| +-+|+++++ +++.+.+
T Consensus 200 g-~~~G~v~~~~~~l~~~l 217 (366)
T PRK07582 200 D-LLLGYVAGRDPELMAAV 217 (366)
T ss_pred C-eeEEEEEcCcHHHHHHH
Confidence 4 345667764 6666654
|
|
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0022 Score=73.11 Aligned_cols=68 Identities=13% Similarity=0.027 Sum_probs=46.2
Q ss_pred CCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc-ccccccCCCcceeee--hhccCCCccchheeEeCHHHH
Q 005009 632 AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVF 708 (719)
Q Consensus 632 ~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~-~a~e~~gv~PDIvtl--gK~LggG~~Plsavl~~~~i~ 708 (719)
.-|+..+ +++|.++|+++|++|++|++|+ +|..+.. +... .. ..|++++ .|.|+|-. -|.+++++++.
T Consensus 192 ~~g~~~d----i~~I~~i~~~~ga~l~vDaaq~-~G~i~~~~~~~~-~~-~~D~l~~S~hK~l~GP~--Gg~l~~~~~~~ 262 (452)
T PTZ00094 192 AYPRDID----YKRFREICDSVGAYLMADIAHT-SGLVAAGVLPSP-FP-YADVVTTTTHKSLRGPR--SGLIFYRKKVK 262 (452)
T ss_pred CCCCccC----HHHHHHHHHHcCCEEEEeccch-hccccCCCCCCC-CC-CCcEEEcCCccCCCCCC--ceEEEEecccc
Confidence 3556777 8999999999999999999995 6666542 1111 11 4798865 59886631 24566666543
|
|
| >COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00071 Score=68.84 Aligned_cols=194 Identities=16% Similarity=0.211 Sum_probs=111.9
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCCChHHHHHHhcCCCccccCCCccccccchh
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSI 116 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (719)
.+.+.||+--.||||||.|+.|..+|. ++|+||+..-- --|-. .-|- .-++ -|-+
T Consensus 2 ~~iIVvTSGKGGVGKTTttAnig~aLA-----~~GkKv~liD~-DiGLR-NLDl------imGl------------E~Ri 56 (272)
T COG2894 2 ARIIVVTSGKGGVGKTTTTANIGTALA-----QLGKKVVLIDF-DIGLR-NLDL------IMGL------------ENRI 56 (272)
T ss_pred ceEEEEecCCCCcCccchhHHHHHHHH-----HcCCeEEEEec-CcCch-hhhh------hhcc------------ccee
Confidence 467899999999999999999999994 88999987651 11110 0010 0010 0000
Q ss_pred hhhhHHHhhhhccCCCCCCCCccCCcccccc-ccccccc---ccCCCCCccccccccceeecccCcChHHHHhHhcCCCC
Q 005009 117 LFSSLFAAKSFLSSRDLPFQPQKFNSEMYDL-NFREENR---ISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVV 192 (719)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~ 192 (719)
.||+ ||=+++. |.-.-|+ .+.|++.++. +..+. ...+
T Consensus 57 ---------------------------VYd~vdVi~g~~~l~QALIkDK-----r~~nL~lLPA------sQtrd-Kdal 97 (272)
T COG2894 57 ---------------------------VYDLVDVIEGEATLNQALIKDK-----RLENLFLLPA------SQTRD-KDAL 97 (272)
T ss_pred ---------------------------eeeehhhhcCccchhhHhhccc-----cCCceEeccc------ccccC-cccC
Confidence 0110 1111111 0001111 3456665521 11122 4466
Q ss_pred CHHHHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHH
Q 005009 193 GDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYE 272 (719)
Q Consensus 193 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~ 272 (719)
..+.+.+.+.++... .+|++||..--|+-.+ +..|-..--.+|+|......++..+---+.
T Consensus 98 t~E~v~~vv~eL~~~------------~fDyIi~DsPAGIE~G-------~~~A~~~Ad~AiVVtnPEvSsVRDsDRiiG 158 (272)
T COG2894 98 TPEGVKKVVNELKAM------------DFDYIIIDSPAGIEQG-------FKNAVYFADEAIVVTNPEVSSVRDSDRIIG 158 (272)
T ss_pred CHHHHHHHHHHHHhc------------CCCEEEecCcchHHHH-------HHhhhhccceEEEEcCCCccccccchhhee
Confidence 778887777777642 4999999985544332 334444444677888877666665555455
Q ss_pred HHHhCC------C-cEEEEEEccC--------CCCCHHHHHHhhcCCCcEEe-cCCCCC
Q 005009 273 SLKLRG------Y-DVVAVVFEDH--------GLVNEVPLMSYLRNRVPVLV-LPPLPQ 315 (719)
Q Consensus 273 ~l~~~~------~-~v~gvi~N~~--------~~~~~~~l~~~~~~~~pvlg-lP~~~~ 315 (719)
.|...+ - .-.-+|+|+. ..-..+.+.+.+ .+|++| ||...+
T Consensus 159 lLesk~~rae~~~~~~~~llvnR~~p~~v~~GeMlsv~Dv~~iL--~i~liGiiPed~~ 215 (272)
T COG2894 159 LLESKSRRAEIGEEPKEHLLLNRYRPEMVKRGEMLSVEDVLEIL--SIPLIGVIPEDQD 215 (272)
T ss_pred ehhcccchhhcCCcccceEEEEccCHHHhccCCcccHHHHHHHh--CCceEEeecCchh
Confidence 554333 1 1257899997 123466777888 899999 888664
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0055 Score=67.98 Aligned_cols=87 Identities=13% Similarity=0.137 Sum_probs=59.3
Q ss_pred EEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc--ccccccCCCcc-ee---eehhccC-CC
Q 005009 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE--TTADLLGCVPD-IA---CYGKLLT-GG 694 (719)
Q Consensus 622 AvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~--~a~e~~gv~PD-Iv---tlgK~Lg-gG 694 (719)
.+|.-| +.=.|... +.+-+++|.++|++||+++|.||+..-|--.+.- -....+.-.-+ ++ +|||.+| .|
T Consensus 169 i~l~~p--~NPTG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~G 245 (388)
T PRK07366 169 MVLSYP--HNPTTAIA-PLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMGG 245 (388)
T ss_pred EEEeCC--CCCCCccC-CHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCCcc
Confidence 344444 55567655 6888999999999999999999999866322321 11111111112 22 8999997 68
Q ss_pred ccchheeEeCHHHHhhhc
Q 005009 695 VIPLAATLATNAVFDSFV 712 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~ 712 (719)
+=+|.+++++++.+.+.
T Consensus 246 -lRiG~~v~~~~li~~l~ 262 (388)
T PRK07366 246 -FRIGFAIGNAQLIQALR 262 (388)
T ss_pred -hhheehcCCHHHHHHHH
Confidence 68889999999988764
|
|
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0009 Score=75.49 Aligned_cols=102 Identities=16% Similarity=0.130 Sum_probs=64.2
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccc----cc
Q 005009 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT----AD 676 (719)
Q Consensus 601 ~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a----~e 676 (719)
.+.|++.|.+ .+..+++.|.+|=.+...|| .+.|...+++++++|++||+.||.|=.+. ||- + +|- -.
T Consensus 156 ~~~Le~aI~~----~~~~~~~lV~~e~t~N~~GG-~pvs~~~l~~I~elA~~~Gl~vi~DaAR~-~gN-A-~~I~~re~g 227 (450)
T TIGR02618 156 LKKLQKLIDE----VGADKIPYICLAVTVNLAGG-QPVSMANMREVRELCEAHGIKVFYDATRC-VEN-A-YFIKEREQG 227 (450)
T ss_pred HHHHHHHhcc----ccCcccCceEEEEecccCCC-eeCCHHHHHHHHHHHHHcCCEEEEEccch-hhC-h-hhhhccccc
Confidence 3667777764 23345556666633244455 45678899999999999999999998885 321 1 110 00
Q ss_pred ccCC-----------CcceeeehhccCCCccchheeEe--CHHHHhhh
Q 005009 677 LLGC-----------VPDIACYGKLLTGGVIPLAATLA--TNAVFDSF 711 (719)
Q Consensus 677 ~~gv-----------~PDIvtlgK~LggG~~Plsavl~--~~~i~~~~ 711 (719)
+.+. -.|. |++|+.-.+..|+|.+++ ++++++..
T Consensus 228 ~~~~~i~ei~~e~~~~aD~-~~~S~~Kd~~~~~GG~l~~~d~~l~~k~ 274 (450)
T TIGR02618 228 YEDKSIAEILKEMMSYADG-CTMSGKKDCLVNIGGFLCMNDDEMFQSA 274 (450)
T ss_pred ccCCCHHHHHHHHhccCcE-EEEeeccCCCCCCceEEEeCCHHHHHHH
Confidence 1121 2355 777888544478888888 66666653
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0015 Score=79.44 Aligned_cols=181 Identities=13% Similarity=0.061 Sum_probs=110.8
Q ss_pred ChHHHHHHHHHHhccCCCCCCeE-EEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCc
Q 005009 442 YEPALECAELLLQGVGKGWASRA-YFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (719)
Q Consensus 442 ~~~~~~Lae~L~~~~~~~~~~rv-~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t 520 (719)
.+...+|.+.|++++| ++.+ ++-+||+.|+-+++... |.|+..+|. +.|+ ++....+-||..
T Consensus 542 lq~i~elq~~l~eLtG---md~~Sl~p~sGA~gE~A~Lmai-r~yh~~~Ge------------~~r~-~vLIp~saHgtN 604 (954)
T PRK12566 542 RAMIDELEAWLCAITG---FDAICMQPNSGAQGEYAGLLAI-RRYHRSRGQ------------SQRD-ICLIPSSAHGTN 604 (954)
T ss_pred HHHHHHHHHHHHHHHC---CCeEeecCCchHHHHHHHHHHH-HHHHHhcCC------------CCCC-EEEecccccccC
Confidence 4456789999999998 4555 44569999888888887 888777664 4454 455556778766
Q ss_pred cccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHH
Q 005009 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (719)
Q Consensus 521 ~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~ 600 (719)
..++...|. ..+.+| .+ .+.. -|
T Consensus 605 pasa~~~Gi------------------------------eVv~Vp--------------~D-~~G~----iD-------- 627 (954)
T PRK12566 605 PASAQMAGM------------------------------RVVIVE--------------CD-PDGN----VD-------- 627 (954)
T ss_pred HHHHHHCCC------------------------------EEEEec--------------cC-CCCC----cC--------
Confidence 544332221 111122 00 0000 01
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEecccc-CccccCccccccccC
Q 005009 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLLG 679 (719)
Q Consensus 601 ~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqT-GfGRtG~~~a~e~~g 679 (719)
.+.|++.+++ ..++++||++--. ...|++.. -+++|.++|+++|+++++|=++. +.+.... -. .
T Consensus 628 le~L~a~I~~-----~~~~laaVmiT~P-nt~Gv~e~----~V~eI~~iah~~Galv~vDgA~~~a~~~l~~---Pg--~ 692 (954)
T PRK12566 628 LDDLKAKAAA-----AGDRLSCLMITYP-STHGVYEE----GIREICEVVHQHGGQVYMDGANLNAQVGLAR---PA--D 692 (954)
T ss_pred HHHHHHHhhc-----cCCCEEEEEEEec-CcCceecc----hHHHHHHHHHHcCCEEEEEeeChhhccCCCC---hh--h
Confidence 3567777763 3568888887643 33344433 38999999999999999999996 2211111 01 2
Q ss_pred CCcceeeeh--hccC----CCccc-hheeEeCHHHHhhhc
Q 005009 680 CVPDIACYG--KLLT----GGVIP-LAATLATNAVFDSFV 712 (719)
Q Consensus 680 v~PDIvtlg--K~Lg----gG~~P-lsavl~~~~i~~~~~ 712 (719)
+-.|++++. |.++ +| .| ++.+.+++++...+.
T Consensus 693 ~GADi~~~s~HKtf~~P~G~G-GP~vG~iav~~~L~pfLp 731 (954)
T PRK12566 693 IGADVSHMNLHKTFCIPHGGG-GPGMGPIGVRAHLAPFVA 731 (954)
T ss_pred cCCCEEEecCCcccCcCccCC-CCccchhhhhhhhhhhcc
Confidence 346998765 8664 45 45 555577776666554
|
|
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0073 Score=64.36 Aligned_cols=37 Identities=16% Similarity=0.157 Sum_probs=30.6
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..+.+.++| -+|+|||++++.|+..+. ++|++|...-
T Consensus 71 ~~~vi~l~G-~~G~GKTTt~akLA~~l~-----~~g~~V~li~ 107 (272)
T TIGR00064 71 KPNVILFVG-VNGVGKTTTIAKLANKLK-----KQGKSVLLAA 107 (272)
T ss_pred CCeEEEEEC-CCCCcHHHHHHHHHHHHH-----hcCCEEEEEe
Confidence 456788888 599999999999999994 6788887654
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00097 Score=74.66 Aligned_cols=171 Identities=13% Similarity=0.081 Sum_probs=108.2
Q ss_pred CCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCccc
Q 005009 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (719)
Q Consensus 439 ~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG 518 (719)
...++....|+++|+++-+. +.+++++||..|+.+++...+ +.| ..||+....|+|
T Consensus 58 R~~nPt~~~le~~la~LEg~---~~a~~~~SGmaAi~~~~~~ll-----~~G----------------D~Vv~~~~~Yg~ 113 (395)
T PRK08114 58 RRGTLTHFSLQEAMCELEGG---AGCALYPCGAAAVANAILAFV-----EQG----------------DHVLMTGTAYEP 113 (395)
T ss_pred CCCChhHHHHHHHHHHHhCC---CeEEEEhHHHHHHHHHHHHHc-----CCC----------------CEEEEeCCCcHH
Confidence 34577888999999997653 688899999999999887542 122 257766666655
Q ss_pred CccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHH
Q 005009 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (719)
Q Consensus 519 ~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~ 598 (719)
. ...+.-. .+.+|.- + ..++ ..|
T Consensus 114 t-~~l~~~~-------------l~~~Gi~-----v------~~vd----------------~~d---------------- 136 (395)
T PRK08114 114 T-QDFCSKI-------------LSKLGVT-----T------TWFD----------------PLI---------------- 136 (395)
T ss_pred H-HHHHHHH-------------HHhcCcE-----E------EEEC----------------CCC----------------
Confidence 3 2222100 0000000 0 0000 011
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcC--CcEEEeccccCccccCcccccc
Q 005009 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK--IPVIFDEVFTGFWRLGVETTAD 676 (719)
Q Consensus 599 ~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~g--ilLI~DEVqTGfGRtG~~~a~e 676 (719)
.+.+++.|. .+...|++|.+ .+..|.+.+ +++|.++|+++| +++|+|.+++ +|.. ++
T Consensus 137 --~~~l~~~l~--------~~TrlV~~Etp-sNp~~~v~D----I~~Ia~ia~~~g~g~~lvVDnT~a----~p~~--~~ 195 (395)
T PRK08114 137 --GADIAKLIQ--------PNTKVVFLESP-GSITMEVHD----VPAIVAAVRSVNPDAVIMIDNTWA----AGVL--FK 195 (395)
T ss_pred --HHHHHHhcC--------CCceEEEEECC-CCCCCEeec----HHHHHHHHHHhCCCCEEEEECCCc----cccc--cC
Confidence 134666664 24679999997 788888888 999999999985 9999999995 2333 44
Q ss_pred ccCCCcceee--ehhccCCC-ccchheeEeCHHHHhhh
Q 005009 677 LLGCVPDIAC--YGKLLTGG-VIPLAATLATNAVFDSF 711 (719)
Q Consensus 677 ~~gv~PDIvt--lgK~LggG-~~Plsavl~~~~i~~~~ 711 (719)
-...-.|+++ .-|.|+|. =+=.|+++.++++++.+
T Consensus 196 pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l 233 (395)
T PRK08114 196 ALDFGIDISIQAGTKYLVGHSDAMIGTAVANARCWEQL 233 (395)
T ss_pred HHHcCCcEEEEcCcccccCCCcceeEEEEcCHHHHHHH
Confidence 4444589885 67988773 12345566677665533
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0087 Score=67.31 Aligned_cols=90 Identities=17% Similarity=0.217 Sum_probs=60.9
Q ss_pred cEEEEEEc-cccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccc-cccCC-Cccee--eehhccC-
Q 005009 619 CIGALIIE-PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA-DLLGC-VPDIA--CYGKLLT- 692 (719)
Q Consensus 619 ~iAAvIvE-PViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~-e~~gv-~PDIv--tlgK~Lg- 692 (719)
++.+|++- | +.=.|.+. +.+-+++|.++|++||+++|.||+...|--.+..-.+ +..+. ..+|+ +|||.+|
T Consensus 179 ~~k~i~l~nP--~NPTG~v~-s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~~I~i~SfSK~~g~ 255 (410)
T PRK06290 179 KAKLLYLNYP--NNPTGAVA-TKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEIHSLSKAYNM 255 (410)
T ss_pred cceEEEEECC--CCCCCcCC-CHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCccccEEEEeechhhcCC
Confidence 34555555 7 45556655 7888999999999999999999999765211221111 11111 12343 7999996
Q ss_pred CCccchheeEeCHHHHhhhc
Q 005009 693 GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 693 gG~~Plsavl~~~~i~~~~~ 712 (719)
.| +=+|.+++++++++.+.
T Consensus 256 ~G-lRiG~ii~~~~l~~~l~ 274 (410)
T PRK06290 256 TG-WRLAFVVGNELIVKAFA 274 (410)
T ss_pred ch-hheEeEEeCHHHHHHHH
Confidence 57 67788999999988764
|
|
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0081 Score=67.99 Aligned_cols=83 Identities=16% Similarity=0.153 Sum_probs=49.3
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHH---Hhhc-CCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCC-C---
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDL---YRPF-RLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHG-L--- 291 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dl---a~~l-~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~-~--- 291 (719)
.+|+|||.++|-+. . +.....++ .+.. -..++||++...| ..++...+.+.. .+++.|+|+|+.. .
T Consensus 183 ~~DvVIIDTaGrl~--~-d~~lm~eL~~i~~~v~p~evllVlda~~g--q~av~~a~~F~~-~~~i~giIlTKlD~~~rg 256 (433)
T PRK10867 183 GYDVVIVDTAGRLH--I-DEELMDELKAIKAAVNPDEILLVVDAMTG--QDAVNTAKAFNE-ALGLTGVILTKLDGDARG 256 (433)
T ss_pred CCCEEEEeCCCCcc--c-CHHHHHHHHHHHHhhCCCeEEEEEecccH--HHHHHHHHHHHh-hCCCCEEEEeCccCcccc
Confidence 49999999999543 2 12222222 2222 2357999997543 344444444443 4788999999983 2
Q ss_pred CCHHHHHHhhcCCCcEEec
Q 005009 292 VNEVPLMSYLRNRVPVLVL 310 (719)
Q Consensus 292 ~~~~~l~~~~~~~~pvlgl 310 (719)
.....+...+ ++|+..+
T Consensus 257 G~alsi~~~~--~~PI~fi 273 (433)
T PRK10867 257 GAALSIRAVT--GKPIKFI 273 (433)
T ss_pred cHHHHHHHHH--CcCEEEE
Confidence 2344455555 8998663
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0088 Score=66.66 Aligned_cols=85 Identities=19% Similarity=0.199 Sum_probs=56.4
Q ss_pred EEEEEEccccccCCccccCCHHHHHHHHHHHHh------cCCcEEEeccccCccccCccccccccCCCcc-ee--eehhc
Q 005009 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQN------RKIPVIFDEVFTGFWRLGVETTADLLGCVPD-IA--CYGKL 690 (719)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k------~gilLI~DEVqTGfGRtG~~~a~e~~gv~PD-Iv--tlgK~ 690 (719)
+.+|++-.. +.-.|... |.+-+++|.++|++ ||+++|.||+...|-..|.... ......+. ++ +++|.
T Consensus 169 ~~~v~~~~p-~NPtG~~~-~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~-~~~~~~~~~i~~~S~SK~ 245 (394)
T PRK06836 169 TKAVIINSP-NNPTGVVY-SEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVP-YIFKYYDNSIVVYSFSKS 245 (394)
T ss_pred ceEEEEeCC-CCCCCcCC-CHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCC-ChHHccCcEEEEecchhh
Confidence 445555443 55566655 67888999999999 9999999999987632232111 00111123 33 58999
Q ss_pred cC-CCccchheeEeCHHHH
Q 005009 691 LT-GGVIPLAATLATNAVF 708 (719)
Q Consensus 691 Lg-gG~~Plsavl~~~~i~ 708 (719)
+| .| +-+|.+++++++.
T Consensus 246 ~~~pG-lRiG~~~~~~~~~ 263 (394)
T PRK06836 246 LSLPG-ERIGYIAVNPEME 263 (394)
T ss_pred ccCcc-eeeEEEecCHHHh
Confidence 98 68 6888899988763
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.007 Score=67.93 Aligned_cols=80 Identities=23% Similarity=0.341 Sum_probs=51.6
Q ss_pred EEEEEE-ccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc-ccccccCCCcc-ee--eehhccC-C
Q 005009 620 IGALII-EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPD-IA--CYGKLLT-G 693 (719)
Q Consensus 620 iAAvIv-EPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~-~a~e~~gv~PD-Iv--tlgK~Lg-g 693 (719)
+.+|++ -| +.-.|... +.+-+++|.++|++||+++|.||+...|-..|.. .....+.-..+ |+ +|+|.+| .
T Consensus 178 ~~~i~~~~p--~NPtG~~~-s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~p 254 (412)
T PTZ00433 178 TKALIMTNP--SNPCGSNF-SRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVPRVILGGTAKNLVVP 254 (412)
T ss_pred ceEEEEeCC--CCCCCccc-CHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCCCceEEEccchhhcCCC
Confidence 344444 55 45556544 6788899999999999999999999876333321 11111111112 33 6899995 5
Q ss_pred CccchheeEe
Q 005009 694 GVIPLAATLA 703 (719)
Q Consensus 694 G~~Plsavl~ 703 (719)
| +=+|.+++
T Consensus 255 G-lRlG~~i~ 263 (412)
T PTZ00433 255 G-WRLGWLLL 263 (412)
T ss_pred C-eeEEEEEE
Confidence 7 68888886
|
|
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0011 Score=74.98 Aligned_cols=58 Identities=17% Similarity=0.169 Sum_probs=44.1
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEc-cccccCCccccCCHHHHHHHHHHHHhcCCcEEEecccc
Q 005009 601 SSYISQNLLQNPGLKVSGCIGALIIE-PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT 664 (719)
Q Consensus 601 ~~~le~~l~~~~~~~~~~~iAAvIvE-PViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqT 664 (719)
.+.|++.+.+ .+..++++|+++ |. ...||. +.+.+.+++++++|++||+.||.|+++.
T Consensus 138 ~e~Le~~I~~----~~~~~~~~I~v~~p~-N~~gG~-~~s~~~l~~i~eia~~~gi~li~DaAr~ 196 (431)
T cd00617 138 VAKLEKLIDE----VGAENIPYIVLTITN-NTAGGQ-PVSMANLREVRELAHKYGIPVVLDAARF 196 (431)
T ss_pred HHHHHHHhCc----ccCCCccEEEEECCc-CCCCCc-cCCHHHHHHHHHHHHHcCCEEEEEchhh
Confidence 3667777763 234568888887 43 334564 5579999999999999999999999975
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.01 Score=66.01 Aligned_cols=89 Identities=13% Similarity=0.160 Sum_probs=58.1
Q ss_pred EEEE-EEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccC--ccc----cccccCC--Cccee---ee
Q 005009 620 IGAL-IIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG--VET----TADLLGC--VPDIA---CY 687 (719)
Q Consensus 620 iAAv-IvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG--~~~----a~e~~gv--~PDIv---tl 687 (719)
+.++ +.-| +.=.|.+. +.+-+++|.++|++|++++|.||+...|-..+ ... .....+. .+.++ +|
T Consensus 166 ~k~i~l~~p--~NPtG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~ 242 (393)
T TIGR03538 166 CQLLFVCSP--GNPTGAVL-SLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSL 242 (393)
T ss_pred ceEEEEeCC--CCCcCccc-CHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecc
Confidence 3444 4456 45556644 78899999999999999999999997653222 111 1111221 12233 79
Q ss_pred hhccC-CCccchheeEeCHHHHhhhc
Q 005009 688 GKLLT-GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 688 gK~Lg-gG~~Plsavl~~~~i~~~~~ 712 (719)
+|..+ .| +=+|.+++++++.+.+.
T Consensus 243 SK~~~~~G-lRvG~~i~~~~l~~~~~ 267 (393)
T TIGR03538 243 SKRSNLPG-LRSGFVAGDAEILKAFL 267 (393)
T ss_pred hhhcCCcc-cceEEEecCHHHHHHHH
Confidence 99754 46 67788999998877653
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0023 Score=70.38 Aligned_cols=86 Identities=20% Similarity=0.319 Sum_probs=59.3
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccc-ccccCCCccee---eehhccC-C
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADLLGCVPDIA---CYGKLLT-G 693 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a-~e~~gv~PDIv---tlgK~Lg-g 693 (719)
....++.-| +.=.|.+.+ -++|.++|+++++ +|+||+...|-..+..-. .....-.+.++ +|+|.+| .
T Consensus 149 ~~~~~l~nP--~NPTG~~~~----~~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~ 221 (360)
T PRK07392 149 NDGLLLNNP--HNPTGKLWS----REAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLP 221 (360)
T ss_pred CCEEEEeCC--CCCCCCCcC----HHHHHHHHHHCCE-EEEECchhhhccCccccchHHHhhcCCCEEEEEechhhhcCC
Confidence 345666677 555677766 4578889999986 666999988855443211 11112223344 7899999 8
Q ss_pred CccchheeEeCHHHHhhhc
Q 005009 694 GVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~ 712 (719)
| +-+|.+++++++++.+.
T Consensus 222 G-lRiG~~v~~~~~~~~~~ 239 (360)
T PRK07392 222 G-LRLGYAIAHPDRLQRWQ 239 (360)
T ss_pred c-hheeeeeCCHHHHHHHH
Confidence 9 79999999999988765
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0031 Score=77.82 Aligned_cols=180 Identities=14% Similarity=0.114 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHhccCCCCCCeEEE-eCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCcc
Q 005009 443 EPALECAELLLQGVGKGWASRAYF-SDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTL 521 (719)
Q Consensus 443 ~~~~~Lae~L~~~~~~~~~~rv~f-~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~ 521 (719)
+...++.+.|++++|. +.+.| .|+|+.|+.++|..+ |.|..++|. ..| .+|....+-||+..
T Consensus 542 ~~i~e~q~~l~eltG~---d~~sl~~~~ga~ge~agL~a~-r~~~~~~G~------------~~r-~~vlis~~aH~snp 604 (954)
T PRK05367 542 ELIDQLEAWLAEITGY---DAVSLQPNAGAQGEYAGLLAI-RAYHESRGE------------GHR-DVCLIPSSAHGTNP 604 (954)
T ss_pred HHHHHHHHHHHHHHCC---CCEEECccHHHHHHHHHHHHH-HHHhhccCC------------CCC-CEEEEEchhhhhhH
Confidence 4566888899999884 44544 567888888888555 777655442 223 45666678888766
Q ss_pred ccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHH
Q 005009 522 GAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYS 601 (719)
Q Consensus 522 galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~ 601 (719)
.++...|.. +..++.... .. -| .
T Consensus 605 ~sa~~~G~~----------------------------vv~v~~d~~-------------G~--------iD--------~ 627 (954)
T PRK05367 605 ASAVMAGMK----------------------------VVVVACDEN-------------GN--------ID--------L 627 (954)
T ss_pred HHHHHCCCE----------------------------EEEECCCCC-------------CC--------cC--------H
Confidence 554433211 011111100 00 01 3
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEc-cccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIE-PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvE-PViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv 680 (719)
+.|++.+++ +..++++|++- |- ..|++..+ +++|.++|+++|+++++|-++.+ +-.|.- .-.. .
T Consensus 628 ~~L~~~i~~-----~~~~la~V~it~ps--t~G~~e~~----I~eI~~i~h~~G~~v~VDgA~~~-al~~l~-~pg~--~ 692 (954)
T PRK05367 628 DDLRAKAEE-----HADNLAAIMITYPS--THGVFEET----IREICEIVHEHGGQVYLDGANMN-AQVGLA-RPGD--I 692 (954)
T ss_pred HHHHHHHhc-----cCCCeEEEEEEcCC--CCeeecCC----HHHHHHHHHHcCCEEEEECcChh-hccCCC-Chhh--c
Confidence 566777752 23467776654 43 33444455 89999999999999999999962 111211 0011 2
Q ss_pred Ccceeeeh--hccC----CCccc-hheeEeCHHHHhhhc
Q 005009 681 VPDIACYG--KLLT----GGVIP-LAATLATNAVFDSFV 712 (719)
Q Consensus 681 ~PDIvtlg--K~Lg----gG~~P-lsavl~~~~i~~~~~ 712 (719)
-.|+++++ |.++ +| -| +|.+.+++.+...+-
T Consensus 693 GADi~~~s~HK~f~~P~G~G-GPg~G~l~vr~~l~p~lp 730 (954)
T PRK05367 693 GADVSHLNLHKTFCIPHGGG-GPGVGPIGVKAHLAPFLP 730 (954)
T ss_pred CCCEEEecCcccCCCCcCCC-CCceEEEeecccccccCC
Confidence 36998775 8774 33 24 445666766665543
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.016 Score=65.00 Aligned_cols=82 Identities=18% Similarity=0.163 Sum_probs=55.8
Q ss_pred CcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc-cccccCCCccee---eehhc-cC
Q 005009 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPDIA---CYGKL-LT 692 (719)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~-a~e~~gv~PDIv---tlgK~-Lg 692 (719)
...+.+++-| +.-.|.+. +.+-+++|.++|++|++++|.||+...|-..|..+ ....+.-.+.++ +|||. ..
T Consensus 170 ~~~~~~~~nP--~NPTG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~ 246 (409)
T PLN00143 170 NTIAMVIINP--GNPCGSVY-SYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSISKRWMI 246 (409)
T ss_pred CCEEEEEECC--CCCCCCcc-CHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcccCcEEEEccchhhcCC
Confidence 3456777788 44556655 78889999999999999999999998764334321 111121112233 78999 44
Q ss_pred CCccchheeEe
Q 005009 693 GGVIPLAATLA 703 (719)
Q Consensus 693 gG~~Plsavl~ 703 (719)
.| +-+|.+++
T Consensus 247 pG-lRvG~~v~ 256 (409)
T PLN00143 247 PG-WGLGWLVT 256 (409)
T ss_pred Cc-cceEEEEe
Confidence 57 68888888
|
|
| >cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0035 Score=63.87 Aligned_cols=90 Identities=9% Similarity=0.067 Sum_probs=51.1
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHH---HHHHHHHHhC-CCcEEEEEEccCCCC-CH
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGT---ISAYESLKLR-GYDVVAVVFEDHGLV-NE 294 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~---~~~~~~l~~~-~~~v~gvi~N~~~~~-~~ 294 (719)
.||+|||-+.|++..... ...++...--.+|+|+....-++..+ +..++.++.. +.++.|+|+|++... ..
T Consensus 116 ~yD~ilID~~g~~~~~~~----~~~l~~~~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~~~~ 191 (212)
T cd02117 116 DLDVVLYDVLGDVVCGGF----AMPIREGKADEIYIVTSGEFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTDRET 191 (212)
T ss_pred CCCEEEEecCCCceeccc----ccccccccCcEEEEEecccHHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCccHH
Confidence 499999999654421110 01111111225677777665555444 4444444433 678999999999543 23
Q ss_pred HHHHHhhcC-CCcEEe-cCCC
Q 005009 295 VPLMSYLRN-RVPVLV-LPPL 313 (719)
Q Consensus 295 ~~l~~~~~~-~~pvlg-lP~~ 313 (719)
..+++..+. +.|+++ ||+.
T Consensus 192 ~~~~~~~~~~~~~vl~~IP~d 212 (212)
T cd02117 192 ELIDAFAERLGTQVIHFVPRD 212 (212)
T ss_pred HHHHHHHHHcCCCEEEecCCC
Confidence 333333333 899999 8863
|
Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate. |
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.005 Score=67.69 Aligned_cols=212 Identities=14% Similarity=0.152 Sum_probs=121.2
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlK 479 (719)
.++|+..+. ..+|. +|.+.+++.+.+..+... ......+|-+.+++..+-. -+.++++++++++...+++
T Consensus 20 ~~~~l~~~~--~~~~~--p~~~~~a~~~~~~~~~~Y-----~~~~~~~lr~~ia~~~~~~-~~~i~it~Ga~~~l~~~~~ 89 (354)
T PRK06358 20 MILDFSANI--NPLGV--PESLKQAITENLDKLVEY-----PDPDYLELRKRIASFEQLD-LENVILGNGATELIFNIVK 89 (354)
T ss_pred ceEEecCCC--CCCCC--CHHHHHHHHHHHHhhhcC-----CCccHHHHHHHHHHHhCCC-hhhEEECCCHHHHHHHHHH
Confidence 478886643 33444 689999999876543322 1122345666677665432 3689999999999988876
Q ss_pred HHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcc
Q 005009 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (719)
Q Consensus 480 lA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (719)
.. . + .+|+..+-+|+.....+. ..|.
T Consensus 90 ~~-----~----------------~--~~v~i~~P~y~~~~~~~~-~~g~------------------------------ 115 (354)
T PRK06358 90 VT-----K----------------P--KKVLILAPTFAEYERALK-AFDA------------------------------ 115 (354)
T ss_pred Hh-----C----------------C--CcEEEecCChHHHHHHHH-HcCC------------------------------
Confidence 53 1 1 257777778876432221 1110
Q ss_pred eeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCC
Q 005009 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (719)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (719)
..+++| ... ++.+ ..| +.+.+.+. ...-+.++.-| +.-.|... +
T Consensus 116 ~~~~~~--------------~~~-~~~~--~~d---------~~~~~~~~-------~~~~~v~~~~P--~NPtG~~~-~ 159 (354)
T PRK06358 116 EIEYAE--------------LTE-ETNF--AAN---------EIVLEEIK-------EEIDLVFLCNP--NNPTGQLI-S 159 (354)
T ss_pred eeEEEe--------------Ccc-ccCC--Ccc---------HHHHHhhc-------cCCCEEEEeCC--CCCCCCcc-C
Confidence 011111 000 0000 000 01112221 11122356677 45556644 7
Q ss_pred HHHHHHHHHHHHhcCCcEEEeccccCccccCccc-cccccCCCccee---eehhccC-CCccchheeEeC-HHHHhhhc
Q 005009 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPDIA---CYGKLLT-GGVIPLAATLAT-NAVFDSFV 712 (719)
Q Consensus 640 ~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~-a~e~~gv~PDIv---tlgK~Lg-gG~~Plsavl~~-~~i~~~~~ 712 (719)
.+-+++|.++|++||+++|.||+...|-..+... ......-.+.++ +|+|.+| .| +-+|.+++. +.+.+.+.
T Consensus 160 ~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G-~RiG~lv~~~~~~~~~~~ 237 (354)
T PRK06358 160 KEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIPG-LRLGYGLTSNKNLAEKLL 237 (354)
T ss_pred HHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEEechhhccCcc-hhheeeecCCHHHHHHHH
Confidence 8889999999999999999999998774333211 111122223444 7999999 88 799999874 67766654
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.015 Score=65.06 Aligned_cols=77 Identities=16% Similarity=0.256 Sum_probs=51.0
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc-ccccccCCCcc--ee---eehhccC-C
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPD--IA---CYGKLLT-G 693 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~-~a~e~~gv~PD--Iv---tlgK~Lg-g 693 (719)
+.+++-| +.-.|.+. +.+-+++|.++|++||+++|.||+...|-..+.. .... ...+| ++ +|+|.+| .
T Consensus 171 ~v~l~~P--~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~--~~~~~~~vi~~~S~SK~~~~p 245 (404)
T PRK09265 171 AIVIINP--NNPTGAVY-SKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIA--SLAPDLLCVTFNGLSKAYRVA 245 (404)
T ss_pred EEEEECC--CCCCCcCC-CHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHH--HcCCCceEEEEecchhhccCc
Confidence 3445556 45567655 6788999999999999999999999876322321 1111 12233 22 5799995 4
Q ss_pred CccchheeEe
Q 005009 694 GVIPLAATLA 703 (719)
Q Consensus 694 G~~Plsavl~ 703 (719)
| +-+|.+++
T Consensus 246 G-lRiG~~v~ 254 (404)
T PRK09265 246 G-FRVGWMVL 254 (404)
T ss_pred c-cceEEEEE
Confidence 7 67888885
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0063 Score=66.91 Aligned_cols=91 Identities=14% Similarity=0.080 Sum_probs=62.0
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccc-ccc--cCCC-cc-ee--eehhcc
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADL--LGCV-PD-IA--CYGKLL 691 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a-~e~--~gv~-PD-Iv--tlgK~L 691 (719)
++.+|++... +.-.|.+. +.+-+++|.++|++||+++|.||++..|.-.|.... .+. .+.. +. |+ +|+|.+
T Consensus 148 ~~~~v~~~~p-~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 225 (364)
T PRK07865 148 RPALIWLNSP-SNPTGRVL-GVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQS 225 (364)
T ss_pred cceEEEEcCC-CCCCCccC-CHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhcc
Confidence 4567777654 66667665 578899999999999999999999987643343221 111 0111 12 32 699998
Q ss_pred C-CCccchheeEeCHHHHhhhc
Q 005009 692 T-GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 692 g-gG~~Plsavl~~~~i~~~~~ 712 (719)
| .| +=+|.+++++++.+.+.
T Consensus 226 ~~~G-lRiG~i~~~~~~~~~~~ 246 (364)
T PRK07865 226 NLAG-YRAGFVAGDPALVAELL 246 (364)
T ss_pred CCCc-eeeEEEecCHHHHHHHH
Confidence 5 45 56777899999887664
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0026 Score=66.36 Aligned_cols=180 Identities=15% Similarity=0.137 Sum_probs=122.5
Q ss_pred CChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCc
Q 005009 441 VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (719)
Q Consensus 441 ~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t 520 (719)
..++..++-+.|++++| ++.+.+++..-||-.++|... .++.+.|+.++.-|=.|
T Consensus 59 ~kPpI~~F~~dlaeFlg---~D~~R~t~GARe~KfavMhal----------------------~~~gd~vV~D~~aHYtt 113 (382)
T COG1103 59 TKPPIKDFLEDLAEFLG---MDEVRVTAGAREAKFAVMHAL----------------------CKEGDWVVVDSLAHYTT 113 (382)
T ss_pred cCCcHHHHHHHHHHHhC---CceeeecccchhhHHHHHHHh----------------------ccCCCEEEEcCcchHHH
Confidence 35677888899999998 689999999999988776654 23457899999999877
Q ss_pred cccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHH
Q 005009 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (719)
Q Consensus 521 ~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~ 600 (719)
.-+.--.|...+ ..|.. .+|+.. -..+.|
T Consensus 114 yvAAEragl~v~----------------eVp~t---------g~Pey~--------------------------i~~e~y 142 (382)
T COG1103 114 YVAAERAGLNVA----------------EVPNT---------GYPEYK--------------------------ITPEGY 142 (382)
T ss_pred HHHHHhcCCeEE----------------ecCCC---------CCCceE--------------------------ecHHHH
Confidence 766554432110 11111 112111 011344
Q ss_pred HHHHHHHHhcCCCCCCCCcEE-EEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccC
Q 005009 601 SSYISQNLLQNPGLKVSGCIG-ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (719)
Q Consensus 601 ~~~le~~l~~~~~~~~~~~iA-AvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~g 679 (719)
.+.+++..+ ++++.++ |++.-| -|+-|.+.. .+++.++|+++|++|++.=..| .||.- . ..-.
T Consensus 143 ~~viee~~~-----~~g~~~~lallTh~--Dg~YGNl~D----akkva~ic~e~gvPlllN~AYt-~Grmp---v-s~ke 206 (382)
T COG1103 143 AEVIEEVKD-----EGGDPPALALLTHV--DGEYGNLAD----AKKVAKICREYGVPLLLNCAYT-VGRMP---V-SGKE 206 (382)
T ss_pred HHHHHHHHh-----ccCCCceEEEEecc--CCCcCCchh----hHHHHHHHHHcCCceEeeccee-ecccc---c-cccc
Confidence 566776666 3445555 555555 588887776 7899999999999999998887 45532 2 2234
Q ss_pred CCcceeeeh--hccCCCccchheeEeCHHHHhhhcC
Q 005009 680 CVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 680 v~PDIvtlg--K~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
+.+|.++=+ |+++.. .|+|.+.++++..+....
T Consensus 207 ~g~DFiVgSGHKsmAAs-~PiGvl~~~eE~ae~V~r 241 (382)
T COG1103 207 IGADFIVGSGHKSMAAS-APIGVLAMSEEWAEIVLR 241 (382)
T ss_pred cCCCEEEecCccchhcc-CCeeEEeehhHHHHHHHh
Confidence 789988754 888765 599999999998886543
|
|
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.009 Score=67.56 Aligned_cols=83 Identities=18% Similarity=0.161 Sum_probs=48.5
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHH---hhc-CCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCC-C---
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLY---RPF-RLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHG-L--- 291 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla---~~l-~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~-~--- 291 (719)
.+|+|||.++|-.. . +.....++. +.+ -..++||++...| ..++...+.+. ..+++.|+|+|+.. .
T Consensus 182 ~~DvVIIDTaGr~~--~-d~~l~~eL~~i~~~~~p~e~lLVvda~tg--q~~~~~a~~f~-~~v~i~giIlTKlD~~~~~ 255 (428)
T TIGR00959 182 GFDVVIVDTAGRLQ--I-DEELMEELAAIKEILNPDEILLVVDAMTG--QDAVNTAKTFN-ERLGLTGVVLTKLDGDARG 255 (428)
T ss_pred CCCEEEEeCCCccc--c-CHHHHHHHHHHHHhhCCceEEEEEeccch--HHHHHHHHHHH-hhCCCCEEEEeCccCcccc
Confidence 49999999999533 2 222233332 222 2347999997644 33333333333 34678999999983 2
Q ss_pred CCHHHHHHhhcCCCcEEec
Q 005009 292 VNEVPLMSYLRNRVPVLVL 310 (719)
Q Consensus 292 ~~~~~l~~~~~~~~pvlgl 310 (719)
.....+...+ ++|+..+
T Consensus 256 G~~lsi~~~~--~~PI~fi 272 (428)
T TIGR00959 256 GAALSVRSVT--GKPIKFI 272 (428)
T ss_pred cHHHHHHHHH--CcCEEEE
Confidence 2344445555 8998664
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0027 Score=71.37 Aligned_cols=82 Identities=12% Similarity=0.058 Sum_probs=53.2
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceee--ehhccCC-Cc
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTG-GV 695 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvt--lgK~Lgg-G~ 695 (719)
+..+|++|-. ..-.|.+.. +++|.++|++||+++|+||++..-... ..+ ..-.|+++ ..|.++| |-
T Consensus 145 ~tklV~l~~P-~NPtG~v~d----l~~I~~la~~~gi~vIvD~a~a~~~~~-~pl-----~~gaDivv~S~tK~l~g~~~ 213 (405)
T PRK08776 145 SPKLVLIETP-SNPLLRITD----LRFVIEAAHKVGALTVVDNTFLSPALQ-KPL-----EFGADLVLHSTTKYINGHSD 213 (405)
T ss_pred CCeEEEEECC-CCCCCccCC----HHHHHHHHHHcCCEEEEECCCcccccC-Ccc-----cccCCEEEecCceeecCCCC
Confidence 4567777754 556676655 899999999999999999999632111 111 12358774 5698875 21
Q ss_pred cchheeEe-CHHHHhhh
Q 005009 696 IPLAATLA-TNAVFDSF 711 (719)
Q Consensus 696 ~Plsavl~-~~~i~~~~ 711 (719)
.-.|++++ ++++.+.+
T Consensus 214 ~~~G~vv~~~~~l~~~l 230 (405)
T PRK08776 214 VVGGAVVARDAELHQQL 230 (405)
T ss_pred ceEEEEEeCCHHHHHHH
Confidence 34555656 46666544
|
|
| >PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0031 Score=66.54 Aligned_cols=90 Identities=11% Similarity=0.064 Sum_probs=53.0
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHH----hCCCcEEEEEEccCCCCCHH
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLK----LRGYDVVAVVFEDHGLVNEV 295 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~----~~~~~v~gvi~N~~~~~~~~ 295 (719)
+||+|||-+.|++.+... .. .+..-+ -||+|.....-++..+...++.++ ..++++.|+|+|+... ..
T Consensus 117 ~yD~viIDt~g~~~~~~~---~~--~l~~AD-~viip~~~~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~--~~ 188 (270)
T PRK13185 117 DYDVILFDVLGDVVCGGF---AA--PLQYAD-YALIVTANDFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSAG--TD 188 (270)
T ss_pred cCCEEEEecCCCcccCcc---cc--hhhhCc-EEEEEecCchhhHHHHHHHHHHHHhhhhccCCCceEEEEeccCh--HH
Confidence 499999999654432210 01 111111 367777776666666555555544 3456789999999632 23
Q ss_pred HHHHhhcC-CCcEEe-cCCCCCCC
Q 005009 296 PLMSYLRN-RVPVLV-LPPLPQDS 317 (719)
Q Consensus 296 ~l~~~~~~-~~pvlg-lP~~~~~~ 317 (719)
.++++.+. +.++++ ||......
T Consensus 189 ~~~~~~~~~g~~vl~~Ip~~~~i~ 212 (270)
T PRK13185 189 LIDKFNEAVGLKVLAHVPDLDAIR 212 (270)
T ss_pred HHHHHHHHcCCCEEEECCCCcccC
Confidence 33444433 789999 88765543
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0023 Score=72.53 Aligned_cols=152 Identities=15% Similarity=0.108 Sum_probs=96.4
Q ss_pred CChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCc
Q 005009 441 VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (719)
Q Consensus 441 ~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t 520 (719)
.++...+|+++|+++.+. ..++.++||..|+..++...+ +.| ..||+....|.|..
T Consensus 59 ~nPtv~~lE~~la~leg~---~~av~~~SG~aAi~~al~all-----~~G----------------D~VI~~~~~Y~~T~ 114 (432)
T PRK06702 59 GNPTLAAFEQKLAELEGG---VGAVATASGQAAIMLAVLNIC-----SSG----------------DHLLCSSTVYGGTF 114 (432)
T ss_pred CCcHHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHhc-----CCC----------------CEEEECCCchHHHH
Confidence 367788999999998774 468889999999999997552 222 36888888887732
Q ss_pred cccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHH
Q 005009 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (719)
Q Consensus 521 ~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~ 600 (719)
.. +... .. ..|. + + .|-|. ..|
T Consensus 115 ~~-~~~~-l~------------~~Gi--~---v-------------------------~~vd~------~~d-------- 136 (432)
T PRK06702 115 NL-FGVS-LR------------KLGI--D---V-------------------------TFFNP------NLT-------- 136 (432)
T ss_pred HH-HHHH-HH------------HCCC--E---E-------------------------EEECC------CCC--------
Confidence 21 1100 00 0000 0 0 01110 000
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC
Q 005009 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (719)
Q Consensus 601 ~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv 680 (719)
.+.++++|. .+..+|++|.. ..-.+.+.. +++|.++|++||+++|+|++.. ....++-+..
T Consensus 137 ~~~l~~~I~--------~~Tk~I~~e~p-gnP~~~v~D----i~~I~~iA~~~gi~livD~T~~------tP~~~~pl~~ 197 (432)
T PRK06702 137 ADEIVALAN--------DKTKLVYAESL-GNPAMNVLN----FKEFSDAAKELEVPFIVDNTLA------TPYLCQAFEH 197 (432)
T ss_pred HHHHHHhCC--------cCCeEEEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEECCCC------chhhCChhhc
Confidence 245666664 24568889975 333344444 9999999999999999999962 3344443444
Q ss_pred Cccee--eehhccCC
Q 005009 681 VPDIA--CYGKLLTG 693 (719)
Q Consensus 681 ~PDIv--tlgK~Lgg 693 (719)
-.||+ .+.|-++|
T Consensus 198 GADIvv~S~TKy~~G 212 (432)
T PRK06702 198 GANIIVHSTTKYIDG 212 (432)
T ss_pred CCCEEEEccccccCC
Confidence 57887 57898886
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0091 Score=66.95 Aligned_cols=201 Identities=13% Similarity=0.128 Sum_probs=122.9
Q ss_pred CHHHHHHHHHhhhhcc-cccCCCCCChHHHHHHHHHHhccCCCC--CCeEEEeCChHHHHHHHHHHHHHHhhcccccccc
Q 005009 418 QIELARDMGYTAARFG-HVMFPENVYEPALECAELLLQGVGKGW--ASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVD 494 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~-~~~~~~~~~~~~~~Lae~L~~~~~~~~--~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~ 494 (719)
++.+.+|+.+.+.... +.+.....-+....+++++.+..+-.. .+.|+.++.++||.-.|+.... ..|
T Consensus 43 p~~i~~a~~~a~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~~~~a~~-----~pG---- 113 (393)
T COG0436 43 PEHIIEAAIEALEEGGTHYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFLALL-----NPG---- 113 (393)
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHHHHHHhc-----CCC----
Confidence 7789999999888753 322233445566677777776544111 1349999999999999988772 111
Q ss_pred ccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCc-----chhh
Q 005009 495 FLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP-----EWLY 569 (719)
Q Consensus 495 ~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P-----~~~~ 569 (719)
..||..+-+|=..... +.+.|. ..+++| +.|
T Consensus 114 ------------DeVlip~P~Y~~y~~~-~~~~gg------------------------------~~v~v~l~~~~~~f- 149 (393)
T COG0436 114 ------------DEVLIPDPGYPSYEAA-VKLAGG------------------------------KPVPVPLDEEENGF- 149 (393)
T ss_pred ------------CEEEEeCCCCcCHHHH-HHhcCC------------------------------EEEEEeCCcCccCC-
Confidence 2477776666442222 111111 111111 011
Q ss_pred hcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcE-EEEEEccccccCCccccCCHHHHHHHHH
Q 005009 570 SKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCI-GALIIEPVVHAAGGMHMVDPLFQRILVK 648 (719)
Q Consensus 570 ~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~i-AAvIvEPViqg~gG~~~pp~~fl~~Lr~ 648 (719)
..| .+.|++.+. + ++ +.++.-|- .-. |.+ .+++.+++|.+
T Consensus 150 --------------------~~d--------~~~l~~~i~-------~-ktk~i~ln~P~-NPT-Gav-~~~~~l~~i~~ 190 (393)
T COG0436 150 --------------------KPD--------LEDLEAAIT-------P-KTKAIILNSPN-NPT-GAV-YSKEELKAIVE 190 (393)
T ss_pred --------------------cCC--------HHHHHhhcC-------c-cceEEEEeCCC-CCc-CcC-CCHHHHHHHHH
Confidence 011 355666664 2 34 44445674 443 443 48999999999
Q ss_pred HHHhcCCcEEEeccccCccccCccccccccCCCc--c-ee---eehhccC-CCccchheeEeC-HHHHhhhc
Q 005009 649 ECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVP--D-IA---CYGKLLT-GGVIPLAATLAT-NAVFDSFV 712 (719)
Q Consensus 649 Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~P--D-Iv---tlgK~Lg-gG~~Plsavl~~-~~i~~~~~ 712 (719)
+|++||+.+|.|||..+|--.|..+.+ -..+.+ | .+ .|||..+ .| .=+|.+++. +++.+.+.
T Consensus 191 ~a~~~~i~ii~DEiY~~l~yd~~~~~s-~~~~~~~~~~~i~i~s~SK~~~mtG-wRvG~~v~~~~~l~~~~~ 260 (393)
T COG0436 191 LAREHDIIIISDEIYEELVYDGAEHPS-ILELAGARDRTITINSFSKTYGMTG-WRIGWVVGPPEELIAALR 260 (393)
T ss_pred HHHHcCeEEEEehhhhhcccCCCCcCC-HhhcCCCcceEEEEecccccccccc-cceeEeecChHHHHHHHH
Confidence 999999999999999999777741111 111223 3 22 5899997 46 577779988 77776653
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.01 Score=64.86 Aligned_cols=95 Identities=16% Similarity=0.170 Sum_probs=63.9
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccC-ccccccccC
Q 005009 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG-VETTADLLG 679 (719)
Q Consensus 601 ~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG-~~~a~e~~g 679 (719)
.+.||+.+.+ ...-.-+++-| +.-+|- +...+.|++|.+||.|||+.+|.||||.=+=-.| +.+.+..
T Consensus 147 ~~~LE~~~~~------~~vkl~iLCnP--HNP~Gr-vwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~-- 215 (388)
T COG1168 147 FDALEKAFVD------ERVKLFILCNP--HNPTGR-VWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFAS-- 215 (388)
T ss_pred HHHHHHHHhc------CCccEEEEeCC--CCCCCc-cccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhh--
Confidence 4678888863 22346777888 455553 5589999999999999999999999999774555 3333322
Q ss_pred CCcc-----eeee--hhccC-CCccchheeEeCHHH
Q 005009 680 CVPD-----IACY--GKLLT-GGVIPLAATLATNAV 707 (719)
Q Consensus 680 v~PD-----Ivtl--gK~Lg-gG~~Plsavl~~~~i 707 (719)
+.|+ |+|+ +|+.. .| +-.|.++.+.+-
T Consensus 216 ls~~~a~~~it~~saSKtFNlaG-L~~a~~Ii~n~~ 250 (388)
T COG1168 216 LSERFADNSITLTSASKTFNLAG-LKCAYIIISNRE 250 (388)
T ss_pred cChhhhcceEEEeeccccccchh-hhheeEEecCHH
Confidence 3333 3344 68875 56 566666655443
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.006 Score=67.79 Aligned_cols=84 Identities=14% Similarity=0.166 Sum_probs=55.3
Q ss_pred EEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcc-ee--eehhccC-CCc
Q 005009 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPD-IA--CYGKLLT-GGV 695 (719)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PD-Iv--tlgK~Lg-gG~ 695 (719)
+.+|++... +.-.|.+.+ .++++++++.. +++|+||++..|...+.... ...-.+. |+ +|+|.+| .|
T Consensus 176 ~~~v~l~~P-~NPTG~~~~----~~~l~~l~~~~-~~vi~DeaY~~~~~~~~~~~--~~~~~~~viv~~SfSK~~glaG- 246 (380)
T PLN03026 176 PKLLFLTSP-NNPDGSIIS----DDDLLKILELP-ILVVLDEAYIEFSTQESRMK--WVKKYDNLIVLRTFSKRAGLAG- 246 (380)
T ss_pred CcEEEEeCC-CCCCCCCCC----HHHHHHHHhcC-CEEEEECcchhhcCCcchHH--HHHhCCCEEEEecchHhhcCcc-
Confidence 445555543 666787776 56666777654 99999999987743222211 1111233 33 7999998 78
Q ss_pred cchheeEeCHHHHhhhc
Q 005009 696 IPLAATLATNAVFDSFV 712 (719)
Q Consensus 696 ~Plsavl~~~~i~~~~~ 712 (719)
+-+|.+++++++.+.+.
T Consensus 247 lRiGy~~~~~~~i~~l~ 263 (380)
T PLN03026 247 LRVGYGAFPLSIIEYLW 263 (380)
T ss_pred ccceeeecCHHHHHHHH
Confidence 68888999999988764
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0043 Score=68.69 Aligned_cols=211 Identities=8% Similarity=0.026 Sum_probs=121.6
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlK 479 (719)
..+|+..+. +.+|. +|++++++.+.+..... +...-..+|-+.|++..+-. -+.++++++++|+...+++
T Consensus 30 ~~i~l~~ne--n~~~~--~~~v~~a~~~~~~~~~~-----Yp~~g~~~Lr~aia~~~~~~-~~~I~vt~Gs~e~i~~~~~ 99 (366)
T PRK01533 30 SFVKLASNE--NPFGC--SPRVLDELQKSWLDHAL-----YPDGGATTLRQTIANKLHVK-MEQVLCGSGLDEVIQIISR 99 (366)
T ss_pred ceEEeCCCC--CCCCC--CHHHHHHHHHHHHhcCc-----CCCCCHHHHHHHHHHHhCCC-cceEEECCCHHHHHHHHHH
Confidence 677876643 34555 58999999887654322 11222345666777665533 3689999999999988887
Q ss_pred HHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcc
Q 005009 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (719)
Q Consensus 480 lA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (719)
... +.| ..|+..+-+|.+-...+ ...| .
T Consensus 100 ~l~-----~~g----------------d~vlv~~P~y~~~~~~~-~~~g------------------------------~ 127 (366)
T PRK01533 100 AVL-----KAG----------------DNIVTAGATFPQYRHHA-IIEG------------------------------C 127 (366)
T ss_pred Hhc-----CCC----------------CEEEEcCCcHHHHHHHH-HHcC------------------------------C
Confidence 651 111 25777766665532211 1111 1
Q ss_pred eeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCC
Q 005009 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (719)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (719)
..+++|. ++ . .-| .+.+++.+.+ ..-+.+|.-| +.-.|.+. +
T Consensus 128 ~v~~v~~--------------~~--~----~~d--------~~~l~~~~~~-------~~~~v~i~~P--~NPTG~~~-~ 169 (366)
T PRK01533 128 EVKEVAL--------------NN--G----VYD--------LDEISSVVDN-------DTKIVWICNP--NNPTGTYV-N 169 (366)
T ss_pred EEEEeec--------------CC--C----CcC--------HHHHHHHhCc-------CCcEEEEeCC--CCCCCCCc-C
Confidence 1111110 00 0 000 2455555531 1223445566 56667766 5
Q ss_pred HHHHHHHHHHHHhcCCcEEEeccccCccccCccc-cccccCCCccee---eehhccC-CCccchheeEeCHHHHhhhc
Q 005009 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 640 ~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~-a~e~~gv~PDIv---tlgK~Lg-gG~~Plsavl~~~~i~~~~~ 712 (719)
.+-+++|.++|++++ ++|+||+...|-.-+..- ......-.+.++ +|+|.+| .| +-+|.+++.+++.+.+.
T Consensus 170 ~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~G-lRiG~~i~~~~~~~~l~ 245 (366)
T PRK01533 170 DRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLAS-FRVGYAVGHEELIEKLN 245 (366)
T ss_pred HHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEEEEeCchHHhcChH-HHHhHHhCCHHHHHHHH
Confidence 677888888898876 577899997663222110 111111123333 7999998 78 68888999999988774
|
|
| >cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0036 Score=64.19 Aligned_cols=63 Identities=24% Similarity=0.079 Sum_probs=47.9
Q ss_pred CcEEEEeCCCCCCCCCCCCchhHHHHhhcCC----CEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccC
Q 005009 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRL----PGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDH 289 (719)
Q Consensus 221 ~d~vivEGagG~~~p~~~~~~~~dla~~l~~----pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~ 289 (719)
||+|||.+. |. .....+-+...+.. -+|+|+.....++.++...++.++..|.++.|+|+|++
T Consensus 114 yD~IIiD~p-----p~-~~~~~~l~~~~l~~~~~~~vllV~~p~~~s~~~~~~~l~~l~~~~~~~~glVlN~~ 180 (217)
T cd02035 114 YDVIVFDTA-----PT-GHTLRLLVRELLTDPERTSFRLVTLPEKLPLYETERAITELALYGIPVDAVVVNRV 180 (217)
T ss_pred CCEEEECCC-----Cc-hHHHHHHHHHHccCCCceEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCC
Confidence 999999983 22 11111222333332 48999999999999999999999999999999999987
|
This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence. |
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0046 Score=70.23 Aligned_cols=185 Identities=12% Similarity=0.070 Sum_probs=103.7
Q ss_pred ChHHHHHHHHHHhccCCCCCCeEEEeCChH-HHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCc
Q 005009 442 YEPALECAELLLQGVGKGWASRAYFSDNGS-TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (719)
Q Consensus 442 ~~~~~~Lae~L~~~~~~~~~~rv~f~~SGs-EA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t 520 (719)
.....+|.+.+++.+|-.....++++++|+ .|+..|+..+ |.. + ++...||.-..+ |=++
T Consensus 104 ~~l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~al-r~~-~----------------~~gd~VI~p~~t-h~S~ 164 (444)
T TIGR03531 104 YKLTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSAL-RHK-R----------------PKAKYVIWPRID-QKSC 164 (444)
T ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHc-CCc-C----------------CCCCEEEEECcC-hHHH
Confidence 344557777777777742233689999999 6888777766 321 0 111345555555 7767
Q ss_pred cccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHH
Q 005009 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (719)
Q Consensus 521 ~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~ 600 (719)
.-++.+.|... .++++ ...++.| + -|
T Consensus 165 ~kAi~~~G~~p--------------v~Vd~-----------~~d~~~~------------~---------iD-------- 190 (444)
T TIGR03531 165 IKAISTAGFEP--------------RVIET-----------VLDGDEL------------T---------TD-------- 190 (444)
T ss_pred HHHHHHcCCeE--------------EEeee-----------eecCcCC------------C---------cC--------
Confidence 76666665310 00000 0001111 0 01
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccc---cc
Q 005009 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA---DL 677 (719)
Q Consensus 601 ~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~---e~ 677 (719)
.+.|++.|.+ ..+..+++|+..|- .+..|...+ +++|.++|++||+.+|+|+++. ++- ..+.. ..
T Consensus 191 ~e~Le~aIt~----~~~kai~~Vv~Tp~-t~~~g~~dd----L~eIa~la~k~gI~lIvDaAyg-~~~--~~~~~~~~~g 258 (444)
T TIGR03531 191 VEDIERAIEE----IGPDNILCVLSTTS-CFAPRSPDD----IEEIAKICANYDIPHIVNNAYG-LQS--NKYMELINKA 258 (444)
T ss_pred HHHHHHHHHh----ccCCCEEEEEEcCC-cCCCcchhC----HHHHHHHHHHcCCEEEEECcCc-CcC--hhhhhhhhcc
Confidence 3567778763 22367888888874 444444444 9999999999999999999995 311 11110 11
Q ss_pred cCC-Ccceeee--hhccCCCccchheeEe-CHHHHhhhc
Q 005009 678 LGC-VPDIACY--GKLLTGGVIPLAATLA-TNAVFDSFV 712 (719)
Q Consensus 678 ~gv-~PDIvtl--gK~LggG~~Plsavl~-~~~i~~~~~ 712 (719)
+.+ ..|++++ .|.+... ..-|++++ .+++++.+.
T Consensus 259 ~~~Grad~vv~s~hK~l~~p-g~Gg~I~~~d~el~~~i~ 296 (444)
T TIGR03531 259 IKVGRVDAVVSSTDKNFMVP-VGGAIIYSFDENFIQEIS 296 (444)
T ss_pred ccccCCCeEEEeCccCCCCC-CCEEEEEECCHHHHHHHH
Confidence 112 3587764 5776531 01244556 566666553
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.02 Score=63.81 Aligned_cols=79 Identities=19% Similarity=0.238 Sum_probs=52.2
Q ss_pred EEEEE-ccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcc--ee---eehhcc-CC
Q 005009 621 GALII-EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPD--IA---CYGKLL-TG 693 (719)
Q Consensus 621 AAvIv-EPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PD--Iv---tlgK~L-gg 693 (719)
.++++ -| +.-.|.. .+.+-+++|.++|+++|+++|+||+...|-..|..+. ....+.|+ ++ +|||.. ..
T Consensus 170 ~~v~~~~p--~NPtG~~-~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~-~~~~~~~~~~vi~~~SfSK~~~~~ 245 (401)
T TIGR01264 170 AALIVNNP--SNPCGSV-FSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFE-PLASLSSTVPILSCGGLAKRWLVP 245 (401)
T ss_pred eEEEEcCC--CCCCCCC-CCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccc-cHHHcCCCCcEEEEccCcccCCCc
Confidence 34444 45 4445654 4788899999999999999999999988754443211 11122333 33 789984 34
Q ss_pred CccchheeEeC
Q 005009 694 GVIPLAATLAT 704 (719)
Q Consensus 694 G~~Plsavl~~ 704 (719)
| +=+|.+++.
T Consensus 246 G-lRiG~iv~~ 255 (401)
T TIGR01264 246 G-WRLGWIIIH 255 (401)
T ss_pred c-ceEEEEEec
Confidence 6 577778876
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0038 Score=65.53 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=31.2
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
|++|.|.| -.||||||+|..|+.+|. ++|+||...=
T Consensus 1 m~~iav~~-KGGvGKTT~~~nLA~~La-----~~G~kVlliD 36 (270)
T cd02040 1 MRQIAIYG-KGGIGKSTTTQNLSAALA-----EMGKKVMIVG 36 (270)
T ss_pred CcEEEEEe-CCcCCHHHHHHHHHHHHH-----hCCCeEEEEE
Confidence 56788886 899999999999999994 7899998765
|
Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia. |
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0052 Score=66.83 Aligned_cols=86 Identities=19% Similarity=0.234 Sum_probs=62.1
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee---eehhccC-CCcc
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVI 696 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv---tlgK~Lg-gG~~ 696 (719)
..+++-|- .=.|... +.+-+++|.++|+++|+++|.||+...+........ +.-.+.++ +|||.+| .| +
T Consensus 127 ~v~l~nP~--NPTG~~~-s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~s~~~---~~~~~~vi~~~SfSK~~gl~G-l 199 (330)
T PRK05664 127 VLVVVNPN--NPTGRRF-DPARLLAWHARLAARGGWLVVDEAFMDNTPQHSLAA---CAHRPGLIVLRSFGKFFGLAG-A 199 (330)
T ss_pred EEEEeCCc--CCCCCcc-CHHHHHHHHHHHHhcCCEEEEECCcccCCCcccccc---cccCCCEEEEeeccccccCCC-c
Confidence 46788884 4446654 677799999999999999999999976632122222 11123433 7999998 78 6
Q ss_pred chheeEeCHHHHhhhcC
Q 005009 697 PLAATLATNAVFDSFVG 713 (719)
Q Consensus 697 Plsavl~~~~i~~~~~~ 713 (719)
=+|.+++.+++.+.+..
T Consensus 200 RiG~~v~~~~l~~~~~~ 216 (330)
T PRK05664 200 RLGFVLAEPALLRALAE 216 (330)
T ss_pred ceEEEEeCHHHHHHHHH
Confidence 88999999999887753
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0061 Score=66.45 Aligned_cols=82 Identities=15% Similarity=0.298 Sum_probs=53.4
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhc-CCcEEEeccccCccccCccccccccCCCc-cee--eehhccC-CCc
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNR-KIPVIFDEVFTGFWRLGVETTADLLGCVP-DIA--CYGKLLT-GGV 695 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~-gilLI~DEVqTGfGRtG~~~a~e~~gv~P-DIv--tlgK~Lg-gG~ 695 (719)
..++.-| +.-.|.+.+ .++++++|+++ ++++|+||++..|+. ... .......+ .++ +++|.+| .|
T Consensus 147 ~v~~~~P--~NPtG~~~~----~~~~~~l~~~~~~~~livDe~y~~~~~--~~~-~~~~~~~~~~i~~~S~SK~~~~~G- 216 (353)
T PRK05387 147 GIIFPNP--NAPTGIALP----LAEIERILAANPDSVVVIDEAYVDFGG--ESA-IPLIDRYPNLLVVQTFSKSRSLAG- 216 (353)
T ss_pred EEEEeCC--CCCCCCCCC----HHHHHHHHHhCCCcEEEEeCcccccCC--cch-HHHHhhCCCEEEEEehhHhhcchh-
Confidence 3467777 455677765 45555556554 999999999976742 111 01111122 344 6899998 67
Q ss_pred cchheeEeCHHHHhhhc
Q 005009 696 IPLAATLATNAVFDSFV 712 (719)
Q Consensus 696 ~Plsavl~~~~i~~~~~ 712 (719)
+-+|.+++++++.+.+.
T Consensus 217 lR~G~~~~~~~~~~~l~ 233 (353)
T PRK05387 217 LRVGFAIGHPELIEALN 233 (353)
T ss_pred hhceeeecCHHHHHHHH
Confidence 57888999999888764
|
|
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.003 Score=66.79 Aligned_cols=99 Identities=14% Similarity=0.083 Sum_probs=63.5
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC
Q 005009 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (719)
Q Consensus 601 ~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv 680 (719)
++.||+.+..-....+......|.+|-- +..-|-.+.|-+|+.++.+||++||+.|-+|-.-- |=+.-..||
T Consensus 136 ledIe~~ir~~~GD~H~p~T~LIclENT-~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi-------~NAavasgV 207 (384)
T KOG1368|consen 136 LEDIEAAIRVPKGDCHMPPTKLICLENT-HNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARI-------FNAAVASGV 207 (384)
T ss_pred HHHHHHhhcCCCCCccCCCceEEEeecc-ccccCceEeeHHHHHHHHHHHhccCCeeecchhhh-------hhHHHHcCC
Confidence 4677777763110112223467888976 55445456689999999999999999999885331 222223333
Q ss_pred -------Ccce--eeehhccCCCccch-heeEeCHHHHhh
Q 005009 681 -------VPDI--ACYGKLLTGGVIPL-AATLATNAVFDS 710 (719)
Q Consensus 681 -------~PDI--vtlgK~LggG~~Pl-savl~~~~i~~~ 710 (719)
.-|- +||+||||. |+ |.+++++++.+.
T Consensus 208 ~vk~i~~~fDSVsiCLSKglgA---PVGSViVG~k~FI~k 244 (384)
T KOG1368|consen 208 PVKKICSAFDSVSICLSKGLGA---PVGSVIVGSKDFIDK 244 (384)
T ss_pred CHHHHHHhhhhhhhhhhccCCC---CcccEEEccHHHHHH
Confidence 3454 599999985 33 567778777653
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0041 Score=67.68 Aligned_cols=89 Identities=13% Similarity=0.130 Sum_probs=62.8
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee---eehhccC-CCcc
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVI 696 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv---tlgK~Lg-gG~~ 696 (719)
+.+|.-| +.=.|... +.+-+++|.++|++||+++|.||+..-|.-.+..-......-.+.++ +|+|.+| .| +
T Consensus 125 ~v~l~nP--~NPTG~~~-s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~G-l 200 (332)
T PRK06425 125 LIFIVSP--DNPLGNLI-SRDSLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLNRSYGNVIIGRSLTKILGIPS-L 200 (332)
T ss_pred EEEEeCC--CCCcCCcc-CHHHHHHHHHHHHHcCCEEEEecchhccccccchhHHHHhccCCCEEEEeecHHhcCCch-h
Confidence 4456678 45556654 78889999999999999999999998773222111111111123444 7999999 88 6
Q ss_pred chheeEeCHHHHhhhcC
Q 005009 697 PLAATLATNAVFDSFVG 713 (719)
Q Consensus 697 Plsavl~~~~i~~~~~~ 713 (719)
-+|.+++.+++.+.+..
T Consensus 201 RiGy~v~~~~li~~l~~ 217 (332)
T PRK06425 201 RIGYIATDDYNMKISRK 217 (332)
T ss_pred hheeeecCHHHHHHHHH
Confidence 89999999999887754
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0031 Score=70.45 Aligned_cols=171 Identities=18% Similarity=0.150 Sum_probs=103.8
Q ss_pred CCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCccc
Q 005009 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (719)
Q Consensus 439 ~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG 518 (719)
...++....|+++|+++-+. +.++.++||--|+-+++...+ +.| ..||.....|+|
T Consensus 51 R~gnPt~~~le~~la~Le~g---~~a~~~~SGmaAi~~~l~~ll-----~~G----------------d~iv~~~~~Y~~ 106 (386)
T PF01053_consen 51 RYGNPTVRALEQRLAALEGG---EDALLFSSGMAAISAALLALL-----KPG----------------DHIVASDDLYGG 106 (386)
T ss_dssp TTC-HHHHHHHHHHHHHHT----SEEEEESSHHHHHHHHHHHHS------TT----------------BEEEEESSSSHH
T ss_pred ccccccHHHHHHHHHHhhcc---cceeeccchHHHHHHHHHhhc-----ccC----------------CceEecCCccCc
Confidence 45688889999999998763 678999999998888877552 112 369999999998
Q ss_pred CccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHH
Q 005009 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (719)
Q Consensus 519 ~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~ 598 (719)
.... +.-. ...++. . +.|-|.. +
T Consensus 107 t~~~-~~~~-------------l~~~gv-------------~-----------------v~~~d~~-------d------ 129 (386)
T PF01053_consen 107 TYRL-LEEL-------------LPRFGV-------------E-----------------VTFVDPT-------D------ 129 (386)
T ss_dssp HHHH-HHHC-------------HHHTTS-------------E-----------------EEEESTT-------S------
T ss_pred chhh-hhhh-------------hcccCc-------------E-----------------EEEeCch-------h------
Confidence 3211 1100 000000 0 0112210 0
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcC-CcEEEeccccCccccCccccccc
Q 005009 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK-IPVIFDEVFTGFWRLGVETTADL 677 (719)
Q Consensus 599 ~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~g-ilLI~DEVqTGfGRtG~~~a~e~ 677 (719)
.+.+++.++ .++.+|++|+. ..--.-+.. ++++.++|+++| +++|+|..... + +.++-
T Consensus 130 --~~~l~~~l~--------~~t~~v~~Esp-sNP~l~v~D----l~~i~~~a~~~g~~~~vVDnT~at----p--~~~~p 188 (386)
T PF01053_consen 130 --LEALEAALR--------PNTKLVFLESP-SNPTLEVPD----LEAIAKLAKEHGDILVVVDNTFAT----P--YNQNP 188 (386)
T ss_dssp --HHHHHHHHC--------TTEEEEEEESS-BTTTTB-------HHHHHHHHHHTTT-EEEEECTTTH----T--TTC-G
T ss_pred --HHHHHhhcc--------ccceEEEEEcC-CCccccccc----HHHHHHHHHHhCCceEEeeccccc----e--eeecc
Confidence 356777775 38899999996 444444444 899999999999 99999999842 1 23333
Q ss_pred cCCCcceee--ehhccCC-CccchheeEeCH--HHHhhh
Q 005009 678 LGCVPDIAC--YGKLLTG-GVIPLAATLATN--AVFDSF 711 (719)
Q Consensus 678 ~gv~PDIvt--lgK~Lgg-G~~Plsavl~~~--~i~~~~ 711 (719)
+..-.||++ +.|-++| |=.=.|+++++. ++++.+
T Consensus 189 L~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l 227 (386)
T PF01053_consen 189 LELGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRL 227 (386)
T ss_dssp GGGT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHH
T ss_pred CcCCceEEEeeccccccCCcceeeEEEEECchhhhhhhh
Confidence 333479885 6899975 323345566553 665543
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.01 Score=73.71 Aligned_cols=228 Identities=14% Similarity=0.061 Sum_probs=131.9
Q ss_pred EEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCC--CCeEE
Q 005009 388 SVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGW--ASRAY 465 (719)
Q Consensus 388 ~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~--~~rv~ 465 (719)
++++.+|. .+|++..|-. .++ . +|.|.+|+.+.+.+..+. ....+....+++.+.+..+-.. -+.++
T Consensus 690 ~~~~~~g~----~vI~LsinE~--d~p-p-Pp~V~eAi~eal~~~~~s---~g~pdlr~aLa~~la~~~Gv~~d~~e~II 758 (1082)
T PLN02672 690 SVSGSQES----SLIHMDVDES--FLP-V-PSAVKASIFESFVRQNIS---ESETDPRPSILQFIKSNYGFPTDSCTEFV 758 (1082)
T ss_pred CCcccCCC----CEEEEeCCCC--CCC-C-CHHHHHHHHHHHhhcCCC---CCChHHHHHHHHHHHHHhCcCCCCCCEEE
Confidence 46666777 8888877532 344 4 799999999877654331 1234557788888888654321 13678
Q ss_pred EeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCC
Q 005009 466 FSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRG 545 (719)
Q Consensus 466 f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~ 545 (719)
++++..++...++... .. .| ..|+...-+|.+-...+ ...|.
T Consensus 759 vt~Gs~elL~lll~aL----l~-pG----------------D~VLVp~PtY~~Y~~~a-~~~Ga---------------- 800 (1082)
T PLN02672 759 YGDTSLALFNKLVLCC----VQ-EG----------------GTLCFPAGSNGTYVSAA-KFLKA---------------- 800 (1082)
T ss_pred EeCCHHHHHHHHHHHH----cC-CC----------------CEEEEeCCChHHHHHHH-HHcCC----------------
Confidence 7777666666665544 11 11 36777777776633221 11111
Q ss_pred cccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE
Q 005009 546 LFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII 625 (719)
Q Consensus 546 ~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIv 625 (719)
..+++|-. .++-| .-| .+.+++.+.+ ..+.+.+|.
T Consensus 801 --------------~vv~Vpl~---------------~e~gf--~lD--------~d~Le~al~~------~~~~~I~L~ 835 (1082)
T PLN02672 801 --------------NFRRIPTK---------------SSDGF--KLT--------AKTLASTLET------VKKPWVYIS 835 (1082)
T ss_pred --------------EEEEEecc---------------cccCC--CCC--------HHHHHHHhcc------CCCCEEEEE
Confidence 11111100 00000 001 2456666642 123357777
Q ss_pred ccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc---ccc----cc-CCCc--cee---eehhccC
Q 005009 626 EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET---TAD----LL-GCVP--DIA---CYGKLLT 692 (719)
Q Consensus 626 EPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~---a~e----~~-gv~P--DIv---tlgK~Lg 692 (719)
-|- +.=.|.+ .+.+-+++|.++|++||+++|.||+..++--.|..+ .+. .+ ...+ .++ +|+|..+
T Consensus 836 nPn-hNPTG~v-~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~ 913 (1082)
T PLN02672 836 GPT-INPTGLL-YSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELL 913 (1082)
T ss_pred CcC-CCCcCcc-CCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhc
Confidence 884 3445654 488999999999999999999999998764444321 110 11 1112 232 6898887
Q ss_pred -CCccchheeEeCH-HHHhhhc
Q 005009 693 -GGVIPLAATLATN-AVFDSFV 712 (719)
Q Consensus 693 -gG~~Plsavl~~~-~i~~~~~ 712 (719)
.| +-+|.+++.+ ++.+.+.
T Consensus 914 lpG-LRIGylIap~~eLi~~l~ 934 (1082)
T PLN02672 914 SGG-HEFGFLALNDSVLIDAFH 934 (1082)
T ss_pred cHH-HHheeEEeCCHHHHHHHH
Confidence 47 7888899864 4777664
|
|
| >KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0044 Score=65.19 Aligned_cols=89 Identities=20% Similarity=0.200 Sum_probs=64.6
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCC--CEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccC--------
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRL--PGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDH-------- 289 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~--pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~-------- 289 (719)
.-|++||.+ -|.++ .-.+.+.+.+.. =+|+|...+.=++..+.-.+...+..+++|+|+|-|-.
T Consensus 156 ~lDyLviDt-----PPGts-Dehls~~~~~~~~~gAviVTTPQ~vAl~Dv~K~i~fc~K~~I~ilGvVENMs~f~Cp~C~ 229 (300)
T KOG3022|consen 156 ELDYLVIDT-----PPGTS-DEHLSLVQFLRESDGAVIVTTPQEVALQDVRKEIDFCRKAGIPILGVVENMSGFVCPKCG 229 (300)
T ss_pred CcCEEEEeC-----CCCCC-hhhhheeecccccCceEEEeCchhhhhHHHHhhhhhhhhcCCceEEEEeccccccCCCCC
Confidence 489999998 33322 223333333332 26899998888999999999999999999999999974
Q ss_pred ------CCCCHHHHHHhhcCCCcEEe-cCCCCCC
Q 005009 290 ------GLVNEVPLMSYLRNRVPVLV-LPPLPQD 316 (719)
Q Consensus 290 ------~~~~~~~l~~~~~~~~pvlg-lP~~~~~ 316 (719)
+....+.+.+.+ ++|+|| ||-.+.+
T Consensus 230 ~~~~iF~~gGg~~l~~~~--glp~Lg~iPld~~i 261 (300)
T KOG3022|consen 230 HSTNIFGSGGGERLAEEL--GLPLLGSLPLDPLI 261 (300)
T ss_pred CcceeccCccHHHHHHHc--CCCeEeecCCCHHH
Confidence 123346666666 999999 9987753
|
|
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.042 Score=62.06 Aligned_cols=115 Identities=15% Similarity=0.119 Sum_probs=61.5
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcC----CCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCC-C--
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFR----LPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGL-V-- 292 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~----~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~-~-- 292 (719)
.+|+|||.++|.. +. +...+.++.+..+ ..++||.+...|-- +....+.+.+ .+.+-|+|+++... .
T Consensus 182 ~~DvViIDTaGr~--~~-d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~--a~~~a~~F~~-~~~~~g~IlTKlD~~arg 255 (429)
T TIGR01425 182 NFDIIIVDTSGRH--KQ-EDSLFEEMLQVAEAIQPDNIIFVMDGSIGQA--AEAQAKAFKD-SVDVGSVIITKLDGHAKG 255 (429)
T ss_pred CCCEEEEECCCCC--cc-hHHHHHHHHHHhhhcCCcEEEEEeccccChh--HHHHHHHHHh-ccCCcEEEEECccCCCCc
Confidence 4999999999942 22 2234444444322 23899999766521 1222244432 35789999999832 1
Q ss_pred -CHHHHHHhhcCCCcEEecCCCCC------CCcchhhhhhhhchhhhhhHHHHHHHHH
Q 005009 293 -NEVPLMSYLRNRVPVLVLPPLPQ------DSSNDLMEWFDESHNVFDSLKNIMLLAY 343 (719)
Q Consensus 293 -~~~~l~~~~~~~~pvlglP~~~~------~~~~~~~~~l~~~~~~v~~Ll~~l~~~~ 343 (719)
..-.+...+ ++|+..|..-+. ++...+...+ .....+.+|++.+....
T Consensus 256 G~aLs~~~~t--~~PI~fig~Ge~v~Dle~f~p~~~~~ri-lgmgDi~~L~ek~~~~~ 310 (429)
T TIGR01425 256 GGALSAVAAT--KSPIIFIGTGEHIDDFEIFKTQPFISKL-LGMGDIEGLIDKVQDLK 310 (429)
T ss_pred cHHhhhHHHH--CCCeEEEcCCCChhhcCcCChHHHHHHH-hcCCCcHHHHHHHHHhh
Confidence 233344455 899876544322 2222222222 12244666666655543
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0047 Score=69.98 Aligned_cols=57 Identities=21% Similarity=0.257 Sum_probs=41.5
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEc-cccccCCccccCCHHHHHHHHHHHHhcCCcEEEecccc
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIE-PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT 664 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvE-PViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqT 664 (719)
+.|++.|.+ .+..+++.+.+| ++ ...|| .+.|...+++++++|++||+.||.|=.+.
T Consensus 164 d~Le~~I~~----~~~~~~~lV~a~itv-n~~GG-qpvs~~~m~~I~elA~~~Gl~Vi~DaAra 221 (460)
T PRK13237 164 DKLQALIDE----VGAENIAYICLAVTV-NLAGG-QPVSMANMRAVRELCDKHGIKVFFDATRC 221 (460)
T ss_pred HHHHHHhcc----ccCCccCceEEEEec-ccCCC-eeCCHHhHHHHHHHHHHcCCEEEEECcch
Confidence 567777764 234555555555 43 44455 45577899999999999999999999885
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.019 Score=64.22 Aligned_cols=80 Identities=14% Similarity=0.148 Sum_probs=52.3
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc-cccccccCCCccee---eehhccC-CCc
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPDIA---CYGKLLT-GGV 695 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~-~~a~e~~gv~PDIv---tlgK~Lg-gG~ 695 (719)
+.++.-| +.-.|.. .+.+-+++|.++|+++|+++|.||++..|-..+. +.....+.-.+.++ +|+|..+ .|
T Consensus 172 ~v~i~~p--~NPtG~~-~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG- 247 (403)
T TIGR01265 172 AIVVINP--SNPCGSV-FSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGISKRWVVPG- 247 (403)
T ss_pred EEEEecC--CCCCCCC-CCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhccCCcEEEEeecccccCCCc-
Confidence 4455556 3445654 4677789999999999999999999987754443 22222221112344 6899954 46
Q ss_pred cchheeEeC
Q 005009 696 IPLAATLAT 704 (719)
Q Consensus 696 ~Plsavl~~ 704 (719)
+=+|.+++.
T Consensus 248 lRiG~~v~~ 256 (403)
T TIGR01265 248 WRLGWIIIH 256 (403)
T ss_pred ceEEEEEEe
Confidence 677878773
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0055 Score=74.87 Aligned_cols=180 Identities=12% Similarity=0.047 Sum_probs=111.3
Q ss_pred hHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccc
Q 005009 443 EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLG 522 (719)
Q Consensus 443 ~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~g 522 (719)
+...+|.+.|++++|-+ .-.++.++|+.|.-+++..+ |.|+..+|. . +..++....+-||+--.
T Consensus 530 q~i~elq~~l~eltGmd--~~Sl~p~aGA~gE~agL~ai-R~y~~~rge------------~-~R~~vlip~saHgtnPa 593 (939)
T TIGR00461 530 ELIAQLEKWLCSITGFD--AISLQPNSGAQGEYAGLRVI-RSYHESRGE------------N-HRNICLIPVSAHGTNPA 593 (939)
T ss_pred HHHHHHHHHHHHHHCCC--CcccCCchHHHHHHHHHHHH-HHHHHhcCC------------C-CCCEEEEEccccCcCHH
Confidence 45678999999999842 24467788888887788888 777765543 2 34677788889997655
Q ss_pred cccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHH
Q 005009 523 AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSS 602 (719)
Q Consensus 523 alslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~ 602 (719)
+....|.. ...++... -... | .+
T Consensus 594 sa~~~G~~----------------------------Vv~V~~d~-------------~G~i--------D--------le 616 (939)
T TIGR00461 594 SAAMAGMQ----------------------------VVPVNCDQ-------------DGNI--------D--------LV 616 (939)
T ss_pred HHHHCCCE----------------------------EEEeccCC-------------CCCc--------C--------HH
Confidence 43333211 01111100 0000 1 35
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccC-ccccCccccccccCCC
Q 005009 603 YISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG-FWRLGVETTADLLGCV 681 (719)
Q Consensus 603 ~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTG-fGRtG~~~a~e~~gv~ 681 (719)
.|++.+++ .++++++|++--. .. -|.+.++ ++++.++|+++|..+++|=+|.. .+ +. . .--...
T Consensus 617 ~L~~~i~~-----~~~~taaV~iT~p-st-~G~~e~~---I~eI~~iah~~G~~v~VDgAq~~al~--~l--~-~Pg~~G 681 (939)
T TIGR00461 617 DLKNKAEQ-----HGDELAAVMVTYP-ST-HGVFEPT---IQHACDIVHSFGGQVYLDGANMNAQV--GL--T-SPGDLG 681 (939)
T ss_pred HHHHHHhh-----cCCceEEEEEEeC-Cc-Cceeccc---HHHHHHHHHHcCCEEEEEecChhhCC--CC--C-CccccC
Confidence 67777763 3467888877532 22 3555433 89999999999999999999963 21 11 1 111234
Q ss_pred cceeee--hhccC-----CCccchheeEeCHHHHhhh
Q 005009 682 PDIACY--GKLLT-----GGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 682 PDIvtl--gK~Lg-----gG~~Plsavl~~~~i~~~~ 711 (719)
.|++++ .|.++ || -=+|.+.+++++...+
T Consensus 682 aDi~~~s~HKtf~~P~G~GG-Pg~G~i~vr~~L~~~l 717 (939)
T TIGR00461 682 ADVCHLNLHKTFCIPHGGGG-PGMGPIGVKSHLIPFL 717 (939)
T ss_pred CCEEEecCCccCCCCCCCCC-CCeEEEEEhhhchhhc
Confidence 799987 59887 55 3356777777655444
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.021 Score=63.25 Aligned_cols=88 Identities=11% Similarity=0.114 Sum_probs=59.5
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccccccc----CC--Cccee---eehhcc
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL----GC--VPDIA---CYGKLL 691 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~----gv--~PDIv---tlgK~L 691 (719)
+.+|.-| +.=.|.+. +.+.+++|.++|++||+++|.||+...|...+.....-.. +. .+.++ +|+|.+
T Consensus 158 ~v~i~nP--~NPTG~~~-s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~ 234 (374)
T PRK05839 158 LVILNSP--NNPTGRTL-SLEELIEWVKLALKHDFILINDECYSEIYENTPPPSLLEASILVGNESFKNVLVINSISKRS 234 (374)
T ss_pred EEEEeCC--CCCcCccc-CHHHHHHHHHHHHHcCCEEEeccchhhcccCCCCCCHhhhhcccCccccCcEEEEecccccc
Confidence 4455667 45456655 6888999999999999999999999776322222111110 00 12333 699986
Q ss_pred C-CCccchheeEeCHHHHhhhc
Q 005009 692 T-GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 692 g-gG~~Plsavl~~~~i~~~~~ 712 (719)
+ .| +-+|.+++++++.+.+.
T Consensus 235 ~~~G-lRiG~ii~~~~~~~~~~ 255 (374)
T PRK05839 235 SAPG-LRSGFIAGDASILKKYK 255 (374)
T ss_pred CCcc-ceeEEEecCHHHHHHHH
Confidence 5 57 78999999999888763
|
|
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.012 Score=65.47 Aligned_cols=98 Identities=10% Similarity=0.037 Sum_probs=61.9
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCC-----cEEEeccccCccccCcccc-c
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI-----PVIFDEVFTGFWRLGVETT-A 675 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gi-----lLI~DEVqTGfGRtG~~~a-~ 675 (719)
+.|++.|.+ ...+..+|++--. ..+-|.+-| +++|.++|++||+ .|.+|=+|.|+ .. .+.. .
T Consensus 149 ~~L~~~i~~-----~~~~~~lvv~tag-tt~tG~idp----i~eI~~i~~~~g~~~~~~~lHvDaA~gg~-~~-p~~~~~ 216 (374)
T PLN03032 149 DDLERALAK-----NRDKPAILNVNIG-TTVKGAVDD----LDRILRILKELGYTEDRFYIHCDGALFGL-MM-PFVSRA 216 (374)
T ss_pred HHHHHHHHH-----cCCCCEEEEEEec-CcCCccCCC----HHHHHHHHHHhCCCCCCeeEEEEccchhh-hh-hccCCC
Confidence 567777763 1224445555443 566788888 9999999999975 79999999763 11 1100 0
Q ss_pred c--ccCCCcceeeeh--hccCCCccchheeEeCHHHHhhhc
Q 005009 676 D--LLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 676 e--~~gv~PDIvtlg--K~LggG~~Plsavl~~~~i~~~~~ 712 (719)
. .+....|.++++ |-+|.- .+.|+++++++..+.+.
T Consensus 217 ~~~~~~~~vDSis~s~HK~~g~P-~g~G~ll~r~~~~~~~~ 256 (374)
T PLN03032 217 PEVTFRKPIGSVSVSGHKFLGCP-MPCGVALTRKKHVKALS 256 (374)
T ss_pred cccCCCcCCcEEEECcccccCCC-cCeEEEEEEchhhHhhc
Confidence 0 111247877653 544334 57889999988876654
|
|
| >COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.019 Score=60.89 Aligned_cols=102 Identities=16% Similarity=0.196 Sum_probs=70.6
Q ss_pred CCHHHHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHH
Q 005009 192 VGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAY 271 (719)
Q Consensus 192 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~ 271 (719)
++.++....+.++... +|++|+....|+.-+ ........ --+|+|....--++..++.++
T Consensus 97 ~~~~~~~~~~~~l~~~-------------~D~iliD~~aGl~~~------~~~~~~~s-d~~viVt~pe~~si~~A~~~i 156 (262)
T COG0455 97 LDPEDLEDVIKELEEL-------------YDYILIDTGAGLSRD------TLSFILSS-DELVIVTTPEPTSITDAYKTI 156 (262)
T ss_pred cCHHHHHHHHHHHHhc-------------CCEEEEeCCCCccHH------HHHHHHhc-CcEEEEeCCCcchHHHHHHHH
Confidence 5566666666666654 799999996664433 22222222 457788888888999999999
Q ss_pred HHHHhCCCcEEE--EEEccCC--CC---CHHHHHHhhcCCCcEEe-cCCCC
Q 005009 272 ESLKLRGYDVVA--VVFEDHG--LV---NEVPLMSYLRNRVPVLV-LPPLP 314 (719)
Q Consensus 272 ~~l~~~~~~v~g--vi~N~~~--~~---~~~~l~~~~~~~~pvlg-lP~~~ 314 (719)
+.+...+....+ +|+|++. .+ ....+.+... .++.+. +|+.+
T Consensus 157 ~~~~~~~~~~~~~~vV~N~v~~~~e~~~~~~~~~~~~~-~~~~~~~i~~~~ 206 (262)
T COG0455 157 KILSKLGLDLLGRRVVLNRVRSTKEGVDVAALLIQVVK-QVPVLQVIPFDP 206 (262)
T ss_pred HHHHHcCCccccceEEEEecccccchhHHHHHHHHHHH-hCCceeEeccCh
Confidence 999999999888 9999993 22 2333333333 555666 89888
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0074 Score=74.47 Aligned_cols=183 Identities=11% Similarity=0.035 Sum_probs=110.5
Q ss_pred ChHHHHHHHHHHhccCCCCCCeEEEeC-ChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCc
Q 005009 442 YEPALECAELLLQGVGKGWASRAYFSD-NGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (719)
Q Consensus 442 ~~~~~~Lae~L~~~~~~~~~~rv~f~~-SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t 520 (719)
.+...++.+.|+++++ .+.|.|.. +|+.+-++-+.++ +.|.+.+|. . +.++|....+-||.-
T Consensus 567 ~~~~~~~r~~la~i~g---~~~v~f~pnaga~ge~a~~~vi-~~~~~~~Gd------------~-~r~~vli~~~aH~sn 629 (993)
T PLN02414 567 QEMFEDLGDLLCEITG---FDSFSLQPNAGAAGEYAGLMVI-RAYHLSRGD------------H-HRNVCIIPVSAHGTN 629 (993)
T ss_pred HHHHHHHHHHHHHHhC---CCeEEEcCCCcHHHHHHHHHHH-HHHHhccCC------------C-CCCEEEeCCCcCccC
Confidence 3446688899999988 47787775 4555444444444 666544332 1 235677778889976
Q ss_pred cccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHH
Q 005009 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (719)
Q Consensus 521 ~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~ 600 (719)
..++...|.. ...++.... ... |
T Consensus 630 ~a~a~~~G~~----------------------------vv~v~~d~~-------------G~v--------D-------- 652 (993)
T PLN02414 630 PASAAMCGMK----------------------------IVVVGTDAK-------------GNI--------N-------- 652 (993)
T ss_pred HHHHHHCCCE----------------------------EEEeccCCC-------------CCc--------C--------
Confidence 6555443211 011111100 000 1
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC
Q 005009 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (719)
Q Consensus 601 ~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv 680 (719)
.+.|++.+.. +.+++++|++-=. ...||...+ ++++.++|+++|+++++|=+|.- +-.|. ..-...
T Consensus 653 le~L~~~i~~-----~~~~ta~V~vt~p-Sn~gg~e~~----I~eI~~iah~~Galv~vDgAq~~-a~~~l---~~p~~~ 718 (993)
T PLN02414 653 IEELRKAAEA-----HKDNLAALMVTYP-STHGVYEEG----IDEICDIIHDNGGQVYMDGANMN-AQVGL---TSPGFI 718 (993)
T ss_pred HHHHHHHHhc-----cCCCeEEEEEECC-Cccccccch----HHHHHHHHHHcCCEEEEEecCHH-hccCc---CCcccc
Confidence 3567777762 3457888877654 577888877 99999999999999999999951 11111 111123
Q ss_pred Ccceeee--hhccC----CCccchheeEeCHHHHhhhc
Q 005009 681 VPDIACY--GKLLT----GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 681 ~PDIvtl--gK~Lg----gG~~Plsavl~~~~i~~~~~ 712 (719)
-.|++++ .|.++ +|=--+|.+.+++++...+-
T Consensus 719 GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~p~lP 756 (993)
T PLN02414 719 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLP 756 (993)
T ss_pred CCCEEEecCCccCCcCcccCCCCeeeEEEchhhcccCC
Confidence 4698876 68665 23123777888887776553
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.023 Score=63.36 Aligned_cols=37 Identities=22% Similarity=0.296 Sum_probs=31.6
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..+.+.|.|. +|||||++.+.|+..|. ++|++|+.+-
T Consensus 240 ~~~vI~LVGp-tGvGKTTTiaKLA~~L~-----~~GkkVglI~ 276 (436)
T PRK11889 240 EVQTIALIGP-TGVGKTTTLAKMAWQFH-----GKKKTVGFIT 276 (436)
T ss_pred CCcEEEEECC-CCCcHHHHHHHHHHHHH-----HcCCcEEEEe
Confidence 3467999999 99999999999999984 7788988655
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.014 Score=66.88 Aligned_cols=83 Identities=13% Similarity=0.083 Sum_probs=55.5
Q ss_pred CcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc-cccccCCCccee---eehhcc-C
Q 005009 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPDIA---CYGKLL-T 692 (719)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~-a~e~~gv~PDIv---tlgK~L-g 692 (719)
...+.+|.-|- .-.|.+. +.+-+++|.++|++||+++|.||+...|--.|..+ ....+.-...++ +|+|.. -
T Consensus 204 ~~~~v~i~nP~--NPTG~v~-s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f~~ 280 (462)
T PLN02187 204 NTVAMVVINPN--NPCGNVY-SHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKGWVV 280 (462)
T ss_pred CcEEEEEeCCC--CCCCCcc-CHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCcEEEEecchhhcCC
Confidence 35677888883 4446544 78899999999999999999999998752223222 111121111233 689995 4
Q ss_pred CCccchheeEeC
Q 005009 693 GGVIPLAATLAT 704 (719)
Q Consensus 693 gG~~Plsavl~~ 704 (719)
.| +-+|.+++.
T Consensus 281 pG-lRiG~~v~~ 291 (462)
T PLN02187 281 PG-WKIGWIALN 291 (462)
T ss_pred cc-ceeEEEEec
Confidence 57 688888873
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.018 Score=65.12 Aligned_cols=91 Identities=20% Similarity=0.212 Sum_probs=60.9
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc-cccccCC
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGC 680 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~-a~e~~gv 680 (719)
+.+++.+.. .+..-+.++.-|- .=-|. ..+.+.+++|.++|++||+++|.||+...|-..|..+ .. ..+
T Consensus 160 ~~l~~~~~~-----~~~~~~i~l~~P~--NPTG~-~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl--~~~ 229 (433)
T PRK06855 160 DDLENKVKY-----NPSIAGILLINPD--NPTGA-VYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPL--SEV 229 (433)
T ss_pred HHHHHHHhc-----CCCceEEEEECCC--CCCCc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCH--HHH
Confidence 556666642 2233456778884 44455 4478999999999999999999999998773334211 11 112
Q ss_pred Ccc---ee--eehhccC-CCccchheeEe
Q 005009 681 VPD---IA--CYGKLLT-GGVIPLAATLA 703 (719)
Q Consensus 681 ~PD---Iv--tlgK~Lg-gG~~Plsavl~ 703 (719)
.+| |+ .|+|.++ .| +=+|.+++
T Consensus 230 ~~~~~~I~~~S~SK~~~~pG-lRiG~ii~ 257 (433)
T PRK06855 230 IGDVPGIALKGISKELPWPG-SRCGWIEV 257 (433)
T ss_pred cCcCCeEEEecCccccCCCc-ceEEEEEE
Confidence 232 33 6999997 78 68888886
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0021 Score=69.83 Aligned_cols=194 Identities=15% Similarity=0.180 Sum_probs=123.3
Q ss_pred CCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccc
Q 005009 412 GPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEV 491 (719)
Q Consensus 412 ~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~ 491 (719)
++.+. +++=.+++ -+++..+++. ....++-...|++|++.+=|+ --.+.+.||-.|.-.|+-... +.|
T Consensus 34 sy~F~-d~~haa~l-F~l~~~G~iY-sRi~NPT~~vlE~RiAaLEGG---~aa~a~aSG~AA~~~ai~~la-----~aG- 101 (426)
T COG2873 34 SYVFD-DTDHAAAL-FGLKEPGNIY-TRIMNPTTDVLEERIAALEGG---VAALAVASGQAAITYAILNLA-----GAG- 101 (426)
T ss_pred eeecC-CHHHHHHH-hCCCcCCcee-eeccCchHHHHHHHHHHhhcc---hhhhhhccchHHHHHHHHHhc-----cCC-
Confidence 45555 44433322 2344444432 234577778899999987553 245678899888888877652 112
Q ss_pred cccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhc
Q 005009 492 LVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSK 571 (719)
Q Consensus 492 ~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~ 571 (719)
..||+-..-|=| |..-.+.+- +. +|.
T Consensus 102 ---------------D~iVss~~LYGG-T~~lf~~tl----~~---------~Gi------------------------- 127 (426)
T COG2873 102 ---------------DNIVSSSKLYGG-TYNLFSHTL----KR---------LGI------------------------- 127 (426)
T ss_pred ---------------CeeEeeccccCc-hHHHHHHHH----Hh---------cCc-------------------------
Confidence 368888777766 333333220 00 010
Q ss_pred ccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHH
Q 005009 572 IVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQ 651 (719)
Q Consensus 572 ~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~ 651 (719)
+++|-|.+ | .+.++++|+ ++..||++|.| ..-++.++. ++++.++|+
T Consensus 128 -----~v~fvd~~-------d--------~~~~~~aI~--------~nTkavf~Eti-gNP~~~v~D----ie~ia~iAh 174 (426)
T COG2873 128 -----EVRFVDPD-------D--------PENFEAAID--------ENTKAVFAETI-GNPGLDVLD----IEAIAEIAH 174 (426)
T ss_pred -----EEEEeCCC-------C--------HHHHHHHhC--------cccceEEEEec-cCCCccccC----HHHHHHHHH
Confidence 01122211 0 255677776 47789999997 566677766 899999999
Q ss_pred hcCCcEEEeccccCccccCccccccccCCCcceee--ehhccCC-CccchheeEeCHHHHhhh
Q 005009 652 NRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTG-GVIPLAATLATNAVFDSF 711 (719)
Q Consensus 652 k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvt--lgK~Lgg-G~~Plsavl~~~~i~~~~ 711 (719)
+||++||+|-.++. . |-++-+..-.|||+ +.|=+|| | .-||.+++..--+|+-
T Consensus 175 ~~gvpliVDNT~at----p--yl~rP~~hGADIVvHS~TK~igGhG-t~iGG~iVD~G~FDw~ 230 (426)
T COG2873 175 RHGVPLIVDNTFAT----P--YLCRPIEHGADIVVHSATKYIGGHG-TAIGGVIVDGGKFDWT 230 (426)
T ss_pred HcCCcEEEecCCCc----c--eecchhhcCCCEEEEeecccccCCc-cccceEEEeCCccccc
Confidence 99999999998852 2 55555556789995 7899988 7 6888888876656543
|
|
| >TIGR01005 eps_transp_fam exopolysaccharide transport protein family | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0054 Score=74.37 Aligned_cols=64 Identities=9% Similarity=-0.124 Sum_probs=46.1
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccC
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDH 289 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~ 289 (719)
.||+|||.+...+. .....-++...+ =||+|+....-....+..+++.++..+.++.|||+|++
T Consensus 655 ~yD~IiID~pp~~~-----~~d~~~l~~~~D-~vl~v~~~~~~~~~~~~~~~~~l~~~~~~~~GvvlN~~ 718 (754)
T TIGR01005 655 YSDCVVVDVGTADP-----VRDMRAAARLAI-IMLLVTAYDRVVVECGRADAQGISRLNGEVTGVFLNML 718 (754)
T ss_pred hCCEEEEcCCCcch-----hHHHHHhhhhCC-eEEEEEEeCceeHHHHHHHHHHHHhcCCceEEEEecCC
Confidence 39999999954322 122233343333 35688777777788888899999988899999999987
|
The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export. |
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.011 Score=64.66 Aligned_cols=209 Identities=14% Similarity=0.077 Sum_probs=113.1
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlK 479 (719)
.++|+..+. +.++. .|++++++.+.+....... +......+|-+.|++..+...-+.++++++++++...+++
T Consensus 27 ~~i~l~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~---Y~~~~~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~~~~ 99 (356)
T PRK04870 27 GMVKLDAME--NPYRL--PAELRAELGERLAEVALNR---YPDPRAAALKAALRAAMGVPAGADVLLGNGSDELIQLLAL 99 (356)
T ss_pred CceeCcCCC--CCCCC--CHHHHHHHHHHhhcccccc---CCCCCHHHHHHHHHHHhCcCCCCcEEEcCCHHHHHHHHHH
Confidence 577765542 34555 4899999998876422211 1112235666777776653211368888877788887776
Q ss_pred HHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcc
Q 005009 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (719)
Q Consensus 480 lA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (719)
+.. .. ..+|+...-+|.+... .....| .
T Consensus 100 ~~~-----~~----------------gd~vlv~~P~y~~~~~-~~~~~g------------------------------~ 127 (356)
T PRK04870 100 ACA-----KP----------------GATVLAPEPGFVMYRM-SAKLAG------------------------------L 127 (356)
T ss_pred Hhc-----CC----------------CCEEEECCCCHHHHHH-HHHHcC------------------------------C
Confidence 551 11 2357777766665321 111111 1
Q ss_pred eeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEE-EccccccCCccccC
Q 005009 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALI-IEPVVHAAGGMHMV 638 (719)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI-vEPViqg~gG~~~p 638 (719)
..+++|- ++ + + .-| .+.+++.+.. .++.+|+ .-| +.-.|...+
T Consensus 128 ~~~~i~~--------------~~-~--~--~~d--------~~~l~~~~~~-------~~~~~v~l~~p--~NPtG~~~~ 171 (356)
T PRK04870 128 EFVGVPL--------------TA-D--F--TLD--------LPAMLAAIAE-------HRPALVFLAYP--NNPTGNLFD 171 (356)
T ss_pred EEEEecC--------------CC-C--C--CCC--------HHHHHHHhhc-------CCCCEEEEcCC--CCCCCCCCC
Confidence 1111220 00 0 0 001 2456666642 2333444 446 455677664
Q ss_pred CHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee---eehhccC-CCccchheeEeCHHHHhhhc
Q 005009 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 639 p~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv---tlgK~Lg-gG~~Plsavl~~~~i~~~~~ 712 (719)
.+-++++.++| ++++|+||+...|... .+. . ...-.+.++ +++| .+ .| +.+|.+++++++++.+.
T Consensus 172 -~~~~~~i~~~~---~~~ii~De~y~~~~~~-~~~-~-~~~~~~~vi~~~S~SK-~~~~G-lRiG~~i~~~~~i~~~~ 240 (356)
T PRK04870 172 -DADVERIIEAA---PGLVVVDEAYQPFAGD-SWL-P-RLARFPNLLVMRTVSK-LGLAG-LRLGYLAGHPAWIAELD 240 (356)
T ss_pred -HHHHHHHHHHC---CCEEEEECCchhhcCc-chH-H-HHhhCCCEEEEecchh-hhhHH-HhhhhhhCCHHHHHHHH
Confidence 55555555555 8899999999877421 211 1 011112333 6899 54 37 68899999999888775
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.016 Score=63.61 Aligned_cols=36 Identities=17% Similarity=0.049 Sum_probs=29.7
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
...++++|. +|+|||++++.|+..|. ++|++|+..-
T Consensus 140 ~~vi~~~G~-~GvGKTTtiakLA~~l~-----~~g~~V~li~ 175 (336)
T PRK14974 140 PVVIVFVGV-NGTGKTTTIAKLAYYLK-----KNGFSVVIAA 175 (336)
T ss_pred CeEEEEEcC-CCCCHHHHHHHHHHHHH-----HcCCeEEEec
Confidence 457889995 99999999999999994 6788887743
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0099 Score=67.28 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=30.4
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.+.+++.|. ||||||++++.|+..+.+ .+.|.+|+++.
T Consensus 221 ~~~i~~vGp-tGvGKTTt~~kLA~~~~~---~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGP-TGVGKTTTLAKLAARYAL---LYGKKKVALIT 258 (424)
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHHHHH---hcCCCeEEEEE
Confidence 457899999 899999999999988720 14578998886
|
|
| >cd02032 Bchl_like This family of proteins contains bchL and chlL | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.008 Score=63.39 Aligned_cols=90 Identities=12% Similarity=0.145 Sum_probs=52.5
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHH----hCCCcEEEEEEccCCCCCHH
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLK----LRGYDVVAVVFEDHGLVNEV 295 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~----~~~~~v~gvi~N~~~~~~~~ 295 (719)
+||+|||-+.|++..+.. ......-+ -||+|.....-++..+...++.++ ..++++.|+|+|++.. ..
T Consensus 115 ~yD~vIIDt~g~~~~~~~-----~~al~~aD-~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~--~~ 186 (267)
T cd02032 115 EYDVILFDVLGDVVCGGF-----AAPLNYAD-YALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK--TD 186 (267)
T ss_pred cCCEEEEeCCCCcccccc-----hhhhhhcC-EEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH--HH
Confidence 499999999766543321 11122222 355666666545554444444433 3467889999999842 12
Q ss_pred HHHHhhcC-CCcEEe-cCCCCCCC
Q 005009 296 PLMSYLRN-RVPVLV-LPPLPQDS 317 (719)
Q Consensus 296 ~l~~~~~~-~~pvlg-lP~~~~~~ 317 (719)
.+.+..+. +.|+++ ||..+...
T Consensus 187 ~i~~~~~~~~~~vl~~Ip~~~~v~ 210 (267)
T cd02032 187 LIDKFVEAVGMPVLAVLPLIEDIR 210 (267)
T ss_pred HHHHHHHhCCCCEEEEecCCcccc
Confidence 23333332 889999 98876654
|
Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen. |
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.023 Score=65.44 Aligned_cols=61 Identities=21% Similarity=0.250 Sum_probs=37.9
Q ss_pred HHHHHHHHhcccCCCCCCCCCCCCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 13 HRRILLRLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.++.++.++...-.. .+.........+.|+|. +|+|||+++..|+..+. ....|++|.++-
T Consensus 327 ~~~~l~~~L~~~l~v-~~~~~l~~G~vIaLVGP-tGvGKTTtaakLAa~la---~~~~gkkVaLId 387 (559)
T PRK12727 327 GRGLMLGLLSKRLPV-APVDPLERGGVIALVGP-TGAGKTTTIAKLAQRFA---AQHAPRDVALVT 387 (559)
T ss_pred HHHHHHHHHHHhcCc-CccccccCCCEEEEECC-CCCCHHHHHHHHHHHHH---HhcCCCceEEEe
Confidence 344555555443321 22233334567889998 69999999999998874 102256777664
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.04 Score=60.06 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=29.7
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
...+.+.| -+|+||||+++.|+..+. .+|.+|...-
T Consensus 114 ~~vi~lvG-pnGsGKTTt~~kLA~~l~-----~~g~~V~Li~ 149 (318)
T PRK10416 114 PFVILVVG-VNGVGKTTTIGKLAHKYK-----AQGKKVLLAA 149 (318)
T ss_pred CeEEEEEC-CCCCcHHHHHHHHHHHHH-----hcCCeEEEEe
Confidence 45788999 489999999999999994 6688887654
|
|
| >PRK13232 nifH nitrogenase reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0083 Score=63.58 Aligned_cols=90 Identities=11% Similarity=0.080 Sum_probs=51.4
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHH---hCCCcEEEEEEccCCCCC-H-
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLK---LRGYDVVAVVFEDHGLVN-E- 294 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~---~~~~~v~gvi~N~~~~~~-~- 294 (719)
++|+|||-..|++... .....++..----+|+|+....-++..+-..++.++ ..+.++.|+|.|+..... .
T Consensus 116 ~yD~vlID~~~~~~~~----~~~~~~al~aad~vlip~~p~~~sl~~~~~~~k~l~~~~~~~l~~~GiV~n~~~~~~~~~ 191 (273)
T PRK13232 116 DLDYVFYDVLGDVVCG----GFAMPIREGKAKEIYIVASGELMAIYAANNICKGLAKFAKGGARLGGIICNSRNVDGERE 191 (273)
T ss_pred cCCEEEEecCCCeeEC----CEeccccccccceEEEecCchHHHHHHHHHHHHHHHHHhCCCCceeEEEEeCCCCCccHH
Confidence 4999999996543211 011111100112577777776656655444444444 456889999999873222 2
Q ss_pred --HHHHHhhcCCCcEEe-cCCCCC
Q 005009 295 --VPLMSYLRNRVPVLV-LPPLPQ 315 (719)
Q Consensus 295 --~~l~~~~~~~~pvlg-lP~~~~ 315 (719)
+.+++.+ +.++++ ||....
T Consensus 192 ~~e~l~~~~--~~~vl~~Ip~~~~ 213 (273)
T PRK13232 192 LLEAFAKKL--GSQLIHFVPRDNI 213 (273)
T ss_pred HHHHHHHHh--CCCeEEECCCCHH
Confidence 3334444 778888 887654
|
|
| >TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0076 Score=63.55 Aligned_cols=88 Identities=11% Similarity=0.106 Sum_probs=51.3
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHh----CCCcEEEEEEccCCCCCHH
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKL----RGYDVVAVVFEDHGLVNEV 295 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~----~~~~v~gvi~N~~~~~~~~ 295 (719)
.||+|||-+.|++..+.... ....-+ -+|+|.....-++..+...++.++. .++++.|+|+|++... .
T Consensus 115 ~yD~ViID~~~~~~~~~~~~-----~l~aAD-~vlip~~~~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~~--~ 186 (268)
T TIGR01281 115 DYDVILFDVLGDVVCGGFAT-----PLQYAD-YALVVAANDFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDAT--D 186 (268)
T ss_pred cCCEEEEecCCccccCcccc-----chhhcC-EEEEEecCchhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCChH--H
Confidence 49999999977654432110 111112 2555666655566655555554442 4678899999998432 2
Q ss_pred HHHHhhcC-CCcEEe-cCCCCC
Q 005009 296 PLMSYLRN-RVPVLV-LPPLPQ 315 (719)
Q Consensus 296 ~l~~~~~~-~~pvlg-lP~~~~ 315 (719)
.+.+..+. +.|+++ ||....
T Consensus 187 ~~~~~~~~~~~~vl~~I~~~~~ 208 (268)
T TIGR01281 187 LIERFNERVGMPVLGVVPDLEV 208 (268)
T ss_pred HHHHHHHHcCCCEEEEcCCChH
Confidence 22322222 889998 877554
|
The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit. |
| >PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0015 Score=70.77 Aligned_cols=62 Identities=27% Similarity=0.252 Sum_probs=46.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccC-CCCC-------------HH---HHHHhhcCCCcEEecCCCCC
Q 005009 253 GILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDH-GLVN-------------EV---PLMSYLRNRVPVLVLPPLPQ 315 (719)
Q Consensus 253 vilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~-~~~~-------------~~---~l~~~~~~~~pvlglP~~~~ 315 (719)
+++|.....-++..+.-.++.|+..|+++.+||+|++ .... .. .+.+.+. +.||.-+|..+.
T Consensus 210 ~~lV~~pE~l~i~Et~r~~~~L~~~gi~v~~vVvNrvlp~~~~~c~~~~~r~~~Q~~~l~~i~~~f~-~~~v~~vp~~~~ 288 (305)
T PF02374_consen 210 FRLVTNPEPLAIAETERLLTELKLYGIPVDAVVVNRVLPEEEDDCPFCAARRKEQQKYLAEIEESFP-DLPVVKVPLLPE 288 (305)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEEEEE-TTCSTTSHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE--SS
T ss_pred EEEEecCCcchHHHHHHHHHHHHhcCCccCeEEEEccccccccchHHHHHHHHHHHHHHHHHHHHhc-CCCEEEecCCCC
Confidence 7999999999999999999999999999999999998 2222 11 2222222 799999998775
|
... |
| >PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0032 Score=70.68 Aligned_cols=37 Identities=16% Similarity=0.108 Sum_probs=33.9
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KP 79 (719)
|+.|-|+|- +|+||||++..|+..|. ++|++|+..|=
T Consensus 1 MkVi~IvG~-sgSGKTTLiekLI~~L~-----~rG~rVavIKH 37 (452)
T PRK14495 1 MRVYGIIGW-KDAGKTGLVERLVAAIA-----ARGFSVSTVKH 37 (452)
T ss_pred CcEEEEEec-CCCCHHHHHHHHHHHHH-----hCCCeEEEEec
Confidence 568999998 69999999999999994 89999999994
|
|
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.042 Score=53.86 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=27.5
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 40 ~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
+.++|. +|+|||+++..|+..+. ++|.+|.++-
T Consensus 3 ~~~~G~-~G~GKTt~~~~la~~~~-----~~g~~v~~i~ 35 (173)
T cd03115 3 ILLVGL-QGVGKTTTAAKLALYLK-----KKGKKVLLVA 35 (173)
T ss_pred EEEECC-CCCCHHHHHHHHHHHHH-----HCCCcEEEEE
Confidence 566766 89999999999999984 6688888766
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.026 Score=63.10 Aligned_cols=86 Identities=16% Similarity=0.086 Sum_probs=47.5
Q ss_pred cCcEEEEeCCCCCCCCCCCCc--hhHHHHhhcCC--CEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCC-CCCH
Q 005009 220 MEILCIVETAGGVASPGPSGS--LQCDLYRPFRL--PGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHG-LVNE 294 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~--~~~dla~~l~~--pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~-~~~~ 294 (719)
++|+|||-++|.. +.+... -...+....+. .++||.+...+. +.....++.. ..+.+-|+|+-+.. ....
T Consensus 254 ~~DlVLIDTaGr~--~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~-~~~~~~~~~~--~~~~~~~~I~TKlDet~~~ 328 (388)
T PRK12723 254 DFDLVLVDTIGKS--PKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT-SDVKEIFHQF--SPFSYKTVIFTKLDETTCV 328 (388)
T ss_pred CCCEEEEcCCCCC--ccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH-HHHHHHHHHh--cCCCCCEEEEEeccCCCcc
Confidence 3999999999954 321110 11223333333 489999977663 2222222222 34678899999983 3333
Q ss_pred HHHHHhhcC-CCcEEec
Q 005009 295 VPLMSYLRN-RVPVLVL 310 (719)
Q Consensus 295 ~~l~~~~~~-~~pvlgl 310 (719)
-.+.+.... ++|+.-+
T Consensus 329 G~~l~~~~~~~~Pi~yi 345 (388)
T PRK12723 329 GNLISLIYEMRKEVSYV 345 (388)
T ss_pred hHHHHHHHHHCCCEEEE
Confidence 333332222 8898654
|
|
| >TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0051 Score=60.00 Aligned_cols=39 Identities=18% Similarity=0.231 Sum_probs=33.6
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCC
Q 005009 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGY 84 (719)
Q Consensus 40 ~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g~ 84 (719)
+.|+|. +|+|||+++..|++.|. ++|++|+++|+..++.
T Consensus 2 i~i~G~-~gsGKTtl~~~l~~~l~-----~~G~~V~viK~~~~~~ 40 (155)
T TIGR00176 2 LQIVGP-KNSGKTTLIERLVKALK-----ARGYRVATIKHDHHDF 40 (155)
T ss_pred EEEECC-CCCCHHHHHHHHHHHHH-----hcCCeEEEEecccccc
Confidence 678888 69999999999999994 7799999999865543
|
This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes. |
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.029 Score=62.53 Aligned_cols=71 Identities=15% Similarity=0.132 Sum_probs=48.3
Q ss_pred ccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCcccc-Cc-cccccc-cCCCccee---eehhccCC-CccchheeE
Q 005009 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRL-GV-ETTADL-LGCVPDIA---CYGKLLTG-GVIPLAATL 702 (719)
Q Consensus 630 qg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRt-G~-~~a~e~-~gv~PDIv---tlgK~Lgg-G~~Plsavl 702 (719)
+.=.|... +.+.+++|.++|++||+++|.||+...|.-. +. ...... .+..+.++ +|||.++- | +=+|.++
T Consensus 182 ~NPTG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~G-lRiG~~~ 259 (396)
T PRK09257 182 HNPTGADL-TPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFGLYG-ERVGALS 259 (396)
T ss_pred CCCCCCCC-CHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCcccc-ccceeEE
Confidence 45556654 8999999999999999999999999887422 11 111111 11123343 69999984 7 6777776
|
|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.042 Score=61.08 Aligned_cols=37 Identities=22% Similarity=0.353 Sum_probs=30.2
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..+.++|+|. +|||||++++.|+..+. ++|++|+.+-
T Consensus 205 ~~~ii~lvGp-tGvGKTTt~akLA~~l~-----~~g~~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQ-TGVGKTTTLVKLGWQLL-----KQNRTVGFIT 241 (407)
T ss_pred CCeEEEEECC-CCCCHHHHHHHHHHHHH-----HcCCeEEEEe
Confidence 3567889997 69999999999999884 6688887654
|
|
| >cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.014 Score=55.54 Aligned_cols=84 Identities=15% Similarity=0.122 Sum_probs=53.9
Q ss_pred CcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHhC-CCcEEEEEEccCCCC-CHHHHH
Q 005009 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLR-GYDVVAVVFEDHGLV-NEVPLM 298 (719)
Q Consensus 221 ~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~-~~~v~gvi~N~~~~~-~~~~l~ 298 (719)
+|++||.+.+++ +.....+++..+ -+|+|+....-++..+...++.+... +..-.++|+|++... ..+.+.
T Consensus 45 yd~VIiD~p~~~------~~~~~~~l~~aD-~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~~~~~~~~ 117 (139)
T cd02038 45 YDYIIIDTGAGI------SDNVLDFFLAAD-EVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESPKEGKKVF 117 (139)
T ss_pred CCEEEEECCCCC------CHHHHHHHHhCC-eEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCHHHHHHHH
Confidence 578999986542 223455666666 47788888777888877777777543 345678999998432 222233
Q ss_pred Hh--------hcCCCcEEe-cC
Q 005009 299 SY--------LRNRVPVLV-LP 311 (719)
Q Consensus 299 ~~--------~~~~~pvlg-lP 311 (719)
+. ...++|.+| ||
T Consensus 118 ~~~~~~~~r~~~~~l~~~~~~~ 139 (139)
T cd02038 118 KRLSNVSNRFLGLSLDYLGFIP 139 (139)
T ss_pred HHHHHHHHHHhCCChhhceecC
Confidence 32 212678888 76
|
It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity. |
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.033 Score=62.16 Aligned_cols=95 Identities=9% Similarity=0.026 Sum_probs=64.9
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcC---CcEEEeccccCccccCc-----cc
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK---IPVIFDEVFTGFWRLGV-----ET 673 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~g---ilLI~DEVqTGfGRtG~-----~~ 673 (719)
+.|++.+.+ ...+...|++--+ ..+-|.+.| +++|.++|++|| +.+.+|=+|.|+ ..-. .+
T Consensus 148 ~~L~~~i~~-----~~~~t~lvv~t~g-tt~tG~idp----i~~I~~i~~~~g~~~~~lHVDaA~gg~-~~p~~~~~~~~ 216 (380)
T PRK02769 148 DDLISKIKE-----NKNQPPIIFANIG-TTMTGAIDN----IKEIQEILKKIGIDDYYIHADAALSGM-ILPFVNNPPPF 216 (380)
T ss_pred HHHHHHHHh-----CCCCcEEEEEEeC-CCCCcccCC----HHHHHHHHHHhCCCceEEEEEecccce-eecccCccccC
Confidence 567777763 2234555655554 677889988 999999999998 699999999763 2210 12
Q ss_pred cccccCCCcceeeeh--hccCCCccchheeEeCHHHHhhh
Q 005009 674 TADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 674 a~e~~gv~PDIvtlg--K~LggG~~Plsavl~~~~i~~~~ 711 (719)
.+.. ..|.++++ |-+++- .+.|+++++++..+.+
T Consensus 217 d~~~---~vDsis~s~HK~~~~P-~g~G~l~~r~~~~~~~ 252 (380)
T PRK02769 217 SFAD---GIDSIAISGHKFIGSP-MPCGIVLAKKKYVERI 252 (380)
T ss_pred CccC---CCCEEEECCcccCCCC-CCcEEEEEehhhhhhc
Confidence 2211 57887664 644444 6889999999877665
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.04 Score=63.68 Aligned_cols=88 Identities=16% Similarity=0.226 Sum_probs=58.8
Q ss_pred cEEEE-EEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccc-----ccc---CCCcce----e
Q 005009 619 CIGAL-IIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA-----DLL---GCVPDI----A 685 (719)
Q Consensus 619 ~iAAv-IvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~-----e~~---gv~PDI----v 685 (719)
++.+| |.-| +.=-|.+. +.+-+++|.++|++||+++|.||++..+-..|.-+.. ..+ ++.||. -
T Consensus 199 ~~k~l~l~nP--~NPTG~~~-s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~ 275 (496)
T PLN02376 199 KVKGLILTNP--SNPLGTML-DKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVY 275 (496)
T ss_pred CeeEEEEcCC--CCCCCccC-CHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEE
Confidence 45444 4555 34456544 7889999999999999999999999876333432211 111 123452 2
Q ss_pred eehhccC-CCccchheeEe-CHHHHhh
Q 005009 686 CYGKLLT-GGVIPLAATLA-TNAVFDS 710 (719)
Q Consensus 686 tlgK~Lg-gG~~Plsavl~-~~~i~~~ 710 (719)
+|+|.+| .| +-+|.+++ .+.+.+.
T Consensus 276 S~SK~~glpG-lRvG~li~~~~~l~~~ 301 (496)
T PLN02376 276 SLSKDMGLPG-FRVGIVYSFNDSVVSC 301 (496)
T ss_pred eccccCCCCc-ceEEEEEECCHHHHHH
Confidence 7899997 78 78999998 4555554
|
|
| >PRK10818 cell division inhibitor MinD; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.052 Score=57.22 Aligned_cols=38 Identities=24% Similarity=0.280 Sum_probs=33.5
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
|++.|-|++.-.|||||++++.|..+|. ++|++|...=
T Consensus 1 m~kviav~s~KGGvGKTt~a~nlA~~la-----~~g~~vllvD 38 (270)
T PRK10818 1 MARIIVVTSGKGGVGKTTSSAAIATGLA-----QKGKKTVVID 38 (270)
T ss_pred CceEEEEEeCCCCCcHHHHHHHHHHHHH-----HCCCeEEEEE
Confidence 3578999999999999999999999994 7799987765
|
|
| >PHA02518 ParA-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.044 Score=55.11 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=31.2
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
+.|-|++.-.|||||+++..|..+|. ++|++|...-
T Consensus 1 ~ii~v~~~KGGvGKTT~a~~la~~la-----~~g~~vlliD 36 (211)
T PHA02518 1 KIIAVLNQKGGAGKTTVATNLASWLH-----ADGHKVLLVD 36 (211)
T ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHH-----hCCCeEEEEe
Confidence 35789999999999999999999994 7899887665
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.028 Score=64.14 Aligned_cols=91 Identities=15% Similarity=0.218 Sum_probs=58.4
Q ss_pred CCcEEEEEE-ccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccc--c---ccCC-C-cc-ee--
Q 005009 617 SGCIGALII-EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA--D---LLGC-V-PD-IA-- 685 (719)
Q Consensus 617 ~~~iAAvIv-EPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~--e---~~gv-~-PD-Iv-- 685 (719)
+.++.++++ -| +.-.|. ..+++.+++|.++|++|++.+|.||+...+--.+..|.. + ..+. . ++ ++
T Consensus 198 ~~~vk~lll~nP--~NPtG~-~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi 274 (447)
T PLN02607 198 NIRVRGVLITNP--SNPLGA-TVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIV 274 (447)
T ss_pred CCCeeEEEEeCC--CCCcCc-ccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEEE
Confidence 345655554 45 333455 447899999999999999999999999763111211211 1 1111 1 34 22
Q ss_pred -eehhccC-CCccchheeEe-CHHHHhhh
Q 005009 686 -CYGKLLT-GGVIPLAATLA-TNAVFDSF 711 (719)
Q Consensus 686 -tlgK~Lg-gG~~Plsavl~-~~~i~~~~ 711 (719)
.++|.+| .| +=+|++++ .+++.+.+
T Consensus 275 ~s~SK~fg~~G-lRvG~ivs~n~~l~~~~ 302 (447)
T PLN02607 275 YSLSKDLGLPG-FRVGTIYSYNDKVVTTA 302 (447)
T ss_pred EcchhcCCCCc-ceEEEEEEcCHHHHHHH
Confidence 6899998 78 78898888 66676544
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.024 Score=65.86 Aligned_cols=102 Identities=13% Similarity=-0.021 Sum_probs=63.2
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC-
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC- 680 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv- 680 (719)
+.|++.|++.. ..+.++.+|+.-.. ..+-|.+.| +++|.++|++||+.|.+|=+|.|....-.-+....-|+
T Consensus 250 ~~L~~~i~~~~--~~g~~~~~vvataG-tt~tGaiDp----l~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle 322 (522)
T TIGR03799 250 DALRDKCAELA--EQNIKPLAIVGVAG-TTETGNIDP----LDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIE 322 (522)
T ss_pred HHHHHHHHHHH--HCCCCcEEEEEEec-CcCCCCcCC----HHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCch
Confidence 44555554210 12334556665433 346788888 99999999999999999999976421111111112455
Q ss_pred Ccceeeeh--hccCCCccchheeEeCH-HHHhhh
Q 005009 681 VPDIACYG--KLLTGGVIPLAATLATN-AVFDSF 711 (719)
Q Consensus 681 ~PDIvtlg--K~LggG~~Plsavl~~~-~i~~~~ 711 (719)
..|.+|+. |.+.+- +..|++++++ +..+.+
T Consensus 323 ~aDSit~d~HK~l~~P-~g~G~llvr~~~~~~~~ 355 (522)
T TIGR03799 323 RADSVTIDAHKQLYVP-MGAGMVLFKDPALMSAI 355 (522)
T ss_pred hCCEEEEChhhcCCcC-cccEEEEEeCHHHHHHh
Confidence 68988764 766655 5778888874 454544
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.026 Score=61.54 Aligned_cols=82 Identities=20% Similarity=0.357 Sum_probs=55.9
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee---eehhccC-CCcc
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVI 696 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv---tlgK~Lg-gG~~ 696 (719)
+.++.-| +.-.|...+ .++|.++|+ +++++|+||+...|.. ..... .....+.++ +|+|.+| .| +
T Consensus 143 ~v~~~~P--~NPtG~~~~----~~~l~~i~~-~~~~ii~De~y~~~~~-~~~~~--~~~~~~~vi~l~S~SK~~~l~G-l 211 (337)
T PRK03967 143 AVFICSP--NNPTGNLQP----EEEILKVLE-TGKPVVLDEAYAEFSG-KSLIG--LIDEYPNLILLRTFSKAFGLAG-I 211 (337)
T ss_pred EEEEeCC--CCCCCCCCC----HHHHHHHHh-cCCEEEEECchhhhcc-cchHH--HHhhCCCEEEEecchHhhcchh-h
Confidence 3445667 455676665 467777884 7999999999987731 12111 111224444 6999999 88 7
Q ss_pred chheeEeCHHHHhhhcC
Q 005009 697 PLAATLATNAVFDSFVG 713 (719)
Q Consensus 697 Plsavl~~~~i~~~~~~ 713 (719)
=+|.+++++++.+.+..
T Consensus 212 RiG~iv~~~~~i~~~~~ 228 (337)
T PRK03967 212 RAGYAIANEEIIDALYR 228 (337)
T ss_pred hheeeecCHHHHHHHHh
Confidence 89999999999887754
|
|
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.13 Score=57.53 Aligned_cols=116 Identities=13% Similarity=0.095 Sum_probs=66.8
Q ss_pred cCcEEEEeCCCCCCCCCCCCchh---HHHHhhcC-CCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCC-C---
Q 005009 220 MEILCIVETAGGVASPGPSGSLQ---CDLYRPFR-LPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHG-L--- 291 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~---~dla~~l~-~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~-~--- 291 (719)
.+|++||.+||=+.. +..++ .++.+.++ ..+|||+|.-.|- .+....+++.+ .+.|-|||+.+.. .
T Consensus 182 ~~DvvIvDTAGRl~i---de~Lm~El~~Ik~~~~P~E~llVvDam~GQ--dA~~~A~aF~e-~l~itGvIlTKlDGdaRG 255 (451)
T COG0541 182 GYDVVIVDTAGRLHI---DEELMDELKEIKEVINPDETLLVVDAMIGQ--DAVNTAKAFNE-ALGITGVILTKLDGDARG 255 (451)
T ss_pred CCCEEEEeCCCcccc---cHHHHHHHHHHHhhcCCCeEEEEEecccch--HHHHHHHHHhh-hcCCceEEEEcccCCCcc
Confidence 489999999995443 22333 33334443 3489999976662 22222333432 3789999999982 1
Q ss_pred CCHHHHHHhhcCCCcE--Ee----cCCCCCCCcchhhhhhhhchhhhhhHHHHHHHHHH
Q 005009 292 VNEVPLMSYLRNRVPV--LV----LPPLPQDSSNDLMEWFDESHNVFDSLKNIMLLAYS 344 (719)
Q Consensus 292 ~~~~~l~~~~~~~~pv--lg----lP~~~~~~~~~~~~~l~~~~~~v~~Ll~~l~~~~~ 344 (719)
...--++..+ +.|+ +| +..++.++...++..+ +....+.+|++...+...
T Consensus 256 GaALS~~~~t--g~PIkFiGtGEki~dLE~F~P~R~asRI-LGMGDv~sLvEk~~~~~d 311 (451)
T COG0541 256 GAALSARAIT--GKPIKFIGTGEKIDDLEPFHPDRFASRI-LGMGDVLSLIEKAEEVVD 311 (451)
T ss_pred hHHHhhHHHH--CCCeEEEecCCCcccCCCcChHHHHHHh-cCcccHHHHHHHHHHhhh
Confidence 1234456666 7776 44 4445555544444433 222456667766655543
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.012 Score=67.80 Aligned_cols=96 Identities=10% Similarity=-0.068 Sum_probs=63.9
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC-
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC- 680 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv- 680 (719)
+.|++.|++.. +.+....+|+.--- ...-|.+-| +++|.++|++||+.|.+|=.+.|+-..-..+-+...|+
T Consensus 224 ~~L~~~i~~~~--~~g~~p~~vvataG-TT~~GaiDp----l~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~~~~l~gie 296 (490)
T PLN02880 224 ELLSEAISTDL--SSGLIPFFLCATVG-TTSSTAVDP----LLELGKIAKSNGMWFHVDAAYAGSACICPEYRHYIDGVE 296 (490)
T ss_pred HHHHHHHHHHH--HCCCccEEEEEecC-CCcCcccCc----HHHHHHHHHHcCCEEEEehhhHHHHHhCHHHHHHhcCch
Confidence 44555554310 12345566666654 556688888 99999999999999999988876533222222223465
Q ss_pred Ccceee--ehhccCCCccchheeEeCH
Q 005009 681 VPDIAC--YGKLLTGGVIPLAATLATN 705 (719)
Q Consensus 681 ~PDIvt--lgK~LggG~~Plsavl~~~ 705 (719)
.+|-++ .=|-+..- ++.|++++++
T Consensus 297 ~aDSit~d~HKwl~~P-~~~g~llvr~ 322 (490)
T PLN02880 297 EADSFNMNAHKWFLTN-FDCSLLWVKD 322 (490)
T ss_pred hcCEEEECchhhcCCC-ccEEEEEEeC
Confidence 689775 57888766 5888888875
|
|
| >CHL00072 chlL photochlorophyllide reductase subunit L | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.016 Score=62.22 Aligned_cols=88 Identities=14% Similarity=0.089 Sum_probs=50.3
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHh----CCCcEEEEEEccCC-CCCH
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKL----RGYDVVAVVFEDHG-LVNE 294 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~----~~~~v~gvi~N~~~-~~~~ 294 (719)
+||++||-+.|++..+.- +.....-+ -+|+|.....-++..+-..++.++. .++++.|+|+|++. ....
T Consensus 115 ~yD~IiIDt~~~l~~~a~-----~aal~~AD-~viIp~~p~~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~~~~~ 188 (290)
T CHL00072 115 EYDIILFDVLGDVVCGGF-----AAPLNYAD-YCIIITDNGFDALFAANRIAASVREKARTHPLRLAGLVGNRTSKRDLI 188 (290)
T ss_pred cCCEEEEecCCcceechh-----hhhhhcCC-EEEEEecCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCchhHH
Confidence 499999999665332210 00011111 2566666665555555555444432 35778999999983 2223
Q ss_pred HHHHHhhcCCCcEEe-cCCCCC
Q 005009 295 VPLMSYLRNRVPVLV-LPPLPQ 315 (719)
Q Consensus 295 ~~l~~~~~~~~pvlg-lP~~~~ 315 (719)
..+.+.+ +.|+++ ||+...
T Consensus 189 ~~~~~~~--~~~vl~~Ip~~~~ 208 (290)
T CHL00072 189 DKYVEAC--PMPVLEVLPLIED 208 (290)
T ss_pred HHHHHHc--CCceEEECCCChH
Confidence 3333334 889999 886554
|
|
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.06 Score=60.20 Aligned_cols=84 Identities=14% Similarity=0.226 Sum_probs=56.7
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc-ccc-cccCC---CcceeeehhccC-CC
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTA-DLLGC---VPDIACYGKLLT-GG 694 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~-~a~-e~~gv---~PDIvtlgK~Lg-gG 694 (719)
+.+|.-| +.-.|.+. +.+-+++|.++|++||+++|.||++..|-..+.. ... ..-+. .-.+-+|||.+| .|
T Consensus 176 ~i~l~nP--~NPTG~~~-s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~pG 252 (402)
T TIGR03542 176 IIYLCSP--NNPTGTVL-TKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTAGFTG 252 (402)
T ss_pred EEEEeCC--CCCCCccC-CHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCccccCCCC
Confidence 3444455 55556644 7888999999999999999999999876332221 111 11111 111237899997 68
Q ss_pred ccchheeEeCHHHH
Q 005009 695 VIPLAATLATNAVF 708 (719)
Q Consensus 695 ~~Plsavl~~~~i~ 708 (719)
+-+|.+++++++.
T Consensus 253 -lRiG~~i~~~~l~ 265 (402)
T TIGR03542 253 -VRLGWTVVPKELT 265 (402)
T ss_pred -cceEEEEecHHHh
Confidence 7999999998765
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.032 Score=60.98 Aligned_cols=54 Identities=17% Similarity=0.244 Sum_probs=44.7
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEecccc
Q 005009 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT 664 (719)
Q Consensus 601 ~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqT 664 (719)
++.+|.++++ .++|-||+-|- .-.|++ .+..-|++|.++|+|+|+++|+|||..
T Consensus 189 L~~veal~DE-------NT~AivviNP~-NPcGnV--ys~~HL~kiae~A~klgi~vIaDEVY~ 242 (447)
T KOG0259|consen 189 LDGVEALADE-------NTVAIVVINPN-NPCGNV--YSEDHLKKIAETAKKLGIMVIADEVYG 242 (447)
T ss_pred hHHHHHhhcc-------CeeEEEEeCCC-CCCccc--ccHHHHHHHHHHHHHhCCeEEehhhcc
Confidence 4677777764 47888999996 666654 478999999999999999999999985
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.023 Score=62.79 Aligned_cols=86 Identities=10% Similarity=0.110 Sum_probs=54.4
Q ss_pred EEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc-cccccc-CCCccee---eehhccC-CCc
Q 005009 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLL-GCVPDIA---CYGKLLT-GGV 695 (719)
Q Consensus 622 AvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~-~a~e~~-gv~PDIv---tlgK~Lg-gG~ 695 (719)
.+|..| +.-.|.+. +.+-+++|.++|++ ++++|+||+..-|--.+.. ...... ...+.++ +|+|.+| .|
T Consensus 163 v~l~~p--~NPtG~~~-~~~~~~~l~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~G- 237 (371)
T PRK05166 163 LMFSNP--SNPVGSWL-TADQLARVLDATPP-ETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGLAG- 237 (371)
T ss_pred EEEeCC--CCCCCCCC-CHHHHHHHHHhCCC-CcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEeechHhhhcch-
Confidence 345666 56667766 56667777777764 8999999999765311111 111111 1122344 6999999 88
Q ss_pred cchheeEe-CHHHHhhhc
Q 005009 696 IPLAATLA-TNAVFDSFV 712 (719)
Q Consensus 696 ~Plsavl~-~~~i~~~~~ 712 (719)
+.+|.+++ ++++.+.+.
T Consensus 238 lRiG~~i~~~~~l~~~~~ 255 (371)
T PRK05166 238 LRVGYGLVSDPELVGLLD 255 (371)
T ss_pred hheeeeecCCHHHHHHHH
Confidence 79998765 678877664
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.006 Score=68.57 Aligned_cols=165 Identities=18% Similarity=0.239 Sum_probs=93.7
Q ss_pred hHHHHHHHHHHhccCCCCCCeEEEeCChHHH-HHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCcc
Q 005009 443 EPALECAELLLQGVGKGWASRAYFSDNGSTA-IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTL 521 (719)
Q Consensus 443 ~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA-~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~ 521 (719)
.+..+..+.+++..| .++.||...||.. |.+++..+ .++.+.|.++.+.|-+..
T Consensus 66 G~I~eAe~~aA~~fG---Ad~t~flvnGsT~g~~a~i~a~----------------------~~~gd~VLv~RN~HkSv~ 120 (417)
T PF01276_consen 66 GIIKEAEELAARAFG---ADKTFFLVNGSTSGNQAMIMAL----------------------CRPGDKVLVDRNCHKSVY 120 (417)
T ss_dssp THHHHHHHHHHHHHT---ESEEEEESSHHHHHHHHHHHHH----------------------TTTTCEEEEETT--HHHH
T ss_pred cHHHHHHHHHHHhcC---CCeEEEEecCchHHHHHHHHHh----------------------cCCCCEEEEcCCcHHHHH
Confidence 345566666667777 4788888777654 55554444 223467889999999999
Q ss_pred ccccccCCC-CCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHH
Q 005009 522 GAMEAQAPS-PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (719)
Q Consensus 522 galslt~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~ 600 (719)
.++-++|.. .|-. |. ...-|. ..+++ . .++.
T Consensus 121 ~alil~ga~Pvyi~----------------p~-~~~~gi-~~~i~--------------~-------------~~~~--- 152 (417)
T PF01276_consen 121 NALILSGAIPVYIP----------------PE-DNEYGI-IGGIS--------------P-------------DEFN--- 152 (417)
T ss_dssp HHHHHHTEEEEEEE----------------EE-E-TTS--BEEB---------------G-------------GGGS---
T ss_pred HHHHHcCCeEEEec----------------CC-ccccCC-ccCCC--------------h-------------hhhh---
Confidence 999998732 1111 00 000000 00000 0 0011
Q ss_pred HHHHHHHHhcCCCCCCCCcEE---EEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccc
Q 005009 601 SSYISQNLLQNPGLKVSGCIG---ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677 (719)
Q Consensus 601 ~~~le~~l~~~~~~~~~~~iA---AvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~ 677 (719)
.+.|++.|++. ++.-+ +||+-|- -.|+... ++++.++|++++++|++||.+-+.-+...+ --..
T Consensus 153 ~~~i~~~l~~~-----p~~k~~~~vvlt~PT---Y~Gv~~d----i~~I~~~~h~~~~~llvDEAhGah~~F~~l-p~~a 219 (417)
T PF01276_consen 153 EEDIEEALKEH-----PDAKAPRLVVLTSPT---YYGVCYD----IKEIAEICHKHGIPLLVDEAHGAHFGFHPL-PRSA 219 (417)
T ss_dssp HHHHHHHHHHC-----TTCHCESEEEEESS----TTSEEE-----HHHHHHHHCCTECEEEEE-TT-TTGGCSGG-GTTC
T ss_pred HHHHHHHHHhC-----ccccCceEEEEeCCC---CCeEEEC----HHHHHHHhcccCCEEEEEccccccccCCCC-ccch
Confidence 25677788753 33323 7777774 3577777 999999999999999999999654333332 2223
Q ss_pred cCCCcc-------eeeeh--hccCC
Q 005009 678 LGCVPD-------IACYG--KLLTG 693 (719)
Q Consensus 678 ~gv~PD-------Ivtlg--K~Lgg 693 (719)
...-.| ++|-| |.|++
T Consensus 220 ~~~gad~~~~~~~~vvqS~HKtL~a 244 (417)
T PF01276_consen 220 LALGADRPNDPGIIVVQSTHKTLPA 244 (417)
T ss_dssp SSTTSS-CTSBEEEEEEEHHHHSSS
T ss_pred hhccCccccccceeeeechhhcccc
Confidence 455667 77643 66654
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.022 Score=63.46 Aligned_cols=207 Identities=16% Similarity=0.119 Sum_probs=120.0
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcc-cccCCCCC--ChHHHHHHHHH-HhccCCCCCCeEEEeCChHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG-HVMFPENV--YEPALECAELL-LQGVGKGWASRAYFSDNGSTAIE 475 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~-~~~~~~~~--~~~~~~Lae~L-~~~~~~~~~~rv~f~~SGsEA~E 475 (719)
-|||..+ .|=. +|+|.+|+...+..+- ......+. .+...+.|+.. +++.+.+. +.+.|+++++|||-
T Consensus 45 vyld~~a------t~p~-~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklInAd~-~dIiFts~ATEs~N 116 (428)
T KOG1549|consen 45 VYLDNQA------TGPM-DPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLINADP-SDIVFTSGATESNN 116 (428)
T ss_pred EEEecCc------CCCC-CHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhCCCC-CcEEEeCCchHHHH
Confidence 6888544 6778 9999999998776532 21111122 23334444443 44555443 34999999999999
Q ss_pred HHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccc
Q 005009 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (719)
Q Consensus 476 ~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (719)
.++|-.-+.+.. + .++.||.+... |.+...++...-. .+ +.
T Consensus 117 lvl~~v~~~~~~--~--------------~~k~iitl~~e-H~~v~~s~~~l~~--------------~g--~~------ 157 (428)
T KOG1549|consen 117 LVLKGVARFFGD--K--------------TKKHIITLQTE-HPCVLDSCRALQE--------------EG--LE------ 157 (428)
T ss_pred HHHHHhhccccc--c--------------ccceEEEeccc-CcchhHHHHHHHh--------------cC--eE------
Confidence 999977232221 1 12256655543 4433322221100 00 00
Q ss_pred cCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCcc
Q 005009 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (719)
Q Consensus 556 ~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~ 635 (719)
...+|+++.. . .-++.+++.|+ .++.+|++.-| ..+-|+
T Consensus 158 ---Vt~lpv~~~~-----------------~------------~d~~~~~~~i~--------~~T~lv~I~~V-nn~~gv 196 (428)
T KOG1549|consen 158 ---VTYLPVEDSG-----------------L------------VDISKLREAIR--------SKTRLVSIMHV-NNEIGV 196 (428)
T ss_pred ---EEEeccCccc-----------------c------------ccHHHHHHhcC--------CCceEEEEEec-ccCccc
Confidence 1122222111 0 00355666664 37788999997 899999
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeee--hhccCCCccchheeEeCH
Q 005009 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATN 705 (719)
Q Consensus 636 ~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtl--gK~LggG~~Plsavl~~~ 705 (719)
..| +++|.++|+++||.+++|=.|. . |+. -.+--.+.+|++++ =|.+|-= ++|+.-+++
T Consensus 197 ~~P----v~EI~~icr~~~v~v~~DaAQa-v---G~i-~vDV~eln~D~~s~s~HK~ygp~--~iGaLYvr~ 257 (428)
T KOG1549|consen 197 LQP----VKEIVKICREEGVQVHVDAAQA-V---GKI-PVDVQELNADFLSISAHKIYGPP--GIGALYVRR 257 (428)
T ss_pred ccc----HHHHHHHhCcCCcEEEeehhhh-c---CCc-cccHHHcCchheeeecccccCCC--cceEEEEcc
Confidence 999 9999999999999999999994 3 441 12222345777654 2544431 256666664
|
|
| >cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.016 Score=60.35 Aligned_cols=106 Identities=11% Similarity=0.050 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCCCCchh----HHHHhhcCCC-EEEEE-------c-CC
Q 005009 194 DSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQ----CDLYRPFRLP-GILVG-------D-GR 260 (719)
Q Consensus 194 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~~~~----~dla~~l~~p-vilV~-------~-~~ 260 (719)
.++|++++.+.... ...|+||||=-|-+.+. +.... .++...++.. +++|- . .+
T Consensus 117 t~eIk~~i~~~~~~-----------~~~dv~i~EiGGTvGDi--Es~pf~EAirq~~~~~g~~n~~~ihvt~vp~~~~~g 183 (255)
T cd03113 117 TDEIKERIRRVAEK-----------SGADVVIVEIGGTVGDI--ESLPFLEAIRQMKLELGRENVLFIHVTLVPYLKAAG 183 (255)
T ss_pred cHHHHHHHHHhhcc-----------CCCCEEEEEeCCccccc--cccHHHHHHHHHHHHhCcCcEEEEEEeeeeeecCCC
Confidence 56777777776642 35899999986644332 22223 3344444322 22221 1 12
Q ss_pred CChHHHHHHHHHHHHhCCCcEEEEEEccC---CCCCHHHHHHhhcCCCcEEe-cCCCC
Q 005009 261 LGGISGTISAYESLKLRGYDVVAVVFEDH---GLVNEVPLMSYLRNRVPVLV-LPPLP 314 (719)
Q Consensus 261 ~g~i~~~~~~~~~l~~~~~~v~gvi~N~~---~~~~~~~l~~~~~~~~pvlg-lP~~~ 314 (719)
.-----|-.+++.|+++|+++.++|+|.- ...+.+.|..+. ++|+.+ +|..+
T Consensus 184 E~KTKPtQhSVeaLRs~GIqPDgIVcRse~pL~e~~keKIAlFc--nVpve~VI~~~d 239 (255)
T cd03113 184 ELKTKPTQHSVKELRSIGIQPDILVCRSEKPLPPEIREKIALFC--DVPPEAVISAPD 239 (255)
T ss_pred ccccCchHHHHHHHHhCCCCCCEEEEeCCCCCchHHHHHHHHhc--CCCHHHeeecCC
Confidence 22344567889999999999999999985 234455555555 899888 55544
|
The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain. |
| >TIGR01287 nifH nitrogenase iron protein | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.025 Score=59.92 Aligned_cols=34 Identities=15% Similarity=0.382 Sum_probs=29.8
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.|.|.| -.|||||++|..|+.+|. ++|+||..+=
T Consensus 2 ~ia~~g-KGGVGKTT~a~nLA~~La-----~~G~~VlliD 35 (275)
T TIGR01287 2 QIAIYG-KGGIGKSTTTQNIAAALA-----EMGKKVMIVG 35 (275)
T ss_pred eeEEeC-CCcCcHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 578888 899999999999999995 7899998764
|
This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase. |
| >cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.013 Score=57.46 Aligned_cols=41 Identities=12% Similarity=0.087 Sum_probs=35.5
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccC
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTG 83 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g 83 (719)
|+.+.|+|. +|+|||+++..|++.|. ++|++|+.+|.-.++
T Consensus 1 m~vi~i~G~-~gsGKTTli~~L~~~l~-----~~g~~V~~iK~~~~~ 41 (159)
T cd03116 1 MKVIGFVGY-SGSGKTTLLEKLIPALS-----ARGLRVAVIKHDHHD 41 (159)
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHH-----HcCCcEEEEEecCCc
Confidence 568999999 59999999999999994 789999999965543
|
In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin. |
| >TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.049 Score=56.28 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=33.3
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
|+.|.|++.-.|+|||+++..|+.+|. ++|+||...-
T Consensus 1 m~iI~v~s~KGGvGKTt~a~nla~~la-----~~g~~VlliD 37 (246)
T TIGR03371 1 MKVIAIVGVKGGVGKTTLTANLASALK-----LLGEPVLAID 37 (246)
T ss_pred CcEEEEEeCCCCccHHHHHHHHHHHHH-----hCCCcEEEEe
Confidence 568999999999999999999999994 7899998775
|
Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined. |
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.039 Score=60.27 Aligned_cols=82 Identities=15% Similarity=0.171 Sum_probs=54.3
Q ss_pred EEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee---eehhccC-CCccc
Q 005009 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIP 697 (719)
Q Consensus 622 AvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv---tlgK~Lg-gG~~P 697 (719)
.++.-| +.-.|.+.+ .++|.++|++ ++++|+||++.-| ..|......... .++++ +|+|.+| .| +-
T Consensus 143 i~l~np--~NPTG~~~~----~~~l~~l~~~-~~~iIvDe~y~~~-~~~~~~~l~~~~-~~~~i~i~S~SK~~~l~G-lR 212 (349)
T PRK07908 143 VVIGNP--TNPTSVLHP----AEQLLALRRP-GRILVVDEAFADA-VPGEPESLAGDD-LPGVLVLRSLTKTWSLAG-LR 212 (349)
T ss_pred EEEcCC--CCCCCCCcC----HHHHHHHHhc-CCEEEEECcchhh-ccCCcccccccc-CCCEEEEeecccccCCcc-ce
Confidence 344466 566787776 3467888864 7889999999755 223322211122 23444 6799998 78 68
Q ss_pred hheeEeCHHHHhhhcC
Q 005009 698 LAATLATNAVFDSFVG 713 (719)
Q Consensus 698 lsavl~~~~i~~~~~~ 713 (719)
+|.+++++++.+.+..
T Consensus 213 iG~~~~~~~~~~~~~~ 228 (349)
T PRK07908 213 VGYALGAPDVLARLTR 228 (349)
T ss_pred eeeeecCHHHHHHHHh
Confidence 8999999998887653
|
|
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.026 Score=64.01 Aligned_cols=88 Identities=16% Similarity=0.112 Sum_probs=54.8
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEE--eccccCccccCccccccccC
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIF--DEVFTGFWRLGVETTADLLG 679 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~--DEVqTGfGRtG~~~a~e~~g 679 (719)
+.+++.+. +++++|++... ...|.+.+ +++|.++|+++|+++|+ |.+..|+ . .... .
T Consensus 195 ~~l~~~i~--------~~t~~v~l~~p--n~tG~v~~----l~~I~~~a~~~~~~~iv~~d~~~~g~--~---~~~~--~ 253 (447)
T PRK00451 195 EALEAAVD--------DDTAAVVVQYP--NFFGVIED----LEEIAEIAHAGGALFIVGVDPVSLGL--L---KPPG--E 253 (447)
T ss_pred HHHHHhcC--------CCeEEEEEECC--CCCCeeCC----HHHHHHHHHHCCCEEEEEcChHHhcc--C---CCcc--c
Confidence 45665553 35677777653 34577766 99999999999999998 6554322 1 1111 2
Q ss_pred CCcceeee-----hhccC-CCccchheeEeCHHHHhhh
Q 005009 680 CVPDIACY-----GKLLT-GGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 680 v~PDIvtl-----gK~Lg-gG~~Plsavl~~~~i~~~~ 711 (719)
...|+++. ||... +| --+|.+.+++++.+.+
T Consensus 254 ~~~D~~~~s~~k~~~~~~~~G-pg~G~l~~~~~~~~~~ 290 (447)
T PRK00451 254 YGADIVVGEGQPLGIPLSFGG-PYLGFFATRKKLVRQM 290 (447)
T ss_pred CCCCEEEECCCcCCCCCCCCC-CCchHHHhhHHHHhhC
Confidence 35688854 44422 23 1256677888887764
|
|
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.058 Score=60.36 Aligned_cols=100 Identities=14% Similarity=0.141 Sum_probs=61.5
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc---ccccccc
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV---ETTADLL 678 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~---~~a~e~~ 678 (719)
+.+++.+.+. .+.+..-++.-| +.=.|... +.+-+++|.++|++||+++|.||+...|-.-+. ......+
T Consensus 164 ~~l~~~~~~~----~~~~~~~~~~~p--~NPTG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~ 236 (404)
T PTZ00376 164 DGMLEDLRTA----PNGSVVLLHACA--HNPTGVDP-TEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLF 236 (404)
T ss_pred HHHHHHHHhC----CCCCEEEEeCCC--CCCCCCCC-CHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHH
Confidence 4455666421 122333333455 45556655 789999999999999999999999987733221 1011111
Q ss_pred -CCCccee---eehhccC-CCccchhee---EeCHHHHh
Q 005009 679 -GCVPDIA---CYGKLLT-GGVIPLAAT---LATNAVFD 709 (719)
Q Consensus 679 -gv~PDIv---tlgK~Lg-gG~~Plsav---l~~~~i~~ 709 (719)
...+.++ +|||.++ .| +=+|.+ ++++++.+
T Consensus 237 ~~~~~~vi~i~SfSK~~~~~G-lRvG~~~~~~~~~~~~~ 274 (404)
T PTZ00376 237 AERGVEFLVAQSFSKNMGLYG-ERIGALHIVCANKEEAA 274 (404)
T ss_pred HhcCCcEEEEEeCCCcccccc-cccceEEEEeCCHHHHH
Confidence 1112333 6899999 78 688887 56765433
|
|
| >PRK13230 nitrogenase reductase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.015 Score=61.71 Aligned_cols=36 Identities=14% Similarity=0.347 Sum_probs=31.7
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
|++|.|.| -.|||||++|..|..+|. ++|+||..+=
T Consensus 1 ~~~i~~~g-KGGVGKTT~a~nLA~~La-----~~G~rVLliD 36 (279)
T PRK13230 1 MRKFCFYG-KGGIGKSTTVCNIAAALA-----ESGKKVLVVG 36 (279)
T ss_pred CcEEEEEC-CCCCcHHHHHHHHHHHHH-----hCCCEEEEEe
Confidence 57888998 899999999999999994 8899987764
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.051 Score=62.42 Aligned_cols=90 Identities=16% Similarity=0.119 Sum_probs=58.1
Q ss_pred cE-EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccC-ccc-cccc--cCCCc------cee--
Q 005009 619 CI-GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG-VET-TADL--LGCVP------DIA-- 685 (719)
Q Consensus 619 ~i-AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG-~~~-a~e~--~gv~P------DIv-- 685 (719)
++ +.+++-| +.-.|.+. +.+-+++|.++|++||+++|.||+...+--.+ .-+ .... .++.+ .++
T Consensus 218 ~~k~l~l~~P--~NPTG~~~-s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~ 294 (481)
T PTZ00377 218 TPRALVVINP--GNPTGQVL-TRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSF 294 (481)
T ss_pred CeeEEEEECC--CCCCCcCC-CHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEE
Confidence 44 4566667 45556654 78899999999999999999999997652212 111 1110 12222 244
Q ss_pred -eehhcc-C-CCccchheeEe---CHHHHhhhc
Q 005009 686 -CYGKLL-T-GGVIPLAATLA---TNAVFDSFV 712 (719)
Q Consensus 686 -tlgK~L-g-gG~~Plsavl~---~~~i~~~~~ 712 (719)
.|||.+ + .| +=+|.+++ .+++.+.+.
T Consensus 295 ~S~SK~~~~~~G-lRiG~~~~~~~p~~li~~l~ 326 (481)
T PTZ00377 295 HSTSKGIIGECG-RRGGYFELTNIPPEVREQIY 326 (481)
T ss_pred ecCCcccccCCc-CceEEEEEeCCCHHHHHHHH
Confidence 589986 4 36 56777875 788877653
|
|
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.071 Score=60.08 Aligned_cols=214 Identities=11% Similarity=0.096 Sum_probs=128.8
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhccccc-CCCC-----CChHHHHHHHHHHhccCCCCCCeEEEeCChHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM-FPEN-----VYEPALECAELLLQGVGKGWASRAYFSDNGSTA 473 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~-~~~~-----~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA 473 (719)
.|+|..+ .+.. +..|.+|+.+....+.-.. .... .++...+.-++++++.+....+.+.|+.+-++|
T Consensus 24 vylD~aa------~~~~-p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~eIvft~~tT~a 96 (405)
T COG0520 24 VYLDNAA------TSQK-PQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTEA 96 (405)
T ss_pred EEecCcc------cccC-CHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChhHH
Confidence 5788443 4556 8899999998776543211 1111 122334444555666664323679999999999
Q ss_pred HHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcc
Q 005009 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (719)
Q Consensus 474 ~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~ 553 (719)
.-......-+. - .....||..+--+|....--..+... .|.-
T Consensus 97 ln~va~~l~~~--~----------------~~gdeIv~s~~EH~sn~~pw~~~~~~--------------~Ga~------ 138 (405)
T COG0520 97 LNLVARGLGRS--L----------------KPGDEIVVSDLEHHSNIVPWQELAKR--------------TGAK------ 138 (405)
T ss_pred HHHHHHHhhhh--h----------------cCCCEEEEccCcchhhHHHHHHHHHh--------------cCcE------
Confidence 88776654111 1 11257999999899865433333210 0000
Q ss_pred cccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 005009 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (719)
Q Consensus 554 ~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~g 633 (719)
...+|..+ +..+ + .+.++..+. ++.-.|.+--+ ...-
T Consensus 139 -----v~~i~~~~-----------------~g~~----~--------~~~~~~~i~--------~~Tklvais~v-Sn~t 175 (405)
T COG0520 139 -----VRVIPLDD-----------------DGLL----D--------LDALEKLIT--------PKTKLVALSHV-SNVT 175 (405)
T ss_pred -----EEEEecCC-----------------CCCc----C--------HHHHHHhcC--------CCceEEEEECc-cccc
Confidence 01111110 0000 0 244555443 45556667776 7778
Q ss_pred ccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeeh--hccCCCccchheeEeCHHHHhhh
Q 005009 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 634 G~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~LggG~~Plsavl~~~~i~~~~ 711 (719)
|.+.| +++|.++|+++|+++++|=+|. + |. .-.+-..+..|+++++ |.|.|- .-+|++.+++++.+.+
T Consensus 176 G~~~p----v~~I~~la~~~ga~v~VDaaq~-~---~h-~~idv~~l~~Df~afsgHKwl~gP-~GiGvLy~r~~~l~~l 245 (405)
T COG0520 176 GTVNP----VKEIAELAHEHGALVLVDAAQA-A---GH-LPIDVQELGCDFLAFSGHKWLLGP-TGIGVLYVRKELLEEL 245 (405)
T ss_pred cccch----HHHHHHHHHHcCCEEEEECccc-c---Cc-cCCCchhcCCCEEEEcccccccCC-CceEEEEEchHHHhhc
Confidence 99998 9999999999999999999995 2 21 1122223457988775 877763 3478999999999876
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.012 Score=64.57 Aligned_cols=86 Identities=22% Similarity=0.325 Sum_probs=58.2
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee---eehhccC-CCcc
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVI 696 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv---tlgK~Lg-gG~~ 696 (719)
..+|.-| +.-.|... +.+-++++.+.|++ ++++|+||++.-|. +...........|.++ +|+|.+| .| +
T Consensus 148 lv~l~nP--nNPTG~~~-~~~~l~~l~~~~~~-~~~vivDEay~~f~--~~~s~~~~~~~~~n~iv~rSfSK~~glaG-l 220 (351)
T PRK01688 148 VVYVCSP--NNPTGNLI-NPQDLRTLLELTRG-KAIVVADEAYIEFC--PQASLAGWLAEYPHLVILRTLSKAFALAG-L 220 (351)
T ss_pred EEEEeCC--CCCCCCCC-CHHHHHHHHHhCCC-CcEEEEECchhhcC--CCCChHHHHhhCCCEEEEecchHhhcCHH-H
Confidence 3566677 45567765 56677777777776 68999999997773 2111112222235554 7999998 67 6
Q ss_pred chheeEeCHHHHhhhcC
Q 005009 697 PLAATLATNAVFDSFVG 713 (719)
Q Consensus 697 Plsavl~~~~i~~~~~~ 713 (719)
-+|.+++++++.+.+..
T Consensus 221 RiGy~i~~~~~i~~l~~ 237 (351)
T PRK01688 221 RCGFTLANEEVINLLLK 237 (351)
T ss_pred HHhHHhCCHHHHHHHHh
Confidence 77889999999887753
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.031 Score=61.03 Aligned_cols=81 Identities=17% Similarity=0.276 Sum_probs=53.1
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee---eehhccC-CCcc
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVI 696 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv---tlgK~Lg-gG~~ 696 (719)
..++.-| +.=.|...+ . +++++++ ++++++|.||+..-|. +.-+. ....-.+.++ +|||.+| .| +
T Consensus 141 ~i~i~nP--~NPTG~~~s-~---~~l~~l~-~~~~~ii~DE~Y~~f~--~~~~~-~~~~~~~~vi~~~S~SK~~~l~G-l 209 (335)
T PRK14808 141 VVFIPNP--NNPTGHVFE-R---EEIERIL-KTGAFVALDEAYYEFH--GESYV-DLLKKYENLAVIRTFSKAFSLAA-Q 209 (335)
T ss_pred EEEEeCC--CCCCCCCcC-H---HHHHHHH-hcCCEEEEECchhhhc--CCchH-HHHHhCCCEEEEEechhhccCcc-c
Confidence 4556667 344566665 3 3455556 5899999999998773 22110 1111123343 7899999 78 6
Q ss_pred chheeEeCHHHHhhhc
Q 005009 697 PLAATLATNAVFDSFV 712 (719)
Q Consensus 697 Plsavl~~~~i~~~~~ 712 (719)
=+|.+++++++.+.+.
T Consensus 210 RvG~~v~~~~~~~~l~ 225 (335)
T PRK14808 210 RIGYVVSSEKFIDAYN 225 (335)
T ss_pred ceEEEEeCHHHHHHHH
Confidence 8888999999988774
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.045 Score=62.16 Aligned_cols=89 Identities=9% Similarity=-0.105 Sum_probs=58.1
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhc------CCcEEEeccccCccc---cCcc
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR------KIPVIFDEVFTGFWR---LGVE 672 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~------gilLI~DEVqTGfGR---tG~~ 672 (719)
+.|++.|.+ +...|++--+ ..+-|.+.| +++|.++|+++ |+.+.+|=+|.|+-. .++.
T Consensus 177 ~~L~~~i~~--------~t~lV~~t~g-~t~tG~idp----i~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~ 243 (431)
T TIGR01788 177 EQVVEAVDE--------NTIGVVCILG-TTYTGEYED----VKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDL 243 (431)
T ss_pred HHHHHHHhh--------CCeEEEEEeC-CCCCcccCC----HHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCc
Confidence 567777752 2345555554 777899999 99999999999 999999999987421 2331
Q ss_pred -ccccccCCCcceeeeh--hccCCCccchheeEeCHH
Q 005009 673 -TTADLLGCVPDIACYG--KLLTGGVIPLAATLATNA 706 (719)
Q Consensus 673 -~a~e~~gv~PDIvtlg--K~LggG~~Plsavl~~~~ 706 (719)
+-+. -...|.++++ |- +.|-...|++++++.
T Consensus 244 ~~~~~--~~~~DSis~s~HK~-~~~P~g~G~l~~r~~ 277 (431)
T TIGR01788 244 EWDFR--LPRVKSINVSGHKY-GLVYPGVGWVIWRDE 277 (431)
T ss_pred hhhcC--CCCceEEEECchhc-cCCCCCcEEEEEeCh
Confidence 1111 1246777653 44 323245677888765
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.1 Score=54.72 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=34.1
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
|+.|.|.|+-.|||||++|+.|..+|. +.|++|...-
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~-----~~G~~VlaID 37 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALA-----RLGESVLAID 37 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHH-----HCCCcEEEEe
Confidence 789999999999999999999999994 8899998765
|
It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined. |
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.019 Score=69.16 Aligned_cols=152 Identities=14% Similarity=0.150 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCcccc
Q 005009 444 PALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGA 523 (719)
Q Consensus 444 ~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~ga 523 (719)
+..+..+..++.+| .++.||..+||.+--.|+-++ . .++.+.|.++...|=+.+.+
T Consensus 206 ~I~eAq~~aA~~fg---A~~t~FlvNGST~gn~a~i~a---~------------------~~~gd~Vlv~RN~HKSv~~a 261 (755)
T PRK15029 206 AFGESEKYAARVFG---ADRSWSVVVGTSGSNRTIMQA---C------------------MTDNDVVVVDRNCHKSIEQG 261 (755)
T ss_pred HHHHHHHHHHHHhC---CCcEEEEeCChhHHHHHHHHH---h------------------cCCCCEEEeecccHHHHHHH
Confidence 34444445555677 467888877776544444333 1 22345777999999999999
Q ss_pred ccccCCC-CCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHH
Q 005009 524 MEAQAPS-PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSS 602 (719)
Q Consensus 524 lslt~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~ 602 (719)
+.++|.. .|-. |.. + .+-++.| ++.. ++. .+
T Consensus 262 l~L~ga~Pvyl~----------------P~~---~-~~Gi~~~------------i~~~-------------~~~---~e 293 (755)
T PRK15029 262 LILTGAKPVYMV----------------PSR---N-RYGIIGP------------IYPQ-------------EMQ---PE 293 (755)
T ss_pred HHHcCCeEEEec----------------ccc---c-ccCCccC------------CCcc-------------ccC---HH
Confidence 9998742 1111 110 0 0001101 0000 000 14
Q ss_pred HHHHHHhcCCCCC--CCCc-EEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccc
Q 005009 603 YISQNLLQNPGLK--VSGC-IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT 674 (719)
Q Consensus 603 ~le~~l~~~~~~~--~~~~-iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a 674 (719)
.+++.|+++...+ ...+ .++||+-|- -.|+..- ++.+.++|+++|++|++||.+-+..+....+.
T Consensus 294 ~i~~~l~~~p~~k~~~~~~~~avvlt~PT---Y~Gv~~d----i~~I~~~~h~~~~~llvDEAhGah~~F~~~~p 361 (755)
T PRK15029 294 TLQKKISESPLTKDKAGQKPSYCVVTNCT---YDGVCYN----AKEAQDLLEKTSDRLHFDEAWYGYARFNPIYA 361 (755)
T ss_pred HHHHHHHhCchhhhccccCceEEEEECCC---CcceeeC----HHHHHHHHHhcCCeEEEECccccccccCcccc
Confidence 5666665431111 1112 356666674 3466666 89999999999999999999977555566544
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.081 Score=61.75 Aligned_cols=104 Identities=17% Similarity=0.174 Sum_probs=62.9
Q ss_pred HHHHHHHhcCCCCCCCCcEE-EEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCcccc-Cccc-cccc-
Q 005009 602 SYISQNLLQNPGLKVSGCIG-ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRL-GVET-TADL- 677 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iA-AvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRt-G~~~-a~e~- 677 (719)
+.|++.+.+.. ....++. .+|+-| +.=.|.+ .+.+-+++|.++|++||+++|.|||..-+--. |+-+ .+..
T Consensus 256 ~~Le~~l~~~~--~~~~~~k~ivl~nP--~NPTG~v-ls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~ 330 (534)
T PLN02231 256 SELKKQLEDAR--SKGITVRALVVINP--GNPTGQV-LAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKV 330 (534)
T ss_pred HHHHHHHHHHh--hcCCCeEEEEEeCC--CCCCCcC-CCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHH
Confidence 45666664310 1112344 466667 3445654 47999999999999999999999999865221 2221 2111
Q ss_pred ---cCC---Cccee---eehhccCC--CccchheeEe---CHHHHhhh
Q 005009 678 ---LGC---VPDIA---CYGKLLTG--GVIPLAATLA---TNAVFDSF 711 (719)
Q Consensus 678 ---~gv---~PDIv---tlgK~Lgg--G~~Plsavl~---~~~i~~~~ 711 (719)
.|. ...++ .+||++.| | +-+|.+++ .+++.+.+
T Consensus 331 ~~~~g~~~~~~~vi~l~S~SK~~~g~pG-lRiGy~~~~~~~~~l~~~l 377 (534)
T PLN02231 331 ARSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTGFTSDVREQI 377 (534)
T ss_pred HhhhccccCCceEEEEeccCcccccCCc-cceEEEEEecCCHHHHHHH
Confidence 121 11244 67998743 6 56676765 57777665
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.11 Score=58.32 Aligned_cols=84 Identities=12% Similarity=0.121 Sum_probs=57.2
Q ss_pred EEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc-ccccccCCCcc-ee---eehhccC-CCc
Q 005009 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPD-IA---CYGKLLT-GGV 695 (719)
Q Consensus 622 AvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~-~a~e~~gv~PD-Iv---tlgK~Lg-gG~ 695 (719)
.++.-| +.=.|.+. +.+-+++|.++|++||+++|.||+...|-.-+.. -....+.-.+| ++ +|||.+| .|
T Consensus 180 i~l~nP--~NPTG~~~-s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~pG- 255 (409)
T PRK07590 180 IYLCFP--NNPTGTVL-TKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFSKTAGFTG- 255 (409)
T ss_pred EEEeCC--CCCcCCcC-CHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecCccccCCcC-
Confidence 334466 44456654 7888999999999999999999999876322321 11111111123 23 6999997 78
Q ss_pred cchheeEeCHHHHh
Q 005009 696 IPLAATLATNAVFD 709 (719)
Q Consensus 696 ~Plsavl~~~~i~~ 709 (719)
+=+|.+++.+++++
T Consensus 256 lRiG~~i~~~~li~ 269 (409)
T PRK07590 256 TRCAYTVVPKELKG 269 (409)
T ss_pred ceeEEEEcCHHHhh
Confidence 68899999998886
|
|
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.078 Score=56.73 Aligned_cols=36 Identities=14% Similarity=0.179 Sum_probs=31.8
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
...+=|||+ .|+|||++.-+|.+-|. ++|+||+..-
T Consensus 51 a~viGITG~-PGaGKSTli~~L~~~l~-----~~G~rVaVlA 86 (323)
T COG1703 51 AHVIGITGV-PGAGKSTLIEALGRELR-----ERGHRVAVLA 86 (323)
T ss_pred CcEEEecCC-CCCchHHHHHHHHHHHH-----HCCcEEEEEE
Confidence 346889999 89999999999999995 8899998875
|
|
| >PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.017 Score=61.64 Aligned_cols=36 Identities=17% Similarity=0.146 Sum_probs=32.6
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KP 79 (719)
|+.|.|+|. +|+|||+++.-|++.|. ++| +|++.|=
T Consensus 1 M~~i~i~G~-~gSGKTTLi~~Li~~L~-----~~G-~V~~IKh 36 (274)
T PRK14493 1 MKVLSIVGY-KATGKTTLVERLVDRLS-----GRG-RVGTVKH 36 (274)
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHHHH-----hCC-CEEEEEE
Confidence 568999999 69999999999999994 889 8999994
|
|
| >COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.096 Score=54.13 Aligned_cols=88 Identities=14% Similarity=0.181 Sum_probs=54.6
Q ss_pred CcEEEEeCC-----CCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChH---HHHHHHHHHHHh-CCCcEEEEEEccCCC
Q 005009 221 EILCIVETA-----GGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGI---SGTISAYESLKL-RGYDVVAVVFEDHGL 291 (719)
Q Consensus 221 ~d~vivEGa-----gG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i---~~~~~~~~~l~~-~~~~v~gvi~N~~~~ 291 (719)
-|+|+-.=- ||+..|+.+++.. -+.+|.++.-.++ |.+.-.+.-+.. .++++.|+|.|.-..
T Consensus 118 ~DvviyDVLGDVVCGGFAmPiReg~Ad---------eiyIVtSge~MalYAANNI~kgi~k~a~~~~~rLgGiIcNsr~~ 188 (278)
T COG1348 118 LDVVIYDVLGDVVCGGFAMPIREGYAD---------EIYIVTSGEMMALYAANNIAKGIRKYAKTGGVRLGGIICNSRSV 188 (278)
T ss_pred CCEEEEeccCceeecceeeehhcccCc---------EEEEEecCchHHHHHHHHHHHHHHHHhhcCCcceeeEEecCCCc
Confidence 477765543 7778887655422 3556666554443 344444444443 458899999999854
Q ss_pred CCHHHH-HHhhcC-CCcEEe-cCCCCCCC
Q 005009 292 VNEVPL-MSYLRN-RVPVLV-LPPLPQDS 317 (719)
Q Consensus 292 ~~~~~l-~~~~~~-~~pvlg-lP~~~~~~ 317 (719)
..+..+ +++.++ +.|+++ ||+.+...
T Consensus 189 ~~e~e~v~~fa~~igt~li~~vPr~~ivq 217 (278)
T COG1348 189 DRERELVEAFAERLGTQLIHFVPRDNIVQ 217 (278)
T ss_pred ccHHHHHHHHHHHhCCceEeeccchHHHH
Confidence 444444 444444 999999 99977543
|
|
| >PRK13231 nitrogenase reductase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.036 Score=58.34 Aligned_cols=93 Identities=11% Similarity=0.046 Sum_probs=52.3
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCC-CCHHHHH
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGL-VNEVPLM 298 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~-~~~~~l~ 298 (719)
+||+|||-+.|++....- ..... ....+ -+|+|+....-++..+-..++.++.-+..+.|+|.|.... ...+.+.
T Consensus 113 ~yD~ViIDt~~~~~~~~~--~~~~~-~~aaD-~vlip~~p~~~si~~~~~~~~~i~~~~~~~~~vv~~~~~~~~~~~~~~ 188 (264)
T PRK13231 113 DIDVVIYDVLGDVVCGGF--SVPLR-EDYAD-EVYIVTSGEYMSLYAANNIARGIKKLKGKLGGIICNCRGIDNEVEIVS 188 (264)
T ss_pred CCCEEEEecCCCceEccc--ccccc-ccccc-eeEEEecCchhHHHHHHHHHHHHHHcCCcceEEEEcCCCCccHHHHHH
Confidence 499999999664321110 00000 01111 4667777776677777666676665444577888887632 2233333
Q ss_pred HhhcC-CCcEEe-cCCCCCC
Q 005009 299 SYLRN-RVPVLV-LPPLPQD 316 (719)
Q Consensus 299 ~~~~~-~~pvlg-lP~~~~~ 316 (719)
+..+. +.++++ ||.....
T Consensus 189 ~l~~~~~~~vl~~I~~~~~v 208 (264)
T PRK13231 189 EFASRIGSRIIGVIPRSNLV 208 (264)
T ss_pred HHHHHhCCCeEEeCCCCHHH
Confidence 33322 778888 7776543
|
|
| >PRK13233 nifH nitrogenase reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.019 Score=60.86 Aligned_cols=36 Identities=14% Similarity=0.257 Sum_probs=30.3
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCC-CCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSS-ANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~-~g~~v~~~K 78 (719)
++.|-|++ -.|||||+++.-|..+|. + +|+||..+=
T Consensus 2 ~~vIav~~-KGGVGKTT~a~nLA~~La-----~~~G~rvLliD 38 (275)
T PRK13233 2 TRKIAIYG-KGGIGKSTTTQNTAAAMA-----YFHDKKVFIHG 38 (275)
T ss_pred ceEEEEEc-CCCCcHHHHHHHHHHHHH-----HhcCCeEEEec
Confidence 46788884 899999999999999994 5 599998764
|
|
| >PRK13849 putative crown gall tumor protein VirC1; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.16 Score=52.77 Aligned_cols=37 Identities=22% Similarity=0.283 Sum_probs=33.1
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
|+.|.|.+.-.|||||+++..|+.+|. ++|++|..+-
T Consensus 1 M~iI~v~n~KGGvGKTT~a~nLA~~la-----~~G~~VlliD 37 (231)
T PRK13849 1 MKLLTFCSFKGGAGKTTALMGLCAALA-----SDGKRVALFE 37 (231)
T ss_pred CeEEEEECCCCCccHHHHHHHHHHHHH-----hCCCcEEEEe
Confidence 568999999999999999999999994 7899997765
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.087 Score=58.30 Aligned_cols=100 Identities=11% Similarity=0.115 Sum_probs=63.6
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCC
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~ 681 (719)
+.+++.+.+ ....++.+|++-+- +.=.|... +.+-++.+.++| +++++|.||+...|...... ....-.
T Consensus 155 ~~l~~~~~~----~~~~~~k~i~l~~P-~NPTG~~~-s~~~l~~l~~~~--~~~~iI~De~Y~~~~~~~~~---~~~~~~ 223 (374)
T PRK02610 155 AAAQSAIEQ----TQNPPVRVVFVVHP-NSPTGNPL-TAAELEWLRSLP--EDILVVIDEAYFEFSQTTLV---GELAQH 223 (374)
T ss_pred HHHHHHHHh----hcCCCceEEEEeCC-CCCCCCCC-CHHHHHHHHhcc--CCcEEEEeccccccCccchH---HHHhcC
Confidence 445555542 01235556655443 66667776 455677888877 49999999999877321111 111112
Q ss_pred ccee---eehhccC-CCccchheeEeCHHHHhhhcC
Q 005009 682 PDIA---CYGKLLT-GGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 682 PDIv---tlgK~Lg-gG~~Plsavl~~~~i~~~~~~ 713 (719)
+.++ +|+|.+| .| +-+|.+++++++.+.+..
T Consensus 224 ~~~ivi~SfSK~~g~~G-lRiG~~v~~~~l~~~l~~ 258 (374)
T PRK02610 224 PNWVILRTFSKAFRLAA-HRVGYAIGHPELIAVLEK 258 (374)
T ss_pred CCEEEEEecchhccCcc-cceeeeecCHHHHHHHHH
Confidence 3433 7999996 68 799999999999887753
|
|
| >PRK13236 nitrogenase reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.029 Score=60.45 Aligned_cols=36 Identities=8% Similarity=0.230 Sum_probs=31.3
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
|+.+-+.| -.|||||++++-|+.+|. ++|+||..+=
T Consensus 6 ~~~~~~~G-KGGVGKTt~a~NLA~~La-----~~G~rVLliD 41 (296)
T PRK13236 6 IRQIAFYG-KGGIGKSTTSQNTLAAMA-----EMGQRILIVG 41 (296)
T ss_pred ceEEEEEC-CCcCCHHHHHHHHHHHHH-----HCCCcEEEEE
Confidence 46777877 789999999999999994 7899998875
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.1 Score=57.85 Aligned_cols=213 Identities=13% Similarity=0.116 Sum_probs=126.3
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlK 479 (719)
..+|+.+. -+.+|-. |++.+++++.++.+.. +..+...+|.+.+++..+.-..+.|+..|...|..+..++
T Consensus 23 ~~i~LssN--enP~gp~--~~~~~~~~~~~~~~~r-----YPd~~~~~l~~a~a~~~~~~~~~~V~~gnGsde~i~~l~~ 93 (356)
T COG0079 23 GIIKLSSN--ENPYGPP--PKVIEAIRAALDKLNR-----YPDPDYRELRAALAEYYGVVDPENVLVGNGSDELIELLVR 93 (356)
T ss_pred cceeecCC--CCCCCCC--HHHHHHHHHHHHhhcc-----CCCCcHHHHHHHHHHHhCCCCcceEEEcCChHHHHHHHHH
Confidence 36677663 3356664 8999999988774432 3334567888888887762113578888888888888877
Q ss_pred HHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcc
Q 005009 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (719)
Q Consensus 480 lA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (719)
+.. .. ..+|+...-+|.-....+.... .. .
T Consensus 94 ~~~-----~~----------------gd~vl~~~Ptf~~Y~~~a~~~g-~~----------------------------~ 123 (356)
T COG0079 94 AFV-----EP----------------GDTVLIPEPTFSMYEIAAQLAG-AE----------------------------V 123 (356)
T ss_pred Hhh-----cC----------------CCEEEEcCCChHHHHHHHHhcC-Ce----------------------------E
Confidence 762 11 1467777776654322221111 00 0
Q ss_pred eeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCC
Q 005009 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (719)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (719)
+.++..+ |. .| .+.+...+. ...-..+|.-|- .-. |... +
T Consensus 124 ~~v~~~~-~~-----------~d------------------~~~~~~~~~-------~~~~lv~i~nPN-NPT-G~~~-~ 163 (356)
T COG0079 124 VKVPLKE-FR-----------LD------------------LDAILAAIR-------DKTKLVFLCNPN-NPT-GTLL-P 163 (356)
T ss_pred EEecccc-cc-----------cC------------------HHHHHHhhh-------cCCCEEEEeCCC-CCC-CCCC-C
Confidence 1122111 10 00 122333332 112246777785 444 4444 4
Q ss_pred HHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcc-ee---eehhccC-CCccchheeEeCHHHHhhhcCC
Q 005009 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPD-IA---CYGKLLT-GGVIPLAATLATNAVFDSFVGD 714 (719)
Q Consensus 640 ~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PD-Iv---tlgK~Lg-gG~~Plsavl~~~~i~~~~~~~ 714 (719)
.+-++++.+.|.+ ++++|+||...=|+. --...... .++ ++ ||||+.| .| +=+|.+++++++.+.+..-
T Consensus 164 ~~~l~~l~~~~~~-~~~vVvDEAY~eF~~---~~~~~l~~-~~~nlivlRTfSKa~gLAG-lRlGy~ia~~~~i~~l~~v 237 (356)
T COG0079 164 REELRALLEALPE-GGLVVIDEAYIEFSP---ESSLELLK-YPPNLIVLRTFSKAFGLAG-LRVGYAIANPELIAALNKV 237 (356)
T ss_pred HHHHHHHHHhCCC-CcEEEEeCchhhcCC---chhhhhcc-CCCCEEEEEecHHhhhcch-hceeeccCCHHHHHHHHHh
Confidence 5666777777777 999999999988855 11222222 455 55 8999887 45 5777799999999988654
Q ss_pred CCC
Q 005009 715 SKK 717 (719)
Q Consensus 715 ~~~ 717 (719)
-.+
T Consensus 238 r~p 240 (356)
T COG0079 238 RPP 240 (356)
T ss_pred cCC
Confidence 333
|
|
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.035 Score=61.74 Aligned_cols=169 Identities=18% Similarity=0.100 Sum_probs=104.2
Q ss_pred CChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCc
Q 005009 441 VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (719)
Q Consensus 441 ~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t 520 (719)
.++....|.+.++++-+ ...++.++||-.|.-.|+.... +...+||.+...|+|.
T Consensus 75 ~nPt~~~le~~iaal~g---a~~~l~fsSGmaA~~~al~~L~---------------------~~g~~iV~~~~~Y~gT- 129 (409)
T KOG0053|consen 75 GNPTRDVLESGIAALEG---AAHALLFSSGMAAITVALLHLL---------------------PAGDHIVATGDVYGGT- 129 (409)
T ss_pred CCCchHHHHHHHHHHhC---CceEEEecccHHHHHHHHHHhc---------------------CCCCcEEEeCCCcccH-
Confidence 46666788899998876 3579999999888888888762 2234799999999983
Q ss_pred cccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHH
Q 005009 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (719)
Q Consensus 521 ~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~ 600 (719)
..-+.-... .++.. ..|-|.+ +
T Consensus 130 ~~~l~~~~~-------------~~gie------------------------------~~~vd~~----------~----- 151 (409)
T KOG0053|consen 130 LRILRKFLP-------------KFGGE------------------------------GDFVDVD----------D----- 151 (409)
T ss_pred HHHHHHHHH-------------HhCce------------------------------eeeechh----------h-----
Confidence 221111100 00000 0011110 1
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC
Q 005009 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (719)
Q Consensus 601 ~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv 680 (719)
.+.+++.++ .++-+|.+|.. ..--.-++. +++++++|+++|+++|+|+...+. .-++-+..
T Consensus 152 ~~~~~~~i~--------~~t~~V~~ESP-sNPll~v~D----I~~l~~la~~~g~~vvVDnTf~~p------~~~~pL~l 212 (409)
T KOG0053|consen 152 LKKILKAIK--------ENTKAVFLESP-SNPLLKVPD----IEKLARLAHKYGFLVVVDNTFGSP------YNQDPLPL 212 (409)
T ss_pred HHHHHHhhc--------cCceEEEEECC-CCCcccccc----HHHHHHHHhhCCCEEEEeCCcCcc------cccChhhc
Confidence 234555553 37899999975 222223333 889999999999999999998542 33444444
Q ss_pred Ccceee--ehhccCCCccchh-eeEeC-HHHHhhh
Q 005009 681 VPDIAC--YGKLLTGGVIPLA-ATLAT-NAVFDSF 711 (719)
Q Consensus 681 ~PDIvt--lgK~LggG~~Pls-avl~~-~~i~~~~ 711 (719)
-.|||+ .-|=++|.-=-|+ +++.+ ++++..+
T Consensus 213 GADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l 247 (409)
T KOG0053|consen 213 GADIVVHSATKYIGGHSDVIGGSVVLNSEELASRL 247 (409)
T ss_pred CCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHH
Confidence 589996 5698987322233 34443 5655544
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.038 Score=60.51 Aligned_cols=86 Identities=15% Similarity=0.200 Sum_probs=61.1
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee---eehhccC-CCcc
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVI 696 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv---tlgK~Lg-gG~~ 696 (719)
..++.-|- .=.|... +.+-++++.+.|.++++++|+||+...|...-..... .+ .++++ +|+|.+| .| +
T Consensus 133 ~v~l~nPn--NPTG~~~-s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~~s~~~~--~~-~~~vi~l~SfSK~~gl~G-l 205 (339)
T PRK06959 133 HLIVVNPN--NPTAERL-PAARLLRWHAQLAARGGTLIVDEAFADTLPAASLAAH--TD-RPGLVVLRSVGKFFGLAG-V 205 (339)
T ss_pred EEEEeCCC--CCCCCCC-CHHHHHHHHHHHHHcCCEEEEECCCccCCCcccchhc--cC-CCCEEEEecChhhcCCcc-h
Confidence 57788884 4456655 5666888888899999999999999876321111111 11 24443 7999998 78 6
Q ss_pred chheeEeCHHHHhhhcC
Q 005009 697 PLAATLATNAVFDSFVG 713 (719)
Q Consensus 697 Plsavl~~~~i~~~~~~ 713 (719)
-+|.+++++++++.+..
T Consensus 206 RiGy~v~~~~li~~l~~ 222 (339)
T PRK06959 206 RAGFVLAAPALLAALRD 222 (339)
T ss_pred heEEEecCHHHHHHHHH
Confidence 88899999999988754
|
|
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.062 Score=57.49 Aligned_cols=96 Identities=17% Similarity=0.167 Sum_probs=67.0
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC
Q 005009 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (719)
Q Consensus 601 ~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv 680 (719)
++.+++.|.+ .++.+|++-=. -++.|+.- ..++...++|++|+++|++|-|-+ + .|.-|.++.|||
T Consensus 131 le~i~~~lsq-------h~p~~vfv~hg-dsSTgV~q---~~~~~~g~lc~k~~~lllVD~VaS-l--ggt~F~mDewgV 196 (385)
T KOG2862|consen 131 LEEITEKLSQ-------HKPKAVFVTHG-DSSTGVLQ---DLLAISGELCHKHEALLLVDTVAS-L--GGTEFEMDEWGV 196 (385)
T ss_pred HHHHHHHHHh-------cCCceEEEEec-Cccccccc---hHHHHHHHHhhcCCeEEEEechhh-c--CCccceehhhcc
Confidence 4667777774 23444444332 34556643 357778899999999999999997 3 467899999998
Q ss_pred CcceeeehhccCC--CccchheeEeCHHHHhhhcC
Q 005009 681 VPDIACYGKLLTG--GVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 681 ~PDIvtlgK~Lgg--G~~Plsavl~~~~i~~~~~~ 713 (719)
.-=+.--=|+|++ |. +-+..++..++.++.
T Consensus 197 DvaytgSQKaL~aP~GL---siisfS~ka~~~~~~ 228 (385)
T KOG2862|consen 197 DVAYTGSQKALGAPAGL---SIISFSDKALEAIRD 228 (385)
T ss_pred cEEEecchhhcCCCCCc---ceeecCHHHHHHHhh
Confidence 5545556799986 64 446777777777754
|
|
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.26 Score=53.25 Aligned_cols=36 Identities=14% Similarity=0.124 Sum_probs=31.3
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
+..+.|+|. +|+|||+++..|+..+. ++|++|..+.
T Consensus 34 ~~~i~i~G~-~G~GKttl~~~l~~~~~-----~~~~~v~~i~ 69 (300)
T TIGR00750 34 AHRVGITGT-PGAGKSTLLEALGMELR-----RRGLKVAVIA 69 (300)
T ss_pred ceEEEEECC-CCCCHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 457899988 99999999999999994 7799998766
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.05 Score=60.07 Aligned_cols=88 Identities=14% Similarity=0.141 Sum_probs=57.8
Q ss_pred EEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee---eehhccC-CCc
Q 005009 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGV 695 (719)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv---tlgK~Lg-gG~ 695 (719)
+.+|++... +.-.|.+.+ .+-++++.+.|+ +++++|+||+...|...... ....+..+.++ +|+|.+| .|
T Consensus 153 ~~lv~l~~p-~NPTG~~~~-~~~~~~l~~~~~-~~~~iI~Deay~~f~~~~~~--~~~~~~~~~vi~~~SfSK~~gl~G- 226 (364)
T PRK04781 153 AKLVFLCSP-SNPAGSAIA-LDQIERALQALQ-GKALVVVDEAYGEFSDVPSA--VGLLARYDNLAVLRTLSKAHALAA- 226 (364)
T ss_pred CeEEEEcCC-CCCCCCCcC-HHHHHHHHHhCC-CCcEEEEeCcchhhcCCcch--HHHHhhCCCEEEEecChhhccccc-
Confidence 444554332 666788774 555566666664 48999999999877421111 11122234544 7999998 78
Q ss_pred cchheeEeCHHHHhhhcC
Q 005009 696 IPLAATLATNAVFDSFVG 713 (719)
Q Consensus 696 ~Plsavl~~~~i~~~~~~ 713 (719)
+=+|.+++++++++.+..
T Consensus 227 lRvGy~v~~~~l~~~l~~ 244 (364)
T PRK04781 227 ARIGSLIANAELIAVLRR 244 (364)
T ss_pred ceeeeeeCCHHHHHHHHh
Confidence 688889999999988764
|
|
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.063 Score=59.64 Aligned_cols=55 Identities=13% Similarity=-0.049 Sum_probs=41.4
Q ss_pred HHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHH
Q 005009 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA 481 (719)
Q Consensus 419 P~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA 481 (719)
.+..+++.+.+.....++ -+...+|++.+++.+| ...+.-++||+.|.+.|++..
T Consensus 15 ~~e~~~v~~vl~sg~i~~-----G~~v~~FE~~~ae~~G---~k~ava~~sgT~AL~laL~al 69 (374)
T COG0399 15 EEELAAVQEVLKSGWLTG-----GPFVRRFEQAFAEYLG---VKYAVAVSSGTAALHLALLAL 69 (374)
T ss_pred hHHHHHHHHHHHcCCeec-----ChHHHHHHHHHHHHhC---CCeEEEecChHHHHHHHHHhc
Confidence 345556666665543322 3566799999999998 468999999999999999966
|
|
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.036 Score=62.03 Aligned_cols=80 Identities=14% Similarity=0.203 Sum_probs=50.5
Q ss_pred CcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeeh--hccCC-C
Q 005009 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTG-G 694 (719)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~Lgg-G 694 (719)
+++..|++|-+ ....+.+.+ +++|.++|+++| +|+|-.+. - .+.....+.-.|++++| |-|+| |
T Consensus 147 ~~tklv~~e~~-snpt~~v~D----i~~I~~la~~~~--lvVD~t~~-s-----~~~~~pl~~gaDivv~S~tK~i~G~~ 213 (384)
T PRK06434 147 SNYDLIYAESI-TNPTLKVPD----IKNVSSFCHEND--VIVDATFA-S-----PYNQNPLDLGADVVIHSATKYISGHS 213 (384)
T ss_pred CCeeEEEEEcC-CCCCceeec----HHHHHHHHHHcC--eEEECCCC-C-----cccCCchhcCCCEEEeecccccCCCC
Confidence 45778889976 545555555 999999999998 56799973 1 12223344568998765 77865 2
Q ss_pred ccchheeEe-CHHHHhh
Q 005009 695 VIPLAATLA-TNAVFDS 710 (719)
Q Consensus 695 ~~Plsavl~-~~~i~~~ 710 (719)
=.=.|++++ ++++++.
T Consensus 214 d~~gG~vv~~~~~~~~~ 230 (384)
T PRK06434 214 DVVMGVAGTNNKSIFNN 230 (384)
T ss_pred CceEEEEecCcHHHHHH
Confidence 111344545 3455443
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.071 Score=54.09 Aligned_cols=91 Identities=15% Similarity=0.130 Sum_probs=49.3
Q ss_pred cCcEEEEeCCCCCCCCCCCCc--hhHHHHhhc-CCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCC-CCCHH
Q 005009 220 MEILCIVETAGGVASPGPSGS--LQCDLYRPF-RLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHG-LVNEV 295 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~--~~~dla~~l-~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~-~~~~~ 295 (719)
++|+|||.++| .+|.+... -..++.+.. ...++||.+...+.- ..-...+..+ ..++-++|+-+.. ....-
T Consensus 83 ~~D~vlIDT~G--r~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~-~~~~~~~~~~--~~~~~~lIlTKlDet~~~G 157 (196)
T PF00448_consen 83 GYDLVLIDTAG--RSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE-DLEQALAFYE--AFGIDGLILTKLDETARLG 157 (196)
T ss_dssp TSSEEEEEE-S--SSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH-HHHHHHHHHH--HSSTCEEEEESTTSSSTTH
T ss_pred CCCEEEEecCC--cchhhHHHHHHHHHHhhhcCCccceEEEecccChH-HHHHHHHHhh--cccCceEEEEeecCCCCcc
Confidence 48999999998 44432211 112333333 456899999766542 2222222222 2356799999983 23333
Q ss_pred HHHHhhcC-CCcEEecCCCCC
Q 005009 296 PLMSYLRN-RVPVLVLPPLPQ 315 (719)
Q Consensus 296 ~l~~~~~~-~~pvlglP~~~~ 315 (719)
.+.+.... +.||.-+-.-+.
T Consensus 158 ~~l~~~~~~~~Pi~~it~Gq~ 178 (196)
T PF00448_consen 158 ALLSLAYESGLPISYITTGQR 178 (196)
T ss_dssp HHHHHHHHHTSEEEEEESSSS
T ss_pred cceeHHHHhCCCeEEEECCCC
Confidence 33333322 899877644444
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.14 Score=58.69 Aligned_cols=89 Identities=20% Similarity=0.253 Sum_probs=57.7
Q ss_pred cEEE-EEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccc--ccc------CC-Ccc-e---
Q 005009 619 CIGA-LIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA--DLL------GC-VPD-I--- 684 (719)
Q Consensus 619 ~iAA-vIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~--e~~------gv-~PD-I--- 684 (719)
++.+ +|.-| +.=-|.. .+.+.+++|.++|++||+.+|.||+...+--.+.-+.. +.. +. .++ +
T Consensus 191 ~~k~v~l~nP--~NPTG~~-~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l 267 (468)
T PLN02450 191 KVKGVLITNP--SNPLGTT-TTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIV 267 (468)
T ss_pred CeeEEEEecC--CCCCCcc-cCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcEEEE
Confidence 4544 44456 3334554 47899999999999999999999999875333422211 111 11 122 2
Q ss_pred eeehhccC-CCccchheeEeCHH-HHhhh
Q 005009 685 ACYGKLLT-GGVIPLAATLATNA-VFDSF 711 (719)
Q Consensus 685 vtlgK~Lg-gG~~Plsavl~~~~-i~~~~ 711 (719)
-+|+|.++ .| +=+|.+++.++ +.+.+
T Consensus 268 ~S~SK~~~l~G-lRiG~li~~~~~l~~~~ 295 (468)
T PLN02450 268 YSLSKDLGLPG-FRVGAIYSNDEMVVSAA 295 (468)
T ss_pred EeccccCCCCC-ccEEEEEECCHHHHHHH
Confidence 37999998 78 68999999744 44443
|
|
| >PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.18 Score=52.30 Aligned_cols=37 Identities=19% Similarity=0.307 Sum_probs=33.5
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
|+.|-+.++-.|+|||+.+++|+..|. ++|.+|.-+-
T Consensus 1 M~vItf~s~KGGaGKTT~~~~LAs~la-----~~G~~V~lID 37 (231)
T PF07015_consen 1 MPVITFASSKGGAGKTTAAMALASELA-----ARGARVALID 37 (231)
T ss_pred CCeEEEecCCCCCcHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 678889999999999999999999994 8899998776
|
In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA []. |
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.14 Score=57.02 Aligned_cols=88 Identities=14% Similarity=0.203 Sum_probs=49.2
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHh--hcCCC--EEEEEcCCCC--hHHHHHHHHHHHHhC--C--CcEEEEEEccC
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYR--PFRLP--GILVGDGRLG--GISGTISAYESLKLR--G--YDVVAVVFEDH 289 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~--~l~~p--vilV~~~~~g--~i~~~~~~~~~l~~~--~--~~v~gvi~N~~ 289 (719)
++|++||.++| .+|.+. ...-.++. ....| ++||.+...+ .+.+++..+..+... + .++.|+|+-+.
T Consensus 215 ~~DlVLIDTaG--~~~~d~-~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKl 291 (374)
T PRK14722 215 NKHMVLIDTIG--MSQRDR-TVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKL 291 (374)
T ss_pred CCCEEEEcCCC--CCcccH-HHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEecc
Confidence 38999999998 455432 22222222 22333 5788875543 456666666544311 1 25789999998
Q ss_pred C-CCCHHHHHHhhcC-CCcEEec
Q 005009 290 G-LVNEVPLMSYLRN-RVPVLVL 310 (719)
Q Consensus 290 ~-~~~~~~l~~~~~~-~~pvlgl 310 (719)
. ....-.+.+..-. ++||.-+
T Consensus 292 DEt~~~G~~l~~~~~~~lPi~yv 314 (374)
T PRK14722 292 DEASNLGGVLDTVIRYKLPVHYV 314 (374)
T ss_pred ccCCCccHHHHHHHHHCcCeEEE
Confidence 3 2333333333222 8898664
|
|
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.065 Score=56.47 Aligned_cols=37 Identities=14% Similarity=0.085 Sum_probs=32.4
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
|+..++|+|. .|+|||+++.++..++. ++|++|..+.
T Consensus 1 ~~~~i~v~G~-~G~GKTt~~~~~~~~l~-----~~g~~v~~i~ 37 (253)
T PRK13768 1 MMYIVFFLGT-AGSGKTTLTKALSDWLE-----EQGYDVAIVN 37 (253)
T ss_pred CcEEEEEECC-CCccHHHHHHHHHHHHH-----hcCCceEEEE
Confidence 4567899999 99999999999999994 7799988876
|
|
| >PRK13235 nifH nitrogenase reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.17 Score=53.59 Aligned_cols=36 Identities=14% Similarity=0.266 Sum_probs=30.8
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
|+.+-|++ -.|||||++|.-|..+|. ++|+||..+=
T Consensus 1 m~~iav~~-KGGVGKTT~~~nLA~~La-----~~G~rVLlID 36 (274)
T PRK13235 1 MRKVAIYG-KGGIGKSTTTQNTVAGLA-----EMGKKVMVVG 36 (274)
T ss_pred CCEEEEeC-CCCccHHHHHHHHHHHHH-----HCCCcEEEEe
Confidence 45777786 899999999999999994 8899998764
|
|
| >PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.077 Score=56.02 Aligned_cols=92 Identities=12% Similarity=0.217 Sum_probs=54.1
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCCh---HHHHHHHHHHHHhCC-CcEEEEEEccCCCCC-H
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGG---ISGTISAYESLKLRG-YDVVAVVFEDHGLVN-E 294 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~---i~~~~~~~~~l~~~~-~~v~gvi~N~~~~~~-~ 294 (719)
++|+|+-.-.|=+-++. ..+=+-+..--.|++|.++..-+ .|.+..+++.+..++ .++.|+|.|.-..++ .
T Consensus 116 ~~D~v~yDVLGDVVCGG----FamPir~g~a~evyIVtSge~mslyAANNI~~~i~~~~~~g~~~l~GiI~N~r~~~~e~ 191 (273)
T PF00142_consen 116 DYDFVLYDVLGDVVCGG----FAMPIREGYAQEVYIVTSGEFMSLYAANNICKAIKNFADRGGARLGGIICNSRNVDDEE 191 (273)
T ss_dssp TSSEEEEEEESSSSCTT----TTHHHHTTS-SEEEEEEBSSHHHHHHHHHHHHHHHHHCTTSS-EEEEEEEE-SSSTTHH
T ss_pred CCceEEEEEEeeeEEee----eehhhhhccCCEEEEEecCcHHHHHHHHHHHHHHHHHhccCCCceEEEEecCCCCCCch
Confidence 47888877654332221 12233333334678888877554 566667777776554 689999999664344 4
Q ss_pred HHHHHhhcC-CCcEEe-cCCCCC
Q 005009 295 VPLMSYLRN-RVPVLV-LPPLPQ 315 (719)
Q Consensus 295 ~~l~~~~~~-~~pvlg-lP~~~~ 315 (719)
+.+.++.++ +.|+++ ||+.+.
T Consensus 192 ~~v~~fa~~~g~~i~~~iPr~~~ 214 (273)
T PF00142_consen 192 EIVEDFAERIGTPIIAFIPRSEI 214 (273)
T ss_dssp HHHHHHHHHHTSEEEEEE---HH
T ss_pred HHHHHHHHHcCCcEEEecCchHH
Confidence 444445444 999999 999764
|
Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H .... |
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.11 Score=60.76 Aligned_cols=97 Identities=9% Similarity=-0.091 Sum_probs=63.4
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC-
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC- 680 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv- 680 (719)
+.|++.|++-. +.+....+|+.--- ...-|.+-| +++|.++|++||+.|-+|=...|+...-..+..-..|+
T Consensus 272 ~~L~~~I~~d~--~~g~~P~~VvaTaG-TT~tGaiDp----l~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie 344 (539)
T PLN02590 272 ESLEEAISHDL--AKGFIPFFICATVG-TTSSAAVDP----LVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIE 344 (539)
T ss_pred HHHHHHHHHHH--hcCCCcEEEEEEeC-CCCCcccCC----HHHHHHHHHHhCCeEEEecchhhhhhcChhhHHHhcCCc
Confidence 44555554310 12334556666554 555688888 99999999999999999988877643322222223365
Q ss_pred Ccceee--ehhccCCCccchheeEeCHH
Q 005009 681 VPDIAC--YGKLLTGGVIPLAATLATNA 706 (719)
Q Consensus 681 ~PDIvt--lgK~LggG~~Plsavl~~~~ 706 (719)
..|=++ .=|-|.-. ++.|++++++.
T Consensus 345 ~ADSit~D~HK~l~~p-~~cg~llvr~~ 371 (539)
T PLN02590 345 NADSFNMNAHKWLFAN-QTCSPLWVKDR 371 (539)
T ss_pred cCCEEEECchhhcCcC-cCEEEEEecCH
Confidence 478665 46777777 58888999864
|
|
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.13 Score=61.94 Aligned_cols=85 Identities=16% Similarity=0.201 Sum_probs=48.8
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcC----CCEEEEEcCCCC--hHHHHHHHHHHHHhCCCcEEEEEEccCC-CC
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFR----LPGILVGDGRLG--GISGTISAYESLKLRGYDVVAVVFEDHG-LV 292 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~----~pvilV~~~~~g--~i~~~~~~~~~l~~~~~~v~gvi~N~~~-~~ 292 (719)
++|+|||.++| .++.+. ..+-++.+..+ .-++||.+.-.+ .++.++..+... .+.++-|+||-|.+ ..
T Consensus 263 ~~D~VLIDTAG--Rs~~d~-~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~--~~~~i~glIlTKLDEt~ 337 (767)
T PRK14723 263 DKHLVLIDTVG--MSQRDR-NVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHG--AGEDVDGCIITKLDEAT 337 (767)
T ss_pred CCCEEEEeCCC--CCccCH-HHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhc--ccCCCCEEEEeccCCCC
Confidence 38999999999 455332 23333433222 348999986543 244444444322 23468899999983 22
Q ss_pred CHHH---HHHhhcCCCcEEecC
Q 005009 293 NEVP---LMSYLRNRVPVLVLP 311 (719)
Q Consensus 293 ~~~~---l~~~~~~~~pvlglP 311 (719)
..-. +...+ ++||.-|-
T Consensus 338 ~~G~iL~i~~~~--~lPI~yit 357 (767)
T PRK14723 338 HLGPALDTVIRH--RLPVHYVS 357 (767)
T ss_pred CccHHHHHHHHH--CCCeEEEe
Confidence 3323 33333 88986653
|
|
| >PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.022 Score=61.26 Aligned_cols=38 Identities=8% Similarity=0.094 Sum_probs=32.4
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
+.+.+.+.||+..+||-+.++.|.++|+ ++|+++.+.-
T Consensus 111 ~~~rv~~vGTDcavGK~tTal~L~~~l~-----~~G~~a~fva 148 (301)
T PF07755_consen 111 KAKRVLTVGTDCAVGKMTTALELRRALR-----ERGINAGFVA 148 (301)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHH-----HTT--EEEEE
T ss_pred CCCEEEEEccCccccHHHHHHHHHHHHH-----HcCCCceEEe
Confidence 4578999999999999999999999995 8899988765
|
The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A. |
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.13 Score=58.29 Aligned_cols=57 Identities=11% Similarity=0.127 Sum_probs=44.2
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEecc
Q 005009 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEV 662 (719)
Q Consensus 601 ~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEV 662 (719)
.+.|++.|.+ .++++|..+.++-. ...+|-.+.|.+++++++++|++||+.+++|=.
T Consensus 169 l~~le~~I~~----~g~~~i~~v~~tlt-~N~~GGqpvslenlr~V~~la~~~GIplhLDgA 225 (467)
T TIGR02617 169 LEGLERGIEE----VGPNNVPYIVATIT-CNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSA 225 (467)
T ss_pred HHHHHHHHhh----cCCCCceeeeeeEE-EecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhH
Confidence 3667888874 34567888888866 454455566899999999999999999999953
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.42 Score=53.89 Aligned_cols=88 Identities=16% Similarity=0.123 Sum_probs=58.1
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccC--ccccc-ccc-CCC------ccee---ee
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG--VETTA-DLL-GCV------PDIA---CY 687 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG--~~~a~-e~~-gv~------PDIv---tl 687 (719)
+.++.-| +.=.|.+. +.+-+++|.++|++||+++|.||+...|--.| .+... +.. ++. +.++ +|
T Consensus 213 ~l~l~nP--~NPTG~v~-s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~Sf 289 (407)
T PLN02368 213 AMVIINP--GNPTGQCL-SEANLREILKFCYQERLVLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTV 289 (407)
T ss_pred EEEEECC--CCCCCccC-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcccHHHHHhhhcccccccceEEEEecC
Confidence 3566678 34456544 79999999999999999999999998763223 22111 110 111 2344 57
Q ss_pred hhccC--CCccchheeE---eCHHHHhhhc
Q 005009 688 GKLLT--GGVIPLAATL---ATNAVFDSFV 712 (719)
Q Consensus 688 gK~Lg--gG~~Plsavl---~~~~i~~~~~ 712 (719)
||.+. .| +=+|.++ +.+++++.+.
T Consensus 290 SK~~~~~~G-lRiGy~i~~~~~~~li~~~~ 318 (407)
T PLN02368 290 SKGYWGECG-QRGGYFEMTNIPPKTVEEIY 318 (407)
T ss_pred CcccccCCc-cceEEEEEeCCCHHHHHHHH
Confidence 99984 56 5777787 4777777654
|
|
| >PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.042 Score=64.86 Aligned_cols=45 Identities=22% Similarity=0.314 Sum_probs=38.4
Q ss_pred CCCCCCCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEccc
Q 005009 30 PLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPI 80 (719)
Q Consensus 30 ~~~~~~~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi 80 (719)
||.-.++|+.|-|+|. +|+|||++...|+..|. ++|+||+.+|=-
T Consensus 3 ~~~~~~~~~vi~ivG~-s~sGKTTlie~li~~L~-----~~G~rVavIKh~ 47 (597)
T PRK14491 3 PFTNPLSIPLLGFCAY-SGTGKTTLLEQLIPELN-----QRGLRLAVIKHA 47 (597)
T ss_pred cccCCCCccEEEEEcC-CCCCHHHHHHHHHHHHH-----hCCceEEEEEcC
Confidence 4444456889999997 99999999999999994 889999999943
|
|
| >COG3367 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.075 Score=57.19 Aligned_cols=37 Identities=11% Similarity=0.126 Sum_probs=33.5
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.+.+++.||+.-+||-+.+.-|-+++. .+|+++.+.-
T Consensus 148 a~~V~vvGTd~~vGKrTTa~~L~~~~~-----e~G~~a~fva 184 (339)
T COG3367 148 AKVVLVVGTDCAVGKRTTALELREAAR-----EEGIKAGFVA 184 (339)
T ss_pred CcEEEEeccccccchhHHHHHHHHHHH-----HhCCccceEe
Confidence 578999999999999999999999994 8899988765
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.22 Score=56.17 Aligned_cols=36 Identities=19% Similarity=0.191 Sum_probs=27.8
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..++|+|. +|||||++++-|+..+. . .+|.+|..+-
T Consensus 224 ~vi~lvGp-tGvGKTTtaaKLA~~~~---~-~~G~~V~Lit 259 (432)
T PRK12724 224 KVVFFVGP-TGSGKTTSIAKLAAKYF---L-HMGKSVSLYT 259 (432)
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHHH---H-hcCCeEEEec
Confidence 45888886 89999999999997652 1 5688887554
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.022 Score=65.36 Aligned_cols=72 Identities=14% Similarity=-0.040 Sum_probs=49.9
Q ss_pred ccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccC-C-Cccee--eehhccCCCccchheeEeCHHHHh
Q 005009 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG-C-VPDIA--CYGKLLTGGVIPLAATLATNAVFD 709 (719)
Q Consensus 634 G~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~g-v-~PDIv--tlgK~LggG~~Plsavl~~~~i~~ 709 (719)
|...+ +++++++|++||++|++|+.|+ +|-.|-....+.++ + ..|++ |++|+|.|-. .|.+++++++.+
T Consensus 232 ~~~~d----l~~i~eia~~~gA~L~VD~AH~-~Gligg~~~~~~~~~~~~~D~vtgT~hKaL~GP~--GG~I~~~~~l~~ 304 (493)
T PRK13580 232 PRRVN----FAKLREIADEVGAVLMVDMAHF-AGLVAGKVFTGDEDPVPHADIVTTTTHKTLRGPR--GGLVLAKKEYAD 304 (493)
T ss_pred CCCcC----HHHHHHHHHHcCCEEEEECchh-hceeccccchhhcCCCCCCcEEEeCChhhccCCC--eEEEEecHHHHH
Confidence 44555 9999999999999999999995 55555222111121 1 46876 6899995421 355888999888
Q ss_pred hhc
Q 005009 710 SFV 712 (719)
Q Consensus 710 ~~~ 712 (719)
.+.
T Consensus 305 ~L~ 307 (493)
T PRK13580 305 AVD 307 (493)
T ss_pred HHh
Confidence 773
|
|
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.22 Score=55.33 Aligned_cols=207 Identities=12% Similarity=0.083 Sum_probs=119.0
Q ss_pred CHHHHHHHHHhhhhccccc-CCCCCC-hHHHHHHHHHHhccCCC--CCCeEEEeCChHHHHHHHHHHHHHHhhccccccc
Q 005009 418 QIELARDMGYTAARFGHVM-FPENVY-EPALECAELLLQGVGKG--WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLV 493 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~-~~~~~~-~~~~~Lae~L~~~~~~~--~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~ 493 (719)
..-|.+|+++.+......+ ..++.+ +....|++++++..+.. ..+.|+.++.+.+|.-.|+-... ..|
T Consensus 46 P~fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~-----~~G--- 117 (420)
T KOG0257|consen 46 PKFVTEAAKNAAKEPSTNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLL-----NPG--- 117 (420)
T ss_pred cHHHHHHHHHHhccchhccccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHc-----CCC---
Confidence 3456667776666542211 122333 34556777777744321 13569989988898887776552 112
Q ss_pred cccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhccc
Q 005009 494 DFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIV 573 (719)
Q Consensus 494 ~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~ 573 (719)
..||.++-.|--......-+.+...+... .. ..|. +.-+ +|
T Consensus 118 -------------DeVii~eP~fd~Y~~~~~maG~tpv~v~~----------------~~--~~g~--~~s~-~~----- 158 (420)
T KOG0257|consen 118 -------------DEVIVFEPFFDCYIPQVVMAGGTPVFVPL----------------KP--KEGN--VSSS-DW----- 158 (420)
T ss_pred -------------CEEEEecCcchhhhhHHhhcCCcceeecc----------------cc--cccc--ccCc-cc-----
Confidence 47899988887755444333332222111 00 0000 0001 11
Q ss_pred ccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhc
Q 005009 574 EHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR 653 (719)
Q Consensus 574 ~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~ 653 (719)
..| .+.+|..+.+ ..=+-||.-|- .--|-+ .+.+-|++|.+||++|
T Consensus 159 ------~~D------------------~~~le~~~t~-------kTk~Ii~ntPh--NPtGkv-fsReeLe~ia~l~~k~ 204 (420)
T KOG0257|consen 159 ------TLD------------------PEELESKITE-------KTKAIILNTPH--NPTGKV-FSREELERIAELCKKH 204 (420)
T ss_pred ------cCC------------------hHHHHhhccC-------CccEEEEeCCC--CCcCcc-cCHHHHHHHHHHHHHC
Confidence 011 2456766652 23356666673 334544 4789999999999999
Q ss_pred CCcEEEeccccCccccCc---cccccccCCCcce-------eeehhccCC-CccchheeEeCHHHHhhh
Q 005009 654 KIPVIFDEVFTGFWRLGV---ETTADLLGCVPDI-------ACYGKLLTG-GVIPLAATLATNAVFDSF 711 (719)
Q Consensus 654 gilLI~DEVqTGfGRtG~---~~a~e~~gv~PDI-------vtlgK~Lgg-G~~Plsavl~~~~i~~~~ 711 (719)
|+++|.|||.--+=-.|. .+++ .|++ --+||..|- | .-+|-+++.+.++...
T Consensus 205 ~~lvisDevYe~~v~d~~~h~r~as-----lPgm~ertitvgS~gKtf~~TG-WrlGW~igp~~L~~~~ 267 (420)
T KOG0257|consen 205 GLLVISDEVYEWLVYDGNKHIRIAS-----LPGMYERTITVGSFGKTFGVTG-WRLGWAIGPKHLYSAL 267 (420)
T ss_pred CEEEEEhhHhHHHhhCCCcceeeec-----CCchhheEEEeccccceeeeee-eeeeeeechHHhhhhH
Confidence 999999999975433443 1222 2654 247998874 6 5777799987777543
|
|
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.35 Score=55.38 Aligned_cols=97 Identities=9% Similarity=0.049 Sum_probs=62.0
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCC-----cEEEeccccCcc----ccCcc
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI-----PVIFDEVFTGFW----RLGVE 672 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gi-----lLI~DEVqTGfG----RtG~~ 672 (719)
+.|++.|.+ ...+.+.|+.--- ...-|.+-| +++|.++|++||+ .|-+|=...|+- +.-..
T Consensus 216 ~aL~~aI~~-----d~~~P~iVvataG-TT~~GAiDp----i~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~~ 285 (470)
T PLN02263 216 ADFKAKLLA-----NKDKPAIINVNIG-TTVKGAVDD----LDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAPK 285 (470)
T ss_pred HHHHHHHHh-----CCCCcEEEEEEec-CCCCcCCCC----HHHHHHHHHHcCCccCCeeEEEeccchhhHhhhcccccc
Confidence 567777763 2234455544433 445678888 9999999999997 999999987751 11111
Q ss_pred ccccccCCCcceeee--hhccCCCccchheeEeCHHHHhhhc
Q 005009 673 TTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 673 ~a~e~~gv~PDIvtl--gK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
|.+ -...|=+++ =|-++.- +|.|+++.+++..+.+.
T Consensus 286 ~df---~~~vDSIsvD~HK~l~~P-~~cgvll~R~~~~~~~~ 323 (470)
T PLN02263 286 VTF---KKPIGSVSVSGHKFVGCP-MPCGVQITRMEHINVLS 323 (470)
T ss_pred cCC---CcCccEEEECCccccCCC-cCEEEEEEehhhHhhhc
Confidence 111 123565543 3666666 68899999987765553
|
|
| >PRK13234 nifH nitrogenase reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.057 Score=58.13 Aligned_cols=37 Identities=11% Similarity=0.263 Sum_probs=31.4
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
+|+.|-|+ --.|||||+++.-|..+|. ++|+||..+=
T Consensus 3 ~~~~iai~-~KGGvGKTt~~~nLa~~la-----~~g~kVLliD 39 (295)
T PRK13234 3 KLRQIAFY-GKGGIGKSTTSQNTLAALV-----EMGQKILIVG 39 (295)
T ss_pred cceEEEEE-CCCCccHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 46677776 6799999999999999994 8899998774
|
|
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.94 Score=49.78 Aligned_cols=35 Identities=17% Similarity=0.231 Sum_probs=30.7
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..+-|+|. .|+|||+++..|+..|. ++|.+|+.+.
T Consensus 57 ~~igi~G~-~GaGKSTl~~~l~~~l~-----~~g~~v~vi~ 91 (332)
T PRK09435 57 LRIGITGV-PGVGKSTFIEALGMHLI-----EQGHKVAVLA 91 (332)
T ss_pred EEEEEECC-CCCCHHHHHHHHHHHHH-----HCCCeEEEEE
Confidence 36889998 99999999999999994 6799998877
|
|
| >COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.017 Score=56.73 Aligned_cols=41 Identities=15% Similarity=0.101 Sum_probs=36.4
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEccccc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQT 82 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~ 82 (719)
||+.|.|+|. +|+|||++...|++.|+ ++|++|+..|=-..
T Consensus 1 m~~Il~ivG~-k~SGKTTLie~lv~~L~-----~~G~rVa~iKH~hh 41 (161)
T COG1763 1 MMKILGIVGY-KNSGKTTLIEKLVRKLK-----ARGYRVATVKHAHH 41 (161)
T ss_pred CCcEEEEEec-CCCChhhHHHHHHHHHH-----hCCcEEEEEEecCC
Confidence 5788999999 89999999999999994 89999999995333
|
|
| >PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.024 Score=54.37 Aligned_cols=40 Identities=20% Similarity=0.283 Sum_probs=32.2
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccC
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTG 83 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g 83 (719)
|.++|.|. +++|||+++..|++.|. ++|++|+++|=...|
T Consensus 1 pvv~VvG~-~~sGKTTl~~~Li~~l~-----~~g~~v~~ik~~~~g 40 (140)
T PF03205_consen 1 PVVQVVGP-KNSGKTTLIRKLINELK-----RRGYRVAVIKHTDHG 40 (140)
T ss_dssp -EEEEEES-TTSSHHHHHHHHHHHHH-----HTT--EEEEEE-STT
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHHh-----HcCCceEEEEEccCC
Confidence 57899997 79999999999999995 789999999965553
|
|
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.53 Score=52.48 Aligned_cols=82 Identities=17% Similarity=0.068 Sum_probs=51.3
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC-Ccceee--ehhccCCCc
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIAC--YGKLLTGGV 695 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv-~PDIvt--lgK~LggG~ 695 (719)
.+.+|+.--- ....|.+-+ +++|.++|+++++.|-+|=...|+.-.-..+-.-..|+ ..|=++ .-|-++--
T Consensus 194 ~p~~vvat~G-tt~~Ga~D~----l~~i~~i~~~~~~wlHVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P- 267 (373)
T PF00282_consen 194 TPFAVVATAG-TTNTGAIDP----LEEIADICEKYNIWLHVDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVP- 267 (373)
T ss_dssp EEEEEEEEBS--TTTSBB-S----HHHHHHHHHHCT-EEEEEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-S-
T ss_pred cceeeeccCC-CcccccccC----HHHHhhhccccceeeeecccccccccccccccccccccccccccccchhhhhcCC-
Confidence 3445554433 445677766 99999999999999999998877322222222223344 467665 46777766
Q ss_pred cchheeEeCHH
Q 005009 696 IPLAATLATNA 706 (719)
Q Consensus 696 ~Plsavl~~~~ 706 (719)
++.|+++++++
T Consensus 268 ~~~~~~l~r~~ 278 (373)
T PF00282_consen 268 YGCGVLLVRDK 278 (373)
T ss_dssp SS-EEEEESSG
T ss_pred ccceeEEeecc
Confidence 58888988884
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.19 Score=60.22 Aligned_cols=62 Identities=21% Similarity=0.273 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHhccCCCCCCeEEEeCChHH-HHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCcc
Q 005009 443 EPALECAELLLQGVGKGWASRAYFSDNGST-AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTL 521 (719)
Q Consensus 443 ~~~~~Lae~L~~~~~~~~~~rv~f~~SGsE-A~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~ 521 (719)
.+..+..+..++.++ .++.||..+||. +|.+++..+ ..+.+.|.++...|=+..
T Consensus 195 G~i~eAe~~aA~~fg---Ad~tyfvvNGTS~~n~av~~a~----------------------~~~Gd~VLvdRN~HKSv~ 249 (713)
T PRK15399 195 GPHLEAEEYIARTFG---AEQSYIVTNGTSTSNKIVGMYA----------------------APAGSTLLIDRNCHKSLA 249 (713)
T ss_pred hHHHHHHHHHHHHhC---CCcEEEEeCChHHHHHHHHHHh----------------------cCCCCEEEeecccHHHHH
Confidence 344555555566777 478888888854 455544444 223467889999999999
Q ss_pred ccccccCC
Q 005009 522 GAMEAQAP 529 (719)
Q Consensus 522 galslt~~ 529 (719)
.++-++|.
T Consensus 250 ~aLilsga 257 (713)
T PRK15399 250 HLLMMSDV 257 (713)
T ss_pred HHHHHcCC
Confidence 99988874
|
|
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.41 Score=53.44 Aligned_cols=80 Identities=21% Similarity=0.211 Sum_probs=48.0
Q ss_pred CcEEEEeCCCCCCCCCCCCchhHHHHhhc----CCCEEEEEcCC--CChHHHHHHHHHHHHhCCCcEEEEEEccCC----
Q 005009 221 EILCIVETAGGVASPGPSGSLQCDLYRPF----RLPGILVGDGR--LGGISGTISAYESLKLRGYDVVAVVFEDHG---- 290 (719)
Q Consensus 221 ~d~vivEGagG~~~p~~~~~~~~dla~~l----~~pvilV~~~~--~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~---- 290 (719)
+|+|+|.++| .++.+ .....++...+ .+.+-||.+.. .-.+-+++..+ +-+++.|+||-+.+
T Consensus 282 ~d~ILVDTaG--rs~~D-~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f-----~~~~i~~~I~TKlDET~s 353 (407)
T COG1419 282 CDVILVDTAG--RSQYD-KEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQF-----SLFPIDGLIFTKLDETTS 353 (407)
T ss_pred CCEEEEeCCC--CCccC-HHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHh-----ccCCcceeEEEcccccCc
Confidence 8999999999 45543 23334444333 45677887733 22333333322 45789999999983
Q ss_pred CCCHHHHHHhhcCCCcEEec
Q 005009 291 LVNEVPLMSYLRNRVPVLVL 310 (719)
Q Consensus 291 ~~~~~~l~~~~~~~~pvlgl 310 (719)
..+.-.+.... +.||.-+
T Consensus 354 ~G~~~s~~~e~--~~PV~Yv 371 (407)
T COG1419 354 LGNLFSLMYET--RLPVSYV 371 (407)
T ss_pred hhHHHHHHHHh--CCCeEEE
Confidence 23444444444 8898654
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.81 Score=53.29 Aligned_cols=78 Identities=14% Similarity=0.236 Sum_probs=52.9
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhc--CCcEEEeccccCccccCccccccccCCCcc-ee---eehhccC-C
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNR--KIPVIFDEVFTGFWRLGVETTADLLGCVPD-IA---CYGKLLT-G 693 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~--gilLI~DEVqTGfGRtG~~~a~e~~gv~PD-Iv---tlgK~Lg-g 693 (719)
+.+|+-|- .=.|.+ .+.+-+++|.++|++| ++++|.|||..-|- ..+-. .....|| ++ .+||.+| .
T Consensus 243 ai~l~nP~--NPTG~v-ls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~--~~~~s--l~~~~~~~vI~v~SfSK~fg~~ 315 (521)
T TIGR03801 243 ALFVVNPS--NPPSVA-MSDESIEKIVDIVANDRPDLMILTDDVYGTFV--DDFRS--LFAELPYNTIGVYSFSKYFGAT 315 (521)
T ss_pred EEEEeCCC--CCCCCC-CCHHHHHHHHHHHHhcCCCeEEEECCCchhhc--ccccc--hhhhCCCCEEEEEcchhhccCc
Confidence 44556784 444544 4789999999999987 99999999997663 22111 1112354 22 6999997 5
Q ss_pred CccchheeEeCHH
Q 005009 694 GVIPLAATLATNA 706 (719)
Q Consensus 694 G~~Plsavl~~~~ 706 (719)
| +=+|.+++.++
T Consensus 316 G-~RlG~i~~~~~ 327 (521)
T TIGR03801 316 G-WRLGTIALHKD 327 (521)
T ss_pred h-hhhhhhhcCch
Confidence 7 67888888754
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.17 Score=54.13 Aligned_cols=37 Identities=24% Similarity=0.329 Sum_probs=30.7
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCC-C-CceeEEc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSA-N-KKFVYLK 78 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~-g-~~v~~~K 78 (719)
....+.|.|. ||||||++++.|+..+. .+ | ++|+++.
T Consensus 193 ~~~vi~~vGp-tGvGKTTt~~kLa~~~~-----~~~g~~~V~li~ 231 (282)
T TIGR03499 193 QGGVIALVGP-TGVGKTTTLAKLAARFV-----LEHGNKKVALIT 231 (282)
T ss_pred CCeEEEEECC-CCCCHHHHHHHHHHHHH-----HHcCCCeEEEEE
Confidence 3457889998 89999999999999984 43 4 8898887
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.58 E-value=1.5 Score=48.82 Aligned_cols=87 Identities=13% Similarity=0.109 Sum_probs=55.1
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHh-----cCCcEEEeccccCccccCcccc--cc-ccCCCcce--e---ee
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQN-----RKIPVIFDEVFTGFWRLGVETT--AD-LLGCVPDI--A---CY 687 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k-----~gilLI~DEVqTGfGRtG~~~a--~e-~~gv~PDI--v---tl 687 (719)
.-++.-| +.=.|.. .+.+-+++|.++|++ |++++|.||+...|--.+.... +. ..+..+.+ + .+
T Consensus 149 ~~~~~~P--~NPTG~~-~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~ 225 (388)
T PRK08637 149 IVILNFP--NNPTGYT-PTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGA 225 (388)
T ss_pred EEEEeCC--CCCCCCC-CCHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCccchhhHHHhhcccccceEEEeccc
Confidence 3444456 4555654 478889999998875 9999999999987743443210 11 11223343 2 58
Q ss_pred hhccC-CCccchheeEeC------HHHHhhh
Q 005009 688 GKLLT-GGVIPLAATLAT------NAVFDSF 711 (719)
Q Consensus 688 gK~Lg-gG~~Plsavl~~------~~i~~~~ 711 (719)
+|..+ .| +-+|.+++. +++.+.+
T Consensus 226 SK~~~~pG-lRlG~~~~~~~~~~~~~l~~~~ 255 (388)
T PRK08637 226 TKEEFVWG-FRVGFITFGTKAGSSQTVKEAL 255 (388)
T ss_pred cccCCCcc-cceEEEEEccccCCcHHHHHHH
Confidence 99865 46 688888753 5666554
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.63 Score=54.24 Aligned_cols=78 Identities=14% Similarity=0.239 Sum_probs=52.8
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHh--cCCcEEEeccccCccccCccccccccCCCcc-ee---eehhccC-C
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQN--RKIPVIFDEVFTGFWRLGVETTADLLGCVPD-IA---CYGKLLT-G 693 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k--~gilLI~DEVqTGfGRtG~~~a~e~~gv~PD-Iv---tlgK~Lg-g 693 (719)
+.+|+-|- .=.|.+. +++-+++|.++|++ +|+++|.|||..-|. +.+.. .....|| ++ +|||..| .
T Consensus 244 ai~l~nP~--NPTG~v~-s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~--~~~~s--~~~~~~~~~I~v~SfSK~f~mt 316 (527)
T PRK09275 244 ALFLVNPS--NPPSVAM-SDESLEKIADIVNEKRPDLMIITDDVYGTFV--DDFRS--LFAVLPYNTILVYSFSKYFGAT 316 (527)
T ss_pred EEEEeCCc--CCcCCCC-CHHHHHHHHHHHHhcCCCcEEEECCCChhhc--ccccC--HHHhCCCCEEEEeehhhhccCc
Confidence 44456783 4456544 79999999999965 599999999998763 22111 1112343 22 6899997 5
Q ss_pred CccchheeEeCHH
Q 005009 694 GVIPLAATLATNA 706 (719)
Q Consensus 694 G~~Plsavl~~~~ 706 (719)
| +=+|.+++.++
T Consensus 317 G-~RlG~i~~~~~ 328 (527)
T PRK09275 317 G-WRLGVIALHED 328 (527)
T ss_pred H-hHHhhhhcCch
Confidence 7 67888888875
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.21 Score=54.75 Aligned_cols=83 Identities=22% Similarity=0.342 Sum_probs=51.7
Q ss_pred EEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee---eehhccC-CCccc
Q 005009 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIP 697 (719)
Q Consensus 622 AvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv---tlgK~Lg-gG~~P 697 (719)
.+|.-| +.-.|.+.+ .+.+++|.+.|+ ++++|+||++.-|.. .. ...+.....|.++ +|+|.+| .| +=
T Consensus 151 i~i~nP--~NPTG~~~~-~~~l~~l~~~~~--~~~vivDeay~~~~~-~~-s~~~~~~~~~~~iv~~S~SK~~~l~G-lR 222 (354)
T PRK04635 151 VFICNP--NNPTGTVID-RADIEQLIEMTP--DAIVVVDEAYIEFCP-EY-SVADLLASYPNLVVLRTLSKAFALAG-AR 222 (354)
T ss_pred EEEeCC--CCCCCccCC-HHHHHHHHHhCC--CcEEEEeCchHhhcc-Cc-chHHHHhhCCCEEEEechHHHhhhhH-HH
Confidence 344555 566677765 444555555544 599999999976631 11 1111111123433 7999997 66 56
Q ss_pred hheeEeCHHHHhhhc
Q 005009 698 LAATLATNAVFDSFV 712 (719)
Q Consensus 698 lsavl~~~~i~~~~~ 712 (719)
+|.+++++++.+.+.
T Consensus 223 lG~~i~~~~~~~~l~ 237 (354)
T PRK04635 223 CGFTLANEELIEILM 237 (354)
T ss_pred HhhhhCCHHHHHHHH
Confidence 788999999988764
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.52 E-value=1.6 Score=50.13 Aligned_cols=221 Identities=17% Similarity=0.219 Sum_probs=131.5
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccc-----cCCCCCChHHHHHHHHHHhccCCC-CCCeEEEeCChHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHV-----MFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTA 473 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~-----~~~~~~~~~~~~Lae~L~~~~~~~-~~~rv~f~~SGsEA 473 (719)
..+||..|+-.. .+--+..+.+++.+.+...... .......+....+++.+...-|-. .-+.++.+++..+|
T Consensus 90 ~~i~f~~g~p~~--~~fp~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~a 167 (459)
T COG1167 90 SVIDFAGGLPDP--SLFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQA 167 (459)
T ss_pred ceecCCCCCCCc--ccCCHHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHHHH
Confidence 677887765221 2221335666655544322111 111223445557777776322211 12479999998899
Q ss_pred HHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcc
Q 005009 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (719)
Q Consensus 474 ~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~ 553 (719)
.+...++.. ..| ..|+.=+-+|||.... +...|
T Consensus 168 l~l~~~~l~-----~pG----------------d~v~vE~PtY~~~~~~-~~~~g------------------------- 200 (459)
T COG1167 168 LDLLLRLLL-----DPG----------------DTVLVEDPTYPGALQA-LEALG------------------------- 200 (459)
T ss_pred HHHHHHHhC-----CCC----------------CEEEEcCCCcHHHHHH-HHHcC-------------------------
Confidence 987777661 122 3677777788883221 11111
Q ss_pred cccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 005009 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (719)
Q Consensus 554 ~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~g 633 (719)
...+++|.. + .+-+ .+.+++.+.+ .++-++.+-|-.|.=.
T Consensus 201 -----~~~~~vp~d--------------~------~G~~--------~e~le~~~~~-------~~~k~~y~~P~~qNPt 240 (459)
T COG1167 201 -----ARVIPVPVD--------------E------DGID--------PEALEEALAQ-------WKPKAVYVTPTFQNPT 240 (459)
T ss_pred -----CcEEecCCC--------------C------CCCC--------HHHHHHHHhh-------cCCcEEEECCCCCCCC
Confidence 112233310 0 0111 3567777763 3788999999867777
Q ss_pred ccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc-cccccCCCcc----eeeehhccCCCccchheeEeCHHHH
Q 005009 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPD----IACYGKLLTGGVIPLAATLATNAVF 708 (719)
Q Consensus 634 G~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~-a~e~~gv~PD----IvtlgK~LggG~~Plsavl~~~~i~ 708 (719)
|... +.+=-++|.++|++||+.+|=|++..=|--.+..- ....+. .++ +-+|||.|.=| +=+|.+++.++++
T Consensus 241 G~tm-s~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld-~~~rViy~gSFSK~l~Pg-lRlG~vv~p~~~~ 317 (459)
T COG1167 241 GVTM-SLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALD-APGRVIYLGSFSKTLAPG-LRLGYVVAPPELI 317 (459)
T ss_pred CCcc-CHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhC-CCCCEEEEeeehhhcccc-cceeeeeCCHHHH
Confidence 8765 67888999999999999999999996552222211 111111 134 23899999988 6899999999988
Q ss_pred hhhc
Q 005009 709 DSFV 712 (719)
Q Consensus 709 ~~~~ 712 (719)
+.+.
T Consensus 318 ~~~~ 321 (459)
T COG1167 318 EKLL 321 (459)
T ss_pred HHHH
Confidence 8764
|
|
| >COG2403 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.046 Score=59.75 Aligned_cols=40 Identities=18% Similarity=0.306 Sum_probs=36.6
Q ss_pred CCCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 34 PLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 34 ~~~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.+..|+|-|+||.|++|||.||.-++|.| + ++|+||+...
T Consensus 123 ~~ekPviaV~atrtg~GKsaVS~~v~r~l----~-ergyrv~vVr 162 (449)
T COG2403 123 KLEKPVIAVTATRTGVGKSAVSRYVARLL----R-ERGYRVCVVR 162 (449)
T ss_pred hhcCceEEEEEeccccchhHHHHHHHHHH----H-HcCCceEEEe
Confidence 35689999999999999999999999999 4 8999999887
|
|
| >KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.89 Score=50.35 Aligned_cols=85 Identities=18% Similarity=0.191 Sum_probs=49.0
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCC-CEEEEEcCCCChHHHHHHHH-HHHHhCCCcEEEEEEccCC--C--CC
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRL-PGILVGDGRLGGISGTISAY-ESLKLRGYDVVAVVFEDHG--L--VN 293 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~-pvilV~~~~~g~i~~~~~~~-~~l~~~~~~v~gvi~N~~~--~--~~ 293 (719)
++|++||.++|-..---.--.-+.++.+..+- -||+|.|...|- +..+. ..++ .-++|-+||+.+.. . ..
T Consensus 183 ~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQ---aae~Qa~aFk-~~vdvg~vIlTKlDGhakGGg 258 (483)
T KOG0780|consen 183 NFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQ---AAEAQARAFK-ETVDVGAVILTKLDGHAKGGG 258 (483)
T ss_pred CCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccH---hHHHHHHHHH-HhhccceEEEEecccCCCCCc
Confidence 59999999988322111001245677777762 289999976653 22221 2222 34789999999971 1 11
Q ss_pred HHHHHHhhcCCCcEEec
Q 005009 294 EVPLMSYLRNRVPVLVL 310 (719)
Q Consensus 294 ~~~l~~~~~~~~pvlgl 310 (719)
..-....+ +.||..|
T Consensus 259 AlSaVaaT--ksPIiFI 273 (483)
T KOG0780|consen 259 ALSAVAAT--KSPIIFI 273 (483)
T ss_pred eeeehhhh--CCCEEEE
Confidence 11123344 7887664
|
|
| >PRK13886 conjugal transfer protein TraL; Provisional | Back alignment and domain information |
|---|
Probab=94.34 E-value=2 Score=45.04 Aligned_cols=38 Identities=13% Similarity=0.218 Sum_probs=32.4
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
|++.++|.+.-.|||||++++.|+.++. ++|.+|..+-
T Consensus 1 m~~i~~i~~~KGGvGKSt~a~~la~~l~-----~~g~~vl~iD 38 (241)
T PRK13886 1 MAKIHMVLQGKGGVGKSFIAATIAQYKA-----SKGQKPLCID 38 (241)
T ss_pred CCeEEEEecCCCCCcHHHHHHHHHHHHH-----hCCCCEEEEE
Confidence 4567899999999999999999999994 7788886654
|
|
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.27 E-value=1.6 Score=47.77 Aligned_cols=84 Identities=14% Similarity=0.116 Sum_probs=51.6
Q ss_pred cCcEEEEeCCCCCCCCCC---CCchhHHHHhhcCCC-----EEEEEcCCCC--hHHHHHHHHHHHHhCCCcEEEEEEccC
Q 005009 220 MEILCIVETAGGVASPGP---SGSLQCDLYRPFRLP-----GILVGDGRLG--GISGTISAYESLKLRGYDVVAVVFEDH 289 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~---~~~~~~dla~~l~~p-----vilV~~~~~g--~i~~~~~~~~~l~~~~~~v~gvi~N~~ 289 (719)
++|+|||.+||=+..-.+ +=.-..++++.. .| ++||.|.-.| +++|+-.--++ ..|-|+|+-+.
T Consensus 221 ~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~-~~~ap~e~llvlDAttGqnal~QAk~F~ea-----v~l~GiIlTKl 294 (340)
T COG0552 221 GIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKD-DPDAPHEILLVLDATTGQNALSQAKIFNEA-----VGLDGIILTKL 294 (340)
T ss_pred CCCEEEEeCcccccCchhHHHHHHHHHHHhccc-cCCCCceEEEEEEcccChhHHHHHHHHHHh-----cCCceEEEEec
Confidence 599999999997665432 001223333333 34 8888887766 45555443332 45889999998
Q ss_pred C-C---CCHHHHHHhhcCCCcEEecC
Q 005009 290 G-L---VNEVPLMSYLRNRVPVLVLP 311 (719)
Q Consensus 290 ~-~---~~~~~l~~~~~~~~pvlglP 311 (719)
. . .-.-.|...+ ++||+-|-
T Consensus 295 DgtAKGG~il~I~~~l--~~PI~fiG 318 (340)
T COG0552 295 DGTAKGGIILSIAYEL--GIPIKFIG 318 (340)
T ss_pred ccCCCcceeeeHHHHh--CCCEEEEe
Confidence 2 1 2244456666 89986643
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.83 Score=52.60 Aligned_cols=34 Identities=24% Similarity=0.349 Sum_probs=26.8
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCC-CceeE
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSAN-KKFVY 76 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g-~~v~~ 76 (719)
..+.+.|. +||||||.++.|+..+. . ++| ++|+.
T Consensus 257 ~Vi~LvGp-nGvGKTTTiaKLA~~~~---~-~~G~~kV~L 291 (484)
T PRK06995 257 GVFALMGP-TGVGKTTTTAKLAARCV---M-RHGASKVAL 291 (484)
T ss_pred cEEEEECC-CCccHHHHHHHHHHHHH---H-hcCCCeEEE
Confidence 57899998 89999999999998873 2 445 46653
|
|
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=94.22 E-value=1.2 Score=47.59 Aligned_cols=37 Identities=22% Similarity=0.296 Sum_probs=30.1
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..+.+.+.|. +|+|||++...|+..+. .+|.+|++.-
T Consensus 74 ~~~~i~~~G~-~g~GKTtl~~~l~~~l~-----~~~~~v~~i~ 110 (270)
T PRK06731 74 EVQTIALIGP-TGVGKTTTLAKMAWQFH-----GKKKTVGFIT 110 (270)
T ss_pred CCCEEEEECC-CCCcHHHHHHHHHHHHH-----HcCCeEEEEe
Confidence 3468899998 99999999999999884 5577777664
|
|
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.94 Score=43.76 Aligned_cols=61 Identities=20% Similarity=0.026 Sum_probs=46.7
Q ss_pred hhHHHHhhcCCCEEEEEc-CCCC-hHHHHHHHHHHHHhCCCcEEEEEEccCCCCCHHHHHHhhc
Q 005009 241 LQCDLYRPFRLPGILVGD-GRLG-GISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLR 302 (719)
Q Consensus 241 ~~~dla~~l~~pvilV~~-~~~g-~i~~~~~~~~~l~~~~~~v~gvi~N~~~~~~~~~l~~~~~ 302 (719)
..-.+++.++.|||=|+. .++- .-...-.+.+.|+..|++=+ +.++-+.....+.|++|++
T Consensus 80 ~pP~fa~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~i-f~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 80 FPPGFASMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEI-FEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred CCchhhcccCCCEEEEEECccCccchhhHHHHHHHHHHcCCCCe-EEEECCCCcCHHHHHHHHh
Confidence 345677888999998887 5555 45666678888999998744 7777777888899999874
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >cd03114 ArgK-like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.32 Score=47.04 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=27.7
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 40 ~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
+.+.|. .|+|||+++..|...+. ++|.++..+.
T Consensus 2 i~~~G~-~GsGKTt~~~~l~~~~~-----~~g~~v~ii~ 34 (148)
T cd03114 2 IGITGV-PGAGKSTLIDALITALR-----ARGKRVAVLA 34 (148)
T ss_pred EEEECC-CCCcHHHHHHHHHHHHH-----HCCCEEEEEE
Confidence 566776 89999999999999994 7788887776
|
The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems. |
| >cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.075 Score=45.61 Aligned_cols=33 Identities=18% Similarity=0.380 Sum_probs=29.8
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 40 ~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
++++|.. |+|||+++..|++.|. +.|++|..++
T Consensus 2 ~~~~g~~-G~Gktt~~~~l~~~l~-----~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKG-GVGKTTLAANLAAALA-----KRGKRVLLID 34 (99)
T ss_pred EEEECCC-CCCHHHHHHHHHHHHH-----HCCCeEEEEC
Confidence 5788887 9999999999999994 6799999998
|
Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. |
| >KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.16 Score=55.46 Aligned_cols=37 Identities=14% Similarity=0.256 Sum_probs=31.6
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.-|+++|.|. |++|||++|.-||..+. +.|++..|.-
T Consensus 102 ~GPrv~vVGp-~d~GKsTl~r~L~nyav-----k~gr~Plfv~ 138 (415)
T KOG2749|consen 102 YGPRVMVVGP-TDVGKSTLCRILLNYAV-----KQGRRPLFVE 138 (415)
T ss_pred cCCEEEEECC-CccchHHHHHHHHHHHH-----HcCCcceEEE
Confidence 3578999997 99999999999999995 6688877765
|
|
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.39 Score=57.71 Aligned_cols=66 Identities=18% Similarity=0.136 Sum_probs=41.6
Q ss_pred EEEEEEccccccCCccccCCHHHHHHHHHH-HHhcCCcEEEeccccCccccCcc---ccccccCCCcc----eeee--hh
Q 005009 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKE-CQNRKIPVIFDEVFTGFWRLGVE---TTADLLGCVPD----IACY--GK 689 (719)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fl~~Lr~L-c~k~gilLI~DEVqTGfGRtG~~---~a~e~~gv~PD----Ivtl--gK 689 (719)
-++||.-|- -.|+..- ++.+.++ |++++ .|+|||.+-|.-+...+ +.-......|| ++|- =|
T Consensus 284 k~vvit~pT---YdG~~yd----i~~I~~~~~h~~~-~llvDEAhgah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHK 355 (720)
T PRK13578 284 RLAVIQLGT---YDGTIYN----ARQVVDKIGHLCD-YILFDSAWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHK 355 (720)
T ss_pred eEEEEECCC---Ccceeec----HHHHHHHhhccCC-cEEEeCcchhhhccCcccccCChhhhhcCCCCCCeEEEEChhh
Confidence 456766664 3566666 7888888 78888 99999999775454543 21122334567 6653 35
Q ss_pred ccCC
Q 005009 690 LLTG 693 (719)
Q Consensus 690 ~Lgg 693 (719)
-|++
T Consensus 356 tL~a 359 (720)
T PRK13578 356 QQAG 359 (720)
T ss_pred cchh
Confidence 5543
|
|
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.43 Score=52.82 Aligned_cols=64 Identities=13% Similarity=-0.079 Sum_probs=39.2
Q ss_pred CHHHHHHHHHhhhhcc-cccCCCCCChHHHHHHHHHHhccCCCCCCeEEEe-CChHHHHHHHHHHH
Q 005009 418 QIELARDMGYTAARFG-HVMFPENVYEPALECAELLLQGVGKGWASRAYFS-DNGSTAIEIALKMA 481 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~-~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~-~SGsEA~E~AlKlA 481 (719)
+|+|.+|+..+..... .........+...+.-++|.++++-..-..|+|+ .||+.|+|+++.-.
T Consensus 15 ~~~v~~a~~~~~~~~~~~~hr~~~f~~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~l 80 (361)
T TIGR01366 15 RLEQLQALTTTAASLFGTSHRQAPVKNLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFGL 80 (361)
T ss_pred CHHHHHHHHhcCccccccCcCChHHHHHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHhc
Confidence 7888888876532222 1111112245556667777777763212367775 78999999999655
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.38 Score=57.68 Aligned_cols=145 Identities=16% Similarity=0.211 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEeCChHH-HHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccc
Q 005009 444 PALECAELLLQGVGKGWASRAYFSDNGST-AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLG 522 (719)
Q Consensus 444 ~~~~Lae~L~~~~~~~~~~rv~f~~SGsE-A~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~g 522 (719)
+..+..+..++.++ .++.||...||. +|.+++..+ ..+.+.|.++...|=+...
T Consensus 196 ~i~eAe~~AA~~fg---Ad~tyfvvNGTS~~n~av~~a~----------------------~~~Gd~VLvdRN~HKSv~h 250 (714)
T PRK15400 196 PHKEAEEYIARVFN---ADRSYMVTNGTSTANKIVGMYS----------------------APAGSTVLIDRNCHKSLTH 250 (714)
T ss_pred HHHHHHHHHHHHhC---CCcEEEEeCchHHHHHHHHHHh----------------------cCCCCEEEeecccHHHHHH
Confidence 44455555556677 478888888855 444444433 2234678899999999999
Q ss_pred cccccCCC-CCCCCCCCCCccCCCcccCCCcccccCcceeecCc-chhhhcccccccccccCccchhhcccCchhHHHHH
Q 005009 523 AMEAQAPS-PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP-EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (719)
Q Consensus 523 alslt~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P-~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~ 600 (719)
++-++|.. .|-.+ -+..+|.. -++| .++ .
T Consensus 251 aLilsga~PVYl~P----~rn~~Gi~--------------g~I~~~~~----------------------------~--- 281 (714)
T PRK15400 251 LMMMSDVTPIYFRP----TRNAYGIL--------------GGIPQSEF----------------------------Q--- 281 (714)
T ss_pred HHHHcCCeEEEecc----cccccCCc--------------cCCCcccc----------------------------C---
Confidence 99888742 12111 00000100 0011 000 0
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc
Q 005009 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET 673 (719)
Q Consensus 601 ~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~ 673 (719)
.+.+++.|++... .....++||.-|- -.|+..- ++.+.++|+.++ ++|||.+-|.-+....+
T Consensus 282 ~e~i~~~i~~~p~--ak~p~~~vit~pT---YdG~~yd----~~~I~~~~~~~~--ilvDEAwgah~~F~p~~ 343 (714)
T PRK15400 282 HATIAKRVKETPN--ATWPVHAVITNST---YDGLLYN----TDFIKKTLDVKS--IHFDSAWVPYTNFSPIY 343 (714)
T ss_pred HHHHHHHHHhCcc--ccCccEEEEECCC---CccEecC----HHHHHHHhCCCC--EEEEccchhhhccCccc
Confidence 2567777765310 0112358887774 3466666 789999999888 68999997654444433
|
|
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.37 Score=50.88 Aligned_cols=51 Identities=22% Similarity=0.313 Sum_probs=37.0
Q ss_pred hHHHHHHHHhcccCCCCCCCCCCCCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 12 HHRRILLRLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..+.+|-+++.+.. ....+=|||+ .|+|||+++-.|.+.|. ++|++|+.+-
T Consensus 14 ~~~~ll~~l~~~~g----------~a~~iGiTG~-PGaGKSTli~~l~~~~~-----~~g~~VaVlA 64 (266)
T PF03308_consen 14 EARELLKRLYPHTG----------RAHVIGITGP-PGAGKSTLIDALIRELR-----ERGKRVAVLA 64 (266)
T ss_dssp HHHHHHHHHGGGTT-----------SEEEEEEE--TTSSHHHHHHHHHHHHH-----HTT--EEEEE
T ss_pred HHHHHHHHHHhhcC----------CceEEEeeCC-CCCcHHHHHHHHHHHHh-----hcCCceEEEE
Confidence 55667777775531 1236889999 89999999999999995 7799988775
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.75 Score=52.80 Aligned_cols=92 Identities=15% Similarity=0.087 Sum_probs=54.5
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccc--c-cc
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA--D-LL 678 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~--e-~~ 678 (719)
+.+++.+++.. ..+ +|+.=-. .-.-|.+-+ +++|.++|+++|+.|.+|=...||=. .+.-. . -+
T Consensus 196 ~~l~~~i~~~t---~~g---~vV~~aG-tT~~G~iDd----i~~ia~ia~~~~i~lHVDAA~GG~~~--pf~~~~~~~~f 262 (460)
T COG0076 196 DALEEAIDENT---IGG---VVVGTAG-TTDTGSIDD----IEELADIAEEYGIWLHVDAAFGGFLL--PFLEPDGRWDF 262 (460)
T ss_pred HHHHHHHHhhc---cCc---eEEEEec-CCCCCccCC----HHHHHHHHHHcCCcEEEEccccceee--cccCccchhhc
Confidence 56777777531 111 2222221 233455555 99999999999999999999987622 11111 1 13
Q ss_pred CC-Ccceeee-hhccCCCccchheeEeCHH
Q 005009 679 GC-VPDIACY-GKLLTGGVIPLAATLATNA 706 (719)
Q Consensus 679 gv-~PDIvtl-gK~LggG~~Plsavl~~~~ 706 (719)
++ ..|-||+ +--+|.-.+|.|+++.+++
T Consensus 263 ~l~~vdSIt~d~HK~g~aP~~~G~il~rd~ 292 (460)
T COG0076 263 GLEGVDSITVDGHKYGLAPIGCGVVLFRDE 292 (460)
T ss_pred CCCCceEEEECcccccCCCCCceEEEEECH
Confidence 44 3454443 4445555567778888887
|
|
| >PRK10463 hydrogenase nickel incorporation protein HypB; Provisional | Back alignment and domain information |
|---|
Probab=93.30 E-value=1.7 Score=46.89 Aligned_cols=33 Identities=12% Similarity=0.108 Sum_probs=25.2
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.+-|+|. .|+|||++...|++.|. ...+++.+.
T Consensus 106 ~v~l~G~-pGsGKTTLl~~l~~~l~------~~~~~~VI~ 138 (290)
T PRK10463 106 VLNLVSS-PGSGKTTLLTETLMRLK------DSVPCAVIE 138 (290)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHhc------cCCCEEEEC
Confidence 5667776 89999999999999992 234666664
|
|
| >TIGR00073 hypB hydrogenase accessory protein HypB | Back alignment and domain information |
|---|
Probab=93.21 E-value=4.1 Score=41.28 Aligned_cols=35 Identities=17% Similarity=0.215 Sum_probs=29.9
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.+.+.|+|. .|+|||++...|++.+ ..+.+++.++
T Consensus 22 ~~~i~~~G~-~gsGKTTli~~l~~~~------~~~~~v~v~~ 56 (207)
T TIGR00073 22 LVVLNFMSS-PGSGKTTLIEKLIDNL------KDEVKIAVIE 56 (207)
T ss_pred cEEEEEECC-CCCCHHHHHHHHHHHH------hcCCeEEEEE
Confidence 457889988 9999999999999987 4467899888
|
HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases. |
| >COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.44 Score=48.18 Aligned_cols=46 Identities=15% Similarity=0.107 Sum_probs=31.6
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCC-CCChHHHHHH
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYP-HDSDSRFLFT 95 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~-~~~d~~~~~~ 95 (719)
.+=|.| .-|+|||++...+++.|+ . .++++..+ +.- ...|+.++.+
T Consensus 15 ~i~v~G-p~GSGKTaLie~~~~~L~-----~-~~~~aVI~----~Di~t~~Da~~l~~ 61 (202)
T COG0378 15 RIGVGG-PPGSGKTALIEKTLRALK-----D-EYKIAVIT----GDIYTKEDADRLRK 61 (202)
T ss_pred EEEecC-CCCcCHHHHHHHHHHHHH-----h-hCCeEEEe----ceeechhhHHHHHh
Confidence 444555 499999999999999993 3 48888877 321 2356555544
|
|
| >PRK08760 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.65 Score=53.54 Aligned_cols=37 Identities=16% Similarity=0.237 Sum_probs=30.4
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
-.+.|.+..+|+|||++++-++.... . +.|.+|.+|=
T Consensus 229 G~LivIaarPg~GKTafal~iA~~~a---~-~~g~~V~~fS 265 (476)
T PRK08760 229 TDLIILAARPAMGKTTFALNIAEYAA---I-KSKKGVAVFS 265 (476)
T ss_pred CceEEEEeCCCCChhHHHHHHHHHHH---H-hcCCceEEEe
Confidence 35888889999999999999997662 2 5588999995
|
|
| >PRK05595 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.79 Score=52.29 Aligned_cols=37 Identities=16% Similarity=0.199 Sum_probs=30.3
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..+.|.|..+|+|||++++-++..+. . ++|.+|.+|=
T Consensus 201 g~liviaarpg~GKT~~al~ia~~~a---~-~~g~~vl~fS 237 (444)
T PRK05595 201 GDMILIAARPSMGKTTFALNIAEYAA---L-REGKSVAIFS 237 (444)
T ss_pred CcEEEEEecCCCChHHHHHHHHHHHH---H-HcCCcEEEEe
Confidence 44888899999999999999997542 1 5699999995
|
|
| >PRK08506 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=92.39 E-value=1.6 Score=50.36 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=31.1
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..++|.|..+|+|||++++-++..+. ++|.+|.+|=
T Consensus 192 G~LivIaarpg~GKT~fal~ia~~~~-----~~g~~V~~fS 227 (472)
T PRK08506 192 GDLIIIAARPSMGKTTLCLNMALKAL-----NQDKGVAFFS 227 (472)
T ss_pred CceEEEEcCCCCChHHHHHHHHHHHH-----hcCCcEEEEe
Confidence 34899999999999999999998773 6689999995
|
|
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=92.37 E-value=3.5 Score=41.82 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
.+-|+|. .|+|||++...|++.+
T Consensus 3 ~i~i~G~-~GsGKTTll~~l~~~l 25 (199)
T TIGR00101 3 KIGVAGP-VGSGKTALIEALTRAL 25 (199)
T ss_pred EEEEECC-CCCCHHHHHHHHHHhh
Confidence 3667776 8999999999999988
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif | Back alignment and domain information |
|---|
Probab=92.20 E-value=0.16 Score=50.62 Aligned_cols=36 Identities=8% Similarity=0.303 Sum_probs=29.4
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
...++++|. +|+|||+++.+++..+. ++|++|.|++
T Consensus 47 ~~~l~l~G~-~G~GKThLa~ai~~~~~-----~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGP-PGTGKTHLAVAIANEAI-----RKGYSVLFIT 82 (178)
T ss_dssp --EEEEEES-TTSSHHHHHHHHHHHHH-----HTT--EEEEE
T ss_pred CeEEEEEhh-HhHHHHHHHHHHHHHhc-----cCCcceeEee
Confidence 457999996 99999999999999885 7899999998
|
They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A. |
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.08 E-value=0.64 Score=51.73 Aligned_cols=73 Identities=12% Similarity=0.132 Sum_probs=50.3
Q ss_pred EEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeee--hhccCC--Cc
Q 005009 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTG--GV 695 (719)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtl--gK~Lgg--G~ 695 (719)
|+..-+|-. .|.+.| ++++.+ ++||+++|+|=+|+ +|- .-+-.+. -|++++ -|.|+| |
T Consensus 140 V~~~h~~t~----tG~~~p----i~~I~~--~~~g~~~vVDa~qs-~G~--~pidv~~----iD~~~~s~~K~l~~P~G- 201 (378)
T PRK03080 140 VVFTWNGTT----TGVRVP----VARWIG--ADREGLTICDATSA-AFA--LPLDWSK----LDVYTFSWQKVLGGEGG- 201 (378)
T ss_pred EEEEecCCc----cceecc----chhhcc--ccCCCeEEEecccc-ccc--CCCCHHH----CcEEEEehhhhCCCCCc-
Confidence 555555553 578877 667666 78999999999996 422 1232232 388854 598876 4
Q ss_pred cchheeEeCHHHHhhhc
Q 005009 696 IPLAATLATNAVFDSFV 712 (719)
Q Consensus 696 ~Plsavl~~~~i~~~~~ 712 (719)
+|.+.++++..+.+.
T Consensus 202 --~g~l~v~~~~~~~~~ 216 (378)
T PRK03080 202 --HGMAILSPRAVERLE 216 (378)
T ss_pred --eEEEEECHHHHHhhh
Confidence 688999999887654
|
|
| >PRK05636 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=91.91 E-value=1 Score=52.21 Aligned_cols=37 Identities=22% Similarity=0.208 Sum_probs=29.6
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..+.|.+..+|+|||++++-+++... . +.|++|.+|=
T Consensus 265 G~Liiiaarpg~GKT~~al~~a~~~a---~-~~g~~v~~fS 301 (505)
T PRK05636 265 GQMIIVAARPGVGKSTLALDFMRSAS---I-KHNKASVIFS 301 (505)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHH---H-hCCCeEEEEE
Confidence 34778888999999999999987652 2 5688898884
|
|
| >PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional | Back alignment and domain information |
|---|
Probab=91.68 E-value=0.24 Score=49.40 Aligned_cols=37 Identities=19% Similarity=0.162 Sum_probs=32.5
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
+++.+.|+|. +|+|||++...|++.| + .+|++|+..|
T Consensus 5 ~~~ii~ivG~-sgsGKTTLi~~li~~l----~-~~g~~vg~Ik 41 (173)
T PRK10751 5 MIPLLAIAAW-SGTGKTTLLKKLIPAL----C-ARGIRPGLIK 41 (173)
T ss_pred CceEEEEECC-CCChHHHHHHHHHHHH----h-hcCCeEEEEE
Confidence 4567888886 9999999999999999 3 7799999999
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=91.63 E-value=0.66 Score=52.47 Aligned_cols=79 Identities=16% Similarity=0.156 Sum_probs=50.2
Q ss_pred EEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccC---cccccccc-CCCccee---eehhccC
Q 005009 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG---VETTADLL-GCVPDIA---CYGKLLT 692 (719)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG---~~~a~e~~-gv~PDIv---tlgK~Lg 692 (719)
++-++--| +.=.|.+. +.+.+++|.++|++||+++|.||+..+|.--| .......+ .....++ +|||.++
T Consensus 196 ~~i~~~~P--~NPTG~v~-s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~ 272 (423)
T PLN02397 196 FVLLHACA--HNPTGVDP-TPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMG 272 (423)
T ss_pred EEEEeCCC--CCCCCCCC-CHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccCC
Confidence 33333335 34446554 78899999999999999999999999883212 11111111 1112244 6899999
Q ss_pred -CCccchheeE
Q 005009 693 -GGVIPLAATL 702 (719)
Q Consensus 693 -gG~~Plsavl 702 (719)
.| +=+|.++
T Consensus 273 ~~G-~RvG~~v 282 (423)
T PLN02397 273 LYG-ERVGALS 282 (423)
T ss_pred Ccc-ccceEEE
Confidence 57 5777763
|
|
| >TIGR00665 DnaB replicative DNA helicase | Back alignment and domain information |
|---|
Probab=91.61 E-value=1.2 Score=50.45 Aligned_cols=37 Identities=19% Similarity=0.322 Sum_probs=29.7
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..+.|.+..+|+|||++++-++..+. . +.|.+|.||=
T Consensus 195 G~l~vi~g~pg~GKT~~~l~~a~~~a---~-~~g~~vl~~S 231 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFALNIAENAA---I-KEGKPVAFFS 231 (434)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHH---H-hCCCeEEEEe
Confidence 34888888899999999999887653 2 4688999985
|
This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. |
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=91.59 E-value=3.4 Score=48.44 Aligned_cols=59 Identities=12% Similarity=0.039 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceee--ehhccCCCccch-heeEeCHH
Q 005009 643 QRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPL-AATLATNA 706 (719)
Q Consensus 643 l~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvt--lgK~LggG~~Pl-savl~~~~ 706 (719)
+++++++|+++|++|++|-.|+ .|-........-+ ...|++| .-|.|-| |- |.++++++
T Consensus 315 ~~~i~eIAdevGA~LmvD~AH~-aGLIa~g~~~sP~-~~aDvvt~TTHKtLrG---PrGG~I~~r~~ 376 (586)
T PLN02271 315 YARFRQIADKCGAVLMCDMAHI-SGLVAAKECVNPF-DYCDIVTSTTHKSLRG---PRGGIIFYRKG 376 (586)
T ss_pred HHHHHHHHHHcCCEEEEECccc-ccccccCcCCCCC-cCCcEEEeCCcccCCC---CCceEEEeccc
Confidence 7899999999999999999997 3223221110011 1479885 5699965 11 33565654
|
|
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.53 E-value=0.25 Score=48.54 Aligned_cols=37 Identities=14% Similarity=0.039 Sum_probs=32.6
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
++..++|||. .|||||+++.-|...|. ++|++|+.|-
T Consensus 4 ~~mki~ITG~-PGvGKtTl~~ki~e~L~-----~~g~kvgGf~ 40 (179)
T COG1618 4 MAMKIFITGR-PGVGKTTLVLKIAEKLR-----EKGYKVGGFI 40 (179)
T ss_pred cceEEEEeCC-CCccHHHHHHHHHHHHH-----hcCceeeeEE
Confidence 3457999997 99999999999999994 8899999886
|
|
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.49 E-value=2 Score=48.30 Aligned_cols=170 Identities=16% Similarity=0.101 Sum_probs=99.2
Q ss_pred CChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCc
Q 005009 441 VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (719)
Q Consensus 441 ~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t 520 (719)
.++-...|+++++++=| -+.++.++||--|+-+++-..+ +.| ..||..+..|.|.-
T Consensus 61 ~nPT~~~lE~~~a~LEg---~~~~~afsSGmaAI~~~~l~ll-----~~G----------------D~vl~~~~~YG~t~ 116 (396)
T COG0626 61 GNPTRDALEEALAELEG---GEDAFAFSSGMAAISTALLALL-----KAG----------------DHVLLPDDLYGGTY 116 (396)
T ss_pred CCccHHHHHHHHHHhhC---CCcEEEecCcHHHHHHHHHHhc-----CCC----------------CEEEecCCccchHH
Confidence 46777889999999865 3689999999888888765542 112 47888888887732
Q ss_pred cccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHH
Q 005009 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (719)
Q Consensus 521 ~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~ 600 (719)
...-.+. +.++. . +.|-|. .+
T Consensus 117 ~~~~~~l--------------~~~gi--------------~----------------~~~~d~-------~~-------- 137 (396)
T COG0626 117 RLFEKIL--------------QKFGV--------------E----------------VTFVDP-------GD-------- 137 (396)
T ss_pred HHHHHHH--------------HhcCe--------------E----------------EEEECC-------CC--------
Confidence 2211111 00000 0 001110 00
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC
Q 005009 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (719)
Q Consensus 601 ~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv 680 (719)
.+.+++.+. ++++-+|++|+- ..----+.. +++|.++++++|+++|+|....+ + ..++-+..
T Consensus 138 ~~~~~~~~~-------~~~tk~v~lEtP-sNP~l~v~D----I~~i~~~A~~~g~~vvVDNTfat----P--~~q~PL~~ 199 (396)
T COG0626 138 DEALEAAIK-------EPNTKLVFLETP-SNPLLEVPD----IPAIARLAKAYGALVVVDNTFAT----P--VLQRPLEL 199 (396)
T ss_pred hHHHHHHhc-------ccCceEEEEeCC-CCccccccc----HHHHHHHHHhcCCEEEEECCccc----c--cccChhhc
Confidence 122333332 247889999975 222222233 89999999999999999999853 2 22222333
Q ss_pred Ccceee--ehhccCCCc-cchheeEe-CHHHHhhh
Q 005009 681 VPDIAC--YGKLLTGGV-IPLAATLA-TNAVFDSF 711 (719)
Q Consensus 681 ~PDIvt--lgK~LggG~-~Plsavl~-~~~i~~~~ 711 (719)
-.|||+ .-|=|+|.- +=.|+|++ ++++.+.+
T Consensus 200 GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~ 234 (396)
T COG0626 200 GADIVVHSATKYLGGHSDVLGGVVLTPNEELYELL 234 (396)
T ss_pred CCCEEEEeccccccCCcceeeeEEecChHHHHHHH
Confidence 479985 679998721 22233554 44555543
|
|
| >COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.49 E-value=1.7 Score=48.79 Aligned_cols=58 Identities=17% Similarity=0.235 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCC---CC---------chhHHHHhhcCCCEEEEEc-
Q 005009 192 VGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGP---SG---------SLQCDLYRPFRLPGILVGD- 258 (719)
Q Consensus 192 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~---~~---------~~~~dla~~l~~pvilV~~- 258 (719)
..++.|.+.+.+ .+.|++||...-.++++.- .+ ...+++||.-+.++++|+.
T Consensus 155 t~~e~I~~~l~~---------------~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGHV 219 (456)
T COG1066 155 TNLEDIIAELEQ---------------EKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGHV 219 (456)
T ss_pred cCHHHHHHHHHh---------------cCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEEE
Confidence 467777777665 2489999999988888732 12 2457899999999999999
Q ss_pred CCCChH
Q 005009 259 GRLGGI 264 (719)
Q Consensus 259 ~~~g~i 264 (719)
.+.|.|
T Consensus 220 TKeG~I 225 (456)
T COG1066 220 TKEGAI 225 (456)
T ss_pred cccccc
Confidence 556655
|
|
| >TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily | Back alignment and domain information |
|---|
Probab=90.92 E-value=2.8 Score=47.44 Aligned_cols=37 Identities=16% Similarity=0.322 Sum_probs=30.4
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..+.|.+..+|+|||++++-++..+. . +.|.+|.||=
T Consensus 194 g~liviag~pg~GKT~~al~ia~~~a---~-~~g~~v~~fS 230 (421)
T TIGR03600 194 GDLIVIGARPSMGKTTLALNIAENVA---L-REGKPVLFFS 230 (421)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHH---H-hCCCcEEEEE
Confidence 34888889999999999999996652 2 5689999995
|
Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model. |
| >PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional | Back alignment and domain information |
|---|
Probab=90.73 E-value=0.32 Score=54.09 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=34.5
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KP 79 (719)
+++.+-|+|. +|+|||++...|++.|. ++|++|++.|=
T Consensus 204 ~~~~~~~~g~-~~~GKtt~~~~l~~~l~-----~~g~~v~~iKh 241 (366)
T PRK14489 204 APPLLGVVGY-SGTGKTTLLEKLIPELI-----ARGYRIGLIKH 241 (366)
T ss_pred CccEEEEecC-CCCCHHHHHHHHHHHHH-----HcCCEEEEEEE
Confidence 5778999996 99999999999999994 88999999994
|
|
| >PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork | Back alignment and domain information |
|---|
Probab=90.69 E-value=0.8 Score=48.09 Aligned_cols=36 Identities=14% Similarity=0.263 Sum_probs=30.3
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.++|.|..+|+|||++++-++..+. . +.|.+|.||=
T Consensus 20 ~L~vi~a~pg~GKT~~~l~ia~~~a---~-~~~~~vly~S 55 (259)
T PF03796_consen 20 ELTVIAARPGVGKTAFALQIALNAA---L-NGGYPVLYFS 55 (259)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH---H-TTSSEEEEEE
T ss_pred cEEEEEecccCCchHHHHHHHHHHH---H-hcCCeEEEEc
Confidence 4888999999999999999999884 2 3479999997
|
Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C .... |
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.59 E-value=3.5 Score=46.45 Aligned_cols=177 Identities=15% Similarity=0.104 Sum_probs=110.3
Q ss_pred hHHHHHHHHHHhccCCCCCCeEEE-eCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCcc
Q 005009 443 EPALECAELLLQGVGKGWASRAYF-SDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTL 521 (719)
Q Consensus 443 ~~~~~Lae~L~~~~~~~~~~rv~f-~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~ 521 (719)
+...+|.+.|+++.| ++.|.+ -|+|+..==+.|-+. |+|+..+|. ...+++....|-||.--
T Consensus 109 ~li~~Lq~~L~~ITG---~DavsLQP~AGAqGE~aGll~I-r~YHe~rG~-------------~~R~~~LIP~SAHGTNP 171 (496)
T COG1003 109 ELIYELQEWLKEITG---MDAVSLQPNAGAQGEYAGLLAI-RAYHESRGE-------------GHRNICLIPDSAHGTNP 171 (496)
T ss_pred HHHHHHHHHHHHhcC---CceeeccCCCCcchhhHHHHHH-HHHHHHcCC-------------CcCcEEEeeccccCCCh
Confidence 445689999999988 566655 478998888888888 888877764 24578888999999766
Q ss_pred ccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHH
Q 005009 522 GAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYS 601 (719)
Q Consensus 522 galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~ 601 (719)
.+.++.|- ..+.++. +.+... + +
T Consensus 172 ASAam~G~------------------------------~VV~V~~---------------~~~G~V-------D-----l 194 (496)
T COG1003 172 ASAAMAGF------------------------------KVVVVKC---------------DENGNV-------D-----L 194 (496)
T ss_pred hhHhhcCc------------------------------eEEEEec---------------CCCCCc-------c-----H
Confidence 66665542 1222221 000000 1 3
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEc-cccccCCccccCCHHHHHHHHHHHHhcCCcEEEecc----ccCccccCccc-cc
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIE-PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEV----FTGFWRLGVET-TA 675 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvE-PViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEV----qTGfGRtG~~~-a~ 675 (719)
+.|+..+. +++||+++- | +.-|+.. +=.+++.++.+++|..|..|=. +-|.-|-|.++ -.
T Consensus 195 ddLk~k~~--------~~~AalMiTnP---sT~GvFE---~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~~rPGd~G~DV 260 (496)
T COG1003 195 DDLRAKAE--------DNLAALMITNP---STLGVFE---EDIREICEIVHEAGGQVYYDGANLNAIVGLARPGDMGFDV 260 (496)
T ss_pred HHHHHHhc--------cceeEEEeccC---cccccch---hhHHHHHHHHHHcCCEEEecCcchhhhhccccccccccce
Confidence 55655443 678877765 5 3445532 3356777777999999999964 55777888753 33
Q ss_pred cccCCCcceeeehhccCCCccch-heeEeCHHHHhhh
Q 005009 676 DLLGCVPDIACYGKLLTGGVIPL-AATLATNAVFDSF 711 (719)
Q Consensus 676 e~~gv~PDIvtlgK~LggG~~Pl-savl~~~~i~~~~ 711 (719)
.|+++.- ||+=.=||| =|- |-|.+++++...+
T Consensus 261 ~HlNLHK---TF~iPHGGG-GPG~GPvgVk~~L~pfL 293 (496)
T COG1003 261 VHLNLHK---TFCIPHGGG-GPGAGPVGVKAHLAPFL 293 (496)
T ss_pred EEeeccc---ccccCCCCC-CCCCCceehHhhccccC
Confidence 3444321 555555554 243 3455666666554
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=90.54 E-value=0.79 Score=51.35 Aligned_cols=86 Identities=16% Similarity=0.200 Sum_probs=57.5
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc-cccccCCCccee---eehhccCCCcc
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPDIA---CYGKLLTGGVI 696 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~-a~e~~gv~PDIv---tlgK~LggG~~ 696 (719)
+.++.-| +.=.|.+. +.+-+++|.++|++|++++|.||+..-+ .....+ .... ...+.++ +|+|....| +
T Consensus 182 ~i~l~~P--~NPTG~~~-s~~~~~~l~~~a~~~~~~iI~De~Y~~~-~~~~~~~~~~~-~~~~~vI~~~SfSK~~~pG-l 255 (416)
T PRK09440 182 AICVSRP--TNPTGNVL-TDEELEKLDALARQHNIPLLIDNAYGPP-FPGIIFSEATP-LWNPNIILCMSLSKLGLPG-V 255 (416)
T ss_pred EEEEecC--CCCCCccC-CHHHHHHHHHHHHHcCCcEEEeCCcccc-CCCcchhhcCc-cccCCeEEEecccccCCCc-c
Confidence 4455566 45567765 7888999999999999999999998421 111000 0000 0122333 799975568 7
Q ss_pred chheeEeCHHHHhhhc
Q 005009 697 PLAATLATNAVFDSFV 712 (719)
Q Consensus 697 Plsavl~~~~i~~~~~ 712 (719)
-+|.+++++++++.+.
T Consensus 256 RiG~~i~~~~l~~~~~ 271 (416)
T PRK09440 256 RCGIVIADEEIIEALS 271 (416)
T ss_pred eEEEEeCCHHHHHHHH
Confidence 8999999999887764
|
|
| >PRK09165 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=90.35 E-value=2.2 Score=49.45 Aligned_cols=57 Identities=12% Similarity=0.072 Sum_probs=39.0
Q ss_pred CCCHHHHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCC---CC---------chhHHHHhhcCCCEEEEEc
Q 005009 191 VVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGP---SG---------SLQCDLYRPFRLPGILVGD 258 (719)
Q Consensus 191 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~---~~---------~~~~dla~~l~~pvilV~~ 258 (719)
.+..+.|+..+.++.+. .+.++|||--.+-+..+.. .. ...-.+|+.+++|||+++.
T Consensus 323 ~~ti~~i~~~ir~l~~~-----------~~~~lvvIDyLqli~~~~~~~~~~r~~ev~~is~~LK~lAkel~ipVi~lsQ 391 (497)
T PRK09165 323 ALSISQLRARARRLKRQ-----------HGLDLLVVDYLQLIRGSSKRSSDNRVQEISEITQGLKALAKELNIPVIALSQ 391 (497)
T ss_pred CCCHHHHHHHHHHHHHh-----------cCCCEEEEcchHhccCCCCCCCCchHHHHHHHHHHHHHHHHHhCCeEEEeec
Confidence 35778888888776543 3589999998775544432 11 1235678888999988886
|
|
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.11 E-value=4.3 Score=45.40 Aligned_cols=84 Identities=19% Similarity=0.253 Sum_probs=55.0
Q ss_pred CCcEEEEE-EccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccC--ccccCccccc-cc---cCCCccee----
Q 005009 617 SGCIGALI-IEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG--FWRLGVETTA-DL---LGCVPDIA---- 685 (719)
Q Consensus 617 ~~~iAAvI-vEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTG--fGRtG~~~a~-e~---~gv~PDIv---- 685 (719)
.-+|.+|| +-| +.-=|... +++-|..|...+.+++|.+|.|||..| |+.. +|-.. +. -...||-+
T Consensus 224 ~~kVkGvlitNP--sNPLG~~~-~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~-~F~Sv~ev~~~~~~~~~rvHivy 299 (471)
T KOG0256|consen 224 GLKVKGVLITNP--SNPLGTTL-SPEELISLLNFASRKNIHVISDEIYAGSVFDKS-EFRSVLEVRKDPHLDPDRVHIVY 299 (471)
T ss_pred CCceeEEEEeCC--CCCCCCcc-CHHHHHHHHHHHhhcceEEEeehhhcccccCcc-CceEHHHHhhccccCCCcEEEEE
Confidence 44676554 555 33335544 688899999999999999999999986 5444 22111 11 11267743
Q ss_pred eehhccC-CCccchheeEeCH
Q 005009 686 CYGKLLT-GGVIPLAATLATN 705 (719)
Q Consensus 686 tlgK~Lg-gG~~Plsavl~~~ 705 (719)
-++|=+| -| +-.|++-...
T Consensus 300 slSKD~GlpG-fRvGviYS~n 319 (471)
T KOG0256|consen 300 SLSKDFGLPG-FRVGVIYSNN 319 (471)
T ss_pred EeccccCCCc-eEEEEEEecC
Confidence 6899998 47 5777665544
|
|
| >PHA02542 41 41 helicase; Provisional | Back alignment and domain information |
|---|
Probab=90.00 E-value=3.4 Score=47.65 Aligned_cols=36 Identities=22% Similarity=0.452 Sum_probs=31.1
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..+.|.+..+|+|||++++-++.... +.|++|.+|=
T Consensus 190 G~LiiIaarPgmGKTtfalniA~~~a-----~~g~~Vl~fS 225 (473)
T PHA02542 190 KTLNVLLAGVNVGKSLGLCSLAADYL-----QQGYNVLYIS 225 (473)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHHHH-----hcCCcEEEEe
Confidence 34888899999999999999998873 6699999985
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=89.99 E-value=1.9 Score=47.52 Aligned_cols=74 Identities=8% Similarity=0.087 Sum_probs=49.0
Q ss_pred CCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeee--hhccCCC
Q 005009 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGG 694 (719)
Q Consensus 617 ~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtl--gK~LggG 694 (719)
..-|+.+-.|.. .|+..+ ++++.+|+++|+|=||+ +| +.-.-.+.+ |++++ -|++|
T Consensus 131 ~~~v~~th~ETs----tGv~~~---------~l~~~~~~l~iVDavss-~g--~~~id~~~~----d~~~~ssqK~lg-- 188 (349)
T TIGR01364 131 AAYVHYCANETI----HGVEFR---------ELPDVKNAPLVADMSSN-IL--SRPIDVSKF----GLIYAGAQKNIG-- 188 (349)
T ss_pred CCEEEEcCCCCc----ccEecc---------eecccCCCeEEEEcccc-cc--CccCCHHHc----cEEEEecccccC--
Confidence 345667777775 345432 77888999999999997 32 222333333 46654 48884
Q ss_pred ccc-hheeEeCHHHHhhhcC
Q 005009 695 VIP-LAATLATNAVFDSFVG 713 (719)
Q Consensus 695 ~~P-lsavl~~~~i~~~~~~ 713 (719)
-| +|.+.+++++.+.+..
T Consensus 189 -P~Glg~l~~s~~~~~~~~~ 207 (349)
T TIGR01364 189 -PAGLTVVIVRKDLLGRASR 207 (349)
T ss_pred -CCceEEEEECHHHHhhccc
Confidence 34 7899999999876543
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
Probab=89.85 E-value=0.47 Score=43.22 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
.|+|+|+ +||||||++..|++.+
T Consensus 1 vI~I~G~-~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGP-PGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECC-CCCCHHHHHHHHHHHH
Confidence 3789999 9999999999999988
|
... |
| >PRK08006 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=89.80 E-value=2.6 Score=48.61 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=30.8
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..+.|.|..+++|||++++-|+.... . ++|++|.+|=
T Consensus 224 G~LiiIaarPgmGKTafalnia~~~a---~-~~g~~V~~fS 260 (471)
T PRK08006 224 SDLIIVAARPSMGKTTFAMNLCENAA---M-LQDKPVLIFS 260 (471)
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHH---H-hcCCeEEEEe
Confidence 45899999999999999999987762 2 4688999995
|
|
| >cd00984 DnaB_C DnaB helicase C terminal domain | Back alignment and domain information |
|---|
Probab=89.77 E-value=5 Score=41.26 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=27.8
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 40 ~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
+++.+..+|+|||++++-++..+. . +.|.+|.||=
T Consensus 15 l~lI~G~~G~GKT~~~~~~~~~~~---~-~~g~~vly~s 49 (242)
T cd00984 15 LIIIAARPSMGKTAFALNIAENIA---K-KQGKPVLFFS 49 (242)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHH---H-hCCCceEEEe
Confidence 566666799999999999877764 2 3499999987
|
The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. |
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=89.55 E-value=0.43 Score=49.43 Aligned_cols=36 Identities=28% Similarity=0.580 Sum_probs=31.3
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KP 79 (719)
+.++|+|. +|+|||+++.++++.+. ++|.++.|+..
T Consensus 40 ~~l~l~G~-~G~GKThL~~ai~~~~~-----~~~~~~~y~~~ 75 (229)
T PRK06893 40 PFFYIWGG-KSSGKSHLLKAVSNHYL-----LNQRTAIYIPL 75 (229)
T ss_pred CeEEEECC-CCCCHHHHHHHHHHHHH-----HcCCCeEEeeH
Confidence 56899998 99999999999999984 66888888773
|
|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=89.43 E-value=0.3 Score=51.63 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=30.5
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.+.++|+|. +|+|||+++.+|+..+. ++|++|.|+.
T Consensus 98 ~~nlll~Gp-~GtGKThLa~al~~~a~-----~~g~~v~f~t 133 (254)
T PRK06526 98 KENVVFLGP-PGTGKTHLAIGLGIRAC-----QAGHRVLFAT 133 (254)
T ss_pred CceEEEEeC-CCCchHHHHHHHHHHHH-----HCCCchhhhh
Confidence 468999996 89999999999999884 6788887743
|
|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=89.41 E-value=0.46 Score=49.32 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=30.7
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..++|+|. +|+|||.++.+++..+. ++|+++.|+-
T Consensus 42 ~~l~l~G~-~G~GKThL~~a~~~~~~-----~~~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGP-AGTGKTHLALALCAAAE-----QAGRSSAYLP 76 (233)
T ss_pred CeEEEECC-CCCCHHHHHHHHHHHHH-----HcCCcEEEEe
Confidence 34999998 99999999999999984 6788998885
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=89.40 E-value=11 Score=42.86 Aligned_cols=85 Identities=12% Similarity=0.149 Sum_probs=47.0
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhc----CCCEEEEEcCCCC--hHHHHHHHHHHHHhCCCcEEEEEEccCC-CC
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPF----RLPGILVGDGRLG--GISGTISAYESLKLRGYDVVAVVFEDHG-LV 292 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l----~~pvilV~~~~~g--~i~~~~~~~~~l~~~~~~v~gvi~N~~~-~~ 292 (719)
++|+++|.++| +++-.. ..+-++.... ...++||.+...+ .+.+++..+ ..+.+-|+|+-+.+ ..
T Consensus 269 ~~d~VLIDTaG--rsqrd~-~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f-----~~~~~~~~I~TKlDEt~ 340 (420)
T PRK14721 269 GKHMVLIDTVG--MSQRDQ-MLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAY-----QGHGIHGCIITKVDEAA 340 (420)
T ss_pred CCCEEEecCCC--CCcchH-HHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHh-----cCCCCCEEEEEeeeCCC
Confidence 38999999986 333221 2223333222 2347899886533 344444333 35778999999983 23
Q ss_pred CHHHHHHhhcC-CCcEEecCC
Q 005009 293 NEVPLMSYLRN-RVPVLVLPP 312 (719)
Q Consensus 293 ~~~~l~~~~~~-~~pvlglP~ 312 (719)
..-.+.+..-+ ++|+.-+-.
T Consensus 341 ~~G~~l~~~~~~~lPi~yvt~ 361 (420)
T PRK14721 341 SLGIALDAVIRRKLVLHYVTN 361 (420)
T ss_pred CccHHHHHHHHhCCCEEEEEC
Confidence 33333332222 889876533
|
|
| >TIGR03453 partition_RepA plasmid partitioning protein RepA | Back alignment and domain information |
|---|
Probab=89.31 E-value=0.87 Score=50.93 Aligned_cols=67 Identities=13% Similarity=0.091 Sum_probs=47.0
Q ss_pred CCCchhHHHHHHHHhcccCCCCC---CCCC-CCCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 7 HHYPDHHRRILLRLFHHSTFHPQ---PLDL-PLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.-|.+++-+.|-..+......+. +... -.+++.|.|++.-.|||||++|..|..+|. ++|+||...=
T Consensus 70 r~yt~~di~~l~~~~~~~~~~~~~~~~~r~~g~~~~vI~v~n~KGGvGKTT~a~nLA~~La-----~~G~rVLlID 140 (387)
T TIGR03453 70 RSYTLEQINELRRHLAQRGREARRYLPHRRGGEHLQVIAVTNFKGGSGKTTTAAHLAQYLA-----LRGYRVLAID 140 (387)
T ss_pred eeeCHHHHHHHHHHHHhccccccccCCCcCCCCCceEEEEEccCCCcCHHHHHHHHHHHHH-----hcCCCEEEEe
Confidence 35777777766666654222111 1111 134678999999999999999999999994 7799997764
|
Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error. |
| >cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation | Back alignment and domain information |
|---|
Probab=89.27 E-value=0.54 Score=41.83 Aligned_cols=34 Identities=15% Similarity=0.338 Sum_probs=29.8
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 40 ~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
+.|.+...|+|||++++.|+..|. ++|.+|..+-
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~-----~~~~~vl~~d 35 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALA-----RRGKRVLLID 35 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHH-----hCCCcEEEEe
Confidence 678899999999999999999994 6788887775
|
ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition. |
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=89.12 E-value=0.44 Score=52.26 Aligned_cols=35 Identities=23% Similarity=0.438 Sum_probs=31.4
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..++++|. +|+|||+++.+++..+. ++|++|.|+-
T Consensus 184 ~~Lll~G~-~GtGKThLa~aIa~~l~-----~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGN-TGTGKTFLSNCIAKELL-----DRGKSVIYRT 218 (329)
T ss_pred CcEEEECC-CCCcHHHHHHHHHHHHH-----HCCCeEEEEE
Confidence 57999995 89999999999999995 7799998877
|
|
| >PRK08939 primosomal protein DnaI; Reviewed | Back alignment and domain information |
|---|
Probab=89.05 E-value=0.48 Score=51.42 Aligned_cols=36 Identities=11% Similarity=0.220 Sum_probs=32.3
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.+.++++|. +|+|||+++.+|+..+. ++|++|.++.
T Consensus 156 ~~gl~L~G~-~G~GKThLa~Aia~~l~-----~~g~~v~~~~ 191 (306)
T PRK08939 156 VKGLYLYGD-FGVGKSYLLAAIANELA-----KKGVSSTLLH 191 (306)
T ss_pred CCeEEEECC-CCCCHHHHHHHHHHHHH-----HcCCCEEEEE
Confidence 468999996 89999999999999994 7899998887
|
|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=88.82 E-value=0.54 Score=49.56 Aligned_cols=35 Identities=14% Similarity=0.335 Sum_probs=30.7
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..++++|. +|+|||+++.+|+..+. ++|++|.++.
T Consensus 102 ~~l~l~G~-~GtGKThLa~AIa~~l~-----~~g~~v~~i~ 136 (248)
T PRK12377 102 TNFVFSGK-PGTGKNHLAAAIGNRLL-----AKGRSVIVVT 136 (248)
T ss_pred CeEEEECC-CCCCHHHHHHHHHHHHH-----HcCCCeEEEE
Confidence 57999996 89999999999999995 6789987765
|
|
| >PRK05748 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=88.80 E-value=2.8 Score=47.87 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=30.1
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..+.|.|..+|+|||++++-++.... . +.|.+|.+|=
T Consensus 203 G~livIaarpg~GKT~~al~ia~~~a---~-~~g~~v~~fS 239 (448)
T PRK05748 203 NDLIIVAARPSVGKTAFALNIAQNVA---T-KTDKNVAIFS 239 (448)
T ss_pred CceEEEEeCCCCCchHHHHHHHHHHH---H-hCCCeEEEEe
Confidence 34888888899999999999987652 2 5689999985
|
|
| >PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=88.78 E-value=1.6 Score=43.21 Aligned_cols=34 Identities=18% Similarity=0.143 Sum_probs=27.2
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
|.+.|+|- -|+|||++-..|++.. .+|.|++...
T Consensus 1 Pv~ii~Gf-LGsGKTTli~~ll~~~------~~~~~~~vI~ 34 (178)
T PF02492_consen 1 PVIIITGF-LGSGKTTLINHLLKRN------RQGERVAVIV 34 (178)
T ss_dssp -EEEEEES-TTSSHHHHHHHHHHHH------TTTS-EEEEE
T ss_pred CEEEEEcC-CCCCHHHHHHHHHHHh------cCCceeEEEE
Confidence 46788887 8999999999999733 6799999987
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B. |
| >PRK10037 cell division protein; Provisional | Back alignment and domain information |
|---|
Probab=88.68 E-value=0.59 Score=48.87 Aligned_cols=37 Identities=14% Similarity=0.221 Sum_probs=32.9
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
|+.|-|.+.-.|||||+++..|+.+|. ++|+||...=
T Consensus 1 ~~~iav~n~KGGvGKTT~a~nLA~~La-----~~G~rVLlID 37 (250)
T PRK10037 1 MAILGLQGVRGGVGTTSITAALAWSLQ-----MLGENVLVID 37 (250)
T ss_pred CcEEEEecCCCCccHHHHHHHHHHHHH-----hcCCcEEEEe
Confidence 568999999999999999999999994 8899987764
|
|
| >PRK06904 replicative DNA helicase; Validated | Back alignment and domain information |
|---|
Probab=88.58 E-value=4 Score=47.10 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=30.4
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..++|.|..+|+|||++++-+++... . +.|.+|.+|=
T Consensus 221 G~LiiIaarPg~GKTafalnia~~~a---~-~~g~~Vl~fS 257 (472)
T PRK06904 221 SDLIIVAARPSMGKTTFAMNLCENAA---M-ASEKPVLVFS 257 (472)
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHH---H-hcCCeEEEEe
Confidence 45899999999999999999988652 1 4588999985
|
|
| >PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D | Back alignment and domain information |
|---|
Probab=88.38 E-value=0.55 Score=44.79 Aligned_cols=36 Identities=22% Similarity=0.505 Sum_probs=31.0
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
|.+-|+|+..|+|||++++.|+..|. ++|.+|.++=
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la-----~~~~~Vllid 36 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALA-----RKGKKVLLID 36 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHH-----HTTT-EEEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHH-----hcCCCeEEEE
Confidence 36889999999999999999999995 7788888775
|
|
| >PRK13705 plasmid-partitioning protein SopA; Provisional | Back alignment and domain information |
|---|
Probab=88.32 E-value=1.2 Score=50.12 Aligned_cols=62 Identities=13% Similarity=0.116 Sum_probs=45.0
Q ss_pred CCchhHHHHHHHHhcccCCCCCCCCCCCCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 8 HYPDHHRRILLRLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.|.=..=+.|++++......+ --.+++.|-|+..-.|||||++|..|..+|. .+|+||...=
T Consensus 81 ~ftL~ei~~lr~~~~~~~~r~----~~~~~~vIai~n~KGGVGKTT~a~nLA~~LA-----~~G~rVLlID 142 (388)
T PRK13705 81 GYTIEQINHMRDVFGTRLRRA----EDVFPPVIGVAAHKGGVYKTSVSVHLAQDLA-----LKGLRVLLVE 142 (388)
T ss_pred CcCHHHHHHHHHhhccccccc----CCCCCeEEEEECCCCCchHHHHHHHHHHHHH-----hcCCCeEEEc
Confidence 466555566666665422211 1134678999999999999999999999994 7899997663
|
|
| >PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases | Back alignment and domain information |
|---|
Probab=88.31 E-value=0.62 Score=45.65 Aligned_cols=34 Identities=18% Similarity=0.234 Sum_probs=29.8
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.|+|||. +|+|||+++..|-+.|. ++|.++.++-
T Consensus 4 vIwltGl-sGsGKtTlA~~L~~~L~-----~~g~~~~~LD 37 (156)
T PF01583_consen 4 VIWLTGL-SGSGKTTLARALERRLF-----ARGIKVYLLD 37 (156)
T ss_dssp EEEEESS-TTSSHHHHHHHHHHHHH-----HTTS-EEEEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHH-----HcCCcEEEec
Confidence 5899998 89999999999999994 7899998886
|
Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 719 | ||||
| 4a0g_A | 831 | Structure Of Bifunctional Dapa Aminotransferase-Dtb | 0.0 | ||
| 4a0f_A | 831 | Structure Of Selenomethionine Substituted Bifunctio | 0.0 | ||
| 3lv2_A | 462 | Crystal Structure Of Mycobacterium Tuberculosis 7,8 | 2e-23 | ||
| 3tft_A | 457 | Crystal Structure Of 7,8-Diaminopelargonic Acid Syn | 2e-23 | ||
| 3bv0_A | 437 | Crystal Structure Of Plp Bound 7,8-Diaminopelargoni | 2e-23 | ||
| 1dty_A | 429 | Crystal Structure Of Adenosylmethionine-8-Amino-7-O | 4e-23 | ||
| 1qj3_A | 429 | Crystal Structure Of 7,8-Diaminopelargonic Acid Syn | 2e-22 | ||
| 1mgv_A | 429 | Crystal Structure Of The R391a Mutant Of 7,8-Diamin | 2e-22 | ||
| 1s0a_A | 429 | Crystal Structure Of The Y17f Mutant Of 7,8- Diamin | 8e-22 | ||
| 1s07_A | 429 | Crystal Structure Of The R253a Mutant Of 7,8-Diamin | 1e-21 | ||
| 1s06_A | 429 | Crystal Structure Of The R253k Mutant Of 7,8- Diami | 2e-21 | ||
| 1s09_A | 429 | Crystal Structure Of The Y144f Mutant Of 7,8- Diami | 2e-21 | ||
| 1s08_A | 429 | Crystal Structure Of The D147n Mutant Of 7,8- Diami | 2e-21 | ||
| 3du4_A | 448 | Crystal Structure Of 7-Keto-8-Aminopelargonic Acid | 4e-18 | ||
| 3dod_A | 448 | Crystal Structure Of Plp Bound 7,8-diaminopelargoni | 5e-18 | ||
| 1szk_A | 426 | The Structure Of Gamma-Aminobutyrate Aminotransfera | 1e-10 | ||
| 3a8u_X | 449 | Crystal Structure Of Omega-Amino Acid:pyruvate Amin | 2e-10 | ||
| 1szs_A | 426 | The Structure Of Gamma-aminobutyrate Aminotransfera | 2e-10 | ||
| 1sf2_A | 426 | Structure Of E. Coli Gamma-Aminobutyrate Aminotrans | 2e-10 | ||
| 1szu_A | 426 | The Structure Of Gamma-Aminobutyrate Aminotransfera | 6e-10 | ||
| 2eo5_A | 419 | Crystal Structure Of 4-Aminobutyrate Aminotransfera | 8e-08 | ||
| 3i4j_A | 430 | Crystal Structure Of Aminotransferase, Class Iii Fr | 5e-06 | ||
| 3i5t_A | 476 | Crystal Structure Of Aminotransferase Prk07036 From | 5e-06 | ||
| 3n5m_A | 452 | Crystals Structure Of A Bacillus Anthracis Aminotra | 6e-06 | ||
| 2eh6_A | 375 | Crystal Structure Of Acetylornithine Aminotransfera | 7e-06 | ||
| 4adb_A | 406 | Structural And Functional Study Of Succinyl-ornithi | 7e-06 | ||
| 1m0n_A | 433 | Structure Of Dialkylglycine Decarboxylase Complexed | 1e-05 | ||
| 1d7r_A | 433 | Crystal Structure Of The Complex Of 2,2-Dialkylglyc | 1e-05 | ||
| 1dgd_A | 432 | An Alkali Metal Ion Size-Dependent Switch In The Ac | 1e-05 | ||
| 4a6r_A | 459 | Crystal Structure Of The Omega Transaminase From Ch | 1e-05 | ||
| 1z3z_A | 431 | The Crystal Structure Of A Dgd Mutant: Q52a Length | 1e-05 | ||
| 2can_A | 402 | Human Ornithine Aminotransferase Complexed With L-C | 2e-05 | ||
| 1oat_A | 439 | Ornithine Aminotransferase Length = 439 | 2e-05 | ||
| 2byj_A | 439 | Ornithine Aminotransferase Mutant Y85i Length = 439 | 2e-05 | ||
| 2byl_A | 439 | Structure Of Ornithine Aminotransferase Triple Muta | 2e-05 | ||
| 2e7u_A | 424 | Crystal Structure Of Glutamate-1-Semialdehyde 2,1-A | 2e-05 | ||
| 3lg0_A | 422 | Structure Of Plasmodium Falciparum Ornithine Delta- | 3e-05 | ||
| 1vef_A | 395 | Acetylornithine Aminotransferase From Thermus Therm | 4e-05 | ||
| 3q8n_A | 453 | Crystal Structure Of 4-Aminobutyrate Transaminase F | 7e-05 | ||
| 4ffc_A | 453 | Crystal Structure Of A 4-Aminobutyrate Aminotransfe | 8e-05 | ||
| 2pb0_A | 420 | Structure Of Biosynthetic N-Acetylornithine Aminotr | 1e-04 | ||
| 3bs8_A | 438 | Crystal Structure Of Glutamate 1-Semialdehyde Amino | 2e-04 | ||
| 1z7d_A | 433 | Ornithine Aminotransferase Py00104 From Plasmodium | 5e-04 | ||
| 3nui_A | 478 | Crystal Structure Of Omega-Transferase From Vibrio | 8e-04 | ||
| 4e3r_A | 473 | Plp-Bound Aminotransferase Mutant Crystal Structure | 9e-04 |
| >pdb|4A0G|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb Synthetase From Arabidopsis Thaliana In Its Apo Form. Length = 831 | Back alignment and structure |
|
| >pdb|4A0F|A Chain A, Structure Of Selenomethionine Substituted Bifunctional Dapa Aminotransferase-Dethiobiotin Synthetase From Arabidopsis Thaliana In Its Apo Form. Length = 831 | Back alignment and structure |
|
| >pdb|3LV2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis 7,8-Diaminopelargonic Acid Synthase In Complex With Substrate Analog Sinefungin Length = 462 | Back alignment and structure |
|
| >pdb|3TFT|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase (Bioa) From Mycobacterium Tuberculosis, Pre-Reaction Complex With A 3,6- Dihydropyrid-2-One Heterocycle Inhibitor Length = 457 | Back alignment and structure |
|
| >pdb|3BV0|A Chain A, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid Synthase In Mycobacterium Tuberculosis Length = 437 | Back alignment and structure |
|
| >pdb|1DTY|A Chain A, Crystal Structure Of Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase With Pyridoxal Phosphate Cofactor. Length = 429 | Back alignment and structure |
|
| >pdb|1QJ3|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase In Complex With 7-Keto-8-Aminopelargonic Acid Length = 429 | Back alignment and structure |
|
| >pdb|1MGV|A Chain A, Crystal Structure Of The R391a Mutant Of 7,8-Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1S0A|A Chain A, Crystal Structure Of The Y17f Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1S07|A Chain A, Crystal Structure Of The R253a Mutant Of 7,8-Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1S06|A Chain A, Crystal Structure Of The R253k Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1S09|A Chain A, Crystal Structure Of The Y144f Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1S08|A Chain A, Crystal Structure Of The D147n Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|3DU4|A Chain A, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound 7,8- Diaminopelargonic Acid Synthase In Bacillus Subtilis Length = 448 | Back alignment and structure |
|
| >pdb|3DOD|A Chain A, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid Synthase In Bacillus Subtilis Length = 448 | Back alignment and structure |
|
| >pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase Mutant: E211s Length = 426 | Back alignment and structure |
|
| >pdb|3A8U|X Chain X, Crystal Structure Of Omega-Amino Acid:pyruvate Aminotransferase Length = 449 | Back alignment and structure |
|
| >pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase Mutant: I50q Length = 426 | Back alignment and structure |
|
| >pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase Length = 426 | Back alignment and structure |
|
| >pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase Mutant: V241a Length = 426 | Back alignment and structure |
|
| >pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From Sulfolobus Tokodaii Strain7 Length = 419 | Back alignment and structure |
|
| >pdb|3I4J|A Chain A, Crystal Structure Of Aminotransferase, Class Iii From Deinococcus Radiodurans Length = 430 | Back alignment and structure |
|
| >pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From Rhodobacter Sphaeroides Kd131 Length = 476 | Back alignment and structure |
|
| >pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis Aminotransferase Length = 452 | Back alignment and structure |
|
| >pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From Aquifex Aeolicus Vf5 Length = 375 | Back alignment and structure |
|
| >pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine Transaminase From E. Coli Length = 406 | Back alignment and structure |
|
| >pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With 1- Aminocyclopentanephosphonate Length = 433 | Back alignment and structure |
|
| >pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine Decarboxylase With 5pa Length = 433 | Back alignment and structure |
|
| >pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active Site Structure Of Dialkylglycine Decarboxylase Length = 432 | Back alignment and structure |
|
| >pdb|4A6R|A Chain A, Crystal Structure Of The Omega Transaminase From Chromobacterium Violaceum In The Apo Form, Crystallised From Polyacrylic Acid Length = 459 | Back alignment and structure |
|
| >pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a Length = 431 | Back alignment and structure |
|
| >pdb|2CAN|A Chain A, Human Ornithine Aminotransferase Complexed With L-Canaline Length = 402 | Back alignment and structure |
|
| >pdb|1OAT|A Chain A, Ornithine Aminotransferase Length = 439 | Back alignment and structure |
|
| >pdb|2BYJ|A Chain A, Ornithine Aminotransferase Mutant Y85i Length = 439 | Back alignment and structure |
|
| >pdb|2BYL|A Chain A, Structure Of Ornithine Aminotransferase Triple Mutant Y85i Y55a G320f Length = 439 | Back alignment and structure |
|
| >pdb|2E7U|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-Aminomutase From Thermus Thermophilus Hb8 Length = 424 | Back alignment and structure |
|
| >pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine Delta-Aminotransferase Length = 422 | Back alignment and structure |
|
| >pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus Hb8 Length = 395 | Back alignment and structure |
|
| >pdb|3Q8N|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From Mycobacterium Smegmatis Length = 453 | Back alignment and structure |
|
| >pdb|4FFC|A Chain A, Crystal Structure Of A 4-Aminobutyrate Aminotransferase (Gabt) From Mycobacterium Abscessus Length = 453 | Back alignment and structure |
|
| >pdb|2PB0|A Chain A, Structure Of Biosynthetic N-Acetylornithine Aminotransferase From Salmonella Typhimurium: Studies On Substrate Specificity And Inhibitor Binding Length = 420 | Back alignment and structure |
|
| >pdb|3BS8|A Chain A, Crystal Structure Of Glutamate 1-Semialdehyde Aminotransferase Complexed With Pyridoxamine-5'-Phosphate From Bacillus Subtilis Length = 438 | Back alignment and structure |
|
| >pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii Length = 433 | Back alignment and structure |
|
| >pdb|3NUI|A Chain A, Crystal Structure Of Omega-Transferase From Vibrio Fluvialis Js17 Length = 478 | Back alignment and structure |
|
| >pdb|4E3R|A Chain A, Plp-Bound Aminotransferase Mutant Crystal Structure From Vibrio Fluvialis Length = 473 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* Length = 831 | Back alignment and structure |
|---|
Score = 696 bits (1797), Expect = 0.0
Identities = 469/713 (65%), Positives = 550/713 (77%), Gaps = 22/713 (3%)
Query: 7 HHYPDHHRRILLRLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSP 66
HH+ H ++ R H + P LPL+HPT+ IWSANTSLGKTLVS G+++SFLL
Sbjct: 4 HHHHHHSSGLVPRGSHMKSTSVSPFHLPLNHPTYLIWSANTSLGKTLVSTGIAASFLLQQ 63
Query: 67 TSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSILFSSLFAAKS 126
SS+ K +YLKPIQTG+P DSDSRF+F+KL SLSLRR P S + S
Sbjct: 64 PSSSATKLLYLKPIQTGFPSDSDSRFVFSKLDSLSLRRQIPIS-------------ISNS 110
Query: 127 FLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAER 186
L S + N E+ + N + + EL+CKTL+AWE A+SPHLAAER
Sbjct: 111 VLHSSLPAAKSLGLNVEVSESGMCSLNFRDEKTVTGAPELLCKTLYAWEAAISPHLAAER 170
Query: 187 ESGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLY 246
E V DS V++ + KCL++ +E +SE+ ++LC+VETAGGVASPGPSG+LQCDLY
Sbjct: 171 E-NATVEDSVVLQMIEKCLKEEMECGVKSEKS--DLLCLVETAGGVASPGPSGTLQCDLY 227
Query: 247 RPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVP 306
RPFRLPGILVGDGRLGGISGTI+AYESLKLRGYD+ AVVFEDHGLVNEVPL SYLRN+VP
Sbjct: 228 RPFRLPGILVGDGRLGGISGTIAAYESLKLRGYDIAAVVFEDHGLVNEVPLTSYLRNKVP 287
Query: 307 VLVLPPLPQDSSNDLMEWFDESHNVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFT 366
VLVLPP+P+D S+DL+EWF ES VF +LK M+LA ER++RL M K AGE+FWWPFT
Sbjct: 288 VLVLPPVPKDPSDDLIEWFVESDGVFKALKETMVLANLERLERLNGMAKLAGEVFWWPFT 347
Query: 367 QHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMG 426
QHKLV +E VTVIDSRCGENFS+Y+ N + QQFDACASWWTQGPD T Q ELAR+MG
Sbjct: 348 QHKLVHQETVTVIDSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMG 407
Query: 427 YTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
YTAARFGHVMFPENVYEPAL+CAELLL GVGKGWASR YFSDNGSTAIEIALKMAFRKF
Sbjct: 408 YTAARFGHVMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFC 467
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGL 546
DH +F EK I +KV+AL+GSYHGDTLGAMEAQAPSPYTGFLQQPWY+GRGL
Sbjct: 468 VDH----NFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGL 523
Query: 547 FLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQ 606
FLDPPTVF+ N W +SLPE E+ TF SRDEIF + RD+S LA IYS+Y+S+
Sbjct: 524 FLDPPTVFLSNGSWNISLPESFSEIAPEYG--TFTSRDEIFDKSRDASTLARIYSAYLSK 581
Query: 607 NLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGF 666
+L ++ G++ S +GALIIEPV+H AGGMHMVDPLFQR+LV EC+NRKIPVIFDEVFTGF
Sbjct: 582 HLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGF 641
Query: 667 WRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDSKKRE 719
WRLGVETT +LLGC PDIAC+ KLLTGG++PLA TLAT+AVFDSF GDSK +
Sbjct: 642 WRLGVETTTELLGCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKA 694
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* Length = 429 | Back alignment and structure |
|---|
Score = 196 bits (502), Expect = 4e-56
Identities = 95/367 (25%), Positives = 137/367 (37%), Gaps = 87/367 (23%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQ--G---PDA 415
PFT V + S E + + + D +SWW G P
Sbjct: 13 ILHPFTSMTS--PLPVYPVVS--AEGCELILSDGRRLV----DGMSSWWAAIHGYNHP-- 62
Query: 416 TLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475
+L M HVMF + PA+E L+ + + +D+GS A+E
Sbjct: 63 ----QLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPL-ECVFLADSGSVAVE 117
Query: 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAP-----S 530
+A+KMA + + G+ + L + YHGDT GAM P S
Sbjct: 118 VAMKMALQYWQA--------KGEARQ------RFLTFRNGYHGDTFGAMSVCDPDNSMHS 163
Query: 531 PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEE 590
+ G+L + LF P M EW +E
Sbjct: 164 LWKGYLPE------NLFAPAPQSRMD--------GEW---------------------DE 188
Query: 591 RDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650
RD A + +++ + I A+IIEP+V AGGM M P + + + K C
Sbjct: 189 RDMVGFARLMAAHRHE-------------IAAVIIEPIVQGAGGMRMYHPEWLKRIRKIC 235
Query: 651 QNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDS 710
I +I DE+ TGF R G + PDI C GK LTGG + L+ATL T V ++
Sbjct: 236 DREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAET 295
Query: 711 FVGDSKK 717
Sbjct: 296 ISNGEAG 302
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* Length = 457 | Back alignment and structure |
|---|
Score = 193 bits (492), Expect = 2e-54
Identities = 95/362 (26%), Positives = 144/362 (39%), Gaps = 76/362 (20%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQ--G---PDA 415
W P++ + V + G ++ +D + + DA +SWWT G P
Sbjct: 41 LWHPYSSIGR-EAVSPVVAVAAHGAWLTLIRDGQPIEV---LDAMSSWWTAIHGHGHP-- 94
Query: 416 TLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475
L + + HVMF +EPA A+LL+ G +FSD+GS ++E
Sbjct: 95 ----ALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPAGL-DTVFFSDSGSVSVE 149
Query: 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535
+A KMA + + G+ K +++ +G YHGDT AM
Sbjct: 150 VAAKMALQYW----------RGRGLPGKR---RLMTWRGGYHGDTFLAMSIC-------- 188
Query: 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSD 595
DP +S W L + F + Y+ S+
Sbjct: 189 -------------DPHGGM--HSLWTDVLAAQV-----------FAPQVPRDYDPAYSAA 222
Query: 596 LASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655
+ + + + + A+++EPVV AGGM DP + L C+ ++
Sbjct: 223 FEAQLAQHAGE-------------LAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEV 269
Query: 656 PVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS 715
+IFDE+ TGF R G AD G PDI C GK LTGG + LAATL T V + +
Sbjct: 270 LLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGA 329
Query: 716 KK 717
Sbjct: 330 AG 331
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} PDB: 3drd_A 3du4_A* Length = 448 | Back alignment and structure |
|---|
Score = 183 bits (468), Expect = 3e-51
Identities = 89/371 (23%), Positives = 142/371 (38%), Gaps = 71/371 (19%)
Query: 352 DMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWT- 410
D+ +++ + W PFTQ K +E +I+S G V ++ D +S W
Sbjct: 4 DLIEKSKKHLWLPFTQMK-DYDENPLIIES--GTGIKVKDINGKEYY----DGFSSVWLN 56
Query: 411 -QG---PDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYF 466
G EL + + H PA + AE L+ K +R ++
Sbjct: 57 VHGHRKK------ELDDAIKKQLGKIAHSTLLGMTNVPATQLAETLIDISPKK-LTRVFY 109
Query: 467 SDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA 526
SD+G+ A+EIALKMAF+ + EK K +A+K YHGDT+GA+
Sbjct: 110 SDSGAEAMEIALKMAFQYW----------KNIGKPEKQ---KFIAMKNGYHGDTIGAVSV 156
Query: 527 QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEI 586
LF + + + E I + R E
Sbjct: 157 ---------------GSIELF---------HHVYGPLMFE------SYKAPIPYVYRSES 186
Query: 587 FYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRIL 646
+ + + ++ I AL IE +V A GM ++ + +
Sbjct: 187 GDPDECRDQCLRELAQLLEEH---------HEEIAALSIESMVQGASGMIVMPEGYLAGV 237
Query: 647 VKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNA 706
+ C + +I DEV TGF R G + PD+ GK +TGG +P+A T AT
Sbjct: 238 RELCTTYDVLMIVDEVATGFGRTGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATED 297
Query: 707 VFDSFVGDSKK 717
++ +F D +
Sbjct: 298 IYKAFYDDYEN 308
|
| >3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A {Vibrio fluvialis} Length = 478 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 5e-29
Identities = 65/370 (17%), Positives = 113/370 (30%), Gaps = 84/370 (22%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQ----GPD-- 414
+ FT + + V+ GE + +++ DA + W
Sbjct: 29 SLYGFTDMPSLHQRGTVVVTH--GEGPYIVDVNGRRYL----DANSGLWNMVAGFDHKGL 82
Query: 415 ---ATLQIELARDMGY--TAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDN 469
A Q + + +E L++ + R +++++
Sbjct: 83 IDAAKAQ---YERFPGYHAFFGRMS--------DQTVMLSEKLVEVSPFD-SGRVFYTNS 130
Query: 470 GSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAP 529
GS A + +KM + GK +K K+L +YHG T +
Sbjct: 131 GSEANDTMVKMLWFLH--------AAEGK--PQK---RKILTRWNAYHGVTAVSASM--- 174
Query: 530 SPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYE 589
TG +P+ +F P LP H +
Sbjct: 175 ---TG---KPY---NSVF-GLP------------LPG------FVHLTCPHY------WR 200
Query: 590 ERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH-MVDPLFQRILVK 648
+ + + + +++ L + + + I EPV+ AGG+ FQ I
Sbjct: 201 YGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVM-GAGGVIPPAKGYFQAI--L 257
Query: 649 E-CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAV 707
+ IPVI DEV GF R G PD K LT G P+ A + +
Sbjct: 258 PILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPEL 317
Query: 708 FDSFVGDSKK 717
+
Sbjct: 318 SKRLETAIEA 327
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} Length = 452 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 2e-28
Identities = 65/379 (17%), Positives = 109/379 (28%), Gaps = 110/379 (29%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWT----QGPD-- 414
W + TV E V Q +++ D + W G
Sbjct: 20 VWHGMRPFS---PNSTTVGAK--AEGCWVEDIQGKRYL----DGMSGLWCVNSGYGRKEL 70
Query: 415 ---ATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWA---SRAYFSD 468
A Q + + Y H EPA++ AE L + W +FS+
Sbjct: 71 AEAAYKQ---LQTLSYFPMSQSH--------EPAIKLAEKLNE-----WLGGEYVIFFSN 114
Query: 469 NGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT-----LGA 523
+GS A E A K+A + + G+ + K ++ YHG+T
Sbjct: 115 SGSEANETAFKIARQYY--------AQKGE--PHR---YKFMSRYRGYHGNTMATMAATG 161
Query: 524 MEA-----QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDI 578
+ + + P + + + + +
Sbjct: 162 QAQRRYQYEPFASGFLHVTPPDCYRMPGIERENI-------YDVECVKEVDRVMTWEL-- 212
Query: 579 TFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638
E I A I+EP++ G +
Sbjct: 213 ----------SET----------------------------IAAFIMEPIITGGGILMAP 234
Query: 639 DPLFQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIP 697
+ + E CQ +I DEV GF R G PDI K +T +P
Sbjct: 235 QDYMKAV--HETCQKHGALLISDEVICGFGRTGKAFGFMNYDVKPDIITMAKGITSAYLP 292
Query: 698 LAATLATNAVFDSFVGDSK 716
L+AT ++++F G +
Sbjct: 293 LSATAVKREIYEAFKGKGE 311
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} Length = 449 | Back alignment and structure |
|---|
Score = 116 bits (294), Expect = 5e-28
Identities = 71/384 (18%), Positives = 122/384 (31%), Gaps = 109/384 (28%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQG-------- 412
W P+T ++ +I + E + D+ K D+ + WT G
Sbjct: 19 HWMPYTANRNF-LRDPRLIVA--AEGSWLVDDKGRKVY----DSLSGLWTCGAGHTRKEI 71
Query: 413 PDATLQIELARDMG----YTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSD 468
+A +A+ + ++GH + + AE + + +F+D
Sbjct: 72 QEA-----VAKQLSTLDYSPGFQYGH--------PLSFQLAEKITDLTPGN-LNHVFFTD 117
Query: 469 NGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA-- 526
+GS A+KM + G+ K K++ YHG +
Sbjct: 118 SGSECALTAVKMVRAYW--------RLKGQ--ATKT---KMIGRARGYHGVNIAGTSLGG 164
Query: 527 --------QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDI 578
P L + P ++L + L I H
Sbjct: 165 VNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEG------GIALADELLKLIELHDAS 218
Query: 579 TFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638
I A+ +EP+ + G+ +V
Sbjct: 219 N----------------------------------------IAAVFVEPLA-GSAGV-LV 236
Query: 639 DPL--FQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695
P +R +E C I ++FDEV TGF R G AD G PD+ C K +T G
Sbjct: 237 PPEGYLKRN--REICNQHNILLVFDEVITGFGRTGSMFGADSFGVTPDLMCIAKQVTNGA 294
Query: 696 IPLAATLATNAVFDSFVGDSKKRE 719
IP+ A +A+ ++ +F+
Sbjct: 295 IPMGAVIASTEIYQTFMNQPTPEY 318
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* Length = 460 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 1e-25
Identities = 79/372 (21%), Positives = 131/372 (35%), Gaps = 85/372 (22%)
Query: 361 FWWPFTQHK--LVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQ----GPD 414
F+ P T E ++ GE +V+ + K I DA A + G
Sbjct: 17 FFHPSTHMGTHARGESPTRIMAG--GEGVTVWDNNGRKSI----DAFAGLYCVNVGYGRQ 70
Query: 415 -----ATLQIELARDMGY--TAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFS 467
Q A+++ Y G E ++ A++++ KG SR YF
Sbjct: 71 KIADAIATQ---AKNLAYYHAYVGHGT--------EASITLAKMIIDRAPKG-MSRVYFG 118
Query: 468 DNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQ 527
+GS A E +K+ + + LG+ EK K+++ YHG +
Sbjct: 119 LSGSDANETNIKLIWYYN--------NVLGR--PEKK---KIISRWRGYHGSGVMTGSL- 164
Query: 528 APSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIF 587
TG + F D P V H + +
Sbjct: 165 -----TG---LDLF--HNAF-DLP------------RAP------VLHTEAPYY------ 189
Query: 588 YEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM-VDPLFQRIL 646
+ D S +S + + L + + I A I EP++ GG+ +++I
Sbjct: 190 FRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPIL-GTGGIVPPPAGYWEKI- 247
Query: 647 VKE-CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATN 705
+ + + ++ DEV TGF RLG +D G PD+ K LT PL+ + +
Sbjct: 248 -QAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVAD 306
Query: 706 AVFDSFVGDSKK 717
V+ V S K
Sbjct: 307 RVWQVLVQGSDK 318
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* Length = 459 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 1e-24
Identities = 74/379 (19%), Positives = 125/379 (32%), Gaps = 106/379 (27%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQG-----PD- 414
PFT + + V+ GE ++ + NK I D A W D
Sbjct: 18 HLHPFTDTASLNQAGARVMTR--GEGVYLWDSEGNKII----DGMAGLWCVNVGYGRKDF 71
Query: 415 ---ATLQIELARDMGY--TAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDN 469
A Q ++ + T + H +E + LL + G R +++++
Sbjct: 72 AEAARRQ---MEELPFYNTFFKTTH--------PAVVELSSLLAEVTPAG-FDRVFYTNS 119
Query: 470 GSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA--- 526
GS +++ ++M R + D GK EK ++ YHG T+G
Sbjct: 120 GSESVDTMIRMVRRYW--------DVQGK--PEKK---TLIGRWNGYHGSTIGGASLGGM 166
Query: 527 -------QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDIT 579
P P ++QPW+ G + P + + WL KI+E
Sbjct: 167 KYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDE-------FGVVAARWLEEKILEIGADK 219
Query: 580 FCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639
+ A + EP+ AGG+ +V
Sbjct: 220 ----------------------------------------VAAFVGEPIQ-GAGGV-IVP 237
Query: 640 PL--FQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVI 696
P + I + C+ + ++ DEV GF R G G PD+ K L+ G +
Sbjct: 238 PATYWPEI--ERICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQPDLFTAAKGLSSGYL 295
Query: 697 PLAATLATNAVFDSFVGDS 715
P+ A V + +
Sbjct: 296 PIGAVFVGKRVAEGLIAGG 314
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} Length = 472 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 2e-23
Identities = 73/378 (19%), Positives = 120/378 (31%), Gaps = 105/378 (27%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQG-----PD- 414
PF+ + + EE VI + + + + DA A W +
Sbjct: 23 HLHPFSANNALGEEGTRVITR--ARGVWLNDSEGEEIL----DAMAGLWCVNIGYGRDEL 76
Query: 415 ---ATLQIELARDMGY--TAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDN 469
A Q R++ Y T + H PA+ A+ L + + +F+
Sbjct: 77 AEVAARQ---MRELPYYNTFFKTTH--------VPAIALAQKLAELAPGD-LNHVFFAGG 124
Query: 470 GSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM----- 524
GS A + ++M + G+ EK +++ K +YHG T+ +
Sbjct: 125 GSEANDTNIRMVRTYW--------QNKGQ--PEKT---VIISRKNAYHGSTVASSALGGM 171
Query: 525 ----EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITF 580
P + QP + G +DP + L+ L I+E +
Sbjct: 172 AGMHAQSGLIPDVHHINQPNWWAEGGDMDPEE-------FGLARARELEEAILELGENR- 223
Query: 581 CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDP 640
+ A I EPV AGG+ +V P
Sbjct: 224 ---------------------------------------VAAFIAEPVQ-GAGGV-IVAP 242
Query: 641 L--FQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIP 697
+ I + C I +I DEV GF R G +G P I K L+ G P
Sbjct: 243 DSYWPEI--QRICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPHIMTIAKGLSSGYAP 300
Query: 698 LAATLATNAVFDSFVGDS 715
+ ++ + V D
Sbjct: 301 IGGSIVCDEVAHVIGKDE 318
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* Length = 433 | Back alignment and structure |
|---|
Score = 98.8 bits (247), Expect = 4e-22
Identities = 60/293 (20%), Positives = 101/293 (34%), Gaps = 81/293 (27%)
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
A + H +F E + P ++ A L G RA G+ + E A++MA + +
Sbjct: 72 AGKLDH-LFSEMLSRPVVDLATRLANITPPG-LDRALLLSTGAESNEAAIRMA-KLVT-- 126
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548
GK +++ S+HG T A A T G G
Sbjct: 127 --------GKY--------EIVGFAQSWHGMTGAAASA------TY---SAGRKGVGPA- 160
Query: 549 DPPTVFM------YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSS 602
F Y ++ ++ + E+ Y +S
Sbjct: 161 -AVGSFAIPAPFTYRPRF--------------ERNGAYDYLAELDYAFDLIDRQSS---- 201
Query: 603 YISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEV 662
G + A I EP++ ++GG+ + + L ++C+ R + +I DE
Sbjct: 202 ---------------GNLAAFIAEPIL-SSGGIIELPDGYMAALKRKCEARGMLLILDEA 245
Query: 663 FTGFWRLG----VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
TG R G + G PDI K L G +PLAA + + A+ +
Sbjct: 246 QTGVGRTGTMFACQRD----GVTPDILTLSKTLGAG-LPLAAIVTSAAIEERA 293
|
| >1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A Length = 224 | Back alignment and structure |
|---|
Score = 94.4 bits (235), Expect = 5e-22
Identities = 36/171 (21%), Positives = 61/171 (35%), Gaps = 23/171 (13%)
Query: 154 RISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGLESES 213
R S + V + + E SPH+ + +E G +S V+ + L +
Sbjct: 60 RNSSLQLDY--ATVN--PYTFAEPTSPHIISAQE--GRPIESLVMSAGLRALEQQAD--- 110
Query: 214 ESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYES 273
+VE AGG +P D +LP ILV +LG I+ + +
Sbjct: 111 ---------WVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQV 161
Query: 274 LKLRGYDVVAVVF--EDHGLVNEVPLMSYLRNR--VPVL-VLPPLPQDSSN 319
++ G + V M+ L P+L +P L ++ N
Sbjct: 162 IQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLLGEIPWLAENPEN 212
|
| >1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A Length = 224 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 3e-04
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSD 89
+ + +T +GKT+ S L + +A + KP+ +G +
Sbjct: 3 RYFVTGTDTEVGKTVASCALLQAA-----KAAGYRTAGYKPVASGSEKTPE 48
|
| >3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp} Length = 228 | Back alignment and structure |
|---|
Score = 94.0 bits (234), Expect = 8e-22
Identities = 27/184 (14%), Positives = 66/184 (35%), Gaps = 26/184 (14%)
Query: 154 RISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGLESES 213
+ ++ + L ++ +AV+PH+ A + IE L + + D +
Sbjct: 61 NAYKHKFTA--AEIN--LISFNQAVAPHIIAAKT-----KVDISIENLKQFIEDKYNQDL 111
Query: 214 ESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYES 273
+ + +E AGG+ +P + Q DL + ++P +LV ++G I+ T+
Sbjct: 112 D--------ILFIEGAGGLLTPYSDHTTQLDLIKALQIPVLLVSAIKVGCINHTLLTINE 163
Query: 274 LKLRGYDVVAVVF--EDHGLVNEVPLMSYLRNR--VPVL-VLPPLPQDSS----NDLMEW 324
L + + D + ++ + + + ++
Sbjct: 164 LNRHNIKLAGWIANCNDSNIKYIDEQINTIEELSGYKCSAKISRNADYLDFIDLSKILIS 223
Query: 325 FDES 328
+E+
Sbjct: 224 PEEN 227
|
| >3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp} Length = 228 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 2e-05
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSD 89
F I +T +GKT +S L N K + LKP+ +G S+
Sbjct: 6 KFFIIGTDTEVGKTYISTKLIEVC-----EHQNIKSLCLKPVASGQSQFSE 51
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} Length = 419 | Back alignment and structure |
|---|
Score = 96.5 bits (241), Expect = 2e-21
Identities = 56/291 (19%), Positives = 97/291 (33%), Gaps = 69/291 (23%)
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
+ H + P LE A+ L+ + + +FS++G+ AIE ++K+ +
Sbjct: 72 MQKLAHAAANDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVV-KN---- 126
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQA-PSPY-TGFLQQPWYSGRGL 546
T + ++A G +HG T G++ A + + P+
Sbjct: 127 ------------TGRK---YIIAFLGGFHGRTFGSISLTASKAVQRSIV--GPF------ 163
Query: 547 FLDPPTVFM--YNSKWILSLPEWLYSKIVEHKDITFCS-RDEIFYEERDSSDLASIYSSY 603
P V Y + + Y E + D IF ++A
Sbjct: 164 ---MPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVA------ 214
Query: 604 ISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVF 663
+ EP + GG + F L K + I ++ DEV
Sbjct: 215 ------------------GIFFEP-IQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQ 255
Query: 664 TGFWRLG----VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDS 710
G R G +E VPD+ K L GG++P+ AT+ +
Sbjct: 256 MGLGRTGKLFAIEN----FNTVPDVITLAKALGGGIMPIGATIFRKDLDFK 302
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, pyridoxal phosphate, PSI-2, protein structure initiative; 1.70A {Deinococcus radiodurans} Length = 430 | Back alignment and structure |
|---|
Score = 96.1 bits (240), Expect = 3e-21
Identities = 63/297 (21%), Positives = 98/297 (32%), Gaps = 81/297 (27%)
Query: 427 YTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
++F + E A L + VG R + GS A E A+K+A R++
Sbjct: 64 VHGSQFSS--------DVLEEYAGRLARFVGLPT-FRFWAVSGGSEATESAVKLA-RQY- 112
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGL 546
+ + + KV+ SYHG +LG++ A +G
Sbjct: 113 --------HVERGEPGRF---KVITRVPSYHGASLGSLAA------SG---MGARRELYT 152
Query: 547 FLDPPTVF-----MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYS 601
L P + ++ E L + + T
Sbjct: 153 PLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGPET---------------------- 190
Query: 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM-VDPLFQRILVKE-CQNRKIPVIF 659
+ A + EPVV A+ ++R+ ++ C I I
Sbjct: 191 ------------------VAAFMAEPVVGASDAALAPAPGYYERV--RDICDEAGIIFIA 230
Query: 660 DEVFTGFWRLGVETTAD-LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS 715
DEV +G R G G PDIA GK L G PLA LA V+++ +G S
Sbjct: 231 DEVMSGMGRCGSPLALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGS 287
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A Length = 451 | Back alignment and structure |
|---|
Score = 93.4 bits (233), Expect = 3e-20
Identities = 61/289 (21%), Positives = 97/289 (33%), Gaps = 67/289 (23%)
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
F H F YE + E L + R+ ++GS A+E A+K+A R +
Sbjct: 90 VGDFTHTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIA-RSHT-- 146
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548
K V+A +YHG T M T + Y G
Sbjct: 147 --------HKP--------AVVAFDHAYHGRTNLTMAL------TA--KVMPYK-DGFGP 181
Query: 549 DPPTVFM--YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQ 606
P ++ + + + + E + + ++ + +LA
Sbjct: 182 FAPEIYRAPLSYPFRDAEFGKELATDGE---LAAKRAITVIDKQIGADNLA--------- 229
Query: 607 NLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGF 666
A++IEP+ GG + F L+ C+ + I DEV TGF
Sbjct: 230 ---------------AVVIEPI-QGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGF 273
Query: 667 WRLG----VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
R G E G PD+ K + GG+ PL+A + DS
Sbjct: 274 ARTGAMFACEH----EGIDPDLIVTAKGIAGGL-PLSAVTGRAEIMDSP 317
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} Length = 476 | Back alignment and structure |
|---|
Score = 93.4 bits (233), Expect = 3e-20
Identities = 71/381 (18%), Positives = 115/381 (30%), Gaps = 107/381 (28%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQG-----PD- 414
P + + + A V+ E V+ + + I D A W +
Sbjct: 22 ILLPAQEMAKLGKSAQPVLTH--AEGIYVHTEDGRRLI----DGPAGMWCAQVGYGRREI 75
Query: 415 ---ATLQI-ELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNG 470
Q L + PA AE + +R +F+ G
Sbjct: 76 VDAMAHQAMVLP---YASPWYMAT--------SPAARLAEKIATLTPGD-LNRIFFTTGG 123
Query: 471 STAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA---- 526
STA++ AL+ + + LG+ +K +++ YHG T
Sbjct: 124 STAVDSALRFSEFYN--------NVLGR--PQKK---RIIVRYDGYHGSTALTAACTGRT 170
Query: 527 ------QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITF 580
FL P ++ L + +I T
Sbjct: 171 GNWPNFDIAQDRISFLSSPNP-RHAGNRSQEA-------FLDDLVQEFEDRIESLGPDT- 221
Query: 581 CSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDP 640
I A + EP++ A+GG+ ++ P
Sbjct: 222 ---------------------------------------IAAFLAEPIL-ASGGV-IIPP 240
Query: 641 L--FQRILVKE-CQNRKIPVIFDEVFTGFWRLGVETTAD-LLGCVPDIACYGKLLTGGVI 696
R K C+ I I DEV TGF R G ++ + G VPDI + K +T G +
Sbjct: 241 AGYHARF--KAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIITFAKGVTSGYV 298
Query: 697 PLAATLATNAVFDSFVGDSKK 717
PL + AV G++ K
Sbjct: 299 PLGGLAISEAVLARISGENAK 319
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} Length = 453 | Back alignment and structure |
|---|
Score = 93.0 bits (232), Expect = 3e-20
Identities = 70/291 (24%), Positives = 97/291 (33%), Gaps = 76/291 (26%)
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
A F H F YE ++ AELL R ++G+ A+E A+K+A R +
Sbjct: 93 ATHFTHTCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVA-RLAT-- 149
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQA-PSPY-TGFLQQPWYSG--R 544
G+ V+A +YHG T M A PY + F P+ R
Sbjct: 150 --------GRP--------AVVAFDNAYHGRTNLTMALTAKSMPYKSQF--GPFAPEVYR 191
Query: 545 GLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYI 604
P + L+ E I + + LA
Sbjct: 192 MPASYP-----LRDEPGLTGEEAARRAI------------SRIETQIGAQSLA------- 227
Query: 605 SQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT 664
A+IIEP+ GG + P F L + I DEV T
Sbjct: 228 -----------------AIIIEPI-QGEGGFIVPAPGFLATLTAWASENGVVFIADEVQT 269
Query: 665 GFWRLG----VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
GF R G E G VPDI K + GG +PL+A + D+
Sbjct: 270 GFARTGAWFASEH----EGIVPDIVTMAKGIAGG-MPLSAVTGRAELMDAV 315
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* Length = 426 | Back alignment and structure |
|---|
Score = 92.6 bits (231), Expect = 4e-20
Identities = 71/287 (24%), Positives = 103/287 (35%), Gaps = 71/287 (24%)
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
+ H F YEP LE E++ Q V +A + GS A+E A+K+A R +
Sbjct: 70 LKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIA-RAAT-- 126
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548
+ +A G+YHG T + TG + YS G+ L
Sbjct: 127 --------KRS--------GTIAFSGAYHGRTHYTLAL------TG--KVNPYS-AGMGL 161
Query: 549 DPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNL 608
P V+ P L+ + S IF + D+A
Sbjct: 162 MPGHVYR------ALYPCPLHGISEDD---AIASIHRIFKNDAAPEDIA----------- 201
Query: 609 LQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR 668
A++IEPV GG + P F + L C I +I DEV +G R
Sbjct: 202 -------------AIVIEPV-QGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGR 247
Query: 669 LG----VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
G +E +G PD+ + K + GG PLA V D+
Sbjct: 248 TGTLFAMEQ----MGVAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAV 289
|
| >3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A* Length = 251 | Back alignment and structure |
|---|
Score = 88.7 bits (220), Expect = 7e-20
Identities = 33/178 (18%), Positives = 66/178 (37%), Gaps = 25/178 (14%)
Query: 161 SSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGLESESESERGKM 220
+ V++L L + + ++P AAE G+ ++ + + + + D L+
Sbjct: 82 AGVTQLAG--LARYPQPMAPAAAAEHA--GMALPAR--DQIVRLIAD-LDRPGR------ 128
Query: 221 EILCIVETAGGVASP-GPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGY 279
L +VE AGG+ G D+ ++V LG ++ T E+L +
Sbjct: 129 --LTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTADLGTLNHTKLTLEALAAQQV 186
Query: 280 DVVAVVF----EDHGLVNE-----VPLMSYLRNRVPVLVLPPLPQDSSNDLMEWFDES 328
+V + GLV + ++ +R +P D + FD +
Sbjct: 187 SCAGLVIGSWPDPPGLVAASNRSALARIAMVRAALPAGAASLDAGDFAAMSAAAFDRN 244
|
| >3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A* Length = 251 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 2e-06
Identities = 17/71 (23%), Positives = 24/71 (33%), Gaps = 13/71 (18%)
Query: 27 HPQPLDLPLSH--------PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78
H L + + T +GKT+V A L+S+ A K
Sbjct: 8 HHHSSGLQGTENLYFQSHMTILVVTGTGTGVGKTVVCAALASAA-----RQAGIDVAVCK 62
Query: 79 PIQTGYPHDSD 89
P+QTG D
Sbjct: 63 PVQTGTARGDD 73
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* Length = 439 | Back alignment and structure |
|---|
Score = 90.7 bits (226), Expect = 2e-19
Identities = 60/293 (20%), Positives = 84/293 (28%), Gaps = 79/293 (26%)
Query: 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 488
AA PA+ AE LL + +F +GS A E A + K +
Sbjct: 72 AANPAGATILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAI-VKAT-- 128
Query: 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQA-PSPYTGFLQQPWYSGRGLF 547
G+ V+A G+YHG T+G+M
Sbjct: 129 --------GRS--------GVIAFAGAYHGCTVGSMAFSGHSVQADAAK----------- 161
Query: 548 LDPPTVF--MYNSKWILSLPEWLYSKIVEHKDITFCSRD-EIFYEERDSSDLASIYSSYI 604
+ Y Y + +
Sbjct: 162 --ADGLILLPYPDP---------YRPYRNDPTGDAILTLLTEKLAAVPAGSIG------- 203
Query: 605 SQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT 664
A IEP+ + GG+ + F R C+ I V+ DEV
Sbjct: 204 -----------------AAFIEPI-QSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKV 245
Query: 665 GFWRLG----VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713
G R G E G VPDI GK L GG +PL+A +A + D
Sbjct: 246 GLARSGRLHCFEH----EGFVPDILVLGKGLGGG-LPLSAVIAPAEILDCASA 293
|
| >3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A Length = 242 | Back alignment and structure |
|---|
Score = 85.3 bits (211), Expect = 9e-19
Identities = 25/158 (15%), Positives = 51/158 (32%), Gaps = 18/158 (11%)
Query: 172 FAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGG 231
+ + + +P +A + E D + L + L + + L IVE AGG
Sbjct: 95 YRYHKVSAPLIAQQEEDPNAPID---TDNLTQRLHN-FTKTYD--------LVIVEGAGG 142
Query: 232 VASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVF----E 287
+ P D + +L+ LG I+ + LK D +
Sbjct: 143 LCVPITLEENMLDFALKLKAKMLLISHDNLGLINDCLLNDFLLKSHQLDYKIAINLKGNN 202
Query: 288 DHGLVNEVPLMSYLRNR--VPVLVLPPLPQDSSNDLME 323
+P + R P+++ + + ++
Sbjct: 203 TAFHSISLPYIELFNTRSNNPIVIFQQSLKVLMSFALK 240
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A Length = 449 | Back alignment and structure |
|---|
Score = 87.3 bits (217), Expect = 2e-18
Identities = 52/293 (17%), Positives = 85/293 (29%), Gaps = 61/293 (20%)
Query: 429 AARFGHVMFP---ENVY-EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRK 484
A + +VY E + +G +F + G+ A+E ALK A
Sbjct: 83 AELMQAALNKPSNSDVYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAA-FD 141
Query: 485 FSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGR 544
+ H + + +VL L+G++HG + + T +P + R
Sbjct: 142 WKSRHN------QAHGIDPALGTQVLHLRGAFHGRSGYTLSL------TN--TKPTITAR 187
Query: 545 GLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYI 604
D P + P DE ++ L
Sbjct: 188 FPKFDWP---------RIDAPYMRP------------GLDEPAMAALEAEALRQA----- 221
Query: 605 SQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT 664
+ + + + EP + GG P F + + C +IFDEV T
Sbjct: 222 -RAAFETRPHDI----ACFVAEP-IQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQT 275
Query: 665 GFWRLGVETTADL-----LGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV 712
G T L PDI +GK + + A V
Sbjct: 276 GCGL-----TGTAWAYQQLDVAPDIVAFGKKTQVCGVMAGRRVDEVADNVFAV 323
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* Length = 472 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 4e-14
Identities = 50/306 (16%), Positives = 89/306 (29%), Gaps = 61/306 (19%)
Query: 419 IELARDMGYTAARFGHVMFPENVYEPALE-CAELLLQGVGKGWASRAYFSDNGSTAIEIA 477
++L + + E +E E LL KG S+ GS + E A
Sbjct: 85 VKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKG-MSQLITMACGSCSNENA 143
Query: 478 LKMAF-------RKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS 530
K F R S + ++ + C + +L+ G++HG T+G +
Sbjct: 144 FKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLAT---- 199
Query: 531 PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEE 590
T + + D P K+ L ++ E + + D I
Sbjct: 200 --TH--SKAIHKIDIPSFDWPIAPFPRLKYPLEEFVK-ENQQEEARCLEE-VEDLIVKYR 253
Query: 591 RDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650
+ +A +I+EP + + GG + F R L
Sbjct: 254 KKKKTVA------------------------GIIVEP-IQSEGGDNHASDDFFRKLRDIS 288
Query: 651 QNRKIPVIFDEVFTGFWR---------LGVETTADLLGCVPDIACYGKLLTGGVIPLAAT 701
+ + DEV TG G++ D+ + K + G
Sbjct: 289 RKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDD-------PADVMTFSKKMMTGG-FFHKE 340
Query: 702 LATNAV 707
Sbjct: 341 EFRPNA 346
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} Length = 434 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 1e-10
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
+ A+++EP+ G +V+P F + + VI+DEV T F R DL
Sbjct: 203 VAAILVEPI---VGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMYGGAQDL 258
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
LG PD+ GK++ GG +P+ A
Sbjct: 259 LGVTPDLTALGKVIGGG-LPIGA 280
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} Length = 429 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 1e-10
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
+ +I+EPV AG M+ + PL F L C +I DEV TGF R+ + D
Sbjct: 201 VACIIVEPV---AGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVALAGAQDY 256
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
+PD+ C GK++ GG +P+ A
Sbjct: 257 YHVIPDLTCLGKIIGGG-MPVGA 278
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* Length = 427 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 1e-10
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
I +I+EP+ G + P F L + ++FDEV TGF R+ +
Sbjct: 200 IAGVILEPI---VGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIAYGGVQEK 255
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
G PD+ GK++ GG +P+ A
Sbjct: 256 FGVTPDLTTLGKIIGGG-LPVGA 277
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} Length = 453 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 1e-10
Identities = 25/83 (30%), Positives = 32/83 (38%), Gaps = 7/83 (8%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
I A I EPV + F R + + I DEV +GF R+G L
Sbjct: 202 IAAFIAEPV---GSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNHGMQAL 257
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
L PD+ C K GG +P
Sbjct: 258 LDVQPDLTCLAKASAGG-LPGGI 279
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} Length = 424 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 2e-10
Identities = 33/83 (39%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
I A+I EPV G ++ P F + L E + + +I DEV TGF RL +L
Sbjct: 200 IAAIIFEPV---VGNAGVLVPTEDFLKAL-HEAKAYGVLLIADEVMTGF-RLAFGGATEL 254
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
LG PD+ GK+L GG +P AA
Sbjct: 255 LGLKPDLVTLGKILGGG-LPAAA 276
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} PDB: 3bs8_A* Length = 429 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 2e-10
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
I +I+EPV AG M +V P F L + + +IFDEV TGF R+
Sbjct: 201 IACVIVEPV---AGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVAYNCGQGY 256
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
G PD+ C GK++ GG +P+ A
Sbjct: 257 YGVTPDLTCLGKVIGGG-LPVGA 278
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* Length = 434 | Back alignment and structure |
|---|
Score = 62.5 bits (153), Expect = 2e-10
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
I +I+EPV ++ P F L + + +I DEV TGF RLG+E
Sbjct: 204 IAGVIVEPV---IANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGLEGAQGY 259
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
DI GK++ GG P+ A
Sbjct: 260 FNIEGDIIVLGKIIGGG-FPVGA 281
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* Length = 465 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 5e-09
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 620 IGALIIEPVVHAAGGMHMVDPL--FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677
A+++EP+ G V F +L E +IFDEV T RL ++
Sbjct: 234 CAAILVEPM---LGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMTS--RLSGGGAQEM 288
Query: 678 LGCVPDIACYGKLLTGGVIPLAA 700
LG D+ GK + GG + A
Sbjct: 289 LGISADLTTLGKYIGGG-MSFGA 310
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.7 bits (141), Expect = 6e-09
Identities = 89/666 (13%), Positives = 168/666 (25%), Gaps = 194/666 (29%)
Query: 7 HHYPDHHRRILLRLFHHSTFHPQPLD------LPLSHPTFQIWSANTSLGKTLVSAGLSS 60
HH HH HH F L + F +
Sbjct: 1 HH---HH--------HHMDFETGEHQYQYKDILSVFEDAFV---------DNFDCKDVQD 40
Query: 61 SFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKL---PSLSLRRNFPSSLILSNSIL 117
S S + + S + LF L +++ L ++ L
Sbjct: 41 -MPKSILSKEEIDHIIMSK-----DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL 94
Query: 118 FSSL--------FAAKSFLSSRDLPFQ-PQKFNSEMYDLNFREEN----RISGEEDSSVS 164
S + + ++ RD + Q F Y+++ R + R + E
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK--YNVS-RLQPYLKLRQALLELRPAK 151
Query: 165 ELV------C-KTLFAWEEAVSPHLAAERESGGVVGDSKVIE---------TLGKCLRDG 208
++ KT W +A + V KV L C
Sbjct: 152 NVLIDGVLGSGKT---W-------VALD-----VCLSYKVQCKMDFKIFWLNLKNCNSPE 196
Query: 209 LESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTI 268
E ++ L P+ + + D +L I L +
Sbjct: 197 TVLE------MLQKLLYQID--------PNWTSRSDHSSNIKLR-IHSIQAELRRL---- 237
Query: 269 SAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDSSN-DLMEWFDE 327
LK + Y+ +V + V + +L+ + D +
Sbjct: 238 -----LKSKPYENCLLVLLN---VQNAKAWNAFNLSCKILLTT---RFKQVTDFLSAATT 286
Query: 328 SHNVFDSLKNIMLLAYSERIQRLC------DMPKRAGELFWWPFTQHKLVPEEAVTVIDS 381
+H D + + + D+P+ P ++ E + D
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN--PRR-LSIIAES---IRDG 340
Query: 382 RCG-ENFSVYQ-DQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPE 439
+N+ D+ I + L+ R M + +FP
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNV------------LEPAEYRKM-FDRL----SVFPP 383
Query: 440 NVYEPA--L---------ECAELLLQG-VGKGWASRAYFSDNGSTAIEIALKMAFRKFSF 487
+ + P L +++ + + I I
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK----QPKESTISI----------- 428
Query: 488 DHEVLVDFLGKDTTEKCIELKVLA---LKGSYHGDTLGAMEAQAPSPYTGFLQQPWYS-- 542
+ ++ K E + ++ + ++ D L P + +YS
Sbjct: 429 -PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI------PPYLDQY----FYSHI 477
Query: 543 GRGLF-LDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYS 601
G L ++ P L +L KI H + + I L Y
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDF-RFLEQKI-RHDSTAWNASGSIL---NTLQQL-KFYK 531
Query: 602 SYISQN 607
YI N
Sbjct: 532 PYICDN 537
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 4e-07
Identities = 80/583 (13%), Positives = 162/583 (27%), Gaps = 165/583 (28%)
Query: 141 NSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIET 200
+ E + ++ ++ +S ED+ V CK + ++ L+ E E ++ +
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDV---QDMPKSILSKE-EIDHIIMSKDAVSG 63
Query: 201 LGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCD---LYRPFRLPGILVG 257
L L S+ E +V+ L+ + L P +
Sbjct: 64 T-LRLFWTLLSKQEE---------MVQKFVE-------EVLRINYKFLMSPIKT------ 100
Query: 258 DGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQDS 317
S Y + R Y+ V + + V+ + LR L +
Sbjct: 101 --EQRQPSMMTRMYIEQRDRLYNDNQVFAKYN--VSRLQPYLKLRQA--------LLELR 148
Query: 318 SNDL-----MEWFDESHNVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVP 372
+ ++ D + ++Q C M ++FW
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLS-------YKVQ--CKMD---FKIFW---------- 186
Query: 373 EEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432
+ + C +V + + + Q D WT D + I+L R
Sbjct: 187 ---LNL--KNCNSPETVLEMLQK--LLYQID---PNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 433 GHVMFPENVYEPALECAELLLQGVGKGWASRA--YF---------------SDNGSTAIE 475
+ YE L L+L V ++A F +D S A
Sbjct: 237 ---LLKSKPYENCL----LVLLNV---QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286
Query: 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGS-YHGDTLGAMEAQAPSPYTG 534
+ + + + + L K + +L L + + + +
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 535 FLQQPWYSGRGL---------FLDPP---------TVFMYNSKWILSLPE------WLYS 570
+ + L L+P +VF ++ +P W
Sbjct: 347 WKH---VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH----IPTILLSLIWFDV 399
Query: 571 KIVEHKDIT--FCSRDEIFYEERDSSDLA-SIYSSYISQNLLQNPGLKVSGCIGALIIEP 627
+ + + E+ + SI S Y+ ++ E
Sbjct: 400 IKSDVMVVVNKLHKYSLV---EKQPKESTISIPSIYLE-LKVKLEN------------EY 443
Query: 628 VVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG 670
+H + +VD I + IP D+ F + +G
Sbjct: 444 ALHRS----IVDHY--NIPKTFDSDDLIPPYLDQYF--YSHIG 478
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.2 bits (124), Expect = 6e-07
Identities = 76/475 (16%), Positives = 133/475 (28%), Gaps = 135/475 (28%)
Query: 289 HGLVNEVPLMSY-LRNRVPVLVLPPLPQDSSNDLMEWFDESHNVFDSLKNIMLLAYSERI 347
H + E Y ++ + V + FD V D K+I+ + I
Sbjct: 5 HHMDFETGEHQYQYKDILSVF-EDAFVDN--------FDCKD-VQDMPKSILSKEEIDHI 54
Query: 348 QRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKN-KFIGQQFDACA 406
D LFW ++ EE V + F + N KF+
Sbjct: 55 IMSKDAVSGTLRLFWTLLSK----QEEMV--------QKFVEEVLRINYKFLMSPI---- 98
Query: 407 SWWTQGPDA-TLQIELARDMGYTAARFGHVMFPENVY--EPALECAELLLQ--------- 454
+ P T RD Y V NV +P L+ + LL+
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYND---NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
Query: 455 ----GVGKGW-ASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKV 509
G GK W A S ++ KM F+ F + L + + + +
Sbjct: 156 DGVLGSGKTWVALDVCLSY------KVQCKMDFKIFWLN-------LKNCNSPETVLEML 202
Query: 510 LALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY-NSKWILSLPE-W 567
L Y D + S + R L P Y N +L L
Sbjct: 203 QKL--LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP----YENC--LLVLLNVQ 254
Query: 568 LYSKIVEHKDITFC-----SRD-------------EIFYEERDSS----DLASIYSSYIS 605
+K +++ C +R I + + ++ S+ Y+
Sbjct: 255 -NAKAWNAFNLS-CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 606 --------QNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM---------------VDPLF 642
+ L NP ++S I I + + H+ ++P
Sbjct: 313 CRPQDLPREVLTTNP-RRLSI-IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
Query: 643 QRILVKEC----QNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLL 691
R + + IP + + W +++ V + + L
Sbjct: 371 YRKMFDRLSVFPPSAHIPT---ILLSLIWFDVIKS------DVMVVVNKLHKYSL 416
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 4e-04
Identities = 38/202 (18%), Positives = 61/202 (30%), Gaps = 59/202 (29%)
Query: 2 LRLRRH--HYPDHHRRIL-----LRLFHHSTFHPQPLDLPL-SHPTFQIWSANTSLGKTL 53
L L+ + HR I+ + F P LD SH +G L
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH-----------IGHHL 481
Query: 54 VSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILS 113
+ L V+L D RFL K+ S N S++
Sbjct: 482 KNIEHPERMTLFRM-------VFL-----------DFRFLEQKIRHDSTAWNASGSIL-- 521
Query: 114 NSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFA 173
N L K ++ D P + N+ + L EEN I + ++L+
Sbjct: 522 N--TLQQLKFYKPYICDND-PKYERLVNAILDFLPKIEENLICSKY----TDLL------ 568
Query: 174 WEEAVSPHLAAERESGGVVGDS 195
+A E + ++
Sbjct: 569 -------RIALMAEDEAIFEEA 583
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} Length = 392 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 2e-08
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 11/97 (11%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
A I+EP+ G+++ F + ++ C+ + + DE+ TG R T +
Sbjct: 183 TAAFILEPI-QGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGR-----TGKVFA 236
Query: 680 C-----VPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
C PD+ GK L GGV P++ A + F
Sbjct: 237 CDWDNVTPDMYILGKALGGGVFPISCAAANRDILGVF 273
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* Length = 420 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 3e-08
Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 13/106 (12%)
Query: 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT 674
+ A+++EP+ GG+ P F + L C + ++FDEV G R G
Sbjct: 197 VMDDHTCAVVVEPI-QGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTG---- 251
Query: 675 ADL-----LGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF-VGD 714
DL G PDI K L GG P++A L T + +F VG
Sbjct: 252 -DLFAYMHYGVTPDILTSAKALGGGF-PVSAMLTTQEIASAFHVGS 295
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* Length = 420 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 4e-07
Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 22/110 (20%)
Query: 429 AARFGHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
H NV+ EPAL L + +A R F ++G+ A E A K+A R ++
Sbjct: 86 GETLWHT---SNVFTNEPALRLGRKL---IDATFAERVLFMNSGTEANETAFKLA-RHYA 138
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT-GF 535
+ + K K++A ++HG +L + Y+ GF
Sbjct: 139 CV---------RHSPFKT---KIIAFHNAFHGRSLFTVSVGGQPKYSDGF 176
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A Length = 433 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 4e-08
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC- 680
A I+EP+ G+ + + + + C+ + + DEV TG R T LL
Sbjct: 215 AFIVEPI-QGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGR-----TGKLLCVH 268
Query: 681 ----VPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
PD+ GK L+GG P++A LA + +
Sbjct: 269 HYNVKPDVILLGKALSGGHYPISAVLANDDIMLVI 303
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* Length = 439 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 5e-08
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
+ A ++EP+ G+ + DP + + + C ++ I DE+ TG R G D
Sbjct: 224 VAAFMVEPI-QGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYEN 282
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
PDI GK L+GG+ P++A L + + +
Sbjct: 283 VRPDIVLLGKALSGGLYPVSAVLCDDDIMLTI 314
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} Length = 375 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 2e-07
Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 13/99 (13%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL---- 677
+IIE + GG++ F L + C+ + + +I DEV TG R G +
Sbjct: 175 GIIIEVI-QGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTG-----EFYAYQ 228
Query: 678 -LGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF-VGD 714
PD+ K L GGV P+ A LA V SF G
Sbjct: 229 HFNLKPDVIALAKGLGGGV-PIGAILAREEVAQSFTPGS 266
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} Length = 375 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 2e-06
Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 22/110 (20%)
Query: 429 AARFGHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
+ HV N+Y E A L++ + +F+++G+ ++E A+K+A RK+
Sbjct: 57 VEKLLHV---SNLYENPWQEELAHKLVKHFW--TEGKVFFANSGTESVEAAIKLA-RKYW 110
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT-GF 535
D GK+ + ++ + S+HG T G++ A + GF
Sbjct: 111 RDK-------GKNKWK------FISFENSFHGRTYGSLSATGQPKFHKGF 147
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} Length = 395 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 3e-07
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 20/99 (20%)
Query: 440 NVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497
N+Y E A+ L R +F+++G+ +IE A+K A RK++F+ G
Sbjct: 73 NLYYNENIAAAAKNL---AKASALERVFFTNSGTESIEGAMKTA-RKYAFNK-------G 121
Query: 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT-GF 535
+ +A K S+HG TLGA+ A Y F
Sbjct: 122 VKGGQ------FIAFKHSFHGRTLGALSLTANEKYQKPF 154
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} Length = 395 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 6e-07
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 12/91 (13%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL---- 677
A+I+E V GG++ + F + L K C + I +I DE+ G R +
Sbjct: 182 AIILESV-QGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGR-----SGKFFAYE 235
Query: 678 -LGCVPDIACYGKLLTGGVIPLAATLATNAV 707
+PDI K L G+ + A + V
Sbjct: 236 HAQILPDIMTSAKALGCGL-SVGAFVINQKV 265
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* Length = 397 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 3e-07
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 20/99 (20%)
Query: 440 NVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497
N++ P +E AELL + + +F++ G+ A E A+K+A RK+
Sbjct: 77 NLFWNRPQMELAELL---SKNTFGGKVFFANTGTEANEAAIKIA-RKYGKKK-------S 125
Query: 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT-GF 535
+ +L+ S+HG TLG++ A Y F
Sbjct: 126 EKKYR------ILSAHNSFHGRTLGSLTATGQPKYQKPF 158
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* Length = 397 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 7e-07
Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 12/91 (13%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL---- 677
A+ +EP+ G+ F K C ++FDEV G R G L
Sbjct: 186 AVFLEPI-QGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTG-----KLFAYQ 239
Query: 678 -LGCVPDIACYGKLLTGGVIPLAATLATNAV 707
G VPD+ K L GGV P+ A +
Sbjct: 240 KYGVVPDVLTTAKGLGGGV-PIGAVIVNERA 269
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* Length = 395 | Back alignment and structure |
|---|
Score = 52.1 bits (126), Expect = 4e-07
Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 25/100 (25%)
Query: 429 AARFGHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486
A + E L + +R + ++G+ A E ALK A R +
Sbjct: 74 AETLMAM---PQTLPTPMRGEFYRTLTAILPPE-LNRVFPVNSGTEANEAALKFA-RAHT 128
Query: 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA 526
+ + A + G T+G++
Sbjct: 129 GRKKFV------------------AAMRGFSGRTMGSLSV 150
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* Length = 395 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 5e-07
Identities = 31/95 (32%), Positives = 39/95 (41%), Gaps = 12/95 (12%)
Query: 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC- 680
A+I+EPV GG+ P F R + Q + +I DE+ TG R G
Sbjct: 188 AVILEPV-QGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTG-----KRFAFE 241
Query: 681 ----VPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
VPDI K L GGV PL + V S
Sbjct: 242 HFGIVPDILTLAKALGGGV-PLGVAVMREEVARSM 275
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 719 | |||
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 100.0 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 100.0 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 100.0 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 100.0 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 100.0 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 100.0 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 100.0 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 100.0 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 100.0 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 100.0 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 100.0 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 100.0 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 100.0 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 100.0 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 100.0 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 100.0 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 100.0 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 100.0 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 100.0 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 100.0 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 100.0 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 100.0 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 100.0 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 100.0 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 100.0 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 100.0 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 100.0 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 100.0 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 100.0 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 100.0 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 100.0 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 100.0 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 100.0 | |
| 3fgn_A | 251 | Dethiobiotin synthetase; biotin biosynthesis, BIOD | 100.0 | |
| 3qxc_A | 242 | Dethiobiotin synthetase; DTBS, structural genomics | 100.0 | |
| 3of5_A | 228 | Dethiobiotin synthetase; structural genomics, cent | 100.0 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 100.0 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.98 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.97 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.96 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.95 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 99.94 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 99.87 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 99.86 | |
| 1byi_A | 224 | Dethiobiotin synthase; biotin synthesis, cyclo-lig | 99.85 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 99.82 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 99.81 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 99.8 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 99.77 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 99.74 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 99.74 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 99.71 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 99.69 | |
| 2obn_A | 349 | Hypothetical protein; structural genomics, joint c | 99.67 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 99.65 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 99.65 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 99.64 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 99.64 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.61 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 99.41 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 99.61 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 99.6 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 99.56 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 99.56 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 99.55 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 99.54 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 99.53 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 99.53 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 99.53 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.52 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 99.52 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 99.52 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 99.52 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 99.52 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 99.52 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 99.52 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 99.52 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 99.51 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 99.51 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 99.5 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 99.5 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 99.5 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 99.5 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 99.49 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 99.49 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.49 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 99.49 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 99.49 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 99.48 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 99.48 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 99.47 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.46 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.46 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 99.46 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 99.45 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 99.45 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 99.45 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 99.45 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 99.45 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.44 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 99.43 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 99.42 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 99.42 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.41 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 99.4 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 99.39 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.39 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 99.38 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 99.38 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 99.37 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.37 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 99.37 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 99.35 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 99.34 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 99.34 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 99.33 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.32 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.32 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.31 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.31 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.31 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.31 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.31 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 99.3 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.29 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 99.28 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.28 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.27 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 99.27 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 99.26 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 99.26 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.25 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 99.25 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.24 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.24 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 99.23 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 99.23 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.23 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.23 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.23 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.22 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 99.22 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.21 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 99.21 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.21 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.2 | |
| 2g0t_A | 350 | Conserved hypothetical protein; structural genomic | 99.2 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.19 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 99.19 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 99.18 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.17 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.16 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.16 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.16 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.15 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.15 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.15 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 99.14 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.12 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.1 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.1 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.09 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.09 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.08 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 99.08 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.07 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.07 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.07 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.07 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.05 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.05 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 99.04 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.02 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 99.02 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 99.0 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.0 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 98.97 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 98.96 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 98.96 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 98.96 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 98.96 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 98.96 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 98.95 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 98.94 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 98.93 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 98.93 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 98.93 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 98.92 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 98.91 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 98.9 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 98.9 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 98.89 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 98.88 | |
| 1g3q_A | 237 | MIND ATPase, cell division inhibitor; alpha-beta-a | 98.88 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 98.85 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 98.85 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 98.84 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 98.84 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 98.82 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 98.82 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 98.8 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 98.8 | |
| 1hyq_A | 263 | MIND, cell division inhibitor (MIND-1); MINC, FTSZ | 98.78 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 98.77 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 98.75 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 98.74 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 98.74 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 98.72 | |
| 3ea0_A | 245 | ATPase, para family; alpha-beta-alpha sandwich, st | 98.71 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 98.69 | |
| 2ph1_A | 262 | Nucleotide-binding protein; alpha-beta protein, st | 98.68 | |
| 3q9l_A | 260 | Septum site-determining protein MIND; ATPase, bact | 98.6 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 98.6 | |
| 3la6_A | 286 | Tyrosine-protein kinase WZC; P-loop protein, nucle | 98.58 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 98.57 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 98.55 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 98.54 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 98.52 | |
| 3bfv_A | 271 | CAPA1, CAPB2, membrane protein CAPA1, protein tyro | 98.49 | |
| 3cio_A | 299 | ETK, tyrosine-protein kinase ETK; WZC, escherichia | 98.49 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 98.46 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 98.39 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 98.38 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 98.37 | |
| 1s1m_A | 545 | CTP synthase; CTP synthetase, UTP:ammonia ligase ( | 98.33 | |
| 3k9g_A | 267 | PF-32 protein; ssgcid, SBRI, decode biostructures, | 98.32 | |
| 3ug7_A | 349 | Arsenical pump-driving ATPase; tail-anchored, memb | 98.31 | |
| 3end_A | 307 | Light-independent protochlorophyllide reductase ir | 98.28 | |
| 3zq6_A | 324 | Putative arsenical pump-driving ATPase; tail-ancho | 98.26 | |
| 1vco_A | 550 | CTP synthetase; tetramer, riken structural genomic | 98.23 | |
| 2woo_A | 329 | ATPase GET3; tail-anchored, membrane protein, targ | 98.21 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 98.16 | |
| 1wcv_1 | 257 | SOJ, segregation protein; ATPase, bacterial, chrom | 98.14 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 98.14 | |
| 1ihu_A | 589 | Arsenical pump-driving ATPase; aluminum fluoride, | 98.13 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 98.1 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 98.08 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 98.05 | |
| 1cp2_A | 269 | CP2, nitrogenase iron protein; oxidoreductase; 1.9 | 98.02 | |
| 3kjh_A | 254 | CO dehydrogenase/acetyl-COA synthase complex, acce | 98.0 | |
| 3cwq_A | 209 | Para family chromosome partitioning protein; alpha | 98.0 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 98.0 | |
| 2xj4_A | 286 | MIPZ; replication, cell division, ATPase, WACA; 1. | 97.97 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 97.97 | |
| 1ihu_A | 589 | Arsenical pump-driving ATPase; aluminum fluoride, | 97.97 | |
| 2afh_E | 289 | Nitrogenase iron protein 1; nitrogen fixation, iro | 97.97 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 97.95 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 97.84 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 97.84 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 97.79 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 97.78 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.78 | |
| 2oze_A | 298 | ORF delta'; para, walker type atpases, DNA segrega | 97.74 | |
| 3igf_A | 374 | ALL4481 protein; two-domained protein consisting o | 97.66 | |
| 2woj_A | 354 | ATPase GET3; tail-anchored, membrane protein, targ | 97.6 | |
| 3iqw_A | 334 | Tail-anchored protein targeting factor GET3; ATPas | 97.59 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 97.54 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 97.49 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 97.45 | |
| 3fkq_A | 373 | NTRC-like two-domain protein; RER070207001320, str | 97.44 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 97.36 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.27 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 97.18 | |
| 3io3_A | 348 | DEHA2D07832P; chaperone, membrane traffic, ATPase; | 97.12 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 97.09 | |
| 3fwy_A | 314 | Light-independent protochlorophyllide reductase I | 97.08 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 97.06 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 97.05 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 96.86 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 96.79 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 96.77 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 96.61 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.53 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 96.45 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 96.39 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 96.37 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 96.31 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 96.22 | |
| 3pg5_A | 361 | Uncharacterized protein; structural genomics, PSI- | 95.94 | |
| 3ez9_A | 403 | Para; DNA binding, winged-HTH, partition, biosynth | 95.61 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 94.16 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 93.63 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 92.65 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 92.05 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 91.95 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 91.83 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 91.63 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 90.63 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 89.99 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 88.87 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 88.25 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 88.21 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 87.95 | |
| 3ez2_A | 398 | Plasmid partition protein A; type IA, DNA binding, | 87.51 | |
| 3nva_A | 535 | CTP synthase; rossman fold, nucleotide binding, LI | 87.23 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 86.63 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 86.29 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 85.26 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 85.07 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 84.96 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 84.81 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 84.27 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 84.15 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 83.98 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 83.91 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 83.28 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 83.23 | |
| 1w4r_A | 195 | Thymidine kinase; type II, human, cytosolic, phosp | 83.03 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 82.82 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 82.68 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 82.63 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 82.43 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 82.4 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 82.34 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 81.98 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 81.71 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 81.53 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 80.87 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 80.66 |
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-107 Score=969.60 Aligned_cols=662 Identities=69% Similarity=1.158 Sum_probs=520.8
Q ss_pred HHHHHHHhcccCCCCCCCCCCCCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCC-----CCceeEEcccccCCCCCC
Q 005009 14 RRILLRLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSA-----NKKFVYLKPIQTGYPHDS 88 (719)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~-----g~~v~~~KPi~~g~~~~~ 88 (719)
--++-|-.|+++.-+.|+.+++++++|||+||+||||||+||+|||++|+ ++ |++|+|||||++|+..++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~gt~s~vGKT~vt~gL~r~l~-----~~~~~~~G~~V~~fKPv~~g~~~~~ 85 (831)
T 4a0g_A 11 SGLVPRGSHMKSTSVSPFHLPLNHPTYLIWSANTSLGKTLVSTGIAASFL-----LQQPSSSATKLLYLKPIQTGFPSDS 85 (831)
T ss_dssp ----------------CCEEECSSCEEEEEESSSSSCHHHHHHHHHHHHH-----SCSSCCTTCEEEEEEEEECSTTTCC
T ss_pred cCccccccccCCCCCCCccCccccccEEEEECCCCCCHHHHHHHHHHHHH-----hcccccCCceEEEEcccccCCCcCc
Confidence 34565666666656677788899999999999999999999999999995 77 999999999999988888
Q ss_pred hHHHHHHhcCCCcccc----------CCCccccccchhhhhhHHHhhhhccCCCCCCCCccCCcccccccccccccccCC
Q 005009 89 DSRFLFTKLPSLSLRR----------NFPSSLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGE 158 (719)
Q Consensus 89 d~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (719)
|..++.+.+.++..++ ..+.|...+| ++.++. ..+++ +-+++..+..++
T Consensus 86 ~~~~~~~~~~~~~~~n~da~~~~~~~~~~~~~~~~~-~~l~~~-----------~~~~~------~~~~~~~~~~~~--- 144 (831)
T 4a0g_A 86 DSRFVFSKLDSLSLRRQIPISISNSVLHSSLPAAKS-LGLNVE-----------VSESG------MCSLNFRDEKTV--- 144 (831)
T ss_dssp HHHHHHHHHHHHHHHHTCCCEEEEEEEEEEHHHHHH-HTCCCC-----------BCTTS------EEEEEEEEEECC---
T ss_pred chHHHHHhhccccccchhHHHHHHHHcCCChhhHhh-cccCCc-----------ccCCc------eEeecccccccc---
Confidence 8877776542210000 0112223333 222221 11112 112222222221
Q ss_pred CCCccccccccceeecccCcChHHHHhHhcCCCCCHHHHHHHHHHHHhccccccccc--cccCcCcEEEEeCCCCCCCCC
Q 005009 159 EDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSKVIETLGKCLRDGLESESES--ERGKMEILCIVETAGGVASPG 236 (719)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~d~vivEGagG~~~p~ 236 (719)
.....+.+.++|.|++|++||++++++ +..++.+.|.+.|.+..+.. ++. .....+|++|||||||+++|+
T Consensus 145 --~~~~~~~~~~~~~~~~p~sp~~aa~~~-~~~~~~~~i~~~~~~~l~~~----a~~~~~~~~~~D~vvVEGaGGl~~p~ 217 (831)
T 4a0g_A 145 --TGAPELLCKTLYAWEAAISPHLAAERE-NATVEDSVVLQMIEKCLKEE----MECGVKSEKSDLLCLVETAGGVASPG 217 (831)
T ss_dssp --TTSCEEEEEEEEECSSSSCHHHHHHHT-TCCCCHHHHHHHHHHHHHHH----C---------CEEEEEECCSSTTCBC
T ss_pred --cccccccccceeeecCCcCHHHHHHHc-CCCCCHHHHHHHHHHHHHhh----hhccccccccCCEEEEECCCCccCCC
Confidence 123456789999999999999999999 88899999999999844310 000 000138999999999999999
Q ss_pred CCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCCCHHHHHHhhcCCCcEEecCCCCCC
Q 005009 237 PSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQD 316 (719)
Q Consensus 237 ~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~~~~~~l~~~~~~~~pvlglP~~~~~ 316 (719)
+.+.+++|||+.|++|||||+++++|++|++++++++++.+|++|.|||+|+....+.+.+.+++++++||..||..|.+
T Consensus 218 ~~~~~~adla~~l~~PVILV~d~~lG~i~~~~lt~~~l~~~g~~v~GvI~N~~~~~~~~~l~~~l~~~~~v~vLg~lP~~ 297 (831)
T 4a0g_A 218 PSGTLQCDLYRPFRLPGILVGDGRLGGISGTIAAYESLKLRGYDIAAVVFEDHGLVNEVPLTSYLRNKVPVLVLPPVPKD 297 (831)
T ss_dssp TTSCBHHHHTGGGCCCEEEECCCSTTHHHHHHHHHHHHHTTTCCEEEEEEECCSSCTHHHHHHHTTTSSCEEEECCCCCC
T ss_pred CCCccHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHHCCCcEEEEEEeCCchhHHHHHHHHHHhCCCceeeCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999889999999998765555444444545
Q ss_pred CcchhhhhhhhchhhhhhHHHHHHHHHHHHHHhhcccchhhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCc
Q 005009 317 SSNDLMEWFDESHNVFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNK 396 (719)
Q Consensus 317 ~~~~~~~~l~~~~~~v~~Ll~~l~~~~~~r~~rl~~L~e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~ 396 (719)
.+.+|.+|++.....+.++++.|..++.+|+.+++.+.+++.+++||||++++.+....|++|++++|.|+|+||.|||.
T Consensus 298 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~r~~~l~~~~~~~~~~~whp~t~~~~~~~~~p~~i~~a~G~g~~l~D~dG~~ 377 (831)
T 4a0g_A 298 PSDDLIEWFVESDGVFKALKETMVLANLERLERLNGMAKLAGEVFWWPFTQHKLVHQETVTVIDSRCGENFSIYKASDNS 377 (831)
T ss_dssp TTCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCCTTCCGGGCCGGGCEEEEEEETTEEEEEEHHHHS
T ss_pred CHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccCcccccCCCCeEEEEeeccceEEEECCCCc
Confidence 56789999999878899999999999999999999999999999999999998766667999999999999999999975
Q ss_pred ccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHH
Q 005009 397 FIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEI 476 (719)
Q Consensus 397 ~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~ 476 (719)
++++|||++||||++++||++||+|++|+++|++++.|+++.+++++++.+|||+|++++|.+.+++|||+||||||||+
T Consensus 378 ~~~~ylD~~sg~~~~~lGh~~~p~i~~Ai~~Q~~~l~h~~~~~~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~ 457 (831)
T 4a0g_A 378 SLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEI 457 (831)
T ss_dssp EEEEEEETTHHHHTCCCCHHHHHHHHHHHHHHHHHHSSCCCTTEECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHH
T ss_pred cchheeeecccHhhcCCCCCCCHHHHHHHHHHHhhcccccccccCCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHH
Confidence 55589999999999999998899999999999999999877678899999999999999986657899999999999999
Q ss_pred HHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCccccc
Q 005009 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (719)
Q Consensus 477 AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (719)
|||+|+|+|++++|.. +++..+.++|.+||+++++|||+|++++++|+...|+..++.+|+.++++++++|...+.
T Consensus 458 AlK~A~r~~~~~~g~~----~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 533 (831)
T 4a0g_A 458 ALKMAFRKFCVDHNFC----EATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLS 533 (831)
T ss_dssp HHHHHHHHHHHTTTC-------------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEE
T ss_pred HHHHHHHHHHhhcCCC----ccccccccCccEEEEecCCcccCceeeeeccCccccccccccccccCCccccCCcccccc
Confidence 9999977787766530 000001136899999999999999999999998777764345777777788888876666
Q ss_pred CcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccc
Q 005009 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (719)
Q Consensus 557 ~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~ 636 (719)
+++++++.|+.|+... ..+.+|++.++.|...++.+.+...|.+.|++.|++.....+++++||||+|||+||+||++
T Consensus 534 ~~~~~~~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~ 611 (831)
T 4a0g_A 534 NGSWNISLPESFSEIA--PEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMH 611 (831)
T ss_dssp TTEEEEECCTTSCCCC--SSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEECCSEETTTTSE
T ss_pred CCceEecCCccccccc--cccccccchhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCc
Confidence 7888999998876421 11234666544454334445667788889998887421113468999999999669999999
Q ss_pred cCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhcCC
Q 005009 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD 714 (719)
Q Consensus 637 ~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~~ 714 (719)
++|++||++|+++|++||++||+|||||||||||++|+++++|++|||+|+||+|||||+|+|++++++++++.|..+
T Consensus 612 ~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDiitlsK~L~gG~~Plgav~~~~~i~~~~~~~ 689 (831)
T 4a0g_A 612 MVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGD 689 (831)
T ss_dssp EECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSSCCSEEEECGGGGTTSSCCEEEEECHHHHHTTCSS
T ss_pred cCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCCCCcEEEEecccccCccCcEEEEECHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999764
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-66 Score=582.47 Aligned_cols=304 Identities=19% Similarity=0.233 Sum_probs=262.1
Q ss_pred hcccchhhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhh
Q 005009 350 LCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTA 429 (719)
Q Consensus 350 l~~L~e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~ 429 (719)
.+.+.+++..++||||++++.+.+..|+||++++|. ||||.||| +|||+++|+|++++||+ ||+|++|+++|+
T Consensus 24 ~~~~~~~~~~~~~h~~t~~~~~~~~~P~vi~rg~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~q~ 96 (473)
T 4e3q_A 24 PQSWEARAETYSLYGFTDMPSLHQRGTVVVTHGEGP--YIVDVNGR----RYLDANSGLWNMVAGFD-HKGLIDAAKAQY 96 (473)
T ss_dssp CCSHHHHHHHHBCCSSCCHHHHHHHCCEEEEEEETT--EEEETTCC----EEEETTTTTTTCTTCSC-CHHHHHHHHHHH
T ss_pred cccHHHHHhhhcCCCCCChhhhccCCCEEEEeeecC--EEEeCCCC----EEEEcccCHHHhhccCC-CHHHHHHHHHHH
Confidence 345777888899999999887766789999998886 79999999 99999999999999999 999999999999
Q ss_pred hhccccc-CCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceE
Q 005009 430 ARFGHVM-FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELK 508 (719)
Q Consensus 430 ~~~~~~~-~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~k 508 (719)
+++.+.. +....+++..+|||+|++.+|.+ +++|+|+||||||||+|||+| |+|+.++|. ++|.+
T Consensus 97 ~~l~~~~~~~~~~~~~~~~lAe~L~~~~p~~-~~~v~f~~sGsEA~e~AiKlA-r~~~~~~g~------------~~r~~ 162 (473)
T 4e3q_A 97 ERFPGYHAFFGRMSDQTVMLSEKLVEVSPFD-SGRVFYTNSGSEANDTMVKML-WFLHAAEGK------------PQKRK 162 (473)
T ss_dssp HHCCCCCCCTTEEEHHHHHHHHHHHHHSSCS-SCEEEEESSHHHHHHHHHHHH-HHHHHHTTC------------TTCCE
T ss_pred HhcccccccccccCHHHHHHHHHHHhhCCCC-ccEEEEeCchHHHHHHHHHHH-HHHHHhcCC------------CCcce
Confidence 9987653 33456899999999999999865 789999999999999999999 788777765 78899
Q ss_pred EEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhh
Q 005009 509 VLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFY 588 (719)
Q Consensus 509 II~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~ 588 (719)
||+|+++|||+|.+++++|+.. ++.. +.+|. ++..+++.|++|+.. +.
T Consensus 163 ii~~~~~yHG~t~~a~s~tg~~-~~~~------------~~~~~----~~~~~~~~p~~~~~~----------~~----- 210 (473)
T 4e3q_A 163 ILTRWNAYHGVTAVSASMTGKP-YNSV------------FGLPL----PGFVHLTCPHYWRYG----------EE----- 210 (473)
T ss_dssp EEEETTCCCCSSHHHHHHSCCG-GGGG------------GTCSC----TTEEEECCCCHHHHS----------CT-----
T ss_pred EEEeeceECCCccccccccccc-cccc------------cCCCC----CcccccCCCcccccc----------cc-----
Confidence 9999999999999999999854 2221 12222 356788888887642 11
Q ss_pred cccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccc
Q 005009 589 EERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR 668 (719)
Q Consensus 589 ~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGR 668 (719)
....+.+...+.+.+++.+.+ .++++|||||+||| ||+||+++||++||++||++|++||+|||+|||||||||
T Consensus 211 -~~~~~~~~~~~~~~l~~~i~~----~~~~~iAavi~EPi-qg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGR 284 (473)
T 4e3q_A 211 -GETEEQFVARLARELEETIQR----EGADTIAGFFAEPV-MGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGR 284 (473)
T ss_dssp -TCCHHHHHHHHHHHHHHHHHH----HCGGGEEEEEECSS-BSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSST
T ss_pred -cchhhHHHHHHHHHHHHHHHh----hCCCceEEEEeCCc-cCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCc
Confidence 112345566667788888875 56789999999998 999999999999999999999999999999999999999
Q ss_pred cCccccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhc
Q 005009 669 LGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 669 tG~~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
||+||+++++||+|||+|+||+|||||+|+||+++++++++.|.
T Consensus 285 tG~~fa~e~~gv~PDi~t~~K~l~gG~~Pl~av~~~~~i~~~~~ 328 (473)
T 4e3q_A 285 TGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLE 328 (473)
T ss_dssp TSSSCHHHHTTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHH
T ss_pred ccchhHHHhcCCCCChHHhcccccCCCCCcccccccHHHHHHhc
Confidence 99999999999999999999999999999999999999999875
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-60 Score=528.79 Aligned_cols=272 Identities=24% Similarity=0.280 Sum_probs=227.2
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|+++++++|. ||||.||| +||||++|+|++++||| ||+|++|+++|++++.|..+....++...+|+|+|++
T Consensus 46 ~P~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~ 118 (456)
T 4atq_A 46 VPVYVEDADGG--IIRDVDGN----SFIDLGSGIAVTSVGAS-DPAVVAAVQEAAAHFTHTCFMVTPYEGYVAVTEQLNR 118 (456)
T ss_dssp CSSCEEEEETT--EEEETTSC----EEEESSHHHHTCTTCTT-CHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHH
T ss_pred CCCeEEeeecC--EEEeCCCC----EEEEccccHHHHhcCCC-CHHHHHHHHHHHhhccCcccCccCcHHHHHHHHHHHH
Confidence 47788998886 89999999 99999999999999999 9999999999999998877666678999999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCC-CC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP-YT 533 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~-~~ 533 (719)
++|.+.+++|+|+||||||||+|||+| |.+++| .+||+|+++|||+|.+++++++... ++
T Consensus 119 ~~p~~~~~~v~f~~sGsEA~e~AlklA-r~~t~r------------------~~ii~~~~~yHG~t~~als~t~~~~~~~ 179 (456)
T 4atq_A 119 LTPGDHAKRTVLFNSGAEAVENAVKVA-RLATGR------------------DAVVAFDHAYHGRTNLTMALTAKAMPYK 179 (456)
T ss_dssp HSSCSSCEEEEEESSHHHHHHHHHHHH-HHHHCC------------------CEEEEETTCCCCSSHHHHHHCCCCTTTT
T ss_pred hCCCCCCcEEEEeCChHHHHHHHHHHH-hhhhcC------------------CeEEEEecccCCccccccccccCccccc
Confidence 998655789999999999999999999 788765 5999999999999999999997643 22
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
. .++++ .++..++|+|++++... .+ ....+....+.+.+++.
T Consensus 180 ~--------~~~p~--------~~~~~~~p~~~~~~~~~--------~~--------~~~~~~~~~~~~~~e~~------ 221 (456)
T 4atq_A 180 T--------NFGPF--------APEVYRMPMSYPFREEN--------PE--------ITGAEAAKRAITMIEKQ------ 221 (456)
T ss_dssp T--------TSCSC--------CSSEEEECCCCGGGCSS--------TT--------CCHHHHHHHHHHHHHHH------
T ss_pred c--------CCCCc--------cccceecccccccccCC--------Cc--------ccHHHHHHHHHHHHHHh------
Confidence 2 11111 13456777776664310 10 01112222233333332
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCC
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lgg 693 (719)
.++++|||||+||| ||+||+++||++||++||++|++||++||+|||||||||||+||+++++||+|||+|+||+|||
T Consensus 222 -~~~~~iAAvivEPi-qg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv~PDivt~gK~lgg 299 (456)
T 4atq_A 222 -IGGDQVAAIIIEPI-QGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGVVPDIITMAKGIAG 299 (456)
T ss_dssp -TCGGGEEEEEECSS-BTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEECGGGGT
T ss_pred -hcCCceEEEEeccc-cCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccccccccccCCCCchhhhhhcccC
Confidence 24679999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchheeEeCHHHHhhhcC
Q 005009 694 GVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~~ 713 (719)
| +|+|++++++++++.+..
T Consensus 300 g-~P~~av~~~~~i~~~~~~ 318 (456)
T 4atq_A 300 G-LPLSAITGRADLLDAVHP 318 (456)
T ss_dssp T-SSCEEEEEEHHHHTTSCT
T ss_pred c-CCceeeEecHHHHhcccc
Confidence 9 699999999999998854
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-55 Score=489.99 Aligned_cols=287 Identities=18% Similarity=0.182 Sum_probs=239.9
Q ss_pred hhhhHHHHHHHHHHHHHHhhcccchhhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccc
Q 005009 331 VFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWT 410 (719)
Q Consensus 331 ~v~~Ll~~l~~~~~~r~~rl~~L~e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~ 410 (719)
.+++.+.....+|.++.++++.+.+++.+.+..-.+.....-...|+++++++|. ||||.||| +|||+++|||+
T Consensus 25 ~~~~~~~~~~~~~~~~~p~s~~~~~~a~~~~pgg~~~~~~~~~~~P~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~ 98 (454)
T 4ao9_A 25 AIDQALADAYRRFTDANPASQRQFEAQARYMPGANSRSVLFYAPFPLTIARGEGA--ALWDADGH----RYADFIAEYTA 98 (454)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHTTTSGGGCSSGGGCCSSCCCEEEEEETT--EEEETTCC----EEEESSGGGGT
T ss_pred hhhhhHHHHHHHHhhcCcHhHHHHHHHhhhCCCCCCCCccccCCCCccEEEeecC--EEEECCCC----EEEEccccHHh
Confidence 3455666678899999999999999999987543222111112358899998886 79999999 99999999999
Q ss_pred cCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhcccc
Q 005009 411 QGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHE 490 (719)
Q Consensus 411 ~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G 490 (719)
+++||+ ||+|++|+++|+++..+.. ..++...+|+++|++.+|. +++|+|+||||||||+|||+| |.|++|
T Consensus 99 ~~lGH~-hp~v~~Av~~q~~~~~~~~---~~~~~~~~lae~l~~~~p~--~~~v~f~~SGsEA~e~AiklA-r~~tgr-- 169 (454)
T 4ao9_A 99 GVYGHS-APEIRDAVIEAMQGGINLT---GHNLLEGRLARLICERFPQ--IEQLRFTNSGTEANLMALTAA-LHFTGR-- 169 (454)
T ss_dssp TTTCSC-CHHHHHHHHHHHHTCSCCC---SEESSHHHHHHHHHHHSTT--CSEEEEESSHHHHHHHHHHHH-HHHHTC--
T ss_pred hcccCC-CHHHHHHHHHHHhcCCCcc---CCcHHHHHHHHHHHHhCCC--CCEEEEeCchHHHHHHHHHHH-HhcccC--
Confidence 999999 9999999999999876543 3467788999999999874 799999999999999999999 888765
Q ss_pred ccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhh
Q 005009 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYS 570 (719)
Q Consensus 491 ~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~ 570 (719)
.+||+|+++|||+|.++++.++...+.. ....
T Consensus 170 ----------------~~ii~~~~~yHG~t~~~~~~~~~~~~~~-------------------------~~~~------- 201 (454)
T 4ao9_A 170 ----------------RKIVVFSGGYHGGVLGFGARPSPTTVPF-------------------------DFLV------- 201 (454)
T ss_dssp ----------------CEEEEETTCBCSTTCBBSSSBCTTSCCS-------------------------EEEE-------
T ss_pred ----------------CeEEEEeCCcCCccccccccccCccCCC-------------------------Cccc-------
Confidence 4899999999999998877664321110 0011
Q ss_pred cccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHH
Q 005009 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650 (719)
Q Consensus 571 ~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc 650 (719)
++|||. +.+++.|++ .+++|||||+||| ||++|+++|+++||++||++|
T Consensus 202 -------~p~nd~------------------~~l~~~l~~-----~~~~iAavIvEPv-~g~~G~~~p~~~fL~~lr~lc 250 (454)
T 4ao9_A 202 -------LPYNDA------------------QTARAQIER-----HGPEIAVVLVEPM-QGASGCIPGQPDFLQALRESA 250 (454)
T ss_dssp -------ECTTCH------------------HHHHHHHHH-----TGGGEEEEEECSE-ESTTTCEECCHHHHHHHHHHH
T ss_pred -------CCCchH------------------HHHHHHHhh-----cCCceEEEEeccc-cCCCCccCCchhhHHHHHHHH
Confidence 225652 566777774 4678999999998 999999999999999999999
Q ss_pred HhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhcCC
Q 005009 651 QNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD 714 (719)
Q Consensus 651 ~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~~ 714 (719)
++||++||+||||| ||||++|+++++||+|||+|+||+|||| +|+||+++++++++.|...
T Consensus 251 ~~~g~lLI~DEV~t--GR~G~~~a~e~~gv~PDi~t~gK~lggG-~Piga~~~~~ei~~~~~~~ 311 (454)
T 4ao9_A 251 TQVGALLVFDEVMT--SRLAPHGLANKLGIRSDLTTLGKYIGGG-MSFGAFGGRADVMALFDPR 311 (454)
T ss_dssp HHHTCEEEEECTTG--GGGSTTCHHHHHTCCCSEEEEEGGGGTT-SSCEEEEECHHHHGGGCTT
T ss_pred hhcCCEEEEECCCc--CCCccccchhccCCCCcEEEeccccCCC-CcceeeeeHHHHHHHHhhc
Confidence 99999999999999 5999999999999999999999999999 6999999999999998653
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-51 Score=463.50 Aligned_cols=304 Identities=21% Similarity=0.233 Sum_probs=256.4
Q ss_pred hcccchhhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhh
Q 005009 350 LCDMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTA 429 (719)
Q Consensus 350 l~~L~e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~ 429 (719)
+.++.+++.+++||||++++.+....|.++++++|. |+||.||+ +||||++++|++++||+ ||+|++|+++|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~--~~~d~~G~----~ylD~~s~~~~~~lGh~-~p~v~~A~~~~l 83 (476)
T 3i5t_A 11 AGAVGAAMRDHILLPAQEMAKLGKSAQPVLTHAEGI--YVHTEDGR----RLIDGPAGMWCAQVGYG-RREIVDAMAHQA 83 (476)
T ss_dssp --CHHHHHHHHBCCTTEEGGGTTTCCCCBEEEEEBT--EEEETTCC----EEEETTHHHHTCTTCBC-CHHHHHHHHHHH
T ss_pred chHHHhhcccccccCcccccccccCCCeeEEEeecC--EEEECCCC----EEEECCCchhhccCCCC-CHHHHHHHHHHH
Confidence 346777788889999999887766689999998886 79999999 99999999999999999 999999999999
Q ss_pred hhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEE
Q 005009 430 ARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKV 509 (719)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kI 509 (719)
+++.+.....+.++...+|+++|++..|.+ .++|+|+|||+|||+.|||++ +.+...+|. ++|.+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~sGseA~~~Aik~a-~~~~~~~g~------------~~~~~v 149 (476)
T 3i5t_A 84 MVLPYASPWYMATSPAARLAEKIATLTPGD-LNRIFFTTGGSTAVDSALRFS-EFYNNVLGR------------PQKKRI 149 (476)
T ss_dssp HHCCCCCTTTCBCHHHHHHHHHHHTTSSTT-CCEEEEESSHHHHHHHHHHHH-HHHHHHTTC------------TTCCEE
T ss_pred HhccCcccCccCCHHHHHHHHHHHhcCCCC-cCEEEEeCchHHHHHHHHHHH-HHHHHhcCC------------CCCCEE
Confidence 998765433567899999999999998744 689999999999999999999 666555443 567899
Q ss_pred EEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhc
Q 005009 510 LALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYE 589 (719)
Q Consensus 510 I~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~ 589 (719)
|+++++|||.|.+++++++...|+.. +.++ .++..+++.|..|++ ++
T Consensus 150 i~~~~~yHg~~~~~~~~~~~~~~~~~------------~~~~----~~~~~~~~~p~~~~~---------~~-------- 196 (476)
T 3i5t_A 150 IVRYDGYHGSTALTAACTGRTGNWPN------------FDIA----QDRISFLSSPNPRHA---------GN-------- 196 (476)
T ss_dssp EEETTCCCCSSHHHHHTCCCGGGCTT------------SCCC----CTTEEEECCCCGGGC---------TT--------
T ss_pred EEEcCCcCcCChhhccccCChhhccc------------cCCC----CCCcEEeCCCccccc---------CC--------
Confidence 99999999999999999987655542 1111 134567777766542 11
Q ss_pred ccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCcccc
Q 005009 590 ERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRL 669 (719)
Q Consensus 590 ~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRt 669 (719)
.+.+.+...+.+.|++.+.+ .+++++++||+||+ |+++|++++|++||++|+++|++||++||+|||||||||+
T Consensus 197 -~~~~~~~~~~~~~le~~i~~----~~~~~~aavi~ep~-~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~ 270 (476)
T 3i5t_A 197 -RSQEAFLDDLVQEFEDRIES----LGPDTIAAFLAEPI-LASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRC 270 (476)
T ss_dssp -SCHHHHHHHHHHHHHHHHHH----HCGGGEEEEEECSS-BTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT
T ss_pred -CchHHHHHHHHHHHHHHHHh----cCCCCEEEEEECCc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccc
Confidence 12345556667889988874 23468999999998 9999999999999999999999999999999999999999
Q ss_pred Ccccccc-ccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 670 GVETTAD-LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 670 G~~~a~e-~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
|++|+++ ++|+.|||+|+||+|||||+|+|++++++++++.|..
T Consensus 271 G~~~~~~~~~~v~pdi~t~sK~l~~G~~plg~v~~~~~i~~~~~~ 315 (476)
T 3i5t_A 271 GEWFASEKVFGVVPDIITFAKGVTSGYVPLGGLAISEAVLARISG 315 (476)
T ss_dssp SSSCHHHHTTCCCCSEEEECGGGGTTSSCCEEEEECHHHHHTTSG
T ss_pred cCceeeecccCCCcchhhhhhhhcCCCcCeEEEEECHHHHHHHhc
Confidence 9999999 9999999999999999998899999999999998864
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-51 Score=463.97 Aligned_cols=298 Identities=20% Similarity=0.288 Sum_probs=249.7
Q ss_pred chhhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcc
Q 005009 354 PKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG 433 (719)
Q Consensus 354 ~e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~ 433 (719)
.+++.+++||||++++.+....|+++++++|. |+||.||+ +||||++|+|+++|||+ ||+|++|+++|++++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~--~l~d~~G~----~ylD~~s~~~~~~lGh~-~p~v~~A~~~~~~~~~ 88 (472)
T 3hmu_A 16 QALDAAHHLHPFSANNALGEEGTRVITRARGV--WLNDSEGE----EILDAMAGLWCVNIGYG-RDELAEVAARQMRELP 88 (472)
T ss_dssp HHHHHHHEECTTEEHHHHHHHCCEEEEEEEBT--EEEETTCC----EEECTTHHHHTCTTCBC-CHHHHHHHHHHHHHCS
T ss_pred HHHHHhhccCCcccccccccCCCeeEEEeecC--EEEECCCC----EEEECCCchhhccCCCC-CHHHHHHHHHHHHhcc
Confidence 34556679999998654433468999998886 79999999 99999999999999999 9999999999999977
Q ss_pred c-ccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEE
Q 005009 434 H-VMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (719)
Q Consensus 434 ~-~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~ 512 (719)
+ .+...+.++...+|+++|++..|.+ .++|+|+|||+||||+|+|++ |.|++.+|. ++|.+||++
T Consensus 89 ~~~~~~~~~~~~~~~lae~l~~~~~~~-~~~v~~~~sGseA~~~aik~a-~~~~~~~g~------------~~~~~ii~~ 154 (472)
T 3hmu_A 89 YYNTFFKTTHVPAIALAQKLAELAPGD-LNHVFFAGGGSEANDTNIRMV-RTYWQNKGQ------------PEKTVIISR 154 (472)
T ss_dssp CCCSSSSEECHHHHHHHHHHHHHSCTT-EEEEEEESSHHHHHHHHHHHH-HHHHHHTTC------------TTCCEEEEE
T ss_pred ccccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCHHHHHHHHHHHH-HHHHHhcCC------------CCCCEEEEE
Confidence 3 3334567899999999999998754 689999999999999999999 777766554 567899999
Q ss_pred eCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccC
Q 005009 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (719)
Q Consensus 513 ~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d 592 (719)
+++|||.|.+++++++...|+.. +. + .++..+++.|++|++ ++. .+
T Consensus 155 ~~~yHg~t~~~~~~~~~~~~~~~------------~~-~----~~~~~~v~~p~~~~~----------~~~-------~~ 200 (472)
T 3hmu_A 155 KNAYHGSTVASSALGGMAGMHAQ------------SG-L----IPDVHHINQPNWWAE----------GGD-------MD 200 (472)
T ss_dssp TTCCCCSSHHHHHHSCCHHHHHT------------TC-C----CSSEEEECCCCHHHH----------CTT-------CC
T ss_pred cCcCCCccHHhhhccCChhhccc------------cC-C----CCCcEEeCCCccccC----------Ccc-------cC
Confidence 99999999999999986554432 11 1 134567777776642 110 12
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc
Q 005009 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (719)
Q Consensus 593 ~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~ 672 (719)
.+.+...+.+.|++.+.+ .+++++++||+||+ |++||++++|++||++|+++|++||++||+|||||||||+|++
T Consensus 201 ~~~~~~~~~~~le~~i~~----~~~~~~aavi~epv-~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~ 275 (472)
T 3hmu_A 201 PEEFGLARARELEEAILE----LGENRVAAFIAEPV-QGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNW 275 (472)
T ss_dssp HHHHHHHHHHHHHHHHHH----HCGGGEEEEEECSS-BSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS
T ss_pred HHHHHHHHHHHHHHHHHh----cCCCCEEEEEEcCc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCcc
Confidence 234555667888888874 23468999999998 9999999999999999999999999999999999999999999
Q ss_pred ccccccCCCcceeeehhccCCCccchheeEeCHHHHhhh
Q 005009 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 673 ~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~ 711 (719)
|+++++|+.|||+||||+||||++|+|++++++++++.+
T Consensus 276 ~a~~~~~v~pdi~t~sK~l~gg~~plG~v~~~~~i~~~~ 314 (472)
T 3hmu_A 276 FGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVI 314 (472)
T ss_dssp CHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHH
T ss_pred chhHHhCCCCceeeechhhhcCCcceEEEEECHHHHHhc
Confidence 999999999999999999999989999999999999988
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-48 Score=432.80 Aligned_cols=302 Identities=18% Similarity=0.303 Sum_probs=232.9
Q ss_pred ccchhhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhh
Q 005009 352 DMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAAR 431 (719)
Q Consensus 352 ~L~e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~ 431 (719)
.+.+++.+++||||+++..+....|.++++++|. |+||.||+ +||||++++|+++|||+ ||+|++|+++|+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~--~~~d~~g~----~ylD~~~~~~~~~lG~~-~p~v~~A~~~~~~~ 81 (459)
T 4a6r_A 9 QWRELDAAHHLHPFTDTASLNQAGARVMTRGEGV--YLWDSEGN----KIIDGMAGLWCVNVGYG-RKDFAEAARRQMEE 81 (459)
T ss_dssp -------------------------CCEEEEEBT--EEEETTCC----EEEETTHHHHTCTTCBC-CHHHHHHHHHHHHH
T ss_pred HHHHHhhhhccCCccccccccccCCeeEEEeecC--EEEECCCC----EEEECCCchhcccCCCC-CHHHHHHHHHHHHh
Confidence 4667788899999999877665678899998886 79999999 99999999999999999 99999999999998
Q ss_pred ccc-ccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEE
Q 005009 432 FGH-VMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVL 510 (719)
Q Consensus 432 ~~~-~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII 510 (719)
+.+ .....+.++...+|+++|++..|.+ .++|+|+|||+|||+.|+|++ +.+++.+|. +++.+||
T Consensus 82 ~~~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~ggseA~~~al~~~-~~~~~~~g~------------~~~~~vi 147 (459)
T 4a6r_A 82 LPFYNTFFKTTHPAVVELSSLLAEVTPAG-FDRVFYTNSGSESVDTMIRMV-RRYWDVQGK------------PEKKTLI 147 (459)
T ss_dssp CSCCCTTSSSCCHHHHHHHHHHHHHSCTT-CCEEEEESSHHHHHHHHHHHH-HHHHHHTTC------------TTCCEEE
T ss_pred ccccccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCchHHHHHHHHHHH-HHHHHhcCC------------CCCCEEE
Confidence 763 3333567899999999999988754 689999999999999999999 677665553 5678999
Q ss_pred EEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcc
Q 005009 511 ALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEE 590 (719)
Q Consensus 511 ~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~ 590 (719)
+++++|||.+.+++++++...|+.. +.+. ..+..+++.|.+|++ ++.
T Consensus 148 ~~~~~yhg~~~~~~~~~~~~~~~~~------------~~~~----~~~~~~~~~p~~~~~----------~~~------- 194 (459)
T 4a6r_A 148 GRWNGYHGSTIGGASLGGMKYMHEQ------------GDLP----IPGMAHIEQPWWYKH----------GKD------- 194 (459)
T ss_dssp EETTCCCCSSHHHHHHSCCTTTC---------------CCS----CSSEEEECCCCHHHH----------CTT-------
T ss_pred EECCCcCCccHHHHhhcCChhhccc------------cCCC----CCCCEEeCCCccccC----------Ccc-------
Confidence 9999999999999999987655542 1111 124567777876643 110
Q ss_pred cCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccC
Q 005009 591 RDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG 670 (719)
Q Consensus 591 ~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG 670 (719)
.|.+.+...+.+.|++.+.+ .+++++++||+||+ ++++|++++|++|+++|+++|++||++||+|||||||||+|
T Consensus 195 ~d~~~~~~~~~~~le~~i~~----~~~~~~~~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G 269 (459)
T 4a6r_A 195 MTPDEFGVVAARWLEEKILE----IGADKVAAFVGEPI-QGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTG 269 (459)
T ss_dssp CCHHHHHHHHHHHHHHHHHH----HCGGGEEEEEECSS-BTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTS
T ss_pred cCHHHHHHHHHHHHHHHHHH----cCCCCEEEEEECCc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc
Confidence 12234455567888888874 23468999999997 99999999999999999999999999999999999999999
Q ss_pred ccccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhc
Q 005009 671 VETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 671 ~~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
++|+++++++.||++||||+||||++|+|++++++++++.+.
T Consensus 270 ~~~~~~~~~~~pdi~t~sK~l~gg~~~lg~v~~~~~i~~~~~ 311 (459)
T 4a6r_A 270 EWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLI 311 (459)
T ss_dssp SSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHH
T ss_pred ccchHhhcCCCCCeeehhhhhcCCCCCccceeeCHHHHHHhh
Confidence 999999999999999999999999889999999999999875
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-48 Score=433.95 Aligned_cols=303 Identities=19% Similarity=0.284 Sum_probs=249.5
Q ss_pred ccchhhCCCccccCCCCCCCCCC--CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhh
Q 005009 352 DMPKRAGELFWWPFTQHKLVPEE--AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTA 429 (719)
Q Consensus 352 ~L~e~~~~~~~~p~~~~~~~~~~--~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~ 429 (719)
.+.+++.+++||||++++.+... .|.++++++|. |+||.||+ +||||++++|++++||+ ||+|++|+++|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~--~~~d~~G~----~~lD~~~~~~~~~lG~~-~p~v~~A~~~~~ 80 (460)
T 3gju_A 8 ELNAWDRDHFFHPSTHMGTHARGESPTRIMAGGEGV--TVWDNNGR----KSIDAFAGLYCVNVGYG-RQKIADAIATQA 80 (460)
T ss_dssp CHHHHHHHHCCCTTSCHHHHHHTCSCCCCEEEEEBT--EEEETTCC----EEEETTHHHHTCTTCBC-CHHHHHHHHHHH
T ss_pred HHHHhhhcccccCccccccccccCCCceEEEEeecc--EEEECCCC----EEEECCcchhhccCCCC-CHHHHHHHHHHH
Confidence 34556677899999986543222 34889988776 79999999 99999999999999999 999999999999
Q ss_pred hhcccc-cCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceE
Q 005009 430 ARFGHV-MFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELK 508 (719)
Q Consensus 430 ~~~~~~-~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~k 508 (719)
+++.+. ....+.++...+|+++|++..+.+ .++|+|+|||+|||+.|+|++ +.+++.+|. ++|.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~gGseA~~~al~~~-~~~~~~~g~------------~~~~~ 146 (460)
T 3gju_A 81 KNLAYYHAYVGHGTEASITLAKMIIDRAPKG-MSRVYFGLSGSDANETNIKLI-WYYNNVLGR------------PEKKK 146 (460)
T ss_dssp HHHSCCCCCTTCCCHHHHHHHHHHHHHSCTT-EEEEEEESSHHHHHHHHHHHH-HHHHHHTTC------------TTCCE
T ss_pred HhccccccccccCCHHHHHHHHHHHhhCCCC-cCEEEEeCchHHHHHHHHHHH-HHHHHhcCC------------CCCCE
Confidence 987642 333567888999999999987644 689999999999999999999 677665554 56789
Q ss_pred EEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhh
Q 005009 509 VLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFY 588 (719)
Q Consensus 509 II~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~ 588 (719)
||+++++|||.+.+++++++...++.. +.+. ..+..+++.|..|++ ++.
T Consensus 147 vi~~~~~yhg~~~~~~~~~~~~~~~~~------------~~~~----~~~~~~~~~p~~~~~----------~~~----- 195 (460)
T 3gju_A 147 IISRWRGYHGSGVMTGSLTGLDLFHNA------------FDLP----RAPVLHTEAPYYFRR----------TDR----- 195 (460)
T ss_dssp EEEETTCCCCSSHHHHHHCCCGGGTTT------------TTCS----CTTEEEECCCCGGGC----------SCT-----
T ss_pred EEEECCCcCCCCHHHhhccCCcccccc------------cCCC----CCCCEEeCCCccccC----------Ccc-----
Confidence 999999999999999999986655432 1111 134567777776653 220
Q ss_pred cccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccc
Q 005009 589 EERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR 668 (719)
Q Consensus 589 ~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGR 668 (719)
+.+.+++...+.+.|++.+.+ .+++++++||+||+ ++++|+++++++|+++|+++|++||++||+|||||||||
T Consensus 196 -g~~~~~~~~~~~~~le~~i~~----~~~~~~aaii~ep~-~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr 269 (460)
T 3gju_A 196 -SMSEEQFSQHCADKLEEMILA----EGPETIAAFIGEPI-LGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGR 269 (460)
T ss_dssp -TCCHHHHHHHHHHHHHHHHHH----HCGGGEEEEEECSS-BSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTT
T ss_pred -ccChhHHHHHHHHHHHHHHHh----cCCCCEEEEEECCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCc
Confidence 112234555667888888874 23468999999997 999999999999999999999999999999999999999
Q ss_pred cCccccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhc
Q 005009 669 LGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 669 tG~~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
+|++|+++++|+.||++||||+|||||+|+|++++++++++.+.
T Consensus 270 ~g~~~~~~~~~~~pdi~t~sK~l~gG~~~lg~v~~~~~i~~~~~ 313 (460)
T 3gju_A 270 LGTMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVADRVWQVLV 313 (460)
T ss_dssp TSSSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHH
T ss_pred ccccchHhhcCCCCCeeeeehhhcCCCCCeEEEEECHHHHHHHh
Confidence 99999999999999999999999999889999999999999884
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-46 Score=419.31 Aligned_cols=299 Identities=27% Similarity=0.386 Sum_probs=226.2
Q ss_pred cchhhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhc
Q 005009 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (719)
Q Consensus 353 L~e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~ 432 (719)
+.+++.+++||||++++.+ ...|+++++++|. |+||.||+ +|||+++++|++++||+ ||+|++|+++|++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~-~~~p~~~~~g~G~--~v~d~~g~----~ylD~~~~~~~~~lG~~-~p~v~~A~~~~~~~~ 76 (448)
T 3dod_A 5 LIEKSKKHLWLPFTQMKDY-DENPLIIESGTGI--KVKDINGK----EYYDGFSSVWLNVHGHR-KKELDDAIKKQLGKI 76 (448)
T ss_dssp HHHHHHHHBCCTTCCHHHH-HHSCCEEEEEEBT--EEEETTSC----EEEETTHHHHTCSSCBS-CHHHHHHHHHHHTTC
T ss_pred HHHhhhhcccccccccccc-cCCCceEEEeeeC--EEEECCCC----EEEECCcchhhccCCCC-CHHHHHHHHHHHHhc
Confidence 4455667899999886554 2457889998776 79999999 99999999999999999 999999999999998
Q ss_pred ccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEE
Q 005009 433 GHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (719)
Q Consensus 433 ~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~ 512 (719)
.+.+...+.++...+|+++|++..|.+ .++|+|+|||+|||+.|+|++ +.+....|. ++|.+||++
T Consensus 77 ~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~sGseA~~~al~~~-~~~~~~~G~------------~~~~~vi~~ 142 (448)
T 3dod_A 77 AHSTLLGMTNVPATQLAETLIDISPKK-LTRVFYSDSGAEAMEIALKMA-FQYWKNIGK------------PEKQKFIAM 142 (448)
T ss_dssp SCCCCSSSEEHHHHHHHHHHHHHSCTT-EEEEEEESSHHHHHHHHHHHH-HHHHHHTTC------------TTCCEEEEE
T ss_pred cCccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCchHHHHHHHHHHH-HHHHHhhCC------------CCCCEEEEE
Confidence 765444567889999999999988744 689999999999999999999 565322221 346799999
Q ss_pred eCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccC
Q 005009 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (719)
Q Consensus 513 ~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d 592 (719)
+++|||.+.+++++++...++.. +.+ ...+..+++.|++|+++ . .+
T Consensus 143 ~~~yhg~~~~~~~~~~~~~~~~~--------~~~--------~~~~~~~~~~~~~~~~~-~-----------------~~ 188 (448)
T 3dod_A 143 KNGYHGDTIGAVSVGSIELFHHV--------YGP--------LMFESYKAPIPYVYRSE-S-----------------GD 188 (448)
T ss_dssp C---------------------------------------------CEEECCCCCTTSS-S-----------------CC
T ss_pred CCCCCCccHHHHHhcCCcccccc--------ccC--------CCCCceEeCCCccccCC-c-----------------cc
Confidence 99999999999999886544432 111 01234567777776542 0 01
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc-cCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc
Q 005009 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH-AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV 671 (719)
Q Consensus 593 ~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViq-g~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~ 671 (719)
...+...+.+.|++.|.+ +++++++||+||+ + +++|+++++++|+++|+++|++||++||+|||||||||+|+
T Consensus 189 ~~~~~~~d~~~le~~l~~-----~~~~~a~vi~ep~-~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~ 262 (448)
T 3dod_A 189 PDECRDQCLRELAQLLEE-----HHEEIAALSIESM-VQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGK 262 (448)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HGGGEEEEEEESS-EESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS
T ss_pred hhhhhHHHHHHHHHHHHh-----CCCCEEEEEEeCc-ccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc
Confidence 122333446788888862 3468999999998 8 99999999999999999999999999999999999999999
Q ss_pred cccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 672 ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 672 ~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
+|+++++++.||++|+||++|+||+|+|++++++++++.+..
T Consensus 263 ~~a~~~~~~~~di~t~sK~l~~G~~~ig~v~~~~~~~~~~~~ 304 (448)
T 3dod_A 263 MFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYD 304 (448)
T ss_dssp SSGGGGGTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHTTCS
T ss_pred hhhhhhcCCCCCEEEecccccCCcCceEEEEECHHHHHHhhh
Confidence 999999999999999999999997799999999999998864
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-46 Score=420.47 Aligned_cols=290 Identities=30% Similarity=0.461 Sum_probs=234.1
Q ss_pred cchhhCCCccccCCCC-CCCCCCCeEEEEeecCCceEEEeC-CCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhh
Q 005009 353 MPKRAGELFWWPFTQH-KLVPEEAVTVIDSRCGENFSVYQD-QKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAA 430 (719)
Q Consensus 353 L~e~~~~~~~~p~~~~-~~~~~~~p~vi~~~~G~g~~l~D~-dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~ 430 (719)
+.+++.+++|+||+++ +. ...|.++++++|. |+||. ||| ..+||||+|++|++++||+ ||+|++|+++|++
T Consensus 33 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~G~--~l~d~~dG~--~~~ylD~~s~~~~~~lGh~-~p~v~~A~~~~~~ 105 (457)
T 3tfu_A 33 IIAVDGAHLWHPYSSIGRE--AVSPVVAVAAHGA--WLTLIRDGQ--PIEVLDAMSSWWTAIHGHG-HPALDQALTTQLR 105 (457)
T ss_dssp HHHHHHHHBCCTTCCSSCC--SSCCEEEEEEEBT--EEEEEETTE--EEEEEETTHHHHTCTTCBT-CHHHHHHHHHHHH
T ss_pred HHHHHHhhcCccccccccc--CCCCceEEeeecC--EEEEccCCC--eeEEEECCCcHhhhccCCC-CHHHHHHHHHHHH
Confidence 3345567799999986 32 3568899998886 79999 995 1279999999999999999 9999999999999
Q ss_pred hcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEE
Q 005009 431 RFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVL 510 (719)
Q Consensus 431 ~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII 510 (719)
++.+.++..+.++...+|+++|++..|.+ .++|+|+|||+||||.|+|++ +.|+..+|. ++|.+||
T Consensus 106 ~~~~~~~~~~~~~~~~~L~e~la~~~~~~-~~~v~~~~sGseA~~~Alk~a-~~~~~~~g~------------~g~~~ii 171 (457)
T 3tfu_A 106 VMNHVMFGGLTHEPAARLAKLLVDITPAG-LDTVFFSDSGSVSVEVAAKMA-LQYWRGRGL------------PGKRRLM 171 (457)
T ss_dssp HCSCCCSSSEECHHHHHHHHHHHHHSSTT-EEEEEEESSHHHHHHHHHHHH-HHHHHHTTC------------TTCCEEE
T ss_pred hccCccccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCcHHHHHHHHHHHH-HHHHHhcCC------------CCCceEE
Confidence 98876655567899999999999998744 689999999999999999999 666444433 5577999
Q ss_pred EEeCCcccCccccccccC-CCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhc
Q 005009 511 ALKGSYHGDTLGAMEAQA-PSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYE 589 (719)
Q Consensus 511 ~~~~syHG~t~galslt~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~ 589 (719)
+++++|||.|.+++++++ ...|+.. + .+ ...+...++.|..- +.
T Consensus 172 ~~~~~yhg~~~~~~~~~~~~~~~~~~----~----~~--------~~~~~~~~~~p~~~-----------~~-------- 216 (457)
T 3tfu_A 172 TWRGGYHGDTFLAMSICDPHGGMHSL----W----TD--------VLAAQVFAPQVPRD-----------YD-------- 216 (457)
T ss_dssp EETTCCCCSSHHHHTTSCCC--------------------------CCCCEEECCCCSS-----------CC--------
T ss_pred EEcCCcCCccHHhhcccCCccccccc----c----cC--------CCCCceEecCCCcc-----------cC--------
Confidence 999999999999999965 2223221 0 00 01123344444210 00
Q ss_pred ccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcc-ccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccc
Q 005009 590 ERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEP-VVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR 668 (719)
Q Consensus 590 ~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEP-Viqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGR 668 (719)
....+.|++.|++ .++++++||+|| + |+++|+++++++|+++|+++|++||++||+|||||||||
T Consensus 217 --------~~d~~~le~~l~~-----~~~~~aavi~ep~~-~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr 282 (457)
T 3tfu_A 217 --------PAYSAAFEAQLAQ-----HAGELAAVVVEPVV-QGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGR 282 (457)
T ss_dssp --------HHHHHHHHHHHHH-----HGGGEEEEEECSSE-ECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTT
T ss_pred --------HHHHHHHHHHHHh-----CCCCEEEEEEeCCC-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCcc
Confidence 0124677888863 246899999999 6 999999999999999999999999999999999999999
Q ss_pred cCccccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhc
Q 005009 669 LGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 669 tG~~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
+|++|+++++|+.||++||||+|||||+|+|++++++++++.+.
T Consensus 283 ~G~~~a~~~~~~~pdiit~sK~l~gG~~~lG~v~~~~~i~~~~~ 326 (457)
T 3tfu_A 283 TGALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTIS 326 (457)
T ss_dssp TSSSSTHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHH
T ss_pred ccchhHhHhcCCCceEEEEChhhhCCCcceEEEEEcHHHHHHhh
Confidence 99999999999999999999999999889999999999999884
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-45 Score=405.90 Aligned_cols=295 Identities=23% Similarity=0.318 Sum_probs=240.0
Q ss_pred ccchhhCCCccc---cCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHh
Q 005009 352 DMPKRAGELFWW---PFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYT 428 (719)
Q Consensus 352 ~L~e~~~~~~~~---p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q 428 (719)
.+.+++.+++|+ ||++ ..|.++++++|. |+||.||+ +||||++++|++++||+ ||+|++|+++|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~------~~p~~~~~~~G~--~v~d~~g~----~~lD~~~~~~~~~lG~~-~p~v~~A~~~~ 77 (452)
T 3n5m_A 11 ELLAKDEQYVWHGMRPFSP------NSTTVGAKAEGC--WVEDIQGK----RYLDGMSGLWCVNSGYG-RKELAEAAYKQ 77 (452)
T ss_dssp HHHHHHHHHBCCTTSCSCG------GGCCEEEEEEBT--EEEETTCC----EEEETTHHHHTCTTCBC-CHHHHHHHHHH
T ss_pred HHHHHhhhhcccccccccc------CCCceEEEeeeC--EEEECCCC----EEEECCcchhhccCCCC-CHHHHHHHHHH
Confidence 455566777888 4432 467899998886 79999999 99999999999999999 99999999999
Q ss_pred hhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceE
Q 005009 429 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELK 508 (719)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~k 508 (719)
++++.+ ....+.++...+|+++|++..+.+ .+ |+|++||+|||+.|+|++ +.|+...|. +++.+
T Consensus 78 ~~~~~~-~~~~~~~~~~~~la~~l~~~~~~~-~~-v~~~~ggseA~~~al~~~-~~~~~~~g~------------~~~~~ 141 (452)
T 3n5m_A 78 LQTLSY-FPMSQSHEPAIKLAEKLNEWLGGE-YV-IFFSNSGSEANETAFKIA-RQYYAQKGE------------PHRYK 141 (452)
T ss_dssp HTTCCC-CCTTSEEHHHHHHHHHHHHHHTSC-EE-EEEESSHHHHHHHHHHHH-HHHHHTTTC------------TTCCE
T ss_pred HHhcCC-cccccCCHHHHHHHHHHHHhCCCC-ce-EEEeCchHHHHHHHHHHH-HHHHHhcCC------------CCCCE
Confidence 999877 334567889999999999988754 45 999999999999999999 566433322 35679
Q ss_pred EEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhh
Q 005009 509 VLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFY 588 (719)
Q Consensus 509 II~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~ 588 (719)
||+++++|||.+.+++++++...++.. +.+ ..++..+++.|++++++ +||..
T Consensus 142 vi~~~~~yhg~~~~~~~~~~~~~~~~~--------~~~--------~~~~~~~~~~~~~~~~~--------~~~~~---- 193 (452)
T 3n5m_A 142 FMSRYRGYHGNTMATMAATGQAQRRYQ--------YEP--------FASGFLHVTPPDCYRMP--------GIERE---- 193 (452)
T ss_dssp EEEETTCCCCSSHHHHHSCCCGGGTTT--------TCC--------CCSCEEEECCCCTTTST--------TTTTS----
T ss_pred EEEECCCcCCCCHHHHhcCCchhhccc--------cCC--------CCCCCeEeCCCccccCc--------cCCch----
Confidence 999999999999999999886554432 000 11245567777776542 44421
Q ss_pred cccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccc
Q 005009 589 EERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR 668 (719)
Q Consensus 589 ~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGR 668 (719)
+.+...+.+.|++.+.+ .+++++++||+||++|+ +|+++++++|+++|+++|++||++||+|||||||||
T Consensus 194 -----~~~~~~~~~~le~~l~~----~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~ 263 (452)
T 3n5m_A 194 -----NIYDVECVKEVDRVMTW----ELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGR 263 (452)
T ss_dssp -----CGGGCHHHHHHHHHHHH----HCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTT
T ss_pred -----hhHHHHHHHHHHHHHHh----cCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCc
Confidence 12233456788888863 23468999999996479 999999999999999999999999999999999999
Q ss_pred cCccccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 669 LGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 669 tG~~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
+|++|+++++++.||++|+||++|+||+|+|++++++++++.+..
T Consensus 264 ~g~~~~~~~~~~~~di~t~sK~l~~G~~~ig~~~~~~~i~~~~~~ 308 (452)
T 3n5m_A 264 TGKAFGFMNYDVKPDIITMAKGITSAYLPLSATAVKREIYEAFKG 308 (452)
T ss_dssp TSSSSGGGGTTCCCSEEEECGGGGTTSSCCEEEEEEHHHHGGGCS
T ss_pred ccccchhhhcCCCCCEEeecccccCCCcceEEEEECHHHHHHHhh
Confidence 999999999999999999999999998899999999999999854
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-44 Score=405.16 Aligned_cols=276 Identities=22% Similarity=0.248 Sum_probs=225.5
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|+++++++|. |+||.||+ +||||+++++++++||+ ||+|++|+++|++++.+.....+.++...+|+++|++
T Consensus 43 ~p~~~~~g~G~--~v~d~~g~----~ylD~~~~~~~~~lGh~-~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~ 115 (451)
T 3oks_A 43 MPVYAVRAGGG--IVEDVDGN----RLIDLGSGIAVTTVGNS-APKVVEAVRSQVGDFTHTCFMVTPYEGYVAVCEQLNR 115 (451)
T ss_dssp CSSCEEEEETT--EEEETTSC----EEEESSHHHHTCTTCTT-CHHHHHHHHHHHTTCSCCTTTTSCCHHHHHHHHHHHH
T ss_pred CCceEEEeecC--EEEECCCC----EEEEcCCCccccccCCC-CHHHHHHHHHHHHhcccccCCccCCHHHHHHHHHHHH
Confidence 46788888776 79999999 99999999999999999 9999999999999987765455778999999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCC-CCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYT 533 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~-~~~ 533 (719)
..|....++|+|+|||+|||++|+|+| +.++++ .+||+++++|||.|.+++++++.. .|+
T Consensus 116 ~~~~~~~~~v~~~~sGseA~~~Alk~a-~~~~g~------------------~~ii~~~~~yhG~~~~~~~~~~~~~~~~ 176 (451)
T 3oks_A 116 LTPVRGDKRSALFNSGSEAVENAVKIA-RSHTHK------------------PAVVAFDHAYHGRTNLTMALTAKVMPYK 176 (451)
T ss_dssp HSSCCSSEEEEEESSHHHHHHHHHHHH-HHHHCC------------------CEEEEETTCCCCSSHHHHHHCCCCTTTT
T ss_pred hCCcCCCCEEEEeCcHHHHHHHHHHHH-HHhcCC------------------CeEEEEcCCcCCccHHHHHhcCCCcccc
Confidence 887433579999999999999999999 666543 589999999999999999998753 333
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
.. +.+ ...+..++++|++|+.+. . +.+.+.+...+.+.+++.|++.
T Consensus 177 ~~--------~~~--------~~~~~~~~~~~~~~~~~~--------~--------g~~~~~~~~~~~~~~~~~l~~~-- 222 (451)
T 3oks_A 177 DG--------FGP--------FAPEIYRAPLSYPFRDAE--------F--------GKELATDGELAAKRAITVIDKQ-- 222 (451)
T ss_dssp TT--------CCS--------CCSSEEEECCCCHHHHGG--------G--------CTTTTTCHHHHHHHHHHHHHHH--
T ss_pred cC--------CCC--------CCCCcEEeCCCccccccc--------c--------ccccchhhHHHHHHHHHHHHhh--
Confidence 32 111 123456777776664310 0 0011122233345555555531
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCC
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lgg 693 (719)
..++++++||+||+ +++||++.++++|+++|+++|++||++||+||||+||||+|++|+++++++.||++||||++++
T Consensus 223 -~~~~~~aavi~ep~-~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t~sK~l~~ 300 (451)
T 3oks_A 223 -IGADNLAAVVIEPI-QGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLIVTAKGIAG 300 (451)
T ss_dssp -TCGGGEEEEEECSS-BTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGT
T ss_pred -cCCCCEEEEEEcCC-cCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccchhhhhcCCCCCeeeehhhhhC
Confidence 23568999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchheeEeCHHHHhhhcC
Q 005009 694 GVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~~ 713 (719)
| +|+|++++++++++.+..
T Consensus 301 G-~~iG~v~~~~~~~~~~~~ 319 (451)
T 3oks_A 301 G-LPLSAVTGRAEIMDSPHV 319 (451)
T ss_dssp T-SSCEEEEEEHHHHTCSCT
T ss_pred C-cceEEEEECHHHHhhhcC
Confidence 9 799999999999998753
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-44 Score=403.03 Aligned_cols=271 Identities=27% Similarity=0.310 Sum_probs=222.3
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|+++++++|. |+||.||+ +||||+++++++++||+ ||+|++|+++|++++.+.....+.++...+|+++|++
T Consensus 46 ~p~~~~~~~G~--~v~d~~G~----~ylD~~~~~~~~~lGh~-~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~ 118 (453)
T 4ffc_A 46 APVYAVDADGG--VIVDADGN----SFIDLGAGIAVTTVGAS-HPAVAAAIADQATHFTHTCFMVTPYEQYVQVAELLNA 118 (453)
T ss_dssp CSSCEEEEETT--EEEETTSC----EEEESSHHHHTCTTCTT-CHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHH
T ss_pred CCceEEeeecC--EEEeCCCC----EEEEcCCCcccCcCCCC-CHHHHHHHHHHHHhccccccCcCCCHHHHHHHHHHHH
Confidence 46788888776 79999999 99999999999999999 9999999999999987765455678999999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCC-CCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYT 533 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~-~~~ 533 (719)
..|....++|+|+|||+|||++|||+| |.++++ .+||+++++|||++.+++++++.. .|+
T Consensus 119 ~~~~~~~~~v~~~~sGseA~~~alk~a-~~~~g~------------------~~ii~~~~~yhg~~~~~~~~~~~~~~~~ 179 (453)
T 4ffc_A 119 LTPGDHDKRTALFNSGAEAVENAIKVA-RLATGR------------------PAVVAFDNAYHGRTNLTMALTAKSMPYK 179 (453)
T ss_dssp HSSCSSCEEEEEESSHHHHHHHHHHHH-HHHHCC------------------CEEEEETTCCCCSSHHHHHHCCCCTTTT
T ss_pred hCCCCCCcEEEEeCcHHHHHHHHHHHH-HHhcCC------------------CEEEEEcCccCCcchHHHhhcCCCcccc
Confidence 887433579999999999999999999 666543 589999999999999999998753 333
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
.. +.+ ..++..++++|.+|+.+ . +.+.++....+.+.+++.+.
T Consensus 180 ~~--------~~~--------~~~~~~~~~~~~~~~~~------------~-----g~~~~~~~~~~~~~l~~~i~---- 222 (453)
T 4ffc_A 180 SQ--------FGP--------FAPEVYRMPASYPLRDE------------P-----GLTGEEAARRAISRIETQIG---- 222 (453)
T ss_dssp TT--------SCS--------CCSSEEEECCCCTTTSC------------T-----TCCHHHHHHHHHHHHHHHTC----
T ss_pred cC--------CCC--------CCCCcEEeCCCccccCc------------c-----ccchHHHHHHHHHHHHHhcC----
Confidence 21 111 11345566777554321 0 01111222333455555442
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCC
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lgg 693 (719)
++++++||+||+ +++||+++++++|+++|+++|++||++||+|||||||||+|++|+++++|+.||++||||++++
T Consensus 223 ---~~~~aavi~ep~-~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~~pdi~t~sK~~~~ 298 (453)
T 4ffc_A 223 ---AQSLAAIIIEPI-QGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGIVPDIVTMAKGIAG 298 (453)
T ss_dssp ---GGGEEEEEECSS-BTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGT
T ss_pred ---CCCEEEEEEcCC-CCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccchhhhcCCCcchHhhhhhhcC
Confidence 468999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchheeEeCHHHHhhhcC
Q 005009 694 GVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~~ 713 (719)
| +|+|++++++++++.+..
T Consensus 299 G-~~~G~~~~~~~i~~~~~~ 317 (453)
T 4ffc_A 299 G-MPLSAVTGRAELMDAVYA 317 (453)
T ss_dssp T-SSCEEEEEEHHHHTTSCT
T ss_pred C-cCeEEEEECHHHHhhhcc
Confidence 9 799999999999998763
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-43 Score=398.02 Aligned_cols=285 Identities=18% Similarity=0.159 Sum_probs=228.1
Q ss_pred hhhhHHHHHHHHHHHHHHhhcccchhhCCCccccCCCC-CCCCCCCeEEEEeecCCceEEEeCCCCcccceeeecccccc
Q 005009 331 VFDSLKNIMLLAYSERIQRLCDMPKRAGELFWWPFTQH-KLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWW 409 (719)
Q Consensus 331 ~v~~Ll~~l~~~~~~r~~rl~~L~e~~~~~~~~p~~~~-~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~ 409 (719)
.+..++..+..+|.++..+.+++.+++.+++....... ..+ ...|+++++++|. |+||.||| +||||+++++
T Consensus 38 ~~~~~~~~~~~~~~~~~~~s~~l~~~~~~~~~~g~~~~~~~~-~~~p~~~~~~~G~--~l~D~dG~----~yiD~~~~~~ 110 (465)
T 2yky_A 38 EKAQAIAAARNTFARDNPVSAGHHERARRSMPGGNTRSILFH-RPFPLVIAQGTGS--RFQDVDGH----AYVNFLGEYT 110 (465)
Confidence 35555666677787778888888888877664311111 111 1247888887775 79999999 9999999999
Q ss_pred ccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccc
Q 005009 410 TQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDH 489 (719)
Q Consensus 410 ~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~ 489 (719)
++++||+ ||+|++|+++|+++... ..+.++...+|+++|+++.| + .++|+|+|||+||||+|||+| |.++++
T Consensus 111 ~~~lGh~-~p~V~~Av~~q~~~~~~---~~~~~~~~~~Lae~L~~~~p-~-~~~v~~~nSGseA~~~Aik~a-r~~tgr- 182 (465)
T 2yky_A 111 AGLFGHS-HPVIRAAVERALAVGLN---LSTQTENEALFAEAVCDRFP-S-IDLVRFTNSGTEANLMALATA-TAITGR- 182 (465)
Confidence 9999999 99999999999998432 24578899999999999986 3 689999999999999999999 766543
Q ss_pred cccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhh
Q 005009 490 EVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLY 569 (719)
Q Consensus 490 G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~ 569 (719)
.+||+++++|||++.+++ ++ + ... + + |. ..+.+
T Consensus 183 -----------------~~ii~~~~~yHG~~~~~~--sg-~-~~~--------g----~--~~-------~~~~~----- 215 (465)
T 2yky_A 183 -----------------KTVLAFDGGYHGGLLNFA--SG-H-APT--------N----A--PY-------HVVLG----- 215 (465)
Confidence 589999999999999888 43 1 000 0 0 00 01111
Q ss_pred hcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHH
Q 005009 570 SKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKE 649 (719)
Q Consensus 570 ~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~L 649 (719)
+|||. +.|++.+++ .++++++||+||+ ++++|+++++++|+++|+++
T Consensus 216 ---------~~~d~------------------~~l~~~l~~-----~~~~~aavi~epv-~~~~G~~~~~~~~l~~l~~l 262 (465)
T 2yky_A 216 ---------VYNDV------------------EGTADLLKR-----HGHDCAAILVEPM-LGAGGCVPAERAFLDLLRAE 262 (465)
Confidence 24442 456666653 2468999999998 99999999999999999999
Q ss_pred HHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 650 CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 650 c~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
|++||++||+||||| | |+|++|+++++|+.|||+||||++||| +|+|++++++++++.+..
T Consensus 263 ~~~~g~llI~DEv~~-~-r~g~~~a~~~~gv~pDi~t~sK~lg~G-~piG~v~~~~~i~~~l~~ 323 (465)
T 2yky_A 263 ASRCGALLIFDEVMT-S-RLSGGGAQEMLGISADLTTLGKYIGGG-MSFGAFGGRRDLMERFDP 323 (465)
Confidence 999999999999999 6 999999999999999999999999999 799999999999998764
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-40 Score=365.90 Aligned_cols=282 Identities=24% Similarity=0.271 Sum_probs=213.5
Q ss_pred CCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCC
Q 005009 359 ELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFP 438 (719)
Q Consensus 359 ~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~ 438 (719)
+++||||. ..|.++++++|. |+||.||+ +|||++++++++++||+ ||+|++|+++|++++.+.+..
T Consensus 2 ~~~~~~~~-------~~~~~~~~~~G~--~~~d~~g~----~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~~~ 67 (430)
T 3i4j_A 2 SNVFYRSS-------KPYPVAVRGEGV--FLYDDAGR----RYLDGSSGALVANIGHG-RAEVGERMAAQAARLPFVHGS 67 (430)
T ss_dssp -CBCCSSS-------SCCCEEEEEEBT--EEEETTSC----EEEETTHHHHTCTTCBC-CHHHHHHHHHHHHHCCCCCTT
T ss_pred CccccCCC-------CCCceEEeeecC--EEEECCCC----EEEECCCchhccccCCC-CHHHHHHHHHHHHhccccccc
Confidence 46899982 347788888776 79999999 99999999999999999 999999999999987765544
Q ss_pred CCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCccc
Q 005009 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (719)
Q Consensus 439 ~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG 518 (719)
.+.++...+|+++|++..+.+ .++|+|+|||+||++.|+|++ +.+...+|. +++.+||+++.+|||
T Consensus 68 ~~~~~~~~~l~~~la~~~~~~-~~~v~~~~gg~ea~~~al~~~-~~~~~~~g~------------~~~~~vi~~~~~yhg 133 (430)
T 3i4j_A 68 QFSSDVLEEYAGRLARFVGLP-TFRFWAVSGGSEATESAVKLA-RQYHVERGE------------PGRFKVITRVPSYHG 133 (430)
T ss_dssp TCEEHHHHHHHHHHHHHTTCT-TCEEEEESSHHHHHHHHHHHH-HHHHHHTTC------------TTCCEEEEETTC---
T ss_pred ccCCHHHHHHHHHHHHhCCCC-CCEEEEeCcHHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEEeCCcCC
Confidence 566788999999999988744 579999999999999999999 555444432 456799999999999
Q ss_pred CccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHH
Q 005009 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (719)
Q Consensus 519 ~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~ 598 (719)
.+.+++++++...++.. +.+. . | ..+...++.|+.|++ ..
T Consensus 134 ~~~~~~~~~~~~~~~~~--------~~~~-~-~----~~~~~~~~~~~~~~~--------------------------~~ 173 (430)
T 3i4j_A 134 ASLGSLAASGMGARREL--------YTPL-M-R----PEAWPKLPKPDPARN--------------------------GA 173 (430)
T ss_dssp --------------------------------C----GGGSCEECCCCTTSC--------------------------HH
T ss_pred CCcccccccCccccccc--------cCCc-C-C----CCCceEcCCCcccch--------------------------hh
Confidence 99999998875443321 0000 0 0 002344555544321 11
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEcccccc-CCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccc
Q 005009 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHA-AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677 (719)
Q Consensus 599 ~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg-~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~ 677 (719)
...+.|++.+++ .+++++++||+||+ +| ++|+++++++|+++|+++|++||++||+||||+||||+|+++++++
T Consensus 174 ~~~~~le~~l~~----~~~~~~~~vi~~p~-~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~~~~~~ 248 (430)
T 3i4j_A 174 EDAEGLRALLER----EGPETVAAFMAEPV-VGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSR 248 (430)
T ss_dssp HHHTHHHHHHHH----HCGGGEEEEEECSS-CCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGG
T ss_pred HHHHHHHHHHHh----cCCCCEEEEEEcCc-ccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhhh
Confidence 224667777764 22368999999998 99 9999999999999999999999999999999999999999999999
Q ss_pred c-CCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 678 L-GCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 678 ~-gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
+ ++.||++||||++|+||+|+|++++++++++.+..
T Consensus 249 ~~~~~~di~t~sK~l~~G~~r~G~~~~~~~i~~~~~~ 285 (430)
T 3i4j_A 249 WSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMG 285 (430)
T ss_dssp TTTCCCSEEEECGGGTTTSSCCEEEEECHHHHHHHHH
T ss_pred hcCCCCcEEEEcccccCCccccEEEEECHHHHHHHhc
Confidence 9 99999999999999998899999999999998864
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-40 Score=365.95 Aligned_cols=302 Identities=19% Similarity=0.292 Sum_probs=237.2
Q ss_pred cchhhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhc
Q 005009 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (719)
Q Consensus 353 L~e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~ 432 (719)
..+++.+++|+||++++.+. ..|.++.+++|. ++||.+|+ +|||+.+++|++++||+ ||+|++|+.+|++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~--~~~d~~g~----~~lD~~~~~~~~~lG~~-~~~v~~a~~~~~~~~ 82 (449)
T 3a8u_X 11 ASQLKLDAHWMPYTANRNFL-RDPRLIVAAEGS--WLVDDKGR----KVYDSLSGLWTCGAGHT-RKEIQEAVAKQLSTL 82 (449)
T ss_dssp GGGSCGGGSCCTTSCHHHHH-HSCCCEEEEEBT--EEEETTCC----EEEETTHHHHTCTTCBS-CHHHHHHHHHHTTTC
T ss_pred HHhhhhcccccccccccccc-CCCceEEeeecC--EEEECCCC----EEEECCccHhhccCCCC-CHHHHHHHHHHHHhC
Confidence 44566788999999864432 257788887776 79999999 99999999999999999 999999999999886
Q ss_pred ccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEE
Q 005009 433 GHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (719)
Q Consensus 433 ~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~ 512 (719)
....+..+.++...+++++|++.++.+ .++++|++||+||++.|++++ +.|+..+|. +++.+||++
T Consensus 83 ~~~~~~~~~~~~~~~l~~~la~~~~~~-~~~v~~~~ggsea~~~al~~~-~~~~~~~g~------------~~~~~vi~~ 148 (449)
T 3a8u_X 83 DYSPGFQYGHPLSFQLAEKITDLTPGN-LNHVFFTDSGSECALTAVKMV-RAYWRLKGQ------------ATKTKMIGR 148 (449)
T ss_dssp SCCCSSSCCCHHHHHHHHHHHTTSSTT-EEEEEEESSHHHHHHHHHHHH-HHHHHHTTC------------TTCCEEEEE
T ss_pred CCccccccCCHHHHHHHHHHHHhCCCC-CCEEEEcCcHHHHHHHHHHHH-HHHHHhcCC------------CCCCEEEEE
Confidence 522221466888999999999988643 579999999999999999999 666654433 456789999
Q ss_pred eCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccC
Q 005009 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (719)
Q Consensus 513 ~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d 592 (719)
+.+|||.+.+++++++...++.. +++. ..+...++.|..|++. |.. .|
T Consensus 149 ~~~yhg~~~~~~~~~g~~~~~~~--------~~~~--------~~~~~~v~~~~~~~~~--------~~~--------~d 196 (449)
T 3a8u_X 149 ARGYHGVNIAGTSLGGVNGNRKL--------FGQP--------MQDVDHLPHTLLASNA--------YSR--------GM 196 (449)
T ss_dssp TTCCCCSSHHHHHHCCCHHHHTT--------TCCC--------SCSEEEECCCCCGGGT--------TCS--------SS
T ss_pred CCCcCCCChhhhhccCChhhccc--------cCCC--------CCCCeEecCCccccCc--------ccc--------CC
Confidence 99999999988888864433221 1110 1233455555444210 000 01
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc
Q 005009 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (719)
Q Consensus 593 ~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~ 672 (719)
.+++...+.+.|++.+.+ .+++++++||+||+ ++.+|++.+|++|+++|+++|++||++||+|||||||||+|++
T Consensus 197 ~~~~~~~~~~~le~~l~~----~~~~~~~~vi~~p~-~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~ 271 (449)
T 3a8u_X 197 PKEGGIALADELLKLIEL----HDASNIAAVFVEPL-AGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSM 271 (449)
T ss_dssp CSSSHHHHHHHHHHHHHH----HCGGGEEEEEECSS-BTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred hHHHHHHHHHHHHHHHHh----cCCCCEEEEEEcCc-cCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCcc
Confidence 112233446778888863 12358999999998 9999999999999999999999999999999999999999999
Q ss_pred ccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 673 ~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
|+++++++.||++|+||++++||+|+|++++++++++.+..
T Consensus 272 ~~~~~~~~~~di~s~sK~l~~G~~~~G~~~~~~~~~~~l~~ 312 (449)
T 3a8u_X 272 FGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMN 312 (449)
T ss_dssp SHHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHT
T ss_pred hhhhhcCCCCCEEEEcccccCCCCceEEEEECHHHHHHhhc
Confidence 99999999999999999999998899999999999998865
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-39 Score=359.10 Aligned_cols=258 Identities=21% Similarity=0.280 Sum_probs=196.6
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. |+||.||+ +|||+.+|+++.++||+ ||+|++|+++|++++.+.+. .+.++...+|+++|++
T Consensus 47 ~~~~~~~~~g~--~~~d~~G~----~ylD~~~g~~~~~lgh~-~p~v~~ai~~~~~~~~~~~~-~~~~~~~~~l~~~la~ 118 (433)
T 1z7d_A 47 IPVVLKRAKGV--FVYDVNDK----RYYDFLSAYSSVNQGHC-HPNILNAMINQAKNLTICSR-AFFSVPLGICERYLTN 118 (433)
T ss_dssp EEEEEEEEEBT--EEEETTCC----EEEESSHHHHTTTTCBT-CHHHHHHHHHHHTTCSCCCT-TSEEHHHHHHHHHHHH
T ss_pred CCceEEeeecC--EEEECCCC----EEEEcccchhhcccCCC-CHHHHHHHHHHHHhCCCccC-CcCCHHHHHHHHHHHh
Confidence 47788888776 79999999 99999999999999999 99999999999998765432 3567889999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhh-ccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFS-FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~-~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~ 533 (719)
..+ .++++|+|||+||++.|+|++ +.|+ ..+|. .++|.+||+++++|||.+.+++++++...++
T Consensus 119 ~~g---~~~v~~~~sGseA~~~al~~a-~~~~~~~~g~-----------~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~ 183 (433)
T 1z7d_A 119 LLG---YDKVLMMNTGAEANETAYKLC-RKWGYEVKKI-----------PENMAKIVVCKNNFSGRTLGCISASTTKKCT 183 (433)
T ss_dssp HHT---CSEEEEESSHHHHHHHHHHHH-HHHHHHTSCC-----------CTTCCEEEEETTC------------------
T ss_pred hcC---CCeEEEeCCHHHHHHHHHHHH-HHHhhhccCC-----------CCCCCeEEEEeCCcCCcchhhhcccCCcccc
Confidence 886 479999999999999999999 5542 11111 1345799999999999999998887643332
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
.. +++.. .+...+ +++| .+.+++.++
T Consensus 184 ~~--------~~p~~--------~~v~~~----------------~~~d------------------~~~le~~l~---- 209 (433)
T 1z7d_A 184 SN--------FGPFA--------PQFSKV----------------PYDD------------------LEALEEELK---- 209 (433)
T ss_dssp ------------------------CEEEE----------------CTTC------------------HHHHHHHHT----
T ss_pred cc--------CCCCC--------CCeEEe----------------CCCC------------------HHHHHHHhC----
Confidence 21 11100 011111 1333 256777774
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCC
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lgg 693 (719)
.+++++||+||+ ++++|++++|++|+++|+++|++||++||+||||+||||+|++|+++++|+.||++|+||++|+
T Consensus 210 ---~~~~~~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l~~ 285 (433)
T 1z7d_A 210 ---DPNVCAFIVEPI-QGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVILLGKALSG 285 (433)
T ss_dssp ---STTEEEEEECSS-BSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGT
T ss_pred ---CCCEEEEEEECC-CCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcchhhHhcCCCCCEEEECccccC
Confidence 246899999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchheeEeCHHHHhhhcC
Q 005009 694 GVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~~ 713 (719)
||+|+|++++++++++.+..
T Consensus 286 G~~~~G~v~~~~~~~~~l~~ 305 (433)
T 1z7d_A 286 GHYPISAVLANDDIMLVIKP 305 (433)
T ss_dssp TSSCCEEEEECHHHHTTCCT
T ss_pred CCCCeEEEEECHHHHhhhcc
Confidence 98899999999999988764
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-39 Score=355.31 Aligned_cols=258 Identities=22% Similarity=0.290 Sum_probs=200.0
Q ss_pred CCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHH
Q 005009 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (719)
Q Consensus 374 ~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~ 453 (719)
..|+++++++|. |+||.||+ +||||+++++++++||+ ||+|++|+++|+++..+. .+.++...+|+++|+
T Consensus 34 ~~p~~~~~~~G~--~~~d~~g~----~ylD~~~~~~~~~lG~~-~p~v~~A~~~~~~~~~~~---~~~~~~~~~la~~l~ 103 (429)
T 4e77_A 34 GIPLFIERADGA--YLFDVDGK----AYIDYVGSWGPMILGHN-HPAIRQAVIEAVERGLSF---GAPTEMEVKMAQLVT 103 (429)
T ss_dssp SCCCCEEEEEBT--EEEETTCC----EEEESSGGGTTCTTCBT-CHHHHHHHHHHHTTCSCC---SSCCHHHHHHHHHHH
T ss_pred CCCceEEEeecC--EEEECCCC----EEEECCCchhccccCCC-CHHHHHHHHHHHHhCccc---CCCCHHHHHHHHHHH
Confidence 357788888776 79999999 99999999999999999 999999999999986542 356889999999999
Q ss_pred hccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCC
Q 005009 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (719)
Q Consensus 454 ~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~ 533 (719)
+..+. .++++|+|||+|||+.|+|+| |.++++ .+||+++++|||.+..++..++.....
T Consensus 104 ~~~~~--~~~v~~~~sGsea~~~al~~a-~~~~~~------------------~~ii~~~~~yhg~~~~~~~~~~~~~~~ 162 (429)
T 4e77_A 104 DLVPT--MDMVRMVNSGTEATMSAIRLA-RGYTGR------------------DKIIKFEGCYHGHADCLLVKAGSGALT 162 (429)
T ss_dssp HHSTT--CSEEEEESSHHHHHHHHHHHH-HHHHCC------------------CEEEEETTCCCC---------------
T ss_pred hhCCC--CCEEEEeCcHHHHHHHHHHHH-HHhhCC------------------CEEEEEcCccCCCChhhhhhcCCcccc
Confidence 98873 689999999999999999999 666543 589999999999999877666532211
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
.. .+...+ .+. ...++.+ .++++| .+.+++.+++
T Consensus 163 ~~--~~~~~~------~~~---------~~~~~~~--------~~~~~d------------------~~~le~~l~~--- 196 (429)
T 4e77_A 163 LG--QPNSPG------VPT---------DFAKHTL--------TCTYND------------------LASVRQAFEQ--- 196 (429)
T ss_dssp -----CCCTT------SCG---------GGGTTEE--------EECTTC------------------HHHHHHHHHH---
T ss_pred cC--CCCcCC------CCC---------ccCCcee--------ecCCCC------------------HHHHHHHHHh---
Confidence 10 000000 000 0000000 012333 2567777764
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCC
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lgg 693 (719)
.++++++||+||+ ++++|++.++++|+++|+++|++||++||+||||+|| |+|.+++++++++.||++|+||++|+
T Consensus 197 --~~~~~~~vi~ep~-~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~g~~~~~~~~~~~pdi~t~sK~~~~ 272 (429)
T 4e77_A 197 --YPQEVACIIVEPV-AGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVALAGAQDYYHVIPDLTCLGKIIGG 272 (429)
T ss_dssp --STTTEEEEEECSS-BCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-TTBTTCHHHHTTCCCSEEEEEGGGGT
T ss_pred --cCCCEEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-ccCcchHHHhcCCCCCeeeecccccC
Confidence 3467999999998 9999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred CccchheeEeCHHHHhhhcC
Q 005009 694 GVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~~ 713 (719)
| +|+|++++++++++.+..
T Consensus 273 G-~~~G~~~~~~~~~~~l~~ 291 (429)
T 4e77_A 273 G-MPVGAFGGRREVMNALAP 291 (429)
T ss_dssp T-SCCEEEEECHHHHTTBTT
T ss_pred C-CCeEEEEECHHHHHHhcc
Confidence 9 799999999999998864
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-39 Score=355.61 Aligned_cols=258 Identities=21% Similarity=0.314 Sum_probs=206.4
Q ss_pred CCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHH
Q 005009 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (719)
Q Consensus 374 ~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~ 453 (719)
..|.++++++|. |+||.||+ +|||+++++|++++||+ ||+|++|+++|+++... ..+.++...+|+++|+
T Consensus 36 ~~p~~~~~~~G~--~~~d~~g~----~ylD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~---~~~~~~~~~~l~~~la 105 (434)
T 3l44_A 36 GAPIAMERGKGA--YFWDVDGN----KYIDYLAAYGPIITGHA-HPHITKAITTAAENGVL---YGTPTALEVKFAKMLK 105 (434)
T ss_dssp SCCCCEEEEEBT--EEEETTCC----EEEECCGGGTTCSSCBT-CHHHHHHHHHHHHHCSC---CSSCCHHHHHHHHHHH
T ss_pred CCCceEEEeecC--EEEECCCC----EEEECCCchhccccCCC-CHHHHHHHHHHHHhCcC---CCCCCHHHHHHHHHHH
Confidence 357788888776 79999999 99999999999999999 99999999999988532 2456889999999999
Q ss_pred hccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCC
Q 005009 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (719)
Q Consensus 454 ~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~ 533 (719)
+..+. .++++|+|||+||++.|+|++ +.+++ +.+||+++++|||.+.+++++++.....
T Consensus 106 ~~~~~--~~~v~~~~sGsea~~~ai~~a-~~~~~------------------~~~vi~~~~~yhg~~~~~~~~~g~~~~~ 164 (434)
T 3l44_A 106 EAMPA--LDKVRFVNSGTEAVMTTIRVA-RAYTG------------------RTKIMKFAGCYHGHSDLVLVAAGSGPST 164 (434)
T ss_dssp HHCTT--CSEEEEESSHHHHHHHHHHHH-HHHHC------------------CCEEEEETTCCCCSSGGGGBC-------
T ss_pred HhCCC--CCEEEEeCchHHHHHHHHHHH-HHhhC------------------CCEEEEEcCccCCCcHHHHhhcCCcccc
Confidence 98863 689999999999999999999 66643 3589999999999999999888643211
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
.. .+...+ .|.. ..+..+ .++++| .+.+++.+++
T Consensus 165 ~~--~~~~~~------~~~~---------~~~~~~--------~~~~~d------------------~~~le~~l~~--- 198 (434)
T 3l44_A 165 LG--TPDSAG------VPQS---------IAQEVI--------TVPFNN------------------VETLKEALDK--- 198 (434)
T ss_dssp CC--CBSSTT------CCHH---------HHTTEE--------EECTTC------------------HHHHHHHHHH---
T ss_pred cC--CCCcCC------CCCc---------CCCceE--------ecCccc------------------HHHHHHHHHh---
Confidence 10 000000 0000 000000 012333 2567777763
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCC
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lgg 693 (719)
.++++++||+||+ ++++|++.++++|+++|+++|++||++||+||||+|| |+|++++++++++.||++|+||++|+
T Consensus 199 --~~~~~~~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~g~~~~~~~~~~~~di~t~sK~~~~ 274 (434)
T 3l44_A 199 --WGHEVAAILVEPI-VGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMYGGAQDLLGVTPDLTALGKVIGG 274 (434)
T ss_dssp --HGGGEEEEEECSS-BCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TSSSSCHHHHHTCCCSEEEEEGGGGT
T ss_pred --CCCCEEEEEEcCC-CCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce-eccccHHHHHcCCCCCeeehhhhhcC
Confidence 2468999999998 9999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred CccchheeEeCHHHHhhhcC
Q 005009 694 GVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~~ 713 (719)
| +|+|++++++++++.+..
T Consensus 275 G-~~iG~~~~~~~i~~~~~~ 293 (434)
T 3l44_A 275 G-LPIGAYGGKKEIMEQVAP 293 (434)
T ss_dssp T-SSCEEEEECHHHHTTBTT
T ss_pred C-cCeeeEEEcHHHHHhhcc
Confidence 9 799999999999998754
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-39 Score=356.02 Aligned_cols=258 Identities=22% Similarity=0.309 Sum_probs=208.9
Q ss_pred CCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHH
Q 005009 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (719)
Q Consensus 374 ~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~ 453 (719)
..|+++++++|. |+||.||+ +||||++++|+++|||+ ||+|++|+++|+++..+. .+.++...+|+++|+
T Consensus 34 ~~p~~~~~~~G~--~~~d~~g~----~ylD~~~~~~~~~lG~~-~p~v~~A~~~~~~~~~~~---~~~~~~~~~l~~~la 103 (429)
T 3k28_A 34 MNPLFMERGKGS--KVYDIDGN----EYIDYVLSWGPLIHGHA-NDRVVEALKAVAERGTSF---GAPTEIENKLAKLVI 103 (429)
T ss_dssp CCCCCEEEEEBT--EEEETTCC----EEEESCGGGTTCTTCBS-CHHHHHHHHHHHHHCSCC---SSCCHHHHHHHHHHH
T ss_pred CCCceEEEeecC--EEEECCCC----EEEECCCChhhcccCCC-CHHHHHHHHHHHhhCcCc---CCCCHHHHHHHHHHH
Confidence 457888888776 79999999 99999999999999999 999999999999986542 356889999999999
Q ss_pred hccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCC
Q 005009 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (719)
Q Consensus 454 ~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~ 533 (719)
+..+. .++++|+|||+|||+.|+|++ +.+++ +.+||.++++|||.+.+++.+++.....
T Consensus 104 ~~~~~--~~~v~~~~~Gsea~~~ai~~a-~~~~~------------------~~~vi~~~~~yhg~~~~~~~~~g~~~~~ 162 (429)
T 3k28_A 104 ERVPS--IEIVRMVNSGTEATMSALRLA-RGYTG------------------RNKILKFIGCYHGHGDSLLIKAGSGVAT 162 (429)
T ss_dssp HHSTT--CSEEEEESSHHHHHHHHHHHH-HHHHT------------------CCEEEEEETCCCCSCGGGCSSCCTTC--
T ss_pred HhCCC--CCEEEEeCChHHHHHHHHHHH-HHhhC------------------CCEEEEECCCcCCCcHHHHHhcCCcccc
Confidence 98863 689999999999999999999 66654 3589999999999999998887643211
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
.. .|.. ++ +|....... ..++|+| .+.+++.+.+
T Consensus 163 ~~--------------~~~~---~~-----~~~~~~~~~---~~~~~~d------------------~~~le~~l~~--- 196 (429)
T 3k28_A 163 LG--------------LPDS---PG-----VPEGVAKNT---ITVAYND------------------LESVKYAFEQ--- 196 (429)
T ss_dssp -----------------CCC---TT-----CCHHHHTTE---EEEETTC------------------HHHHHHHHHH---
T ss_pred cC--------------CCCc---CC-----CCCcccCce---eecCCCC------------------HHHHHHHHHh---
Confidence 10 0000 00 000000000 0012343 2567777763
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCC
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lgg 693 (719)
.++++++||+||+ ++++|++.++++|+++|+++|++||++||+||||+|| |+|.+++++++++.||++|+||++|+
T Consensus 197 --~~~~~~~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~~~di~t~sK~~~~ 272 (429)
T 3k28_A 197 --FGDDIACVIVEPV-AGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVAYNCGQGYYGVTPDLTCLGKVIGG 272 (429)
T ss_dssp --HGGGEEEEEECSS-BCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSSTTHHHHHHTCCCSEEEECGGGGT
T ss_pred --CCCCEEEEEEcCC-CCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcchHHHHhCCCCceehhhhhhcC
Confidence 2468999999998 9999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred CccchheeEeCHHHHhhhcC
Q 005009 694 GVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~~ 713 (719)
| +|+|++++++++++.+..
T Consensus 273 G-~~iG~~~~~~~~~~~~~~ 291 (429)
T 3k28_A 273 G-LPVGAYGGKAEIMRQVAP 291 (429)
T ss_dssp T-SCCEEEEECHHHHTTBTT
T ss_pred C-CCeEEEEEcHHHHhhhcc
Confidence 9 799999999999998754
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-39 Score=357.73 Aligned_cols=258 Identities=19% Similarity=0.270 Sum_probs=210.0
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. |+||.||+ +||||.+|+++.++||+ ||+|++|+++|++++.+.+. .+.++...+|+++|++
T Consensus 58 ~~~~~~~~~G~--~~~d~~g~----~ylD~~sg~~~~~lgh~-~p~v~~Ai~~~~~~~~~~~~-~~~~~~~~~l~~~la~ 129 (439)
T 2oat_A 58 LPVALERGKGI--YLWDVEGR----KYFDFLSSYSAVNQGHC-HPKIVNALKSQVDKLTLTSR-AFYNNVLGEYEEYITK 129 (439)
T ss_dssp CSCEEEEEEBT--EEEETTCC----EEEESSGGGGTTTTCBT-CHHHHHHHHHHHTTCSCCCT-TSEESSHHHHHHHHHH
T ss_pred CCeeEEeeecC--EEEECCCC----EEEEccCCcccccCCCC-CHHHHHHHHHHHHhcCcccC-ccCCHHHHHHHHHHHH
Confidence 36678887775 89999999 99999999999999999 99999999999998765432 3456788999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhh-ccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFS-FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~-~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~ 533 (719)
+.+ .++++|++||+||++.|+|++ +.|+ .++|. .++|.+||+++++|||.+.+++++++...++
T Consensus 130 ~~g---~~~v~~~~sGseA~~~al~~~-~~~~~~~~g~-----------~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~ 194 (439)
T 2oat_A 130 LFN---YHKVLPMNTGVEAGETACKLA-RKWGYTVKGI-----------QKYKAKIVFAAGNFWGRTLSAISSSTDPTSY 194 (439)
T ss_dssp HHT---CSEEEEESSHHHHHHHHHHHH-HHHHHHTTCC-----------CTTCCEEEEETTCCCCSSHHHHTTCCCHHHH
T ss_pred hcC---CCEEEEeCCHHHHHHHHHHHH-HHHhhhccCC-----------CCCCCeEEEEcCCCCCCCHhHhhcCCChhcc
Confidence 886 479999999999999999999 5543 12211 1345789999999999999988887643222
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
.. +++.. .+...++ ++| .+.+++.++
T Consensus 195 ~~--------~~p~~--------~~v~~~~----------------~~d------------------~~~le~~l~---- 220 (439)
T 2oat_A 195 DG--------FGPFM--------PGFDIIP----------------YND------------------LPALERALQ---- 220 (439)
T ss_dssp TT--------SCSCC--------TTEEEEC----------------SSC------------------HHHHHHHTT----
T ss_pred cC--------CCCCC--------CCeEEeC----------------CCC------------------HHHHHHHhC----
Confidence 11 11110 0111111 333 256777764
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCC
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lgg 693 (719)
.+++++||+||+ ++++|++.++++|+++|+++|++||++||+||||+||||+|++|+++++|+.||++|+||++||
T Consensus 221 ---~~~~~~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~~~~~~~~~~Di~t~sK~l~~ 296 (439)
T 2oat_A 221 ---DPNVAAFMVEPI-QGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLLGKALSG 296 (439)
T ss_dssp ---STTEEEEEECSS-BTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGT
T ss_pred ---CCCEEEEEEECC-CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcchhHHHhCCCCcEEEecccccC
Confidence 246899999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchheeEeCHHHHhhhcC
Q 005009 694 GVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~~ 713 (719)
||+|+|++++++++++.+..
T Consensus 297 G~~~~G~v~~~~~~~~~l~~ 316 (439)
T 2oat_A 297 GLYPVSAVLCDDDIMLTIKP 316 (439)
T ss_dssp TSSCCEEEEECHHHHTTSCT
T ss_pred CCCCeEEEEECHHHHhccCC
Confidence 97899999999999988764
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-38 Score=346.32 Aligned_cols=258 Identities=19% Similarity=0.248 Sum_probs=210.2
Q ss_pred CCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHH
Q 005009 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (719)
Q Consensus 374 ~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~ 453 (719)
..|+++++++|. |+||.||+ +||||.+++|++++||+ ||+|++|+++|+++..+. .+.++...+|+++|+
T Consensus 33 ~~p~~~~~~~G~--~~~d~~g~----~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~---~~~~~~~~~la~~l~ 102 (427)
T 3fq8_A 33 GQPIVFDRVKDA--YAWDVDGN----RYIDYVGTWGPAICGHA-HPEVIEALKVAMEKGTSF---GAPCALENVLAEMVN 102 (427)
T ss_dssp SCCCCEEEEEBT--EEEETTSC----EEEESSGGGTTCTTCBT-CHHHHHHHHHHHTTCSCC---SSCCHHHHHHHHHHH
T ss_pred CCCceEEEeeeC--EEEECCCC----EEEECCCchhhhccCCC-CHHHHHHHHHHHHhCCCc---CCCCHHHHHHHHHHH
Confidence 357888888776 79999999 99999999999999999 999999999999987553 247889999999999
Q ss_pred hccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCC
Q 005009 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (719)
Q Consensus 454 ~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~ 533 (719)
+..+. .++++|+|||+||++.|+|+| +.++++ .+||+++++|||.+..++.+++.....
T Consensus 103 ~~~~~--~~~v~~~~ggsea~~~al~~a-~~~~~~------------------~~vi~~~~~yhg~~~~~~~~~~~~~~~ 161 (427)
T 3fq8_A 103 DAVPS--IEMVRFVNSGTEACMAVLRIM-RAYTGR------------------DKIIKFEGCYHGHADMFLVKAGSGVAT 161 (427)
T ss_dssp HHSTT--CSEEEEESSHHHHHHHHHHHH-HHHHCC------------------CEEEEEETCCCCSCGGGCSSCCTHHHH
T ss_pred HhCCC--CCEEEEeCCHHHHHHHHHHHH-HHhhCC------------------CEEEEECCCcCCCCHHHHHhcCCcccc
Confidence 98863 589999999999999999999 666543 489999999999999988877643211
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
.. .++.. +......++.. .++|+| .+.+++.+.+
T Consensus 162 ~~--~~~~~---------------~~~~~~~~~~~--------~~~~~d------------------~~~le~~l~~--- 195 (427)
T 3fq8_A 162 LG--LPSSP---------------GVPKKTTANTL--------TTPYND------------------LEAVKALFAE--- 195 (427)
T ss_dssp HT--CCSCS---------------SSCHHHHTTEE--------EEETTC------------------HHHHHHHHHH---
T ss_pred cC--CCCCC---------------CCCCcccCcee--------ecCCCC------------------HHHHHHHHHh---
Confidence 00 00100 00000000000 012343 3567777764
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCC
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lgg 693 (719)
.++++++||+||+ ++.+|.+.++++|+++|+++|++||++||+||||+|| |+|.+++.+++++.||++|+||++|+
T Consensus 196 --~~~~~~~vi~~p~-~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~~~di~t~sK~~~~ 271 (427)
T 3fq8_A 196 --NPGEIAGVILEPI-VGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIAYGGVQEKFGVTPDLTTLGKIIGG 271 (427)
T ss_dssp --STTTEEEEEECSS-BCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBTTHHHHHTTCCCSEEEECGGGGT
T ss_pred --CCCCEEEEEEcCC-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcchhhHhcCCCCChhhhhhhhhC
Confidence 3568999999998 9999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred CccchheeEeCHHHHhhhcC
Q 005009 694 GVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~~ 713 (719)
| +|+|++++++++++.+..
T Consensus 272 G-~~~G~~~~~~~~~~~~~~ 290 (427)
T 3fq8_A 272 G-LPVGAYGGKREIMQLVAP 290 (427)
T ss_dssp T-SSCEEEEECHHHHTTBTT
T ss_pred C-cceEEEEEcHHHHHhhcc
Confidence 9 699999999999998864
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-38 Score=356.02 Aligned_cols=272 Identities=17% Similarity=0.166 Sum_probs=190.5
Q ss_pred EEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCC----CChHHHHHHHHH
Q 005009 377 TVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPEN----VYEPALECAELL 452 (719)
Q Consensus 377 ~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~----~~~~~~~Lae~L 452 (719)
.++++++| +|+||.||+ +||||++|+|+++|||+ ||+|++|+++|+....+.....+ ..+...+++++|
T Consensus 47 ~~~~~~~G--~~l~d~dG~----~ylD~~~g~~~~~lGh~-~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~l 119 (472)
T 1ohv_A 47 CNYEESRG--NYLVDVDGN----RMLDLYSQISSIPIGYS-HPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESL 119 (472)
T ss_dssp BCGGGCBB--TEEEBTTSC----EEEESSHHHHTCSSCBT-CHHHHHHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHHTG
T ss_pred ceEEEEEc--CEEEeCCCC----EEEECCCCHhhcccCCC-CHHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHH
Confidence 34555555 589999999 99999999999999999 99999999999865432211111 245666777777
Q ss_pred HhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhcc--ccc---cc----cccCCCccccCc--ceEEEEEeCCcccCcc
Q 005009 453 LQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD--HEV---LV----DFLGKDTTEKCI--ELKVLALKGSYHGDTL 521 (719)
Q Consensus 453 ~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~--~G~---~~----~~~~~~~~~~~~--r~kII~~~~syHG~t~ 521 (719)
++..+.+ .++|+|+|||+||||+|||+| ++|+.. +|. +. ....+ ..++ |.+||+++++|||+|.
T Consensus 120 ~~~~~~~-~~~v~f~~sGseA~~~Aik~a-~~~~~~~~~~~~~~t~~~~~~~~~~---~~~g~~r~~ii~~~~~yHg~~~ 194 (472)
T 1ohv_A 120 LSVAPKG-MSQLITMACGSCSNENAFKTI-FMWYRSKERGQSAFSKEELETCMIN---QAPGCPDYSILSFMGAFHGRTM 194 (472)
T ss_dssp GGGCCTT-CCEEEEESSHHHHHHHHHHHH-HHHHHHHHHTTCCCCHHHHHHHHTT---CTTTSCCCEEEEETTCCCCSSH
T ss_pred HHhCCCC-cCEEEEeCCchhHHHHHHHHH-HHHhhhhccCccccccccccccccc---ccccCCCCeEEEECCCcccccH
Confidence 7776544 689999999999999999999 555320 110 00 00000 0022 5799999999999999
Q ss_pred ccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHH
Q 005009 522 GAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYS 601 (719)
Q Consensus 522 galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~ 601 (719)
+++++++...++.. + + |.. +..++++|. ++.+.. ...++| +.+.....
T Consensus 195 ~~~~~~g~~~~~~~-------~----~--~~~----~~~~~~~p~-~~~~~~--~~~~~~------------~~~~~~d~ 242 (472)
T 1ohv_A 195 GCLATTHSKAIHKI-------D----I--PSF----DWPIAPFPR-LKYPLE--EFVKEN------------QQEEARCL 242 (472)
T ss_dssp HHHHHCCSCHHHHT-------T----S--CCC----CCCEECCCC-CCSSGG--GCHHHH------------HHHHHHHH
T ss_pred HHHhcCCCcccccc-------C----C--CCC----CCcccCCCc-ccCccc--cccccc------------hhHHHHHH
Confidence 99999975432211 0 0 000 111233331 110000 000011 11122345
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCC
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV 681 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~ 681 (719)
+.|++.|.+.. ....++++||+||+ ++++|+++++++|+++|+++|++||++||+|||||||||+|.+|+++++|+.
T Consensus 243 ~~l~~~l~~~~--~~~~~~~~vive~v-~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~ 319 (472)
T 1ohv_A 243 EEVEDLIVKYR--KKKKTVAGIIVEPI-QSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLD 319 (472)
T ss_dssp HHHHHHHHHHH--HTTCCEEEEEECSS-BCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCS
T ss_pred HHHHHHHHhcC--CCCCCEEEEEEcCC-cCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCchhccccCCC
Confidence 77888886310 00127999999998 9999999999999999999999999999999999999999999999999997
Q ss_pred --cceeeehhc-cCCCc
Q 005009 682 --PDIACYGKL-LTGGV 695 (719)
Q Consensus 682 --PDIvtlgK~-LggG~ 695 (719)
||++||||+ |||||
T Consensus 320 ~~~Di~t~sK~~l~GG~ 336 (472)
T 1ohv_A 320 DPADVMTFSKKMMTGGF 336 (472)
T ss_dssp SCCSEEEECGGGSSEEE
T ss_pred CCCCEEEEccccccCCc
Confidence 999999999 89995
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-37 Score=339.90 Aligned_cols=266 Identities=24% Similarity=0.326 Sum_probs=213.1
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. |+||.+|+ +|||+.++++++++||+ ||+|++|+.+|++++.+.++..+.++...+|+++|++
T Consensus 25 ~~~~~~~~~G~--~v~d~~g~----~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~ 97 (439)
T 3dxv_A 25 FPLAISGGRGA--RLIEENGR----ELIDLSGAWGAASLGYG-HPAIVAAVSAAAANPAGATILSASNAPAVTLAERLLA 97 (439)
T ss_dssp SCCEEEEEEBT--EEEETTSC----EEEESSTTTTTCTTCBS-CHHHHHHHHHHHHSCSCSCSSSSEEHHHHHHHHHHHH
T ss_pred CCceEEEeeeC--EEEeCCCC----EEEECCCchhhccCCCC-CHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHH
Confidence 46788888776 79999999 99999999999999999 9999999999999886654445678899999999999
Q ss_pred ccCCCCC-CeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCC--
Q 005009 455 GVGKGWA-SRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP-- 531 (719)
Q Consensus 455 ~~~~~~~-~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~-- 531 (719)
..+.+ . ++++|++||+||++.|++++ +.+++ +.+||.++++|||.+.+++++++...
T Consensus 98 ~~~~~-~~~~v~~~~ggsea~~~al~~~-~~~~~------------------~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 157 (439)
T 3dxv_A 98 SFPGE-GTHKIWFGHSGSDANEAAYRAI-VKATG------------------RSGVIAFAGAYHGCTVGSMAFSGHSVQA 157 (439)
T ss_dssp TTTCT-TTEEEEEESSHHHHHHHHHHHH-HHHHS------------------CCEEEEETTCCCCSSHHHHCC-------
T ss_pred hCCCC-CCCEEEEeCCHHHHHHHHHHHH-HHHhC------------------CCEEEEECCCCCCCcHHHHhhcCCCchh
Confidence 88644 5 69999999999999999999 55543 34899999999999999999887543
Q ss_pred CCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcC
Q 005009 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611 (719)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~ 611 (719)
++.. +.+ ...+...+++|+++. +. .. ....+.|++.+.+
T Consensus 158 ~~~~--------~~~--------~~~~~~~~~~~~~~~------------~~--------~~----~~d~~~le~~l~~- 196 (439)
T 3dxv_A 158 DAAK--------ADG--------LILLPYPDPYRPYRN------------DP--------TG----DAILTLLTEKLAA- 196 (439)
T ss_dssp --------------C--------EEEECCCCSSSCBTT------------BT--------TS----HHHHHHHHHHHHT-
T ss_pred hccc--------cCC--------CCCCcEEcCCCcccc------------cc--------cH----HHHHHHHHHHHHh-
Confidence 3331 000 011223334332221 00 00 1135778888842
Q ss_pred CCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhcc
Q 005009 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLL 691 (719)
Q Consensus 612 ~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~L 691 (719)
.+.+++++||+||+ ++.+|.+.++++|+++|+++|++||++||+||||+||||+|++++++++++.||++|+||++
T Consensus 197 ---~~~~~~~~vi~~p~-~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~~~~di~s~sK~~ 272 (439)
T 3dxv_A 197 ---VPAGSIGAAFIEPI-QSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGFVPDILVLGKGL 272 (439)
T ss_dssp ---SCTTCEEEEEECSS-BSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGGGGTTCCCSEEEECGGG
T ss_pred ---cCCCCEEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhcCCCCCEEEEcchh
Confidence 34578999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccchheeEeCHHHHhhhcC
Q 005009 692 TGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 692 ggG~~Plsavl~~~~i~~~~~~ 713 (719)
++|+ |+|++++++++++.+..
T Consensus 273 ~~G~-riG~~~~~~~~~~~~~~ 293 (439)
T 3dxv_A 273 GGGL-PLSAVIAPAEILDCASA 293 (439)
T ss_dssp GTTS-CCEEEEEEHHHHTSCSS
T ss_pred cCCc-ceEEEEECHHHHhhhcC
Confidence 9995 99999999999988764
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=336.76 Aligned_cols=257 Identities=21% Similarity=0.255 Sum_probs=204.3
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. |+||.||+ +|||+.+++|++++||+ ||+|++|+.+|+++..+ ..+.++...+++++|++
T Consensus 38 ~p~~~~~~~G~--~~~d~~g~----~~lD~~~~~~~~~lG~~-~~~v~~a~~~~~~~~~~---~~~~~~~~~~l~~~la~ 107 (434)
T 2epj_A 38 YPFYVKRGEGA--YLYTVDGA----RIVDLVLAYGPLILGHK-HPRVLEAVEEALARGWL---YGAPGEAEVLLAEKILG 107 (434)
T ss_dssp SCCCEEEEEBT--EEEETTCC----EEEESSGGGTTCTTCBT-CHHHHHHHHHHHHTCSC---CSSCCHHHHHHHHHHHH
T ss_pred CCeeEEeeecC--EEEECCCC----EEEEcccchhcccCCCC-CHHHHHHHHHHHHhCCC---CCCCCHHHHHHHHHHHH
Confidence 37788888776 79999999 99999999999999999 99999999999988432 23568889999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
..+ + .++++|++||+||++.|+++| |.++++ .+||+++++|||.+.+++++++......
T Consensus 108 ~~~-~-~~~v~~~~sgseA~~~al~~a-r~~~~~------------------~~vi~~~~~yhg~~~~~~~~~~~~~~~~ 166 (434)
T 2epj_A 108 YVK-R-GGMIRFVNSGTEATMTAIRLA-RGYTGR------------------DLILKFDGCYHGSHDAVLVAAGSAAAHY 166 (434)
T ss_dssp HHC-T-TCEEEEESSHHHHHHHHHHHH-HHHHCC------------------CEEEEEETCCCCSSGGGSEECC------
T ss_pred hCC-C-CCEEEEeCCHHHHHHHHHHHH-HHhhCC------------------CeEEEEcCCcCCCCHHHHHhcCCCcccc
Confidence 885 2 589999999999999999999 666543 4899999999999999888775321110
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
. .|+..+ .+.. .... .++ ++++| .+.+++.+++
T Consensus 167 ~--~p~~~g------~~~~-~~~~--~~~--------------~~~~d------------------~~~le~~l~~---- 199 (434)
T 2epj_A 167 G--VPTSAG------VPEA-VARL--TLV--------------TPYND------------------VEALERVFAE---- 199 (434)
T ss_dssp C--EESSTT------CCHH-HHTT--EEE--------------EETTC------------------HHHHHHHHHH----
T ss_pred C--CCCCCC------CCCc-ccCc--eEe--------------cCCCC------------------HHHHHHHHHh----
Confidence 0 001000 0000 0000 011 11333 2567777763
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
.++++++||+||+ ++.+|++.++++|+++|+++|++||++||+||||+|| |+|++++++++|+.||++|+||++|+|
T Consensus 200 -~~~~~~~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~~di~s~sK~l~~G 276 (434)
T 2epj_A 200 -YGDRIAGVIVEPV-IANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGLEGAQGYFNIEGDIIVLGKIIGGG 276 (434)
T ss_dssp -HGGGEEEEEECSS-BCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTT-TSSTTHHHHHHTCCCSEEEEEGGGGTT
T ss_pred -CCCCEEEEEEeCC-cCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhce-eCCcchhhHHhCCCCCeeeecchhcCC
Confidence 2357999999998 9999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred ccchheeEeCHHHHhhhcC
Q 005009 695 VIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~~ 713 (719)
+|+|++++++++++.+..
T Consensus 277 -~~~G~v~~~~~~~~~l~~ 294 (434)
T 2epj_A 277 -FPVGAVAGSREVMSLLTP 294 (434)
T ss_dssp -SSCEEEEECHHHHTTBTT
T ss_pred -cceeeeeecHHHHHhhcc
Confidence 799999999999998764
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-37 Score=341.36 Aligned_cols=267 Identities=18% Similarity=0.186 Sum_probs=206.1
Q ss_pred cCCceEEEe-CCCCcccceeeeccccccccCCCCCCCHHHH-H-HHHH---hhhhcccccCCCCCChHHHHHHHHHHhcc
Q 005009 383 CGENFSVYQ-DQKNKFIGQQFDACASWWTQGPDATLQIELA-R-DMGY---TAARFGHVMFPENVYEPALECAELLLQGV 456 (719)
Q Consensus 383 ~G~g~~l~D-~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~-~-Av~~---q~~~~~~~~~~~~~~~~~~~Lae~L~~~~ 456 (719)
+|.|+|+|| .||+ +|||+++++|++++||+ ||+|+ + |+++ |++++.+.. +.+.++...+++++|+++.
T Consensus 41 ~~~g~~~~d~~~g~----~ylD~~~~~~~~~lG~~-~p~v~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~la~~la~~~ 114 (449)
T 2cjg_A 41 RSGGSYLVDAITGR----RYLDMFTFVASSALGMN-PPALVDDREFHAELMQAALNKPSN-SDVYSVAMARFVETFARVL 114 (449)
T ss_dssp TCBBTEEEBTTTCC----EEEESSHHHHTCSSCBS-CHHHHTCHHHHHHHHHHHTCCCCT-TTCCCHHHHHHHHHHHHHH
T ss_pred eeeeCEEEECCCCc----EEEEccCCccccCCCCC-CHHHHHHHHHHHHHHHHHhcCCCC-cccCCHHHHHHHHHHHHhc
Confidence 455668999 9999 99999999999999999 99999 9 9999 998876544 3467888999999999988
Q ss_pred CCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCC-CCCCCC
Q 005009 457 GKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAP-SPYTGF 535 (719)
Q Consensus 457 ~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~-~~~~~~ 535 (719)
+....++|+|++||+|||+.|+|+| |.+++.+|.. . ..+.+++.+||+++++|||.+.+++++++. +.++..
T Consensus 115 ~~~~~~~v~~~~~gseA~~~aik~a-~~~~~~~~~~-~-----~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~ 187 (449)
T 2cjg_A 115 GDPALPHLFFVEGGALAVENALKAA-FDWKSRHNQA-H-----GIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITAR 187 (449)
T ss_dssp CCTTCCEEEEESSHHHHHHHHHHHH-HHHHHHHHHH-T-----TSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTT
T ss_pred CCCCCCEEEEeCchHHHHHHHHHHH-HHHhcccccc-c-----ccccCCCCEEEEECCCcCCcccchhhhcCCchhhccc
Confidence 5212579999999999999999999 6776521000 0 000123568999999999999999999874 222211
Q ss_pred CCCCCccCCCcccCCCcccccCcceeecCcc--hhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPE--WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~--~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
+.++ . .+...+++++ ...+ .+ ......+.+.|++.+.+
T Consensus 188 --------~~~~-~-------~~~~~~~~~d~~~~~~---------------~~------~~~~~~~~~~le~~i~~--- 227 (449)
T 2cjg_A 188 --------FPKF-D-------WPRIDAPYMRPGLDEP---------------AM------AALEAEALRQARAAFET--- 227 (449)
T ss_dssp --------SCCC-C-------CCEECCCCCCTTCCHH---------------HH------HHHHHHHHHHHHHHHHH---
T ss_pred --------CCCC-C-------CCcEEEcCCCchhhcc---------------cc------chhhHHHHHHHHHHHHh---
Confidence 1110 0 1222333322 1100 00 01122345678888863
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCC
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lgg 693 (719)
..+++++||+||+ |+++|+++++++|+++|+++|++||++||+||||+||||+|++|+++++++.||++|+||++
T Consensus 228 --~~~~~~~vi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l-- 302 (449)
T 2cjg_A 228 --RPHDIACFVAEPI-QGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFGKKT-- 302 (449)
T ss_dssp --STTTEEEEEECSE-ETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGG--
T ss_pred --cCCceEEEEEeCc-CCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCcceeecccCCCceEEEecCcc--
Confidence 2357999999998 99999999999999999999999999999999999999999999999999999999999998
Q ss_pred CccchheeEeCHHHHhh
Q 005009 694 GVIPLAATLATNAVFDS 710 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~ 710 (719)
|+|++++++++++.
T Consensus 303 ---~iG~~~~~~~~~~~ 316 (449)
T 2cjg_A 303 ---QVCGVMAGRRVDEV 316 (449)
T ss_dssp ---SSEEEEECGGGGGS
T ss_pred ---cEEEEEECHHHhhh
Confidence 89999999999886
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=337.02 Aligned_cols=270 Identities=22% Similarity=0.299 Sum_probs=208.0
Q ss_pred cchhhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhc
Q 005009 353 MPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARF 432 (719)
Q Consensus 353 L~e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~ 432 (719)
+.++..+++|.+|.. .|.++++++|. |+||.||+ +|||+.+++|++++||+ ||+|++|+.+|++++
T Consensus 24 ~~~~~~~~~~~~~~~-------~~~~~~~~~g~--~~~d~~g~----~~lD~~~~~~~~~lG~~-~p~v~~ai~~~~~~~ 89 (420)
T 2pb2_A 24 TRATFDEVILPVYAP-------ADFIPVKGKGS--RVWDQQGK----EYIDFAGGIAVTALGHC-HPALVEALKSQGETL 89 (420)
T ss_dssp ----------------------CCSCEEEEEBT--EEEETTCC----EEEESSHHHHTCTTCBT-CHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhccccC-------CCceEEeeecC--EEEECCCC----EEEEccccccccccCCC-CHHHHHHHHHHHHhc
Confidence 334455556655432 46678887776 79999999 99999999999999999 999999999999987
Q ss_pred ccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEE
Q 005009 433 GHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLAL 512 (719)
Q Consensus 433 ~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~ 512 (719)
.+.. ..+.++...+|+++|++..+ .++++|++||+||++.|+|++ +.+...+|. +++.+||++
T Consensus 90 ~~~~-~~~~~~~~~~l~~~la~~~g---~~~v~~~~ggteA~~~al~~~-~~~~~~~~~------------~g~~~vi~~ 152 (420)
T 2pb2_A 90 WHTS-NVFTNEPALRLGRKLIDATF---AERVLFMNSGTEANETAFKLA-RHYACVRHS------------PFKTKIIAF 152 (420)
T ss_dssp CCCC-TTSCCHHHHHHHHHHHHHSS---CSEEEEESSHHHHHHHHHHHH-HHHHHHHTC------------TTCCEEEEE
T ss_pred cccc-CccCCHHHHHHHHHHHhhCC---CCeEEEeCCHHHHHHHHHHHH-HHHhhhccC------------CCCCEEEEE
Confidence 6643 23567889999999999886 479999999999999999999 555333222 345689999
Q ss_pred eCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccC
Q 005009 513 KGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERD 592 (719)
Q Consensus 513 ~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d 592 (719)
+.+|||.+..++++++...++.. +.+.. .+...++ ++|
T Consensus 153 ~~~yh~~~~~~~~~~g~~~~~~~--------~~p~~--------~~~~~~~----------------~~d---------- 190 (420)
T 2pb2_A 153 HNAFHGRSLFTVSVGGQPKYSDG--------FGPKP--------ADIIHVP----------------FND---------- 190 (420)
T ss_dssp TTCCCCSSHHHHHHSSCHHHHTT--------SSSCC--------SCEEEEC----------------TTC----------
T ss_pred eCCcCCcCHHHHHhcCCcccccc--------CCCCC--------CCeEEec----------------CCC----------
Confidence 99999999998888764322211 11100 1111111 222
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc
Q 005009 593 SSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE 672 (719)
Q Consensus 593 ~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~ 672 (719)
.+.|++.+. +++++||+||+ ++.||+++++.+++++|+++|++||++||+||||+||||+|++
T Consensus 191 --------~~~le~~i~--------~~~~~vi~~p~-~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~ 253 (420)
T 2pb2_A 191 --------LHAVKAVMD--------DHTCAVVVEPI-QGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDL 253 (420)
T ss_dssp --------HHHHHHHCC--------TTEEEEEECSE-ETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS
T ss_pred --------HHHHHHHhc--------cCceEEEEeCC-cCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcH
Confidence 255666664 36899999998 9999999999999999999999999999999999999999999
Q ss_pred ccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 673 TTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 673 ~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
++++++++.||++|++|++|+| +|+|++++++++++.+..
T Consensus 254 ~~~~~~~~~~diit~sK~l~~G-~~iG~~~~~~~l~~~l~~ 293 (420)
T 2pb2_A 254 FAYMHYGVTPDILTSAKALGGG-FPVSAMLTTQEIASAFHV 293 (420)
T ss_dssp SHHHHHTCCCSEEEECGGGGTT-SCCEEEEECHHHHTTCC-
T ss_pred HHHHhcCCCCCeEEecccccCC-CceEEEEEhHHHHHhhcC
Confidence 9999999999999999999999 699999999999888754
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-36 Score=328.58 Aligned_cols=254 Identities=23% Similarity=0.315 Sum_probs=209.2
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. ++||.||+ +||||.++++++++||+ ||+|++|++++++++.+.. ..+.++...+++++|++
T Consensus 18 ~~~~~~~~~G~--~~~d~~g~----~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~ 89 (395)
T 3nx3_A 18 FDIVLEKGQGV--YLFDDKAK----KYLDFSSGIGVCALGYN-HAKFNAKIKAQVDKLLHTS-NLYYNENIAAAAKNLAK 89 (395)
T ss_dssp CSCBEEEEEBT--EEEETTCC----EEEESSHHHHTCTTCBS-CHHHHHHHHHHHTTCSCCC-TTSBCHHHHHHHHHHHH
T ss_pred CCceEEeeeee--EEEECCCC----EEEECCCcHHhccCCCC-CHHHHHHHHHHHHhccccc-cccCCHHHHHHHHHHHH
Confidence 46678887776 79999999 99999999999999999 9999999999999877654 34568899999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
..+ .++++|++||+||++.|++++ +.++.++| .++.+||+++.+|||.+..++++++...++.
T Consensus 90 ~~~---~~~v~~~~gg~ea~~~al~~~-~~~~~~~g-------------~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~ 152 (395)
T 3nx3_A 90 ASA---LERVFFTNSGTESIEGAMKTA-RKYAFNKG-------------VKGGQFIAFKHSFHGRTLGALSLTANEKYQK 152 (395)
T ss_dssp HHT---CSEEEEESSHHHHHHHHHHHH-HHHHHHTT-------------CTTCEEEEETTCCCCSSHHHHTTCCCHHHHG
T ss_pred hcC---CCeEEEeCCHHHHHHHHHHHH-HHHhhccC-------------CCCCEEEEEcCCcCCCCHHHHhhcCCccccc
Confidence 887 479999999999999999999 55543322 2356899999999999999999887543332
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
. +.+. ..+...++ ++| .+.+++.+.
T Consensus 153 ~------------~~~~----~~~~~~~~----------------~~d------------------~~~l~~~l~----- 177 (395)
T 3nx3_A 153 P------------FKPL----ISGVKFAK----------------YND------------------ISSVEKLVN----- 177 (395)
T ss_dssp G------------GCSC----CSCEEEEC----------------TTC------------------HHHHHTTCC-----
T ss_pred c------------cCCC----CCCcEEeC----------------CCC------------------HHHHHHhcc-----
Confidence 1 0000 00111111 233 245555442
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
+++++|++||+ ++++|.+.++++|+++|+++|++||++||+||||+||||+|.+++++++++.||++|+||++++|
T Consensus 178 ---~~~~~v~~~~~-~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d~~t~sK~~~~G 253 (395)
T 3nx3_A 178 ---EKTCAIILESV-QGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILPDIMTSAKALGCG 253 (395)
T ss_dssp ---TTEEEEEEESE-ECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGTTT
T ss_pred ---CCeEEEEEeCc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCCCCCEEEecccccCC
Confidence 47899999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchheeEeCHHH-HhhhcC
Q 005009 695 VIPLAATLATNAV-FDSFVG 713 (719)
Q Consensus 695 ~~Plsavl~~~~i-~~~~~~ 713 (719)
+|+|++++++++ ++.+..
T Consensus 254 -~~~G~~~~~~~~~~~~~~~ 272 (395)
T 3nx3_A 254 -LSVGAFVINQKVASNSLEA 272 (395)
T ss_dssp -SCCEEEEECHHHHHHHSCT
T ss_pred -CceEEEEEchhhhhhhcCC
Confidence 699999999999 877754
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-36 Score=330.42 Aligned_cols=270 Identities=23% Similarity=0.292 Sum_probs=215.8
Q ss_pred eEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhc
Q 005009 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG 455 (719)
Q Consensus 376 p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~ 455 (719)
|.++.+++|. ++||.+|+ +|||+.++.|+.++||+ ||+|++|+.++++++.+.. ..+.++...+|+++|++.
T Consensus 26 ~~~~~~~~g~--~~~d~~g~----~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~~ 97 (433)
T 1zod_A 26 PMIIERAKGS--FVYDADGR----AILDFTSGQMSAVLGHC-HPEIVSVIGEYAGKLDHLF-SEMLSRPVVDLATRLANI 97 (433)
T ss_dssp SSCCCEEEBT--EEECTTCC----EEEETTHHHHTCTTCBT-CHHHHHHHHHHHHHCCCCC-TTCCCHHHHHHHHHHHHH
T ss_pred CceEEEeecC--EEEeCCCC----EEEEcccchhccccCCC-CHHHHHHHHHHHHhCcccc-cccCCHHHHHHHHHHHHh
Confidence 5567776665 89999999 99999999999999999 9999999999998876533 456688899999999998
Q ss_pred cCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCC
Q 005009 456 VGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535 (719)
Q Consensus 456 ~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~ 535 (719)
.|.+ .++|+|++||+||++.|++++ +.+++ +.+||+++.+|||.+.+++++++... ...
T Consensus 98 ~~~~-~~~v~~~~gg~ea~~~a~~~~-~~~~~------------------~~~vi~~~~~yhg~~~~~~~~~~~~~-~~~ 156 (433)
T 1zod_A 98 TPPG-LDRALLLSTGAESNEAAIRMA-KLVTG------------------KYEIVGFAQSWHGMTGAAASATYSAG-RKG 156 (433)
T ss_dssp SCTT-CCEEEEESCHHHHHHHHHHHH-HHHHT------------------CCEEEEETTCCCCSSHHHHHTCCSSC-CSS
T ss_pred CCCC-cCEEEEeCchHHHHHHHHHHH-HHhhC------------------CCeEEEECCCcCCCChhHHhhcCCcc-ccc
Confidence 8743 579999999999999999998 55543 24899999999999999998886432 111
Q ss_pred CCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCC
Q 005009 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLK 615 (719)
Q Consensus 536 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~ 615 (719)
+.+. ..+...++.|..++.+ |++. .+++.....+.+++.+.+ .
T Consensus 157 --------~~~~--------~~~~~~v~~~~~~~~~--------~~~~---------~~~~~~~d~~~le~~l~~----~ 199 (433)
T 1zod_A 157 --------VGPA--------AVGSFAIPAPFTYRPR--------FERN---------GAYDYLAELDYAFDLIDR----Q 199 (433)
T ss_dssp --------SCCC--------CTTEEEECCCCTTSCC--------CEET---------TEECHHHHHHHHHHHHHH----H
T ss_pred --------cCCC--------CCCceEecCCcccccc--------cCCc---------hhhhHHHHHHHHHHHHHh----c
Confidence 1100 1234455666544321 2220 011112235678888863 1
Q ss_pred CCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCCc
Q 005009 616 VSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV 695 (719)
Q Consensus 616 ~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG~ 695 (719)
+++++++||+||+ ++.+|+++++++|+++|+++|++||++||+||||+||||+|.+++++++++.||++|+||++|+|
T Consensus 200 ~~~~~~~vi~~p~-~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~~~~~~~~~~~di~s~sK~~~~G- 277 (433)
T 1zod_A 200 SSGNLAAFIAEPI-LSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAG- 277 (433)
T ss_dssp CCSCEEEEEECSE-ETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECHHHHTT-
T ss_pred CCCCeEEEEEccc-cCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchHhHHhhcCCCCCEEEecccccCC-
Confidence 2357999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchheeEeCHHHHhhhcC
Q 005009 696 IPLAATLATNAVFDSFVG 713 (719)
Q Consensus 696 ~Plsavl~~~~i~~~~~~ 713 (719)
+|+|++++++++++.+..
T Consensus 278 ~~ig~~~~~~~~~~~~~~ 295 (433)
T 1zod_A 278 LPLAAIVTSAAIEERAHE 295 (433)
T ss_dssp SSCEEEEECHHHHHHHHH
T ss_pred CCeeEEEEhHHHHHhhcc
Confidence 799999999999987754
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-35 Score=325.27 Aligned_cols=256 Identities=23% Similarity=0.303 Sum_probs=204.6
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. ++||.||+ +||||.+++|++++||+ ||+|++|+++|+++..+ .++.++...+|+++|++
T Consensus 34 ~p~~~~~~~g~--~~~d~~g~----~~iD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~---~~~~~~~~~~l~~~l~~ 103 (424)
T 2e7u_A 34 TPPFLVRGEGA--YVWDADGN----RYLDYVMSWGPLILGHA-HPKVLARVRETLERGLT---FGAPSPLEVALAKKVKR 103 (424)
T ss_dssp CCCCEEEEEBT--EEEETTCC----EEEESSGGGTTCTTCBT-CHHHHHHHHHHHHTCSC---CSSCCHHHHHHHHHHHH
T ss_pred CCeeEEeeecC--EEEeCCCC----EEEEccccccccccCCC-CHHHHHHHHHHHHhCCC---CCCCCHHHHHHHHHHHH
Confidence 47788888776 79999999 99999999999999999 99999999999987432 13568889999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
+.| + .++++|++||+||++.|+|+| |.++++ .+||.++++|||.+.+++++++......
T Consensus 104 ~~~-~-~~~v~~~~~g~ea~~~al~~a-r~~~~~------------------~~vi~~~~~yhg~~~~~~~~~~~~~~~~ 162 (424)
T 2e7u_A 104 AYP-F-VDLVRFVNSGTEATMSALRLA-RGYTGR------------------PYIVKFRGNYHGHADGLLVEAGSGALTL 162 (424)
T ss_dssp HCT-T-CCEEEEESSHHHHHHHHHHHH-HHHHCC------------------CEEEEETTCCCCCCGGGSEECCSSSCCB
T ss_pred hCC-C-CCEEEEeCCHHHHHHHHHHHH-HHhhCC------------------CEEEEECCCcCCCcHHHHHhcCCccccc
Confidence 886 3 589999999999999999999 677543 4899999999999998887765321110
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
..|+..+ .+.. .... .++ ++++| .+.+++.+++
T Consensus 163 --~~p~~~g------~~~~-~~~~--~~~--------------~~~~d------------------~~~le~~l~~---- 195 (424)
T 2e7u_A 163 --GVPSSAG------VPEE-YAKL--TLV--------------LEYND------------------PEGLREVLKR---- 195 (424)
T ss_dssp --CEESSTT------CCHH-HHTT--EEE--------------ECTTC------------------HHHHHHHHHH----
T ss_pred --CCCCCCC------CCCc-cCCc--eEe--------------CCCCC------------------HHHHHHHHHh----
Confidence 0011000 0000 0000 011 11333 2557777753
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
.++++++||+||+ ++++|+++++++|+++|+++ ++||++||+||||+|| |+|.+++++++|+.||++|+||++|+|
T Consensus 196 -~~~~~~~vi~ep~-~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~~di~s~sK~l~~G 271 (424)
T 2e7u_A 196 -RGEEIAAIIFEPV-VGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGF-RLAFGGATELLGLKPDLVTLGKILGGG 271 (424)
T ss_dssp -HGGGEEEEEECSS-BCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTT-TSSTTHHHHHHTCCCSEEEECGGGGTT
T ss_pred -CCCCEEEEEEeCC-CCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcccc-ccchhHHHHHhCCCcchhhhhhhhhCC
Confidence 2357999999998 99999999999999999999 9999999999999999 999999999999999999999999999
Q ss_pred ccchheeEeCHHHHhhhcC
Q 005009 695 VIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~~ 713 (719)
+|+|++++++++++.+..
T Consensus 272 -~~~G~~~~~~~~~~~~~~ 289 (424)
T 2e7u_A 272 -LPAAAYAGRREIMEKVAP 289 (424)
T ss_dssp -SSCEEEEECHHHHTTBTT
T ss_pred -cceEEEEEcHHHHhhhcc
Confidence 799999999999998864
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=330.39 Aligned_cols=254 Identities=20% Similarity=0.202 Sum_probs=190.6
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|+++++++|. ++||.||+ +|||+.+++|++++||+ ||+|++|+.+|+++..+. ++.++...+++++|++
T Consensus 39 ~p~~~~~~~G~--~~~d~~g~----~~iD~~~~~~~~~lg~~-~~~v~~a~~~~~~~~~~~---~~~~~~~~~la~~l~~ 108 (453)
T 2cy8_A 39 HGLFISDAQGV--HKTDVDGN----VYLDFFGGHGALVLGHG-HPRVNAAIAEALSHGVQY---AASHPLEVRWAERIVA 108 (453)
T ss_dssp CCCCEEEEEBT--EEEETTCC----EEEESCTTTTSCTTCBT-CHHHHHHHHHHHTTTCSS---CSSCHHHHHHHHHHHH
T ss_pred CCceEEEeecC--EEEECCCC----EEEECcccHhhcccCCC-CHHHHHHHHHHHHhCCCC---CCCCHHHHHHHHHHHh
Confidence 47778887776 79999999 99999999999999999 999999999999874321 4578889999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
..+ + .++++|++||+||++.|+++| |.++++ .+||.++++|||.+.+++++++. .+..
T Consensus 109 ~~~-~-~~~v~~~~gg~eA~~~al~~a-r~~~~~------------------~~vi~~~~~yhg~~~~~~~~~~~-~~~~ 166 (453)
T 2cy8_A 109 AFP-S-IRKLRFTGSGTETTLLALRVA-RAFTGR------------------RMILRFEGHYHGWHDFSASGYNS-HFDG 166 (453)
T ss_dssp HCT-T-CSEEEEESCHHHHHHHHHHHH-HHHHCC------------------CEEEEECC--------------------
T ss_pred hCC-C-CCEEEEeCCHHHHHHHHHHHH-HHhhCC------------------CEEEEEcCCcCCCchhhHhhcCC-ccCC
Confidence 876 3 589999999999999999999 666543 48999999999999988776643 1100
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
++..+ .|.. ..... .. ++++| .+.+++.+++
T Consensus 167 ----~~~~g------~~~~-~~~~~--~~--------------~~~~d------------------~~~le~~l~~---- 197 (453)
T 2cy8_A 167 ----QPAPG------VLPE-TTANT--LL--------------IRPDD------------------IEGMREVFAN---- 197 (453)
T ss_dssp --------------------CGGGE--EE--------------ECTTC------------------HHHHHHHHHH----
T ss_pred ----CcCCC------CCcc-ccCce--ee--------------cCCCC------------------HHHHHHHHHh----
Confidence 00000 0000 00000 01 11233 2567777763
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
.++++++||+||+ ++.+|+++++++|+++|+++|++||++||+||||+|| |+|.+++++++++.||++++||++++|
T Consensus 198 -~~~~~~~vi~ep~-~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~~di~s~sK~l~~G 274 (453)
T 2cy8_A 198 -HGSDIAAFIAEPV-GSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNHGMQALLDVQPDLTCLAKASAGG 274 (453)
T ss_dssp -HGGGEEEEEECSS-EHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTT-TTCTTHHHHHHTCCCSEEEEEGGGGTT
T ss_pred -cCCCEEEEEECCC-CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccc-ccCchhhhHHhCCCCcEEEEChhhhCC
Confidence 2357999999998 9999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred ccchheeEeCHHHHhhhcC
Q 005009 695 VIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~~ 713 (719)
+|+|++++++++++.+..
T Consensus 275 -~~~G~v~~~~~~~~~l~~ 292 (453)
T 2cy8_A 275 -LPGGILGGREDVMGVLSR 292 (453)
T ss_dssp -SSCEEEEECHHHHTTSSS
T ss_pred -cceEEEechHHHHHHhcc
Confidence 799999999999998764
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-35 Score=321.71 Aligned_cols=288 Identities=28% Similarity=0.423 Sum_probs=219.3
Q ss_pred CCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccC
Q 005009 358 GELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF 437 (719)
Q Consensus 358 ~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~ 437 (719)
.+++|+|++.... ..++.++.+++|. ++||.+|+ +|||+.++.|++++||+ ||+|++|+.+++++..+..+
T Consensus 10 ~~~~~~~~~~~~~--~~~~~~~~~~~g~--~~~d~~g~----~ylD~~~~~~~~~lg~~-~p~v~~a~~~~~~~~~~~~~ 80 (429)
T 1s0a_A 10 QRHILHPFTSMTS--PLPVYPVVSAEGC--ELILSDGR----RLVDGMSSWWAAIHGYN-HPQLNAAMKSQIDAMSHVMF 80 (429)
T ss_dssp HHHBCCTTCCSSS--CCCCEEEEEEEBT--EEEETTSC----EEEESSTTTTTCTTCBS-CHHHHHHHHHHHHHCSCCCC
T ss_pred HHhhccccccccc--cCCceeEEeeeee--EEEeCCCC----EEEEcCccHhhccCCCC-CHHHHHHHHHHHHhcccccc
Confidence 3467999877542 1223347787775 79999999 99999999999999999 99999999999988654332
Q ss_pred CCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcc
Q 005009 438 PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYH 517 (719)
Q Consensus 438 ~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syH 517 (719)
..+.++...+++++|+++.+.+ .++++|++||+||++.|++++ +.+++.+|. .+.+||+++.+||
T Consensus 81 ~~~~~~~~~~l~~~la~~~~~~-~~~v~~~~ggtea~~~ai~~~-~~~~~~~g~-------------~~~~vi~~~~~yh 145 (429)
T 1s0a_A 81 GGITHAPAIELCRKLVAMTPQP-LECVFLADSGSVAVEVAMKMA-LQYWQAKGE-------------ARQRFLTFRNGYH 145 (429)
T ss_dssp SSEECHHHHHHHHHHHHHSCTT-CCEEEEESSHHHHHHHHHHHH-HHHHHHHTC-------------CCCEEEEETTCCC
T ss_pred cccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCHHHHHHHHHHHH-HHHhcccCC-------------CCCeEEEECCCCC
Confidence 3456778899999999988643 579999999999999999998 666542221 1458999999999
Q ss_pred cCccccccccCCCC-CCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhH
Q 005009 518 GDTLGAMEAQAPSP-YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDL 596 (719)
Q Consensus 518 G~t~galslt~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~ 596 (719)
|.+.+++++++... ++.. | .+. ..+...++.|...... +...+|
T Consensus 146 ~~~~~~~~~~~~~~~~~~~----~----~~~--------~~~~~~~~~~~~~~~~-----~~~~~d-------------- 190 (429)
T 1s0a_A 146 GDTFGAMSVCDPDNSMHSL----W----KGY--------LPENLFAPAPQSRMDG-----EWDERD-------------- 190 (429)
T ss_dssp CSSHHHHTTSCTTTTTGGG----G----TTT--------SCCCEEECCCCSBC-C-----CCCGGG--------------
T ss_pred CCchhhhhhcCCchhhccc----c----cCC--------CCCceEeCCCcccccc-----cchHHH--------------
Confidence 99998888876432 2211 1 000 0122334443211000 000011
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccccc
Q 005009 597 ASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD 676 (719)
Q Consensus 597 ~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e 676 (719)
.+.+++.+.+ .++++++|++||+.++.+|.+.++++|+++|+++|++||++||+||||+||||+|.+++++
T Consensus 191 ----~~~l~~~l~~-----~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~~~~ 261 (429)
T 1s0a_A 191 ----MVGFARLMAA-----HRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACE 261 (429)
T ss_dssp ----GHHHHHHHHH-----HTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGG
T ss_pred ----HHHHHHHHHh-----CCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHHHhh
Confidence 2556667753 2357899999994378899999999999999999999999999999999999999988999
Q ss_pred ccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 677 LLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 677 ~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
++++.||++|+||+++|||+|+|++++++++++.+..
T Consensus 262 ~~~~~~d~~t~sK~l~~G~~~iG~~~~~~~~~~~l~~ 298 (429)
T 1s0a_A 262 HAEIAPDILCLGKALTGGTMTLSATLTTREVAETISN 298 (429)
T ss_dssp GGTCCCSEEEECGGGGTSSSCCEEEEECHHHHHHHHT
T ss_pred hcCCCCCEEEecccccCCCccceEEEeCHHHHHHhhc
Confidence 9999999999999999998899999999999988765
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-33 Score=309.70 Aligned_cols=277 Identities=21% Similarity=0.267 Sum_probs=211.8
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++.+++|. ++||.+|+ +|||+.++.|++++||+.||+|++|+.+++++..+.....+.++...+++++|++
T Consensus 24 ~~~~~~~~~g~--~~~d~~g~----~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~ 97 (419)
T 2eo5_A 24 FPLVIDHGEGV--WIYDVDGN----KYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHAAANDFYNIPQLELAKKLVT 97 (419)
T ss_dssp CCCCEEEEEBT--EEEETTSC----EEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSCCCSCSCSCCHHHHHHHHHHHH
T ss_pred CCceEEeeecC--EEEECCCC----EEEEccCChhhhccCCCCCHHHHHHHHHHHhhCccccccccCCHHHHHHHHHHHH
Confidence 36677787765 79999999 9999999999999999868999999999998875533234667889999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCC-CCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS-PYT 533 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~-~~~ 533 (719)
..|.+..++++|++||+||++.|++++ +.++ +.+||+++.+|||.+.+++++++.. .++
T Consensus 98 ~~~~~~~~~v~~~~gg~ea~~~ai~~~-~~~~-------------------~~~vi~~~p~yh~~~~~~~~~~~~~~~~~ 157 (419)
T 2eo5_A 98 YSPGNFQKKVFFSNSGTEAIEASIKVV-KNTG-------------------RKYIIAFLGGFHGRTFGSISLTASKAVQR 157 (419)
T ss_dssp HSSCSSCEEEEEESSHHHHHHHHHHHH-HTTS-------------------CCEEEEETTCCCCSSHHHHHHCCSCGGGG
T ss_pred hCCCCcCCEEEEeCchHHHHHHHHHHH-HHhh-------------------CCcEEEECCCcCCCCHhhHhhcCCccccc
Confidence 887431258999999999999999998 4433 2489999999999999999888753 232
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHH-HHHhcCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYIS-QNLLQNP 612 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le-~~l~~~~ 612 (719)
.. ..+. ..+...++.++.|+.. |... .+ .++.+++. ...+.++ +.+.+.
T Consensus 158 ~~--------~~~~--------~~~~~~v~~~~~~~~~--------~g~~--~~--~~~~~~~~-~~~~~l~~~~i~~~- 207 (419)
T 2eo5_A 158 SI--------VGPF--------MPGVIHVPYPNPYRNP--------WHIN--GY--ENPSELVN-RVIEFIEDYIFVNL- 207 (419)
T ss_dssp CS--------SCCC--------CTTEEEECCCCSSSCT--------TCCC--TT--TCHHHHHH-HHHHHHHHTHHHHT-
T ss_pred cc--------cCCC--------CCCCEEECCCcccccc--------cccc--cc--ccchhhHH-HHHHHHHHHHHhhc-
Confidence 21 0000 0123344544433210 0000 00 00000111 2356777 777631
Q ss_pred CCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccC
Q 005009 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT 692 (719)
Q Consensus 613 ~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lg 692 (719)
.+++++++||+||+ ++.+|.++++++|+++|+++|++||++||+||||+||||+|.+++++++++.||++|+||++|
T Consensus 208 --~~~~~~~~vi~~p~-~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~t~sK~~~ 284 (419)
T 2eo5_A 208 --VPPEEVAGIFFEPI-QGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVITLAKALG 284 (419)
T ss_dssp --CCGGGEEEEEECSS-BTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGG
T ss_pred --cCCCCEEEEEEeCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhcCCCCCEEEeccccc
Confidence 12257899999998 999999999999999999999999999999999999999999889999999999999999999
Q ss_pred CCccchheeEeCHHHHhhh
Q 005009 693 GGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 693 gG~~Plsavl~~~~i~~~~ 711 (719)
+||+|+|+++++++++ .+
T Consensus 285 ~G~~riG~~~~~~~~~-~~ 302 (419)
T 2eo5_A 285 GGIMPIGATIFRKDLD-FK 302 (419)
T ss_dssp TTTSCCEEEEEEGGGC-CC
T ss_pred CCccceEEEEEchHhh-cC
Confidence 9988999999999987 66
|
| >3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-34 Score=294.37 Aligned_cols=196 Identities=21% Similarity=0.199 Sum_probs=163.9
Q ss_pred CCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCC-CCCChHHHHHHhcCCCccccCCCcccccc
Q 005009 35 LSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGY-PHDSDSRFLFTKLPSLSLRRNFPSSLILS 113 (719)
Q Consensus 35 ~~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 113 (719)
..|++|||+||+||||||+||++|+++|+ ++|++|.|||||++|+ +++.|+.++.+.+ ++
T Consensus 24 ~~m~~i~Itgt~t~vGKT~vt~gL~~~l~-----~~G~~V~~fKPv~~g~~~~~~D~~~~~~~~-g~------------- 84 (251)
T 3fgn_A 24 SHMTILVVTGTGTGVGKTVVCAALASAAR-----QAGIDVAVCKPVQTGTARGDDDLAEVGRLA-GV------------- 84 (251)
T ss_dssp SSCEEEEEEESSTTSCHHHHHHHHHHHHH-----HTTCCEEEEEEEECCGGGTCCHHHHHHHHH-CC-------------
T ss_pred cCCCEEEEEeCCCCCcHHHHHHHHHHHHH-----HCCCeEEEEeeeecCCCCCCHHHHHHHHHc-CC-------------
Confidence 34689999999999999999999999995 8999999999999987 3458888776553 21
Q ss_pred chhhhhhHHHhhhhccCCCCCCCCccCCcccccccccccccccCCCCCccccccccceeecccCcChHHHHhHhcCC-CC
Q 005009 114 NSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGG-VV 192 (719)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~-~~ 192 (719)
....|++.|+.|++|+.+++++ +. .+
T Consensus 85 ----------------------------------------------------~~~~~~~~~~~p~sP~~aa~~~-~~~~~ 111 (251)
T 3fgn_A 85 ----------------------------------------------------TQLAGLARYPQPMAPAAAAEHA-GMALP 111 (251)
T ss_dssp ----------------------------------------------------CEEEEEEECSSSSCHHHHHHHT-TCCCC
T ss_pred ----------------------------------------------------CCCCCCeeECCCCChHHHHHHc-CCCCC
Confidence 0125789999999999999998 77 78
Q ss_pred CHHHHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCCCC-chhHHHHhhcCCCEEEEEcCCCChHHHHHHHH
Q 005009 193 GDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSG-SLQCDLYRPFRLPGILVGDGRLGGISGTISAY 271 (719)
Q Consensus 193 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~-~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~ 271 (719)
+.++|.+.|.++.+. +|++||||+||+++|+.+. .+++|+|+.+++|||||++.++|+++++++++
T Consensus 112 ~~~~i~~~~~~l~~~-------------~D~vlIEGagGl~~pl~~~~~~~adla~~l~~pVILV~~~~~g~i~~~~lt~ 178 (251)
T 3fgn_A 112 ARDQIVRLIADLDRP-------------GRLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTADLGTLNHTKLTL 178 (251)
T ss_dssp CHHHHHHHHHTTCCT-------------TCEEEEECSSSTTCEEETTTEEHHHHHHHTTCEEEEEECSSTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc-------------CCEEEEECCCCCcCCcCcccchHHHHHHHcCCCEEEEEcCCCccHHHHHHHH
Confidence 899999988876543 9999999999999997665 89999999999999999999999999999999
Q ss_pred HHHHhCCCcEEEEEEccCC-CCC--HHHHHHhhcCCCcEEe-cCCCCC
Q 005009 272 ESLKLRGYDVVAVVFEDHG-LVN--EVPLMSYLRNRVPVLV-LPPLPQ 315 (719)
Q Consensus 272 ~~l~~~~~~v~gvi~N~~~-~~~--~~~l~~~~~~~~pvlg-lP~~~~ 315 (719)
+.++.+|++|.|||+|++. ... .....+.+++-+||+| ||+.+.
T Consensus 179 ~~l~~~g~~i~GvIlN~v~~~~~~~~~~~~~~le~~vpvLG~iP~~~~ 226 (251)
T 3fgn_A 179 EALAAQQVSCAGLVIGSWPDPPGLVAASNRSALARIAMVRAALPAGAA 226 (251)
T ss_dssp HHHHHTTCCEEEEEEEEECSSCCHHHHHHHHHHHHHSCEEEEEETTGG
T ss_pred HHHHhCCCCEEEEEEECCCCchhhhhhhHHHHHHHhCCEEEEeeCCCC
Confidence 9999999999999999983 221 1222333321199999 999864
|
| >3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-33 Score=288.85 Aligned_cols=182 Identities=24% Similarity=0.288 Sum_probs=153.1
Q ss_pred CCCCCCCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCC----CCChHHHHHHhcCCCccccC
Q 005009 30 PLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYP----HDSDSRFLFTKLPSLSLRRN 105 (719)
Q Consensus 30 ~~~~~~~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~----~~~d~~~~~~~~~~~~~~~~ 105 (719)
.-.+..|++.|||+||+||||||+||++|+++|. ++|++|+|||||++|+. .+.|..++.+....+
T Consensus 14 ~~~~~~m~k~i~ItgT~t~vGKT~vs~gL~~~L~-----~~G~~V~~fKPv~~g~~~~~~~~~D~~~~~~~~~~~----- 83 (242)
T 3qxc_A 14 RENLYFQGHMLFISATNTNAGKTTCARLLAQYCN-----ACGVKTILLKPIETGVNDAINHSSDAHLFLQDNRLL----- 83 (242)
T ss_dssp -----CCCEEEEEEESSTTSSHHHHHHHHHHHHH-----HTTCCEEEECCEECSCCTTTCCCSHHHHHHHHHHTT-----
T ss_pred hhHHhhcCcEEEEEeCCCCCcHHHHHHHHHHHHH-----hCCCceEEEeeeecCCcccCCCCchHHHHHHHHHHH-----
Confidence 3455678899999999999999999999999995 88999999999999886 357777652221000
Q ss_pred CCccccccchhhhhhHHHhhhhccCCCCCCCCccCCcccccccccccccccCCCCCccccccccceeecccCcChHHHHh
Q 005009 106 FPSSLILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAE 185 (719)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~ 185 (719)
..+++ ...++++.|++|++|+.+++
T Consensus 84 ------------------------~~g~~-------------------------------~~~~~p~~~~~p~sp~~aa~ 108 (242)
T 3qxc_A 84 ------------------------DRSLT-------------------------------LKDISFYRYHKVSAPLIAQQ 108 (242)
T ss_dssp ------------------------CTTCC-------------------------------HHHHCCEECSSSSCHHHHHH
T ss_pred ------------------------hCCCC-------------------------------hHHeeeEEECCCCChHHHHH
Confidence 00011 12378999999999999999
Q ss_pred HhcCC--CCCHHHHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCCh
Q 005009 186 RESGG--VVGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGG 263 (719)
Q Consensus 186 ~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~ 263 (719)
++ +. .++.++|.+.|.++.+. +|++||||+||+++|+..+.+++|+|+.+++|||||++.++|+
T Consensus 109 ~~-g~~~~i~~~~I~~~~~~l~~~-------------~D~vlIEGagGl~~pl~~~~~~adlA~~l~~pVILV~~~~lg~ 174 (242)
T 3qxc_A 109 EE-DPNAPIDTDNLTQRLHNFTKT-------------YDLVIVEGAGGLCVPITLEENMLDFALKLKAKMLLISHDNLGL 174 (242)
T ss_dssp HH-CTTCCCCHHHHHHHHHHGGGT-------------CSEEEEECCSCTTCBSSSSCBHHHHHHHHTCEEEEEECCSTTH
T ss_pred Hc-CCCCcCCHHHHHHHHHHHHhc-------------CCEEEEECCCCccccccccchHHHHHHHcCCCEEEEEcCCCcH
Confidence 99 87 78999999999987654 9999999999999999888999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEccCCC
Q 005009 264 ISGTISAYESLKLRGYDVVAVVFEDHGL 291 (719)
Q Consensus 264 i~~~~~~~~~l~~~~~~v~gvi~N~~~~ 291 (719)
+++++++++.++.+|++ .|||+|++..
T Consensus 175 i~~~~lt~~~l~~~g~~-~GvIlN~v~~ 201 (242)
T 3qxc_A 175 INDCLLNDFLLKSHQLD-YKIAINLKGN 201 (242)
T ss_dssp HHHHHHHHHHHHTSSSC-EEEEECCCTT
T ss_pred HHHHHHHHHHHHhCCCC-EEEEEeCCCC
Confidence 99999999999999999 9999999943
|
| >3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=288.57 Aligned_cols=202 Identities=20% Similarity=0.285 Sum_probs=166.9
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCCC------hHHHHHHhcCCCccccCCCcc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDS------DSRFLFTKLPSLSLRRNFPSS 109 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~------d~~~~~~~~~~~~~~~~~~~~ 109 (719)
+|++|||+||+||+|||+||++|+++|. ++|++|.|||||++|+.... |..+ ... ++
T Consensus 3 ~mk~i~Itgt~t~vGKT~vt~~L~~~l~-----~~G~~V~~~KPv~~g~~~~~~~~~~~D~~~--~~~-~~--------- 65 (228)
T 3of5_A 3 AMKKFFIIGTDTEVGKTYISTKLIEVCE-----HQNIKSLCLKPVASGQSQFSELCEDVESIL--NAY-KH--------- 65 (228)
T ss_dssp TCEEEEEEESSSSSCHHHHHHHHHHHHH-----HTTCCEEEECSEEESBCSSSSSBHHHHHHH--HHT-TT---------
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHH-----HCCCeeEEecceeecCccCCCCCChHHHHH--Hhc-CC---------
Confidence 4689999999999999999999999995 89999999999999875432 3222 111 11
Q ss_pred ccccchhhhhhHHHhhhhccCCCCCCCCccCCcccccccccccccccCCCCCccccccccceeecccCcChHHHHhHhcC
Q 005009 110 LILSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESG 189 (719)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~ 189 (719)
+.+ ...+|++.|+.|++||.+++++ +
T Consensus 66 ----------------------~~~-------------------------------~~~~~~~~~~~p~sp~~aa~~~-~ 91 (228)
T 3of5_A 66 ----------------------KFT-------------------------------AAEINLISFNQAVAPHIIAAKT-K 91 (228)
T ss_dssp ----------------------SSC-------------------------------HHHHCSEEESSSSCHHHHHHHT-T
T ss_pred ----------------------CCC-------------------------------hhhEEEEEECCCCCHHHHHHHc-C
Confidence 111 1237899999999999999998 8
Q ss_pred CCCCHHHHHHHHHH-HHhccccccccccccCcCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHH
Q 005009 190 GVVGDSKVIETLGK-CLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTI 268 (719)
Q Consensus 190 ~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~ 268 (719)
..++.+++.+.+.+ +.+. +|++||||+||+++|+..+.+++|+|+.+++|||||++.++|++++++
T Consensus 92 ~~i~~~~i~~~~~~~l~~~-------------~D~vlIEgaggl~~p~~~~~~~adla~~l~~pviLV~~~~~~~i~~~~ 158 (228)
T 3of5_A 92 VDISIENLKQFIEDKYNQD-------------LDILFIEGAGGLLTPYSDHTTQLDLIKALQIPVLLVSAIKVGCINHTL 158 (228)
T ss_dssp CCCCHHHHHHHHHGGGGSS-------------CSEEEEEEEEETTCBSSSSCBHHHHHHHHTCCEEEEEECSTTHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcc-------------CCEEEEECCCccccccccchhHHHHHHHcCCCEEEEEcCCcchHHHHH
Confidence 88899999999987 5543 999999999999999988899999999999999999999999999999
Q ss_pred HHHHHHHhCCCcEEEEEEccCCC--C----CHHHHHHhhcCCCcEEe-cCCCCCCCcchhhhhhhhc
Q 005009 269 SAYESLKLRGYDVVAVVFEDHGL--V----NEVPLMSYLRNRVPVLV-LPPLPQDSSNDLMEWFDES 328 (719)
Q Consensus 269 ~~~~~l~~~~~~v~gvi~N~~~~--~----~~~~l~~~~~~~~pvlg-lP~~~~~~~~~~~~~l~~~ 328 (719)
.+++.++.+|+++.|||+|++.. . +.+.|++++ ++||+| || ...++..|++..
T Consensus 159 ~~~~~l~~~~~~i~GvIlN~~~~~~~~~~~~~~~l~~~~--g~pvLG~iP-----~~~~~~~~~~~~ 218 (228)
T 3of5_A 159 LTINELNRHNIKLAGWIANCNDSNIKYIDEQINTIEELS--GYKCSAKIS-----RNADYLDFIDLS 218 (228)
T ss_dssp HHHHHHHHTTCCEEEEEEEECCTTCSCHHHHHHHHHHHH--SCCCSEEEE-----SSCCHHHHHHHH
T ss_pred HHHHHHHhCCCcEEEEEEECcCCcchhhHHHHHHHHHhh--CCCEEEECC-----CchHhhhhcCHH
Confidence 99999999999999999999832 2 244455555 999999 99 234566666543
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=297.66 Aligned_cols=258 Identities=20% Similarity=0.269 Sum_probs=209.3
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. ++||.||+ +|||+.+++++.++||+ ||+|.+|+.++++++.+... .+..+...+++++|++
T Consensus 18 ~~~~~~~~~g~--~~~d~~g~----~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~la~ 89 (392)
T 3ruy_A 18 LPIVISKAEGV--WVEDPEGN----RYMDLLSAYSAVNQGHR-HPKIINALIDQANRVTLTSR-AFHSDQLGPWYEKVAK 89 (392)
T ss_dssp CSCEECEEEBT--EEECTTCC----EEEESSHHHHTCTTCBT-CHHHHHHHHHHHTTCSCCCT-TSEETTHHHHHHHHHH
T ss_pred CCceEEeeeeC--EEEeCCCC----EEEEcCCChhhhccCCC-CHHHHHHHHHHHHhcccccc-ccCCHHHHHHHHHHHH
Confidence 46678887776 79999999 99999999999999999 99999999999998776542 2457788999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
..+ .++++|++||+||++.|++++++....++|. .+++.+||+...+|||.+.+++++++...++.
T Consensus 90 ~~g---~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~-----------~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~ 155 (392)
T 3ruy_A 90 LTN---KEMVLPMNTGAEAVETAIKTARRWAYDVKKV-----------EANRAEIIVCEDNFHGRTMGAVSMSSNEEYKR 155 (392)
T ss_dssp HHT---CSEEEEESSHHHHHHHHHHHHHHHHHHTSCC-----------CTTCCEEEEETTCCCCSSHHHHHTCSCTTTTT
T ss_pred hcC---CCEEEEeCcHHHHHHHHHHHHHHhhhhccCC-----------CCCCcEEEEEcCCcCCCCHhhhhccCChhhcc
Confidence 887 4799999999999999999984221222221 13356899999999999999999887544433
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
. +.+.+ + +... ++++| .+.+++.+.
T Consensus 156 ~--------~~~~~--~------~~~~----------------~~~~d------------------~~~l~~~l~----- 180 (392)
T 3ruy_A 156 G--------FGPML--P------GIIV----------------IPYGD------------------LEALKAAIT----- 180 (392)
T ss_dssp T--------CCSCC--S------SEEE----------------ECTTC------------------HHHHHHHCC-----
T ss_pred c--------cCCCC--C------CCee----------------eCccc------------------HHHHHHHhc-----
Confidence 2 11100 0 0001 11233 255666663
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
.++++|++||+ ++..|.+.++++|+++|.++|++||++||+||+|+|||++|++++++++++.||++|+||+|+||
T Consensus 181 ---~~~~~v~~~~~-~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~SK~l~gG 256 (392)
T 3ruy_A 181 ---PNTAAFILEPI-QGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNVTPDMYILGKALGGG 256 (392)
T ss_dssp ---TTEEEEEECSS-BSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTT
T ss_pred ---cCeEEEEEeCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhccCCCCCEEEEchhhhCC
Confidence 47899999997 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchheeEeCHHHHhhhcC
Q 005009 695 VIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~~ 713 (719)
++|+|++++++++++.+..
T Consensus 257 ~~~~G~~~~~~~~~~~~~~ 275 (392)
T 3ruy_A 257 VFPISCAAANRDILGVFEP 275 (392)
T ss_dssp TSCCEEEEECHHHHTTCCT
T ss_pred hhhhEEEEECHHHHhhhcc
Confidence 8899999999999987754
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.8e-31 Score=290.74 Aligned_cols=255 Identities=27% Similarity=0.345 Sum_probs=206.5
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++++++|. ++||.+|+ +|||+.++++++++||+ ||+|.+|+.++++++.+.. ..+.++...+++++|++
T Consensus 21 ~~~~~~~~~g~--~~~~~~g~----~~lD~~~~~~~~~lg~~-~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~ 92 (406)
T 4adb_A 21 APFIPVRGEGS--RLWDQQGK----EYIDFAGGIAVNALGHA-HPELREALNEQASKFWHTG-NGYTNEPVLRLAKKLID 92 (406)
T ss_dssp CSSCEEEEEBT--EEEETTCC----EEEESSHHHHTCTTCBT-CHHHHHHHHHHHTTCSCCC-TTSCCHHHHHHHHHHHH
T ss_pred CCceEEeeccC--EEEeCCCC----EEEECCCchhhcccCCC-CHHHHHHHHHHHHhccccc-CCcCCHHHHHHHHHHHh
Confidence 35677787776 79999999 99999999999999999 9999999999998865543 34567889999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
..+ .++++|++||++|++.|++++ +.+...+|. +++.+||..+.+|||.+..++.+++...++.
T Consensus 93 ~~~---~~~v~~~~gg~~a~~~al~~~-~~~~~~~~~------------~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~ 156 (406)
T 4adb_A 93 ATF---ADRVFFCNSGAEANEAALKLA-RKFAHDRYG------------SHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQ 156 (406)
T ss_dssp HSS---CSEEEEESSHHHHHHHHHHHH-HHHHHHHTC------------TTCCEEEEETTCCCCSSHHHHHHSSCGGGTG
T ss_pred hCC---CCeEEEeCcHHHHHHHHHHHH-HHHHHhcCC------------CCCcEEEEECCCcCCCcHHHhhccCCccccc
Confidence 987 469999999999999999988 444322222 3456899999999999999888876543322
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
. +.+.. .+...++ ++| .+.+++.+.
T Consensus 157 ~------------~~~~~----~~~~~~~----------------~~d------------------~~~l~~~l~----- 181 (406)
T 4adb_A 157 D------------FAPLP----ADIRHAA----------------YND------------------INSASALID----- 181 (406)
T ss_dssp G------------GCSCC----SSEEEEC----------------TTC------------------HHHHHTTCS-----
T ss_pred c------------CCCCC----CCceEeC----------------CCc------------------HHHHHHHhc-----
Confidence 1 00000 0111111 222 244554442
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
.++++|++||+ ++.||+++++.+++++|.++|++||++||+||+|+|||++|.+++++.+++.||++|++|++++|
T Consensus 182 ---~~~~~v~~~p~-np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~t~sK~~~~G 257 (406)
T 4adb_A 182 ---DSTCAVIVEPI-QGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDLLTTAKALGGG 257 (406)
T ss_dssp ---TTEEEEEECSE-ETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEECGGGGTT
T ss_pred ---CCeEEEEEeCC-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCCCCCEEEechhhcCC
Confidence 47899999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchheeEeCHHHHhhhcC
Q 005009 695 VIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~~ 713 (719)
+|+|++++++++++.+..
T Consensus 258 -~r~G~~~~~~~~~~~~~~ 275 (406)
T 4adb_A 258 -FPVGALLATEECARVMTV 275 (406)
T ss_dssp -SCCEEEEECHHHHHTCCT
T ss_pred -CCeEEEEEcHHHHhhhcc
Confidence 799999999999988754
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.5e-31 Score=287.90 Aligned_cols=281 Identities=24% Similarity=0.323 Sum_probs=214.0
Q ss_pred hhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccc
Q 005009 356 RAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHV 435 (719)
Q Consensus 356 ~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~ 435 (719)
++.+++|++++. ..|.++.+++|. ++||.+|+ +|||+.++.|+.++||. ||+|.+|+.+++++..+.
T Consensus 10 ~~~~~~~~~~~~------~~~~~~~~~~g~--~~~d~~g~----~~id~~~~~~~~~lg~~-~~~v~~a~~~~~~~~~~~ 76 (426)
T 1sff_A 10 RRSQAIPRGVGQ------IHPIFADRAENC--RVWDVEGR----EYLDFAGGIAVLNTGHL-HPKVVAAVEAQLKKLSHT 76 (426)
T ss_dssp HHHHHSCTTBCC------SEEEEEEEEEBT--EEEETTCC----EEEESSHHHHTCTTCBT-CHHHHHHHHHHTTTCSCC
T ss_pred HHHHhcCccccc------cCCceEEecccC--EEEeCCCC----EEEEcccChhhcccCCC-CHHHHHHHHHHHHhCCCc
Confidence 334445555432 247788887775 79999999 99999999999999999 999999999999876543
Q ss_pred cCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCC
Q 005009 436 MFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGS 515 (719)
Q Consensus 436 ~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~s 515 (719)
....+.++...+|.++|+++++.+.-++++|+++|+||++.|+++| |.++++ .+||..+.+
T Consensus 77 ~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a-~~~~~~------------------~~vi~~~p~ 137 (426)
T 1sff_A 77 CFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIA-RAATKR------------------SGTIAFSGA 137 (426)
T ss_dssp CTTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHH-HHHHTC------------------CEEEEETTC
T ss_pred cccccCCHHHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHH-HHhhCC------------------CeEEEECCC
Confidence 2223447788999999999884321278999999999999999988 555432 379999999
Q ss_pred cccCccccccccCCC-CCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCch
Q 005009 516 YHGDTLGAMEAQAPS-PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSS 594 (719)
Q Consensus 516 yHG~t~galslt~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~ 594 (719)
|||.+..++.+++.. .++.. +++. ..+...++++..++ +.
T Consensus 138 y~~~~~~~~~~~g~~~~~~~~--------~~~~--------~~~v~~v~~~~~~~-----------~~------------ 178 (426)
T 1sff_A 138 YHGRTHYTLALTGKVNPYSAG--------MGLM--------PGHVYRALYPCPLH-----------GI------------ 178 (426)
T ss_dssp CCCSSHHHHHHSSCCTTTTTT--------SCCC--------CSSEEEECCCBGGG-----------TB------------
T ss_pred cCCCchHhhhhcCCccccccc--------cCCC--------CCCcEEeCCCcccc-----------cc------------
Confidence 999998888877642 12211 1110 01223344442221 00
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccc
Q 005009 595 DLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT 674 (719)
Q Consensus 595 ~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a 674 (719)
......+.+++.+.+. .++.++++|++||+ +++.|.+.++++++++|.++|++||++||+||+++|||++|.+++
T Consensus 179 -~~~~d~~~l~~~l~~~---~~~~~~~~v~~~p~-~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~ 253 (426)
T 1sff_A 179 -SEDDAIASIHRIFKND---AAPEDIAAIVIEPV-QGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFA 253 (426)
T ss_dssp -CHHHHHHHHHHHHHHT---CCGGGEEEEEECSB-CTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSG
T ss_pred -chHHHHHHHHHHHHhc---cCCCceEEEEEecc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccchhh
Confidence 0011135677777531 12357899999998 888998999999999999999999999999999999999999888
Q ss_pred ccccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 675 ADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 675 ~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
++.+++.||+++++|++|+| +|+|++++++++++.+..
T Consensus 254 ~~~~~~~~di~s~sK~~~~G-lriG~~~~~~~~~~~l~~ 291 (426)
T 1sff_A 254 MEQMGVAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAP 291 (426)
T ss_dssp GGGTTSCCSEEEECGGGGTS-SCCEEEEEEHHHHTTSCT
T ss_pred hhhcCCCCCEEEEcccccCC-CceEEEEEcHHHHhhhcc
Confidence 89999999999999999999 799999999999988753
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=266.93 Aligned_cols=253 Identities=22% Similarity=0.314 Sum_probs=198.9
Q ss_pred CCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHH
Q 005009 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (719)
Q Consensus 374 ~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~ 453 (719)
..|.++.+++|. ++||.+|+ +|||+.+++|++++||+ ||++.+|+.++++++.+.. ..+..+...+++++|+
T Consensus 21 ~~~~~~~~~~g~--~~~d~~g~----~~ld~~~~~~~~~lg~~-~~~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la 92 (397)
T 2ord_A 21 RFPATFVYGKGS--WIYDEKGN----AYLDFTSGIAVNVLGHS-HPRLVEAIKDQAEKLIHCS-NLFWNRPQMELAELLS 92 (397)
T ss_dssp CCSCEEEEEEBT--EEEETTCC----EEEESSHHHHTCTTCBT-CHHHHHHHHHHHHHCSCCC-TTSEEHHHHHHHHHHH
T ss_pred CCCceEEeeecC--EEEECCCC----EEEECCccccccccCCC-CHHHHHHHHHHHHhcccCc-cccCCHHHHHHHHHHH
Confidence 457788887776 79999999 99999999999999999 9999999999998866532 2244678899999999
Q ss_pred hccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCC
Q 005009 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (719)
Q Consensus 454 ~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~ 533 (719)
++.+ .++++|++||+||++.|++.+ +.+... |. +++.+||.++.+|||.+..++.+++...++
T Consensus 93 ~~~g---~~~v~~~~gg~~a~~~al~~~-~~~~~~-~~------------~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~ 155 (397)
T 2ord_A 93 KNTF---GGKVFFANTGTEANEAAIKIA-RKYGKK-KS------------EKKYRILSAHNSFHGRTLGSLTATGQPKYQ 155 (397)
T ss_dssp HTTT---SCEEEEESSHHHHHHHHHHHH-HHHHHH-HC------------TTCCEEEEEBTCCCCSSHHHHHHSBCHHHH
T ss_pred HhcC---CCeEEEeCCHHHHHHHHHHHH-HHHhhc-CC------------CCCceEEEEcCCcCCCchhhhhccCChhhc
Confidence 9886 479999999999999999988 433211 00 223579999999999988777766532111
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
.. +.+.+ .+...++ ++| .+.+++.+.
T Consensus 156 ~~--------~~p~~--------~~~~~~~----------------~~d------------------~~~l~~~l~---- 181 (397)
T 2ord_A 156 KP--------FEPLV--------PGFEYFE----------------FNN------------------VEDLRRKMS---- 181 (397)
T ss_dssp GG--------GCSCC--------TTEEEEC----------------TTC------------------HHHHHHHCC----
T ss_pred cc--------cCCCC--------CCeeEec----------------CCC------------------HHHHHHHhh----
Confidence 10 00000 0111111 222 245666663
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCC
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lgg 693 (719)
+++++|++||+ ++..|.+.++.+++++|.++|++||++||+||+++|||++|+++..+.+++.||+++++|.+++
T Consensus 182 ----~~~~~v~~~~~-~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~ 256 (397)
T 2ord_A 182 ----EDVCAVFLEPI-QGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVLTTAKGLGG 256 (397)
T ss_dssp ----TTEEEEEECSE-ECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEECGGGGT
T ss_pred ----cCeEEEEEecc-cCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhCCCCCeeeeccccCC
Confidence 36899999997 9999998889999999999999999999999999999999998888888999999999999999
Q ss_pred CccchheeEeCHHHHhhhc
Q 005009 694 GVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~ 712 (719)
| +++|+++++++++ .+.
T Consensus 257 G-~r~G~~~~~~~~~-~l~ 273 (397)
T 2ord_A 257 G-VPIGAVIVNERAN-VLE 273 (397)
T ss_dssp T-SCCEEEEECSTTC-CCC
T ss_pred C-cCeEEEEEchHhc-ccC
Confidence 9 6999999999877 654
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.8e-27 Score=255.37 Aligned_cols=251 Identities=23% Similarity=0.274 Sum_probs=198.4
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|.++.+++|. ++||.+|+ +|||+.++.+++++||. +|+|.+|+.+++++..+.. ..+..+...+++++|++
T Consensus 27 ~~~~~~~~~g~--~~~d~~g~----~~ld~~~~~~~~~~g~~-~~~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~ 98 (395)
T 1vef_A 27 HDLLIVRGQGA--RVWDAEGN----EYIDCVGGYGVANLGHG-NPEVVEAVKRQAETLMAMP-QTLPTPMRGEFYRTLTA 98 (395)
T ss_dssp CSSCEEEEEBT--EEEETTSC----EEEESSHHHHTCTTCBT-CHHHHHHHHHHHHHCCCCC-TTSCCHHHHHHHHHHHH
T ss_pred CCccEEecccC--EEEeCCCC----EEEEccCccccccCCCC-CHHHHHHHHHHHHhCCCCc-cccCCHHHHHHHHHHHH
Confidence 45677787775 79999999 99999999999999999 9999999999998765432 23457888999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
+.+.+ .+.++|++||++|++.|++.+ +.++. +.+||.++.+|||.+..++.+++....+.
T Consensus 99 ~~~~~-~~~v~~~~gg~~a~~~al~~~-~~~~~------------------~~~vi~~~~~y~~~~~~~~~~~g~~~~~~ 158 (395)
T 1vef_A 99 ILPPE-LNRVFPVNSGTEANEAALKFA-RAHTG------------------RKKFVAAMRGFSGRTMGSLSVTWEPKYRE 158 (395)
T ss_dssp TSCTT-EEEEEEESSHHHHHHHHHHHH-HHHHS------------------CCEEEEETTCCCCSSHHHHHTCCCHHHHG
T ss_pred hcCCC-cCEEEEcCcHHHHHHHHHHHH-HHHhC------------------CCeEEEEcCCcCCCchhhhhhcCCccccc
Confidence 88533 478999999999999999987 44432 24799999999998887776655321110
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
. +. |.. .+...++ ++| .+.+++.+.
T Consensus 159 ~--------~~-----p~~---~~~~~~~----------------~~d------------------~~~l~~~i~----- 183 (395)
T 1vef_A 159 P--------FL-----PLV---EPVEFIP----------------YND------------------VEALKRAVD----- 183 (395)
T ss_dssp G--------GC-----SCS---SCEEEEC----------------TTC------------------HHHHHHHCC-----
T ss_pred c--------cC-----CCC---CCeeEeC----------------CCc------------------HHHHHHHhc-----
Confidence 0 00 000 0000111 122 255666664
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
.++++|+++|+ ++..|.+.++++++++|.++|++||++||+||+++|||++|+.+.++.+++.||+++++|.+++|
T Consensus 184 ---~~~~~v~~~~~-~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~g 259 (395)
T 1vef_A 184 ---EETAAVILEPV-QGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTLAKALGGG 259 (395)
T ss_dssp ---TTEEEEEECSE-ETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTT
T ss_pred ---cCEEEEEEeCc-cCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhhcCCCCCEEEEcccccCC
Confidence 36889999998 89899999999999999999999999999999999999999988888889999999999999999
Q ss_pred ccchheeEeCHHHHhhhcC
Q 005009 695 VIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~~ 713 (719)
+++|++++++++++.+..
T Consensus 260 -~~~G~~~~~~~~~~~l~~ 277 (395)
T 1vef_A 260 -VPLGVAVMREEVARSMPK 277 (395)
T ss_dssp -SSCEEEEEEHHHHHTSCT
T ss_pred -CceEEEEehHHHHhhhcc
Confidence 799999999999887754
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.6e-26 Score=245.34 Aligned_cols=256 Identities=22% Similarity=0.287 Sum_probs=198.5
Q ss_pred CCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHH
Q 005009 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (719)
Q Consensus 374 ~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~ 453 (719)
..|.++.+++|. ++||.+|+ .|||+.++..++.+||. +|++.+|+.+++++..+.. ..+..+...+|.++|+
T Consensus 9 ~~~~~~~~~~g~--~~~~~~g~----~~ld~~~~~~~~~~g~~-~~~v~~a~~~~~~~~~~~~-~~y~~~~~~~l~~~la 80 (375)
T 2eh6_A 9 RLPVKFVRGKGV--YLYDEEGK----EYLDFVSGIGVNSLGHA-YPKLTEALKEQVEKLLHVS-NLYENPWQEELAHKLV 80 (375)
T ss_dssp CEEEEEEEEEBT--EEEETTCC----EEEESSHHHHTCTTCBS-CHHHHHHHHHHHHHCSCCC-TTBCCHHHHHHHHHHH
T ss_pred CCCccEEeeecC--EEEeCCCC----EEEEcCCcccccccCCC-CHHHHHHHHHHHHhccccC-cccCCHHHHHHHHHHH
Confidence 357788887776 79999999 99999999988899999 9999999999998764322 2344667889999999
Q ss_pred hccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCC
Q 005009 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (719)
Q Consensus 454 ~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~ 533 (719)
++.+. -+.+++++||++|++.|++++ +.++.+ +. +++.+||..+.+|||....++.+++...++
T Consensus 81 ~~~g~--~~~v~~~~g~t~a~~~~~~~~-~~~~~~-~~------------~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~ 144 (375)
T 2eh6_A 81 KHFWT--EGKVFFANSGTESVEAAIKLA-RKYWRD-KG------------KNKWKFISFENSFHGRTYGSLSATGQPKFH 144 (375)
T ss_dssp HTSSS--CEEEEEESSHHHHHHHHHHHH-HHHHHH-TT------------CCCCEEEEEBTCCCCSSHHHHHHCBCGGGT
T ss_pred hhcCC--CCeEEEeCchHHHHHHHHHHH-HHHhcc-CC------------CCCCEEEEECCCcCCCchhhhhhcCCcccc
Confidence 98863 178999999999999999987 544311 00 234689999999999988777765432211
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
.. .. |. .++...++ +.| .+.+++.+.
T Consensus 145 ~~--------~~-----~~---~~~~~~~~----------------~~d------------------~~~l~~~l~---- 170 (375)
T 2eh6_A 145 KG--------FE-----PL---VPGFSYAK----------------LND------------------IDSVYKLLD---- 170 (375)
T ss_dssp TT--------TC-----SC---CSSEEEEC----------------TTC------------------HHHHHTTCC----
T ss_pred CC--------CC-----CC---CCCceeCC----------------Cch------------------HHHHHHHhc----
Confidence 10 00 00 00111111 122 244554442
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCC
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lgg 693 (719)
.++++|+++|. ++..|.+.++++++++|.++|++||+++|+||+++|||++|..+..+.+|+.||++++||.+++
T Consensus 171 ----~~~~~v~~~~~-~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~d~~s~SK~~~~ 245 (375)
T 2eh6_A 171 ----EETAGIIIEVI-QGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVIALAKGLGG 245 (375)
T ss_dssp ----TTEEEEEECSE-ETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGT
T ss_pred ----CCeEEEEEeCc-cCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCCCCCEEEEcccccC
Confidence 36899999997 9999999999999999999999999999999999999999987778888989999999999999
Q ss_pred CccchheeEeCHHHHhhhcC
Q 005009 694 GVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~~ 713 (719)
| +++|++++++++++.+..
T Consensus 246 g-~~~G~~~~~~~~~~~~~~ 264 (375)
T 2eh6_A 246 G-VPIGAILAREEVAQSFTP 264 (375)
T ss_dssp T-SCCEEEEEEHHHHTTCCT
T ss_pred C-CCeEEEEEcHHHHhhhcC
Confidence 9 799999999999887754
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.87 E-value=9.4e-22 Score=216.39 Aligned_cols=236 Identities=12% Similarity=0.048 Sum_probs=169.0
Q ss_pred ecCCceEEEeCC--CCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCC
Q 005009 382 RCGENFSVYQDQ--KNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG 459 (719)
Q Consensus 382 ~~G~g~~l~D~d--G~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~ 459 (719)
.+|.|+++||.+ |+ .||||..| .+..+. ||+|++|++++++...+.. .....+...++++.|.+..+..
T Consensus 46 ~~g~g~~~~d~~~~g~----~~i~~~~~---~~~~~~-~~~v~~a~~~~~~~~~~~y-~~~~~~l~~~l~~~l~~~~g~~ 116 (421)
T 3l8a_A 46 RLNQFTYKWKTSENNP----ELLQMWVA---DMDFLP-VPEIKEAIINYGREHIFGY-NYFNDDLYQAVIDWERKEHDYA 116 (421)
T ss_dssp CTTTTBTTTGGGTTCT----TCEECCSS---CCCSCC-CHHHHHHHHHHHHHCCSSC-BCCCHHHHHHHHHHHHHHHCCC
T ss_pred cCCCCCccccccCCCC----CeeecccC---CCCCCC-CHHHHHHHHHHHhcCCcCC-CCCCHHHHHHHHHHHHHHhCCC
Confidence 346667899999 78 99999664 345568 9999999999998743322 1223566777888887765411
Q ss_pred -CCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCC
Q 005009 460 -WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQ 538 (719)
Q Consensus 460 -~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~ 538 (719)
..++++|+++|+||++.|++.+. +. ..+||+...+|||.+..+.... ..
T Consensus 117 ~~~~~v~~~~g~~ea~~~a~~~~~-----~~----------------gd~Vi~~~~~y~~~~~~~~~~g-~~-------- 166 (421)
T 3l8a_A 117 VVKEDILFIDGVVPAISIALQAFS-----EK----------------GDAVLINSPVYYPFARTIRLND-HR-------- 166 (421)
T ss_dssp CCGGGEEEESCHHHHHHHHHHHHS-----CT----------------EEEEEEEESCCHHHHHHHHHTT-EE--------
T ss_pred CCHHHEEEcCCHHHHHHHHHHHhc-----CC----------------CCEEEECCCCcHHHHHHHHHCC-CE--------
Confidence 14689999999999999999871 11 2479999999999655433321 10
Q ss_pred CCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCC
Q 005009 539 PWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSG 618 (719)
Q Consensus 539 ~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~ 618 (719)
...+++. + .+ ..+ .-| .+.|++.+.+ .
T Consensus 167 --------------------~~~~~~~--~------------~~--~~~--~~d--------~~~le~~i~~-------~ 193 (421)
T 3l8a_A 167 --------------------LVENSLQ--I------------IN--GRF--EID--------FEQLEKDIID-------N 193 (421)
T ss_dssp --------------------EEEEECE--E------------ET--TEE--ECC--------HHHHHHHHHH-------T
T ss_pred --------------------EEecccc--c------------cC--CCe--eeC--------HHHHHHHhhc-------c
Confidence 0011110 0 00 000 001 3567777752 3
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc----cc--cccCCCcceeeehhccC
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET----TA--DLLGCVPDIACYGKLLT 692 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~----a~--e~~gv~PDIvtlgK~Lg 692 (719)
++++|++++. ++.+| .+++++++++|+++|++||++||+||||++|+++|..+ .. +..+..+++.+++|++|
T Consensus 194 ~~~~vil~~p-~nptG-~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g 271 (421)
T 3l8a_A 194 NVKIYLLCSP-HNPGG-RVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFN 271 (421)
T ss_dssp TEEEEEEESS-BTTTT-BCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHT
T ss_pred CCeEEEECCC-CCCCC-CcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhcc
Confidence 6889999997 99999 56678889999999999999999999999999999632 21 23466688999999998
Q ss_pred -CCccchheeEeC-HHHHhhhc
Q 005009 693 -GGVIPLAATLAT-NAVFDSFV 712 (719)
Q Consensus 693 -gG~~Plsavl~~-~~i~~~~~ 712 (719)
+| +|+|+++++ +++++.+.
T Consensus 272 ~~G-~~~G~~~~~~~~l~~~~~ 292 (421)
T 3l8a_A 272 IAG-TKNSFAIIQNESLRRKFQ 292 (421)
T ss_dssp CGG-GCCEEEECCSHHHHHHHH
T ss_pred Cch-hheEeEEcCCHHHHHHHH
Confidence 78 799999998 88887764
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.7e-21 Score=212.43 Aligned_cols=225 Identities=12% Similarity=0.070 Sum_probs=169.7
Q ss_pred EEE-eecCCceEEEeCCCCcccceeeeccccccccCCC-CCCCHHHHHHHHHhhhhccccc----CCCCCChHHHHHHHH
Q 005009 378 VID-SRCGENFSVYQDQKNKFIGQQFDACASWWTQGPD-ATLQIELARDMGYTAARFGHVM----FPENVYEPALECAEL 451 (719)
Q Consensus 378 vi~-~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lG-H~~hP~V~~Av~~q~~~~~~~~----~~~~~~~~~~~Lae~ 451 (719)
++. +++|. +++| ||+ +||||.++ .++| |. ||+|.+|+.+++++++... .....++...+|+++
T Consensus 49 ~~~~~~~g~--~~~~-~g~----~~id~~~~---~~lg~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~ 117 (427)
T 2w8t_A 49 VMEQVKSPT--EAVI-RGK----DTILLGTY---NYMGMTF-DPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQA 117 (427)
T ss_dssp CCSEEEETT--EEEE-TTE----EEEECSCC---CTTCGGG-CHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHH
T ss_pred eccccCCCc--eEee-CCc----eEEEEECc---ccccCCC-CHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHH
Confidence 344 66665 7999 999 99999996 4689 68 9999999999998855321 111246788999999
Q ss_pred HHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCC
Q 005009 452 LLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP 531 (719)
Q Consensus 452 L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~ 531 (719)
|+++.+ .+.+++++||++|++.|++.. ++ +.+.|.++..+|+++..++..++..
T Consensus 118 la~~~g---~~~~i~~~sGs~a~~~al~~l----~~------------------~gd~vl~~~~~h~~~~~~~~~~g~~- 171 (427)
T 2w8t_A 118 LRDFYG---TTGAIVFSTGYMANLGIISTL----AG------------------KGEYVILDADSHASIYDGCQQGNAE- 171 (427)
T ss_dssp HHHHHT---CSEEEEESCHHHHHHHHHHHH----SC------------------TTCEEEEETTCCHHHHHHHHHSCSE-
T ss_pred HHHHhC---CCceEEecCcHHHHHHHHHHh----cC------------------CCCEEEECCcccHHHHHHHHHcCCe-
Confidence 999986 468999999999999998876 11 2356677888999877666554311
Q ss_pred CCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcC
Q 005009 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611 (719)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~ 611 (719)
.+.+| ++| .+.|++.+.+.
T Consensus 172 -----------------------------~~~~~--------------~~d------------------~~~le~~l~~~ 190 (427)
T 2w8t_A 172 -----------------------------IVRFR--------------HNS------------------VEDLDKRLGRL 190 (427)
T ss_dssp -----------------------------EEEEC--------------TTC------------------HHHHHHHHHTS
T ss_pred -----------------------------eEEeC--------------CCC------------------HHHHHHHHHhc
Confidence 11111 233 25677777641
Q ss_pred CCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccC--ccccCccccccccCCCcc----ee
Q 005009 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG--FWRLGVETTADLLGCVPD----IA 685 (719)
Q Consensus 612 ~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTG--fGRtG~~~a~e~~gv~PD----Iv 685 (719)
...++++|++||+ ++..|.+.+ +++|+++|++||++||+||+|++ +|++|.. ..+++++.|| +.
T Consensus 191 ----~~~~~~~v~~~~~-~n~tG~~~~----l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~-~~~~~~~~~~~di~~~ 260 (427)
T 2w8t_A 191 ----PKEPAKLVVLEGV-YSMLGDIAP----LKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRG-VYEAQGLEGQIDFVVG 260 (427)
T ss_dssp ----CSSSCEEEEEESE-ETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCC-HHHHTTCTTCCSEEEE
T ss_pred ----cCCCCeEEEEcCC-CCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCCc-hHhhcCCCcCCcEEEe
Confidence 1137899999998 999999887 99999999999999999999986 4556665 4567888877 67
Q ss_pred eehhccCCCccchheeEeCHHHHhhhcC
Q 005009 686 CYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 686 tlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
+++|.+| +|.|++++++++++.+..
T Consensus 261 s~sK~~g---~~gG~v~~~~~l~~~l~~ 285 (427)
T 2w8t_A 261 TFSKSVG---TVGGFVVSNHPKFEAVRL 285 (427)
T ss_dssp ESSSTTC---SCCEEEEECCTTGGGGGG
T ss_pred cchhhhc---cCCCEEEeCHHHHHHHHH
Confidence 9999996 466889999999887754
|
| >1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.8e-20 Score=187.34 Aligned_cols=205 Identities=22% Similarity=0.276 Sum_probs=157.5
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCC------CChHHHHHHhcCCCccccCCCcccc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPH------DSDSRFLFTKLPSLSLRRNFPSSLI 111 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~------~~d~~~~~~~~~~~~~~~~~~~~~~ 111 (719)
++|+|+++.+|+|||++|+.|+.+|. ++|+||.++||++++... +.|..++.... +.
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la-----~~G~rVll~dp~~~~~~~~~~~~~~~d~~~~~~~~-~~----------- 64 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAK-----AAGYRTAGYKPVASGSEKTPEGLRNSDALALQRNS-SL----------- 64 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHH-----HTTCCEEEECSEEESCBCCTTSCBCHHHHHHHHTC-SS-----------
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH-----HCCCCEEEEcceecCCccCCCCcChHHHHHHHHHh-CC-----------
Confidence 47999999999999999999999994 789999999998876532 12222222111 00
Q ss_pred ccchhhhhhHHHhhhhccCCCCCCCCccCCcccccccccccccccCCCCCccccccccceeecccCcChHHHHhHhcCCC
Q 005009 112 LSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGV 191 (719)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~ 191 (719)
. ......+++.+..|.+|+.++..+ +..
T Consensus 65 --------------------~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 92 (224)
T 1byi_A 65 --------------------Q-------------------------------LDYATVNPYTFAEPTSPHIISAQE-GRP 92 (224)
T ss_dssp --------------------C-------------------------------CCHHHHCSEEESSCSCHHHHHHHH-TCC
T ss_pred --------------------C-------------------------------CChhhcccEEeCCCCCHHHHHHHc-CCC
Confidence 0 000123456777889999887776 666
Q ss_pred CCHHHHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHH
Q 005009 192 VGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAY 271 (719)
Q Consensus 192 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~ 271 (719)
...+.+.+.+.++.++ ||+|||||++|+.+|......++++++.++.|||+|+....++++++..++
T Consensus 93 ~~~~~l~~~l~~l~~~-------------yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~~~~~~i 159 (224)
T 1byi_A 93 IESLVMSAGLRALEQQ-------------ADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTA 159 (224)
T ss_dssp CCHHHHHHHHHHHHTT-------------CSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh-------------CCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHHHHHHHH
Confidence 7788888888877644 999999999999998766688999999999999999999999999999999
Q ss_pred HHHHhCCCcEEEEEEccCCCC--C----HHHHHHhhcCCCcEEe-cCCCC-CCCcchhhhhhh
Q 005009 272 ESLKLRGYDVVAVVFEDHGLV--N----EVPLMSYLRNRVPVLV-LPPLP-QDSSNDLMEWFD 326 (719)
Q Consensus 272 ~~l~~~~~~v~gvi~N~~~~~--~----~~~l~~~~~~~~pvlg-lP~~~-~~~~~~~~~~l~ 326 (719)
+.++..++++.|+|+|++... . .+.+++.+ ++|+++ ||+.+ ..+..++.++++
T Consensus 160 ~~l~~~~~~i~gvvlN~~~~~~~~~~~~~~~l~~~~--~~~vl~~Ip~~~~~~~~~~~~~~~~ 220 (224)
T 1byi_A 160 QVIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMI--PAPLLGEIPWLAENPENAATGKYIN 220 (224)
T ss_dssp HHHHHTTCCEEEEEEECCSSCCTTHHHHHHHHHHHS--SSCEEEEECCCTTCTTCCCCGGGCC
T ss_pred HHHHHCCCcEEEEEEeCCCCchhhHHHHHHHHHHHc--CCCEEEECCCCcCCccHHHHHHHhc
Confidence 999989999999999998322 2 22344444 899999 99988 444446666664
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-20 Score=205.02 Aligned_cols=219 Identities=11% Similarity=-0.006 Sum_probs=165.3
Q ss_pred CCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhccccc----CCCCCChHHHHHHHHHHhccCCC
Q 005009 384 GENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKG 459 (719)
Q Consensus 384 G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~----~~~~~~~~~~~Lae~L~~~~~~~ 459 (719)
|.+++++|.+|+ +||||++ +.++|+..||+|++|+.+++++++... ......+...+++++|+++.+
T Consensus 48 ~~~~~~~~~~g~----~~ld~~s---~~~l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g-- 118 (409)
T 3kki_A 48 GKHLVLGKQASP----DDIILQS---NDYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTG-- 118 (409)
T ss_dssp SSCTTCCCCCCT----TSEECCC---SCTTCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHT--
T ss_pred CCeeeeCCCCCC----ceEEeec---cCccCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhC--
Confidence 444567888999 9999988 567888559999999999998854321 111234566789999999887
Q ss_pred CCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCC
Q 005009 460 WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQP 539 (719)
Q Consensus 460 ~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~ 539 (719)
.+.+++++||++|++.|++.. .++.+.|.++..+|+.+..++..++..
T Consensus 119 -~~~~i~~~sGt~a~~~~l~~~----------------------~~~gd~Vl~~~~~~~~~~~~~~~~g~~--------- 166 (409)
T 3kki_A 119 -FDECLLSQSGWNANVGLLQTI----------------------CQPNTNVYIDFFAHMSLWEGARYANAQ--------- 166 (409)
T ss_dssp -CSEEEEESCHHHHHHHHHHHH----------------------CCTTCEEEEETTSCHHHHHHHHHTTCE---------
T ss_pred -CCeEEEecchHHHHHHHHHHh----------------------cCCCCEEEECCCcCHHHHHHHHHcCCe---------
Confidence 457888999999999999876 122356778888998877766655321
Q ss_pred CccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCc
Q 005009 540 WYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGC 619 (719)
Q Consensus 540 ~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~ 619 (719)
.+++| .+| .+.+++.+.+ .+
T Consensus 167 ---------------------~~~~~--------------~~d------------------~~~le~~l~~-------~~ 186 (409)
T 3kki_A 167 ---------------------AHPFM--------------HNN------------------CDHLRMLIQR-------HG 186 (409)
T ss_dssp ---------------------EEEEC--------------TTC------------------HHHHHHHHHH-------HC
T ss_pred ---------------------EEEec--------------CCC------------------HHHHHHHHHh-------cC
Confidence 01111 122 2567777763 12
Q ss_pred EEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccC--ccccCccccccccCC--Ccce--eeehhccCC
Q 005009 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG--FWRLGVETTADLLGC--VPDI--ACYGKLLTG 693 (719)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTG--fGRtG~~~a~e~~gv--~PDI--vtlgK~Lgg 693 (719)
.++|++|++ ++..|.+.+ +++|+++|++||++||+||+|++ +|++|..+. +.+++ .+|| .+++|++++
T Consensus 187 ~~~vi~~~~-~nptG~~~~----l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~-~~~~~~~~~di~~~s~sK~~~~ 260 (409)
T 3kki_A 187 PGIIVVDSI-YSTLGTIAP----LAELVNISKEFGCALLVDESHSLGTHGPNGAGLL-AELGLTREVHFMTASLAKTFAY 260 (409)
T ss_dssp SCEEEEESB-CTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHH-HHHTCGGGCSEEEEESSSTTCS
T ss_pred CeEEEECCC-CCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCCCcch-hhcCCCCCCCEEEeecchhhCC
Confidence 489999998 999998887 99999999999999999999998 999998766 56777 5777 589999987
Q ss_pred CccchheeEeCHHHHhhhc
Q 005009 694 GVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~ 712 (719)
| .|++++++++++.+.
T Consensus 261 ~---gg~v~~~~~~~~~~~ 276 (409)
T 3kki_A 261 R---AGAIWCNNEVNRCVP 276 (409)
T ss_dssp S---CEEEEESSSGGGTHH
T ss_pred C---ceEEEECHHHHHHHH
Confidence 6 488999998887654
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-19 Score=196.78 Aligned_cols=227 Identities=13% Similarity=0.106 Sum_probs=167.9
Q ss_pred EEEeecCCceEEEeCCCCcccceeeeccccccccCCC-CCCCHHHHHHHHHhhhhcccccC----CCCCChHHHHHHHHH
Q 005009 378 VIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPD-ATLQIELARDMGYTAARFGHVMF----PENVYEPALECAELL 452 (719)
Q Consensus 378 vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lG-H~~hP~V~~Av~~q~~~~~~~~~----~~~~~~~~~~Lae~L 452 (719)
++++++|. |++| +|+ +||||.++ +++| |+ +|++.+++.+++.++.+... .....+...++.++|
T Consensus 29 ~~~~~~g~--~v~~-~g~----~~id~~~~---~~~g~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l 97 (399)
T 3tqx_A 29 IITSPQNA--EIKV-GEK----EVLNFCAN---NYLGLAD-HPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDI 97 (399)
T ss_dssp CBCSCSSS--EEEE-TTE----EEEECSSC---CTTSCTT-CHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHH
T ss_pred cccCCCCc--eEee-CCe----eEEEeecc---CcccccC-CHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHH
Confidence 45555555 7998 999 99999996 6789 78 99999999999988654321 112456688999999
Q ss_pred HhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCC
Q 005009 453 LQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPY 532 (719)
Q Consensus 453 ~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~ 532 (719)
++..+. +..++++||++|++.+++... ++.+.|.+...+|+.+..++...+..
T Consensus 98 a~~~~~---~~~i~~~sGt~a~~~~l~~~~----------------------~~gd~v~~~~~~~~~~~~~~~~~g~~-- 150 (399)
T 3tqx_A 98 SEFLGT---DDTILYSSCFDANGGLFETLL----------------------GPEDAIISDELNHASIIDGIRLCKAQ-- 150 (399)
T ss_dssp HHHHTC---SEEEEESCHHHHHHTTHHHHC----------------------CTTCEEEEETTCCHHHHHHHHSCCSE--
T ss_pred HHHHCC---CcEEEECchHHHHHHHHHHhc----------------------CCCCEEEECCcccHHHHHHHHHcCCc--
Confidence 998873 578888999999999987661 12356777888888776665554321
Q ss_pred CCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCC
Q 005009 533 TGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNP 612 (719)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~ 612 (719)
.+++| ++|. +.+++.+.+..
T Consensus 151 ----------------------------~~~~~--------------~~d~------------------~~l~~~l~~~~ 170 (399)
T 3tqx_A 151 ----------------------------RYRYK--------------NNAM------------------GDLEAKLKEAD 170 (399)
T ss_dssp ----------------------------EEEEC--------------TTCT------------------THHHHHHHHHH
T ss_pred ----------------------------eeEeC--------------CCCH------------------HHHHHHHHhhh
Confidence 01111 1221 23444444210
Q ss_pred CCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccc-cCc-cccCccccccccCC--Cccee--e
Q 005009 613 GLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVF-TGF-WRLGVETTADLLGC--VPDIA--C 686 (719)
Q Consensus 613 ~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVq-TGf-GRtG~~~a~e~~gv--~PDIv--t 686 (719)
..+.++++|+++++ ++..|.+.+ +++|.++|++||+++|+||++ .|+ +++|+. ..+.+++ .||++ +
T Consensus 171 --~~~~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~-~~~~~~~~~~~di~~~s 242 (399)
T 3tqx_A 171 --EKGARFKLIATDGV-FSMDGIIAD----LKSICDLADKYNALVMVDDSHAVGFIGENGRG-TPEYCGVADRVDILTGT 242 (399)
T ss_dssp --TTTCSSEEEEEESE-ETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCC-HHHHHTCTTCCSEEEEE
T ss_pred --ccCCCceEEEEeCC-CCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCCCc-hHHhhCCCCCCcEEEec
Confidence 11237899999997 999999887 999999999999999999999 575 666664 5667787 89999 8
Q ss_pred ehhccCCCccchheeEeCHHHHhhhc
Q 005009 687 YGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 687 lgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
++|.++ | +|.|.+++++++++.+.
T Consensus 243 ~sK~~~-g-~~gG~~~~~~~~~~~~~ 266 (399)
T 3tqx_A 243 LGKALG-G-ASGGYTSGHKEIIEWLR 266 (399)
T ss_dssp SSSSSC-S-SCCEEEEECHHHHHHHH
T ss_pred chHhcc-c-CceEEEEcCHHHHHHHH
Confidence 999999 5 57888999999988764
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.9e-19 Score=195.59 Aligned_cols=229 Identities=13% Similarity=0.086 Sum_probs=164.5
Q ss_pred EEEEeecCCceEEEeCCCCcccceeeeccccccccCCCC-CCCHHHHHHHHHhhhhcccccCC-C---CCChHHHHHHHH
Q 005009 377 TVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDA-TLQIELARDMGYTAARFGHVMFP-E---NVYEPALECAEL 451 (719)
Q Consensus 377 ~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH-~~hP~V~~Av~~q~~~~~~~~~~-~---~~~~~~~~Lae~ 451 (719)
.++++++| +|++|.+|+ +|||+.++ +++|| . +|++.+|+.+++++++..... . ...+...+|.++
T Consensus 29 ~~~~~~~g--~~~~~~~g~----~~id~~~~---~~~g~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~ 98 (401)
T 1fc4_A 29 RIITSAQQ--ADITVADGS----HVINFCAN---NYLGLAN-HPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQK 98 (401)
T ss_dssp CCBCSCSS--SEEEBTTSC----EEEECCCS---CTTSCTT-CHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHH
T ss_pred eeeccCCC--ceEEeeCCc----cEEEeecc---CcccccC-CHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHH
Confidence 35556555 489999999 99999997 46997 7 999999999999876542110 0 115678899999
Q ss_pred HHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCC
Q 005009 452 LLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP 531 (719)
Q Consensus 452 L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~ 531 (719)
|+++++. +..++++||++|++.|++.+. ++.+.|.+...+|+.+..++...|..
T Consensus 99 la~~~g~---~~~i~~~sGs~a~~~~~~~~~----------------------~~gd~v~~~~~~~~~~~~~~~~~g~~- 152 (401)
T 1fc4_A 99 LAAFLGM---EDAILYSSCFDANGGLFETLL----------------------GAEDAIISDALNHASIIDGVRLCKAK- 152 (401)
T ss_dssp HHHHHTC---SEEEEESCHHHHHHTTHHHHC----------------------CTTCEEEEETTCCHHHHHHHHTSCSE-
T ss_pred HHHHhCC---CcEEEeCChHHHHHHHHHHHc----------------------CCCCEEEEcchhHHHHHHHHHHcCCc-
Confidence 9999873 477888999999999888761 12356777888888766554433210
Q ss_pred CCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcC
Q 005009 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611 (719)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~ 611 (719)
.+.+| ..| .+.+++.+.+.
T Consensus 153 -----------------------------~~~~~--------------~~d------------------~~~l~~~l~~~ 171 (401)
T 1fc4_A 153 -----------------------------RYRYA--------------NND------------------MQELEARLKEA 171 (401)
T ss_dssp -----------------------------EEEEC--------------TTC------------------HHHHHHHHHHH
T ss_pred -----------------------------eEEEC--------------CCC------------------HHHHHHHHHHh
Confidence 11111 111 13455555421
Q ss_pred CCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccc-cCc-cccCccccccccCCCc--cee--
Q 005009 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVF-TGF-WRLGVETTADLLGCVP--DIA-- 685 (719)
Q Consensus 612 ~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVq-TGf-GRtG~~~a~e~~gv~P--DIv-- 685 (719)
. ..+.++++|++++. ++..|.+.+ +++|.++|++||+++|+||++ +|+ +++|+.+ .+.+++.| |++
T Consensus 172 ~--~~~~~~~~v~~~~~-~nptG~~~~----~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~-~~~~~~~~~~di~~~ 243 (401)
T 1fc4_A 172 R--EAGARHVLIATDGV-FSMDGVIAN----LKGVCDLADKYDALVMVDDSHAVGFVGENGRGS-HEYCDVMGRVDIITG 243 (401)
T ss_dssp H--HTTCSSEEEEEESE-ETTTTEECC----HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCH-HHHTTCTTCCSEEEE
T ss_pred h--ccCCCceEEEEeCC-cCCCCCCCC----HHHHHHHHHHcCCEEEEECcccccccCCCCCcc-HHHcCCCcCCcEEEe
Confidence 0 01126789999997 899998887 999999999999999999999 588 5778764 44566654 887
Q ss_pred eehhccCCCccchheeEeCHHHHhhhc
Q 005009 686 CYGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 686 tlgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
+++|.++|+. .|++++++++++.+.
T Consensus 244 s~sK~~~~~~--gG~~~~~~~~~~~l~ 268 (401)
T 1fc4_A 244 TLGKALGGAS--GGYTAARKEVVEWLR 268 (401)
T ss_dssp ESSSTTCSSS--CEEEEECHHHHHHHH
T ss_pred cchhhccCCC--CEEEEcCHHHHHHHH
Confidence 8999997763 588999999988764
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=5.2e-18 Score=183.20 Aligned_cols=225 Identities=16% Similarity=0.110 Sum_probs=165.9
Q ss_pred eEEEEeecCCceEEEeCCCCcccceeeeccccccccCCC-CCCCHHHHHHHHHhhhhccccc----CCCCCChHHHHHHH
Q 005009 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPD-ATLQIELARDMGYTAARFGHVM----FPENVYEPALECAE 450 (719)
Q Consensus 376 p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lG-H~~hP~V~~Av~~q~~~~~~~~----~~~~~~~~~~~Lae 450 (719)
|.++.+++|. +++ .+|+ +|||+.++ .++| |. +|++.+|+.++++.+.... ......+...+|.+
T Consensus 23 ~~~~~~~~g~--~~~-~~g~----~~id~~~~---~~~~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~ 91 (384)
T 1bs0_A 23 RYPVAQGAGR--WLV-ADDR----QYLNFSSN---DYLGLSH-HPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEE 91 (384)
T ss_dssp CCCCSBCSSS--EEE-ETTE----EEEECSCC---CTTSGGG-CHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHH
T ss_pred cccccCCCCc--eEE-ECCc----eEEEeecc---CccCCCC-CHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHH
Confidence 3456666665 677 6888 99999986 3489 58 9999999999998754311 11124577889999
Q ss_pred HHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCC
Q 005009 451 LLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS 530 (719)
Q Consensus 451 ~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~ 530 (719)
+|+++++ .+.+++++||++|++.+++.. .++.++|.+...+|+.+..++...|..
T Consensus 92 ~la~~~g---~~~~i~~~sGt~a~~~~~~~~----------------------~~~gd~v~~~~~~~~~~~~~~~~~g~~ 146 (384)
T 1bs0_A 92 ELAEWLG---YSRALLFISGFAANQAVIAAM----------------------MAKEDRIAADRLSHASLLEAASLSPSQ 146 (384)
T ss_dssp HHHHHHT---CSEEEEESCHHHHHHHHHHHH----------------------CCTTCEEEEETTCCHHHHHHHHTSSSE
T ss_pred HHHHHhC---CCcEEEeCCcHHHHHHHHHHh----------------------CCCCcEEEEcccccHHHHHHHHHcCCC
Confidence 9999987 457899999999999999876 112356788889999877666554311
Q ss_pred CCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhc
Q 005009 531 PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQ 610 (719)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~ 610 (719)
.+.+| +.| .+.+++.+.+
T Consensus 147 ------------------------------~~~~~--------------~~d------------------~~~l~~~l~~ 164 (384)
T 1bs0_A 147 ------------------------------LRRFA--------------HND------------------VTHLARLLAS 164 (384)
T ss_dssp ------------------------------EEEEC--------------TTC------------------HHHHHHHHHS
T ss_pred ------------------------------EEEeC--------------CCC------------------HHHHHHHHHh
Confidence 01111 111 2456777763
Q ss_pred CCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEecccc-Cc-cccCccccccccCCCccee--e
Q 005009 611 NPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GF-WRLGVETTADLLGCVPDIA--C 686 (719)
Q Consensus 611 ~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqT-Gf-GRtG~~~a~e~~gv~PDIv--t 686 (719)
...+.++|++++. ++..|.+.+ +++|.++|++||+++|+||++. |+ +++|..+. +.++..||++ +
T Consensus 165 -----~~~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~-~~~~~~~di~~~s 233 (384)
T 1bs0_A 165 -----PCPGQQMVVTEGV-FSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSC-WLQKVKPELLVVT 233 (384)
T ss_dssp -----CCSSCEEEEEESB-CTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHH-HHTTCCCSEEEEE
T ss_pred -----cCCCCeEEEEeCC-CCCCCCccC----HHHHHHHHHHcCcEEEEECCcccceecCCCCchH-HhcCCCCcEEEee
Confidence 2224689999987 899999887 8999999999999999999994 64 66777544 5677789998 8
Q ss_pred ehhccCCCccchheeEeCHHHHhhhc
Q 005009 687 YGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 687 lgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
++|.+|. |.|++++++++++.+.
T Consensus 234 ~sK~~~~---~GG~~~~~~~~~~~l~ 256 (384)
T 1bs0_A 234 FGKGFGV---SGAAVLCSSTVADYLL 256 (384)
T ss_dssp SSSTTSS---CCEEEEECHHHHHHHH
T ss_pred ccchhhc---cCcEEEeCHHHHHHHH
Confidence 9999973 4477999999887664
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-17 Score=178.78 Aligned_cols=234 Identities=10% Similarity=-0.008 Sum_probs=162.3
Q ss_pred cCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccC--CCC
Q 005009 383 CGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVG--KGW 460 (719)
Q Consensus 383 ~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~--~~~ 460 (719)
+|.|+++||.+|+ +||||..| .+..+. +|+|.+|+.+++++..+... ....+...++++.|.+..+ -.
T Consensus 15 ~~~g~~~~d~~g~----~~i~~~~~---~~~~~~-~~~v~~a~~~~~~~~~~~y~-~~~~~l~~~la~~l~~~~g~~~~- 84 (391)
T 3dzz_A 15 RQGNSIKWGVLKE----KELPMWIA---EMDFKI-APEIMASMEEKLKVAAFGYE-SVPAEYYKAVADWEEIEHRARPK- 84 (391)
T ss_dssp CCTTBTTTTTCCT----TCEECCSS---CCSSCC-CHHHHHHHHHHHTTCCCCCB-CCCHHHHHHHHHHHHHHHSCCCC-
T ss_pred CCCCccceeccCC----Cceecccc---CCCCCC-CHHHHHHHHHHHhcCcCCCC-CCCHHHHHHHHHHHHHHhCCCCC-
Confidence 4555689999999 99999976 344457 99999999999987433221 1234556677778777554 11
Q ss_pred CCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCC
Q 005009 461 ASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPW 540 (719)
Q Consensus 461 ~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~ 540 (719)
.+.++|+++|++|++.+++... +. ..+|++...+||+....+.. .|..
T Consensus 85 ~~~i~~~~g~~~a~~~~~~~l~-----~~----------------gd~vl~~~~~~~~~~~~~~~-~g~~---------- 132 (391)
T 3dzz_A 85 EDWCVFASGVVPAISAMVRQFT-----SP----------------GDQILVQEPVYNMFYSVIEG-NGRR---------- 132 (391)
T ss_dssp GGGEEEESCHHHHHHHHHHHHS-----CT----------------TCEEEECSSCCHHHHHHHHH-TTCE----------
T ss_pred HHHEEECCCHHHHHHHHHHHhC-----CC----------------CCeEEECCCCcHHHHHHHHH-cCCE----------
Confidence 3689999999999999999871 11 24799999999985443322 2110
Q ss_pred ccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcE
Q 005009 541 YSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCI 620 (719)
Q Consensus 541 ~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~i 620 (719)
.+.+|..+ .+ ..+ .-| .+.+++.+.+ .++
T Consensus 133 --------------------~~~~~~~~------------~~--~~~--~~d--------~~~l~~~l~~-------~~~ 161 (391)
T 3dzz_A 133 --------------------VISSDLIY------------EN--SKY--SVN--------WADLEEKLAT-------PSV 161 (391)
T ss_dssp --------------------EEECCCEE------------ET--TEE--ECC--------HHHHHHHHTS-------TTE
T ss_pred --------------------EEEeeeee------------cC--Cce--eec--------HHHHHHHHhc-------cCc
Confidence 01111000 00 000 001 3567777752 356
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc-cccccccCC-Ccc----eeeehhccC-C
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGC-VPD----IACYGKLLT-G 693 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~-~~a~e~~gv-~PD----IvtlgK~Lg-g 693 (719)
.+|+++.. ++..|.+. |.+.+++|.++|++||+++|+||++++|++.|+ +.....++. .|| +.+++|.+| +
T Consensus 162 ~~v~i~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~ 239 (391)
T 3dzz_A 162 RMMVFCNP-HNPIGYAW-SEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLA 239 (391)
T ss_dssp EEEEEESS-BTTTTBCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCT
T ss_pred eEEEEECC-CCCCCccc-CHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhcccc
Confidence 77777775 88888765 577799999999999999999999999999886 444545443 388 557999998 7
Q ss_pred CccchheeEeC-HHHHhhhc
Q 005009 694 GVIPLAATLAT-NAVFDSFV 712 (719)
Q Consensus 694 G~~Plsavl~~-~~i~~~~~ 712 (719)
| +++|+++++ +++++.+.
T Consensus 240 G-~r~G~~~~~~~~~~~~~~ 258 (391)
T 3dzz_A 240 A-LHAACAIIPNPDLRARAE 258 (391)
T ss_dssp T-TCCEEEECCSHHHHHHHH
T ss_pred c-hhheEEEECCHHHHHHHH
Confidence 8 799999997 88887663
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-17 Score=180.54 Aligned_cols=225 Identities=14% Similarity=0.116 Sum_probs=163.9
Q ss_pred eEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCC-CCCHHHHHHHHHhhhhccccc----CCCCCChHHHHHHH
Q 005009 376 VTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDA-TLQIELARDMGYTAARFGHVM----FPENVYEPALECAE 450 (719)
Q Consensus 376 p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH-~~hP~V~~Av~~q~~~~~~~~----~~~~~~~~~~~Lae 450 (719)
|.++++++|. +++ .+|+ .||||.+|. ++|| . +|++.+|+.++++...+.. ......+...++++
T Consensus 27 ~~~~~~~~g~--~~~-~~g~----~~idl~~~~---~~~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~ 95 (398)
T 3a2b_A 27 FRPIQSKQDT--EVK-IDGR----RVLMFGSNS---YLGLTT-DTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEE 95 (398)
T ss_dssp SCCBCSCSSS--EEE-ETTE----EEEECSCSC---TTCGGG-CHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHH
T ss_pred eeeecCCCCc--eEE-ECCc----eEEEeeccc---ccCCCC-CHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHH
Confidence 3456676665 688 8898 999999863 3799 6 9999999999987754311 11234577889999
Q ss_pred HHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCC
Q 005009 451 LLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPS 530 (719)
Q Consensus 451 ~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~ 530 (719)
+|++..+ .+.++++++|++|++.+++.+. ++.+.|.+...+|+.+..++...|..
T Consensus 96 ~la~~~g---~~~v~~~~ggt~a~~~~~~~~~----------------------~~gd~V~~~~p~~~~~~~~~~~~g~~ 150 (398)
T 3a2b_A 96 KLSAYVG---KEAAILFSTGFQSNLGPLSCLM----------------------GRNDYILLDERDHASIIDGSRLSFSK 150 (398)
T ss_dssp HHHHHHT---CSEEEEESSHHHHHHHHHHHSS----------------------CTTCEEEEETTCCHHHHHHHHHSSSE
T ss_pred HHHHHhC---CCcEEEECCHHHHHHHHHHHHh----------------------CCCCEEEECCccCHHHHHHHHHcCCc
Confidence 9999887 3689999999999999998771 12356777788888776665544321
Q ss_pred CCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhc
Q 005009 531 PYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQ 610 (719)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~ 610 (719)
.+.+| ..| .+.+++.+.+
T Consensus 151 ------------------------------~~~v~--------------~~d------------------~~~l~~~l~~ 168 (398)
T 3a2b_A 151 ------------------------------VIKYG--------------HNN------------------MEDLRAKLSR 168 (398)
T ss_dssp ------------------------------EEEEC--------------TTC------------------HHHHHHHHHT
T ss_pred ------------------------------eEEeC--------------CCC------------------HHHHHHHHHh
Confidence 11111 111 2457777764
Q ss_pred CCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEecccc-C-ccccCccccccccCCC--ccee-
Q 005009 611 NPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-G-FWRLGVETTADLLGCV--PDIA- 685 (719)
Q Consensus 611 ~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqT-G-fGRtG~~~a~e~~gv~--PDIv- 685 (719)
. ..+++++|+++++ ++..|.+.+ +++|.++|++||+++|+||++. | +|++|..+ .+.+++. +|++
T Consensus 169 ~----~~~~~~~v~~~~~-~nptG~~~~----~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~-~~~~~~~~~~di~~ 238 (398)
T 3a2b_A 169 L----PEDSAKLICTDGI-FSMEGDIVN----LPELTSIANEFDAAVMVDDAHSLGVIGHKGAGT-ASHFGLNDDVDLIM 238 (398)
T ss_dssp S----CSSSCEEEEEESB-CTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCH-HHHHTCGGGCSEEE
T ss_pred h----ccCCceEEEEeCC-CCCCCCccC----HHHHHHHHHHcCcEEEEECCCcccccCCCCCch-HhhcCCCcCCeEEE
Confidence 1 1126889999998 898898876 9999999999999999999995 4 56666644 4556664 6898
Q ss_pred -eehhccCC-CccchheeEeCHHHHhhhc
Q 005009 686 -CYGKLLTG-GVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 686 -tlgK~Lgg-G~~Plsavl~~~~i~~~~~ 712 (719)
+++|.++. | |.+++++++++.+.
T Consensus 239 ~s~sK~~~~~G----G~~~~~~~~~~~l~ 263 (398)
T 3a2b_A 239 GTFSKSLASLG----GFVAGDADVIDFLK 263 (398)
T ss_dssp EESSSTTCSSC----EEEEECHHHHHHHH
T ss_pred ecccccccCCC----cEEEeCHHHHHHHH
Confidence 89999983 2 55889999887664
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.2e-17 Score=174.44 Aligned_cols=229 Identities=12% Similarity=0.048 Sum_probs=155.4
Q ss_pred cCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCC-CC
Q 005009 383 CGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-WA 461 (719)
Q Consensus 383 ~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~-~~ 461 (719)
+|.|+++||.+|+ +||||.+|. ..+ .. +|+|.+|+.+++....+.... ...+....+++.+.+..+.. ..
T Consensus 11 ~~~g~~~~d~~g~----~~idl~~~~--~~~-~~-~~~v~~a~~~~~~~~~~~y~~-~~~~lr~~la~~~~~~~~~~~~~ 81 (377)
T 3fdb_A 11 RARNTMKWTRYGQ----GVLPLWVAE--SDF-ST-CPAVLQAITDAVQREAFGYQP-DGSLLSQATAEFYADRYGYQARP 81 (377)
T ss_dssp HHTCCHHHHSSCT----TSEECCSSC--CCS-CC-CHHHHHHHHHHHHTTCCSSCC-SSCCHHHHHHHHHHHHHCCCCCG
T ss_pred cCCCCceeeccCC----CeeeecccC--CCC-CC-CHHHHHHHHHHHHcCCCCCCC-CCHHHHHHHHHHHHHHhCCCCCH
Confidence 4555689999999 999998863 334 47 999999999999863222111 22556667777776543211 13
Q ss_pred CeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCc
Q 005009 462 SRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWY 541 (719)
Q Consensus 462 ~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~ 541 (719)
++++|+++|++|++.+++... +. ..+|+....+||+....+... |..
T Consensus 82 ~~i~~t~g~~~a~~~~~~~~~-----~~----------------gd~vl~~~~~~~~~~~~~~~~-g~~----------- 128 (377)
T 3fdb_A 82 EWIFPIPDVVRGLYIAIDHFT-----PA----------------QSKVIVPTPAYPPFFHLLSAT-QRE----------- 128 (377)
T ss_dssp GGEEEESCHHHHHHHHHHHHS-----CT----------------TCCEEEEESCCTHHHHHHHHH-TCC-----------
T ss_pred HHEEEeCChHHHHHHHHHHhc-----CC----------------CCEEEEcCCCcHhHHHHHHHc-CCE-----------
Confidence 689999999999999999771 11 247999999999855432221 110
Q ss_pred cCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEE
Q 005009 542 SGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIG 621 (719)
Q Consensus 542 ~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iA 621 (719)
...++.+.. .| .+.+++.+.+ ...+
T Consensus 129 -----------------~~~~~~~~~-------------~d------------------~~~l~~~l~~-------~~~~ 153 (377)
T 3fdb_A 129 -----------------GIFIDATGG-------------IN------------------LHDVEKGFQA-------GARS 153 (377)
T ss_dssp -----------------EEEEECTTS-------------CC------------------HHHHHHHHHT-------TCCE
T ss_pred -----------------EEEccCCCC-------------CC------------------HHHHHHHhcc-------CCCE
Confidence 001111100 01 3567777763 2335
Q ss_pred EEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccC-----ccccccccCCCcceeeehhccC-CCc
Q 005009 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG-----VETTADLLGCVPDIACYGKLLT-GGV 695 (719)
Q Consensus 622 AvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG-----~~~a~e~~gv~PDIvtlgK~Lg-gG~ 695 (719)
.++..| +...|.+. |.+.+++|.++|++||+++|+||++++|+++| .++..+..+...++.+++|.+| +|
T Consensus 154 v~i~~p--~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G- 229 (377)
T 3fdb_A 154 ILLCNP--YNPLGMVF-APEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITAPSKAWNIAG- 229 (377)
T ss_dssp EEEESS--BTTTTBCC-CHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEECSTTTTTCGG-
T ss_pred EEEeCC--CCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEeChHhccCcc-
Confidence 555556 67778755 67789999999999999999999999999888 2333333445567779999996 67
Q ss_pred cchheeEe-CHHHHhhhc
Q 005009 696 IPLAATLA-TNAVFDSFV 712 (719)
Q Consensus 696 ~Plsavl~-~~~i~~~~~ 712 (719)
+++|++++ ++++++.+.
T Consensus 230 ~r~G~~~~~~~~~~~~~~ 247 (377)
T 3fdb_A 230 LKCAQIIFSNPSDAEHWQ 247 (377)
T ss_dssp GCCEEEECCSHHHHHHHH
T ss_pred hhheEEEeCCHHHHHHHH
Confidence 79996665 788887764
|
| >2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-16 Score=171.18 Aligned_cols=87 Identities=18% Similarity=0.156 Sum_probs=74.9
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCC-EEEEEcCCCChH-----------HHHHHHHHHHHh-----CCCcEE
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLP-GILVGDGRLGGI-----------SGTISAYESLKL-----RGYDVV 282 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~p-vilV~~~~~g~i-----------~~~~~~~~~l~~-----~~~~v~ 282 (719)
++|++||||+||++.|+ ++.+ ++|++.++.| +|||.+.++|++ ++++.+++.++. .+++|+
T Consensus 225 ~~d~vlVEGqGgl~~P~-~~~t-~~ll~g~~p~~vILv~~~~~g~i~~~~~~~~p~l~~~i~t~e~l~~~~~~~~~~~V~ 302 (349)
T 2obn_A 225 NYDILHIEGQGSLLHPG-STAT-LPLIRGSQPTQLVLVHRAGQTHNGNNPHVPIPPLPEVIRLYETVASGGGAFGTVPVV 302 (349)
T ss_dssp TCSEEEECCCCCTTSTT-CCTH-HHHHHHHCCSEEEEEEETTCCBCSSCTTSBCCCHHHHHHHHHHHHHTTTTSCCCCEE
T ss_pred CCCEEEEeCCCcccCcC-hHhH-HHHHHHcCCCeEEEEECCCCceECCCCccCCCCHHHHHHHHHHHHHhhccCCCCcEE
Confidence 49999999999999999 6555 8999999988 889999999999 999999999976 789999
Q ss_pred EEEEccCCC------CCHHHHHHhhcCCCcEEe-c
Q 005009 283 AVVFEDHGL------VNEVPLMSYLRNRVPVLV-L 310 (719)
Q Consensus 283 gvi~N~~~~------~~~~~l~~~~~~~~pvlg-l 310 (719)
||++|.... ++.+.+++.+ ++||++ +
T Consensus 303 Gi~lN~~~~~~~~~~~~~~~ie~~~--glPv~d~~ 335 (349)
T 2obn_A 303 GIALNTAHLDEYAAKEAIAHTIAET--GLPCTDVV 335 (349)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHH--CSCEECHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHH--CCCEEEEe
Confidence 999999832 3455566666 999998 5
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.4e-16 Score=168.60 Aligned_cols=237 Identities=10% Similarity=0.020 Sum_probs=157.9
Q ss_pred ecCCceEEEeCCCCccc-ceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccC--C
Q 005009 382 RCGENFSVYQDQKNKFI-GQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVG--K 458 (719)
Q Consensus 382 ~~G~g~~l~D~dG~~~~-~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~--~ 458 (719)
.+|.|+++||.+|+.++ ..+||+.++ .+-.+. +|+|.+|+.++++...+.. .....+...++++.|++..+ -
T Consensus 14 ~~~~g~~~~d~~~~~~~~~~~i~l~~~---~~~~~~-~~~v~~a~~~~~~~~~~~y-~~~~~~~~~~l~~~l~~~~g~~~ 88 (391)
T 4dq6_A 14 RSNNFSSKWSEMEKKYGTNDLLPMWVA---DMDFKA-APCIIDSLKNRLEQEIYGY-TTRPDSYNESIVNWLYRRHNWKI 88 (391)
T ss_dssp CTTTTBHHHHCHHHHHSCSCSEECCSS---SCSSCC-CHHHHHHHHHHHTTCCCCC-BCCCHHHHHHHHHHHHHHHCCCC
T ss_pred cccCCceeeeecccccCCCCceecccc---CCCCCC-CHHHHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHHHhCCCC
Confidence 35667789999986110 134898875 344566 8999999999998643322 12345677788888888765 2
Q ss_pred CCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCC
Q 005009 459 GWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQ 538 (719)
Q Consensus 459 ~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~ 538 (719)
. .++++|+++|++|++.+++.+. +. ..+|++...+||+....+... |..
T Consensus 89 ~-~~~v~~~~g~~~a~~~~~~~~~-----~~----------------gd~vl~~~~~~~~~~~~~~~~-g~~-------- 137 (391)
T 4dq6_A 89 K-SEWLIYSPGVIPAISLLINELT-----KA----------------NDKIMIQEPVYSPFNSVVKNN-NRE-------- 137 (391)
T ss_dssp C-GGGEEEESCHHHHHHHHHHHHS-----CT----------------TCEEEECSSCCTHHHHHHHHT-TCE--------
T ss_pred c-HHHeEEcCChHHHHHHHHHHhC-----CC----------------CCEEEEcCCCCHHHHHHHHHc-CCe--------
Confidence 2 4689999999999999999871 11 247999999999855433221 110
Q ss_pred CCccCCCcccCCCcccccCcceeecCcch-hhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCC
Q 005009 539 PWYSGRGLFLDPPTVFMYNSKWILSLPEW-LYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVS 617 (719)
Q Consensus 539 ~~~~~~~~~~~~p~~~~~~~~~~~~~P~~-~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~ 617 (719)
.+.+|.. +. -++ + .-| .+.+++.+. .
T Consensus 138 ----------------------~~~~~~~~~~----------~~~----~--~~d--------~~~l~~~l~-------~ 164 (391)
T 4dq6_A 138 ----------------------LIISPLQKLE----------NGN----Y--IMD--------YEDIENKIK-------D 164 (391)
T ss_dssp ----------------------EEECCCEECT----------TSC----E--ECC--------HHHHHHHCT-------T
T ss_pred ----------------------EEeeeeeecC----------CCc----e--Eee--------HHHHHHHhh-------c
Confidence 0111100 00 000 0 001 255666664 2
Q ss_pred CcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc-ccccc-----CCCcceeeehhcc
Q 005009 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLL-----GCVPDIACYGKLL 691 (719)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~-a~e~~-----gv~PDIvtlgK~L 691 (719)
+.+|+++.. +...|.+. |.+.+++|.++|++||++||+||++++|+++|+.+ ....+ +....+.+++|.+
T Consensus 165 --~~~v~i~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~ 240 (391)
T 4dq6_A 165 --VKLFILCNP-HNPVGRVW-TKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTF 240 (391)
T ss_dssp --EEEEEEESS-BTTTTBCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHH
T ss_pred --CCEEEEECC-CCCCCcCc-CHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhc
Confidence 667777765 78888755 67779999999999999999999999998888632 22222 2223355899999
Q ss_pred C-CCccchheeEeCH-HHHhhhc
Q 005009 692 T-GGVIPLAATLATN-AVFDSFV 712 (719)
Q Consensus 692 g-gG~~Plsavl~~~-~i~~~~~ 712 (719)
| +| +++|++++++ ++++.+.
T Consensus 241 g~~G-~r~G~~~~~~~~~~~~~~ 262 (391)
T 4dq6_A 241 NIAG-LQSSYVVLPDEKDYKLLD 262 (391)
T ss_dssp TCGG-GCCEEEECCSHHHHHHHH
T ss_pred cCcc-cceEEEEeCCHHHHHHHH
Confidence 8 78 7999999886 7777653
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=6.9e-16 Score=167.40 Aligned_cols=238 Identities=9% Similarity=-0.053 Sum_probs=153.5
Q ss_pred cCCceEEEeCCCCccc---ceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccC--
Q 005009 383 CGENFSVYQDQKNKFI---GQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVG-- 457 (719)
Q Consensus 383 ~G~g~~l~D~dG~~~~---~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~-- 457 (719)
+|.|+++||.+|+.++ +.++||.++. ..++ . +|+|.+|+.++++...... .....+....+++.+.+..+
T Consensus 12 ~~~g~~~~d~~g~~~g~~~~~~i~l~~~~--~~~~-~-~~~v~~a~~~~~~~~~~~y-~~~~~~l~~~la~~l~~~~g~~ 86 (399)
T 1c7n_A 12 KNLGSLKWDLMYSQNPEVGNEVVPLSVAD--MEFK-N-PPELIEGLKKYLDETVLGY-TGPTEEYKKTVKKWMKDRHQWD 86 (399)
T ss_dssp TTTTBHHHHHHHHHCTTCCTTCCCCCSSS--CSSC-C-CHHHHHHHHHHHHHCCCSS-BCCCHHHHHHHHHHHHHHHCCC
T ss_pred cCCCccccccchhhccccCCCceeeeecC--CCCC-C-CHHHHHHHHHHHhcCCCCC-CCCcHHHHHHHHHHHHHHhCCC
Confidence 4666789999984222 2789997754 3355 4 8999999999987532211 11133444455555544333
Q ss_pred CCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCC
Q 005009 458 KGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQ 537 (719)
Q Consensus 458 ~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~ 537 (719)
.+ .+.++|+++|++|++.+++... .. ..+|++...+|||....+.. .|..
T Consensus 87 ~~-~~~v~~t~g~~~a~~~~~~~l~-----~~----------------gd~vl~~~p~~~~~~~~~~~-~g~~------- 136 (399)
T 1c7n_A 87 IQ-TDWIINTAGVVPAVFNAVREFT-----KP----------------GDGVIIITPVYYPFFMAIKN-QERK------- 136 (399)
T ss_dssp CC-GGGEEEESSHHHHHHHHHHHHC-----CT----------------TCEEEECSSCCTHHHHHHHT-TTCE-------
T ss_pred CC-hhhEEEcCCHHHHHHHHHHHhc-----CC----------------CCEEEEcCCCcHhHHHHHHH-cCCE-------
Confidence 11 3689999999999999999761 11 24799999999996544322 1110
Q ss_pred CCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCC
Q 005009 538 QPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVS 617 (719)
Q Consensus 538 ~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~ 617 (719)
.+.+|... .+ ..| ..| .+.+++.+.+
T Consensus 137 -----------------------~~~~~~~~------------~~--g~~--~~d--------~~~l~~~l~~------- 162 (399)
T 1c7n_A 137 -----------------------IIECELLE------------KD--GYY--TID--------FQKLEKLSKD------- 162 (399)
T ss_dssp -----------------------EEECCCEE------------ET--TEE--ECC--------HHHHHHHHTC-------
T ss_pred -----------------------EEeccccc------------CC--CCE--EEc--------HHHHHHHhcc-------
Confidence 01111000 00 000 001 3567777752
Q ss_pred CcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc-ccccccc-----CCCcceeeehhcc
Q 005009 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLL-----GCVPDIACYGKLL 691 (719)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~-~~a~e~~-----gv~PDIvtlgK~L 691 (719)
.++.+|++... +...|.+ .|++++++|.++|++||++||+||++++|++.|. ......+ +...++.+++|.+
T Consensus 163 ~~~~~v~~~~~-~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~ 240 (399)
T 1c7n_A 163 KNNKALLFCSP-HNPVGRV-WKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTF 240 (399)
T ss_dssp TTEEEEEEESS-BTTTTBC-CCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHH
T ss_pred CCCcEEEEcCC-CCCCCcC-cCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhhc
Confidence 35667777654 7777875 4788999999999999999999999999988875 2233222 3334456899999
Q ss_pred C-CCccchheeEeC-HHHHhhhc
Q 005009 692 T-GGVIPLAATLAT-NAVFDSFV 712 (719)
Q Consensus 692 g-gG~~Plsavl~~-~~i~~~~~ 712 (719)
| +| +++|+++++ +++++.+.
T Consensus 241 ~~~G-~r~G~~~~~~~~~~~~l~ 262 (399)
T 1c7n_A 241 NIAG-MGMSNIIIKNPDIRERFT 262 (399)
T ss_dssp TCGG-GCCEEEECCCHHHHHHHH
T ss_pred cccc-hheEEEEECCHHHHHHHH
Confidence 8 78 799999997 66877653
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.9e-15 Score=162.11 Aligned_cols=237 Identities=9% Similarity=-0.010 Sum_probs=142.2
Q ss_pred ecCCceEEEeCCCCcc-cceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCCh-HHHHHHHHHHhccC--
Q 005009 382 RCGENFSVYQDQKNKF-IGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYE-PALECAELLLQGVG-- 457 (719)
Q Consensus 382 ~~G~g~~l~D~dG~~~-~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~-~~~~Lae~L~~~~~-- 457 (719)
.+|.|+++||.+|+.+ .+++|||.++. ..+| . +|+|.+|+.++++...... .....+ ...++++.+.+..+
T Consensus 10 ~~~~~~~~~d~~~~~~~~~~~i~l~~~~--~~~~-~-~~~v~~a~~~~~~~~~~~y-~~~~~~~lr~~la~~l~~~~g~~ 84 (390)
T 1d2f_A 10 RHGTWCTQWDYVADRFGTADLLPFTISD--MDFA-T-APCIIEALNQRLMHGVFGY-SRWKNDEFLAAIAHWFSTQHYTA 84 (390)
T ss_dssp --------------------CEECCSSS--CSSC-C-CHHHHHHHHHHHTTCCCCC-CCSCCHHHHHHHHHHHHHHSCCC
T ss_pred ccCCCccchhhhccccCCCCeeEeeecC--CCCC-C-CHHHHHHHHHHHhCCCCCC-CCCChHHHHHHHHHHHHHhcCCC
Confidence 3566778999999621 12589997654 3567 5 8999999999987532211 112344 55666666655433
Q ss_pred CCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCC
Q 005009 458 KGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQ 537 (719)
Q Consensus 458 ~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~ 537 (719)
.. .+.++|+++|++|++.+++... .. ..+|++...+|||....+.. .|..
T Consensus 85 ~~-~~~v~~t~g~~~al~~~~~~l~-----~~----------------gd~vl~~~p~y~~~~~~~~~-~g~~------- 134 (390)
T 1d2f_A 85 ID-SQTVVYGPSVIYMVSELIRQWS-----ET----------------GEGVVIHTPAYDAFYKAIEG-NQRT------- 134 (390)
T ss_dssp CC-GGGEEEESCHHHHHHHHHHHSS-----CT----------------TCEEEEEESCCHHHHHHHHH-TTCE-------
T ss_pred CC-HHHEEEcCCHHHHHHHHHHHhc-----CC----------------CCEEEEcCCCcHHHHHHHHH-CCCE-------
Confidence 11 3689999999999999999761 11 24799999999996544322 1110
Q ss_pred CCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCC
Q 005009 538 QPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVS 617 (719)
Q Consensus 538 ~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~ 617 (719)
...++... .+ ..| ..| .+.+++.+.+
T Consensus 135 ---------------------~~~v~~~~--------------~~--~~~--~~d--------~~~l~~~l~~------- 160 (390)
T 1d2f_A 135 ---------------------VMPVALEK--------------QA--DGW--FCD--------MGKLEAVLAK------- 160 (390)
T ss_dssp ---------------------EEEEECEE--------------CS--SSE--ECC--------HHHHHHHHTS-------
T ss_pred ---------------------EEEeeccc--------------CC--Ccc--ccC--------HHHHHHHhcc-------
Confidence 00111100 00 000 001 2567777752
Q ss_pred CcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCc---c-eeeehhccC-
Q 005009 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVP---D-IACYGKLLT- 692 (719)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~P---D-IvtlgK~Lg- 692 (719)
.++.+|++... +...|.+. |.+++++|.++|++||+++|+||++++|+++|+.+.. ...+.+ | +.+++|.+|
T Consensus 161 ~~~~~v~l~~p-~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~-~~~~~~~~~d~~~s~sK~~~~ 237 (390)
T 1d2f_A 161 PECKIMLLCSP-QNPTGKVW-TCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIP-WSNVARGDWALLTSGSKSFNI 237 (390)
T ss_dssp TTEEEEEEESS-CTTTCCCC-CTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCC-GGGTCCSSEEEEECSHHHHTC
T ss_pred CCCeEEEEeCC-CCCCCcCc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcC-HHHcchhhHhhccCccHhhcc
Confidence 25666665443 67778764 6789999999999999999999999999888864321 112222 3 889999998
Q ss_pred CCccchheeEeC-HHHHhhh
Q 005009 693 GGVIPLAATLAT-NAVFDSF 711 (719)
Q Consensus 693 gG~~Plsavl~~-~~i~~~~ 711 (719)
+| +++|+++++ +++++.+
T Consensus 238 ~G-~r~G~~~~~~~~~~~~~ 256 (390)
T 1d2f_A 238 PA-LTGAYGIIENSSSRDAY 256 (390)
T ss_dssp GG-GCCEEEEECSHHHHHHH
T ss_pred cC-hhheEEEECCHHHHHHH
Confidence 88 799999985 7777655
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.6e-15 Score=164.85 Aligned_cols=228 Identities=13% Similarity=0.085 Sum_probs=149.7
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhccc--ccCC--CCCChHHHHHHHHHHhccCCC-CCC-eEEEeCChHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH--VMFP--ENVYEPALECAELLLQGVGKG-WAS-RAYFSDNGSTA 473 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~--~~~~--~~~~~~~~~Lae~L~~~~~~~-~~~-rv~f~~SGsEA 473 (719)
.+|||.+|.. .+| . +|+|.+|+.++++.... ..+. ....+...++++.+.+..+.+ ..+ .++|+++|++|
T Consensus 38 ~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a 113 (429)
T 1yiz_A 38 KPLNLGQGFP--DYH-A-PKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEA 113 (429)
T ss_dssp CCEECCSSSC--SSC-C-CHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHH
T ss_pred CEEEecCCCC--CCC-C-CHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHH
Confidence 6899988764 567 6 89999999999976311 1111 112344455565555433411 135 89999999999
Q ss_pred HHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcc
Q 005009 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (719)
Q Consensus 474 ~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~ 553 (719)
++.+++.+. .. ..+|++...+|||....+ ...|...
T Consensus 114 ~~~~~~~~~-----~~----------------gd~Vl~~~p~y~~~~~~~-~~~g~~~---------------------- 149 (429)
T 1yiz_A 114 LYATIQGHV-----DE----------------GDEVIIIEPFFDCYEPMV-KAAGGIP---------------------- 149 (429)
T ss_dssp HHHHHHHHC-----CT----------------TCEEEEEESCCTTHHHHH-HHTTCEE----------------------
T ss_pred HHHHHHHhc-----CC----------------CCEEEEcCCCchhHHHHH-HHcCCEE----------------------
Confidence 999999871 11 247999999999965432 2222100
Q ss_pred cccCcceeecCcch-hhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 005009 554 FMYNSKWILSLPEW-LYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (719)
Q Consensus 554 ~~~~~~~~~~~P~~-~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~ 632 (719)
..++.... ... . ....+ + ..| .+.+++.+. .++++|+++.. ++.
T Consensus 150 ------~~~~~~~~~~~~---~---~~~~~----~--~~d--------~~~l~~~l~--------~~~~~v~~~~p-~np 194 (429)
T 1yiz_A 150 ------RFIPLKPNKTGG---T---ISSAD----W--VLD--------NNELEALFN--------EKTKMIIINTP-HNP 194 (429)
T ss_dssp ------EEEECBCCCSSS---S---EEGGG----C--BCC--------HHHHHHHCC--------TTEEEEEEESS-CTT
T ss_pred ------EEEeCCcccccc---c---ccccC----c--ccC--------HHHHHHHhc--------cCceEEEECCC-CCC
Confidence 01111000 000 0 00000 0 001 255666653 36788998987 888
Q ss_pred CccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc----cccc-ccCCCcceeeehhccC-CCccchheeEeCHH
Q 005009 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE----TTAD-LLGCVPDIACYGKLLT-GGVIPLAATLATNA 706 (719)
Q Consensus 633 gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~----~a~e-~~gv~PDIvtlgK~Lg-gG~~Plsavl~~~~ 706 (719)
.|.+. |++++++|.++|++||+++|+||++++|+++|.. .... .++..+++.+++|.+| +| +++|+++++++
T Consensus 195 tG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G-~r~G~~~~~~~ 272 (429)
T 1yiz_A 195 LGKVM-DRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTG-WKIGWAYGPEA 272 (429)
T ss_dssp TCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGG-GCCEEEESCHH
T ss_pred CCccC-CHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccCCCC-cceEEEEeCHH
Confidence 88765 6899999999999999999999999999887752 2221 3455667779999998 78 79999999999
Q ss_pred HHhhhc
Q 005009 707 VFDSFV 712 (719)
Q Consensus 707 i~~~~~ 712 (719)
+++.+.
T Consensus 273 ~~~~l~ 278 (429)
T 1yiz_A 273 LLKNLQ 278 (429)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=4.6e-15 Score=161.20 Aligned_cols=213 Identities=12% Similarity=0.018 Sum_probs=145.8
Q ss_pred CCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhccccc---CCC-CCChHHHHHHHHHHhccCCCCCCeEEEeC
Q 005009 393 QKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM---FPE-NVYEPALECAELLLQGVGKGWASRAYFSD 468 (719)
Q Consensus 393 dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~---~~~-~~~~~~~~Lae~L~~~~~~~~~~rv~f~~ 468 (719)
||+ +|+|+.+ +.++|++.+|+|.+|+.++++++.... ... ...+...++.++|+++++. +..++++
T Consensus 44 ~g~----~~i~~~~---~~~~~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~---~~~i~~~ 113 (401)
T 2bwn_A 44 GKQ----DITVWCG---NDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQK---EAALVFS 113 (401)
T ss_dssp CEE----EEEECSC---SCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTC---SEEEEES
T ss_pred CCC----cEEEeeC---CCcccCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCC---CcEEEEC
Confidence 677 9999988 456777447999999999998754321 011 2356788999999999874 4555569
Q ss_pred ChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCccc
Q 005009 469 NGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548 (719)
Q Consensus 469 SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~ 548 (719)
||++|++.+++++.+. ..| +.|.....+|+....++...|..
T Consensus 114 sG~~a~~~~~~~l~~~---~~g-----------------d~Vl~~~~~~~~~~~~~~~~g~~------------------ 155 (401)
T 2bwn_A 114 SAYNANDATLSTLRVL---FPG-----------------LIIYSDSLNHASMIEGIKRNAGP------------------ 155 (401)
T ss_dssp CHHHHHHHHHHHHHHH---STT-----------------CEEEEETTCCHHHHHHHHHSCCC------------------
T ss_pred CcHHHHHHHHHHHhcC---CCC-----------------CEEEECchhhHHHHHHHHHcCCe------------------
Confidence 9999999999875221 111 33445556666555444332210
Q ss_pred CCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccc
Q 005009 549 DPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPV 628 (719)
Q Consensus 549 ~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPV 628 (719)
.+.+| ++| .+.+++.+... ..+++++|+++++
T Consensus 156 ------------~~~v~--------------~~d------------------~~~le~~l~~~----~~~~~~~v~~~~~ 187 (401)
T 2bwn_A 156 ------------KRIFR--------------HND------------------VAHLRELIAAD----DPAAPKLIAFESV 187 (401)
T ss_dssp ------------EEEEC--------------TTC------------------HHHHHHHHHHS----CTTSCEEEEEESB
T ss_pred ------------EEEEc--------------CCC------------------HHHHHHHHHhh----ccCCceEEEEecC
Confidence 01111 111 24566666641 2246789999997
Q ss_pred cccCCccccCCHHHHHHHHHHHHhcCCcEEEecccc-C-ccccCccccccccCC--Cccee--eehhccC--CCccchhe
Q 005009 629 VHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-G-FWRLGVETTADLLGC--VPDIA--CYGKLLT--GGVIPLAA 700 (719)
Q Consensus 629 iqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqT-G-fGRtG~~~a~e~~gv--~PDIv--tlgK~Lg--gG~~Plsa 700 (719)
++..|.+.+ +++|.++|++||+++|+||+|+ | ||++|..+. ..+++ .+|++ +++|++| || .
T Consensus 188 -~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~-~~~~~~~~~~i~~~s~sK~~~~~GG-----~ 256 (401)
T 2bwn_A 188 -YSMDGDFGP----IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVA-ERDGLMHRIDIFNGTLAKAYGVFGG-----Y 256 (401)
T ss_dssp -CTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHH-HHHTCGGGCSEEEEESSSTTCSCCE-----E
T ss_pred -cCCCCCcCC----HHHHHHHHHHcCCEEEEeccccccccCCCCceee-eccCccccCcEEEeechhhccCCCC-----E
Confidence 999999887 8999999999999999999998 4 688887665 55665 34655 8999998 44 4
Q ss_pred eEeCHHHHhhhc
Q 005009 701 TLATNAVFDSFV 712 (719)
Q Consensus 701 vl~~~~i~~~~~ 712 (719)
+++++++.+.+.
T Consensus 257 ~~~~~~~~~~l~ 268 (401)
T 2bwn_A 257 IAASARMVDAVR 268 (401)
T ss_dssp EEECHHHHHHHH
T ss_pred EecCHHHHHHHH
Confidence 778888877653
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=4e-17 Score=177.40 Aligned_cols=238 Identities=13% Similarity=0.072 Sum_probs=154.7
Q ss_pred ecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccC--CC
Q 005009 382 RCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVG--KG 459 (719)
Q Consensus 382 ~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~--~~ 459 (719)
.+|.|+++||.+|+ ...+|||..|.. .++ . +|++.+|+.++++...+.... ...+...++++.|.+..+ .+
T Consensus 16 ~~~~g~~~~d~~g~--~~~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~y~~-~~~~l~~~la~~l~~~~g~~~~ 88 (392)
T 3b1d_A 16 RLSHHTYKWKETET--DPQLLPAWIADM--DFE-V-MPEVKQAIHDYAEQLVYGYTY-ASDELLQAVLDWEKSEHQYSFD 88 (392)
Confidence 34667799999986 347999977643 344 3 799999999998753222111 133344455555544333 11
Q ss_pred CCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCC
Q 005009 460 WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQP 539 (719)
Q Consensus 460 ~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~ 539 (719)
.++++++++|++|++.+++.+. .. ..+|+....+||+....+.... ..
T Consensus 89 -~~~v~~~~g~~~a~~~~~~~~~-----~~----------------gd~vl~~~p~~~~~~~~~~~~g-~~--------- 136 (392)
T 3b1d_A 89 -KEDIVFVEGVVPAISIAIQAFT-----KE----------------GEAVLINSPVYPPFARSVRLNN-RK--------- 136 (392)
Confidence 3679999999999999999872 11 2478999999999654332211 00
Q ss_pred CccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCc
Q 005009 540 WYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGC 619 (719)
Q Consensus 540 ~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~ 619 (719)
.+.+| +++.+..|. ...+.+++.+.+ .+
T Consensus 137 ---------------------~~~~~--------------~~~~~g~~~----------~d~~~l~~~l~~-------~~ 164 (392)
T 3b1d_A 137 ---------------------LVSNS--------------LKEENGLFQ----------IDFEQLENDIVE-------ND 164 (392)
Confidence 00011 000000000 002445555531 24
Q ss_pred EEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc----cccccc--cCCCcceeeehhccC-
Q 005009 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV----ETTADL--LGCVPDIACYGKLLT- 692 (719)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~----~~a~e~--~gv~PDIvtlgK~Lg- 692 (719)
+.+|+++.. +...|.+ .+.+++++|.++|++||+++|+||++++|++.|. ++.... .+..+++.+++|++|
T Consensus 165 ~~~v~~~~~-~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~ 242 (392)
T 3b1d_A 165 VKLYLLCNP-HNPGGRV-WEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNI 242 (392)
Confidence 567777665 7777875 5678999999999999999999999999988773 344333 556677889999998
Q ss_pred CCccchheeEeCH-HHHhhhcC
Q 005009 693 GGVIPLAATLATN-AVFDSFVG 713 (719)
Q Consensus 693 gG~~Plsavl~~~-~i~~~~~~ 713 (719)
+| +++|++++++ ++++.+..
T Consensus 243 ~G-~r~G~~~~~~~~~~~~~~~ 263 (392)
T 3b1d_A 243 AG-TKNSYAIIENPTLCAQFKH 263 (392)
Confidence 88 7999999875 48776643
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.1e-15 Score=160.93 Aligned_cols=227 Identities=11% Similarity=0.048 Sum_probs=147.1
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhccccc-CC--CCCChHHHHHHHHHHhccCC-CCCCeEEEeCChHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM-FP--ENVYEPALECAELLLQGVGK-GWASRAYFSDNGSTAIE 475 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~-~~--~~~~~~~~~Lae~L~~~~~~-~~~~rv~f~~SGsEA~E 475 (719)
.+|||.+|... ..||. +|+|.+|+.+++++..... .. ....+...++++.+.+..+. -..+.++|+++|++|++
T Consensus 35 ~~idl~~g~~~-~~~~~-~~~v~~a~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~ 112 (407)
T 2zc0_A 35 KLISLAAGDPD-PELIP-RAVLGEIAKEVLEKEPKSVMYTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGALD 112 (407)
T ss_dssp CCEECCSCCCC-TTTSC-HHHHHHHHHHHHHHCGGGGSCCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHH
T ss_pred ceEeCCCCCCC-chhCC-HHHHHHHHHHHHhhccccccCCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHHH
Confidence 89999988754 45899 9999999999988643111 11 11233344444444332241 01368999999999999
Q ss_pred HHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccc
Q 005009 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (719)
Q Consensus 476 ~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (719)
.+++.+. .. ..+|++...+|||.... +...|..
T Consensus 113 ~~~~~~~-----~~----------------gd~vl~~~p~~~~~~~~-~~~~g~~------------------------- 145 (407)
T 2zc0_A 113 LLGRVLI-----DP----------------GDVVITENPSYINTLLA-FEQLGAK------------------------- 145 (407)
T ss_dssp HHHHHHC-----CT----------------TCEEEEEESCCHHHHHH-HHTTTCE-------------------------
T ss_pred HHHHHhc-----CC----------------CCEEEEeCCChHHHHHH-HHHcCCE-------------------------
Confidence 9999882 11 24799999999985432 2222110
Q ss_pred cCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCcc
Q 005009 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (719)
Q Consensus 556 ~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~ 635 (719)
...++.... ..| .+.+++.+.+.. ....++.+|++.|..+...|.
T Consensus 146 ---~~~v~~~~~------------~~d------------------~~~l~~~l~~~~--~~~~~~~~v~~~~~~~nptG~ 190 (407)
T 2zc0_A 146 ---IEGVPVDND------------GMR------------------VDLLEEKIKELK--AKGQKVKLIYTIPTGQNPMGV 190 (407)
T ss_dssp ---EEEEEEETT------------EEC------------------HHHHHHHHHHHH--HTTCCEEEEEECCSSCTTTCC
T ss_pred ---EEEcccCCC------------CCC------------------HHHHHHHHHhhh--cccCCceEEEECCCCCCCCCc
Confidence 001111000 001 245666664100 012367777544433777887
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc-ccccccC---CCcceeeehhccCCCccchheeEeCHHHHhhh
Q 005009 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLG---CVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 636 ~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~-~a~e~~g---v~PDIvtlgK~LggG~~Plsavl~~~~i~~~~ 711 (719)
+ .|.+++++|.++|++||+++|+||++++|.+.|.. .....++ ...++.+++|.+|.| +++|++++++++++.+
T Consensus 191 ~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G-~r~G~~~~~~~~~~~~ 268 (407)
T 2zc0_A 191 T-MSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKVLGTG-FRIGWIIAEGEILKKV 268 (407)
T ss_dssp C-CCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTTTTCTT-SCCEEEECCHHHHHHH
T ss_pred C-CCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccccccCCC-cceEEEecCHHHHHHH
Confidence 5 47899999999999999999999999998777763 3333333 234566899999998 7999999999998876
Q ss_pred c
Q 005009 712 V 712 (719)
Q Consensus 712 ~ 712 (719)
.
T Consensus 269 ~ 269 (407)
T 2zc0_A 269 L 269 (407)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.6e-15 Score=160.89 Aligned_cols=245 Identities=11% Similarity=-0.014 Sum_probs=152.0
Q ss_pred EEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccc--cCCCCCChHHHHHHHHHHhc
Q 005009 378 VIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHV--MFPENVYEPALECAELLLQG 455 (719)
Q Consensus 378 vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~--~~~~~~~~~~~~Lae~L~~~ 455 (719)
++...+|. ++ +.+|++...++|||.+|..+ ++..+|+|++|+.++++..... .......+...+++++|++.
T Consensus 21 ~~~~~~~~--~~-~~~~~~~~~~~id~~~g~~~---~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~ 94 (407)
T 3nra_A 21 VRQSAAGL--EA-LIRGAPIEGRPVDFSHGDVD---AHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAF 94 (407)
T ss_dssp ------CC--TT-TCCSCCCCSCCEETTSCCTT---TSCCCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHhhhh--HH-HhhcCCCCCceeeecCcCCC---CCCCcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHH
Confidence 44555553 23 44555111149999886433 4333899999999998753221 11223456778889999887
Q ss_pred cCCCC--CCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCC
Q 005009 456 VGKGW--ASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (719)
Q Consensus 456 ~~~~~--~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~ 533 (719)
.+... -+.++|+++|++|++.+++... .. ..+|++...+||+....+ ...|..
T Consensus 95 ~g~~~~~~~~i~~~~g~~~a~~~~~~~l~-----~~----------------gd~vl~~~~~~~~~~~~~-~~~g~~--- 149 (407)
T 3nra_A 95 TGAPVDARDGLIITPGTQGALFLAVAATV-----AR----------------GDKVAIVQPDYFANRKLV-EFFEGE--- 149 (407)
T ss_dssp HTSCCCTTTSEEEESHHHHHHHHHHHTTC-----CT----------------TCEEEEEESCCTHHHHHH-HHTTCE---
T ss_pred hCCCCCCCCcEEEeCCcHHHHHHHHHHhC-----CC----------------CCEEEEcCCcccchHHHH-HHcCCE---
Confidence 66320 1589999999999999998761 11 247888888888744332 222211
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
.+.+|..+.. ..+. .+ .-| .+.+++.+.+
T Consensus 150 ---------------------------~~~~~~~~~~---------~~~~--~~--~~d--------~~~l~~~l~~--- 178 (407)
T 3nra_A 150 ---------------------------MVPVQLDYVS---------ADET--RA--GLD--------LTGLEEAFKA--- 178 (407)
T ss_dssp ---------------------------EEEEEBCCCS---------SCCS--SC--CBC--------HHHHHHHHHT---
T ss_pred ---------------------------EEEeeccccc---------ccCc--CC--CcC--------HHHHHHHHhh---
Confidence 0111100000 0000 00 001 3567777762
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc-ccccc-----CCCcceeee
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLL-----GCVPDIACY 687 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~-a~e~~-----gv~PDIvtl 687 (719)
+..+|++... +...|.+. |.+++++|.++|++||+++|+||++++|++.|+.+ ....+ +...++.++
T Consensus 179 -----~~~~v~~~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~ 251 (407)
T 3nra_A 179 -----GARVFLFSNP-NNPAGVVY-SAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGP 251 (407)
T ss_dssp -----TCCEEEEESS-CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECS
T ss_pred -----CCcEEEEcCC-CCCCCccc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCc
Confidence 2334444443 67778755 78899999999999999999999999998888744 33333 233446689
Q ss_pred hhccC-CCccchheeEeCHHHHhhhc
Q 005009 688 GKLLT-GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 688 gK~Lg-gG~~Plsavl~~~~i~~~~~ 712 (719)
+|.+| .| +++|++++++++++.+.
T Consensus 252 sK~~g~~G-~r~G~~~~~~~~~~~l~ 276 (407)
T 3nra_A 252 SKTESLSG-YRLGVAFGSRAIIARME 276 (407)
T ss_dssp SSTTCCGG-GCCEEEEECHHHHHHHH
T ss_pred ccccCCCe-eeEEEEEcCHHHHHHHH
Confidence 99998 78 79999999999987764
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.9e-14 Score=154.96 Aligned_cols=216 Identities=12% Similarity=0.018 Sum_probs=143.9
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCC-hHHHHHHHHHHhcc----CCC-CCC-eEEEeCChHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVY-EPALECAELLLQGV----GKG-WAS-RAYFSDNGST 472 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~-~~~~~Lae~L~~~~----~~~-~~~-rv~f~~SGsE 472 (719)
++|||.+|.. .+| . +|++.+|+.+++++.... .+.. ....+|.+.|++++ +.+ ..+ .++|+++|++
T Consensus 26 ~~idl~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~---~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~ 98 (376)
T 2dou_A 26 GLIDLSIGST--DLP-P-PEAPLKALAEALNDPTTY---GYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQE 98 (376)
T ss_dssp CCEECSSCCC--CCC-C-CHHHHHHHHHHTTCGGGS---SCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHH
T ss_pred CEEeccCCCC--CCC-C-CHHHHHHHHHHHhCCCcC---CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHH
Confidence 8999988764 567 4 899999999998653111 2233 24556666666654 532 013 8999999999
Q ss_pred HHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCc
Q 005009 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (719)
Q Consensus 473 A~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (719)
|++.+++... .. ..+|+....+||+....+... |..
T Consensus 99 a~~~~~~~l~-----~~----------------gd~vl~~~p~y~~~~~~~~~~-g~~---------------------- 134 (376)
T 2dou_A 99 GLAHLLLALT-----EP----------------EDLLLLPEVAYPSYFGAARVA-SLR---------------------- 134 (376)
T ss_dssp HHHHHHHHHC-----CT----------------TCEEEEESSCCHHHHHHHHHT-TCE----------------------
T ss_pred HHHHHHHHhc-----CC----------------CCEEEECCCCcHhHHHHHHHc-CCE----------------------
Confidence 9999998761 11 247999999999965443221 110
Q ss_pred ccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 005009 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (719)
Q Consensus 553 ~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~ 632 (719)
...++.++.+. .|. +.+++.+. .++.+|+++.. +..
T Consensus 135 ------~~~~~~~~~~~-----------~d~------------------~~l~~~l~--------~~~~~v~l~~p-~np 170 (376)
T 2dou_A 135 ------TFLIPLREDGL-----------ADL------------------KAVPEGVW--------REAKVLLLNYP-NNP 170 (376)
T ss_dssp ------EEEECBCTTSS-----------BCG------------------GGSCHHHH--------HHEEEEEECSS-CTT
T ss_pred ------EEEeeCCCCCC-----------CCH------------------HHHHHhhc--------cCceEEEECCC-CCC
Confidence 01111111110 111 22334443 24677777744 677
Q ss_pred CccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc-cccc---cCCCcceeeehhccC-CCccchheeEeCHHH
Q 005009 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADL---LGCVPDIACYGKLLT-GGVIPLAATLATNAV 707 (719)
Q Consensus 633 gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~-a~e~---~gv~PDIvtlgK~Lg-gG~~Plsavl~~~~i 707 (719)
.|.+ .|.+++++|.++|++||+++|+||++++|++.|+.. ..+. .+...++.+++|.+| +| +++|++++++++
T Consensus 171 tG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~ 248 (376)
T 2dou_A 171 TGAV-ADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAG-FRLGFALGSEEA 248 (376)
T ss_dssp TCCC-CCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGG-GCCEEEEECHHH
T ss_pred cCcc-CCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCChh-heeEEEecCHHH
Confidence 7876 478999999999999999999999999998777532 1222 233455668999998 78 799999999999
Q ss_pred Hhhhc
Q 005009 708 FDSFV 712 (719)
Q Consensus 708 ~~~~~ 712 (719)
++.+.
T Consensus 249 ~~~l~ 253 (376)
T 2dou_A 249 LARLE 253 (376)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.4e-14 Score=153.73 Aligned_cols=217 Identities=12% Similarity=0.090 Sum_probs=143.7
Q ss_pred EeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCC
Q 005009 390 YQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDN 469 (719)
Q Consensus 390 ~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~S 469 (719)
++.+|+ ++|||.++. ..+| . +|++.+|+.++++.... +......+|.++|+++.+.+ .+.++|+++
T Consensus 19 ~~~~~~----~~idl~~~~--~~~~-~-~~~v~~a~~~~~~~~~~-----y~~~~~~~l~~~la~~~~~~-~~~v~~~~g 84 (364)
T 1lc5_A 19 LGISPD----QLLDFSANI--NPLG-M-PVSVKRALIDNLDCIER-----YPDADYFHLHQALARHHQVP-ASWILAGNG 84 (364)
T ss_dssp HTSCGG----GSEECSSCC--CTTC-C-CHHHHHHHHHTGGGGGS-----CCCTTCHHHHHHHHHHHTSC-GGGEEEESS
T ss_pred cCCCcc----ceEEecccc--CCCC-C-CHHHHHHHHHHHHHhhc-----CCCCCHHHHHHHHHHHHCcC-HHHEEECCC
Confidence 345777 899998876 3577 6 89999999999876322 12223467888888877632 368999999
Q ss_pred hHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccC
Q 005009 470 GSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLD 549 (719)
Q Consensus 470 GsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~ 549 (719)
|++|++.+++.+ . | .+|++...+||+....+... |..
T Consensus 85 ~~~al~~~~~~~----~---g----------------d~vl~~~p~y~~~~~~~~~~-g~~------------------- 121 (364)
T 1lc5_A 85 ETESIFTVASGL----K---P----------------RRAMIVTPGFAEYGRALAQS-GCE------------------- 121 (364)
T ss_dssp HHHHHHHHHHHH----C---C----------------SEEEEEESCCTHHHHHHHHT-TCE-------------------
T ss_pred HHHHHHHHHHHc----C---C----------------CeEEEeCCCcHHHHHHHHHc-CCe-------------------
Confidence 999999999876 1 1 37999999999965443221 110
Q ss_pred CCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEE-EEEEccc
Q 005009 550 PPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIG-ALIIEPV 628 (719)
Q Consensus 550 ~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iA-AvIvEPV 628 (719)
...++.... ++ +.. .+.+.+.+. .++. .+|.+|
T Consensus 122 ---------~~~v~~~~~-------------~~----~~~-----------l~~~~~~~~--------~~~~~v~i~~p- 155 (364)
T 1lc5_A 122 ---------IRRWSLREA-------------DG----WQL-----------TDAILEALT--------PDLDCLFLCTP- 155 (364)
T ss_dssp ---------EEEEECCGG-------------GT----TCC-----------CTTHHHHCC--------TTCCEEEEESS-
T ss_pred ---------EEEEeCCcc-------------cc----cch-----------hHHHHHhcc--------CCCCEEEEeCC-
Confidence 001111100 00 000 011111221 2233 455677
Q ss_pred cccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc-ccc-cccCCCcceeeehhccC-CCccchheeE-eC
Q 005009 629 VHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTA-DLLGCVPDIACYGKLLT-GGVIPLAATL-AT 704 (719)
Q Consensus 629 iqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~-~a~-e~~gv~PDIvtlgK~Lg-gG~~Plsavl-~~ 704 (719)
+...|.+ .|.+++++|.++|++||+++|+||++++|++.|.. +.. +.++....+.+++|.+| +| +++|+++ ++
T Consensus 156 -~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~ 232 (364)
T 1lc5_A 156 -NNPTGLL-PERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPG-LRLGYLVNSD 232 (364)
T ss_dssp -CTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTT-TCCEEEECCC
T ss_pred -CCCCCCC-CCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhhcCCc-cceEEEEECC
Confidence 4656765 57899999999999999999999999988765542 221 23344444558999998 78 7999999 99
Q ss_pred HHHHhhhc
Q 005009 705 NAVFDSFV 712 (719)
Q Consensus 705 ~~i~~~~~ 712 (719)
+++++.+.
T Consensus 233 ~~~~~~l~ 240 (364)
T 1lc5_A 233 DAAMARMR 240 (364)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=99.55 E-value=6e-14 Score=151.74 Aligned_cols=231 Identities=9% Similarity=-0.011 Sum_probs=154.0
Q ss_pred EEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCC--CCC-eEE
Q 005009 389 VYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG--WAS-RAY 465 (719)
Q Consensus 389 l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~--~~~-rv~ 465 (719)
++|.+|+ ++|||.+|.. .++ . +|.|.+|+.++++............+...++++.|.+..+.. ..+ .++
T Consensus 24 ~~~~~g~----~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~~i~ 95 (396)
T 3jtx_A 24 ISAPEGM----EAVPLHIGEP--KHP-T-PKVITDALTASLHELEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEIL 95 (396)
T ss_dssp CCCCTTC----CCEECSCCSC--CSC-C-CHHHHHHHHHTGGGGGSCCCTTCCHHHHHHHHHHHHHHTTTCCCCTTTSEE
T ss_pred hhhccCC----CeEEeCCcCC--CCC-C-CHHHHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHHHhcCCCCCCCCCeEE
Confidence 5688899 9999999763 344 5 899999999998754433222223566777888877654421 135 899
Q ss_pred EeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCC
Q 005009 466 FSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRG 545 (719)
Q Consensus 466 f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~ 545 (719)
|+++|++|++.+++... ..|. ..++.+|++...+||+....+... |..
T Consensus 96 ~t~g~~~al~~~~~~~~-----~~g~-----------~~~~d~vl~~~p~~~~~~~~~~~~-g~~--------------- 143 (396)
T 3jtx_A 96 PVLGSREALFSFVQTVL-----NPVS-----------DGIKPAIVSPNPFYQIYEGATLLG-GGE--------------- 143 (396)
T ss_dssp EESSHHHHHHHHHHHHC-----CC--------------CCCCEEEEEESCCHHHHHHHHHT-TCE---------------
T ss_pred EcCCcHHHHHHHHHHHh-----CCCC-----------ccCCCEEEEcCCCcHhHHHHHHHc-CCE---------------
Confidence 99999999999999872 1110 001258999999999865533222 110
Q ss_pred cccCCCcccccCcceeecCc-chhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEE
Q 005009 546 LFLDPPTVFMYNSKWILSLP-EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALI 624 (719)
Q Consensus 546 ~~~~~p~~~~~~~~~~~~~P-~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI 624 (719)
...++.+ +.+. .| .+.+++.+.+ ++.+|+
T Consensus 144 -------------~~~v~~~~~g~~-----------~d------------------~~~l~~~~~~--------~~~~v~ 173 (396)
T 3jtx_A 144 -------------IHFANCPAPSFN-----------PD------------------WRSISEEVWK--------RTKLVF 173 (396)
T ss_dssp -------------EEEEECCTTTCC-----------CC------------------GGGSCHHHHH--------TEEEEE
T ss_pred -------------EEEeecCCCCCc-----------cC------------------HHHHHHhhcc--------CcEEEE
Confidence 0011110 0000 01 1234444542 456666
Q ss_pred EccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccC-cccccc--------ccCCCcceeeehhccC-CC
Q 005009 625 IEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG-VETTAD--------LLGCVPDIACYGKLLT-GG 694 (719)
Q Consensus 625 vEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG-~~~a~e--------~~gv~PDIvtlgK~Lg-gG 694 (719)
++.. +...|.+. |.+.+++|.++|++||+++|+||++++|.+.| ..+... .++...++.+++|.++ .|
T Consensus 174 l~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 251 (396)
T 3jtx_A 174 VCSP-NNPSGSVL-DLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPG 251 (396)
T ss_dssp EESS-CTTTCCCC-CHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCGG
T ss_pred EECC-CCCCCCcC-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEeccccccCCcc
Confidence 6554 77778765 56679999999999999999999999998888 444332 1456677789999876 57
Q ss_pred ccchheeEeCHHHHhhhc
Q 005009 695 VIPLAATLATNAVFDSFV 712 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~ 712 (719)
+++|++++++++++.+.
T Consensus 252 -~r~G~~~~~~~~~~~~~ 268 (396)
T 3jtx_A 252 -LRSGFVAGDAELLKNFL 268 (396)
T ss_dssp -GCCEEEEECHHHHHHHH
T ss_pred -cceEEEEeCHHHHHHHH
Confidence 79999999999988764
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=3.7e-14 Score=152.93 Aligned_cols=212 Identities=11% Similarity=0.048 Sum_probs=146.4
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCC-hHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVY-EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIAL 478 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~-~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~Al 478 (719)
.+|||.+|.. .++ . +|.+.+++.+++++... +.. ....+|.+.|+++++.+ .+.++|+++|++|++.++
T Consensus 26 ~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~-----y~~~~~~~~l~~~la~~~~~~-~~~v~~~~g~~~a~~~~~ 95 (381)
T 1v2d_A 26 GAVNLGQGFP--SNP-P-PPFLLEAVRRALGRQDQ-----YAPPAGLPALREALAEEFAVE-PESVVVTSGATEALYVLL 95 (381)
T ss_dssp TCEECCCCSC--SSC-C-CHHHHHHHHHHTTTSCS-----CCCTTCCHHHHHHHHHHHTSC-GGGEEEESSHHHHHHHHH
T ss_pred CeEEecCCCC--CCC-C-CHHHHHHHHHHHHHhcC-----CCCCCCCHHHHHHHHHhcCCC-hhhEEEcCChHHHHHHHH
Confidence 4788887754 456 6 89999999999876111 111 23467888888877643 357999999999999999
Q ss_pred HHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCc
Q 005009 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (719)
Q Consensus 479 KlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 558 (719)
+.+. .. ..+|+..+.+||+.... +...|..
T Consensus 96 ~~~~-----~~----------------gd~Vl~~~~~~~~~~~~-~~~~g~~---------------------------- 125 (381)
T 1v2d_A 96 QSLV-----GP----------------GDEVVVLEPFFDVYLPD-AFLAGAK---------------------------- 125 (381)
T ss_dssp HHHC-----CT----------------TCEEEEEESCCTTHHHH-HHHTTCE----------------------------
T ss_pred HHhC-----CC----------------CCEEEEcCCCchhHHHH-HHHcCCE----------------------------
Confidence 9871 11 24799999999985532 2222110
Q ss_pred ceeecCc---chhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCcc
Q 005009 559 KWILSLP---EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (719)
Q Consensus 559 ~~~~~~P---~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~ 635 (719)
...++.+ +.+ ..| .+.+++.+. .++.+|+++.. +...|.
T Consensus 126 ~~~v~~~~~~~~~-----------~~d------------------~~~l~~~l~--------~~~~~v~~~~~-~nptG~ 167 (381)
T 1v2d_A 126 ARLVRLDLTPEGF-----------RLD------------------LSALEKALT--------PRTRALLLNTP-MNPTGL 167 (381)
T ss_dssp EEEEECEEETTEE-----------ECC------------------HHHHHTTCC--------TTEEEEEEESS-CTTTCC
T ss_pred EEEEeCCCCCccC-----------CcC------------------HHHHHHhcC--------cCCEEEEECCC-CCCCCC
Confidence 0111111 001 011 244554442 35788888876 787887
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeccccCccc--cCc-cccccccCCCcceeeehhccC-CCccchheeEeCHHHHhhh
Q 005009 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR--LGV-ETTADLLGCVPDIACYGKLLT-GGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 636 ~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGR--tG~-~~a~e~~gv~PDIvtlgK~Lg-gG~~Plsavl~~~~i~~~~ 711 (719)
+. |.+++++|.++|++||+++|+||++++|.. .+. ++.. .++..+++.+++|.+| .| +++|++++++++++.+
T Consensus 168 ~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~-~~~~~~~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~ 244 (381)
T 1v2d_A 168 VF-GERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREF-APERTFTVGSAGKRLEATG-YRVGWIVGPKEFMPRL 244 (381)
T ss_dssp CC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHH-CTTTEEEEEEHHHHTTCGG-GCCEEEECCTTTHHHH
T ss_pred cc-CHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHh-cCCCEEEEeechhhcCCcc-cceEEEEeCHHHHHHH
Confidence 64 679999999999999999999999998743 322 2222 4577788889999998 68 7999999999888765
Q ss_pred c
Q 005009 712 V 712 (719)
Q Consensus 712 ~ 712 (719)
.
T Consensus 245 ~ 245 (381)
T 1v2d_A 245 A 245 (381)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.53 E-value=1e-13 Score=153.90 Aligned_cols=228 Identities=10% Similarity=0.020 Sum_probs=149.3
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccC--CCCCChHHHHHHHHHHhccCCC-CCCeEEEeCChHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF--PENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEI 476 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~--~~~~~~~~~~Lae~L~~~~~~~-~~~rv~f~~SGsEA~E~ 476 (719)
.+|||.+|.. .++ . +|.|.+|+.++++....... .....+...++++.+.+..+.+ ..+.++++++|++|++.
T Consensus 58 ~~i~l~~g~~--~~~-~-~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~~ 133 (447)
T 3b46_A 58 ELINLGQGFF--SYS-P-PQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGILS 133 (447)
T ss_dssp CCEECCCCSC--SSC-C-CHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHHH
T ss_pred CeEEccCCCC--CCC-C-CHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHH
Confidence 8999988864 455 6 89999999999876221111 1122345566666666544421 12579999999999999
Q ss_pred HHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCccccc
Q 005009 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (719)
Q Consensus 477 AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (719)
+++.+. .. ..+||..+.+||+....+ ...|...
T Consensus 134 ~~~~l~-----~~----------------gd~Vlv~~p~y~~~~~~~-~~~g~~~------------------------- 166 (447)
T 3b46_A 134 CLMGLL-----NA----------------GDEVIVFEPFFDQYIPNI-ELCGGKV------------------------- 166 (447)
T ss_dssp HHHHHC-----CT----------------TCEEEEEESCCTTHHHHH-HHTTCEE-------------------------
T ss_pred HHHHHc-----CC----------------CCEEEEeCCCchhHHHHH-HHcCCEE-------------------------
Confidence 999872 11 247999999999854432 2222110
Q ss_pred CcceeecCc-ch--hhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 005009 557 NSKWILSLP-EW--LYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (719)
Q Consensus 557 ~~~~~~~~P-~~--~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~g 633 (719)
..++.. +. ..+.. . -.+ + ..| .+.|++.+. .++.+|+++.. +...
T Consensus 167 ---~~v~~~~~~~~~~~~~-~-----~~~----~--~~d--------~~~l~~~l~--------~~~~~v~l~~p-~npt 214 (447)
T 3b46_A 167 ---VYVPINPPKELDQRNT-R-----GEE----W--TID--------FEQFEKAIT--------SKTKAVIINTP-HNPI 214 (447)
T ss_dssp ---EEEEEECCGGGGTSCB-C-----STT----S--EEC--------HHHHHTTCC--------TTEEEEEEESS-CTTT
T ss_pred ---EEEeCCCccccccccc-c-----ccC----c--ccC--------HHHHHHhhc--------cCCeEEEEeCC-CCCC
Confidence 011110 00 00000 0 000 0 001 244554442 36788888876 8888
Q ss_pred ccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc---ccc--cccCCCcceeeehhccC-CCccchheeEe-CHH
Q 005009 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE---TTA--DLLGCVPDIACYGKLLT-GGVIPLAATLA-TNA 706 (719)
Q Consensus 634 G~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~---~a~--e~~gv~PDIvtlgK~Lg-gG~~Plsavl~-~~~ 706 (719)
|.+. +.+++++|.++|++||+++|+||++++|+++|.. ... +.++..+++.+++|.+| .| +++|++++ +++
T Consensus 215 G~~~-~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G-~riG~~~~~~~~ 292 (447)
T 3b46_A 215 GKVF-TREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAATG-WRIGWVLSLNAE 292 (447)
T ss_dssp CCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCTT-SCCEEEECSCHH
T ss_pred Cccc-CHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCCcc-hhhEEEEeCCHH
Confidence 8765 6899999999999999999999999998877742 222 23567777889999998 78 69999999 999
Q ss_pred HHhhhc
Q 005009 707 VFDSFV 712 (719)
Q Consensus 707 i~~~~~ 712 (719)
+++.+.
T Consensus 293 l~~~l~ 298 (447)
T 3b46_A 293 LLSYAA 298 (447)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887664
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-13 Score=148.75 Aligned_cols=224 Identities=11% Similarity=-0.010 Sum_probs=148.7
Q ss_pred CCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccc-cCCCCCChHHHHHHHHHHhccCCC-CCCeEEEeCCh
Q 005009 393 QKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHV-MFPENVYEPALECAELLLQGVGKG-WASRAYFSDNG 470 (719)
Q Consensus 393 dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~-~~~~~~~~~~~~Lae~L~~~~~~~-~~~rv~f~~SG 470 (719)
+|+ .+|||.+|.. .+| . +|.+.+|+.++++..... .......+...++++.+.+..+-. ..+.++|+++|
T Consensus 28 ~g~----~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~ 99 (388)
T 1j32_A 28 EGI----DVCSFSAGEP--DFN-T-PKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGG 99 (388)
T ss_dssp TTC----CCEECCCSSC--SSC-C-CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHH
T ss_pred cCC----CEEECCCCCC--CCC-C-CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCH
Confidence 567 8999988754 456 5 899999999988653211 111123344556666665433310 13689999999
Q ss_pred HHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCC
Q 005009 471 STAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDP 550 (719)
Q Consensus 471 sEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~ 550 (719)
++|++.+++.+. .. ..+|+....+||+.... +...|..
T Consensus 100 ~~a~~~~~~~~~-----~~----------------gd~vl~~~~~~~~~~~~-~~~~g~~-------------------- 137 (388)
T 1j32_A 100 KQSIFNLMLAMI-----EP----------------GDEVIIPAPFWVSYPEM-VKLAEGT-------------------- 137 (388)
T ss_dssp HHHHHHHHHHHC-----CT----------------TCEEEEESSCCTHHHHH-HHHTTCE--------------------
T ss_pred HHHHHHHHHHhc-----CC----------------CCEEEEcCCCChhHHHH-HHHcCCE--------------------
Confidence 999999999871 11 24799999999985432 2222210
Q ss_pred CcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc
Q 005009 551 PTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630 (719)
Q Consensus 551 p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViq 630 (719)
...++.+..- .|. -| .+.+++.+. .++.+|++++. +
T Consensus 138 --------~~~v~~~~~~----------~~~---------~d--------~~~l~~~l~--------~~~~~v~~~~p-~ 173 (388)
T 1j32_A 138 --------PVILPTTVET----------QFK---------VS--------PEQIRQAIT--------PKTKLLVFNTP-S 173 (388)
T ss_dssp --------EEEECCCGGG----------TTC---------CC--------HHHHHHHCC--------TTEEEEEEESS-C
T ss_pred --------EEEecCCccc----------CCC---------CC--------HHHHHHhcC--------cCceEEEEeCC-C
Confidence 0111111000 000 01 255666664 25778888876 7
Q ss_pred cCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc----ccccc--cCCCcceeeehhccC-CCccchheeEe
Q 005009 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE----TTADL--LGCVPDIACYGKLLT-GGVIPLAATLA 703 (719)
Q Consensus 631 g~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~----~a~e~--~gv~PDIvtlgK~Lg-gG~~Plsavl~ 703 (719)
...|.+. |.+.+++|.++|++||+++|+||++++|.+.|.. +.... ++..+++.+++|.+| .| +++|++++
T Consensus 174 nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G-~r~G~~~~ 251 (388)
T 1j32_A 174 NPTGMVY-TPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTG-WRVGFLAG 251 (388)
T ss_dssp TTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTT-TCCEEEEC
T ss_pred CCCCcCC-CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCcc-cceEEEEe
Confidence 8788775 6899999999999999999999999998777642 22221 455667779999998 78 79999999
Q ss_pred CHHHHhhhc
Q 005009 704 TNAVFDSFV 712 (719)
Q Consensus 704 ~~~i~~~~~ 712 (719)
++++++.+.
T Consensus 252 ~~~~~~~l~ 260 (388)
T 1j32_A 252 PVPLVKAAT 260 (388)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 999887663
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.2e-14 Score=155.81 Aligned_cols=219 Identities=16% Similarity=0.140 Sum_probs=146.8
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCC-hHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVY-EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIAL 478 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~-~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~Al 478 (719)
++|||.+|..+ ..||. +|++.+|+.+++++..... ..+.. ....+|.+.|+++.+.+ .+.++++++|++|++.++
T Consensus 33 ~~i~l~~g~~~-~~~~~-~~~v~~a~~~~~~~~~~~~-~~y~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~~~al~~~~ 108 (397)
T 2zyj_A 33 GILSFAGGLPA-PELFP-KEEAAEAAARILREKGEVA-LQYSPTEGYAPLRAFVAEWIGVR-PEEVLITTGSQQALDLVG 108 (397)
T ss_dssp TCEEESSCCCC-GGGCC-HHHHHHHHHHHHHHHHHHH-TSCCCTTCCHHHHHHHHHHHTSC-GGGEEEESHHHHHHHHHH
T ss_pred CceecCCCCCC-chhCC-HHHHHHHHHHHHHhcchhh-hCCCCCCCCHHHHHHHHHHhCCC-hhhEEEeccHHHHHHHHH
Confidence 78999988764 45899 9999999999987643111 01111 22456777777766522 368999999999999999
Q ss_pred HHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCc
Q 005009 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (719)
Q Consensus 479 KlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 558 (719)
+... .. ..+|+....+||+....+.. .|..
T Consensus 109 ~~~~-----~~----------------gd~Vl~~~p~y~~~~~~~~~-~g~~---------------------------- 138 (397)
T 2zyj_A 109 KVFL-----DE----------------GSPVLLEAPSYMGAIQAFRL-QGPR---------------------------- 138 (397)
T ss_dssp HHHC-----CT----------------TCEEEEEESCCHHHHHHHHT-TCCE----------------------------
T ss_pred HHhC-----CC----------------CCEEEEeCCCcHHHHHHHHH-cCCE----------------------------
Confidence 9771 11 24799999999986543222 1110
Q ss_pred ceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEE-EccccccCCcccc
Q 005009 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALI-IEPVVHAAGGMHM 637 (719)
Q Consensus 559 ~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI-vEPViqg~gG~~~ 637 (719)
.+.+|. .. + .-| .+.+++.+.+ .++.+|+ +... +...|.+
T Consensus 139 --~~~~~~--------------~~-~-----~~d--------~~~l~~~l~~-------~~~~~v~~~~~~-~nptG~~- 179 (397)
T 2zyj_A 139 --FLTVPA--------------GE-E-----GPD--------LDALEEVLKR-------ERPRFLYLIPSF-QNPTGGL- 179 (397)
T ss_dssp --EEEEEE--------------ET-T-----EEC--------HHHHHHHHHH-------CCCSCEEECCBS-CTTTCCB-
T ss_pred --EEecCc--------------CC-C-----CCC--------HHHHHHHHhh-------cCCeEEEECCCC-cCCCCCc-
Confidence 011110 00 0 001 2556777753 1345654 4443 6777875
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc-ccccccCCC------cceeeehhccCCCccchheeEeCHHHHhh
Q 005009 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCV------PDIACYGKLLTGGVIPLAATLATNAVFDS 710 (719)
Q Consensus 638 pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~-~a~e~~gv~------PDIvtlgK~LggG~~Plsavl~~~~i~~~ 710 (719)
.|.+++++|.++|++||+++|+||++++|+++|.. .....++.. ..+.+++|.+|+| +++|++++++++++.
T Consensus 180 ~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G-~r~G~~~~~~~~~~~ 258 (397)
T 2zyj_A 180 TPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLSPG-LRVAFAVAHPEALQK 258 (397)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTCGG-GCCEEEECCHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEeccccccccc-ceeEEEecCHHHHHH
Confidence 47899999999999999999999999999887763 333333322 2345899999988 799999999998877
Q ss_pred hc
Q 005009 711 FV 712 (719)
Q Consensus 711 ~~ 712 (719)
+.
T Consensus 259 l~ 260 (397)
T 2zyj_A 259 LV 260 (397)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.52 E-value=7e-14 Score=151.71 Aligned_cols=214 Identities=8% Similarity=0.005 Sum_probs=141.5
Q ss_pred EEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEe
Q 005009 388 SVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFS 467 (719)
Q Consensus 388 ~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~ 467 (719)
.++|.+++ .+.++...+++.+++|. .++..+. ..+++++|+++++.. +.++|+
T Consensus 5 ~~~~~~~~----~~~~~~~~~~~~~~~h~-~~~~~~~--------------------~~~~~~~l~~~~~~~--~~v~~~ 57 (379)
T 3ke3_A 5 LRQDIDPN----GLLEYSVVYTDRALNHM-SKAFQEV--------------------MNDLLSNLKTVYNAE--AAVIIP 57 (379)
T ss_dssp ---CCSTT----SCCCCCSSCCTTSCCTT-SHHHHHH--------------------HHHHHHHHHHHHTCS--EEEEEE
T ss_pred hhccCCHH----HHHHHHHhccCCCCCCC-CHHHHHH--------------------HHHHHHHHHHHhCCC--CEEEEc
Confidence 46889998 88899888888888998 7765533 335667777777643 578999
Q ss_pred CChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcc
Q 005009 468 DNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLF 547 (719)
Q Consensus 468 ~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~ 547 (719)
+||++|++++++.+ . . +.+||++..+|||.+...+........
T Consensus 58 ~sgt~a~~~~~~~~----~--~----------------gd~vi~~~~~~~~~~~~~~~~~~g~~~--------------- 100 (379)
T 3ke3_A 58 GSGTYGMEAVARQL----T--I----------------DEDCLIIRNGWFSYRWTQILEKGKFAK--------------- 100 (379)
T ss_dssp SCHHHHHHHHHHHH----C--T----------------TCEEEEEECSHHHHHHHHHHHHHCCSS---------------
T ss_pred CChhHHHHHHHHhC----C--C----------------CCeEEEEeCCchhHHHHHHHHHhCCCC---------------
Confidence 99999999998654 1 1 248999999999976544332110000
Q ss_pred cCCCcccccCcceeecCcc----hhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEE
Q 005009 548 LDPPTVFMYNSKWILSLPE----WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGAL 623 (719)
Q Consensus 548 ~~~p~~~~~~~~~~~~~P~----~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAv 623 (719)
....++.|. .+... ....| .+.+++.+.+ . ++.+|
T Consensus 101 ----------~~~~~~~~~~g~~~~~~~------~~~~d------------------~~~l~~~i~~----~---~~~~v 139 (379)
T 3ke3_A 101 ----------SSTVLTAERTEDTEAPKP------FAPVD------------------IETAVAKIKE----D---KSAIV 139 (379)
T ss_dssp ----------EEEEEECEESSCCSSCCC------EECCC------------------HHHHHHHHHH----H---TCSEE
T ss_pred ----------ceEEEeccccccccccCC------CCCCC------------------HHHHHHHHhh----c---CCcEE
Confidence 001111111 00000 00011 2556777742 1 22345
Q ss_pred EEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCCccchheeEe
Q 005009 624 IIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLA 703 (719)
Q Consensus 624 IvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~ 703 (719)
++..+ ....|.+. |.+|+++|.++|++||++||+||+|+ | +..+..+.+|+...+.+..|+|+|+ ..+|++++
T Consensus 140 ~~~~~-~~~~G~~~-~~~~l~~i~~~~~~~~~~li~D~~~~--g--~~~~~~~~~~~d~~~~s~~K~l~~~-~g~g~~~~ 212 (379)
T 3ke3_A 140 YAPHV-ETSSGIIL-SEEYIKALSEAVHSVGGLLVIDCIAS--G--CVWLDMKELGIDVLISAPQKGWSST-PCAGLVML 212 (379)
T ss_dssp EEESE-ETTTTEEC-CHHHHHHHHHHHHHTTCEEEEECTTC--T--TCCCCHHHHTCSEEEECTTTTTCSC-CCEEEEEE
T ss_pred EEEee-cCCCceeC-CHHHHHHHHHHHHHcCCEEEEEeccc--C--CccccccccCCCEEEecchhhcCCC-CceEEEEE
Confidence 55443 45566554 68899999999999999999999997 4 5677777888866667778999886 46899999
Q ss_pred CHHHHhhhcC
Q 005009 704 TNAVFDSFVG 713 (719)
Q Consensus 704 ~~~i~~~~~~ 713 (719)
++++++.+..
T Consensus 213 ~~~~~~~l~~ 222 (379)
T 3ke3_A 213 SAAAIKKVES 222 (379)
T ss_dssp CHHHHHHHHT
T ss_pred CHHHHHhhhc
Confidence 9999887754
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.8e-13 Score=147.78 Aligned_cols=219 Identities=13% Similarity=0.034 Sum_probs=146.2
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhccc-ccCCCCCChHHHHHHHHHHhccCCC-CCC-eEEEeCChHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH-VMFPENVYEPALECAELLLQGVGKG-WAS-RAYFSDNGSTAIEI 476 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~-~~~~~~~~~~~~~Lae~L~~~~~~~-~~~-rv~f~~SGsEA~E~ 476 (719)
.+|||.+|.. .+| . +|++.+|+.++++.... ........+....+++.+.+..+.+ ..+ .++|+++|++|++.
T Consensus 31 ~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~ 106 (386)
T 1u08_A 31 QAINLSQGFP--DFD-G-PRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYA 106 (386)
T ss_dssp TCEECCCSSC--SSC-C-CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHH
T ss_pred CeEEecCCCC--CCC-C-CHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHH
Confidence 5889888754 466 5 89999999999876211 1111112344555555555433421 135 89999999999999
Q ss_pred HHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCccccc
Q 005009 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (719)
Q Consensus 477 AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (719)
+++... .. ..+|+....+||+.... +...|..
T Consensus 107 ~~~~~~-----~~----------------gd~vl~~~p~~~~~~~~-~~~~g~~-------------------------- 138 (386)
T 1u08_A 107 AITALV-----RN----------------GDEVICFDPSYDSYAPA-IALSGGI-------------------------- 138 (386)
T ss_dssp HHHHHC-----CT----------------TCEEEEEESCCTTHHHH-HHHTTCE--------------------------
T ss_pred HHHHhC-----CC----------------CCEEEEeCCCchhHHHH-HHHcCCE--------------------------
Confidence 999871 11 24799999999985432 2222110
Q ss_pred CcceeecCcc-hhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCcc
Q 005009 557 NSKWILSLPE-WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (719)
Q Consensus 557 ~~~~~~~~P~-~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~ 635 (719)
...++... .+ ..| .+.+++.+. .++.+|+++.. +...|.
T Consensus 139 --~~~v~~~~~~~-----------~~d------------------~~~l~~~l~--------~~~~~v~l~~p-~nptG~ 178 (386)
T 1u08_A 139 --VKRMALQPPHF-----------RVD------------------WQEFAALLS--------ERTRLVILNTP-HNPSAT 178 (386)
T ss_dssp --EEEEECCTTTC-----------CCC------------------HHHHHHHCC--------TTEEEEEEESS-CTTTCC
T ss_pred --EEEeecCcccC-----------cCC------------------HHHHHHhhc--------ccCEEEEEeCC-CCCCCc
Confidence 00111110 00 001 245666653 35778888875 788887
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc----ccccc-ccCCCcceeeehhccC-CCccchheeEeCHHHHh
Q 005009 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV----ETTAD-LLGCVPDIACYGKLLT-GGVIPLAATLATNAVFD 709 (719)
Q Consensus 636 ~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~----~~a~e-~~gv~PDIvtlgK~Lg-gG~~Plsavl~~~~i~~ 709 (719)
+. |.+++++|.++|++||+++|+||++++|.+.|. ++... .++....+.+++|.+| .| +++|++++++++++
T Consensus 179 ~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~ 256 (386)
T 1u08_A 179 VW-QQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTG-WKVGYCVAPAPISA 256 (386)
T ss_dssp CC-CHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGG-GCCEEEECCHHHHH
T ss_pred cC-CHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcc-cceEEEEcCHHHHH
Confidence 64 788999999999999999999999999877775 22332 3456666779999998 78 79999999999887
Q ss_pred hhc
Q 005009 710 SFV 712 (719)
Q Consensus 710 ~~~ 712 (719)
.+.
T Consensus 257 ~l~ 259 (386)
T 1u08_A 257 EIR 259 (386)
T ss_dssp HHH
T ss_pred HHH
Confidence 663
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.52 E-value=1e-13 Score=147.78 Aligned_cols=222 Identities=13% Similarity=0.087 Sum_probs=142.1
Q ss_pred CCceEEEe-CCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCC
Q 005009 384 GENFSVYQ-DQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWAS 462 (719)
Q Consensus 384 G~g~~l~D-~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~ 462 (719)
|...+.++ .+|+ ++|||.++.. .++ . +|+|.+|+.++++..... ..+...++.++|++..+-. .+
T Consensus 14 g~~~~~~~~~~~~----~~idl~~~~~--~~~-~-~~~v~~a~~~~~~~~~~y-----~~~~~~~l~~~la~~~~~~-~~ 79 (361)
T 3ftb_A 14 GGDIYTEGVFKGR----ELLDYSSNIN--PLG-I-PKSFLNNIDEGIKNLGVY-----PDVNYRRLNKSIENYLKLK-DI 79 (361)
T ss_dssp ------------------CEETTCCCC--TTC-S-CHHHHTTHHHHHHGGGSC-----CCTTCHHHHHHHHHHHTCC-SC
T ss_pred CCCHHHHhhcCCC----CEEEecCCCC--CCC-C-CHHHHHHHHHHHHHhcCC-----CCccHHHHHHHHHHHhCCC-cc
Confidence 44333444 4888 9999998753 455 5 899999999998874322 2333467888888877632 36
Q ss_pred eEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCcc
Q 005009 463 RAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYS 542 (719)
Q Consensus 463 rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~ 542 (719)
.++|+++|++|++.+++.+ .+|+....+||+....+... |..
T Consensus 80 ~i~~~~g~t~al~~~~~~~-------------------------d~vi~~~~~~~~~~~~~~~~-g~~------------ 121 (361)
T 3ftb_A 80 GIVLGNGASEIIELSISLF-------------------------EKILIIVPSYAEYEINAKKH-GVS------------ 121 (361)
T ss_dssp EEEEESSHHHHHHHHHTTC-------------------------SEEEEEESCCTHHHHHHHHT-TCE------------
T ss_pred eEEEcCCHHHHHHHHHHHc-------------------------CcEEEecCChHHHHHHHHHc-CCe------------
Confidence 8999999999999998865 17899999999854433222 110
Q ss_pred CCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEE
Q 005009 543 GRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGA 622 (719)
Q Consensus 543 ~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAA 622 (719)
...++.... +. + + .+.+++.+. . ..+.
T Consensus 122 ----------------~~~~~~~~~-------------~~----~-------~-----~~~l~~~l~-------~-~~~v 148 (361)
T 3ftb_A 122 ----------------VVFSYLDEN-------------MC----I-------D-----YEDIISKID-------D-VDSV 148 (361)
T ss_dssp ----------------EEEEECCTT-------------SC----C-------C-----HHHHHHHTT-------T-CSEE
T ss_pred ----------------EEEeecCcc-------------cC----C-------C-----HHHHHHhcc-------C-CCEE
Confidence 001111100 00 0 0 145666664 1 2344
Q ss_pred EEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee---eehhccC-CCccch
Q 005009 623 LIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPL 698 (719)
Q Consensus 623 vIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv---tlgK~Lg-gG~~Pl 698 (719)
++..| +...|.+. |.+.+++|.++|++||+++|+||++++|++.+........+..++++ +++|.+| +| +++
T Consensus 149 ~i~~p--~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~ 224 (361)
T 3ftb_A 149 IIGNP--NNPNGGLI-NKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKFFAMPG-IRF 224 (361)
T ss_dssp EEETT--BTTTTBCC-CHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSSTTSCGG-GCC
T ss_pred EEeCC--CCCCCCCC-CHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeChhhcCCCC-cce
Confidence 45556 56667655 67789999999999999999999999987763333334444444444 7899998 78 799
Q ss_pred heeE-eCHHHHhhhcCC
Q 005009 699 AATL-ATNAVFDSFVGD 714 (719)
Q Consensus 699 savl-~~~~i~~~~~~~ 714 (719)
|+++ .++++++.+...
T Consensus 225 g~~~~~~~~~~~~~~~~ 241 (361)
T 3ftb_A 225 GYGITNNKEIAAKIKAK 241 (361)
T ss_dssp EEEEESCHHHHHHHHTT
T ss_pred eEEEeCCHHHHHHHHhh
Confidence 9988 899999887654
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-13 Score=150.14 Aligned_cols=222 Identities=12% Similarity=0.028 Sum_probs=144.7
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhc-ccccCCCCCChHHHHHHHHHHhccCCC-CCC-eEEEeCChHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARF-GHVMFPENVYEPALECAELLLQGVGKG-WAS-RAYFSDNGSTAIEI 476 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~-~~~~~~~~~~~~~~~Lae~L~~~~~~~-~~~-rv~f~~SGsEA~E~ 476 (719)
.+|||.+|.. .+| . +|++.+|+.++++.. ..........+...++++.+.+..+.+ ..+ .++|+++|++|++.
T Consensus 26 ~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~ 101 (411)
T 2o0r_A 26 GAVNLGQGFP--DED-G-PPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAA 101 (411)
T ss_dssp TCEESSCSSC--SSC-C-CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHH
T ss_pred CeeeccCcCC--CCC-C-CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHH
Confidence 4788877653 466 5 899999999999762 111111112344555555555433421 134 89999999999999
Q ss_pred HHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCccccc
Q 005009 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (719)
Q Consensus 477 AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (719)
+++.+. .. ..+|++...+||+.... +...|..
T Consensus 102 ~~~~~~-----~~----------------gd~Vl~~~~~y~~~~~~-~~~~g~~-------------------------- 133 (411)
T 2o0r_A 102 AVLGLV-----EP----------------GSEVLLIEPFYDSYSPV-VAMAGAH-------------------------- 133 (411)
T ss_dssp HHHHHC-----CT----------------TCEEEEEESCCTTHHHH-HHHTTCE--------------------------
T ss_pred HHHHhc-----CC----------------CCEEEEeCCCcHhHHHH-HHHcCCE--------------------------
Confidence 998871 11 24799999999985432 2222210
Q ss_pred CcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccc
Q 005009 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (719)
Q Consensus 557 ~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~ 636 (719)
...++..... ++ + .-| .+.+++.+. .++.+|+++.. +...|.+
T Consensus 134 --~~~v~~~~~~------------~~----~--~~d--------~~~l~~~l~--------~~~~~v~l~~~-~nptG~~ 176 (411)
T 2o0r_A 134 --RVTVPLVPDG------------RG----F--ALD--------ADALRRAVT--------PRTRALIINSP-HNPTGAV 176 (411)
T ss_dssp --EEEEECEEET------------TE----E--ECC--------HHHHHHHCC--------TTEEEEEEESS-CTTTCCC
T ss_pred --EEEeeccccc------------cC----C--CCC--------HHHHHHhhc--------cCceEEEEeCC-CCCCCCC
Confidence 0111111000 00 0 001 255666653 25778888876 8888876
Q ss_pred cCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc-ccccc----cCCCcceeeehhccC-CCccchheeEeCHHHHhh
Q 005009 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADL----LGCVPDIACYGKLLT-GGVIPLAATLATNAVFDS 710 (719)
Q Consensus 637 ~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~-~a~e~----~gv~PDIvtlgK~Lg-gG~~Plsavl~~~~i~~~ 710 (719)
.|.+++++|.++|++||+++|+||++++|++.|+. ..... ++....+.+++|.+| .| +++|++++++++++.
T Consensus 177 -~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~ 254 (411)
T 2o0r_A 177 -LSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTG-WKIGWACGPAELIAG 254 (411)
T ss_dssp -CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTT-TCEEEEECCHHHHHH
T ss_pred -CCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCcc-ceEEEEeeCHHHHHH
Confidence 47899999999999999999999999998887752 22222 333444568999998 78 799999999998876
Q ss_pred hc
Q 005009 711 FV 712 (719)
Q Consensus 711 ~~ 712 (719)
+.
T Consensus 255 l~ 256 (411)
T 2o0r_A 255 VR 256 (411)
T ss_dssp HH
T ss_pred HH
Confidence 63
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.52 E-value=6e-14 Score=150.67 Aligned_cols=220 Identities=9% Similarity=-0.018 Sum_probs=144.8
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCC-CCCeEEEeCChHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIAL 478 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~-~~~rv~f~~SGsEA~E~Al 478 (719)
.+|||.+|. ..++ . +|+|.+|+.+++.............+...++++.+.+..+.. ..++++|+++|++|++.++
T Consensus 24 ~~i~l~~~~--~~~~-~-~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~~~ 99 (376)
T 3ezs_A 24 RGLDLGIGE--PQFE-T-PKFIQDALKNHTHSLNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFP 99 (376)
T ss_dssp CCCBCSSCC--CCSC-C-CHHHHHHHHTTGGGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHHHH
T ss_pred CEEEeCCCC--CCCC-C-CHHHHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHHHH
Confidence 589998876 3455 5 899999999988544332211223456667777776654521 1368999999999999999
Q ss_pred HHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCc
Q 005009 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (719)
Q Consensus 479 KlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 558 (719)
+... +. ....+|+....+||+....+... |..
T Consensus 100 ~~~~-----~~--------------~~gd~vl~~~p~~~~~~~~~~~~-g~~---------------------------- 131 (376)
T 3ezs_A 100 SFVL-----FD--------------YQNPTIAYPNPFYQIYEGAAKFI-KAK---------------------------- 131 (376)
T ss_dssp HHHT-----TT--------------CSSCEEEEEESCCTHHHHHHHHT-TCE----------------------------
T ss_pred HHHc-----CC--------------CCCCEEEEecCCcHhHHHHHHHc-CCE----------------------------
Confidence 9872 11 00247999999999855432221 110
Q ss_pred ceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccC
Q 005009 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (719)
Q Consensus 559 ~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~p 638 (719)
...++..+. +. + +. .+++.+.+ ++.+|++... +...|.+.
T Consensus 132 ~~~~~~~~~-------------~~----~----~~---------~l~~~~~~--------~~~~v~~~~p-~nptG~~~- 171 (376)
T 3ezs_A 132 SLLMPLTKE-------------ND----F----TP---------SLNEKELQ--------EVDLVILNSP-NNPTGRTL- 171 (376)
T ss_dssp EEEEECCGG-------------GT----S----CC---------CCCHHHHH--------HCSEEEECSS-CTTTCCCC-
T ss_pred EEEcccCCC-------------CC----c----ch---------hHHhhhcc--------CCCEEEEcCC-CCCcCCCC-
Confidence 001111100 00 0 00 12223321 2345555443 67778765
Q ss_pred CHHHHHHHHHHHHhcCCcEEEeccccCccccCcccccc---------ccCCCcceeeehhccC-CCccchheeEeCHHHH
Q 005009 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD---------LLGCVPDIACYGKLLT-GGVIPLAATLATNAVF 708 (719)
Q Consensus 639 p~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e---------~~gv~PDIvtlgK~Lg-gG~~Plsavl~~~~i~ 708 (719)
|.+.+++|.++|++||++||+||++++|.++|..+... .++...++.+++|.+| +| +++|+++++++++
T Consensus 172 ~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~ 250 (376)
T 3ezs_A 172 SLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPG-LRSGFIAGDSRLL 250 (376)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGG-GCCEEEEECHHHH
T ss_pred CHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCcc-ceeEEEeeCHHHH
Confidence 67789999999999999999999999998888654432 3455666779999997 78 7999999999998
Q ss_pred hhhc
Q 005009 709 DSFV 712 (719)
Q Consensus 709 ~~~~ 712 (719)
+.+.
T Consensus 251 ~~~~ 254 (376)
T 3ezs_A 251 EKYK 254 (376)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-13 Score=148.18 Aligned_cols=218 Identities=11% Similarity=0.004 Sum_probs=152.6
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlK 479 (719)
.+|||.++. +.+ .. +|+|.+|+.++++..... .+..+...+|.++|+++++....+.++|+++|++|++.+++
T Consensus 31 ~~i~l~~~~--~~~-~~-~~~v~~a~~~~~~~~~~~---~y~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~ 103 (367)
T 3euc_A 31 GLVKLDAME--NPY-RL-PPALRSELAARLGEVALN---RYPVPSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLAL 103 (367)
T ss_dssp TCEECCSSC--CCC-CC-CHHHHHHHHHHHHHHHTT---CSCCCCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHH
T ss_pred CeeEccCCC--CCC-CC-CHHHHHHHHHHhhhhhhh---cCCCCcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHH
Confidence 789998865 333 36 899999999998753222 22333467888889888764113689999999999999998
Q ss_pred HHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcc
Q 005009 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (719)
Q Consensus 480 lA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (719)
... +. ..+|+....+||+....+... |.. .
T Consensus 104 ~~~-----~~----------------gd~Vl~~~~~~~~~~~~~~~~-g~~----------------------------~ 133 (367)
T 3euc_A 104 AAA-----RP----------------GAKVMAPVPGFVMYAMSAQFA-GLE----------------------------F 133 (367)
T ss_dssp HTC-----CT----------------TCEEEEEESCSCCSCHHHHTT-TCE----------------------------E
T ss_pred HHc-----CC----------------CCEEEEcCCCHHHHHHHHHHc-CCe----------------------------E
Confidence 761 11 247999999999854432221 100 0
Q ss_pred eeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCC
Q 005009 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (719)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (719)
..++....+ ..| .+.+++.+.+ .++.+|+++.. +...|.+. |
T Consensus 134 ~~v~~~~~~-----------~~d------------------~~~l~~~l~~-------~~~~~v~~~~~-~nptG~~~-~ 175 (367)
T 3euc_A 134 VGVPLRADF-----------TLD------------------RGAMLAAMAE-------HQPAIVYLAYP-NNPTGNLF-D 175 (367)
T ss_dssp EEEECCTTS-----------CCC------------------HHHHHHHHHH-------HCCSEEEEESS-CTTTCCCC-C
T ss_pred EEecCCCCC-----------CCC------------------HHHHHHHhhc-------cCCCEEEEcCC-CCCCCCCC-C
Confidence 111111111 001 2556777752 14567777765 78788766 6
Q ss_pred HHHHHHHHHHHHhc--CCcEEEeccccCccccCccccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 640 PLFQRILVKECQNR--KIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 640 ~~fl~~Lr~Lc~k~--gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
.+.+++|.++|++| |+++|+||++++|+..+.....+.++...++.+++|...+| +++|++++++++++.+..
T Consensus 176 ~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G-~r~G~~~~~~~~~~~~~~ 250 (367)
T 3euc_A 176 AADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKLGLAG-IRLGYVAGDPQWLEQLDK 250 (367)
T ss_dssp HHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCTTSCS-CCEEEEEECHHHHHHHGG
T ss_pred HHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEecchhhcccc-cCceeeeeCHHHHHHHHH
Confidence 77899999999999 99999999999997666655666666667788999995567 799999999999988764
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.52 E-value=1e-13 Score=151.55 Aligned_cols=224 Identities=11% Similarity=0.048 Sum_probs=139.2
Q ss_pred CCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccC--CCCCChHHHHHHHHHHhccCCC-CC-CeEEEe
Q 005009 392 DQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF--PENVYEPALECAELLLQGVGKG-WA-SRAYFS 467 (719)
Q Consensus 392 ~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~--~~~~~~~~~~Lae~L~~~~~~~-~~-~rv~f~ 467 (719)
.+|+ ++|||.+|.. .+| . +|.|.+|+.++++......+ .....+....+++.+.+..+.. .. +.++++
T Consensus 34 ~~g~----~~idl~~g~~--~~~-~-~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t 105 (412)
T 2x5d_A 34 RRGE----DIIDLSMGNP--DGP-T-PPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVT 105 (412)
T ss_dssp HTTC----CCEECSSCCC--CSC-C-CHHHHHHHHHTC---------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEE
T ss_pred hcCC----CEEecCCCCC--CCC-C-CHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEc
Confidence 4577 8999998763 567 6 89999999999876421111 1112233344444443322421 12 489999
Q ss_pred CChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcc
Q 005009 468 DNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLF 547 (719)
Q Consensus 468 ~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~ 547 (719)
++|++|++.+++... .+ ..+|++...+||+....+.. .|..
T Consensus 106 ~g~~~a~~~~~~~~~-----~~----------------gd~Vl~~~p~~~~~~~~~~~-~g~~----------------- 146 (412)
T 2x5d_A 106 IGSKEGLAHLMLATL-----DH----------------GDTILVPNPSYPIHIYGAVI-AGAQ----------------- 146 (412)
T ss_dssp SCHHHHHHHHHHHHC-----CT----------------TCEEEEEESCCHHHHHHHHH-HTCE-----------------
T ss_pred CChHHHHHHHHHHhC-----CC----------------CCEEEEcCCCchhHHHHHHH-cCCE-----------------
Confidence 999999999999761 11 24799999999986544322 1110
Q ss_pred cCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE-c
Q 005009 548 LDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII-E 626 (719)
Q Consensus 548 ~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIv-E 626 (719)
...++.. . + ... ....+.+++.+. .++.+|++ .
T Consensus 147 -----------~~~~~~~----------------~-~---------~~~-~~d~~~l~~~i~--------~~~~~v~l~~ 180 (412)
T 2x5d_A 147 -----------VRSVPLV----------------P-G---------IDF-FNELERAIRESI--------PKPRMMILGF 180 (412)
T ss_dssp -----------EEEEECS----------------T-T---------SCH-HHHHHHHHHTEE--------SCCSEEEEES
T ss_pred -----------EEEeecC----------------C-c---------cCC-CCCHHHHHHhcc--------cCceEEEECC
Confidence 0011110 0 0 000 001245555553 23445555 5
Q ss_pred cccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc-cccccc----cCCCcceeeehhccC-CCccchhe
Q 005009 627 PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADL----LGCVPDIACYGKLLT-GGVIPLAA 700 (719)
Q Consensus 627 PViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~-~~a~e~----~gv~PDIvtlgK~Lg-gG~~Plsa 700 (719)
| +...|.+ .|.+++++|.++|++||+++|+||++++|.++|+ ...... .+....+.+++|.+| +| +++|+
T Consensus 181 p--~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~ 256 (412)
T 2x5d_A 181 P--SNPTAQC-VELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAG-WRIGF 256 (412)
T ss_dssp S--CTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTT-SCCEE
T ss_pred C--CCCCCCc-CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCcc-cceEE
Confidence 5 5656765 4789999999999999999999999999987775 222222 233444568999998 88 69999
Q ss_pred eEeCHHHHhhhc
Q 005009 701 TLATNAVFDSFV 712 (719)
Q Consensus 701 vl~~~~i~~~~~ 712 (719)
+++++++++.+.
T Consensus 257 ~~~~~~~~~~l~ 268 (412)
T 2x5d_A 257 MVGNPELVSALA 268 (412)
T ss_dssp EEECHHHHHHHH
T ss_pred EEcCHHHHHHHH
Confidence 999999988764
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.6e-14 Score=157.49 Aligned_cols=234 Identities=11% Similarity=-0.010 Sum_probs=145.6
Q ss_pred EEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccC--------CCCC-ChHHHHHHHHHHhccC--
Q 005009 389 VYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF--------PENV-YEPALECAELLLQGVG-- 457 (719)
Q Consensus 389 l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~--------~~~~-~~~~~~Lae~L~~~~~-- 457 (719)
.||.++| .+.++..|+..+.++ ++.+.+++.++.....+... ..+. .....+|.++|+++++
T Consensus 30 ~y~~~~~----p~~~i~lg~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~ 102 (435)
T 3piu_A 30 PYHEVHN----TNGIIQMGLAENQLC---FDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEI 102 (435)
T ss_dssp BCBTTTB----TTSBEECSSCCCCSS---HHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHH
T ss_pred CCCcccC----CCCeEEecccccccc---HHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHh
Confidence 4788888 666666666666555 57899999888765443200 0011 1112355555555443
Q ss_pred ------CCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCC
Q 005009 458 ------KGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSP 531 (719)
Q Consensus 458 ------~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~ 531 (719)
-. .+.++|+++|++|++.+++... +. ...|++.+.+||+........+|...
T Consensus 103 ~~~~~~~~-~~~v~~~~gg~~a~~~~~~~l~-----~~----------------gd~vl~~~p~~~~~~~~~~~~~g~~~ 160 (435)
T 3piu_A 103 RGNKVTFD-PNHLVLTAGATSANETFIFCLA-----DP----------------GEAVLIPTPYYPGFDRDLKWRTGVEI 160 (435)
T ss_dssp TTTSSCCC-GGGEEEEEHHHHHHHHHHHHHC-----CT----------------TCEEEEEESCCTTHHHHTTTTTCCEE
T ss_pred hCCCCCCC-HHHEEEcCChHHHHHHHHHHhc-----CC----------------CCeEEECCCccccHHHHHHHhcCCEE
Confidence 11 3689999999999999999871 11 23688888888775433221222110
Q ss_pred CCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcC
Q 005009 532 YTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQN 611 (719)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~ 611 (719)
..++... +..| .-| .+.+++.+.+.
T Consensus 161 ----------------------------~~~~~~~-----------------~~~~--~~d--------~~~l~~~l~~~ 185 (435)
T 3piu_A 161 ----------------------------VPIHCTS-----------------SNGF--QIT--------ETALEEAYQEA 185 (435)
T ss_dssp ----------------------------EEEECCG-----------------GGTS--CCC--------HHHHHHHHHHH
T ss_pred ----------------------------EEeeCCC-----------------ccCC--cCC--------HHHHHHHHHHH
Confidence 0111110 0000 001 24455555421
Q ss_pred CCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccc-cccCCC---------
Q 005009 612 PGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA-DLLGCV--------- 681 (719)
Q Consensus 612 ~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~-e~~gv~--------- 681 (719)
. ....++.+|++++. +...|.+. +.+.+++|.++|++||++||+||++++++++|+.+.. ..++..
T Consensus 186 ~--~~~~~~~~v~i~~p-~nptG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 261 (435)
T 3piu_A 186 E--KRNLRVKGVLVTNP-SNPLGTTM-TRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEV 261 (435)
T ss_dssp H--HTTCCEEEEEEESS-CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CG
T ss_pred H--hcCCCeEEEEEcCC-CCCCCCCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHhccccccccccCC
Confidence 0 12346888888876 78788754 6778999999999999999999999998888875432 222212
Q ss_pred cc----eeeehhccC-CCccchheeEe-CHHHHhhh
Q 005009 682 PD----IACYGKLLT-GGVIPLAATLA-TNAVFDSF 711 (719)
Q Consensus 682 PD----IvtlgK~Lg-gG~~Plsavl~-~~~i~~~~ 711 (719)
+| +.+++|++| +| +++|++++ ++++.+.+
T Consensus 262 ~~~~i~i~s~sK~~g~~G-~r~G~~~~~~~~~~~~~ 296 (435)
T 3piu_A 262 WQRVHVVYSLSKDLGLPG-FRVGAIYSNDDMVVAAA 296 (435)
T ss_dssp GGGEEEEEESSSSSCCGG-GCEEEEEESCHHHHHHH
T ss_pred CCCEEEEEeeecccCCCc-eeEEEEEeCCHHHHHHH
Confidence 55 558999998 88 79999999 56676655
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=9.6e-14 Score=151.32 Aligned_cols=228 Identities=10% Similarity=-0.058 Sum_probs=141.5
Q ss_pred eeeeccccccccCCCCC-CCHHHHHHHHHhhhhcccccCCCC-CChHHHHHHHHHHhccCCC-----CCCeEEE--eCCh
Q 005009 400 QQFDACASWWTQGPDAT-LQIELARDMGYTAARFGHVMFPEN-VYEPALECAELLLQGVGKG-----WASRAYF--SDNG 470 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~-~hP~V~~Av~~q~~~~~~~~~~~~-~~~~~~~Lae~L~~~~~~~-----~~~rv~f--~~SG 470 (719)
.++||.+|......||. ..|.|.+|+.+++....... .+ ......+|.+.|+++++.. ..++++| +++|
T Consensus 31 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~--~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~gg 108 (412)
T 1ajs_A 31 RKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNH--EYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGG 108 (412)
T ss_dssp TCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCC--CCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHH
T ss_pred CceeeccceecCCCCCccccHHHHHHHHHhhhChhhcc--CCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECCCc
Confidence 78999888754555554 14899999998873211110 11 1222345666666654210 1368999 9999
Q ss_pred HHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCC
Q 005009 471 STAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDP 550 (719)
Q Consensus 471 sEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~ 550 (719)
++|++.+++++ +.+. .|. ...+.+|++...+||+....+... |..
T Consensus 109 ~~a~~~~~~~~-~~~~--~g~-----------~~~~d~Vl~~~p~y~~~~~~~~~~-g~~-------------------- 153 (412)
T 1ajs_A 109 TGALRIGAEFL-ARWY--NGT-----------NNKDTPVYVSSPTWENHNGVFTTA-GFK-------------------- 153 (412)
T ss_dssp HHHHHHHHHHH-HHHS--SSS-----------SCCCSCEEEEESCCTHHHHHHHHT-TCS--------------------
T ss_pred HHHHHHHHHHH-HHhC--cCc-----------CCCCCeEEEcCCCcHHHHHHHHHc-CCc--------------------
Confidence 99999999876 3332 110 000147999999999965433222 110
Q ss_pred CcccccCcceeecC--cchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEE-EEcc
Q 005009 551 PTVFMYNSKWILSL--PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGAL-IIEP 627 (719)
Q Consensus 551 p~~~~~~~~~~~~~--P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAv-IvEP 627 (719)
....++. ++.+ .-| .+.+++.+.+ . ..+..++ +..|
T Consensus 154 -------~~~~~~~~~~~~~---------------------~~d--------~~~l~~~l~~----~-~~~~~~v~~~~p 192 (412)
T 1ajs_A 154 -------DIRSYRYWDTEKR---------------------GLD--------LQGFLSDLEN----A-PEFSIFVLHACA 192 (412)
T ss_dssp -------CEEEEECEETTTT---------------------EEC--------HHHHHHHHHH----S-CTTCEEEEESSS
T ss_pred -------eeEEEeeecCCCC---------------------ccC--------HHHHHHHHHh----C-CCCcEEEEECCC
Confidence 0001111 0001 001 2556667763 1 2234444 4556
Q ss_pred ccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccC---ccccccccCCCcc----eeeehhccCC-Cccchh
Q 005009 628 VVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG---VETTADLLGCVPD----IACYGKLLTG-GVIPLA 699 (719)
Q Consensus 628 Viqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG---~~~a~e~~gv~PD----IvtlgK~Lgg-G~~Pls 699 (719)
+...|. ..+.+++++|.++|++||+++|+||++++|++.| .++....+...+| +.+++|.+|. | +++|
T Consensus 193 --~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~riG 268 (412)
T 1ajs_A 193 --HNPTGT-DPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYN-ERVG 268 (412)
T ss_dssp --CTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGG-GCEE
T ss_pred --CCCCCC-CCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEEEEecccccCCCC-cceE
Confidence 444565 5689999999999999999999999999999987 5555554433455 4589999998 9 7999
Q ss_pred eeEe---CHHHHh
Q 005009 700 ATLA---TNAVFD 709 (719)
Q Consensus 700 avl~---~~~i~~ 709 (719)
++++ ++++++
T Consensus 269 ~~~~~~~~~~~~~ 281 (412)
T 1ajs_A 269 NLTVVAKEPDSIL 281 (412)
T ss_dssp EEEEECSSHHHHH
T ss_pred EEEEecCCHHHHH
Confidence 9999 887433
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-13 Score=149.50 Aligned_cols=215 Identities=12% Similarity=0.012 Sum_probs=136.7
Q ss_pred eeeeccccccccCCC--CCCCHHHHHHHHHhhhhcccccCCCC-CChHHHHHHHHHHhccCC-C----CCCeEEE--eCC
Q 005009 400 QQFDACASWWTQGPD--ATLQIELARDMGYTAARFGHVMFPEN-VYEPALECAELLLQGVGK-G----WASRAYF--SDN 469 (719)
Q Consensus 400 ~yLD~~sg~~~~~lG--H~~hP~V~~Av~~q~~~~~~~~~~~~-~~~~~~~Lae~L~~~~~~-~----~~~rv~f--~~S 469 (719)
.+|||.+|.+..+.| +. +|+|.+|+.++++..... .+ ......+|.+.|++++.. + ..++++| +++
T Consensus 27 ~~i~l~~g~~~~~~~~~~~-~~~v~~a~~~~~~~~~~~---~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~g 102 (396)
T 2q7w_A 27 GKINLGIGVYKDETGKTPV-LTSVKKAEQYLLENETTK---NYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPG 102 (396)
T ss_dssp -CEESSCCSCCCTTSCCCC-CHHHHHHHHHHHHHCCCC---CCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESH
T ss_pred CceecccccccCCCCCccC-cHHHHHHHHhhcCccccc---CCCCCCCCHHHHHHHHHHHhcCCCCccccccEEEEeccc
Confidence 899999998766666 56 799999999987653111 11 122234555555554411 0 0257888 999
Q ss_pred hHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccC
Q 005009 470 GSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLD 549 (719)
Q Consensus 470 GsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~ 549 (719)
|++|++.+++++ +.+. . ..+|+....+||+....+.... ..
T Consensus 103 ~~~a~~~~~~~~-~~~~--~----------------gd~Vl~~~p~y~~~~~~~~~~g-~~------------------- 143 (396)
T 2q7w_A 103 GTGALRVAADFL-AKNT--S----------------VKRVWVSNPSWPNHKSVFNSAG-LE------------------- 143 (396)
T ss_dssp HHHHHHHHHHHH-HHHS--C----------------CCEEEEEESCCTHHHHHHHHTT-CE-------------------
T ss_pred chhhHHHHHHHH-HHhC--C----------------CCEEEEcCCCchhHHHHHHHcC-Cc-------------------
Confidence 999999999987 3332 1 2379999999999654432221 10
Q ss_pred CCcccccCcceeecCc--chhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcc
Q 005009 550 PPTVFMYNSKWILSLP--EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEP 627 (719)
Q Consensus 550 ~p~~~~~~~~~~~~~P--~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEP 627 (719)
...++.. +.+ .-| .+.+++.+.+ ...+..++++..
T Consensus 144 ---------~~~~~~~~~~~~---------------------~~d--------~~~l~~~l~~-----~~~~~~~v~~~~ 180 (396)
T 2q7w_A 144 ---------VREYAYYDAENH---------------------TLD--------FDALINSLNE-----AQAGDVVLFHGC 180 (396)
T ss_dssp ---------EEEEECEETTTT---------------------EEC--------HHHHHHHHTT-----CCTTCEEEEECS
T ss_pred ---------eEEEecccCCCC---------------------CcC--------HHHHHHHHHh-----CCCCCEEEEeCC
Confidence 0011110 000 001 3567777753 222344454443
Q ss_pred ccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccC--ccccccccCCCcc----eeeehhccC-CCccchhe
Q 005009 628 VVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG--VETTADLLGCVPD----IACYGKLLT-GGVIPLAA 700 (719)
Q Consensus 628 Viqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG--~~~a~e~~gv~PD----IvtlgK~Lg-gG~~Plsa 700 (719)
. +...|. ..+.+++++|.++|++||+++|+||++++|++.| .++....+...+| +.+++|.+| .| +++|+
T Consensus 181 p-~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~riG~ 257 (396)
T 2q7w_A 181 C-HNPTGI-DPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFGLYN-ERVGA 257 (396)
T ss_dssp S-CTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGG-GCCEE
T ss_pred C-CCCCCC-CCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEeccccccccc-cccce
Confidence 3 555666 4578999999999999999999999999998765 4445544433334 347899999 79 69999
Q ss_pred eEe
Q 005009 701 TLA 703 (719)
Q Consensus 701 vl~ 703 (719)
+++
T Consensus 258 ~~~ 260 (396)
T 2q7w_A 258 CTL 260 (396)
T ss_dssp EEE
T ss_pred EEE
Confidence 987
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-13 Score=149.20 Aligned_cols=221 Identities=12% Similarity=0.028 Sum_probs=141.9
Q ss_pred eeeeccccccccCCC--CCCCHHHHHHHHHhhhhcccccCCCCC-ChHHHHHHHHHHhcc-CCC-CCCeEEE--eCChHH
Q 005009 400 QQFDACASWWTQGPD--ATLQIELARDMGYTAARFGHVMFPENV-YEPALECAELLLQGV-GKG-WASRAYF--SDNGST 472 (719)
Q Consensus 400 ~yLD~~sg~~~~~lG--H~~hP~V~~Av~~q~~~~~~~~~~~~~-~~~~~~Lae~L~~~~-~~~-~~~rv~f--~~SGsE 472 (719)
.+|||.+|......| +. +|+|.+|+.++++..... .+. .....+|.+.|++++ +.+ ..++++| +++|++
T Consensus 27 ~~i~l~~g~~~~~~~~~~~-~~~v~~a~~~~~~~~~~~---~y~~~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~~ 102 (394)
T 2ay1_A 27 GKIDLGVGVYKDATGHTPI-MRAVHAAEQRMLETETTK---TYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTG 102 (394)
T ss_dssp TCEECCCCSCCCTTSCCCC-CHHHHHHHHHHHHHCCCC---CCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHH
T ss_pred cccccccceeeCCCCCccC-cHHHHHHHHHhcCCcccC---CCCCCCCcHHHHHHHHHHHhCCCCCcccEEEEecCCchh
Confidence 789999987766666 67 899999999987642111 111 111234555555443 210 1368999 999999
Q ss_pred HHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCc
Q 005009 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (719)
Q Consensus 473 A~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (719)
|++.+++++ +.+. .| .+|++...+||+....+.... ..
T Consensus 103 a~~~~~~~~-~~~~--~g----------------d~vl~~~p~~~~~~~~~~~~g-~~---------------------- 140 (394)
T 2ay1_A 103 ALRQALELA-RMAN--PD----------------LRVFVSDPTWPNHVSIMNFMG-LP---------------------- 140 (394)
T ss_dssp HHHHHHHHH-HHHC--TT----------------CCEEEEESCCHHHHHHHHHHT-CC----------------------
T ss_pred HHHHHHHHH-HhcC--CC----------------CEEEEcCCCChhHHHHHHHcC-Cc----------------------
Confidence 999999988 4332 11 369999999999654433221 10
Q ss_pred ccccCcceeecCc--chhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc
Q 005009 553 VFMYNSKWILSLP--EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630 (719)
Q Consensus 553 ~~~~~~~~~~~~P--~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViq 630 (719)
...++.. +.+ .-| .+.+++.+.+ .+.+.+++++... +
T Consensus 141 ------~~~~~~~~~~~~---------------------~~d--------~~~l~~~l~~-----~~~~~~~~~~~~~-~ 179 (394)
T 2ay1_A 141 ------VQTYRYFDAETR---------------------GVD--------FEGMKADLAA-----AKKGDMVLLHGCC-H 179 (394)
T ss_dssp ------EEEEECEETTTT---------------------EEC--------HHHHHHHHHT-----CCTTCEEEEESSS-C
T ss_pred ------eEEEecccccCC---------------------ccC--------HHHHHHHHHh-----CCCCCEEEEeCCC-C
Confidence 0011110 000 001 2567777763 2234566776765 7
Q ss_pred cCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccC--ccccccccC-CCccee---eehhccC-CCccchheeEe
Q 005009 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG--VETTADLLG-CVPDIA---CYGKLLT-GGVIPLAATLA 703 (719)
Q Consensus 631 g~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG--~~~a~e~~g-v~PDIv---tlgK~Lg-gG~~Plsavl~ 703 (719)
...|. ..|.+++++|.++|++||+++|+||++++|++.| ..+....+. ..+|++ +++|.+| +| +++|++++
T Consensus 180 nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~riG~~~~ 257 (394)
T 2ay1_A 180 NPTGA-NLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYR-ERTGCLLA 257 (394)
T ss_dssp TTTCC-CCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGG-GCEEEEEE
T ss_pred CCCCC-CCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCcCcC-CccceEEE
Confidence 77776 4578999999999999999999999999998765 333333221 234533 7899999 78 79999998
Q ss_pred ---CHHHHh
Q 005009 704 ---TNAVFD 709 (719)
Q Consensus 704 ---~~~i~~ 709 (719)
++++++
T Consensus 258 ~~~~~~~~~ 266 (394)
T 2ay1_A 258 LCADAATRE 266 (394)
T ss_dssp ECSSHHHHH
T ss_pred EeCCHHHHH
Confidence 666543
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.7e-13 Score=152.58 Aligned_cols=226 Identities=9% Similarity=0.078 Sum_probs=149.1
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcc-----cccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG-----HVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~-----~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~ 474 (719)
.+|||.+|.... -+|. ++++.+|+.++++... +.. .....+....+++.+.+..+....+.++++++|++|+
T Consensus 77 ~~i~l~~g~p~~-~~~p-~~~v~~a~~~~l~~~~~~~~~Y~~-~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al 153 (448)
T 3aow_A 77 DIISLAGGLPNP-KTFP-KEIIRDILVEIMEKYADKALQYGT-TKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQAL 153 (448)
T ss_dssp SSEECCCCCCCG-GGSC-HHHHHHHHHHHHHHSHHHHHSCCC-TTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHH
T ss_pred CcEeCCCCCCCc-hhCC-HHHHHHHHHHHHHhhhHHHhCCCC-CCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHH
Confidence 689999887654 3588 8999999999887632 111 1112233444444443332521136899999999999
Q ss_pred HHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCccc
Q 005009 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (719)
Q Consensus 475 E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~ 554 (719)
+.+++... .. ...|+..+.+|||....... .|.
T Consensus 154 ~~~~~~l~-----~~----------------Gd~Vlv~~p~y~~~~~~~~~-~g~------------------------- 186 (448)
T 3aow_A 154 DLIGRVFL-----NP----------------GDIVVVEAPTYLAALQAFNF-YEP------------------------- 186 (448)
T ss_dssp HHHHHHHC-----CT----------------TCEEEEEESCCHHHHHHHHT-TCC-------------------------
T ss_pred HHHHHHHc-----CC----------------CCEEEEeCCChHHHHHHHHH-cCC-------------------------
Confidence 99999871 11 24799999999985443221 111
Q ss_pred ccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCc
Q 005009 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (719)
Q Consensus 555 ~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG 634 (719)
..+++|. +. + +-| .+.|++.+.... ....++.+|++.|..+.-.|
T Consensus 187 -----~~~~v~~--------------~~-~-----g~d--------~~~L~~~l~~~~--~~~~~~k~v~~~~~~~NPtG 231 (448)
T 3aow_A 187 -----QYIQIPL--------------DD-E-----GMK--------VEILEEKLKELK--SQGKKVKVVYTVPTFQNPAG 231 (448)
T ss_dssp -----EEEEEEE--------------ET-T-----EEC--------HHHHHHHHHHHH--HTTCCEEEEEECCSSCTTTC
T ss_pred -----EEEEecc--------------CC-C-----CCC--------HHHHHHHHhhhh--ccCCCCeEEEECCCCCCCcC
Confidence 0111110 00 0 001 245666664100 01236788877765356667
Q ss_pred cccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc----cccccccCCCcceeeehhccCCCccchheeEeCHHHHhh
Q 005009 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV----ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDS 710 (719)
Q Consensus 635 ~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~----~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~ 710 (719)
.+ .+.+++++|.++|++||+++|+||++++|...|. ++..+..+...++.+++|.++.| +++|++++++++++.
T Consensus 232 ~~-~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~~G-lriG~v~~~~~l~~~ 309 (448)
T 3aow_A 232 VT-MNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKILAPG-FRIGWMVGDPGIIRK 309 (448)
T ss_dssp CC-CCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTTCGG-GCCEEEEECHHHHHH
T ss_pred CC-CCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhcccc-ccEEEEEeCHHHHHH
Confidence 65 5789999999999999999999999998877665 33444445567788999999989 799999999999887
Q ss_pred hc
Q 005009 711 FV 712 (719)
Q Consensus 711 ~~ 712 (719)
+.
T Consensus 310 l~ 311 (448)
T 3aow_A 310 ME 311 (448)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-13 Score=149.97 Aligned_cols=219 Identities=6% Similarity=-0.007 Sum_probs=141.4
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCC--CCCChHHHHHHHHHHhccCCC-C-CCeEEEeCChHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFP--ENVYEPALECAELLLQGVGKG-W-ASRAYFSDNGSTAIE 475 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~--~~~~~~~~~Lae~L~~~~~~~-~-~~rv~f~~SGsEA~E 475 (719)
++|||.+|.. .+| . +|+|.+|+.++++........ ....+....+++.+.+..+.. . .+.++|+++|++|++
T Consensus 48 ~~idl~~g~~--~~~-~-~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~ 123 (404)
T 2o1b_A 48 PLINMAVGIP--DGP-T-PQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLV 123 (404)
T ss_dssp CCEECCCCSC--SSC-C-CHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHH
T ss_pred CEEecCCcCC--CCC-C-CHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHH
Confidence 8999998765 567 5 899999999988642111111 122333444444444433532 0 158999999999999
Q ss_pred HHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccc
Q 005009 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (719)
Q Consensus 476 ~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (719)
.+++... .. ..+|++...+||+....+.. .|..
T Consensus 124 ~~~~~l~-----~~----------------gd~Vl~~~p~y~~~~~~~~~-~g~~------------------------- 156 (404)
T 2o1b_A 124 AVPTCVI-----NP----------------GDYVLLPDPGYTDYLAGVLL-ADGK------------------------- 156 (404)
T ss_dssp HHHHHHC-----CT----------------TCEEEEEESCCSSHHHHHHH-TTCE-------------------------
T ss_pred HHHHHhc-----CC----------------CCEEEEcCCCchhHHHHHHH-CCCE-------------------------
Confidence 9999761 11 24799999999996544322 2110
Q ss_pred cCcceeecCc-chhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCc
Q 005009 556 YNSKWILSLP-EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (719)
Q Consensus 556 ~~~~~~~~~P-~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG 634 (719)
...++.. +.+. .|. +.+++.+. .++.+|+++.. +...|
T Consensus 157 ---~~~v~~~~~~~~-----------~d~------------------~~l~~~l~--------~~~~~v~l~~p-~nptG 195 (404)
T 2o1b_A 157 ---PVPLNLEPPHYL-----------PDW------------------SKVDSQII--------DKTKLIYLTYP-NNPTG 195 (404)
T ss_dssp ---EEEEECCTTTCC-----------CCG------------------GGSCHHHH--------HHEEEEEECSS-CTTTC
T ss_pred ---EEEeccCcccCc-----------CCH------------------HHHHHhhc--------cCceEEEEcCC-CCCCC
Confidence 0011111 0110 111 22334443 25678888754 66678
Q ss_pred cccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc---cccc-ccCCCcceeeehhccC-CCccchheeEeCHHHHh
Q 005009 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE---TTAD-LLGCVPDIACYGKLLT-GGVIPLAATLATNAVFD 709 (719)
Q Consensus 635 ~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~---~a~e-~~gv~PDIvtlgK~Lg-gG~~Plsavl~~~~i~~ 709 (719)
.+ .|.+++++|.++|++||+++|+||++++|.++|+. +... .++....+.+++|.+| +| +++|++++++++++
T Consensus 196 ~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~ 273 (404)
T 2o1b_A 196 ST-ATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSG-FRVGFAVGNKDMIQ 273 (404)
T ss_dssp CC-CCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGG-GCCEEEEECHHHHH
T ss_pred cc-CCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhccCch-hheEeEecCHHHHH
Confidence 76 47899999999999999999999999998776642 2221 1233345568999998 78 79999999999987
Q ss_pred hhc
Q 005009 710 SFV 712 (719)
Q Consensus 710 ~~~ 712 (719)
.+.
T Consensus 274 ~l~ 276 (404)
T 2o1b_A 274 ALK 276 (404)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.7e-13 Score=145.57 Aligned_cols=209 Identities=12% Similarity=0.029 Sum_probs=139.1
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhccccc-CCCCCChHHHHHHHHHHhccCCC-CCCeEEEeCChHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM-FPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIA 477 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~-~~~~~~~~~~~Lae~L~~~~~~~-~~~rv~f~~SGsEA~E~A 477 (719)
.++||.++.. .+|+ +|++.+|+.++++...... ......+...++++.+.+..+.+ ..+.++++++|++|++.+
T Consensus 30 ~~i~l~~~~~--~~~~--~~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~ 105 (370)
T 2z61_A 30 KVIHLEIGEP--DFNT--PKPIVDEGIKSLKEGKTHYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFA 105 (370)
T ss_dssp CCEECCCCSC--SSCC--CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHHHH
T ss_pred CEEEccCCCC--CCCC--CHHHHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHHHH
Confidence 8899988664 5665 6999999999987532111 11122344455555554422210 136899999999999999
Q ss_pred HHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccC
Q 005009 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (719)
Q Consensus 478 lKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (719)
++.+. .. ..+|+..+.+||+....+.. .|.
T Consensus 106 ~~~~~-----~~----------------gd~vl~~~p~~~~~~~~~~~-~g~---------------------------- 135 (370)
T 2z61_A 106 LSSII-----DD----------------GDEVLIQNPCYPCYKNFIRF-LGA---------------------------- 135 (370)
T ss_dssp HHHHC-----CT----------------TCEEEEESSCCTHHHHHHHH-TTC----------------------------
T ss_pred HHHhc-----CC----------------CCEEEEeCCCchhHHHHHHH-cCC----------------------------
Confidence 99871 11 24799999999985543211 110
Q ss_pred cceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCcccc
Q 005009 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (719)
Q Consensus 558 ~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~ 637 (719)
..+.+| .| .+.+++.+. .++.+|+++.. +...|.+.
T Consensus 136 --~~~~v~---------------~d------------------~~~l~~~l~--------~~~~~v~~~~p-~nptG~~~ 171 (370)
T 2z61_A 136 --KPVFCD---------------FT------------------VESLEEALS--------DKTKAIIINSP-SNPLGEVI 171 (370)
T ss_dssp --EEEEEC---------------SS------------------HHHHHHHCC--------SSEEEEEEESS-CTTTCCCC
T ss_pred --EEEEeC---------------CC------------------HHHHHHhcc--------cCceEEEEcCC-CCCcCccc
Confidence 011111 01 245666653 25677888776 78888887
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccccccc-CC-Ccce--eeehhccC-CCccchheeEeCHHHHhhhc
Q 005009 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL-GC-VPDI--ACYGKLLT-GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 638 pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~-gv-~PDI--vtlgK~Lg-gG~~Plsavl~~~~i~~~~~ 712 (719)
+.+ |.++|++||+++|+||+++++.+.|+......+ +. ..|+ .+++|.+| .| +++|++++++++++.+.
T Consensus 172 ~~~-----l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~ 245 (370)
T 2z61_A 172 DRE-----IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTG-WRIGYVISNDEIIEAIL 245 (370)
T ss_dssp CHH-----HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGG-GCCEEEECCHHHHHHHH
T ss_pred CHH-----HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccCCcc-ceEEEEEECHHHHHHHH
Confidence 633 999999999999999999998777765444333 12 2344 47999998 78 69999999999887663
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.7e-13 Score=149.71 Aligned_cols=221 Identities=12% Similarity=0.039 Sum_probs=143.9
Q ss_pred CCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccc-cCCCCCChHHHHHHHHHHhccCCC-CCCeEEEeCCh
Q 005009 393 QKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHV-MFPENVYEPALECAELLLQGVGKG-WASRAYFSDNG 470 (719)
Q Consensus 393 dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~-~~~~~~~~~~~~Lae~L~~~~~~~-~~~rv~f~~SG 470 (719)
+|+ ++|||.++.. .+| . +|++.+|+ ++++..... .......+...++++.+.+..+.+ ..+.+++++||
T Consensus 41 ~g~----~~i~l~~~~~--~~~-~-~~~v~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~ 111 (409)
T 2gb3_A 41 RGV----RIHHLNIGQP--DLK-T-PEVFFERI-YENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGG 111 (409)
T ss_dssp TTC----EEEECSSCCC--CSC-C-CTHHHHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHH
T ss_pred cCC----CEEeccCCCC--CCC-C-CHHHHHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCH
Confidence 567 8999988765 455 4 78999999 888653211 111122344555565555433211 13689999999
Q ss_pred HHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCC
Q 005009 471 STAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDP 550 (719)
Q Consensus 471 sEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~ 550 (719)
++|++.+++.+. .. ..+|+....+||+.... +...|..
T Consensus 112 t~a~~~~~~~~~-----~~----------------gd~Vl~~~~~~~~~~~~-~~~~g~~-------------------- 149 (409)
T 2gb3_A 112 SEAILFSFAVIA-----NP----------------GDEILVLEPFYANYNAF-AKIAGVK-------------------- 149 (409)
T ss_dssp HHHHHHHHHHHC-----CT----------------TCEEEEEESCCTHHHHH-HHHHTCE--------------------
T ss_pred HHHHHHHHHHhC-----CC----------------CCEEEEcCCCchhHHHH-HHHcCCE--------------------
Confidence 999999999871 11 24799999999986543 2222210
Q ss_pred CcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc
Q 005009 551 PTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630 (719)
Q Consensus 551 p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViq 630 (719)
...++.... ++ +.. .+.|++.+. .++.+|+++.. +
T Consensus 150 --------~~~v~~~~~-------------~~----~~~-----------~~~l~~~l~--------~~~~~v~~~~p-~ 184 (409)
T 2gb3_A 150 --------LIPVTRRME-------------EG----FAI-----------PQNLESFIN--------ERTKGIVLSNP-C 184 (409)
T ss_dssp --------EEEEECCGG-------------GT----SCC-----------CTTGGGGCC--------TTEEEEEEESS-C
T ss_pred --------EEEeccCCC-------------CC----Ccc-----------HHHHHHhhC--------cCCeEEEECCC-C
Confidence 001111100 00 000 022333332 25778888876 7
Q ss_pred cCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC-Cccee--eehhccC-CCccchheeEeCH-
Q 005009 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIA--CYGKLLT-GGVIPLAATLATN- 705 (719)
Q Consensus 631 g~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv-~PDIv--tlgK~Lg-gG~~Plsavl~~~- 705 (719)
...|.+. |.+++++|.++|++||++||+||++++++++|+++.. ..++ ..|++ +++|.+| +| +++|++++++
T Consensus 185 nptG~~~-~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~-~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~ 261 (409)
T 2gb3_A 185 NPTGVVY-GKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASA-LSIESDKVVVIDSVSKKFSACG-ARVGCLITRNE 261 (409)
T ss_dssp TTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCG-GGSCCTTEEEEEESTTTTTCGG-GCCEEEECSCH
T ss_pred CCCCCCc-CHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCc-cccCCCCEEEEecchhccCCcc-ceEEEEEECcH
Confidence 8788764 6899999999999999999999999998887765543 2233 35776 7899998 78 7999999999
Q ss_pred HHHhhhc
Q 005009 706 AVFDSFV 712 (719)
Q Consensus 706 ~i~~~~~ 712 (719)
++++.+.
T Consensus 262 ~l~~~l~ 268 (409)
T 2gb3_A 262 ELISHAM 268 (409)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887653
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.5e-13 Score=145.55 Aligned_cols=219 Identities=14% Similarity=0.021 Sum_probs=144.7
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhccccc-CCCCCChHHHHHHHHHHhccCCC-CCCe-EEEeCChHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM-FPENVYEPALECAELLLQGVGKG-WASR-AYFSDNGSTAIEI 476 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~-~~~~~~~~~~~Lae~L~~~~~~~-~~~r-v~f~~SGsEA~E~ 476 (719)
.++||.+|.. .+| . +|++.+|+.++++...... ......+....+++.+.+..+.. ..++ ++++++|++|++.
T Consensus 27 ~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~ 102 (389)
T 1gd9_A 27 DVISLGIGEP--DFD-T-PQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLM 102 (389)
T ss_dssp SCEECCCCSC--SSC-C-CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHH
T ss_pred CeEecCCCCC--CCC-C-CHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHH
Confidence 6788887653 456 5 8999999999987632211 11122344555565555433410 1357 9999999999999
Q ss_pred HHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCccccc
Q 005009 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (719)
Q Consensus 477 AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (719)
+++.+. .. ..+|+..+.+|||....+ ...|..
T Consensus 103 ~~~~~~-----~~----------------gd~vl~~~~~~~~~~~~~-~~~g~~-------------------------- 134 (389)
T 1gd9_A 103 GLSAFL-----KD----------------GEEVLIPTPAFVSYAPAV-ILAGGK-------------------------- 134 (389)
T ss_dssp HHTTTC-----CT----------------TCEEEEEESCCTTHHHHH-HHHTCE--------------------------
T ss_pred HHHHhC-----CC----------------CCEEEEcCCCchhHHHHH-HHCCCE--------------------------
Confidence 998761 11 247999999999954332 222210
Q ss_pred CcceeecCcc--hhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCc
Q 005009 557 NSKWILSLPE--WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (719)
Q Consensus 557 ~~~~~~~~P~--~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG 634 (719)
...++... .+ . -| .+.+++.+. .++.+|+++.. +...|
T Consensus 135 --~~~v~~~~~~~~------------~---------~d--------~~~l~~~l~--------~~~~~v~~~~~-~nptG 174 (389)
T 1gd9_A 135 --PVEVPTYEEDEF------------R---------LN--------VDELKKYVT--------DKTRALIINSP-CNPTG 174 (389)
T ss_dssp --EEEEECCGGGTT------------C---------CC--------HHHHHHHCC--------TTEEEEEEESS-CTTTC
T ss_pred --EEEeccCCccCC------------C---------CC--------HHHHHHhcC--------cCceEEEEECC-CCCCC
Confidence 01111110 00 0 01 255666664 25678888775 77778
Q ss_pred cccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc-ccccccc-CC-Cccee--eehhccC-CCccchheeEeCHHHH
Q 005009 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLL-GC-VPDIA--CYGKLLT-GGVIPLAATLATNAVF 708 (719)
Q Consensus 635 ~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~-~~a~e~~-gv-~PDIv--tlgK~Lg-gG~~Plsavl~~~~i~ 708 (719)
.+ .|.+.+++|.++|++||+++|+||++++|.+.|+ ......+ +. ..|++ +++|.+| .| +++|+++++++++
T Consensus 175 ~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~ 252 (389)
T 1gd9_A 175 AV-LTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTG-WRLGFVAAPSWII 252 (389)
T ss_dssp CC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGG-GCCEEEECCHHHH
T ss_pred cC-CCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCcc-cceEEEEECHHHH
Confidence 76 4788999999999999999999999999988776 3333333 22 34644 7999998 78 7999999999998
Q ss_pred hhhc
Q 005009 709 DSFV 712 (719)
Q Consensus 709 ~~~~ 712 (719)
+.+.
T Consensus 253 ~~l~ 256 (389)
T 1gd9_A 253 ERMV 256 (389)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.8e-13 Score=151.78 Aligned_cols=183 Identities=12% Similarity=0.023 Sum_probs=115.5
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlK 479 (719)
.|||+.+++++ ++|.+++.+++..... .+ ...+...+|.++|+++++ .++++|++||+||++.|++
T Consensus 44 ~ylD~~~~~~~--------~~v~~a~~~~~~~~~~-~y--~~~~~~~~l~~~la~~~~---~~~v~~t~ggt~A~~~al~ 109 (467)
T 1ax4_A 44 VYIDLLTDSGT--------NAMSDHQWAAMITGDE-AY--AGSRNYYDLKDKAKELFN---YDYIIPAHQGRGAENILFP 109 (467)
T ss_dssp CSEECSCSSSC--------CCEEHHHHHHHHTCCC-CS--SSCHHHHHHHHHHHHHHC---CCEEEEESSHHHHHHHHHH
T ss_pred eeeecccCcCC--------HHHHHHHHHHHhhccc-cc--ccCccHHHHHHHHHHHcC---CCcEEEcCCcHHHHHHHHH
Confidence 89999887654 6778887777654221 11 124567899999999987 3689999999999999999
Q ss_pred HHHHHhhccccccccccCCCccccCcceEEEEEeCCcc-cCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCc
Q 005009 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYH-GDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (719)
Q Consensus 480 lA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syH-G~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 558 (719)
.+ +.+....|. .+..||.. .+| +.+..++..+|...... +...
T Consensus 110 ~~-~~~~~~~Gd-------------~~~~viv~--~~~~~~~~~~~~~~g~~~~~~----------------~~~~---- 153 (467)
T 1ax4_A 110 VL-LKYKQKEGK-------------AKNPVFIS--NFHFDTTAAHVELNGCKAINI----------------VTEK---- 153 (467)
T ss_dssp HH-HHHHHHTTC-------------CSSCEEEE--SSCCHHHHHHHHHTTCEEEEC----------------BCGG----
T ss_pred HH-HHhhccCCC-------------ccceEEEe--ccccchhhHHHhccCCceecc----------------cccc----
Confidence 98 443211221 01114444 555 65565665554321100 0000
Q ss_pred ceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccC
Q 005009 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (719)
Q Consensus 559 ~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~p 638 (719)
.++.... .+|+. .-| .+.|++.+.+ .+.+++++|++||+ ++.+|..++
T Consensus 154 ----~~~~~~~--------~~~~~-------~~d--------~~~le~~i~~----~~~~~~~~vi~~~~-~np~gG~~~ 201 (467)
T 1ax4_A 154 ----AFDSETY--------DDWKG-------DFD--------IKKLKENIAQ----HGADNIVAIVSTVT-CNSAGGQPV 201 (467)
T ss_dssp ----GGCTTSC--------CTTTT-------CBC--------HHHHHHHHHH----HCGGGEEEEEEESS-BTTTTSBCC
T ss_pred ----ccccccc--------CCccc-------ccC--------HHHHHHHHHh----cCCCCeeEEEEecc-ccCCCccCC
Confidence 0000000 00100 001 3567777763 11247999999998 888755677
Q ss_pred CHHHHHHHHHHHHhcCCcEEEecccc
Q 005009 639 DPLFQRILVKECQNRKIPVIFDEVFT 664 (719)
Q Consensus 639 p~~fl~~Lr~Lc~k~gilLI~DEVqT 664 (719)
+.+++++|+++|++||++||+||+|.
T Consensus 202 ~~~~l~~i~~la~~~gi~li~De~~~ 227 (467)
T 1ax4_A 202 SMSNLKEVYEIAKQHGIFVVMDSARF 227 (467)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEECTTH
T ss_pred ChhHHHHHHHHHHHcCCEEEEEchhh
Confidence 89999999999999999999999975
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=1e-13 Score=152.38 Aligned_cols=228 Identities=13% Similarity=0.113 Sum_probs=145.6
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhccc--ccC--CCCCChHHHHHHHHHHhccC---CCCCCeEEEeCChHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH--VMF--PENVYEPALECAELLLQGVG---KGWASRAYFSDNGST 472 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~--~~~--~~~~~~~~~~Lae~L~~~~~---~~~~~rv~f~~SGsE 472 (719)
.+|||.+|... ..||. +|+|.+|+.++++.... ..+ .....+...++++.+.+..+ -. .+.++|+++|++
T Consensus 44 ~~idl~~g~~~-~~~~~-~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~-~~~v~~t~G~~~ 120 (425)
T 1vp4_A 44 DAISFGGGVPD-PETFP-RKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLD-EDNLIFTVGSQQ 120 (425)
T ss_dssp TCEECCCCSCC-GGGSC-HHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCC-GGGEEEEEHHHH
T ss_pred CceeCCCCCCC-cccCC-HHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCC-cccEEEeccHHH
Confidence 78999998764 45899 99999999999876321 111 11223445555555544324 22 368999999999
Q ss_pred HHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCc
Q 005009 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (719)
Q Consensus 473 A~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (719)
|++.+++... .. ..+|++...+||+....+.. .|..
T Consensus 121 al~~~~~~l~-----~~----------------gd~Vl~~~p~y~~~~~~~~~-~g~~---------------------- 156 (425)
T 1vp4_A 121 ALDLIGKLFL-----DD----------------ESYCVLDDPAYLGAINAFRQ-YLAN---------------------- 156 (425)
T ss_dssp HHHHHHHHHC-----CT----------------TCEEEEEESCCHHHHHHHHT-TTCE----------------------
T ss_pred HHHHHHHHhC-----CC----------------CCEEEEeCCCcHHHHHHHHH-cCCE----------------------
Confidence 9999999761 11 24799999999986543322 1110
Q ss_pred ccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 005009 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (719)
Q Consensus 553 ~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~ 632 (719)
.+.+|. +. + .-| .+.+++.+.+......+.++++|++.|..+..
T Consensus 157 --------~~~v~~--------------~~-~-----~~d--------~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~np 200 (425)
T 1vp4_A 157 --------FVVVPL--------------ED-D-----GMD--------LNVLERKLSEFDKNGKIKQVKFIYVVSNFHNP 200 (425)
T ss_dssp --------EEEEEE--------------ET-T-----EEC--------HHHHHHHHHHHHHTTCGGGEEEEEEECSSCTT
T ss_pred --------EEEecc--------------CC-C-----CCC--------HHHHHHHHHhhhhcccCCCceEEEECCCCCCC
Confidence 011110 00 0 001 24455555420000012367787544332666
Q ss_pred CccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc-ccccccCCC---cceeeehhccCCCccchheeEeCHHHH
Q 005009 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCV---PDIACYGKLLTGGVIPLAATLATNAVF 708 (719)
Q Consensus 633 gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~-~a~e~~gv~---PDIvtlgK~LggG~~Plsavl~~~~i~ 708 (719)
.|.+ .|.+++++|.++|++||+++|+||++++|.+.|.. .....++.. ..+.+++|.+|+| +++|+++++++++
T Consensus 201 tG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~G-~r~G~~~~~~~~~ 278 (425)
T 1vp4_A 201 AGVT-TSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLAPG-LRIGMVAGSKEFI 278 (425)
T ss_dssp TCCC-CCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTCGG-GCEEEEECCHHHH
T ss_pred CCCc-CCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEeccccccccc-cceEEEeeCHHHH
Confidence 6765 47899999999999999999999999998877763 333333222 2345899999988 7999999999998
Q ss_pred hhhc
Q 005009 709 DSFV 712 (719)
Q Consensus 709 ~~~~ 712 (719)
+.+.
T Consensus 279 ~~l~ 282 (425)
T 1vp4_A 279 RKIV 282 (425)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.6e-13 Score=144.42 Aligned_cols=223 Identities=9% Similarity=-0.020 Sum_probs=154.0
Q ss_pred EEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEe
Q 005009 388 SVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFS 467 (719)
Q Consensus 388 ~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~ 467 (719)
++++.+|+ ++|||.++. ..++ . +|+|.+|+.++++... .+..+...+|.++|+++.+-. .+.++|+
T Consensus 9 ~~~~~~~~----~~i~l~~~~--~~~~-~-~~~v~~a~~~~~~~~~-----~y~~~~~~~l~~~la~~~~~~-~~~i~~~ 74 (354)
T 3ly1_A 9 AFTAPSTD----NPIRINFNE--NPLG-M-SPKAQAAARDAVVKAN-----RYAKNEILMLGNKLAAHHQVE-APSILLT 74 (354)
T ss_dssp CCCCCCSS----SCEECSSCC--CSSC-C-CHHHHHHHHHTGGGTT-----SCCHHHHHHHHHHHHHHTTSC-GGGEEEE
T ss_pred cccCCCCC----ceEEccCCC--CCCC-C-CHHHHHHHHHHHhhCc-----CCCCCchHHHHHHHHHHhCCC-hHHEEEe
Confidence 56788898 999999865 3444 5 8999999999987532 233456678999999988643 3689999
Q ss_pred CChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcc
Q 005009 468 DNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLF 547 (719)
Q Consensus 468 ~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~ 547 (719)
++|++|++.+++... +. ..+|+....+||+....+.. .|..
T Consensus 75 ~g~~~a~~~~~~~l~-----~~----------------gd~vl~~~~~~~~~~~~~~~-~g~~----------------- 115 (354)
T 3ly1_A 75 AGSSEGIRAAIEAYA-----SL----------------EAQLVIPELTYGDGEHFAKI-AGMK----------------- 115 (354)
T ss_dssp SHHHHHHHHHHHHHC-----CT----------------TCEEEEESSSCTHHHHHHHH-TTCE-----------------
T ss_pred CChHHHHHHHHHHHh-----CC----------------CCeEEECCCCchHHHHHHHH-cCCE-----------------
Confidence 999999999999761 11 24788888888885433221 1110
Q ss_pred cCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcc
Q 005009 548 LDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEP 627 (719)
Q Consensus 548 ~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEP 627 (719)
...++....+ .-| .+.+++.+.+ ..++.+|+++.
T Consensus 116 -----------~~~~~~~~~~---------------------~~d--------~~~l~~~l~~------~~~~~~v~l~~ 149 (354)
T 3ly1_A 116 -----------VTKVKMLDNW---------------------AFD--------IEGLKAAVAA------YSGPSIVYLVN 149 (354)
T ss_dssp -----------EEEECCCTTS---------------------CCC--------HHHHHHHHHT------CSSCEEEEEES
T ss_pred -----------EEEecCCCCC---------------------CCC--------HHHHHHHhcc------CCCCCEEEEeC
Confidence 0011111000 001 3567777762 13567777776
Q ss_pred ccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccc----ccc-CCCcceeeehhccC-CCccchhee
Q 005009 628 VVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA----DLL-GCVPDIACYGKLLT-GGVIPLAAT 701 (719)
Q Consensus 628 Viqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~----e~~-gv~PDIvtlgK~Lg-gG~~Plsav 701 (719)
. +...|.+. |.+.+++|.++| +||+++|+||++++|++.|..... ..+ +....+.+++|.+| .| +++|++
T Consensus 150 p-~nptG~~~-~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~ 225 (354)
T 3ly1_A 150 P-NNPTGTIT-PADVIEPWIASK-PANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAG-MRVGYA 225 (354)
T ss_dssp S-CTTTCCCC-CHHHHHHHHHTC-CTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGG-GCCEEE
T ss_pred C-CCCcCCCc-CHHHHHHHHHhC-CCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChh-hhheee
Confidence 5 77778766 566677777777 799999999999999887753221 222 33444558999998 78 799999
Q ss_pred EeCHHHHhhhcC
Q 005009 702 LATNAVFDSFVG 713 (719)
Q Consensus 702 l~~~~i~~~~~~ 713 (719)
++++++.+.+..
T Consensus 226 ~~~~~~~~~~~~ 237 (354)
T 3ly1_A 226 VAHPTVIALMGR 237 (354)
T ss_dssp ECCHHHHHHHGG
T ss_pred ecCHHHHHHHHH
Confidence 999999988764
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=99.48 E-value=3.7e-13 Score=144.83 Aligned_cols=215 Identities=13% Similarity=0.006 Sum_probs=141.8
Q ss_pred eeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhc------cCCCCCCeEEEeCChHHHHH
Q 005009 402 FDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG------VGKGWASRAYFSDNGSTAIE 475 (719)
Q Consensus 402 LD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~------~~~~~~~rv~f~~SGsEA~E 475 (719)
|||.++.. .+| . +|++.+|+.+++++..... ..+......+|.+.|+++ .+-. .+.++|+++|++|++
T Consensus 33 idl~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~~-~~y~~~~~~~l~~~la~~l~~~~g~~~~-~~~v~~~~G~~~al~ 106 (369)
T 3cq5_A 33 IRLNTNEN--PYP-P-SEALVADLVATVDKIATEL-NRYPERDAVELRDELAAYITKQTGVAVT-RDNLWAANGSNEILQ 106 (369)
T ss_dssp EECSSCCC--CSC-C-CHHHHHHHHHHHHHHGGGT-TSCCCTTCHHHHHHHHHHHHHHHCCCCC-GGGEEEESHHHHHHH
T ss_pred eeccCCCC--CCC-C-CHHHHHHHHHHHHhccccc-ccCCCccHHHHHHHHHHhhhhcccCCCC-hHhEEECCChHHHHH
Confidence 78877654 466 5 8999999999987642111 112222223566666665 3322 368999999999999
Q ss_pred HHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccc
Q 005009 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (719)
Q Consensus 476 ~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (719)
.+++... +. ..+|+....+||+....+.. .|..
T Consensus 107 ~~~~~l~-----~~----------------gd~Vl~~~~~y~~~~~~~~~-~g~~------------------------- 139 (369)
T 3cq5_A 107 QLLQAFG-----GP----------------GRTALGFQPSYSMHPILAKG-THTE------------------------- 139 (369)
T ss_dssp HHHHHHC-----ST----------------TCEEEEEESSCTHHHHHHHH-TTCE-------------------------
T ss_pred HHHHHhc-----CC----------------CCEEEEcCCChHHHHHHHHH-cCCE-------------------------
Confidence 9998771 11 24799999999986543222 1110
Q ss_pred cCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCcc
Q 005009 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (719)
Q Consensus 556 ~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~ 635 (719)
...++..+.+ . .| .+.+++.+.+ .++++|+++.. +...|.
T Consensus 140 ---~~~v~~~~~~------------~---------~d--------~~~l~~~i~~-------~~~~~v~~~~~-~nptG~ 179 (369)
T 3cq5_A 140 ---FIAVSRGADF------------R---------ID--------MDVALEEIRA-------KQPDIVFVTTP-NNPTGD 179 (369)
T ss_dssp ---EEEEECCTTS------------S---------CC--------HHHHHHHHHH-------HCCSEEEEESS-CTTTCC
T ss_pred ---EEEecCCcCC------------C---------CC--------HHHHHHHhhc-------cCCCEEEEeCC-CCCCCC
Confidence 0011111100 0 01 2456666652 14568888887 888898
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccc-cccC-CCcceeeehhccC-CCccchheeEeCHHHHhhhc
Q 005009 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA-DLLG-CVPDIACYGKLLT-GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 636 ~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~-e~~g-v~PDIvtlgK~Lg-gG~~Plsavl~~~~i~~~~~ 712 (719)
+.+ .++++++|+.+++++|+||++++|++....+.. +.++ ...++.+++|.+| +| +++|++++++++++.+.
T Consensus 180 ~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~ 254 (369)
T 3cq5_A 180 VTS----LDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAG-GRLGYFVANPAFIDAVM 254 (369)
T ss_dssp CCC----HHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTTSCGG-GCCEEEEECTHHHHHHH
T ss_pred CCC----HHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhcCCcc-cceEEEEeCHHHHHHHH
Confidence 876 677788888888999999999988764343332 3445 4566779999998 78 79999999999998876
Q ss_pred CC
Q 005009 713 GD 714 (719)
Q Consensus 713 ~~ 714 (719)
..
T Consensus 255 ~~ 256 (369)
T 3cq5_A 255 LV 256 (369)
T ss_dssp TT
T ss_pred Hc
Confidence 53
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=4.3e-13 Score=146.25 Aligned_cols=225 Identities=13% Similarity=-0.016 Sum_probs=147.6
Q ss_pred CCCCcccceeeecccccccc-CCCCCCCHHHHHHHHHhhhhcccc-cCCCCCChHHHHHHHHHHhccCCC-CCCeEEEeC
Q 005009 392 DQKNKFIGQQFDACASWWTQ-GPDATLQIELARDMGYTAARFGHV-MFPENVYEPALECAELLLQGVGKG-WASRAYFSD 468 (719)
Q Consensus 392 ~dG~~~~~~yLD~~sg~~~~-~lGH~~hP~V~~Av~~q~~~~~~~-~~~~~~~~~~~~Lae~L~~~~~~~-~~~rv~f~~ 468 (719)
.+|+ .+|||.++..+. .++ . +|++.+|+.++++..... .......+....+++.+.+..+-+ ..+.+++++
T Consensus 35 ~~g~----~~i~l~~~~~~~~~~~-~-~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~ 108 (406)
T 1xi9_A 35 KKGI----KVIRLNIGDPVKFDFQ-P-PEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTA 108 (406)
T ss_dssp HTTC----CCEECCCCCGGGTTCC-C-CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEES
T ss_pred HcCC----CEEEecCCCCCcCCCC-C-CHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcC
Confidence 3567 899998876543 456 4 799999999998763211 111112344555666665432211 136899999
Q ss_pred ChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCccc
Q 005009 469 NGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548 (719)
Q Consensus 469 SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~ 548 (719)
+|++|++.+++.+. +. ..+|+....+||+....+. ..|..
T Consensus 109 g~~~al~~~~~~l~-----~~----------------gd~Vl~~~~~~~~~~~~~~-~~g~~------------------ 148 (406)
T 1xi9_A 109 AVTEALQLIFGALL-----DP----------------GDEILVPGPSYPPYTGLVK-FYGGK------------------ 148 (406)
T ss_dssp HHHHHHHHHHHHHC-----CT----------------TCEEEEEESCCHHHHHHHH-HTTCE------------------
T ss_pred ChHHHHHHHHHHhC-----CC----------------CCEEEEcCCCCccHHHHHH-HcCCE------------------
Confidence 99999999999871 11 2479999999998543322 11110
Q ss_pred CCCcccccCcceeecCc--chhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEc
Q 005009 549 DPPTVFMYNSKWILSLP--EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIE 626 (719)
Q Consensus 549 ~~p~~~~~~~~~~~~~P--~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvE 626 (719)
...++.. +.+ . -| .+.+++.+. .++.+|+++
T Consensus 149 ----------~~~v~~~~~~~~------------~---------~d--------~~~l~~~l~--------~~~~~v~i~ 181 (406)
T 1xi9_A 149 ----------PVEYRTIEEEDW------------Q---------PD--------IDDIRKKIT--------DRTKAIAVI 181 (406)
T ss_dssp ----------EEEEEEEGGGTS------------E---------EC--------HHHHHHHCC--------TTEEEEEEE
T ss_pred ----------EEEeecCCCcCC------------c---------CC--------HHHHHHhhC--------cCceEEEEE
Confidence 0011111 000 0 01 255666664 257788888
Q ss_pred cccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCc-cee--eehhccC-CCccchheeE
Q 005009 627 PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVP-DIA--CYGKLLT-GGVIPLAATL 702 (719)
Q Consensus 627 PViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~P-DIv--tlgK~Lg-gG~~Plsavl 702 (719)
.. +...|.+ .|++++++|.++|++||+++|+||++++|++.|.......++-.- |++ +++|.+| .| +++|+++
T Consensus 182 ~p-~nptG~~-~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~ 258 (406)
T 1xi9_A 182 NP-NNPTGAL-YDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATG-WRLGYMY 258 (406)
T ss_dssp SS-CTTTCCC-CCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGG-GCCEEEE
T ss_pred CC-CCCCCCC-cCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcCCCceEEEEeccccccCCCc-cEEEEEE
Confidence 76 7888876 478999999999999999999999999987755555555554111 454 5799998 68 7999999
Q ss_pred --eCH----HHHhhhc
Q 005009 703 --ATN----AVFDSFV 712 (719)
Q Consensus 703 --~~~----~i~~~~~ 712 (719)
+++ ++++.+.
T Consensus 259 ~~~~~~~~~~l~~~l~ 274 (406)
T 1xi9_A 259 FVDPENKLSEVREAID 274 (406)
T ss_dssp EECTTCTTHHHHHHHH
T ss_pred EecCchhHHHHHHHHH
Confidence 888 8887653
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-13 Score=147.87 Aligned_cols=179 Identities=15% Similarity=0.091 Sum_probs=129.4
Q ss_pred HHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccc
Q 005009 445 ALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM 524 (719)
Q Consensus 445 ~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~gal 524 (719)
..+|.+.|+++...-..+.+++++||++|++.+++... +. ..+|++...+||+.....
T Consensus 65 ~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~-----~~----------------gd~Vl~~~~~~~~~~~~~- 122 (375)
T 3op7_A 65 SPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLI-----EP----------------GDHVISLYPTYQQLYDIP- 122 (375)
T ss_dssp CHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHC-----CT----------------TCEEEEEESSCTHHHHHH-
T ss_pred hHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhc-----CC----------------CCEEEEeCCCchhHHHHH-
Confidence 35788888887532114689999999999999999761 11 247999999999844322
Q ss_pred cccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCc--chhhhcccccccccccCccchhhcccCchhHHHHHHH
Q 005009 525 EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP--EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSS 602 (719)
Q Consensus 525 slt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P--~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~ 602 (719)
...|.. ...++.+ +.| + -| .+
T Consensus 123 ~~~g~~----------------------------~~~v~~~~~~~~------------~---------~d--------~~ 145 (375)
T 3op7_A 123 KSLGAE----------------------------VDLWQIEEENGW------------L---------PD--------LE 145 (375)
T ss_dssp HHTTCE----------------------------EEEEEEEGGGTT------------E---------EC--------HH
T ss_pred HHcCCE----------------------------EEEEeccccCCC------------C---------CC--------HH
Confidence 211110 0011111 000 0 01 25
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCc
Q 005009 603 YISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVP 682 (719)
Q Consensus 603 ~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~P 682 (719)
.+++.+. .++.+|++++. ++..|... |.+++++|.++|++||+++|+||++++|++.+.....+.++..+
T Consensus 146 ~l~~~l~--------~~~~~v~~~~~-~nptG~~~-~~~~l~~i~~la~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i 215 (375)
T 3op7_A 146 KLRQLIR--------PTTKMICINNA-NNPTGAVM-DRTYLEELVEIASEVGAYILSDEVYRSFSELDVPSIIEVYDKGI 215 (375)
T ss_dssp HHHHHCC--------TTCCEEEEESS-CTTTCCCC-CHHHHHHHHHHHHTTTCEEEEECCSCCCSSSCCCCHHHHCTTEE
T ss_pred HHHHhhc--------cCCeEEEEcCC-CCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEcccccccccCCCchhhhcCCEE
Confidence 5666664 35678899987 88888765 78899999999999999999999999998875555566677788
Q ss_pred ceeeehhccC-CCccchheeEeCHHHHhhhcC
Q 005009 683 DIACYGKLLT-GGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 683 DIvtlgK~Lg-gG~~Plsavl~~~~i~~~~~~ 713 (719)
++.+++|.+| +| +++|++++++++++.+..
T Consensus 216 ~~~s~sK~~~~~G-~r~G~v~~~~~l~~~~~~ 246 (375)
T 3op7_A 216 AVNSLSKTYSLPG-IRIGWVAANHQVTDILRD 246 (375)
T ss_dssp EEEESSSSSSCGG-GCCEEEECCHHHHHHHTT
T ss_pred EEeEChhhcCCcc-cceEEEEeCHHHHHHHHH
Confidence 8999999998 78 799999999999988754
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=4.6e-14 Score=156.59 Aligned_cols=222 Identities=12% Similarity=0.012 Sum_probs=129.6
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlK 479 (719)
.|||+.++.++ |+|.+|+.+++..... . ....+...+|.++|+++++ .++++|++||+||++.|++
T Consensus 42 ~ylD~~~~~~~--------~~v~~a~~~~l~~~~~-~--y~~~~~~~~l~~~la~~~~---~~~v~~t~~gt~A~~~al~ 107 (467)
T 2oqx_A 42 VFIDLLTDSGT--------GAVTQSMQAAMMRGDE-A--YSGSRSYYALAESVKNIFG---YQYTIPTHQGRGAEQIYIP 107 (467)
T ss_dssp CSEECSCCSSC--------SCCCHHHHHHTTSCCC-C--SSSCHHHHHHHHHHHHHHC---CSEEEEEC--CCSHHHHHH
T ss_pred eeEecccCCCc--------HHHHHHHHHHhccCcc-e--eccCchhHHHHHHHHHHhC---cCcEEEcCCcHHHHHHHHH
Confidence 89999886654 7888999888754221 1 1124567799999999987 4799999999999999999
Q ss_pred HHHHHhh-ccccccccccCCCccccCcceEEEEEeCCcccCcccccccc-CCCCCCCCCCCCCccCCCcccCCCcccccC
Q 005009 480 MAFRKFS-FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQ-APSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (719)
Q Consensus 480 lA~r~~~-~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (719)
++ +..+ ..+|. +++..||.. .||+.|..+.... +....... .
T Consensus 108 ~~-~~~~~~~~G~------------~~~d~Ii~~--~~h~~t~~~~~~~~~~~~~~~~----------------~----- 151 (467)
T 2oqx_A 108 VL-IKKREQEKGL------------DRSKMVAFS--NYFFDTTQGHSQINGCTVRNVY----------------I----- 151 (467)
T ss_dssp HH-HHHHHHHHCC------------CTTTCEEEE--SSCCHHHHHHHHHTTCEEEECB----------------C-----
T ss_pred HH-hccccccCCC------------CccceEEec--ccccccchhhhhccCcceeecc----------------c-----
Confidence 99 4331 11120 111246654 6998764443322 11100000 0
Q ss_pred cceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCcccc
Q 005009 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (719)
Q Consensus 558 ~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~ 637 (719)
...+|.... .+++. .-| .+.|++.+.+ .+.+++++|++|++ ++.+|..+
T Consensus 152 ---~~~~~~~~~--------~~~~~-------~~d--------~~~Le~~i~~----~~~~~~~~vi~~~~-~n~~gG~~ 200 (467)
T 2oqx_A 152 ---KEAFDTGVR--------YDFKG-------NFD--------LEGLERGIEE----VGPNNVPYIVATIT-SNSAGGQP 200 (467)
T ss_dssp ---TTTTCTTSC--------CTTTT-------CBC--------HHHHHHHHHH----HCGGGCCCEEEESS-BCGGGCBC
T ss_pred ---cccccCCCC--------CCccC-------CcC--------HHHHHHHHHh----cCCCceeEEEEecc-ccCCCCcc
Confidence 000000000 00000 001 3567777763 11247899999997 88765567
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEeccccC----------ccccCc---cccccccCCCcce--eeehhccCCCccchhee-
Q 005009 638 VDPLFQRILVKECQNRKIPVIFDEVFTG----------FWRLGV---ETTADLLGCVPDI--ACYGKLLTGGVIPLAAT- 701 (719)
Q Consensus 638 pp~~fl~~Lr~Lc~k~gilLI~DEVqTG----------fGRtG~---~~a~e~~gv~PDI--vtlgK~LggG~~Plsav- 701 (719)
++.+++++|+++|++||++||+|++|.. .+.+|. .++.+.+ -.+|+ .+++|++| +|+|++
T Consensus 201 ~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~~s~sK~~g---~~~Gg~~ 276 (467)
T 2oqx_A 201 VSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETY-KYADMLAMSAKKDAM---VPMGGLL 276 (467)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHG-GGCSEEEEESSSTTC---CSSCEEE
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhh-ccCCeEEEecccccC---CCCceEE
Confidence 7899999999999999999999976642 133333 3321100 11454 57889885 355554
Q ss_pred EeCHH
Q 005009 702 LATNA 706 (719)
Q Consensus 702 l~~~~ 706 (719)
+++++
T Consensus 277 ~~~~~ 281 (467)
T 2oqx_A 277 CMKDD 281 (467)
T ss_dssp EECSG
T ss_pred EecCh
Confidence 45555
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=5.2e-13 Score=141.58 Aligned_cols=210 Identities=13% Similarity=0.014 Sum_probs=139.6
Q ss_pred CCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccc
Q 005009 412 GPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEV 491 (719)
Q Consensus 412 ~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~ 491 (719)
..|+. +|++.+|+.+++..+... ....+...+++++|++..+.+ .++++|+++|++|++.+++.++ +.
T Consensus 22 ~~~~~-~~~v~~a~~~~~~~~~~~---~g~~~~~~~~~~~l~~~~g~~-~~~v~~~~g~t~a~~~~~~~~~-----~~-- 89 (359)
T 1svv_A 22 YSVGM-HPKILDLMARDNMTQHAG---YGQDSHCAKAARLIGELLERP-DADVHFISGGTQTNLIACSLAL-----RP-- 89 (359)
T ss_dssp CSSCC-CHHHHHHHHHHTTCCCCS---TTCSHHHHHHHHHHHHHHTCT-TSEEEEESCHHHHHHHHHHHHC-----CT--
T ss_pred CcCCC-CHHHHHHHHHHHhhcccc---ccccHHHHHHHHHHHHHhCCC-CccEEEeCCchHHHHHHHHHHh-----CC--
Confidence 46788 999999999999864432 245778889999999987743 4689999999999999999882 11
Q ss_pred cccccCCCccccCcceEEEEEeCCcccCccc-cccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhh
Q 005009 492 LVDFLGKDTTEKCIELKVLALKGSYHGDTLG-AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYS 570 (719)
Q Consensus 492 ~~~~~~~~~~~~~~r~kII~~~~syHG~t~g-alslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~ 570 (719)
..+|+....+||+.... .+...|.. ...++.+ .+
T Consensus 90 --------------gd~vl~~~~~~~~~~~~~~~~~~g~~----------------------------~~~v~~~-~~-- 124 (359)
T 1svv_A 90 --------------WEAVIATQLGHISTHETGAIEATGHK----------------------------VVTAPCP-DG-- 124 (359)
T ss_dssp --------------TEEEEEETTSHHHHSSTTHHHHTTCC----------------------------EEEECCT-TS--
T ss_pred --------------CCEEEEcccchHHHHHHHHHhcCCCe----------------------------eEEEeCC-CC--
Confidence 24789999999985442 11111100 0111111 00
Q ss_pred cccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHH
Q 005009 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650 (719)
Q Consensus 571 ~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc 650 (719)
.-| .+.+++.+.+.. ..++.++++|++++. . ..|.+. |.+++++|.++|
T Consensus 125 -------------------~~d--------~~~l~~~l~~~~-~~~~~~~~~v~~~~~-~-ptG~~~-~~~~l~~i~~~~ 173 (359)
T 1svv_A 125 -------------------KLR--------VADIESALHENR-SEHMVIPKLVYISNT-T-EVGTQY-TKQELEDISASC 173 (359)
T ss_dssp -------------------CCC--------HHHHHHHHHHSC-STTSCEEEEEEEESS-C-TTSCCC-CHHHHHHHHHHH
T ss_pred -------------------eec--------HHHHHHHHHHHH-hccCCCceEEEEEcC-C-CCceec-CHHHHHHHHHHH
Confidence 001 255667776410 012346889999985 4 567765 479999999999
Q ss_pred HhcCCcEEEeccccCc--cccCccccccccCCCcceeee--hhccCCCccchheeEeCHHHHhhh
Q 005009 651 QNRKIPVIFDEVFTGF--WRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 651 ~k~gilLI~DEVqTGf--GRtG~~~a~e~~gv~PDIvtl--gK~LggG~~Plsavl~~~~i~~~~ 711 (719)
++||+++|+||++++| |+++.....-..+..+|++++ .|. ||...+|++++++++++.+
T Consensus 174 ~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~--g~~~~~g~l~~~~~~~~~~ 236 (359)
T 1svv_A 174 KEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKA--GGMFGEALIILNDALKPNA 236 (359)
T ss_dssp HHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTT--TCSSCEEEEECSGGGCTTH
T ss_pred HHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccC--CCCCceEEEEEcccHHHHH
Confidence 9999999999999776 666542211111135788764 674 4434567888898887655
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=8.6e-13 Score=143.15 Aligned_cols=221 Identities=13% Similarity=0.044 Sum_probs=142.4
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccC-CCCCChHHHHHHHHHHhccCCC-CCCeEEEeCChHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF-PENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIA 477 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~-~~~~~~~~~~Lae~L~~~~~~~-~~~rv~f~~SGsEA~E~A 477 (719)
.+|||.++.. .+|+ +|.+.+|+.++++....... .....+....+++.+.+..+-. ..+.++++++|++|++.+
T Consensus 42 ~~i~l~~~~~--~~~~--~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~~ 117 (389)
T 1o4s_A 42 DVINLTAGEP--DFPT--PEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNA 117 (389)
T ss_dssp CCEECCCSSC--SSCC--CHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHH
T ss_pred CEEEccCCCC--CCCC--CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHHHH
Confidence 8999988764 4664 69999999999876321110 1112334445555554432311 136899999999999999
Q ss_pred HHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccC
Q 005009 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (719)
Q Consensus 478 lKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (719)
++.+. .. ..+|+....+||+....+ ...|..
T Consensus 118 ~~~l~-----~~----------------gd~Vl~~~~~~~~~~~~~-~~~g~~--------------------------- 148 (389)
T 1o4s_A 118 FMALL-----DP----------------GDEVIVFSPVWVSYIPQI-ILAGGT--------------------------- 148 (389)
T ss_dssp HHHHC-----CT----------------TCEEEEEESCCTTHHHHH-HHTTCE---------------------------
T ss_pred HHHhC-----CC----------------CCEEEEcCCCchhHHHHH-HHcCCE---------------------------
Confidence 99871 11 247999999999854332 222110
Q ss_pred cceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCcccc
Q 005009 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (719)
Q Consensus 558 ~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~ 637 (719)
...++....- .|. -| .+.+++.+. .++.+|+++.. +...|.+
T Consensus 149 -~~~v~~~~~~----------~~~---------~d--------~~~l~~~l~--------~~~~~v~~~~p-~nptG~~- 190 (389)
T 1o4s_A 149 -VNVVETFMSK----------NFQ---------PS--------LEEVEGLLV--------GKTKAVLINSP-NNPTGVV- 190 (389)
T ss_dssp -EEEEECCGGG----------TTC---------CC--------HHHHHHTCC--------TTEEEEEEESS-CTTTCCC-
T ss_pred -EEEEecCCcc----------CCC---------CC--------HHHHHHhcc--------cCceEEEEcCC-CCCCCCC-
Confidence 0011111000 000 01 245665553 25678888876 7777875
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC--Ccce--eeehhccC-CCccchheeEeCHHHHhhhc
Q 005009 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC--VPDI--ACYGKLLT-GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 638 pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv--~PDI--vtlgK~Lg-gG~~Plsavl~~~~i~~~~~ 712 (719)
.|.+++++|.++|++||+++|+||++++|...|+......+.- ..|+ .+++|.+| .| +++|++++++++++.+.
T Consensus 191 ~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~l~~~~~~~~~l~ 269 (389)
T 1o4s_A 191 YRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTG-WRVGYLISSEKVATAVS 269 (389)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGG-GCCEEEECCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcCCcc-cceEEEEeCHHHHHHHH
Confidence 4789999999999999999999999999877775433333321 2354 47999998 78 79999999999887653
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=7.2e-13 Score=142.87 Aligned_cols=212 Identities=8% Similarity=-0.053 Sum_probs=141.1
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhccccc-CCC-----CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM-FPE-----NVYEPALECAELLLQGVGKGWASRAYFSDNGSTA 473 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~-~~~-----~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA 473 (719)
.|||..+ .|+. +|++.+|+.++++...... ... ...+...++.++|+++++....+.++|+++|++|
T Consensus 25 i~l~~~~------~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a 97 (406)
T 1kmj_A 25 AYLDSAA------SAQK-PSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEG 97 (406)
T ss_dssp EECCTTT------CCCC-CHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHH
T ss_pred EEecCCc------cCCC-CHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHH
Confidence 4566443 3578 9999999999998753110 000 0245567899999998874113689999999999
Q ss_pred HHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCcccccccc---CCCCCCCCCCCCCccCCCcccCC
Q 005009 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQ---APSPYTGFLQQPWYSGRGLFLDP 550 (719)
Q Consensus 474 ~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt---~~~~~~~~~~~~~~~~~~~~~~~ 550 (719)
++.+++.+ +.+.... ..+|+....+|||.......+. |..
T Consensus 98 ~~~~~~~~-~~~~~~~----------------gd~vl~~~~~~~~~~~~~~~~~~~~g~~-------------------- 140 (406)
T 1kmj_A 98 INLVANSW-GNSNVRA----------------GDNIIISQMEHHANIVPWQMLCARVGAE-------------------- 140 (406)
T ss_dssp HHHHHHHT-HHHHCCT----------------TCEEEEETTCCGGGTHHHHHHHHHHTCE--------------------
T ss_pred HHHHHHHh-hhhcCCC----------------CCEEEEecccchHHHHHHHHHHHhCCCE--------------------
Confidence 99999988 3321111 2479999999998654322211 110
Q ss_pred CcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc
Q 005009 551 PTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630 (719)
Q Consensus 551 p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViq 630 (719)
...++.+..+ ..| .+.+++.+. .++++|+++++ +
T Consensus 141 --------~~~~~~~~~~-----------~~d------------------~~~l~~~l~--------~~~~~v~~~~~-~ 174 (406)
T 1kmj_A 141 --------LRVIPLNPDG-----------TLQ------------------LETLPTLFD--------EKTRLLAITHV-S 174 (406)
T ss_dssp --------EEEECBCTTS-----------CBC------------------GGGHHHHCC--------TTEEEEEEESB-C
T ss_pred --------EEEEecCCCC-----------CcC------------------HHHHHHHhc--------cCCeEEEEeCC-C
Confidence 0111111100 011 134555553 36789999997 9
Q ss_pred cCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee--eehhccCCCccchheeEeCHHHH
Q 005009 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVF 708 (719)
Q Consensus 631 g~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlgK~LggG~~Plsavl~~~~i~ 708 (719)
+..|.+.+ +++|.++|++||+++|+||+++ +|+.. +.... ..+|++ +++|.+|. ..+|+++++++++
T Consensus 175 nptG~~~~----l~~i~~l~~~~~~~li~D~~~~-~g~~~--~~~~~--~~~d~~~~s~~K~~g~--~G~G~~~~~~~~~ 243 (406)
T 1kmj_A 175 NVLGTENP----LAEMITLAHQHGAKVLVDGAQA-VMHHP--VDVQA--LDCDFYVFSGHKLYGP--TGIGILYVKEALL 243 (406)
T ss_dssp TTTCCBCC----HHHHHHHHHHTTCEEEEECTTT-TTTSC--CCHHH--HTCSEEEEEGGGTTSC--TTCEEEEECHHHH
T ss_pred ccccCcCC----HHHHHHHHHHcCCEEEEEchhh-cCCCC--Ccccc--cCCCEEEEEchhccCC--CCcEEEEEeHHHH
Confidence 99999887 9999999999999999999996 44432 22222 358987 59999843 2379999999998
Q ss_pred hhhc
Q 005009 709 DSFV 712 (719)
Q Consensus 709 ~~~~ 712 (719)
+.+.
T Consensus 244 ~~~~ 247 (406)
T 1kmj_A 244 QEMP 247 (406)
T ss_dssp HHCC
T ss_pred hhcC
Confidence 8764
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1e-12 Score=144.86 Aligned_cols=227 Identities=14% Similarity=0.031 Sum_probs=147.3
Q ss_pred EeCCCCcccceeeecccccccc-CCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCC----CCCeE
Q 005009 390 YQDQKNKFIGQQFDACASWWTQ-GPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG----WASRA 464 (719)
Q Consensus 390 ~D~dG~~~~~~yLD~~sg~~~~-~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~----~~~rv 464 (719)
.+.+|+ .+||+..|.... +-... +|+|.+|+.++++....... .......+|.+.|+++++.. ..+++
T Consensus 49 ~~~~~~----~~i~l~~g~~~~~g~~~~-~~~v~~a~~~~~~~~~~~~y--~~~~g~~~lr~~la~~~~~~~~~~~~~~v 121 (427)
T 3dyd_A 49 KPNPNK----TMISLSIGDPTVFGNLPT-DPEVTQAMKDALDSGKYNGY--APSIGFLSSREEIASYYHCPEAPLEAKDV 121 (427)
T ss_dssp CCCTTS----CCEECCCSCTTTTSSSCC-CHHHHHHHHHHHHHCCSSSC--CCTTCCHHHHHHHHHHHCBTTBCCCGGGE
T ss_pred cccCCC----CEEeCCCcCCCccCCCCC-CHHHHHHHHHHHhcCcCCCC--CCCCCcHHHHHHHHHHHhhcCCCCChHHE
Confidence 345577 899999987432 23456 89999999999886422111 01222345666666655410 13689
Q ss_pred EEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCC
Q 005009 465 YFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGR 544 (719)
Q Consensus 465 ~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~ 544 (719)
+++++|++|++.+++.+. +. ..+|+....+|++....+.... ..
T Consensus 122 ~~t~g~t~al~~~~~~l~-----~~----------------gd~vl~~~p~~~~~~~~~~~~g-~~-------------- 165 (427)
T 3dyd_A 122 ILTSGCSQAIDLCLAVLA-----NP----------------GQNILVPRPGFSLYKTLAESMG-IE-------------- 165 (427)
T ss_dssp EEESSHHHHHHHHHHHHC-----CT----------------TCEEEEEESCCTHHHHHHHHTT-CE--------------
T ss_pred EEecCcHHHHHHHHHHhc-----CC----------------CCEEEEcCCCchhHHHHHHHcC-CE--------------
Confidence 999999999999999872 11 2478999999998554332221 10
Q ss_pred CcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEE
Q 005009 545 GLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALI 624 (719)
Q Consensus 545 ~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI 624 (719)
.+.+|.... ++ + .-| .+.+++.+. .+..+|+
T Consensus 166 ----------------~~~~~~~~~-----------~~----~--~~d--------~~~l~~~l~--------~~~~~v~ 196 (427)
T 3dyd_A 166 ----------------VKLYNLLPE-----------KS----W--EID--------LKQLEYLID--------EKTACLI 196 (427)
T ss_dssp ----------------EEEEEEEGG-----------GT----T--EEC--------HHHHHSSCC--------TTEEEEE
T ss_pred ----------------EEEEecccc-----------cC----C--CCC--------HHHHHHHhc--------cCCCEEE
Confidence 011110000 00 0 001 244554443 2345555
Q ss_pred EccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc-cccccCCCccee---eehhccC-CCccchh
Q 005009 625 IEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPDIA---CYGKLLT-GGVIPLA 699 (719)
Q Consensus 625 vEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~-a~e~~gv~PDIv---tlgK~Lg-gG~~Pls 699 (719)
+... +...|.+. |++.+++|.++|++||+++|+||++++|+++|..+ ....++..++++ +++|.++ .| +++|
T Consensus 197 i~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~~~G-~riG 273 (427)
T 3dyd_A 197 VNNP-SNPCGSVF-SKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVPG-WRLG 273 (427)
T ss_dssp EESS-CTTTCCCC-CHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTTTSSCGG-GCCE
T ss_pred EECC-CCCCCCCC-CHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccccCCCcC-cceE
Confidence 5554 78888754 78899999999999999999999999999998744 556667777777 8999965 47 7999
Q ss_pred eeEeC-------HHHHhhh
Q 005009 700 ATLAT-------NAVFDSF 711 (719)
Q Consensus 700 avl~~-------~~i~~~~ 711 (719)
+++++ +++.+.+
T Consensus 274 ~~~~~~~~~~~~~~i~~~l 292 (427)
T 3dyd_A 274 WILIHDRRDIFGNEIRDGL 292 (427)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEecCcchhhHHHHHHHH
Confidence 99987 4666544
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=4.3e-13 Score=145.68 Aligned_cols=230 Identities=10% Similarity=0.025 Sum_probs=143.2
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCC--CCCChHHHHHHHHHHhccCCCC-C-CeEEEeCChHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFP--ENVYEPALECAELLLQGVGKGW-A-SRAYFSDNGSTAIE 475 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~--~~~~~~~~~Lae~L~~~~~~~~-~-~rv~f~~SGsEA~E 475 (719)
.+|||..|.. .++ . +|+|.+|+++++......... ....+....+++.+.+..+... - +.++|+++|++|++
T Consensus 24 ~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~ 99 (410)
T 3e2y_A 24 SVVNLGQGFP--DIS-P-PSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLF 99 (410)
T ss_dssp TSEECSSCCC--CSC-C-CHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHH
T ss_pred CeEEecCCCC--CCC-C-CHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHH
Confidence 5777777542 233 4 899999999998754221111 1123445566666655332210 2 58999999999999
Q ss_pred HHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccc
Q 005009 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (719)
Q Consensus 476 ~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (719)
.+++.+. .. ..+|+....+||+..... ...|...
T Consensus 100 ~~~~~~~-----~~----------------gd~vl~~~p~~~~~~~~~-~~~g~~~------------------------ 133 (410)
T 3e2y_A 100 NSIQGLV-----DP----------------GDEVIIMVPFYDCYEPMV-RMAGAVP------------------------ 133 (410)
T ss_dssp HHHHHHC-----CT----------------TCEEEEEESCCTTHHHHH-HHTTCEE------------------------
T ss_pred HHHHHhc-----CC----------------CCEEEEeCCCchhhHHHH-HHcCCEE------------------------
Confidence 9999871 11 247899999998754332 2222110
Q ss_pred cCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCcc
Q 005009 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (719)
Q Consensus 556 ~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~ 635 (719)
..++....... . ....+..+ .-| .+.+++.+. .++.+|+++.. +...|.
T Consensus 134 ----~~~~~~~~~~~--g------~~~~~~~~--~~d--------~~~l~~~~~--------~~~~~v~~~~p-~nptG~ 182 (410)
T 3e2y_A 134 ----VFIPLRSKPTD--G------MKWTSSDW--TFD--------PRELESKFS--------SKTKAIILNTP-HNPLGK 182 (410)
T ss_dssp ----EEEECEECCCC--S------SCCBGGGE--ECC--------HHHHHTTCC--------TTEEEEEEESS-CTTTCC
T ss_pred ----EEEeccccccc--c------ccccccCC--cCC--------HHHHHhhcC--------CCceEEEEeCC-CCCCCc
Confidence 00111000000 0 00000000 001 244554442 36888899986 888888
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc-cccccC----CCcceeeehhccC-CCccchheeEeCHHHHh
Q 005009 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLG----CVPDIACYGKLLT-GGVIPLAATLATNAVFD 709 (719)
Q Consensus 636 ~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~-a~e~~g----v~PDIvtlgK~Lg-gG~~Plsavl~~~~i~~ 709 (719)
+. +++.+++|.++|++||+++|+||++++|+++|+.+ ....+. ...++.+++|.+| .| +++|++++++++++
T Consensus 183 ~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G-~r~G~~~~~~~~~~ 260 (410)
T 3e2y_A 183 VY-TRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTG-WKLGWSIGPAHLIK 260 (410)
T ss_dssp CC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGG-GCCEEEECCHHHHH
T ss_pred Cc-CHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCC-ceEEEEEECHHHHH
Confidence 66 77889999999999999999999999999888632 333332 2244457899998 78 79999999999988
Q ss_pred hhc
Q 005009 710 SFV 712 (719)
Q Consensus 710 ~~~ 712 (719)
.+.
T Consensus 261 ~~~ 263 (410)
T 3e2y_A 261 HLQ 263 (410)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=9.2e-13 Score=143.81 Aligned_cols=229 Identities=12% Similarity=0.064 Sum_probs=145.4
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcc---cccCCCCCChHHHHHHHHHHhccCCCC-C-CeEEEeCChHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG---HVMFPENVYEPALECAELLLQGVGKGW-A-SRAYFSDNGSTAI 474 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~---~~~~~~~~~~~~~~Lae~L~~~~~~~~-~-~rv~f~~SGsEA~ 474 (719)
.+|||..|.. .++ . +|+|.+|+++++.... .........+....+++.+.+..+... - +.++|+++|++|+
T Consensus 29 ~~i~l~~g~~--~~~-~-~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~ 104 (422)
T 3fvs_A 29 DVVNLGQGFP--DFP-P-PDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGAL 104 (422)
T ss_dssp CCEECCCSSC--SSC-C-CHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHH
T ss_pred CceEeCCCCC--CCC-C-CHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHH
Confidence 6788877652 333 5 8999999999987632 111111233556667777766443211 1 4799999999999
Q ss_pred HHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCccc
Q 005009 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (719)
Q Consensus 475 E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~ 554 (719)
+.+++.+. .. ..+|+....+||+....... .|...
T Consensus 105 ~~~~~~~~-----~~----------------gd~vl~~~p~~~~~~~~~~~-~g~~~----------------------- 139 (422)
T 3fvs_A 105 FTAFQALV-----DE----------------GDEVIIIEPFFDCYEPMTMM-AGGRP----------------------- 139 (422)
T ss_dssp HHHHHHHC-----CT----------------TCEEEEEESCCTTHHHHHHH-TTCEE-----------------------
T ss_pred HHHHHHHc-----CC----------------CCEEEEcCCCchhhHHHHHH-cCCEE-----------------------
Confidence 99999871 11 24799999999985433222 22110
Q ss_pred ccCcceeecCcch--hhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 005009 555 MYNSKWILSLPEW--LYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (719)
Q Consensus 555 ~~~~~~~~~~P~~--~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~ 632 (719)
..++.... ..+ .. .. +..+ .-| .+.+++.+. .++.+|+++.. +..
T Consensus 140 -----~~~~~~~~~~~~G------~~-~~--~~~~--~~d--------~~~l~~~~~--------~~~~~v~~~~p-~np 186 (422)
T 3fvs_A 140 -----VFVSLKPGPIQNG------EL-GS--SSNW--QLD--------PMELAGKFT--------SRTKALVLNTP-NNP 186 (422)
T ss_dssp -----EEEECBCCCCCSS------SC-CB--GGGS--BCC--------HHHHHTTCC--------TTEEEEEEESS-CTT
T ss_pred -----EEEeccccccccc------cc-cc--ccCC--CCC--------HHHHHhhcC--------CCceEEEECCC-CCC
Confidence 00110000 000 00 00 0000 001 244554442 36788888876 888
Q ss_pred CccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc-cccccc----CCCcceeeehhccC-CCccchheeEeCHH
Q 005009 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLL----GCVPDIACYGKLLT-GGVIPLAATLATNA 706 (719)
Q Consensus 633 gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~-~a~e~~----gv~PDIvtlgK~Lg-gG~~Plsavl~~~~ 706 (719)
.|.+. |.+.+++|.++|++||+++|+||++++|+++|+. .....+ +...++.+++|.+| .| +++|+++++++
T Consensus 187 tG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G-~r~G~~~~~~~ 264 (422)
T 3fvs_A 187 LGKVF-SREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATG-WKVGWVLGPDH 264 (422)
T ss_dssp TCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCGG-GCCEEEECCHH
T ss_pred CCcCC-CHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCCcc-ceEEEEEeCHH
Confidence 88876 7889999999999999999999999999888863 233222 22344558899998 78 79999999999
Q ss_pred HHhhhc
Q 005009 707 VFDSFV 712 (719)
Q Consensus 707 i~~~~~ 712 (719)
+++.+.
T Consensus 265 ~~~~~~ 270 (422)
T 3fvs_A 265 IMKHLR 270 (422)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887764
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.45 E-value=7.9e-13 Score=141.41 Aligned_cols=212 Identities=9% Similarity=0.003 Sum_probs=142.9
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlK 479 (719)
.+|||.++.. .++ . +|+|.+|+.++++.+.. +..+...++.++|+++++-. .+.++|+++|++|++.+++
T Consensus 33 ~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~-----y~~~~~~~lr~~la~~~~~~-~~~v~~~~g~t~a~~~~~~ 102 (363)
T 3ffh_A 33 KITKLSSNEN--PLG-T-SKKVAAIQANSSVETEI-----YPDGWASSLRKEVADFYQLE-EEELIFTAGVDELIELLTR 102 (363)
T ss_dssp CCEECSSCSC--TTC-C-CHHHHHHHHTCBSCCCB-----C----CHHHHHHHHHHHTCC-GGGEEEESSHHHHHHHHHH
T ss_pred ceEEccCCCC--CCC-C-CHHHHHHHHHHHHHhhc-----CCCcchHHHHHHHHHHhCCC-hhhEEEeCCHHHHHHHHHH
Confidence 7899988633 454 5 89999999998865432 22334467888888877632 3689999999999999999
Q ss_pred HHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcc
Q 005009 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (719)
Q Consensus 480 lA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (719)
... +. ..+|+....+||+....+... |.. .
T Consensus 103 ~~~-----~~----------------gd~vl~~~~~~~~~~~~~~~~-g~~----------------------------~ 132 (363)
T 3ffh_A 103 VLL-----DT----------------TTNTVMATPTFVQYRQNALIE-GAE----------------------------V 132 (363)
T ss_dssp HHC-----ST----------------TCEEEEEESSCHHHHHHHHHH-TCE----------------------------E
T ss_pred HHc-----cC----------------CCEEEEcCCChHHHHHHHHHc-CCE----------------------------E
Confidence 761 11 247999999999844332221 110 0
Q ss_pred eeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCC
Q 005009 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (719)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (719)
..++.+..+ .-| .+.+++.+. .++.+|+++.. +...|.+. |
T Consensus 133 ~~v~~~~~~---------------------~~d--------~~~l~~~i~--------~~~~~v~~~~p-~nptG~~~-~ 173 (363)
T 3ffh_A 133 REIPLLQDG---------------------EHD--------LEGMLNAID--------EKTTIVWICNP-NNPTGNYI-E 173 (363)
T ss_dssp EEEECCTTS---------------------CCC--------HHHHHHHCC--------TTEEEEEEESS-CTTTCCCC-C
T ss_pred EEecCCCCC---------------------CcC--------HHHHHHhcc--------cCCCEEEEeCC-CCCcCCCc-C
Confidence 111111000 001 245666653 35778888876 88888876 4
Q ss_pred HHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcc----eeeehhccC-CCccchheeEeCHHHHhhhcC
Q 005009 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPD----IACYGKLLT-GGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 640 ~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PD----IvtlgK~Lg-gG~~Plsavl~~~~i~~~~~~ 713 (719)
.+.++++.++|++ |+++|+||+|++|++ |+++........+| +.+++|.+| .| +++|++++++++.+.+..
T Consensus 174 ~~~l~~l~~~~~~-~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~ 249 (363)
T 3ffh_A 174 LADIQAFLDRVPS-DVLVVLDEAYIEYVT-PQPEKHEKLVRTYKNLIITRTFSKIYGLAS-ARVGYGIADKEIIRQLNI 249 (363)
T ss_dssp HHHHHHHHTTSCT-TSEEEEECTTGGGCS-SCCCCCGGGGGTCTTEEEEEESSSTTCCSS-CCCEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CcEEEEeCchHhhcC-ccccCHHHHhhcCCCEEEEeechhhhcCch-hceeeeecCHHHHHHHHH
Confidence 5556666666666 999999999999988 77655544444455 558999998 78 799999999999987754
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=7.7e-13 Score=146.44 Aligned_cols=220 Identities=14% Similarity=0.006 Sum_probs=138.1
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlK 479 (719)
.|||+.++.++.. - .+++.+|+... ...+ ...+...+|.++|+++.+ .+.++|++||++|++.|++
T Consensus 43 ~ylD~~~~~~~~~---~-~~~~~~a~~~~-----~~~y--~~~~~~~~l~~~la~~~~---~~~~~~~~~gt~a~~~al~ 108 (456)
T 2ez2_A 43 IYIDLLTDSGTNA---M-SDKQWAGMMMG-----DEAY--AGSENFYHLERTVQELFG---FKHIVPTHQGRGAENLLSQ 108 (456)
T ss_dssp CSEECSCSSSCCC---C-CHHHHHHHTTC-----CCCS--SSCHHHHHHHHHHHHHHC---CSEEEEESSHHHHHHHHHH
T ss_pred ceeeeccccCCcc---C-CHHHHHHhhcc-----hhhc--ccChhHHHHHHHHHHHhC---CCcEEEeCCcHHHHHHHHH
Confidence 8999988655432 2 57777776521 1111 135567899999999887 3689999999999999998
Q ss_pred HHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcc
Q 005009 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (719)
Q Consensus 480 lA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (719)
.+. . ++ + |+...+||+.+..++...|....
T Consensus 109 ~l~-----~---------------~g--d-i~~~~~~~~~~~~~~~~~G~~~~--------------------------- 138 (456)
T 2ez2_A 109 LAI-----K---------------PG--Q-YVAGNMYFTTTRYHQEKNGAVFV--------------------------- 138 (456)
T ss_dssp HHC-----C---------------TT--C-EEEESSCCHHHHHHHHHTTCEEE---------------------------
T ss_pred HhC-----C---------------CC--C-EeccccccchhHHHHHHcCCEEE---------------------------
Confidence 771 1 22 3 77888998987666665542110
Q ss_pred eeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEc-cccccCCccccC
Q 005009 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIE-PVVHAAGGMHMV 638 (719)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvE-PViqg~gG~~~p 638 (719)
.++...... +....+|+. .-| .+.|++.+.+ .....+++|+++ |. ++..|. +.
T Consensus 139 -~v~~~~~~~----~~~~~~~~~-------~~d--------~~~l~~~i~~----~t~~~~~~v~l~~p~-n~ptG~-~~ 192 (456)
T 2ez2_A 139 -DIVRDEAHD----AGLNIAFKG-------DID--------LKKLQKLIDE----KGAENIAYICLAVTV-NLAGGQ-PV 192 (456)
T ss_dssp -ECBCGGGGC----TTCCCSCTT-------CBC--------HHHHHHHHHH----HCGGGEEEEEEESSB-TTTTSB-CC
T ss_pred -Eeccccccc----ccccccccC-------CCC--------HHHHHHHHHh----ccccceeEEEEeccC-CCCCCc-cC
Confidence 000000000 000000100 001 2556777753 112467899999 65 657785 56
Q ss_pred CHHHHHHHHHHHHhcCCcEEEeccccC----------ccccCcccc--ccccCCCcceeee-hhccCCCccc-hheeEe-
Q 005009 639 DPLFQRILVKECQNRKIPVIFDEVFTG----------FWRLGVETT--ADLLGCVPDIACY-GKLLTGGVIP-LAATLA- 703 (719)
Q Consensus 639 p~~fl~~Lr~Lc~k~gilLI~DEVqTG----------fGRtG~~~a--~e~~gv~PDIvtl-gK~LggG~~P-lsavl~- 703 (719)
+.+++++|.++|++||++||+||+|+. +++.|..+. .+..+..+|++++ +|.+++ .| .|.+++
T Consensus 193 ~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~--~~~gG~~~~~ 270 (456)
T 2ez2_A 193 SMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCL--VNIGGFLCMN 270 (456)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTC--CSSCEEEEES
T ss_pred CHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEEEEeCcccCC--CCceeEEEEC
Confidence 899999999999999999999999974 456665431 1123445899988 477754 35 456666
Q ss_pred CHHHHhhh
Q 005009 704 TNAVFDSF 711 (719)
Q Consensus 704 ~~~i~~~~ 711 (719)
++++++.+
T Consensus 271 ~~~~~~~~ 278 (456)
T 2ez2_A 271 DDEMFSSA 278 (456)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 57776654
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-12 Score=141.67 Aligned_cols=222 Identities=13% Similarity=0.021 Sum_probs=139.5
Q ss_pred CCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccC-CCCCChHHHHHHHHHHhccCCC-CCCeEEEeCC
Q 005009 392 DQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF-PENVYEPALECAELLLQGVGKG-WASRAYFSDN 469 (719)
Q Consensus 392 ~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~-~~~~~~~~~~Lae~L~~~~~~~-~~~rv~f~~S 469 (719)
.+|+ ++|||.+|.. .++. +|+|.+|+.++++....... .....+...++++.+.+..+.+ ..+.++|+++
T Consensus 28 ~~g~----~~i~l~~g~~--~~~~--~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g 99 (391)
T 3h14_A 28 EAGR----RIIHMEVGQP--GTGA--PRGAVEALAKSLETDALGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPG 99 (391)
T ss_dssp HTTC----CCEECCCSSC--SSCS--CHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESS
T ss_pred hcCC----CeEEccCCCC--CCCC--CHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecC
Confidence 4677 9999999764 3443 78999999998875322111 1112344555555555432210 1368999999
Q ss_pred hHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccC
Q 005009 470 GSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLD 549 (719)
Q Consensus 470 GsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~ 549 (719)
|++|++.+++... +. ..+|++...+||+....... .|..
T Consensus 100 ~~~al~~~~~~l~-----~~----------------gd~vl~~~p~~~~~~~~~~~-~g~~------------------- 138 (391)
T 3h14_A 100 SSGGFLLAFTALF-----DS----------------GDRVGIGAPGYPSYRQILRA-LGLV------------------- 138 (391)
T ss_dssp HHHHHHHHHHHHC-----CT----------------TCEEEEEESCCHHHHHHHHH-TTCE-------------------
T ss_pred hHHHHHHHHHHhc-----CC----------------CCEEEEcCCCCccHHHHHHH-cCCE-------------------
Confidence 9999999998771 11 24799999999985433221 1110
Q ss_pred CCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccc
Q 005009 550 PPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVV 629 (719)
Q Consensus 550 ~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPVi 629 (719)
...++.... + -+ .-| .+.++ + . ++.+|+++..
T Consensus 139 ---------~~~v~~~~~-------------~----~~--~~d--------~~~l~----~----~---~~~~v~i~~p- 170 (391)
T 3h14_A 139 ---------PVDLPTAPE-------------N----RL--QPV--------PADFA----G----L---DLAGLMVASP- 170 (391)
T ss_dssp ---------EEEEECCGG-------------G----TT--SCC--------HHHHT----T----S---CCSEEEEESS-
T ss_pred ---------EEEeecCcc-------------c----CC--CCC--------HHHHH----h----c---CCeEEEECCC-
Confidence 001111100 0 00 001 12222 1 1 4566777765
Q ss_pred ccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccccccc-CCCcceeeehhccC-CCccchheeEeCHHH
Q 005009 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL-GCVPDIACYGKLLT-GGVIPLAATLATNAV 707 (719)
Q Consensus 630 qg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~-gv~PDIvtlgK~Lg-gG~~Plsavl~~~~i 707 (719)
+...|.+. |.+.+++|.++|++||+++|+||++++|++.|.......+ +....+.+++|.+| .| +++|++++++++
T Consensus 171 ~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~ 248 (391)
T 3h14_A 171 ANPTGTML-DHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYFSMTG-WRVGWMVVPEDQ 248 (391)
T ss_dssp CTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCCTT-SCCEEEECCGGG
T ss_pred CCCCCccC-CHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhccCCcc-ceeEEEEeCHHH
Confidence 78888765 6777999999999999999999999999888864333222 22223337999998 88 799999999998
Q ss_pred Hhhhc
Q 005009 708 FDSFV 712 (719)
Q Consensus 708 ~~~~~ 712 (719)
.+.+.
T Consensus 249 ~~~~~ 253 (391)
T 3h14_A 249 VRVVE 253 (391)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-12 Score=141.88 Aligned_cols=216 Identities=13% Similarity=0.112 Sum_probs=142.6
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcc-----cccCCCCCChHHHHHHHHHHhccCCC-CCCeEEEeCChHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG-----HVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTA 473 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~-----~~~~~~~~~~~~~~Lae~L~~~~~~~-~~~rv~f~~SGsEA 473 (719)
.+|||.+| .+.... +|+|.+|++++++... .........+...++++.+.+..+.+ ..+.++|+++|++|
T Consensus 36 ~~i~l~~~---~~~~~~-~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~a 111 (398)
T 3ele_A 36 NVYDFSIG---NPSIPA-PQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAAS 111 (398)
T ss_dssp GCEECCSC---CCCSCC-CHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHH
T ss_pred CeEEeecC---CCCCCC-CHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHH
Confidence 78999886 233346 9999999999987632 11111122455666777776544311 13689999999999
Q ss_pred HHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcc
Q 005009 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (719)
Q Consensus 474 ~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~ 553 (719)
++.+++... . +++.+|+....+||+....+.. .|..
T Consensus 112 l~~~~~~l~-----~---------------~g~d~vl~~~p~~~~~~~~~~~-~g~~----------------------- 147 (398)
T 3ele_A 112 LSICFRALT-----S---------------DAYDEFITIAPYFPEYKVFVNA-AGAR----------------------- 147 (398)
T ss_dssp HHHHHHHHC-----C---------------STTCEEEEESSCCTHHHHHHHH-TTCE-----------------------
T ss_pred HHHHHHHHc-----C---------------CCCCEEEEeCCCchhhHHHHHH-cCCE-----------------------
Confidence 999999871 1 2225899999999985433222 1110
Q ss_pred cccCcceeecCc-chhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 005009 554 FMYNSKWILSLP-EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (719)
Q Consensus 554 ~~~~~~~~~~~P-~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~ 632 (719)
...++.. +.+ .-| .+.+++.+. .++.+|++... +..
T Consensus 148 -----~~~v~~~~~~~---------------------~~d--------~~~l~~~l~--------~~~~~v~~~~p-~np 184 (398)
T 3ele_A 148 -----LVEVPADTEHF---------------------QID--------FDALEERIN--------AHTRGVIINSP-NNP 184 (398)
T ss_dssp -----EEEECCCTTTS---------------------SCC--------HHHHHHTCC--------TTEEEEEECSS-CTT
T ss_pred -----EEEEecCCcCC---------------------cCC--------HHHHHHHhC--------cCCCEEEEcCC-CCC
Confidence 0011111 000 001 245665553 25677777654 777
Q ss_pred CccccCCHHHHHHHHHHHHh------cCCcEEEeccccCccccCccc--cccccCCCcceeeehhccC-CCccchheeEe
Q 005009 633 GGMHMVDPLFQRILVKECQN------RKIPVIFDEVFTGFWRLGVET--TADLLGCVPDIACYGKLLT-GGVIPLAATLA 703 (719)
Q Consensus 633 gG~~~pp~~fl~~Lr~Lc~k------~gilLI~DEVqTGfGRtG~~~--a~e~~gv~PDIvtlgK~Lg-gG~~Plsavl~ 703 (719)
.|.+. |.+.+++|.++|++ ||+++|+||++++|++.|... ..+.++....+.+++|.+| .| +++|++++
T Consensus 185 tG~~~-~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~ 262 (398)
T 3ele_A 185 SGTVY-SEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKSLSLPG-ERIGYVLV 262 (398)
T ss_dssp TCCCC-CHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTTTSSCTT-TCCEEEEC
T ss_pred CCCCC-CHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEEehhhcCCCcc-ceeEEEEE
Confidence 88765 66779999999999 999999999999998888533 2244454555668999998 88 79999999
Q ss_pred CHHHH
Q 005009 704 TNAVF 708 (719)
Q Consensus 704 ~~~i~ 708 (719)
++++.
T Consensus 263 ~~~~~ 267 (398)
T 3ele_A 263 PDEVY 267 (398)
T ss_dssp CTTST
T ss_pred cchhh
Confidence 98743
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=99.42 E-value=5.7e-13 Score=145.34 Aligned_cols=211 Identities=13% Similarity=0.035 Sum_probs=139.8
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhh--hc-ccccC-----CCCCChHHHHHHHHHHhccCCCCCCeEEEeCChH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAA--RF-GHVMF-----PENVYEPALECAELLLQGVGKGWASRAYFSDNGS 471 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~--~~-~~~~~-----~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGs 471 (719)
.|||+.+ -|+. +|+|++|+.+++. .. ..... .....+...++.++|++.++.+ .+.++|+++|+
T Consensus 24 iyld~~~------~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~-~~~v~~~~ggt 95 (423)
T 3lvm_A 24 IYLDYSA------TTPV-DPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGAD-PREIVFTSGAT 95 (423)
T ss_dssp EECBTTT------CCCC-CHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCC-GGGEEEESSHH
T ss_pred EeecCCC------cCCC-CHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCC-CCeEEEeCChH
Confidence 7899765 3678 9999999999987 32 21100 0011345578889999988743 35899999999
Q ss_pred HHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccc--cCCCCCCCCCCCCCccCCCcccC
Q 005009 472 TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA--QAPSPYTGFLQQPWYSGRGLFLD 549 (719)
Q Consensus 472 EA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galsl--t~~~~~~~~~~~~~~~~~~~~~~ 549 (719)
+|++.|++.+.+.+. .. ..+|+....+||+.......+ .|..
T Consensus 96 ~a~~~a~~~l~~~~~-~~----------------gd~Vl~~~~~~~~~~~~~~~~~~~g~~------------------- 139 (423)
T 3lvm_A 96 ESDNLAIKGAANFYQ-KK----------------GKHIITSKTEHKAVLDTCRQLEREGFE------------------- 139 (423)
T ss_dssp HHHHHHHHHHHHHHT-TT----------------CCEEEEETTSCHHHHHHHHHHHHTTCE-------------------
T ss_pred HHHHHHHHHHHHhhc-cC----------------CCEEEECCccchHHHHHHHHHHHcCCE-------------------
Confidence 999999998743332 11 247888888888854333222 1100
Q ss_pred CCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccc
Q 005009 550 PPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVV 629 (719)
Q Consensus 550 ~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPVi 629 (719)
...++....+ ..| .+.+++.+. .++++|+++++
T Consensus 140 ---------~~~v~~~~~~-----------~~d------------------~~~l~~~i~--------~~~~~v~~~~~- 172 (423)
T 3lvm_A 140 ---------VTYLAPQRNG-----------IID------------------LKELEAAMR--------DDTILVSIMHV- 172 (423)
T ss_dssp ---------EEEECCCTTS-----------CCC------------------HHHHHHHCC--------TTEEEEECCSB-
T ss_pred ---------EEEeccCCCC-----------ccC------------------HHHHHHhcC--------CCcEEEEEeCC-
Confidence 0111111000 001 255666664 36789999997
Q ss_pred ccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeeh--hccCCCccchheeEeCHHH
Q 005009 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAV 707 (719)
Q Consensus 630 qg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~LggG~~Plsavl~~~~i 707 (719)
++..|.+.+ +++|.++|++||++||+||++++ |.. ........+|+++++ |.+ |+ .++|++++++++
T Consensus 173 ~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~-~~~----~~~~~~~~~di~~~s~sK~~-g~-~g~G~~~~~~~~ 241 (423)
T 3lvm_A 173 NNEIGVVQD----IAAIGEMCRARGIIYHVDATQSV-GKL----PIDLSQLKVDLMSFSGHKIY-GP-KGIGALYVRRKP 241 (423)
T ss_dssp CTTTCBBCC----HHHHHHHHHHHTCEEEEECTTTT-TTS----CCCTTTSCCSEEEEESTTTT-SC-SSCEEEEECBTT
T ss_pred CCCCccccC----HHHHHHHHHHcCCEEEEEhhhhc-CCC----CcChhhcCCCEEEechHHhc-CC-CCeEEEEEeccc
Confidence 899999887 99999999999999999999964 222 122233468999876 954 34 468999999887
Q ss_pred Hhhhc
Q 005009 708 FDSFV 712 (719)
Q Consensus 708 ~~~~~ 712 (719)
.+.+.
T Consensus 242 ~~~~~ 246 (423)
T 3lvm_A 242 RVRIE 246 (423)
T ss_dssp BCCCC
T ss_pred cCCCC
Confidence 66553
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.41 E-value=1e-12 Score=140.82 Aligned_cols=210 Identities=12% Similarity=-0.047 Sum_probs=135.7
Q ss_pred CCCCCHHHHHHHHHhhhhcccccCC-CCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhcc--cc
Q 005009 414 DATLQIELARDMGYTAARFGHVMFP-ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD--HE 490 (719)
Q Consensus 414 GH~~hP~V~~Av~~q~~~~~~~~~~-~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~--~G 490 (719)
+.. +|++.+|+.+++......... ....+...++.++|++..+.+ .+.++|+++|++|++.|++.++..+..+ .|
T Consensus 40 ~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~-~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~ 117 (397)
T 3f9t_A 40 SNV-LPITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSLLNNK-DAYGHIVSGGTEANLMALRCIKNIWREKRRKG 117 (397)
T ss_dssp CCC-CTHHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHHHTTCT-TCEEEEESCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCC-cHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCC-CCCEEEecCcHHHHHHHHHHHHHHHHhhhhhc
Confidence 345 899999999998763221110 012445567888899888654 4688999999999999999984321111 00
Q ss_pred ccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhh
Q 005009 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYS 570 (719)
Q Consensus 491 ~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~ 570 (719)
. ....+.+|+....+|++ +..++...|.. ...++....+.
T Consensus 118 ~----------~~~~gd~vl~~~~~~~~-~~~~~~~~g~~----------------------------~~~v~~~~~~~- 157 (397)
T 3f9t_A 118 L----------SKNEHPKIIVPITAHFS-FEKGREMMDLE----------------------------YIYAPIKEDYT- 157 (397)
T ss_dssp C----------CCCSSCEEEEETTCCTH-HHHHHHHHTCE----------------------------EEEECBCTTSS-
T ss_pred c----------cCCCCeEEEECCcchhH-HHHHHHHcCce----------------------------eEEEeeCCCCc-
Confidence 0 00123467777776666 33333332210 01111111110
Q ss_pred cccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHH
Q 005009 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650 (719)
Q Consensus 571 ~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc 650 (719)
.| .+.+++.+.+ .++.+|++++. ++..|.+.+ +++|.++|
T Consensus 158 ----------~d------------------~~~l~~~i~~-------~~~~~v~~~~~-~nptG~~~~----l~~i~~l~ 197 (397)
T 3f9t_A 158 ----------ID------------------EKFVKDAVED-------YDVDGIIGIAG-TTELGTIDN----IEELSKIA 197 (397)
T ss_dssp ----------BC------------------HHHHHHHHHH-------SCCCEEEEEBS-CTTTCCBCC----HHHHHHHH
T ss_pred ----------CC------------------HHHHHHHHhh-------cCCeEEEEECC-CCCCCCCCC----HHHHHHHH
Confidence 01 2567777763 14567777776 788888876 99999999
Q ss_pred HhcCCcEEEeccccCc--cccCc---------cccccccCCCcceeeehhccCCCccchheeEeCHHH
Q 005009 651 QNRKIPVIFDEVFTGF--WRLGV---------ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAV 707 (719)
Q Consensus 651 ~k~gilLI~DEVqTGf--GRtG~---------~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i 707 (719)
++||+++|+||+++++ +.+|. .+.++. ++.+.+.+++|.+++| .++|+++++++.
T Consensus 198 ~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~-~~~g~~~~~~~~ 263 (397)
T 3f9t_A 198 KENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCP-IPSGGILFKDIG 263 (397)
T ss_dssp HHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCC-SSCEEEEESSGG
T ss_pred HHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCC-CCceEEEEeCHH
Confidence 9999999999999874 44554 455555 7777777899999888 599999987654
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-12 Score=144.90 Aligned_cols=225 Identities=12% Similarity=0.047 Sum_probs=140.7
Q ss_pred CCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhccccc-CCCCC-ChHHHHHHHHHHhcc----CCCCCCeEE
Q 005009 392 DQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM-FPENV-YEPALECAELLLQGV----GKGWASRAY 465 (719)
Q Consensus 392 ~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~-~~~~~-~~~~~~Lae~L~~~~----~~~~~~rv~ 465 (719)
.+|+ ++||+.+|. ..++ . +|+|++|++++++++.... ...+. .....+|.++|++++ +.. .+.++
T Consensus 66 ~~~~----~~i~l~~g~--~~~~-~-~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~g~~~~-~~~i~ 136 (449)
T 3qgu_A 66 NPDA----KIISLGIGD--TTEP-L-PKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFYGHAGRA-ADEIF 136 (449)
T ss_dssp CTTC----CCEECSSCC--CCCC-C-CHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHHTTTTCC-GGGEE
T ss_pred CCCC----CEEEeeCCC--CCCC-C-CHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHHcCCCCC-HHHEE
Confidence 3567 899998873 2232 4 8999999999998654211 11121 122457777777765 322 36899
Q ss_pred EeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCC
Q 005009 466 FSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRG 545 (719)
Q Consensus 466 f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~ 545 (719)
|+++|++|++.+..++ +. ..+|+..+.+||+.............++.. .|
T Consensus 137 ~t~G~~~al~~~~~l~------~~----------------gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~~---~~----- 186 (449)
T 3qgu_A 137 ISDGSKCDIARIQMMF------GS----------------KPTVAVQDPSYPVYVDTSVMMGMTGDHNGT---GF----- 186 (449)
T ss_dssp EESCHHHHHHHHHHHH------CS----------------SSCEEEEESCCTHHHHHHHHHTCSCCBCSS---SB-----
T ss_pred EccCHHHHHHHHHHHh------CC----------------CCEEEEcCCCChhHHHHHHHcCCccccccc---cc-----
Confidence 9999999999872222 11 247999999999876544333211001100 00
Q ss_pred cccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE
Q 005009 546 LFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII 625 (719)
Q Consensus 546 ~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIv 625 (719)
. ....++.. +. +.+ ..+ +++ ..++.+|++
T Consensus 187 --~---------~~~~~~~~----------------~~-~~~--~~~---------------~~~------~~~~~~v~l 215 (449)
T 3qgu_A 187 --D---------GIEYMVCN----------------PD-NHF--FPD---------------LSK------AKRTDIIFF 215 (449)
T ss_dssp --T---------TEEEEECC----------------GG-GTT--CCC---------------GGG------CCCCSEEEE
T ss_pred --c---------eeEEEecc----------------cc-cCC--cCC---------------hhH------cCCCCEEEE
Confidence 0 01111111 00 000 000 111 124557777
Q ss_pred ccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc-cccccc----CCCcceeeehhccC-CCccchh
Q 005009 626 EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLL----GCVPDIACYGKLLT-GGVIPLA 699 (719)
Q Consensus 626 EPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~-~a~e~~----gv~PDIvtlgK~Lg-gG~~Pls 699 (719)
+.. +...|.+. +.+.+++|.++|++||++||+||++++|++.|.. .....+ ++..++.+++|.+| .| +++|
T Consensus 216 ~~p-~NPtG~~~-~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G 292 (449)
T 3qgu_A 216 CSP-NNPTGAAA-TRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTG-VRLG 292 (449)
T ss_dssp ESS-CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCTT-CCCE
T ss_pred eCC-CCCCCCcC-CHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCcc-ceeE
Confidence 765 77778755 7888999999999999999999999999887742 233222 33455678999998 88 7999
Q ss_pred eeEeCHHHHh
Q 005009 700 ATLATNAVFD 709 (719)
Q Consensus 700 avl~~~~i~~ 709 (719)
++++++++++
T Consensus 293 ~~~~~~~~~~ 302 (449)
T 3qgu_A 293 WTVVPKALKY 302 (449)
T ss_dssp EEECCTTCBC
T ss_pred EEecCHHHHh
Confidence 9999998765
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=4.7e-12 Score=138.92 Aligned_cols=224 Identities=10% Similarity=-0.001 Sum_probs=135.2
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhh------------hcccccCCCCCChHHHHHHHHHHhccC----CCCCCe
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAA------------RFGHVMFPENVYEPALECAELLLQGVG----KGWASR 463 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~------------~~~~~~~~~~~~~~~~~Lae~L~~~~~----~~~~~r 463 (719)
.++|+.++. +.+| +|.+.+++.++.. ............+....+++.+.+..+ -. .+.
T Consensus 37 ~~i~l~~~~--~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~-~~~ 110 (428)
T 1iay_A 37 GVIQMGLAE--NQLC---LDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFD-PER 110 (428)
T ss_dssp SBEECSSCC--CCSS---HHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCC-TTS
T ss_pred ceeeecccc--chhh---HHHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCC-hhh
Confidence 577877543 3443 5688888886531 111111011123334444444443222 11 367
Q ss_pred EEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccC
Q 005009 464 AYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSG 543 (719)
Q Consensus 464 v~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~ 543 (719)
++++++|++|++.+++.+. ..| .+|+....+||+.........|..
T Consensus 111 i~~~~G~~~ai~~~~~~~~-----~~g----------------d~Vl~~~p~y~~~~~~~~~~~g~~------------- 156 (428)
T 1iay_A 111 VVMAGGATGANETIIFCLA-----DPG----------------DAFLVPSPYYPAFNRDLRWRTGVQ------------- 156 (428)
T ss_dssp CEEEEHHHHHHHHHHHHHC-----CTT----------------CEEEEESSCCTTHHHHTTTTTCCE-------------
T ss_pred EEEccChHHHHHHHHHHhC-----CCC----------------CeEEEccCCCcchHHHHHHhcCCE-------------
Confidence 9999999999999999871 111 479999999998644322222211
Q ss_pred CCcccCCCcccccCcceeecCc--chhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEE
Q 005009 544 RGLFLDPPTVFMYNSKWILSLP--EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIG 621 (719)
Q Consensus 544 ~~~~~~~p~~~~~~~~~~~~~P--~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iA 621 (719)
...++.. +.| . -| .+.+++.+.+.. ....++.
T Consensus 157 ---------------~~~v~~~~~~~~------------~---------~d--------~~~l~~~l~~~~--~~~~~~~ 190 (428)
T 1iay_A 157 ---------------LIPIHCESSNNF------------K---------IT--------SKAVKEAYENAQ--KSNIKVK 190 (428)
T ss_dssp ---------------EEEECCCTTTTT------------C---------CC--------HHHHHHHHHHHH--HTTCCEE
T ss_pred ---------------EEEeecCCccCC------------c---------CC--------HHHHHHHHHHHH--hcCCceE
Confidence 0011110 000 0 01 244555554210 0233577
Q ss_pred EEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc-ccccc-------CCCcc----eeeehh
Q 005009 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLL-------GCVPD----IACYGK 689 (719)
Q Consensus 622 AvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~-a~e~~-------gv~PD----IvtlgK 689 (719)
+|++... +...|.+ .|.+++++|.++|++||+++|+||++++|++.|..+ ....+ ++.+| +.+++|
T Consensus 191 ~v~l~~p-~nptG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK 268 (428)
T 1iay_A 191 GLILTNP-SNPLGTT-LDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSK 268 (428)
T ss_dssp EEEEESS-CTTTCCC-CCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTT
T ss_pred EEEEcCC-CCCCCCc-CCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhccccccccCCCCcEEEEecchh
Confidence 7776654 6767875 488999999999999999999999999987766532 22112 34488 558999
Q ss_pred ccC-CCccchheeEe-CHHHHhhhc
Q 005009 690 LLT-GGVIPLAATLA-TNAVFDSFV 712 (719)
Q Consensus 690 ~Lg-gG~~Plsavl~-~~~i~~~~~ 712 (719)
++| .| +++|++++ ++++++.+.
T Consensus 269 ~~g~~G-lr~G~~~~~~~~~~~~~~ 292 (428)
T 1iay_A 269 DMGLPG-FRVGIIYSFNDDVVNCAR 292 (428)
T ss_dssp TSSCGG-GCEEEEEESCHHHHHHHH
T ss_pred hcCCCC-ceEEEEEeCCHHHHHHHH
Confidence 998 78 79999999 688887653
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.39 E-value=2.2e-12 Score=140.29 Aligned_cols=210 Identities=14% Similarity=0.043 Sum_probs=141.1
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhc-ccccC----CCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARF-GHVMF----PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~-~~~~~----~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~ 474 (719)
.|||+.+ .|+. +|+|.+|+.++++.. ..... .....+...++.++|++.++.+ .+.++|+++|++|+
T Consensus 30 ~yld~~~------~~~~-~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~t~al 101 (416)
T 1qz9_A 30 IYLDGNS------LGAR-PVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGAR-DGEVVVTDTTSINL 101 (416)
T ss_dssp EECCTTT------SCCC-BTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCC-TTSEEECSCHHHHH
T ss_pred EeecCCC------cCCC-cHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCC-cccEEEeCChhHHH
Confidence 8888754 4788 999999999999753 21110 0011356678999999988753 35899999999999
Q ss_pred HHHHHHHHHHhhc--cccccccccCCCccccCcceEEEEEeCCcccCcccccc-ccCCCCCCCCCCCCCccCCCcccCCC
Q 005009 475 EIALKMAFRKFSF--DHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAME-AQAPSPYTGFLQQPWYSGRGLFLDPP 551 (719)
Q Consensus 475 E~AlKlA~r~~~~--~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~gals-lt~~~~~~~~~~~~~~~~~~~~~~~p 551 (719)
+.|++.++ .+.. .. + .++|.....+|+.+..++. +..... .+
T Consensus 102 ~~al~~~~-~~~~~~~~---------------g-d~vii~~~~~~~~~~~~~~~~~~~~~-~g----------------- 146 (416)
T 1qz9_A 102 FKVLSAAL-RVQATRSP---------------E-RRVIVTETSNFPTDLYIAEGLADMLQ-QG----------------- 146 (416)
T ss_dssp HHHHHHHH-HHHHHHST---------------T-CCEEEEETTSCHHHHHHHHHHHHHHC-SS-----------------
T ss_pred HHHHHhhc-ccccccCC---------------C-CcEEEEcCCCCCchHHHHHHHHHHhc-CC-----------------
Confidence 99999873 2210 11 1 2577788889987655432 110000 00
Q ss_pred cccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccccc
Q 005009 552 TVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHA 631 (719)
Q Consensus 552 ~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg 631 (719)
...+.+| . .+.+++.+. .++++|+++++ ++
T Consensus 147 -------~~~~~v~--------------~--------------------~~~l~~~i~--------~~~~~v~~~~~-~n 176 (416)
T 1qz9_A 147 -------YTLRLVD--------------S--------------------PEELPQAID--------QDTAVVMLTHV-NY 176 (416)
T ss_dssp -------CEEEEES--------------S--------------------GGGHHHHCS--------TTEEEEEEESB-CT
T ss_pred -------ceEEEeC--------------c--------------------HHHHHHHhC--------CCceEEEEecc-cc
Confidence 0001111 0 023455553 26789999997 89
Q ss_pred CCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeee--hhccCCCccch-heeEeCHHHH
Q 005009 632 AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPL-AATLATNAVF 708 (719)
Q Consensus 632 ~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtl--gK~LggG~~Pl-savl~~~~i~ 708 (719)
..|.+.+ +++|.++|++||+++|+||+|+ +|... +..+.+ .+|++++ +|.+++| ..+ |+++++++++
T Consensus 177 ptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~~--~~~~~~--~~d~~~~s~~K~l~~g-~~~~g~l~~~~~~~ 246 (416)
T 1qz9_A 177 KTGYMHD----MQALTALSHECGALAIWDLAHS-AGAVP--VDLHQA--GADYAIGCTYKYLNGG-PGSQAFVWVSPQLC 246 (416)
T ss_dssp TTCBBCC----HHHHHHHHHHHTCEEEEECTTT-TTTSC--CCHHHH--TCSEEEECSSSTTCCC-TTCCCEEEECTTTT
T ss_pred CcccccC----HHHHHHHHHHcCCEEEEEcccc-ccCcC--CChhhc--CCCEEEecCcccCCCC-CCCeEEEEECHHHH
Confidence 8899887 8999999999999999999996 55443 222333 4899876 5999887 576 9999999987
Q ss_pred hhhc
Q 005009 709 DSFV 712 (719)
Q Consensus 709 ~~~~ 712 (719)
+.+.
T Consensus 247 ~~l~ 250 (416)
T 1qz9_A 247 DLVP 250 (416)
T ss_dssp TTSC
T ss_pred hccC
Confidence 6654
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.38 E-value=5.8e-12 Score=136.58 Aligned_cols=215 Identities=6% Similarity=-0.056 Sum_probs=141.2
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccC---CCCC---ChHHHHHHHHHHhccCCCCCCeEEEeCChHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF---PENV---YEPALECAELLLQGVGKGWASRAYFSDNGSTA 473 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~---~~~~---~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA 473 (719)
.+++|.++. .++. +|+|.+|+.++++.+..... ..+. ++...++.++|+++++....+.++|+++|++|
T Consensus 28 ~~i~l~~~~----~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a 102 (420)
T 1t3i_A 28 PLVYLDNAA----TSQK-PRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEA 102 (420)
T ss_dssp ECEECBTTT----CCCC-CHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHH
T ss_pred ceEEecCCc----cCCC-CHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCChHHH
Confidence 566665543 3578 99999999999987431100 0011 24467888999998874113689999999999
Q ss_pred HHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCcccccc---ccCCCCCCCCCCCCCccCCCcccCC
Q 005009 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAME---AQAPSPYTGFLQQPWYSGRGLFLDP 550 (719)
Q Consensus 474 ~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~gals---lt~~~~~~~~~~~~~~~~~~~~~~~ 550 (719)
++.+++.+ +..... ...+|+....+||+....... ..|..
T Consensus 103 ~~~~~~~~-~~~~~~----------------~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~-------------------- 145 (420)
T 1t3i_A 103 INLVAYSW-GMNNLK----------------AGDEIITTVMEHHSNLVPWQMVAAKTGAV-------------------- 145 (420)
T ss_dssp HHHHHHHT-HHHHCC----------------TTCEEEEETTCCGGGTHHHHHHHHHHCCE--------------------
T ss_pred HHHHHHHh-hhcccC----------------CCCEEEECcchhHHHHHHHHHHHHhcCcE--------------------
Confidence 99999988 321111 124799999999995421111 11110
Q ss_pred CcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc
Q 005009 551 PTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630 (719)
Q Consensus 551 p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViq 630 (719)
...++.+..+. .| .+.+++.+. .++++|++++. +
T Consensus 146 --------~~~v~~~~~~~-----------~d------------------~~~l~~~l~--------~~~~~v~~~~~-~ 179 (420)
T 1t3i_A 146 --------LKFVQLDEQES-----------FD------------------LEHFKTLLS--------EKTKLVTVVHI-S 179 (420)
T ss_dssp --------EEEECBCTTSS-----------BC------------------HHHHHHHCC--------TTEEEEEEESB-C
T ss_pred --------EEEeccCCCCC-----------cC------------------HHHHHHhhC--------CCceEEEEeCC-c
Confidence 01111111100 01 245666664 36789999997 8
Q ss_pred cCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeeh--hccCCCccchheeEeCHHHH
Q 005009 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVF 708 (719)
Q Consensus 631 g~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~LggG~~Plsavl~~~~i~ 708 (719)
+..|.+.+ +++|.++|++||+++|+||+++ +|... +....+ .+|+++++ |.+| + ..+|+++++++++
T Consensus 180 nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~~--~~~~~~--~~di~~~s~sK~~~-~-~g~G~~~~~~~~~ 248 (420)
T 1t3i_A 180 NTLGCVNP----AEEIAQLAHQAGAKVLVDACQS-APHYP--LDVQLI--DCDWLVASGHKMCA-P-TGIGFLYGKEEIL 248 (420)
T ss_dssp TTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTSC--CCHHHH--TCSEEEEEGGGTTS-C-TTCEEEEECHHHH
T ss_pred ccccCcCC----HHHHHHHHHHcCCEEEEEhhhc-cCCcc--Cchhhc--CCCEEEEehhhhcC-C-CceEEEEEchHHH
Confidence 88898887 8999999999999999999996 44432 223333 38999776 9554 3 2489999999998
Q ss_pred hhhcC
Q 005009 709 DSFVG 713 (719)
Q Consensus 709 ~~~~~ 713 (719)
+.+..
T Consensus 249 ~~~~~ 253 (420)
T 1t3i_A 249 EAMPP 253 (420)
T ss_dssp HHSCC
T ss_pred hhcCc
Confidence 87643
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.38 E-value=9.5e-13 Score=142.13 Aligned_cols=205 Identities=16% Similarity=0.074 Sum_probs=141.5
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCC-eEEEeCChHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWAS-RAYFSDNGSTAIEIAL 478 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~-rv~f~~SGsEA~E~Al 478 (719)
.|+|.. +-++. +|++.+|+.+++.. +.. ....+...+++++|++..+.+ .+ .++|+++|++|++.++
T Consensus 35 ~~l~~~------~~~~~-~~~v~~a~~~~~~~--~~~--~~~~~~~~~~~~~la~~~g~~-~~~~v~~t~g~t~al~~~~ 102 (393)
T 1vjo_A 35 RLLLGP------GPSNA-HPSVLQAMNVSPVG--HLD--PAFLALMDEIQSLLRYVWQTE-NPLTIAVSGTGTAAMEATI 102 (393)
T ss_dssp CEECSS------SCCCC-CHHHHHHHSSCCCC--TTS--HHHHHHHHHHHHHHHHHHTCC-CSCEEEESSCHHHHHHHHH
T ss_pred ceeccC------CCCCC-CHHHHHHHhccccc--ccC--HHHHHHHHHHHHHHHHHhCCC-CCcEEEEeCchHHHHHHHH
Confidence 688844 35688 99999999988754 110 112356778889998887743 35 7999999999999999
Q ss_pred HHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccc-cccCCCCCCCCCCCCCccCCCcccCCCcccccC
Q 005009 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM-EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (719)
Q Consensus 479 KlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~gal-slt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (719)
+.+. .. ..+|+....+||+.+...+ ...|..
T Consensus 103 ~~~~-----~~----------------gd~Vl~~~~~~~~~~~~~~~~~~g~~--------------------------- 134 (393)
T 1vjo_A 103 ANAV-----EP----------------GDVVLIGVAGYFGNRLVDMAGRYGAD--------------------------- 134 (393)
T ss_dssp HHHC-----CT----------------TCEEEEEESSHHHHHHHHHHHHTTCE---------------------------
T ss_pred Hhcc-----CC----------------CCEEEEEcCChhHHHHHHHHHHcCCc---------------------------
Confidence 9872 11 2479999999998432211 111100
Q ss_pred cceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCcccc
Q 005009 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (719)
Q Consensus 558 ~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~ 637 (719)
...++.+..+ ..| .+.+++.+.+ . ++.+|++++. +...|.+.
T Consensus 135 -~~~v~~~~~~-----------~~d------------------~~~l~~~l~~-----~--~~~~v~~~~~-~nptG~~~ 176 (393)
T 1vjo_A 135 -VRTISKPWGE-----------VFS------------------LEELRTALET-----H--RPAILALVHA-ETSTGARQ 176 (393)
T ss_dssp -EEEEECCTTC-----------CCC------------------HHHHHHHHHH-----H--CCSEEEEESE-ETTTTEEC
T ss_pred -eEEEecCCCC-----------CCC------------------HHHHHHHHhh-----C--CceEEEEecc-CCCcceec
Confidence 0111211110 011 2556677752 1 4568889987 88889887
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeeh--hccCCCccchheeEeCHHHHhhhc
Q 005009 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 638 pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~LggG~~Plsavl~~~~i~~~~~ 712 (719)
+ +++|.++|++||+++|+||+++ +|... + ......+|+++.+ |.++++. ++|++++++++++.+.
T Consensus 177 ~----l~~i~~l~~~~~~~li~Dea~~-~g~~~--~--~~~~~~~di~~~s~sK~l~~~~-~~G~l~~~~~~~~~~~ 243 (393)
T 1vjo_A 177 P----LEGVGELCREFGTLLLVDTVTS-LGGVP--I--FLDAWGVDLAYSCSQKGLGCSP-GASPFTMSSRAIEKLQ 243 (393)
T ss_dssp C----CTTHHHHHHHHTCEEEEECTTT-TTTSC--C--CTTTTTCSEEECCSSSTTCSCS-SCEEEEECHHHHHHHH
T ss_pred c----HHHHHHHHHHcCCEEEEECCcc-ccCcC--C--cccccCccEEEEcCcccccCCC-ceEEEEECHHHHHHHh
Confidence 6 8999999999999999999997 76543 2 2223568999766 9999884 8999999999988763
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=9.5e-13 Score=141.37 Aligned_cols=211 Identities=11% Similarity=0.024 Sum_probs=143.0
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCC---CCC--ChHHHHHHHHHHhccCCCCCCeEEEeCChHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFP---ENV--YEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~---~~~--~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~ 474 (719)
.|+|.. ..|+. +|+|.+|+.++++...+.... .+. .+...++.++|+++++.+ .+.++|+++|++|+
T Consensus 18 i~l~~~------~~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~t~a~ 89 (390)
T 1elu_A 18 TYFNFG------GQGIL-PTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVD-PNTITITDNVTTGC 89 (390)
T ss_dssp EECCTT------TCCCC-CHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSC-GGGEEEESSHHHHH
T ss_pred EEecCC------ccCCC-CHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCCC-HHHEEEeCChHHHH
Confidence 566642 37898 999999999998875421100 011 256778999999988743 35899999999999
Q ss_pred HHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccc---cCCCCCCCCCCCCCccCCCcccCCC
Q 005009 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA---QAPSPYTGFLQQPWYSGRGLFLDPP 551 (719)
Q Consensus 475 E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galsl---t~~~~~~~~~~~~~~~~~~~~~~~p 551 (719)
+.+++.+ + . . ...+|+....+||+.......+ .|..
T Consensus 90 ~~~~~~~-~-~--~----------------~gd~vl~~~~~~~~~~~~~~~~~~~~g~~--------------------- 128 (390)
T 1elu_A 90 DIVLWGL-D-W--H----------------QGDEILLTDCEHPGIIAIVQAIAARFGIT--------------------- 128 (390)
T ss_dssp HHHHHHS-C-C--C----------------TTCEEEEETTCCHHHHHHHHHHHHHHCCE---------------------
T ss_pred HHHHhCC-C-C--C----------------CCCEEEEecCcccHHHHHHHHHHHHhCcE---------------------
Confidence 9999987 2 1 1 1248999999999865432111 1110
Q ss_pred cccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccccc
Q 005009 552 TVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHA 631 (719)
Q Consensus 552 ~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg 631 (719)
...++.+.. ++ + .. + .+.+++.+. .++++|++++. +.
T Consensus 129 -------~~~v~~~~~-------------~~----~--~~---d-----~~~l~~~i~--------~~~~~v~~~~~-~n 165 (390)
T 1elu_A 129 -------YRFFPVAAT-------------LN----Q--GD---A-----AAVLANHLG--------PKTRLVILSHL-LW 165 (390)
T ss_dssp -------EEEECCGGG-------------SS----S--SC---H-----HHHHHTTCC--------TTEEEEEEESB-CT
T ss_pred -------EEEEcCCCC-------------CC----c--cc---h-----HHHHHHhcC--------CCceEEEEecc-cc
Confidence 011111100 00 0 00 0 244554442 36889999997 88
Q ss_pred CCccccCCHHHHHHHHHHHH----hcCCcEEEeccccCccccCccccccccCCCcceee--ehhccCCCccchheeEeCH
Q 005009 632 AGGMHMVDPLFQRILVKECQ----NRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLATN 705 (719)
Q Consensus 632 ~gG~~~pp~~fl~~Lr~Lc~----k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvt--lgK~LggG~~Plsavl~~~ 705 (719)
..|.+.+ +++|.++|+ +||+++|+||+++ +|.+.. +.....+|+++ ++|.+.|| ..+|++++++
T Consensus 166 ptG~~~~----~~~i~~l~~~~~~~~~~~li~Dea~~-~g~~~~----~~~~~~~d~~~~s~~K~~~~~-~g~G~~~~~~ 235 (390)
T 1elu_A 166 NTGQVLP----LAEIMAVCRRHQGNYPVRVLVDGAQS-AGSLPL----DFSRLEVDYYAFTGHKWFAGP-AGVGGLYIHG 235 (390)
T ss_dssp TTCCBCC----HHHHHHHHHHCCSSSCCEEEEECTTT-BTTBCC----CTTTSCCSEEEEESSSTTCCC-TTCEEEEECT
T ss_pred CCceecC----HHHHHHHHhhhhhhcCcEEEEEcccc-cCCcCC----ChhhcCCCEEEccccccccCC-CceEEEEECH
Confidence 8898887 999999999 9999999999996 665432 11234689987 99988888 5789999999
Q ss_pred HHHhhhc
Q 005009 706 AVFDSFV 712 (719)
Q Consensus 706 ~i~~~~~ 712 (719)
++++.+.
T Consensus 236 ~~~~~~~ 242 (390)
T 1elu_A 236 DCLGEIN 242 (390)
T ss_dssp TTGGGCC
T ss_pred HhHhhcC
Confidence 9887764
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=3.8e-12 Score=134.89 Aligned_cols=211 Identities=9% Similarity=-0.006 Sum_probs=133.9
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCC-CChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPEN-VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIAL 478 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~-~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~Al 478 (719)
.+|||.++ +.++. +|+|++|+.+++.. +.. .+ ..+...+++++|++..+. -..++|++||++|++.|+
T Consensus 8 ~~id~~~~----~~~~~-~~~v~~a~~~~~~~--~~~--~~~~~~~~~~l~~~la~~~g~--~~~v~~~~~gt~a~~~al 76 (356)
T 1v72_A 8 PALGFSSD----NIAGA-SPEVAQALVKHSSG--QAG--PYGTDELTAQVKRKFCEIFER--DVEVFLVPTGTAANALCL 76 (356)
T ss_dssp CCCBCSCG----GGCCC-CHHHHHHHHHTTSS--CCC--STTCSHHHHHHHHHHHHHHTS--CCEEEEESCHHHHHHHHH
T ss_pred ceEeeccC----CccCC-CHHHHHHHHhhccC--ccc--ccccchHHHHHHHHHHHHhCC--CCcEEEeCCccHHHHHHH
Confidence 68999875 45789 99999999998743 211 22 356778999999998873 235899999999999999
Q ss_pred HHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCcccc--cccc--CCCCCCCCCCCCCccCCCcccCCCccc
Q 005009 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGA--MEAQ--APSPYTGFLQQPWYSGRGLFLDPPTVF 554 (719)
Q Consensus 479 KlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~ga--lslt--~~~~~~~~~~~~~~~~~~~~~~~p~~~ 554 (719)
+.++ +. .+.|.....+|+.+..+ +... |..
T Consensus 77 ~~~~-----~~-----------------gd~vi~~~~~~~~~~~~~~~~~~~~g~~------------------------ 110 (356)
T 1v72_A 77 SAMT-----PP-----------------WGNIYCHPASHINNDECGAPEFFSNGAK------------------------ 110 (356)
T ss_dssp HTSC-----CT-----------------TEEEEECTTSHHHHSSTTHHHHHTTSCE------------------------
T ss_pred HHhc-----CC-----------------CCEEEEcCccchhhhhchHHHHHhCCcE------------------------
Confidence 9871 11 23444556677765544 3322 210
Q ss_pred ccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHH-HHhcCCCCCCCCcEEEEEEccccccCC
Q 005009 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQ-NLLQNPGLKVSGCIGALIIEPVVHAAG 633 (719)
Q Consensus 555 ~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~-~l~~~~~~~~~~~iAAvIvEPViqg~g 633 (719)
...++.++ + .-| .+.+++ .+.+.. ...+.++++|++++. + ..
T Consensus 111 ----~~~v~~~~-~-----------~~d------------------~~~l~~~~i~~~~-~~~~~~~~~v~~~~~-~-~t 153 (356)
T 1v72_A 111 ----LMTVDGPA-A-----------KLD------------------IVRLRERTREKVG-DVHTTQPACVSITQA-T-EV 153 (356)
T ss_dssp ----EEECCCGG-G-----------CCC------------------HHHHHHHTTSSTT-CTTSCEEEEEEEESS-C-TT
T ss_pred ----EEEecCCC-C-----------eEc------------------HHHHHHHhhhcch-hhccCCceEEEEEcC-C-CC
Confidence 00111110 0 001 245666 664210 012237899999996 6 47
Q ss_pred ccccCCHHHHHHHHHHHHhcCCcEEEeccccCccc--cCccccccccC--CCccee--eehhccCCCccchh--eeEeCH
Q 005009 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR--LGVETTADLLG--CVPDIA--CYGKLLTGGVIPLA--ATLATN 705 (719)
Q Consensus 634 G~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGR--tG~~~a~e~~g--v~PDIv--tlgK~LggG~~Pls--avl~~~ 705 (719)
|. ++|.+++++|.++|++||++||+||++..++- .|.. ...++ ...|++ +++|. | .|+| ++++++
T Consensus 154 G~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~~~d~~~~s~sK~---g-~~~G~g~~~~~~ 226 (356)
T 1v72_A 154 GS-IYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCS--PAEMTWKAGVDALSFGATKN---G-VLAAEAIVLFNT 226 (356)
T ss_dssp SC-CCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCC--TTTTTGGGTCCEEEECCGGG---T-CSSCEEEEESSG
T ss_pred Cc-cCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCC--HHHhhhhhcCCEEEEecccC---C-CcCccEEEEECH
Confidence 76 46889999999999999999999999974311 1211 11111 135665 47887 3 3888 566688
Q ss_pred HHHhhh
Q 005009 706 AVFDSF 711 (719)
Q Consensus 706 ~i~~~~ 711 (719)
++++.+
T Consensus 227 ~~~~~~ 232 (356)
T 1v72_A 227 SLATEM 232 (356)
T ss_dssp GGHHHH
T ss_pred HHHhhH
Confidence 887654
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.5e-12 Score=137.68 Aligned_cols=215 Identities=10% Similarity=0.015 Sum_probs=139.8
Q ss_pred CCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChH
Q 005009 392 DQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGS 471 (719)
Q Consensus 392 ~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGs 471 (719)
.+|+ .+|||.++.. .++ . +|+|.+|+.++++..+... ..+..+...+|.++|++..+-. .+.++|+++|+
T Consensus 23 ~~~~----~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~~-~~y~~~~~~~lr~~la~~~g~~-~~~i~~t~g~~ 92 (360)
T 3hdo_A 23 PDIA----SWIKLNTNEN--PYP-P-SPEVVKAILEELGPDGAAL-RIYPSASSQKLREVAGELYGFD-PSWIIMANGSD 92 (360)
T ss_dssp SCCT----TSEECSSCCC--SSC-C-CHHHHHHHHHHHTTTCGGG-GSCCCSSCHHHHHHHHHHHTCC-GGGEEEESSHH
T ss_pred cccc----ceeeccCCCC--CCC-C-CHHHHHHHHHHHhcccchh-hcCCCCchHHHHHHHHHHhCcC-cceEEEcCCHH
Confidence 4566 8999988653 343 5 8999999999998742110 0122222357888888877632 36899999999
Q ss_pred HHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCC
Q 005009 472 TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPP 551 (719)
Q Consensus 472 EA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p 551 (719)
+|++.+++... +. ..+|+....+||+........ |..
T Consensus 93 ~al~~~~~~l~-----~~----------------gd~Vl~~~p~~~~~~~~~~~~-g~~--------------------- 129 (360)
T 3hdo_A 93 EVLNNLIRAFA-----AE----------------GEEIGYVHPSYSYYGTLAEVQ-GAR--------------------- 129 (360)
T ss_dssp HHHHHHHHHHC-----CT----------------TCEEEEESSSCTHHHHHHHHH-TCE---------------------
T ss_pred HHHHHHHHHHh-----CC----------------CCEEEEcCCChHHHHHHHHHC-CCE---------------------
Confidence 99999999761 11 147999999999854332221 110
Q ss_pred cccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccccc
Q 005009 552 TVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHA 631 (719)
Q Consensus 552 ~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg 631 (719)
...++..+.+ . ++ .+.+ ....+ +++++.. +.
T Consensus 130 -------~~~v~~~~~~--------------------------~--------~~-~l~~----~~~~~--~v~i~~p-~n 160 (360)
T 3hdo_A 130 -------VRTFGLTGDF--------------------------R--------IA-GFPE----RYEGK--VFFLTTP-NA 160 (360)
T ss_dssp -------EEEECBCTTS--------------------------S--------BT-TCCS----SBCSS--EEEEESS-CT
T ss_pred -------EEEeeCCCCC--------------------------C--------HH-HHHh----hcCCC--EEEEeCC-CC
Confidence 0011111000 0 00 1111 11123 4555544 78
Q ss_pred CCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccC-CCccchheeEeCHHHHhh
Q 005009 632 AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT-GGVIPLAATLATNAVFDS 710 (719)
Q Consensus 632 ~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lg-gG~~Plsavl~~~~i~~~ 710 (719)
..|.+.+ .++++++|+++|+++|+||++++|+..+.....+.++....+.+++|.+| +| +++|++++++++.+.
T Consensus 161 ptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~ 235 (360)
T 3hdo_A 161 PLGPSFP----LEYIDELARRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSKSYSLAG-MRIGLAIARPEVIAA 235 (360)
T ss_dssp TTCCCCC----HHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTTSCTT-SCCEEEECCHHHHHH
T ss_pred CCCCCcC----HHHHHHHHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchHhhcCCc-cceeeEeeCHHHHHH
Confidence 8888888 67899999999999999999998854443333344455556668999997 67 799999999999887
Q ss_pred hcC
Q 005009 711 FVG 713 (719)
Q Consensus 711 ~~~ 713 (719)
+..
T Consensus 236 ~~~ 238 (360)
T 3hdo_A 236 LDK 238 (360)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=3.2e-12 Score=136.51 Aligned_cols=213 Identities=11% Similarity=0.070 Sum_probs=139.6
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcc---cc---cCCCCCChHHHHHHHH-HHhccCCCCCCeEEEeCChHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG---HV---MFPENVYEPALECAEL-LLQGVGKGWASRAYFSDNGST 472 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~---~~---~~~~~~~~~~~~Lae~-L~~~~~~~~~~rv~f~~SGsE 472 (719)
.|||+.+ +.++. +|++.+|+.+++.... +. .......+...++.++ |++.++. +.++|+++|++
T Consensus 10 i~ld~~~-----~~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~---~~v~~~~g~t~ 80 (371)
T 2e7j_A 10 INIDPLQ-----TGGKL-TEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGC---DVARVTNGARE 80 (371)
T ss_dssp EECCHHH-----HTCCC-CHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTS---SEEEEESSHHH
T ss_pred EEecccc-----cCCCC-CHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCC---CEEEEeCChHH
Confidence 5777633 45778 9999999999987642 10 1111235667889999 9998874 38999999999
Q ss_pred HHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCc
Q 005009 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (719)
Q Consensus 473 A~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (719)
|++.+++.++ +. ..+|+....+||+.... +...|..
T Consensus 81 a~~~~~~~~~-----~~----------------gd~vl~~~~~~~~~~~~-~~~~g~~---------------------- 116 (371)
T 2e7j_A 81 AKFAVMHSLA-----KK----------------DAWVVMDENCHYSSYVA-AERAGLN---------------------- 116 (371)
T ss_dssp HHHHHHHHHC-----CT----------------TCEEEEETTCCHHHHHH-HHHTTCE----------------------
T ss_pred HHHHHHHHHh-----CC----------------CCEEEEccCcchHHHHH-HHHcCCe----------------------
Confidence 9999999872 11 24799999999986544 2222210
Q ss_pred ccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 005009 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (719)
Q Consensus 553 ~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~ 632 (719)
...++.|. +. + + .-| .+.+++.+.+. ...+++++|++++. +..
T Consensus 117 ------~~~v~~~~--------------~~-~--~--~~d--------~~~l~~~l~~~---~~~~~~~~v~~~~~-~np 159 (371)
T 2e7j_A 117 ------IALVPKTD--------------YP-D--Y--AIT--------PENFAQTIEET---KKRGEVVLALITYP-DGN 159 (371)
T ss_dssp ------EEEECCCC--------------TT-T--C--CCC--------HHHHHHHHHHH---TTTSCEEEEEEESS-CTT
T ss_pred ------EEEeeccc--------------CC-C--C--CcC--------HHHHHHHHHhh---cccCCeEEEEEECC-CCC
Confidence 01111000 00 0 0 001 24566666531 11146888999997 899
Q ss_pred CccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceee--ehhccCCCccchheeEeCHHHHhh
Q 005009 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLATNAVFDS 710 (719)
Q Consensus 633 gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvt--lgK~LggG~~Plsavl~~~~i~~~ 710 (719)
.|.+.+ +++|.++|++||+++|+||+++. |..+ +....+ .+|+++ ++|.+++| .++|++++++++++.
T Consensus 160 tG~~~~----~~~i~~~~~~~~~~li~D~a~~~-~~~~--~~~~~~--~~di~~~s~sK~~~~~-~~~G~~~~~~~~~~~ 229 (371)
T 2e7j_A 160 YGNLPD----VKKIAKVCSEYDVPLLVNGAYAI-GRMP--VSLKEI--GADFIVGSGHKSMAAS-GPIGVMGMKEEWAEI 229 (371)
T ss_dssp TCCCCC----HHHHHHHHHTTTCCEEEECTTTB-TTBC--CCHHHH--TCSEEEEEHHHHSSCC-SSCEEEEECTTTTTT
T ss_pred CcccCC----HHHHHHHHHHcCCeEEEECcccc-CCCC--CChhhc--CCCEEEecCCcCCCCC-CCcEEEEEechhhhh
Confidence 998887 69999999999999999999975 4443 223333 368774 59999998 499999999998776
Q ss_pred -hc
Q 005009 711 -FV 712 (719)
Q Consensus 711 -~~ 712 (719)
+.
T Consensus 230 ~~~ 232 (371)
T 2e7j_A 230 VLR 232 (371)
T ss_dssp TTC
T ss_pred hcc
Confidence 54
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.3e-11 Score=135.19 Aligned_cols=226 Identities=9% Similarity=-0.039 Sum_probs=142.5
Q ss_pred EEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcc-cccCC-CCCChHHHHHHHHHHhccCCC-CCCeEE
Q 005009 389 VYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFG-HVMFP-ENVYEPALECAELLLQGVGKG-WASRAY 465 (719)
Q Consensus 389 l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~-~~~~~-~~~~~~~~~Lae~L~~~~~~~-~~~rv~ 465 (719)
+.+.+|+ .+|||.+|.. .++ . +|+|.+|+.+++.... ..... ....+....+++.+.+..+.. ..+.++
T Consensus 38 ~~~~~g~----~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i~ 109 (437)
T 3g0t_A 38 LEKATGT----KFCRMEMGVP--GLP-A-PQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPARACV 109 (437)
T ss_dssp HHHHHTC----CCEECCCCSC--CSC-C-CHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEE
T ss_pred HHHhcCC----CEEeccCcCC--CCC-C-CHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCcccEE
Confidence 4567788 9999999864 454 5 8999999999987522 11111 112334445555554332210 136899
Q ss_pred EeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcce--EEEEEeCCcccCccccccccCCCCCCCCCCCCCccC
Q 005009 466 FSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIEL--KVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSG 543 (719)
Q Consensus 466 f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~--kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~ 543 (719)
|+++|++|++.+++.. ..+ +. .. +|++...+||+....+... |..
T Consensus 110 ~t~g~t~al~~~~~~l-~~~--~~----------------gd~~~Vl~~~p~~~~~~~~~~~~-g~~------------- 156 (437)
T 3g0t_A 110 PTVGSMQGCFVSFLVA-NRT--HK----------------NREYGTLFIDPGFNLNKLQCRIL-GQK------------- 156 (437)
T ss_dssp EESHHHHHHHHHHHHH-TTS--CT----------------TCSCCEEEEESCCHHHHHHHHHH-TCC-------------
T ss_pred EeCCHHHHHHHHHHHH-hcC--CC----------------CCccEEEEeCCCcHhHHHHHHHc-CCE-------------
Confidence 9999999999999987 100 11 13 6999999999854433221 110
Q ss_pred CCcccCCCcccccCcceeecC-cchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEE
Q 005009 544 RGLFLDPPTVFMYNSKWILSL-PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGA 622 (719)
Q Consensus 544 ~~~~~~~p~~~~~~~~~~~~~-P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAA 622 (719)
...++. ++.+ .. ..+.+++.++. .++.+
T Consensus 157 ---------------~~~v~~~~~~~--------------------------~~---d~~~l~~~l~~-------~~~~~ 185 (437)
T 3g0t_A 157 ---------------FESFDLFEYRG--------------------------EK---LREKLESYLQT-------GQFCS 185 (437)
T ss_dssp ---------------CEEEEGGGGCT--------------------------TH---HHHHHHHHHTT-------TCCCE
T ss_pred ---------------EEEEeecCCCC--------------------------cc---CHHHHHHHHhc-------CCceE
Confidence 001111 1000 00 13567777742 23444
Q ss_pred E-EEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc---------ccccc-cCCCcceeeehhcc
Q 005009 623 L-IIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE---------TTADL-LGCVPDIACYGKLL 691 (719)
Q Consensus 623 v-IvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~---------~a~e~-~gv~PDIvtlgK~L 691 (719)
| |..| +...|.+. |.+.+++|.++|++||+++|+||++++|...|.. ..... .+....+.+++|.+
T Consensus 186 v~l~~p--~nptG~~~-~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~ 262 (437)
T 3g0t_A 186 IIYSNP--NNPTWQCM-TDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAF 262 (437)
T ss_dssp EEEESS--CTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTT
T ss_pred EEEeCC--CCCCCCcC-CHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCccCC
Confidence 4 4566 57677655 6778999999999999999999999986554432 22221 23333355899999
Q ss_pred C-CCccchheeEeCHHHHh-h
Q 005009 692 T-GGVIPLAATLATNAVFD-S 710 (719)
Q Consensus 692 g-gG~~Plsavl~~~~i~~-~ 710 (719)
| .| +++|++++++++++ .
T Consensus 263 ~~~G-~r~G~~~~~~~~~~~~ 282 (437)
T 3g0t_A 263 SYAG-QRIGVLMISGKLYERE 282 (437)
T ss_dssp SCGG-GCCEEEEECHHHHHCB
T ss_pred CCcc-ceeEEEEECHHHhhhh
Confidence 8 78 79999999999988 6
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.9e-12 Score=135.59 Aligned_cols=206 Identities=15% Similarity=0.063 Sum_probs=138.5
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlK 479 (719)
.|+|.. ..++. +|++.+|+.+++.. +.. ....+...+++++|++..+....+.+++++||++|++.+++
T Consensus 21 ~~l~~~------~~~~~-~~~v~~a~~~~~~~--~~~--~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~ 89 (386)
T 2dr1_A 21 YKLFTA------GPVAC-FPEVLEIMKVQMFS--HRS--KEYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIR 89 (386)
T ss_dssp SEECCS------SSCCC-CHHHHHHTTSCCCC--TTS--HHHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHH
T ss_pred ceeecC------CCcCC-cHHHHHHHhccccc--ccC--HHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHH
Confidence 577753 35677 99999999887653 110 01245677889999988774212469999999999999999
Q ss_pred HHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccc-cccCCCCCCCCCCCCCccCCCcccCCCcccccCc
Q 005009 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM-EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (719)
Q Consensus 480 lA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~gal-slt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 558 (719)
... +. ..+|++...+|||.+...+ ...|..
T Consensus 90 ~l~-----~~----------------gd~vl~~~~~~~~~~~~~~~~~~g~~---------------------------- 120 (386)
T 2dr1_A 90 NGV-----SK----------------GGKVLVTIIGAFGKRYKEVVESNGRK---------------------------- 120 (386)
T ss_dssp HHS-----CT----------------TCEEEEEESSHHHHHHHHHHHHTTCE----------------------------
T ss_pred Hhh-----cC----------------CCeEEEEcCCchhHHHHHHHHHhCCc----------------------------
Confidence 762 11 2479999999998432211 111100
Q ss_pred ceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccC
Q 005009 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (719)
Q Consensus 559 ~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~p 638 (719)
...++.+..+ ..| .+.+++.+++ ..++++|++++. ++..|.+.+
T Consensus 121 ~~~v~~~~~~-----------~~d------------------~~~l~~~l~~------~~~~~~v~~~~~-~nptG~~~~ 164 (386)
T 2dr1_A 121 AVVLEYEPGK-----------AVK------------------PEDLDDALRK------NPDVEAVTITYN-ETSTGVLNP 164 (386)
T ss_dssp EEEEECCTTC-----------CCC------------------HHHHHHHHHH------CTTCCEEEEESE-ETTTTEECC
T ss_pred eEEEecCCCC-----------CCC------------------HHHHHHHHhc------CCCCcEEEEEee-cCCcchhCC
Confidence 0111111100 011 2567777753 235778999987 888898876
Q ss_pred CHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeeh--hccCCCccchheeEeCHHHHhhh
Q 005009 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 639 p~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~LggG~~Plsavl~~~~i~~~~ 711 (719)
+++|.++|++||+++|+||+++ +|... +.... ..+|+++.+ |.++++ .++|++++++++++.+
T Consensus 165 ----l~~i~~l~~~~~~~li~D~a~~-~~~~~--~~~~~--~~~di~~~s~sK~~~~~-~g~G~~~~~~~~~~~~ 229 (386)
T 2dr1_A 165 ----LPELAKVAKEHDKLVFVDAVSA-MGGAD--IKFDK--WGLDVVFSSSQKAFGVP-PGLAIGAFSERFLEIA 229 (386)
T ss_dssp ----HHHHHHHHHHTTCEEEEECTTT-BTTBC--CCTTT--TTCSEEEEETTSTTCCC-SSCEEEEECHHHHHHH
T ss_pred ----HHHHHHHHHHcCCeEEEEcccc-ccCcc--ccccc--cCCcEEEEeccccccCC-CceEEEEECHHHHHHH
Confidence 8999999999999999999996 43321 22222 257999777 999976 3689999999988766
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.32 E-value=5.8e-12 Score=139.07 Aligned_cols=164 Identities=12% Similarity=-0.042 Sum_probs=119.0
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
+.++...+|.++|+++.+. +.+++++||++|++.|++.+. + ...+||+...+||+.
T Consensus 55 ~~~~~~~~l~~~la~~~g~---~~~v~~~sGt~A~~~~l~~~~-----~----------------~gd~vi~~~~~~~~~ 110 (421)
T 2ctz_A 55 IMNPTVDVLEKRLAALEGG---KAALATASGHAAQFLALTTLA-----Q----------------AGDNIVSTPNLYGGT 110 (421)
T ss_dssp TBCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHC-----C----------------TTCEEEECSCCCHHH
T ss_pred CCChHHHHHHHHHHHHhCC---CceEEecCHHHHHHHHHHHHh-----C----------------CCCEEEEeCCCchHH
Confidence 4567888999999999874 467889999999999999761 1 124799999999986
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecC-cchhhhcccccccccccCccchhhcccCchhHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSL-PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~ 598 (719)
......+... . |.....+ | .+|
T Consensus 111 ~~~~~~~~~~---~------------------------g~~~~~~~~--------------~~d---------------- 133 (421)
T 2ctz_A 111 FNQFKVTLKR---L------------------------GIEVRFTSR--------------EER---------------- 133 (421)
T ss_dssp HHHHHTHHHH---T------------------------TCEEEECCT--------------TCC----------------
T ss_pred HHHHHHHHHH---c------------------------CCEEEEECC--------------CCC----------------
Confidence 5443221100 0 0000111 1 111
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccccccc
Q 005009 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (719)
Q Consensus 599 ~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~ 678 (719)
.+.+++.+. .++++|++|++ ++..|.+.+ +++|.++|++||+++|+||+|+++|..+..+
T Consensus 134 --~~~l~~~i~--------~~~~~v~~~~~-~n~~G~~~~----l~~i~~~a~~~g~~livD~~~~~~g~~~~~~----- 193 (421)
T 2ctz_A 134 --PEEFLALTD--------EKTRAWWVESI-GNPALNIPD----LEALAQAAREKGVALIVDNTFGMGGYLLRPL----- 193 (421)
T ss_dssp --HHHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHHHHTCEEEEECGGGGGGTSCCGG-----
T ss_pred --HHHHHHhhc--------cCCeEEEEECC-CCCCCcccC----HHHHHHHHHHcCCEEEEECCcccccccCCcc-----
Confidence 245666664 36889999998 999998887 9999999999999999999998888766654
Q ss_pred CCCccee--eehhccCCCccchheeEeC
Q 005009 679 GCVPDIA--CYGKLLTGGVIPLAATLAT 704 (719)
Q Consensus 679 gv~PDIv--tlgK~LggG~~Plsavl~~ 704 (719)
+..+|++ +++|.+++...++|+++++
T Consensus 194 ~~~~Di~~~s~~K~l~~~g~~~G~~~~~ 221 (421)
T 2ctz_A 194 AWGAALVTHSLTKWVGGHGAVIAGAIVD 221 (421)
T ss_dssp GGTCSEEEEETTTTTTCSSCCCCEEEEE
T ss_pred ccCCeEEEECCcccccCCCCcEEEEEEe
Confidence 3358998 7899999733688888775
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.7e-12 Score=139.42 Aligned_cols=196 Identities=13% Similarity=0.033 Sum_probs=131.4
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccC
Q 005009 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~ 497 (719)
+|+|.+|+.+++.. +.. ....+...++.++|++.++...-+.++|++||++|++.|++.+. .
T Consensus 35 ~~~v~~a~~~~~~~--~~~--~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~-----~--------- 96 (393)
T 3kgw_A 35 APRVLAAGSLRMIG--HMQ--KEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLL-----E--------- 96 (393)
T ss_dssp CHHHHHHTTCCCCC--TTS--HHHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHC-----C---------
T ss_pred CHHHHHHhcccccC--ccc--HHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcC-----C---------
Confidence 79999998876532 111 01134567888899888764322369999999999999999771 1
Q ss_pred CCccccCcceEEEEEeCCcccCccccc-cccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccc
Q 005009 498 KDTTEKCIELKVLALKGSYHGDTLGAM-EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHK 576 (719)
Q Consensus 498 ~~~~~~~~r~kII~~~~syHG~t~gal-slt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~ 576 (719)
...+||....+|||.....+ ...|.. ...++.+...
T Consensus 97 -------~gd~vl~~~~~~~~~~~~~~~~~~g~~----------------------------~~~~~~~~~~-------- 133 (393)
T 3kgw_A 97 -------PGDSFLTGTNGIWGMRAAEIADRIGAR----------------------------VHQMIKKPGE-------- 133 (393)
T ss_dssp -------TTCEEEEEESSHHHHHHHHHHHHTTCE----------------------------EEEEECCTTC--------
T ss_pred -------CCCEEEEEeCCchhHHHHHHHHHcCCc----------------------------eEEEeCCCCC--------
Confidence 12478888888887432211 111110 0111111000
Q ss_pred cccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCc
Q 005009 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656 (719)
Q Consensus 577 ~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gil 656 (719)
..| .+.+++.+.+ .++.+|++++. ++..|.+.+ +++|+++|++||++
T Consensus 134 ---~~d------------------~~~l~~~i~~-------~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~~ 180 (393)
T 3kgw_A 134 ---HYT------------------LQEVEEGLAQ-------HKPVLLFLVHG-ESSTGVVQP----LDGFGELCHRYQCL 180 (393)
T ss_dssp ---CCC------------------HHHHHHHHHH-------HCCSEEEEESE-ETTTTEECC----CTTHHHHHHHTTCE
T ss_pred ---CCC------------------HHHHHHHHhh-------CCCcEEEEecc-CCcchhhcc----HHHHHHHHHHcCCE
Confidence 001 3567777763 25678999997 999998887 88999999999999
Q ss_pred EEEeccccCccccCccccccccCCCcceeeeh--hccCCCccchheeEeCHHHHhhhcC
Q 005009 657 VIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 657 LI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
+|+||+++ +| +..+..+.++ +|+++++ |+++|+ .++|++++++++++.+..
T Consensus 181 li~De~~~-~g--~~~~~~~~~~--~d~~~~s~sK~~~~~-~g~g~~~~~~~~~~~~~~ 233 (393)
T 3kgw_A 181 LLVDSVAS-LG--GVPIYMDQQG--IDIMYSSSQKVLNAP-PGISLISFNDKAKYKVYS 233 (393)
T ss_dssp EEEECTTT-TT--TSCCCTTTTT--CCEEEEESSSTTCCC-SSCEEEEECHHHHHHHHT
T ss_pred EEEECCcc-cc--CcccchhhcC--CCEEEecCcccccCC-CceeEEEECHHHHHHHhc
Confidence 99999996 33 3344444443 5777666 999887 679999999999888753
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1e-11 Score=135.79 Aligned_cols=170 Identities=12% Similarity=0.026 Sum_probs=119.9
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
+.++...+|.++|+++.+. +.++|++||++|++.|++.+. +. ..+||+....|||.
T Consensus 63 ~~~~~~~~l~~~la~~~g~---~~~~~~~sGt~A~~~al~~~~-----~~----------------gd~Vi~~~~~y~~~ 118 (392)
T 3qhx_A 63 TGNPTRTALEAALAAVEDA---AFGRAFSSGMAAADCALRAML-----RP----------------GDHVVIPDDAYGGT 118 (392)
T ss_dssp TCCHHHHHHHHHHHHHTTC---SEEEEESSHHHHHHHHHHHHC-----CT----------------TCEEEEETTCCHHH
T ss_pred CCChHHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHHh-----CC----------------CCEEEEeCCCcchH
Confidence 4577888999999999873 589999999999999999761 11 24799999999874
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
......... . . |.....+| .+|
T Consensus 119 ~~~~~~~~~-----~---------~-------------g~~~~~v~--------------~~d----------------- 140 (392)
T 3qhx_A 119 FRLIDKVFT-----G---------W-------------NVEYTPVA--------------LAD----------------- 140 (392)
T ss_dssp HHHHHHTGG-----G---------G-------------TCEEEEEC--------------TTC-----------------
T ss_pred HHHHHHHHH-----h---------c-------------CcEEEEeC--------------CCC-----------------
Confidence 222111100 0 0 00001111 111
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccC
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~g 679 (719)
.+.+++.+. .++++|++|++ ++..|.+.+ +++|.++|++||++||+||+|+.+ +.....+
T Consensus 141 -~~~l~~~i~--------~~~~~v~~~~~-~nptG~~~~----l~~i~~la~~~g~~li~D~~~~~~------~~~~~~~ 200 (392)
T 3qhx_A 141 -LDAVRAAIR--------PTTRLIWVETP-TNPLLSIAD----IAGIAQLGADSSAKVLVDNTFASP------ALQQPLS 200 (392)
T ss_dssp -HHHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTCT------TTCCGGG
T ss_pred -HHHHHHhhC--------CCCeEEEEECC-CCCCcEEec----HHHHHHHHHHcCCEEEEECCCccc------ccCChHH
Confidence 255666664 37899999997 899998877 999999999999999999999621 2334445
Q ss_pred CCcceee--ehhccCCC-ccchheeEeC-HHHHhhh
Q 005009 680 CVPDIAC--YGKLLTGG-VIPLAATLAT-NAVFDSF 711 (719)
Q Consensus 680 v~PDIvt--lgK~LggG-~~Plsavl~~-~~i~~~~ 711 (719)
..+|+++ ++|.+|++ .+.+|+++++ +++++.+
T Consensus 201 ~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l 236 (392)
T 3qhx_A 201 LGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSF 236 (392)
T ss_dssp GTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHH
T ss_pred hCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHH
Confidence 6789997 99999874 2567888887 5777655
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.6e-12 Score=137.63 Aligned_cols=197 Identities=11% Similarity=0.051 Sum_probs=130.2
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCC-CCeEEEeCChHHHHHHHHHHHHHHhhcccccccccc
Q 005009 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGW-ASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~-~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~ 496 (719)
+|+|++|+.+++.. +.. ....+...++.++|++..+.+. .+.+++++||++|++.+++.+. ..
T Consensus 31 ~~~v~~a~~~~~~~--~~~--~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~-----~~------- 94 (376)
T 3f0h_A 31 SEEVRAIGAEQVPY--FRT--TEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCF-----TK------- 94 (376)
T ss_dssp CHHHHHHHTSCCCC--CSS--HHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHC-----CT-------
T ss_pred cHHHHHHhcCCCCC--CCC--HHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhcc-----CC-------
Confidence 78999998887632 211 0112456678888888765421 1345668999999999999772 11
Q ss_pred CCCccccCcceEEEEEeCCcccCccccccc-cCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhccccc
Q 005009 497 GKDTTEKCIELKVLALKGSYHGDTLGAMEA-QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEH 575 (719)
Q Consensus 497 ~~~~~~~~~r~kII~~~~syHG~t~galsl-t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~ 575 (719)
..+||+...+||+........ .+.. ...++.+..+.
T Consensus 95 ---------gd~vi~~~~~~~~~~~~~~~~~~g~~----------------------------~~~v~~~~~~~------ 131 (376)
T 3f0h_A 95 ---------KDKVLVIDGGSFGHRFVQLCEIHEIP----------------------------YVALKLEHGKK------ 131 (376)
T ss_dssp ---------TCCEEEEESSHHHHHHHHHHHHTTCC----------------------------EEEEECCTTCC------
T ss_pred ---------CCeEEEEeCChhhHHHHHHHHHcCCc----------------------------eEEEeCCCCCC------
Confidence 247888988899854321111 1100 01111111110
Q ss_pred ccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCC
Q 005009 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655 (719)
Q Consensus 576 ~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gi 655 (719)
.| .+.+++.+ ..++.+|++++. ++..|.+.+ +++|.++|++||+
T Consensus 132 -----~d------------------~~~l~~~~--------~~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~ 175 (376)
T 3f0h_A 132 -----LT------------------KEKLYEYD--------NQNFTGLLVNVD-ETSTAVLYD----TMMIGEFCKKNNM 175 (376)
T ss_dssp -----CC------------------HHHHHTTT--------TSCCCEEEEESE-ETTTTEECC----HHHHHHHHHHTTC
T ss_pred -----CC------------------HHHHHHhh--------ccCceEEEEecc-cCCcceecC----HHHHHHHHHHcCC
Confidence 01 23454433 235778999987 899999887 9999999999999
Q ss_pred cEEEeccccCccccCccccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 656 PVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 656 lLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
++|+||+|+++++. +..+.+|+...+.+++|.++|+ .+++++++++++++.+..
T Consensus 176 ~li~D~~~~~~~~~---~~~~~~~~d~~~~s~~K~l~~~-~G~g~~~~~~~~~~~~~~ 229 (376)
T 3f0h_A 176 FFVCDCVSAFLADP---FNMNECGADVMITGSQKVLACP-PGISVIVLAPRGVERVEK 229 (376)
T ss_dssp EEEEECTTTTTTSC---CCHHHHTCSEEEEETTTTTCCC-SSCEEEEECHHHHHHHHT
T ss_pred EEEEEcCccccCcc---ccccccCccEEEecCcccccCC-CceEEEEECHHHHHHhhc
Confidence 99999999876553 4555666655555677999876 578999999999887753
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.31 E-value=5.4e-12 Score=136.67 Aligned_cols=207 Identities=9% Similarity=-0.004 Sum_probs=127.8
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhh-cccccC-CCC--CChHHHHHH----HHHHhccCCCCCCeEEEeCChH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAAR-FGHVMF-PEN--VYEPALECA----ELLLQGVGKGWASRAYFSDNGS 471 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~-~~~~~~-~~~--~~~~~~~La----e~L~~~~~~~~~~rv~f~~SGs 471 (719)
+|||+.++... - +|+|.+|+.++++. +.+... ..+ ..+....+. ++|++..+.. ...++++||+
T Consensus 24 ~~i~~~~~~~~-----~-~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~--~~~i~~~sGt 95 (407)
T 2dkj_A 24 EGLELIASENF-----V-SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAA--WANVQPHSGS 95 (407)
T ss_dssp TSEECCTTCCC-----C-CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS--EEECCCSSHH
T ss_pred cceeeccCCCC-----C-CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCC--cceEEecchH
Confidence 68998886543 3 89999999999864 322110 001 223222233 3777777632 2336788999
Q ss_pred HHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCc--cccccccCCCCCCCCCCCCCccCCCcccC
Q 005009 472 TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT--LGAMEAQAPSPYTGFLQQPWYSGRGLFLD 549 (719)
Q Consensus 472 EA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t--~galslt~~~~~~~~~~~~~~~~~~~~~~ 549 (719)
+|++.|++.+. .. ..+|+....+||+.. ..++...|.. +
T Consensus 96 ~a~~~~~~~~~-----~~----------------gd~Vl~~~~~~~~~~~~~~~~~~~g~~-----------------~- 136 (407)
T 2dkj_A 96 QANMAVYMALM-----EP----------------GDTLMGMDLAAGGHLTHGSRVNFSGKL-----------------Y- 136 (407)
T ss_dssp HHHHHHHHHHC-----CT----------------TCEEEEECGGGTCCGGGTCTTSHHHHH-----------------S-
T ss_pred HHHHHHHHHhc-----CC----------------CCEEEEecccccCccchHHHHHhcCce-----------------E-
Confidence 99999999871 11 247888888887752 2222222210 0
Q ss_pred CCcccccCcceeecCc---chhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE-
Q 005009 550 PPTVFMYNSKWILSLP---EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII- 625 (719)
Q Consensus 550 ~p~~~~~~~~~~~~~P---~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIv- 625 (719)
..++++ +.+ ..| .+.+++.+.+ .++++|++
T Consensus 137 ----------~~~~~~~~~~~~-----------~~d------------------~~~l~~~l~~-------~~~~~v~~~ 170 (407)
T 2dkj_A 137 ----------KVVSYGVRPDTE-----------LID------------------LEEVRRLALE-------HRPKVIVAG 170 (407)
T ss_dssp ----------EEEEECCCTTTS-----------SCC------------------HHHHHHHHHH-------HCCSEEEEC
T ss_pred ----------EEEecCCCcccC-----------ccC------------------HHHHHHHHhh-------cCCeEEEEe
Confidence 001110 000 011 2556667652 13456777
Q ss_pred ccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccC-ccccCccccccccCCCccee--eehhccCCCccchheeE
Q 005009 626 EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG-FWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATL 702 (719)
Q Consensus 626 EPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTG-fGRtG~~~a~e~~gv~PDIv--tlgK~LggG~~Plsavl 702 (719)
+|. +| ...+ +++|.++|++||+++|+||+|++ +...|..... +. .+|++ +++|+|+|+ .+|+++
T Consensus 171 ~p~-~~---~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~--~~-~~di~~~s~sK~l~g~--~~G~~~ 237 (407)
T 2dkj_A 171 ASA-YP---RFWD----FKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNP--LP-YAHVVTSTTHKTLRGP--RGGLIL 237 (407)
T ss_dssp CSS-CC---SCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCC--TT-TCSEEEEESSGGGCCC--SCEEEE
T ss_pred ccc-cC---CCCC----HHHHHHHHHHcCCEEEEEccccccccccCccCCc--cc-cccEEEEeccccCCCC--CceEEE
Confidence 887 54 3333 89999999999999999999985 5455653321 12 27988 789999976 469999
Q ss_pred eC-HHHHhhhc
Q 005009 703 AT-NAVFDSFV 712 (719)
Q Consensus 703 ~~-~~i~~~~~ 712 (719)
++ +++++.+.
T Consensus 238 ~~~~~~~~~l~ 248 (407)
T 2dkj_A 238 SNDPELGKRID 248 (407)
T ss_dssp ESCHHHHHHHH
T ss_pred ECCHHHHHHHH
Confidence 99 78887653
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.9e-11 Score=138.17 Aligned_cols=208 Identities=12% Similarity=-0.011 Sum_probs=135.7
Q ss_pred CCCCHHHHHHHHHhhhhcccccCCC-CCC----hHHHHHHHHHHhccCCCCC--CeE--EEeCChHHHHHHHHHHHHHHh
Q 005009 415 ATLQIELARDMGYTAARFGHVMFPE-NVY----EPALECAELLLQGVGKGWA--SRA--YFSDNGSTAIEIALKMAFRKF 485 (719)
Q Consensus 415 H~~hP~V~~Av~~q~~~~~~~~~~~-~~~----~~~~~Lae~L~~~~~~~~~--~rv--~f~~SGsEA~E~AlKlA~r~~ 485 (719)
|+ ++.+.+++.+++......+... ... +...++.++|++..+.. . +.+ +|+++|++|++.|++.+ +..
T Consensus 107 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~-~~~~~v~~~~t~ggt~a~~~al~a~-~~~ 183 (514)
T 3mad_A 107 HG-DEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGD-AAGGTVCGTVTSGGTESLLLAMKTY-RDW 183 (514)
T ss_dssp CC-CHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGG-GGTSCCEEEEESSHHHHHHHHHHHH-HHH
T ss_pred CC-CCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCC-CccCCcceEEcCcHHHHHHHHHHHH-HHH
Confidence 45 7888888887776543322111 112 23345667777777632 1 356 99999999999999999 444
Q ss_pred hcc-ccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecC
Q 005009 486 SFD-HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSL 564 (719)
Q Consensus 486 ~~~-~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 564 (719)
.++ +| ..+.+||+...+|++. ..++...|.. ...++.
T Consensus 184 g~~~~g-------------~~~d~Vi~~~~~~~~~-~~~~~~~G~~----------------------------v~~v~~ 221 (514)
T 3mad_A 184 ARATKG-------------ITAPEAVVPVSAHAAF-DKAAQYFGIK----------------------------LVRTPL 221 (514)
T ss_dssp HHHHHC-------------CSSCEEEEETTSCTHH-HHHHHHHTCE----------------------------EEEECB
T ss_pred hhhhcC-------------CCCCeEEEeCccchHH-HHHHHHcCCe----------------------------eEEeee
Confidence 322 11 2345788877777762 2222222211 111221
Q ss_pred cchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHH
Q 005009 565 PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQR 644 (719)
Q Consensus 565 P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~ 644 (719)
...++ -| .+.|++.+. .++++|+++.. +...|.+.+ ++
T Consensus 222 ~~~~~-----------~d------------------~~~Le~~i~--------~~~~~v~~~~~-~nptG~~~~----l~ 259 (514)
T 3mad_A 222 DADYR-----------AD------------------VAAMREAIT--------PNTVVVAGSAP-GYPHGVVDP----IP 259 (514)
T ss_dssp CTTSC-----------BC------------------HHHHHHHCC--------TTEEEEEEETT-CTTTCCCCC----HH
T ss_pred CCCCC-----------CC------------------HHHHHHHhc--------cCCEEEEEeCC-CCCCccccC----HH
Confidence 11110 01 356777664 36789999997 888899877 89
Q ss_pred HHHHHHHhcCCcEEEeccccCc-----cccCc---cccccccCCCcceeeehhccCCCccchheeEeCHHHHhh
Q 005009 645 ILVKECQNRKIPVIFDEVFTGF-----WRLGV---ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDS 710 (719)
Q Consensus 645 ~Lr~Lc~k~gilLI~DEVqTGf-----GRtG~---~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~ 710 (719)
+|.++|++||++||+||+++|| +++|. .+.+...|+...+.++.|.+.+| .++|+++++++....
T Consensus 260 ~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~-~~~g~~~~~~~~~~~ 332 (514)
T 3mad_A 260 EIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGA-KGTSVILYRRPDLLH 332 (514)
T ss_dssp HHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCCC-SSCEEEEESSHHHHT
T ss_pred HHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcccccCCCCcEEEECchhccCCC-CCeEEEEEeCHHHhc
Confidence 9999999999999999999986 66776 56666677644444567998888 689999998876643
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=5.1e-12 Score=139.07 Aligned_cols=172 Identities=11% Similarity=0.066 Sum_probs=114.8
Q ss_pred CCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCccc
Q 005009 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (719)
Q Consensus 439 ~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG 518 (719)
.+.++...+|+++|+++.+. +.+++++||++|++++++++ +. ..+||+....|||
T Consensus 63 r~~~p~~~~l~~~la~l~g~---~~~~~~~sG~~Ai~~~~~l~------~~----------------gd~Vi~~~~~y~~ 117 (400)
T 3nmy_A 63 RTHNPTRFAYERCVAALEGG---TRAFAFASGMAATSTVMELL------DA----------------GSHVVAMDDLYGG 117 (400)
T ss_dssp TTCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHTTS------CT----------------TCEEEEESSCCHH
T ss_pred cCCCHHHHHHHHHHHHHhCC---CCEEEecCHHHHHHHHHHHc------CC----------------CCEEEEeCCCchH
Confidence 35678889999999998873 58999999999999865443 11 2378888888887
Q ss_pred Cccccccc-cCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHH
Q 005009 519 DTLGAMEA-QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLA 597 (719)
Q Consensus 519 ~t~galsl-t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~ 597 (719)
.......+ ... . |.....+| ++|
T Consensus 118 ~~~~~~~~~~~~--------------~-------------g~~~~~v~--------------~~d--------------- 141 (400)
T 3nmy_A 118 TFRLFERVRRRT--------------A-------------GLDFSFVD--------------LTD--------------- 141 (400)
T ss_dssp HHHHHHHTHHHH--------------H-------------CCEEEEEC--------------TTS---------------
T ss_pred HHHHHHHhhHhh--------------c-------------CeEEEEEC--------------CCC---------------
Confidence 43322111 000 0 00000111 122
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccc
Q 005009 598 SIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677 (719)
Q Consensus 598 ~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~ 677 (719)
.+.+++.+. .++++|++|++ ++..|.+.+ +++|+++|++||++||+||+++. |.++....
T Consensus 142 ---~~~l~~~i~--------~~~~~v~~e~~-~np~G~~~~----l~~i~~la~~~g~~livDe~~~~----~~~~~~~~ 201 (400)
T 3nmy_A 142 ---PAAFKAAIR--------ADTKMVWIETP-TNPMLKLVD----IAAIAVIARKHGLLTVVDNTFAS----PMLQRPLS 201 (400)
T ss_dssp ---HHHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTH----HHHCCGGG
T ss_pred ---HHHHHHHhc--------cCCCEEEEECC-CCCCCeeec----HHHHHHHHHHcCCEEEEECCCcc----cccCChhh
Confidence 255666664 36899999997 999999886 99999999999999999999952 22222223
Q ss_pred cCCCcceeeehhccCCCccchhe--eE-eCHHHHhhh
Q 005009 678 LGCVPDIACYGKLLTGGVIPLAA--TL-ATNAVFDSF 711 (719)
Q Consensus 678 ~gv~PDIvtlgK~LggG~~Plsa--vl-~~~~i~~~~ 711 (719)
+|+.+.+.+++|.++|+..++++ ++ .++++++.+
T Consensus 202 ~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l 238 (400)
T 3nmy_A 202 LGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQM 238 (400)
T ss_dssp GTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHH
T ss_pred cCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHH
Confidence 45444445699999976567766 33 366676654
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.30 E-value=6.4e-12 Score=137.97 Aligned_cols=220 Identities=10% Similarity=0.034 Sum_probs=138.0
Q ss_pred eeeeccccccccCCCCCCCHHH--HHHHHHhhhhcccccCCCCCCh-HHHHHHHHHHhcc-----CCCCCCe---EEEeC
Q 005009 400 QQFDACASWWTQGPDATLQIEL--ARDMGYTAARFGHVMFPENVYE-PALECAELLLQGV-----GKGWASR---AYFSD 468 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V--~~Av~~q~~~~~~~~~~~~~~~-~~~~Lae~L~~~~-----~~~~~~r---v~f~~ 468 (719)
.++||.+|... .+|+ +|.+ .+++.++++...... +... -..+|.+.|++++ +-. .+. +++++
T Consensus 48 ~~i~l~~g~~~-~~~~--~~~~~~~~a~~~~~~~~~~~~---y~~~~g~~~lr~~ia~~~~~~~~~~~-~~~~~~i~~t~ 120 (430)
T 2x5f_A 48 TTYNATIGMAT-NKDG--KMFASSLDAMFNDLTPDEIFP---YAPPQGIEELRDLWQQKMLRDNPELS-IDNMSRPIVTN 120 (430)
T ss_dssp CSEECCCSSCE-ETTE--ECCCHHHHTTBSSCCGGGTSS---CCCTTCCHHHHHHHHHHHHHHCTTCC-GGGBCCCEEES
T ss_pred CcEEeeeeecc-CCCC--chhhHHHHHHHHhcCcccccc---cCCCCCCHHHHHHHHHHHhccCcccC-CCccceEEEcC
Confidence 78999887654 5774 5667 888887775411111 1111 1234555555544 322 256 99999
Q ss_pred ChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCccc
Q 005009 469 NGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548 (719)
Q Consensus 469 SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~ 548 (719)
+|++|++.+++... .. ..+|+....+||+....+....|..
T Consensus 121 g~~~al~~~~~~l~-----~~----------------gd~Vl~~~p~y~~~~~~~~~~~g~~------------------ 161 (430)
T 2x5f_A 121 ALTHGLSLVGDLFV-----NQ----------------DDTILLPEHNWGNYKLVFNTRNGAN------------------ 161 (430)
T ss_dssp HHHHHHHHHHHHHC-----CT----------------TCEEEEESSCCTHHHHHHTTTTCCE------------------
T ss_pred CchHHHHHHHHHHh-----CC----------------CCEEEEcCCcCccHHHHHHHhcCCe------------------
Confidence 99999999999771 11 2479999999998643322201110
Q ss_pred CCCcccccCcceeecCcc-hhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcc
Q 005009 549 DPPTVFMYNSKWILSLPE-WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEP 627 (719)
Q Consensus 549 ~~p~~~~~~~~~~~~~P~-~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEP 627 (719)
...++... .+ ..| .+.+++.+.+ .+....+.+|..|
T Consensus 162 ----------~~~~~~~~~~~-----------~~d------------------~~~l~~~l~~----~~~~~~~v~i~~p 198 (430)
T 2x5f_A 162 ----------LQTYPIFDKDG-----------HYT------------------TDSLVEALQS----YNKDKVIMILNYP 198 (430)
T ss_dssp ----------EEEECCBCTTS-----------CBC------------------SHHHHHHHHH----CCSSEEEEEECSS
T ss_pred ----------EEEEeccCccC-----------CcC------------------HHHHHHHHHh----cCCCCEEEEEcCC
Confidence 00111110 00 001 2456667763 1123344556667
Q ss_pred ccccCCccccCCHHHHHHHHHHHHh-----cCCcEEEeccccCccccCccc-cc--cccCCCcc------eeeehhccC-
Q 005009 628 VVHAAGGMHMVDPLFQRILVKECQN-----RKIPVIFDEVFTGFWRLGVET-TA--DLLGCVPD------IACYGKLLT- 692 (719)
Q Consensus 628 Viqg~gG~~~pp~~fl~~Lr~Lc~k-----~gilLI~DEVqTGfGRtG~~~-a~--e~~gv~PD------IvtlgK~Lg- 692 (719)
+...|.+ .|.+++++|.++|++ ||+++|+||++++|.+.|..+ .. ...+..++ +.+++|.+|
T Consensus 199 --~nptG~~-~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~ 275 (430)
T 2x5f_A 199 --NNPTGYT-PTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFA 275 (430)
T ss_dssp --CTTTCCC-CCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTC
T ss_pred --CCCCCCc-CCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCCCC
Confidence 6667764 588999999999999 999999999999998877632 22 22233454 347899998
Q ss_pred CCccchheeEe---CHHHHhhhc
Q 005009 693 GGVIPLAATLA---TNAVFDSFV 712 (719)
Q Consensus 693 gG~~Plsavl~---~~~i~~~~~ 712 (719)
.| +++|++++ ++++++.+.
T Consensus 276 ~G-~riG~~~~~~~~~~~~~~l~ 297 (430)
T 2x5f_A 276 WG-FRVGFMTFGTSDQTTKEVLE 297 (430)
T ss_dssp GG-GCCEEEEEBCCCHHHHHHHH
T ss_pred CC-CCeEEEEEecCCHHHHHHHH
Confidence 78 79999999 999888764
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=4.7e-12 Score=135.47 Aligned_cols=192 Identities=12% Similarity=0.085 Sum_probs=130.3
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCC--CeEEEeCChHHHHHHHHHHHHHHhhccccccccc
Q 005009 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWA--SRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDF 495 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~--~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~ 495 (719)
+|++.+|+.+++..... ....+...++.++|++..+.. . +.++|+++|++|++ +++.++
T Consensus 14 ~~~v~~a~~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~-~~~~~v~~~~g~t~al~-~~~~~~------------- 74 (384)
T 3zrp_A 14 KEDVLVAGLENNVGFTS----KEFVEALAYSLKGLRYVMGAS-KNYQPLIIPGGGTSAME-SVTSLL------------- 74 (384)
T ss_dssp CHHHHHHTTCCSCCTTS----HHHHHHHHHHHHHHHHHHTCC-TTSEEEEEESCHHHHHH-HGGGGC-------------
T ss_pred CHHHHHHhhcccccccc----HHHHHHHHHHHHHHHHHhCCC-CCCcEEEEcCCcHHHHH-HHHhhc-------------
Confidence 79999998887643211 112455678888888887643 3 57999999999999 887551
Q ss_pred cCCCccccCcceEEEEEeCCcccCcccccc-ccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccc
Q 005009 496 LGKDTTEKCIELKVLALKGSYHGDTLGAME-AQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVE 574 (719)
Q Consensus 496 ~~~~~~~~~~r~kII~~~~syHG~t~gals-lt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~ 574 (719)
....+||..+.+|||.....+. ..|.. ...++.+...
T Consensus 75 --------~~gd~vi~~~~~~~~~~~~~~~~~~g~~----------------------------~~~v~~~~~~------ 112 (384)
T 3zrp_A 75 --------KPNDKILVVSNGVFGDRWEQIFKRYPVN----------------------------VKVLRPSPGD------ 112 (384)
T ss_dssp --------CTTCEEEEECSSHHHHHHHHHHTTSSCE----------------------------EEEECCSTTC------
T ss_pred --------CCCCEEEEecCCcchHHHHHHHHHcCCc----------------------------EEEecCCCCC------
Confidence 1134799999999995433221 11100 0111211100
Q ss_pred cccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcC
Q 005009 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK 654 (719)
Q Consensus 575 ~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~g 654 (719)
..| .+.+++.+.+ .++.+|++++. +...|.+.+ +++|.++|++||
T Consensus 113 -----~~d------------------~~~l~~~i~~-------~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~ 157 (384)
T 3zrp_A 113 -----YVK------------------PGEVEEEVRK-------SEYKLVALTHV-ETSTGVREP----VKDVINKIRKYV 157 (384)
T ss_dssp -----CCC------------------HHHHHHHHHH-------SCEEEEEEESE-ETTTTEECC----HHHHHHHHGGGE
T ss_pred -----CCC------------------HHHHHHHHHh-------CCCcEEEEeCC-CCCCceECc----HHHHHHHHHhcC
Confidence 001 3567777763 25889999997 999998887 999999999999
Q ss_pred CcEEEeccccCccccCccccccccCCCcceeeeh--hccCCCccchheeEeCHHHHhhh
Q 005009 655 IPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 655 ilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~LggG~~Plsavl~~~~i~~~~ 711 (719)
+++|+||+|+ +|.. .+.... ..+|+++++ |.++|+ .++|++++++++++.+
T Consensus 158 ~~li~D~a~~-~~~~--~~~~~~--~~~d~~~~s~~K~~~~~-~g~g~~~~~~~~~~~~ 210 (384)
T 3zrp_A 158 ELIVVDGVSS-VGAE--EVKAEE--WNVDVYLTASQKALGSA-AGLGLLLLSPKALSIL 210 (384)
T ss_dssp EEEEEECTTT-TTTS--CCCTTT--TTCSEEEEETTSTTCCC-SSEEEEEECHHHHHHH
T ss_pred CEEEEECccc-ccCc--cccccc--cCCCEEEecCcccccCC-CceEEEEECHHHHHHh
Confidence 9999999996 3221 122222 247888665 999887 5799999999998776
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=3.2e-11 Score=131.49 Aligned_cols=217 Identities=12% Similarity=0.021 Sum_probs=132.6
Q ss_pred eeeecccccccc-CCCCCCCHHHHHHHHHhhhhcccccCC--CCCChHHHHHHHHHHhc------cC--CCCCCeEEEeC
Q 005009 400 QQFDACASWWTQ-GPDATLQIELARDMGYTAARFGHVMFP--ENVYEPALECAELLLQG------VG--KGWASRAYFSD 468 (719)
Q Consensus 400 ~yLD~~sg~~~~-~lGH~~hP~V~~Av~~q~~~~~~~~~~--~~~~~~~~~Lae~L~~~------~~--~~~~~rv~f~~ 468 (719)
.+|||.+|.... .-.+. +|++.+|+.++++........ ....+....+++.+.+. .+ -. .+++++++
T Consensus 34 ~~i~l~~g~p~~~~~~~~-~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~-~~~v~~~~ 111 (416)
T 1bw0_A 34 PIIKLSVGDPTLDKNLLT-SAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIV-KDNVVLCS 111 (416)
T ss_dssp CCEECCCCCTTTTSCSCC-CHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCC-GGGEEEES
T ss_pred CeEEecCcCCCcccCCCC-CHHHHHHHHHHhhCCccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCC-cceEEEeC
Confidence 678888776543 12356 899999999998763211111 11223344455555411 00 11 36899999
Q ss_pred ChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCccc
Q 005009 469 NGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFL 548 (719)
Q Consensus 469 SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~ 548 (719)
+|++|++.+++... .. ..+|+....+|||....+ ...|..
T Consensus 112 g~~~al~~~~~~l~-----~~----------------gd~vl~~~p~y~~~~~~~-~~~g~~------------------ 151 (416)
T 1bw0_A 112 GGSHGILMAITAIC-----DA----------------GDYALVPQPGFPHYETVC-KAYGIG------------------ 151 (416)
T ss_dssp HHHHHHHHHHHHHC-----CT----------------TCEEEEEESCCTHHHHHH-HHTTCE------------------
T ss_pred ChHHHHHHHHHHhC-----CC----------------CCEEEEcCCCcHhHHHHH-HHcCcE------------------
Confidence 99999999999871 11 247999999999854322 222110
Q ss_pred CCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccc
Q 005009 549 DPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPV 628 (719)
Q Consensus 549 ~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPV 628 (719)
...++..... .|. -| .+.+++.+. ....+.++++|
T Consensus 152 ----------~~~v~~~~~~----------~~~---------~d--------~~~l~~~l~-------~~~~~v~i~~p- 186 (416)
T 1bw0_A 152 ----------MHFYNCRPEN----------DWE---------AD--------LDEIRRLKD-------DKTKLLIVTNP- 186 (416)
T ss_dssp ----------EEEEEEEGGG----------TTE---------EC--------HHHHHHHCC-------TTEEEEEEESS-
T ss_pred ----------EEEeecCccc----------CCC---------CC--------HHHHHHHhc-------cCCeEEEEeCC-
Confidence 0011110000 000 01 245666664 22345666777
Q ss_pred cccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc-----cccccccCCCcc-e--eeehhccC-CCccchh
Q 005009 629 VHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-----ETTADLLGCVPD-I--ACYGKLLT-GGVIPLA 699 (719)
Q Consensus 629 iqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~-----~~a~e~~gv~PD-I--vtlgK~Lg-gG~~Pls 699 (719)
+...|.+ .|++++++|.++|++||+++|+||++++|.+.|. +.....++..++ + .+++|.++ .| +++|
T Consensus 187 -~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-lr~G 263 (416)
T 1bw0_A 187 -SNPCGSN-FSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPG-WRLG 263 (416)
T ss_dssp -CTTTCCC-CCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGG-GCCE
T ss_pred -CCCCCcc-cCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecchhhCCCCC-ceEE
Confidence 5666765 5789999999999999999999999999877775 222222222222 3 37899975 57 7999
Q ss_pred eeEeCHH
Q 005009 700 ATLATNA 706 (719)
Q Consensus 700 avl~~~~ 706 (719)
+++++++
T Consensus 264 ~~~~~~~ 270 (416)
T 1bw0_A 264 WLLYVDP 270 (416)
T ss_dssp EEEEECT
T ss_pred EEEeeCc
Confidence 9998763
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.8e-11 Score=132.89 Aligned_cols=189 Identities=15% Similarity=0.051 Sum_probs=127.1
Q ss_pred cCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhcccc
Q 005009 411 QGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHE 490 (719)
Q Consensus 411 ~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G 490 (719)
..++|. +|+.++++.. ....+.. ....++...++.++|+++.+. +.++|++||++|++.|++.+. +.
T Consensus 28 ~~~~~~-~~~~~~~~~~--~~~~~~y-~~~~~~~~~~l~~~la~~~g~---~~~~~~~~gt~a~~~al~~l~-----~~- 94 (412)
T 2cb1_A 28 AAYGFK-TLEEGQERFA--TGEGYVY-ARQKDPTAKALEERLKALEGA---LEAVVLASGQAATFAALLALL-----RP- 94 (412)
T ss_dssp SBCCCS-SHHHHHHHHH--HCCSCSB-TTTCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHTTC-----CT-
T ss_pred ceeecC-ChHHHHHHhc--cccCcCc-CCCCChHHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHHh-----CC-
Confidence 367888 8877766554 2222321 223567889999999999873 589999999999999999761 11
Q ss_pred ccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhh
Q 005009 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYS 570 (719)
Q Consensus 491 ~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~ 570 (719)
..+||+....||+.......+... . |.....+|
T Consensus 95 ---------------gd~vi~~~~~~~~~~~~~~~~~~~---~------------------------g~~~~~~~----- 127 (412)
T 2cb1_A 95 ---------------GDEVVAAKGLFGQTIGLFGQVLSL---M------------------------GVTVRYVD----- 127 (412)
T ss_dssp ---------------TCEEEEETTCCHHHHHHHHHTTTT---T------------------------TCEEEEEC-----
T ss_pred ---------------CCEEEEeCCCchhHHHHHHHHHHH---c------------------------CCEEEEEC-----
Confidence 247888888887632211110000 0 00000111
Q ss_pred cccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHH
Q 005009 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650 (719)
Q Consensus 571 ~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc 650 (719)
. + .+.+++.+. .++.+|++|++ ++..|.+.+ +++|.++|
T Consensus 128 ------------~--------~--------~~~l~~~i~--------~~~~~v~~~~~-~n~~G~~~~----l~~i~~l~ 166 (412)
T 2cb1_A 128 ------------P--------E--------PEAVREALS--------AKTRAVFVETV-ANPALLVPD----LEALATLA 166 (412)
T ss_dssp ------------S--------S--------HHHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHH
T ss_pred ------------C--------C--------HHHHHHHhc--------cCCeEEEEeCC-CCCCccccc----HHHHHHHH
Confidence 0 0 245666664 26789999997 898998886 99999999
Q ss_pred HhcCCcEEEeccccCccccCccccccccCCCcceee--ehhccCCCccchheeEeCH
Q 005009 651 QNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLATN 705 (719)
Q Consensus 651 ~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvt--lgK~LggG~~Plsavl~~~ 705 (719)
++||+++|+||+|++++... ...+..+|+++ ++|.++++..++|++++.+
T Consensus 167 ~~~~~~li~D~~~~~~~~~~-----~~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~ 218 (412)
T 2cb1_A 167 EEAGVALVVDNTFGAAGALC-----RPLAWGAHVVVESLTKWASGHGSVLGGAVLSR 218 (412)
T ss_dssp HHHTCEEEEECGGGTTTTSC-----CGGGGTCSEEEEETTTTTTCSSCCCCEEEEEC
T ss_pred HHcCCEEEEECCCccccccC-----CccccCCeEEEECCcccccCCCCcEEEEEEec
Confidence 99999999999998663222 22234689986 9999987436888887655
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.1e-11 Score=132.91 Aligned_cols=193 Identities=12% Similarity=0.021 Sum_probs=130.6
Q ss_pred cCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhcccc
Q 005009 411 QGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHE 490 (719)
Q Consensus 411 ~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G 490 (719)
..+.+. +++...++..+. ...+. ...+.++...+|.++|+++.+. +.+++++||++|++.+++.+. +.
T Consensus 30 ~~~~~~-~~~~~~~~~~~~-~~~~~-y~~~~~~~~~~l~~~la~~~g~---~~~i~~~sG~~ai~~~~~~~~-----~~- 97 (389)
T 3acz_A 30 STFCFD-STQQGADLFMGK-GEGHI-YSRLGNPTVEQFEEMVCSIEGA---AGSAAFGSGMGAISSSTLAFL-----QK- 97 (389)
T ss_dssp SBBCCS-SHHHHHHHHTTC-SSCCC-BTTTCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHTTTC-----CT-
T ss_pred CceecC-ChHHHHHhhcCC-CCCcc-cCCCCChHHHHHHHHHHHHhCC---CeEEEeCCHHHHHHHHHHHHh-----CC-
Confidence 356677 665555443332 11222 2234578889999999999874 578889999999999998761 11
Q ss_pred ccccccCCCccccCcceEEEEEeCCcccCcccc---ccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcch
Q 005009 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGA---MEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEW 567 (719)
Q Consensus 491 ~~~~~~~~~~~~~~~r~kII~~~~syHG~t~ga---lslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~ 567 (719)
..+||+.+..|||..... +...|. ....+|
T Consensus 98 ---------------gd~vl~~~~~y~~~~~~~~~~~~~~g~------------------------------~~~~v~-- 130 (389)
T 3acz_A 98 ---------------GDHLIAGDTLYGCTVSLFTHWLPRFGI------------------------------EVDLID-- 130 (389)
T ss_dssp ---------------TCEEEEESSCCHHHHHHHHHHHHHTTC------------------------------EEEEEC--
T ss_pred ---------------CCEEEEeCCCchHHHHHHHHHHHHcCC------------------------------EEEEEC--
Confidence 247999999998843221 111110 000111
Q ss_pred hhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHH
Q 005009 568 LYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILV 647 (719)
Q Consensus 568 ~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr 647 (719)
..| .+.+++.+. .++++|++|+. ++..|.+.+ +++|.
T Consensus 131 ------------~~d------------------~~~l~~~i~--------~~~~~v~~~~~-~nptG~~~~----l~~i~ 167 (389)
T 3acz_A 131 ------------TSD------------------VEKVKAAWK--------PNTKMVYLESP-ANPTCKVSD----IKGIA 167 (389)
T ss_dssp ------------TTC------------------HHHHHHTCC--------TTEEEEEEESS-CTTTCCCCC----HHHHH
T ss_pred ------------CCC------------------HHHHHHhcC--------CCCeEEEEECC-CCCCCeecC----HHHHH
Confidence 111 244555553 36789999997 898998886 99999
Q ss_pred HHHHhcCCcEEEeccccCccccCccccccccCCCccee--eehhccCCCccch-heeEeCH-HHHhhh
Q 005009 648 KECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPL-AATLATN-AVFDSF 711 (719)
Q Consensus 648 ~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlgK~LggG~~Pl-savl~~~-~i~~~~ 711 (719)
++|++||+++|+||+++++ ..+.. ++..+|++ +++|.++|+..++ |++++++ ++++.+
T Consensus 168 ~~~~~~~~~livD~~~~~~-~~~~~-----~~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l 229 (389)
T 3acz_A 168 VVCHERGARLVVDATFTSP-CFLKP-----LELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATI 229 (389)
T ss_dssp HHHHHHTCEEEEECTTTCT-TTCCG-----GGTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHH
T ss_pred HHHHHcCCEEEEECCCccc-cccCc-----cccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHH
Confidence 9999999999999999854 22222 23468998 6899999755787 8899998 887655
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=6.7e-11 Score=129.70 Aligned_cols=224 Identities=11% Similarity=0.014 Sum_probs=141.9
Q ss_pred eeeeccccccccCCCCCCC--HHHHHHHHHhhhhcc-ccc-CCCCCChHHHHHHHHHHhccCCC-CCC--eEEEeCChHH
Q 005009 400 QQFDACASWWTQGPDATLQ--IELARDMGYTAARFG-HVM-FPENVYEPALECAELLLQGVGKG-WAS--RAYFSDNGST 472 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~h--P~V~~Av~~q~~~~~-~~~-~~~~~~~~~~~Lae~L~~~~~~~-~~~--rv~f~~SGsE 472 (719)
.+||+..|++..+-|+. + |.|.+|+.++++... +.. ......+....+++.+....+.. .-+ .++++++|++
T Consensus 50 ~~i~l~~G~y~d~~~~~-~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~ 128 (420)
T 4f4e_A 50 TKVNLGVGVYTNEDGKI-PLLRAVRDAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTG 128 (420)
T ss_dssp SCEECCCCSCCCTTSCC-CCCHHHHHHHHHHHHTCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHH
T ss_pred CcEEeeeeeeECCCCCc-cCcHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEECCccHH
Confidence 68999999877788887 6 899999999887622 111 11122344555555554422100 024 7999999999
Q ss_pred HHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCc
Q 005009 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (719)
Q Consensus 473 A~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (719)
|++.++++. .... . ..+|+..+.+|++....... .|..
T Consensus 129 al~~~~~~~-~~~~--~----------------gd~Vlv~~p~~~~~~~~~~~-~g~~---------------------- 166 (420)
T 4f4e_A 129 ALKIGADFL-RTLN--P----------------KAKVAISDPSWENHRALFDM-AGFE---------------------- 166 (420)
T ss_dssp HHHHHHHHH-HHHC--T----------------TCCEEEEESCCHHHHHHHHH-TTCC----------------------
T ss_pred HHHHHHHHH-HHhC--C----------------CCEEEEeCCCcHhHHHHHHH-cCCe----------------------
Confidence 999999876 2221 1 23789999999885433222 1110
Q ss_pred ccccCcceeecC--cchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc
Q 005009 553 VFMYNSKWILSL--PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630 (719)
Q Consensus 553 ~~~~~~~~~~~~--P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViq 630 (719)
...++. ++.+ .-| .+.+++.+.+ .+.+..++++... +
T Consensus 167 ------~~~v~~~~~~~~---------------------~~d--------~~~l~~~l~~-----~~~~~~~v~i~~p-~ 205 (420)
T 4f4e_A 167 ------VVAYPYYDAKTN---------------------GVN--------FDGMLAALNG-----YEPGTIVVLHACC-H 205 (420)
T ss_dssp ------EEEEECEETTTT---------------------EEC--------HHHHHHHHTT-----CCTTCEEEEECSS-C
T ss_pred ------EEEeeeeccccC---------------------ccC--------HHHHHHHHHh-----CCCCCEEEEeCCC-C
Confidence 011111 0000 001 3567777763 2346678888776 7
Q ss_pred cCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc--ccccccc-CCCccee---eehhccC-CCccchheeEe
Q 005009 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETTADLL-GCVPDIA---CYGKLLT-GGVIPLAATLA 703 (719)
Q Consensus 631 g~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~--~~a~e~~-gv~PDIv---tlgK~Lg-gG~~Plsavl~ 703 (719)
...|.+. +.+.+++|.++|++||+++|+||++.+|+..|. ......+ +..++++ +++|.+| .| +++|++++
T Consensus 206 NPtG~~~-~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~ 283 (420)
T 4f4e_A 206 NPTGVDL-NDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSFSLYG-ERVGALSI 283 (420)
T ss_dssp TTTCCCC-CHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGG-GCEEEEEE
T ss_pred CCCCCCC-CHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccCcCcC-CCcEEEEE
Confidence 8888755 788899999999999999999999999977652 2222222 2233332 6899999 68 69998753
Q ss_pred ---CHHHHh
Q 005009 704 ---TNAVFD 709 (719)
Q Consensus 704 ---~~~i~~ 709 (719)
++++++
T Consensus 284 ~~~~~~~~~ 292 (420)
T 4f4e_A 284 ITDSKDEAA 292 (420)
T ss_dssp ECSSHHHHH
T ss_pred EcCCHHHHH
Confidence 555543
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.26 E-value=5e-11 Score=126.86 Aligned_cols=213 Identities=8% Similarity=-0.029 Sum_probs=130.5
Q ss_pred eEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEE
Q 005009 387 FSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYF 466 (719)
Q Consensus 387 ~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f 466 (719)
.+++|.+|+ ++|||.++. ..++ . +|++.+|+.+++...... ......+|.++|++..+-. .+.++|
T Consensus 7 ~~~~~~~g~----~~id~~~~~--~~~~-~-~~~v~~a~~~~~~~~~~y-----~~~~~~~lr~~la~~~~~~-~~~i~~ 72 (350)
T 3fkd_A 7 DEGITPLSS----EIVNFSTTV--WTDG-D-KDHLEKHLVENLNCIRHY-----PEPDAGTLRQMLAKRNSVD-NNAILV 72 (350)
T ss_dssp -------------CCEECSCCS--CCCS-C-CHHHHHHHHHTGGGGGSC-----CCTTCHHHHHHHHHHTTCC-GGGEEE
T ss_pred chHhhhccc----cEEEccCCC--CCCC-C-CHHHHHHHHHhHhHHhcC-----CCCcHHHHHHHHHHHhCcC-HHHEEE
Confidence 368999999 999999865 3455 5 899999999988543221 2222257888888877632 368999
Q ss_pred eCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCc
Q 005009 467 SDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGL 546 (719)
Q Consensus 467 ~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~ 546 (719)
+++|++|++.+++.. . | .+||....+|++....+.. .|.
T Consensus 73 t~g~~~al~~~~~~l-~------g----------------d~Vi~~~p~~~~~~~~~~~-~g~----------------- 111 (350)
T 3fkd_A 73 TNGPTAAFYQIAQAF-R------G----------------SRSLIAIPSFAEYEDACRM-YEH----------------- 111 (350)
T ss_dssp ESHHHHHHHHHHHHT-T------T----------------CEEEEEESCCHHHHHHHHH-TTC-----------------
T ss_pred cCCHHHHHHHHHHHH-C------C----------------CEEEEeCCCcHHHHHHHHH-cCC-----------------
Confidence 999999999999987 2 2 3789999999885432221 111
Q ss_pred ccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEc
Q 005009 547 FLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIE 626 (719)
Q Consensus 547 ~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvE 626 (719)
..+.+| ..+.++ . +. ..++.+|+++
T Consensus 112 -------------~~~~v~--------------~~~~~~---------~------------~~-------~~~~~~v~i~ 136 (350)
T 3fkd_A 112 -------------EVCFYP--------------SNEDIG---------E------------AD-------FSNMDFCWLC 136 (350)
T ss_dssp -------------EEEEEE--------------TTSCGG---------G------------SC-------CTTCSEEEEE
T ss_pred -------------eEEEEe--------------cCCccc---------c------------Cc-------cCCCCEEEEe
Confidence 001111 000000 0 00 1234455565
Q ss_pred cccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccc--ccccCCCcceeeehhccC-CCccchheeEe
Q 005009 627 PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT--ADLLGCVPDIACYGKLLT-GGVIPLAATLA 703 (719)
Q Consensus 627 PViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a--~e~~gv~PDIvtlgK~Lg-gG~~Plsavl~ 703 (719)
.. +...|.+.+ .+.+++|.++|++ .++|+||++++|+..|.... .+.++....+.+++|.+| .| +.+|++++
T Consensus 137 ~p-~nptG~~~~-~~~l~~l~~~~~~--~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G-~r~G~~~~ 211 (350)
T 3fkd_A 137 NP-NNPDGRLLQ-RTEILRLLNDHPD--TTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYGIPG-LRIGYIVA 211 (350)
T ss_dssp SS-CTTTCCCCC-HHHHHHHHHHCTT--SEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHHSCGG-GCCEEEEC
T ss_pred CC-CCCcCCCCC-HHHHHHHHHhCCC--CEEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhccCcc-hheEeEEe
Confidence 54 777788776 3334444444444 49999999999988776432 222222334447999998 78 79999999
Q ss_pred CHHHHhhhcCC
Q 005009 704 TNAVFDSFVGD 714 (719)
Q Consensus 704 ~~~i~~~~~~~ 714 (719)
++++.+.+...
T Consensus 212 ~~~~~~~~~~~ 222 (350)
T 3fkd_A 212 NKDFMKRVAAF 222 (350)
T ss_dssp CHHHHHHHHTT
T ss_pred CHHHHHHHHHh
Confidence 99999887653
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=6.1e-11 Score=126.74 Aligned_cols=204 Identities=12% Similarity=0.026 Sum_probs=134.9
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhc-ccccCCCC-----CChHHHHHHHHHHhccCCCCCCeEEEeCChHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARF-GHVMFPEN-----VYEPALECAELLLQGVGKGWASRAYFSDNGSTA 473 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~-~~~~~~~~-----~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA 473 (719)
.|||+.+ .|+. +|+|.+|+.++++.. ..... .+ ..+...++.+.|++.++.. .+.++|+++|++|
T Consensus 3 ~yld~~~------~~~~-~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~t~a 73 (384)
T 1eg5_A 3 VYFDNNA------TTRV-DDRVLEEMIVFYREKYGNPNS-AHGMGIEANLHMEKAREKVAKVLGVS-PSEIFFTSCATES 73 (384)
T ss_dssp EECBTTT------CCCC-CHHHHHHHHHHHHTCCCCTTC-SSHHHHHHHHHHHHHHHHHHHHHTSC-GGGEEEESCHHHH
T ss_pred EEEecCc------cCCC-CHHHHHHHHHHHHhcCCCCcc-ccHHHHHHHHHHHHHHHHHHHHcCCC-CCeEEEECCHHHH
Confidence 5788665 3688 999999999998762 11100 00 1234578889999888743 3589999999999
Q ss_pred HHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccc--cccCCCCCCCCCCCCCccCCCcccCCC
Q 005009 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAM--EAQAPSPYTGFLQQPWYSGRGLFLDPP 551 (719)
Q Consensus 474 ~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~gal--slt~~~~~~~~~~~~~~~~~~~~~~~p 551 (719)
++.+++.+ ..+.... ..+|+....+||+...... ...|..
T Consensus 74 ~~~~~~~~-~~~~~~~----------------gd~vl~~~~~~~~~~~~~~~~~~~g~~--------------------- 115 (384)
T 1eg5_A 74 INWILKTV-AETFEKR----------------KRTIITTPIEHKAVLETMKYLSMKGFK--------------------- 115 (384)
T ss_dssp HHHHHHHH-HHHTTTT----------------CCEEEECTTSCHHHHHHHHHHHHTTCE---------------------
T ss_pred HHHHHHhh-hhhccCC----------------CCEEEECCCCchHHHHHHHHHHhcCCE---------------------
Confidence 99999988 3221111 2478899999988543332 111110
Q ss_pred cccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccccc
Q 005009 552 TVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHA 631 (719)
Q Consensus 552 ~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg 631 (719)
...++....+ ..| .+.+++.+. .++.+|++++. +.
T Consensus 116 -------~~~v~~~~~~-----------~~d------------------~~~l~~~i~--------~~~~~v~~~~~-~n 150 (384)
T 1eg5_A 116 -------VKYVPVDSRG-----------VVK------------------LEELEKLVD--------EDTFLVSIMAA-NN 150 (384)
T ss_dssp -------EEECCBCTTS-----------CBC------------------HHHHHHHCC--------TTEEEEEEESB-CT
T ss_pred -------EEEEccCCCC-----------ccC------------------HHHHHHHhC--------CCCeEEEEECC-CC
Confidence 0011111000 011 245666663 26788999987 88
Q ss_pred CCccccCCHHHHHHHHHHHHhcC--CcEEEeccccCccccCccccccccCCCcceeeeh--hccCC-CccchheeEeCHH
Q 005009 632 AGGMHMVDPLFQRILVKECQNRK--IPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTG-GVIPLAATLATNA 706 (719)
Q Consensus 632 ~gG~~~pp~~fl~~Lr~Lc~k~g--ilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~Lgg-G~~Plsavl~~~~ 706 (719)
..|.+.+ +++|.++|++|| +++|+||+++ ||... +..+. ..+|+++++ |.+|- | +|+++++++
T Consensus 151 ptG~~~~----~~~i~~l~~~~~~~~~li~Dea~~-~~~~~--~~~~~--~~~di~~~s~sK~~g~~G---~G~~~~~~~ 218 (384)
T 1eg5_A 151 EVGTIQP----VEDVTRIVKKKNKETLVHVDAVQT-IGKIP--FSLEK--LEVDYASFSAHKFHGPKG---VGITYIRKG 218 (384)
T ss_dssp TTCBBCC----HHHHHHHHHHHCTTCEEEEECTTT-TTTSC--CCCTT--TCCSEEEEEGGGGTSCTT---CEEEEECTT
T ss_pred CcccccC----HHHHHHHHHhcCCceEEEEEhhhh-cCCcc--cCchh--cCCCEEEecHHHhcCCCc---eEEEEEcCC
Confidence 8898887 899999999999 9999999996 76532 22222 358999877 97553 3 688999987
Q ss_pred H
Q 005009 707 V 707 (719)
Q Consensus 707 i 707 (719)
+
T Consensus 219 ~ 219 (384)
T 1eg5_A 219 V 219 (384)
T ss_dssp S
T ss_pred C
Confidence 6
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.25 E-value=4.6e-11 Score=129.53 Aligned_cols=169 Identities=12% Similarity=0.066 Sum_probs=116.3
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
+.++...+|.++|+++.+. +..++++||+||++.|++.+. +. ..+|+.....||+.
T Consensus 49 ~~~~~~~~l~~~la~~~~~---~~~i~~~sGt~a~~~~~~~~~-----~~----------------g~~vl~~~~~~~~~ 104 (386)
T 1cs1_A 49 RGNPTRDVVQRALAELEGG---AGAVLTNTGMSAIHLVTTVFL-----KP----------------GDLLVAPHDCYGGS 104 (386)
T ss_dssp TCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHC-----CT----------------TCEEEEETTCCHHH
T ss_pred CCCccHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHHh-----CC----------------CCEEEEecCCcHhH
Confidence 4567788999999999874 356667999999999999771 11 24789999999873
Q ss_pred cccccc-ccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHH
Q 005009 520 TLGAME-AQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (719)
Q Consensus 520 t~gals-lt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~ 598 (719)
...+. +... .+ .....+| .+|
T Consensus 105 -~~~~~~~~~~---~g------------------------~~~~~~~--------------~~d---------------- 126 (386)
T 1cs1_A 105 -YRLFDSLAKR---GC------------------------YRVLFVD--------------QGD---------------- 126 (386)
T ss_dssp -HHHHHHHHTT---TS------------------------CEEEEEC--------------TTC----------------
T ss_pred -HHHHHHHHHh---cC------------------------CEEEEeC--------------CCC----------------
Confidence 22211 1000 00 0001111 111
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccccccc
Q 005009 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (719)
Q Consensus 599 ~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~ 678 (719)
.+.+++.+.+ ++++|++|++ ++..|.+.+ +++|.++|++||+++|+||+|+++... ..+ .+
T Consensus 127 --~~~l~~~i~~--------~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~-~~~---~~ 187 (386)
T 1cs1_A 127 --EQALRAALAE--------KPKLVLVESP-SNPLLRVVD----IAKICHLAREVGAVSVVDNTFLSPALQ-NPL---AL 187 (386)
T ss_dssp --HHHHHHHHHT--------CCSEEEEECS-CTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTCTTTC-CGG---GG
T ss_pred --HHHHHHhhcc--------CCcEEEEeCC-CCCCCcccC----HHHHHHHHHHcCCEEEEECCCcccccC-Ccc---cc
Confidence 2556777752 5679999997 999999886 999999999999999999999977543 211 23
Q ss_pred CCCccee--eehhccCCCccch-heeEeCH-HHHhhh
Q 005009 679 GCVPDIA--CYGKLLTGGVIPL-AATLATN-AVFDSF 711 (719)
Q Consensus 679 gv~PDIv--tlgK~LggG~~Pl-savl~~~-~i~~~~ 711 (719)
.+|++ +++|.++++..++ |++++++ ++++.+
T Consensus 188 --~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l 222 (386)
T 1cs1_A 188 --GADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTEL 222 (386)
T ss_dssp --TCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHH
T ss_pred --CceEEEEcCcccccCCCCceeEEEEeCcHHHHHHH
Confidence 45665 7999998764555 8888886 777665
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.1e-10 Score=126.06 Aligned_cols=224 Identities=10% Similarity=0.043 Sum_probs=138.0
Q ss_pred eeeeccccccccCCCCCCC--HHHHHHHHH-hhhhcccccC-C-CCCChHHHHHHHHHHhccCCC-CCC--eEEEeCChH
Q 005009 400 QQFDACASWWTQGPDATLQ--IELARDMGY-TAARFGHVMF-P-ENVYEPALECAELLLQGVGKG-WAS--RAYFSDNGS 471 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~h--P~V~~Av~~-q~~~~~~~~~-~-~~~~~~~~~Lae~L~~~~~~~-~~~--rv~f~~SGs 471 (719)
.+||+..|++..+-|+. + |+|.+|+.+ +++....... . ....+...++++.+....+.. .-+ .++++++|+
T Consensus 27 ~~i~l~~g~y~d~~~~~-~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~ 105 (397)
T 3fsl_A 27 DKVNLSIGLYYNEDGII-PQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGS 105 (397)
T ss_dssp CCEECSSCCCCCTTSCC-CCCHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHH
T ss_pred CeEEEeeeEEECCCCCc-cCcHHHHHHHHhhccCccccccCCCCCchHHHHHHHHHHHhcCCcccccccceEEEEcCCcH
Confidence 68899988766677777 6 999999999 8775322111 1 122334445555554322100 025 799999999
Q ss_pred HHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCC
Q 005009 472 TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPP 551 (719)
Q Consensus 472 EA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p 551 (719)
+|++.++++. .... . ..+|+....+|++....... .|..
T Consensus 106 ~a~~~~~~~~-~~~~--~----------------gd~vl~~~p~~~~~~~~~~~-~g~~--------------------- 144 (397)
T 3fsl_A 106 GALKVGADFL-KRYF--P----------------ESGVWVSDPTWENHVAIFAG-AGFE--------------------- 144 (397)
T ss_dssp HHHHHHHHHH-HHHC--T----------------TCCEEEESSCCHHHHHHHHH-TTCC---------------------
T ss_pred HHHHHHHHHH-HhcC--C----------------CCeEEEeCCCchhHHHHHHH-cCCc---------------------
Confidence 9999999876 2221 1 23788999999885433222 1110
Q ss_pred cccccCcceeecC--cchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccc
Q 005009 552 TVFMYNSKWILSL--PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVV 629 (719)
Q Consensus 552 ~~~~~~~~~~~~~--P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPVi 629 (719)
...++. ++.+ .-| .+.+++.+.+ ...+..++++...
T Consensus 145 -------~~~~~~~~~~~~---------------------~~d--------~~~l~~~l~~-----~~~~~~~v~~~~p- 182 (397)
T 3fsl_A 145 -------VSTYPWYDEATN---------------------GVR--------FNDLLATLKT-----LQAGSIVLLHPCC- 182 (397)
T ss_dssp -------EEEECCEETTTT---------------------EEC--------HHHHHHHHTT-----CCTTCEEEECSSS-
T ss_pred -------eEEEeeeeccCC---------------------cCc--------HHHHHHHHHh-----CCCCCEEEEeCCC-
Confidence 011111 0000 001 3567777763 2345667777664
Q ss_pred ccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccC--cccccccc-CCC---cceeeehhccC-CCccchheeE
Q 005009 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG--VETTADLL-GCV---PDIACYGKLLT-GGVIPLAATL 702 (719)
Q Consensus 630 qg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG--~~~a~e~~-gv~---PDIvtlgK~Lg-gG~~Plsavl 702 (719)
+...|.+. +.+.+++|.++|++||+++|+||++++|...+ .......+ +.. ..+.+++|.+| .| +++|+++
T Consensus 183 ~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~riG~~~ 260 (397)
T 3fsl_A 183 HNPTGADL-TNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYG-ERVGGLS 260 (397)
T ss_dssp CTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGG-GCCEEEE
T ss_pred CCCCCcCC-CHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccccCcC-CCeeEEE
Confidence 77778654 67789999999999999999999999886653 22222222 222 22347899999 78 6999987
Q ss_pred e---CHHHHh
Q 005009 703 A---TNAVFD 709 (719)
Q Consensus 703 ~---~~~i~~ 709 (719)
+ .+++++
T Consensus 261 ~~~~~~~~~~ 270 (397)
T 3fsl_A 261 VMCEDAEAAG 270 (397)
T ss_dssp EECSSHHHHH
T ss_pred EecCCHHHHH
Confidence 4 455544
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.1e-11 Score=134.14 Aligned_cols=196 Identities=13% Similarity=-0.006 Sum_probs=130.5
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccC
Q 005009 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~ 497 (719)
+|+|.+|+.+++.. +.. ....+...++.++|++..+...-+.++|++||++|++.|++.+.
T Consensus 25 ~~~v~~a~~~~~~~--~~~--~~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~--------------- 85 (411)
T 3nnk_A 25 DPRVLRAMSSQLIG--QYD--PAMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAI--------------- 85 (411)
T ss_dssp CHHHHHHHTSCCCC--TTC--HHHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHC---------------
T ss_pred CHHHHHHhhccccc--ccc--HHHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhc---------------
Confidence 79999998876521 111 01124567888888888765422348899999999999999872
Q ss_pred CCccccCcceEEEEEeCCcccCcccc-ccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccc
Q 005009 498 KDTTEKCIELKVLALKGSYHGDTLGA-MEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHK 576 (719)
Q Consensus 498 ~~~~~~~~r~kII~~~~syHG~t~ga-lslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~ 576 (719)
....+||+...+|||..... +...|.. ...++.+..+
T Consensus 86 ------~~gd~Vl~~~~~~~~~~~~~~~~~~g~~----------------------------~~~v~~~~~~-------- 123 (411)
T 3nnk_A 86 ------RPGDKVLVPVFGRFGHLLCEIARRCRAE----------------------------VHTIEVPWGE-------- 123 (411)
T ss_dssp ------CTTCEEEEEECSHHHHHHHHHHHHTTCE----------------------------EEEEECCTTC--------
T ss_pred ------CCCCEEEEecCCchHHHHHHHHHHcCCe----------------------------EEEEecCCCC--------
Confidence 12348999999999853221 1111100 0112211110
Q ss_pred cccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCc
Q 005009 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656 (719)
Q Consensus 577 ~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gil 656 (719)
..| .+.+++.+.+ .++.+|++++. ++..|.+.+ +++|.++|++||++
T Consensus 124 ---~~d------------------~~~l~~~i~~-------~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~~ 170 (411)
T 3nnk_A 124 ---VFT------------------PDQVEDAVKR-------IRPRLLLTVQG-DTSTTMLQP----LAELGEICRRYDAL 170 (411)
T ss_dssp ---CCC------------------HHHHHHHHHH-------HCCSEEEEESE-ETTTTEECC----CTTHHHHHHHHTCE
T ss_pred ---CCC------------------HHHHHHHHhh-------CCCeEEEEeCC-CCCcceecc----HHHHHHHHHHcCCE
Confidence 001 2567777752 25678999997 899999877 88999999999999
Q ss_pred EEEeccccCccccCccccccccCCCccee--eehhccCCCccchheeEeCHHHHhhhcC
Q 005009 657 VIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 657 LI~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
+|+||+++ +|. ..+..+.++ +|++ +++|.|+|+ .++|++++++++++.+..
T Consensus 171 li~Dea~~-~~~--~~~~~~~~~--~d~~~~s~~K~l~~~-~g~g~~~~~~~~~~~~~~ 223 (411)
T 3nnk_A 171 FYTDATAS-LGG--NPLETDVWG--LDAVSAGMQKCLGGP-SGTSPITLSARMEEAIRR 223 (411)
T ss_dssp EEEECTTT-BTT--BCCCTTTTT--CSEEECCSTTTTCCC-SSEEEEEECHHHHHHHHT
T ss_pred EEEECCcc-cCC--cccchhccC--CcEEEecCccccCCC-CceEEEEECHHHHHHHhh
Confidence 99999986 322 224444444 5655 566999887 589999999999887653
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=9.5e-12 Score=135.10 Aligned_cols=90 Identities=11% Similarity=0.014 Sum_probs=62.4
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEE-ccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccc-cCccccCccccccccC
Q 005009 602 SYISQNLLQNPGLKVSGCIGALII-EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVF-TGFWRLGVETTADLLG 679 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIv-EPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVq-TGfGRtG~~~a~e~~g 679 (719)
+.+++.+.+ .++++|++ +|. .+ ...+ +++|+++|++||++||+||+| +|+.++|.+.....
T Consensus 159 ~~l~~~i~~-------~~~~~v~~~~~~-~~---~~~~----l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~-- 221 (420)
T 3gbx_A 159 DEMAKLAKE-------HKPKMIIGGFSA-YS---GVVD----WAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVP-- 221 (420)
T ss_dssp HHHHHHHHH-------HCCSEEEECCTT-CC---SCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCSTT--
T ss_pred HHHHHHHHh-------cCCeEEEEecCc-cC---CccC----HHHHHHHHHHcCCEEEEECCcchhceecccCCcccc--
Confidence 567777763 13567777 565 43 3333 899999999999999999998 47766676443322
Q ss_pred CCcceee--ehhccCCCccchheeEeCH---HHHhhh
Q 005009 680 CVPDIAC--YGKLLTGGVIPLAATLATN---AVFDSF 711 (719)
Q Consensus 680 v~PDIvt--lgK~LggG~~Plsavl~~~---~i~~~~ 711 (719)
.+||++ ++|+++|. ..|++++++ ++.+.+
T Consensus 222 -~~di~~~s~sK~~~g~--~gg~~~~~~~~~~~~~~~ 255 (420)
T 3gbx_A 222 -HAHVVTTTTHKTLAGP--RGGLILAKGGDEELYKKL 255 (420)
T ss_dssp -TSSEEEEESSGGGCSC--SCEEEEESSCCHHHHHHH
T ss_pred -cCCEEEeecccCCCCC--CceEEEEcCCcHHHHHHh
Confidence 389997 66999742 246677876 666654
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.1e-10 Score=128.23 Aligned_cols=225 Identities=10% Similarity=0.068 Sum_probs=133.7
Q ss_pred CCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhccccc-CCCCC-ChHHHHHHHHHHhcc----CCCCCCeEE
Q 005009 392 DQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM-FPENV-YEPALECAELLLQGV----GKGWASRAY 465 (719)
Q Consensus 392 ~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~-~~~~~-~~~~~~Lae~L~~~~----~~~~~~rv~ 465 (719)
.+|+ .+|||.+| .+.-.. +|.|++|++++++++.... ...+. .....+|.+.|++++ +.. .+.++
T Consensus 53 ~~~~----~~i~l~~~---~~~~~~-~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~~~~-~~~i~ 123 (432)
T 3ei9_A 53 YPDA----QVISLGIG---DTTEPI-PEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIG-DDDVF 123 (432)
T ss_dssp CTTC----CCEECSSC---CCCSCC-CHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHTTTTCC-GGGEE
T ss_pred CCCC----CeEEccCC---CCCCCC-CHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHccCCCC-cceEE
Confidence 3466 88999886 344456 9999999999998654321 11121 122356666666653 322 36899
Q ss_pred EeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCC
Q 005009 466 FSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRG 545 (719)
Q Consensus 466 f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~ 545 (719)
|++++++|+..+..++ +. ...|++.+.+||+....+........+... ..
T Consensus 124 ~t~G~~~al~~l~~l~------~~----------------gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~---~~----- 173 (432)
T 3ei9_A 124 VSDGAKCDISRLQVMF------GS----------------NVTIAVQDPSYPAYVDSSVIMGQTGQFNTD---VQ----- 173 (432)
T ss_dssp EESCHHHHHHHHHHHH------CT----------------TCCEEEEESCCTHHHHHHHHHTCSCCEETT---TT-----
T ss_pred ECCChHHHHHHHHHHc------CC----------------CCEEEEeCCCCHHHHHHHHHcCCccccccc---cc-----
Confidence 9999999998643222 11 247999999999865443322211100000 00
Q ss_pred cccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE
Q 005009 546 LFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII 625 (719)
Q Consensus 546 ~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIv 625 (719)
... ....++.. +. ..+ .. . +++ ..++.+|++
T Consensus 174 ~~~---------~~~~~~~~----------------~~-~~~--~~-----------~----l~~------~~~~~~v~l 204 (432)
T 3ei9_A 174 KYG---------NIEYMRCT----------------PE-NGF--FP-----------D----LST------VGRTDIIFF 204 (432)
T ss_dssp EET---------TCEEEECC----------------GG-GTT--SC-----------C----GGG------CCCCSEEEE
T ss_pred ccC---------ceEEeccC----------------cc-cCC--cC-----------C----hhh------CCCCCEEEE
Confidence 000 00111111 00 000 00 0 111 123445555
Q ss_pred ccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccC----CCcceeeehhccC-CCccchhe
Q 005009 626 EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG----CVPDIACYGKLLT-GGVIPLAA 700 (719)
Q Consensus 626 EPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~g----v~PDIvtlgK~Lg-gG~~Plsa 700 (719)
... +...|.+. +.+.+++|.++|++||+++|+||++++|...+.......+. ....+.+++|.+| .| +++|+
T Consensus 205 ~~p-~NPtG~~~-~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~r~G~ 281 (432)
T 3ei9_A 205 CSP-NNPTGAAA-TREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFTG-VRLGW 281 (432)
T ss_dssp ESS-CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCTTT-TCCEE
T ss_pred eCC-CCCCCCCC-CHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccCCcc-cceEE
Confidence 544 67777654 77889999999999999999999999886655544333322 2233558999998 88 79999
Q ss_pred eEeCHHH
Q 005009 701 TLATNAV 707 (719)
Q Consensus 701 vl~~~~i 707 (719)
+++++++
T Consensus 282 ~~~~~~~ 288 (432)
T 3ei9_A 282 TVIPKKL 288 (432)
T ss_dssp EECCTTC
T ss_pred EEEChHH
Confidence 9999887
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.5e-10 Score=125.94 Aligned_cols=210 Identities=14% Similarity=0.069 Sum_probs=133.8
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhccccc-CCCCC-ChHHHHHHHHHHhcc--C-CCCCCeEEEeCChHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM-FPENV-YEPALECAELLLQGV--G-KGWASRAYFSDNGSTAI 474 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~-~~~~~-~~~~~~Lae~L~~~~--~-~~~~~rv~f~~SGsEA~ 474 (719)
.+||+.+|.. .++ . +|.|.+|+.++++...... ...+. .....+|.+.|++++ + -. .+.++|++++++|+
T Consensus 34 ~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~g~~~-~~~v~~~~G~~~al 108 (400)
T 3asa_A 34 TVINLSIGDT--TQP-L-NASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFYRGFVD-AKEIFISDGAKVDL 108 (400)
T ss_dssp CCEECSSCCC--CCC-C-CHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTSTTSSC-GGGEEEESCHHHHH
T ss_pred ceEeccCCCC--CCC-C-CHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHcCCCC-HHHEEEccChHHHH
Confidence 7888877643 233 5 8999999999987653211 11121 223467888888873 3 11 36899999999999
Q ss_pred HHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCccc
Q 005009 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (719)
Q Consensus 475 E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~ 554 (719)
+.++++. .. ..+|++...+||+.... +...|.. .
T Consensus 109 ~~~~~~~------~~----------------gd~Vl~~~p~y~~~~~~-~~~~g~~---~-------------------- 142 (400)
T 3asa_A 109 FRLLSFF------GP----------------NQTVAIQDPSYPAYLDI-ARLTGAK---E-------------------- 142 (400)
T ss_dssp HHHHHHH------CS----------------SCEEEEEESCCHHHHHH-HHHTTCS---E--------------------
T ss_pred HHHHHHc------CC----------------CCEEEECCCCcHHHHHH-HHHcCCc---c--------------------
Confidence 9866543 11 24799999999985432 2222210 0
Q ss_pred ccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCc
Q 005009 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (719)
Q Consensus 555 ~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG 634 (719)
...++.... +.+ ..+ ++ . ..++.+|+++.. +...|
T Consensus 143 ----~~~~~~~~~-----------------~~~--~~~---------------l~-----~-~~~~~~v~l~~p-~nptG 177 (400)
T 3asa_A 143 ----IIALPCLQE-----------------NAF--FPE---------------FP-----E-DTHIDILCLCSP-NNPTG 177 (400)
T ss_dssp ----EEEEECCGG-----------------GTT--CCC---------------CC-----T-TCCCSEEEEESS-CTTTC
T ss_pred ----eEecccchh-----------------cCc--ccC---------------hh-----h-ccCccEEEEeCC-CCCCC
Confidence 001111100 000 000 01 0 124567777665 77778
Q ss_pred cccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc-ccccccCCCcc----eeeehhccC-CCccchheeEeCHHH
Q 005009 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPD----IACYGKLLT-GGVIPLAATLATNAV 707 (719)
Q Consensus 635 ~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~-~a~e~~gv~PD----IvtlgK~Lg-gG~~Plsavl~~~~i 707 (719)
.+ .|.+.+++|.++|++||+++|+||++++|+..|.. .....++-.+| +.+++|.+| .| +++|++++++++
T Consensus 178 ~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-lriG~~~~~~~~ 254 (400)
T 3asa_A 178 TV-LNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAG-IRLGWTVIPQEL 254 (400)
T ss_dssp CC-CCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTTT-CCCEEEECCTTC
T ss_pred Cc-CCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCCcc-hheeEEeeChhh
Confidence 76 47899999999999999999999999999877752 22322322244 558999998 88 799999999887
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.1e-11 Score=132.25 Aligned_cols=214 Identities=13% Similarity=-0.002 Sum_probs=131.8
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccc-cCCCCC-ChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHV-MFPENV-YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIA 477 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~-~~~~~~-~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~A 477 (719)
+|+|..+ .|.+||++.||.+.++++++++.+... ....+. .+...+|.++|+++.+. +..+|++||++|++.|
T Consensus 4 ~~~~~~~--~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~---~~~i~~~~G~~a~~~a 78 (357)
T 3lws_A 4 RLRTSFQ--QTTGQISGHGKRNVGVLKTAFAAVADEMASDQYGTGAIIEPFEQKFADVLGM---DDAVFFPSGTMAQQVA 78 (357)
T ss_dssp HHHHHHH--TCSEESSBSSCCBHHHHHHHHTTSCTTCBCEETTEETTHHHHHHHHHHHHTC---SEEEEESCHHHHHHHH
T ss_pred hhhhHHH--hhcccccCCCCCCHHHHHHHHHHhhcccCcccccCChHHHHHHHHHHHHhCC---CcEEEecCcHHHHHHH
Confidence 6777332 367889988899999999888764311 111122 35678999999998873 5667789999999999
Q ss_pred HHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccC
Q 005009 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (719)
Q Consensus 478 lKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (719)
++.+. .. +..++|..+..||............ .
T Consensus 79 l~~~~-~~-------------------gd~~~vi~~~~~~~~~~~~~~~~~~---------------------------~ 111 (357)
T 3lws_A 79 LRIWS-DE-------------------TDNRTVAYHPLCHLEIHEQDGLKEL---------------------------H 111 (357)
T ss_dssp HHHHH-HH-------------------HTCCEEEECTTCHHHHSSTTHHHHH---------------------------S
T ss_pred HHHHh-hc-------------------CCCcEEEecccceeeeeccchhhhc---------------------------c
Confidence 98872 11 1122666677777643321100000 0
Q ss_pred cceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC-ccc
Q 005009 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG-GMH 636 (719)
Q Consensus 558 ~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~g-G~~ 636 (719)
+...+++|... .. -| .+.+++. . ++++|++++. ++.. |.
T Consensus 112 g~~~~~v~~~~------------~~--------~d--------~~~l~~~---------~-~~~~v~~~~p-~np~~G~- 151 (357)
T 3lws_A 112 PIETILVGAAD------------RL--------MT--------LDEIKAL---------P-DIACLLLELP-QREIGGV- 151 (357)
T ss_dssp SCEEEECSCTT------------SC--------CC--------HHHHHTC---------C-SCSEEEEESS-BGGGTSB-
T ss_pred CcEEEEecCCC------------CC--------cC--------HHHHhcC---------c-CcceEEEEcc-cccCCce-
Confidence 01111122100 00 01 1333321 2 2678999986 6654 54
Q ss_pred cCCHHHHHHHHHHHHhcCCcEEEecccc-----CccccCccccccccCCCccee--eehhccCCCccchheeEeCHHHHh
Q 005009 637 MVDPLFQRILVKECQNRKIPVIFDEVFT-----GFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFD 709 (719)
Q Consensus 637 ~pp~~fl~~Lr~Lc~k~gilLI~DEVqT-----GfGRtG~~~a~e~~gv~PDIv--tlgK~LggG~~Plsavl~~~~i~~ 709 (719)
+.+.+.+++|.++|++||++||+||++. ++|++...+. + ..|++ +++|+++|. ..|.+++++++++
T Consensus 152 ~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~-~----~~d~~~~s~sK~~~~~--~gg~~~~~~~~~~ 224 (357)
T 3lws_A 152 APAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIA-G----LFDSIYISFYKGLGGI--AGAILAGPAAFCQ 224 (357)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHH-T----TSSEEEEESSSTTCCS--SCEEEEECHHHHH
T ss_pred eCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHH-h----cCCEEEEeccccCCCC--ceEEEEcCHHHHH
Confidence 5679999999999999999999999864 3444443332 1 23544 899999653 1267888888887
Q ss_pred hhc
Q 005009 710 SFV 712 (719)
Q Consensus 710 ~~~ 712 (719)
.+.
T Consensus 225 ~~~ 227 (357)
T 3lws_A 225 TAR 227 (357)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=9.9e-11 Score=127.54 Aligned_cols=190 Identities=10% Similarity=-0.011 Sum_probs=125.4
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccC
Q 005009 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~ 497 (719)
++++.+++..+...........+.++...++.++|+++.+. +.+++++||++|++.|++.+. +.
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~---~~~i~~~sG~~a~~~~l~~~~-----~~-------- 102 (398)
T 2rfv_A 39 FDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERG---EAGLATASGISAITTTLLTLC-----QQ-------- 102 (398)
T ss_dssp CSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHC-----CT--------
T ss_pred cCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHHh-----CC--------
Confidence 56777776643332222222234578889999999999873 578899999999999999872 11
Q ss_pred CCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhccccccc
Q 005009 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKD 577 (719)
Q Consensus 498 ~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~ 577 (719)
..+||..+.+||+.......+... . |...+.+|
T Consensus 103 --------gd~vi~~~~~~~~~~~~~~~~~~~---~------------------------g~~~~~v~------------ 135 (398)
T 2rfv_A 103 --------GDHIVSASAIYGCTHAFLSHSMPK---F------------------------GINVRFVD------------ 135 (398)
T ss_dssp --------TCEEEEESSSCHHHHHHHHTHHHH---T------------------------TCEEEEEC------------
T ss_pred --------CCEEEEcCCCcccHHHHHHHHHHH---c------------------------CCEEEEeC------------
Confidence 247888888888743322111000 0 00001111
Q ss_pred ccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcE
Q 005009 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (719)
Q Consensus 578 ~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilL 657 (719)
.+| .+.+++.+. .++++|++|+. ++..|.+.+ +++|.++|++||+++
T Consensus 136 --~~d------------------~~~l~~~i~--------~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~~l 182 (398)
T 2rfv_A 136 --AAK------------------PEEIRAAMR--------PETKVVYIETP-ANPTLSLVD----IETVAGIAHQQGALL 182 (398)
T ss_dssp --TTS------------------HHHHHHHCC--------TTEEEEEEESS-BTTTTBCCC----HHHHHHHHHHTTCEE
T ss_pred --CCC------------------HHHHHHhcC--------CCCeEEEEECC-CCCCCcccC----HHHHHHHHHHcCCEE
Confidence 111 245666653 36789999997 898898886 999999999999999
Q ss_pred EEeccccCccccCccccccccCCCcce--eeehhccCCCccch-heeEeCHHHHh
Q 005009 658 IFDEVFTGFWRLGVETTADLLGCVPDI--ACYGKLLTGGVIPL-AATLATNAVFD 709 (719)
Q Consensus 658 I~DEVqTGfGRtG~~~a~e~~gv~PDI--vtlgK~LggG~~Pl-savl~~~~i~~ 709 (719)
|+||+++. |..+..+ .++ +|+ .+++|.+++...++ |++++++++++
T Consensus 183 i~De~~~~-~~~~~~~---~~~--~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~ 231 (398)
T 2rfv_A 183 VVDNTFMS-PYCQQPL---QLG--ADIVVHSVTKYINGHGDVIGGIIVGKQEFID 231 (398)
T ss_dssp EEECTTTC-TTTCCGG---GGT--CSEEEEETTTTTTCSSCCCCEEEEECHHHHH
T ss_pred EEECCCcc-cccCCch---hhC--CcEEEEeCcccccCCCCceEEEEEECHHHHH
Confidence 99999963 2333322 234 565 58999998633688 89999998876
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.23 E-value=2.2e-11 Score=129.05 Aligned_cols=209 Identities=14% Similarity=0.027 Sum_probs=132.6
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCC-CCCeEEEeCChHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIAL 478 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~-~~~rv~f~~SGsEA~E~Al 478 (719)
+++|+..| .++ . +|+|.+|+.+++. +.. ..+.++...++.++|+++++.. ..+.++|+++|++|++.++
T Consensus 4 ~~~~~~~g----p~~-~-~~~v~~a~~~~~~---~~~-~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~ 73 (366)
T 1m32_A 4 NYLLLTPG----PLT-T-SRTVKEAMLFDSC---TWD-DDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVL 73 (366)
T ss_dssp -CEECSSS----SCC-C-CHHHHHTTCCCCC---TTS-HHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHH
T ss_pred ccccccCC----CcC-C-CHHHHHHHhhhhc---CCC-HHHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHH
Confidence 46777776 233 6 8999999988642 211 0111255678888888887621 1247999999999999999
Q ss_pred HHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCcccccc-ccCCCCCCCCCCCCCccCCCcccCCCcccccC
Q 005009 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAME-AQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (719)
Q Consensus 479 KlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~gals-lt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (719)
+.+. +. ..+||.....||+.+...+. ..|..
T Consensus 74 ~~~~-----~~----------------gd~vi~~~~~~~~~~~~~~~~~~g~~--------------------------- 105 (366)
T 1m32_A 74 GSAL-----GP----------------QDKVLIVSNGAYGARMVEMAGLMGIA--------------------------- 105 (366)
T ss_dssp HHSC-----CT----------------TCCEEEEESSHHHHHHHHHHHHHTCC---------------------------
T ss_pred HHhc-----CC----------------CCeEEEEeCCCccHHHHHHHHHhCCc---------------------------
Confidence 9871 11 23688888899986432111 11110
Q ss_pred cceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCcccc
Q 005009 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (719)
Q Consensus 558 ~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~ 637 (719)
...++.+... ..| .+.+++.+.+ . .++.+|++... +...|.+.
T Consensus 106 -~~~v~~~~~~-----------~~d------------------~~~l~~~l~~-----~-~~~~~v~~~~~-~nptG~~~ 148 (366)
T 1m32_A 106 -HHAYDCGEVA-----------RPD------------------VQAIDAILNA-----D-PTISHIAMVHS-ETTTGMLN 148 (366)
T ss_dssp -EEEEECCTTS-----------CCC------------------HHHHHHHHHH-----C-TTCCEEEEESE-ETTTTEEC
T ss_pred -eEEEeCCCCC-----------CCC------------------HHHHHHHHhc-----C-CCeEEEEEecc-cCCcceec
Confidence 0111111000 111 2567777763 1 13445555443 55568877
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceee--ehhccCCCccchheeEeCHHHHhhhcC
Q 005009 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 638 pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvt--lgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
+ +++|.++|++||+++|+||+++ +|... +..+. ..+|+++ ++|.++|+ .++|++++++++++.+..
T Consensus 149 ~----l~~i~~l~~~~~~~li~Dea~~-~~~~~--~~~~~--~~~di~~~s~~K~~~~~-~g~G~~~~~~~~~~~~~~ 216 (366)
T 1m32_A 149 P----IDEVGALAHRYGKTYIVDAMSS-FGGIP--MDIAA--LHIDYLISSANKCIQGV-PGFAFVIAREQKLAACKG 216 (366)
T ss_dssp C----HHHHHHHHHHHTCEEEEECTTT-TTTSC--CCTTT--TTCSEEEEESSSTTCCC-SSEEEEEEEHHHHTTCTT
T ss_pred C----HHHHHHHHHHcCCEEEEECCcc-ccCcC--ccccc--cCccEEEecCcccccCC-CceEEEEECHHHHHhhcC
Confidence 6 8999999999999999999996 55543 22222 2479885 68999876 477999999999887653
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.6e-11 Score=132.92 Aligned_cols=171 Identities=15% Similarity=0.042 Sum_probs=120.2
Q ss_pred CCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCccc
Q 005009 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (719)
Q Consensus 439 ~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG 518 (719)
.+.++...+|+++|+++.+ .+.+++++||++|++.|++.+. +. ...||+...+|||
T Consensus 77 r~~~p~~~~l~~~la~~~g---~~~~~~~~sG~~Ai~~al~~l~-----~~----------------Gd~Vi~~~~~y~~ 132 (414)
T 3ndn_A 77 RYGNPTVSVFEERLRLIEG---APAAFATASGMAAVFTSLGALL-----GA----------------GDRLVAARSLFGS 132 (414)
T ss_dssp TTCCHHHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHHTTC-----CT----------------TCEEEEESCCCHH
T ss_pred CCCChHHHHHHHHHHHHHC---CCcEEEECCHHHHHHHHHHHHh-----CC----------------CCEEEEcCCccch
Confidence 4567889999999999887 3689999999999999998661 12 2479999999998
Q ss_pred CccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHH
Q 005009 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (719)
Q Consensus 519 ~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~ 598 (719)
.......... . . |...+.+| .+|
T Consensus 133 ~~~~~~~~~~-----~---------~-------------g~~~~~v~--------------~~d---------------- 155 (414)
T 3ndn_A 133 CFVVCSEILP-----R---------W-------------GVQTVFVD--------------GDD---------------- 155 (414)
T ss_dssp HHHHHHTHHH-----H---------T-------------TCEEEEEC--------------TTC----------------
T ss_pred HHHHHHHHHH-----H---------c-------------CcEEEEeC--------------CCC----------------
Confidence 3221111000 0 0 00011111 112
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccccccc
Q 005009 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (719)
Q Consensus 599 ~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~ 678 (719)
.+.+++.+. .++++|++|+. ++..|.+.+ +++|.++|++||++||+||+++ +|.++....+
T Consensus 156 --~~~l~~ai~--------~~t~~v~le~p-~NptG~~~~----l~~i~~la~~~g~~livDe~~~----~~~~~~~~~~ 216 (414)
T 3ndn_A 156 --LSQWERALS--------VPTQAVFFETP-SNPMQSLVD----IAAVTELAHAAGAKVVLDNVFA----TPLLQQGFPL 216 (414)
T ss_dssp --HHHHHHHTS--------SCCSEEEEESS-CTTTCCCCC----HHHHHHHHHHTTCEEEEECTTT----HHHHCCCGGG
T ss_pred --HHHHHHhcC--------CCCeEEEEECC-CCCCCcccc----HHHHHHHHHHcCCEEEEECCCc----ccccCCchhc
Confidence 255666664 25679999997 999998876 9999999999999999999996 3444433456
Q ss_pred CCCcceeeehhccCC-CccchheeEeCHHHHh
Q 005009 679 GCVPDIACYGKLLTG-GVIPLAATLATNAVFD 709 (719)
Q Consensus 679 gv~PDIvtlgK~Lgg-G~~Plsavl~~~~i~~ 709 (719)
|+...+.+++|.+++ |.+++|+++++++.+.
T Consensus 217 g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~ 248 (414)
T 3ndn_A 217 GVDVVVYSGTKHIDGQGRVLGGAILGDREYID 248 (414)
T ss_dssp TCSEEEEETTTTTTCSSCCCCEEEEECHHHHT
T ss_pred CCCeEeccCCccccCCCCceEEEEEECHHHHH
Confidence 665555568999987 6578899999988765
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=4.3e-11 Score=128.90 Aligned_cols=206 Identities=14% Similarity=0.051 Sum_probs=136.9
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlK 479 (719)
.|||.. ..++. +|++.+|+.+++.. +.. ....+...++.++|++.++.+ .+.++|+++|++|++.+++
T Consensus 10 ~yl~~~------~~~~~-~~~v~~a~~~~~~~--~~~--~~~~~~~~~l~~~la~~~g~~-~~~v~~t~g~t~a~~~~~~ 77 (392)
T 2z9v_A 10 VITLTA------GPVNA-YPEVLRGLGRTVLY--DYD--PAFQLLYEKVVDKAQKAMRLS-NKPVILHGEPVLGLEAAAA 77 (392)
T ss_dssp SEECSS------SCCCC-CHHHHHHTTSCCCC--TTS--HHHHHHHHHHHHHHHHHTTCS-SCCEEESSCTHHHHHHHHH
T ss_pred ceeecC------CCcCC-CHHHHHHHhccccc--ccc--HHHHHHHHHHHHHHHHHhCCC-CCEEEEeCCchHHHHHHHH
Confidence 678754 34678 99999999987764 110 011234678888899888743 3689999999999999999
Q ss_pred HHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCcccccc-ccCCCCCCCCCCCCCccCCCcccCCCcccccCc
Q 005009 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAME-AQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (719)
Q Consensus 480 lA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~gals-lt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 558 (719)
.+. +. ..+|+....+||+.....+. ..|..
T Consensus 78 ~~~-----~~----------------gd~Vl~~~~~~~~~~~~~~~~~~g~~---------------------------- 108 (392)
T 2z9v_A 78 SLI-----SP----------------DDVVLNLASGVYGKGFGYWAKRYSPH---------------------------- 108 (392)
T ss_dssp HHC-----CT----------------TCCEEEEESSHHHHHHHHHHHHHCSC----------------------------
T ss_pred Hhc-----CC----------------CCEEEEecCCcccHHHHHHHHHcCCc----------------------------
Confidence 871 11 24799999999986311111 01100
Q ss_pred ceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccC
Q 005009 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (719)
Q Consensus 559 ~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~p 638 (719)
...++.+... ..| .+.+++.+++ ..++.+|++++. +...|.+.+
T Consensus 109 ~~~v~~~~~~-----------~~d------------------~~~l~~~l~~------~~~~~~v~~~~~-~nptG~~~~ 152 (392)
T 2z9v_A 109 LLEIEVPYNE-----------AID------------------PQAVADMLKA------HPEITVVSVCHH-DTPSGTINP 152 (392)
T ss_dssp EEEEECCTTS-----------CCC------------------HHHHHHHHHH------CTTCCEEEEESE-EGGGTEECC
T ss_pred eEEeeCCCCC-----------CCC------------------HHHHHHHHhc------CCCCcEEEEecc-CCCCceecc
Confidence 0111111000 011 2556777752 124668899987 888898876
Q ss_pred CHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeee--hhccCCCccchheeEeCHHHHhhhc
Q 005009 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 639 p~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtl--gK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
+++|.++|++||+++|+||+++ +|... +..+.+ .+|++++ +|.++|+ .++|++++++++++.+.
T Consensus 153 ----l~~i~~l~~~~~~~li~D~a~~-~g~~~--~~~~~~--~~d~~~~s~sK~~~~~-~g~G~l~~~~~~~~~l~ 218 (392)
T 2z9v_A 153 ----IDAIGALVSAHGAYLIVDAVSS-FGGMK--THPEDC--KADIYVTGPNKCLGAP-PGLTMMGVSERAWAKMK 218 (392)
T ss_dssp ----HHHHHHHHHHTTCEEEEECTTT-BTTBS--CCGGGG--TCSEEEECSSSTTCCC-SCCEEEEECHHHHHHHH
T ss_pred ----HHHHHHHHHHcCCeEEEEcccc-cCCcc--cccccc--cceEEEecCcccccCC-CceeEEEECHHHHHHhh
Confidence 8999999999999999999996 44322 222323 4788865 6999876 46799999999887663
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.21 E-value=6.3e-11 Score=128.83 Aligned_cols=196 Identities=12% Similarity=0.030 Sum_probs=112.6
Q ss_pred CCCCCHHHHHHHHHhhh-hcccccC------CCCCChHHHHHH-HHHHhccCCCCCCeE-EEeCChHHHHHHHHHHHHHH
Q 005009 414 DATLQIELARDMGYTAA-RFGHVMF------PENVYEPALECA-ELLLQGVGKGWASRA-YFSDNGSTAIEIALKMAFRK 484 (719)
Q Consensus 414 GH~~hP~V~~Av~~q~~-~~~~~~~------~~~~~~~~~~La-e~L~~~~~~~~~~rv-~f~~SGsEA~E~AlKlA~r~ 484 (719)
.+. ||+|++|+.+++. .+.+... .....+...+++ +++++..+. +.+ ++++||++|++.|++.+.
T Consensus 42 ~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~v~~~~Gs~a~~~al~~~~-- 115 (425)
T 3ecd_A 42 NIV-SRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNA---GHANVQPHSGAQANGAVMLALA-- 115 (425)
T ss_dssp CCC-CHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTC---SEEECCCSSHHHHHHHHHHHHC--
T ss_pred CCC-CHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCC---CCceeecCchHHHHHHHHHHcc--
Confidence 456 8999999999984 4322210 011123556666 667777763 455 459999999999998771
Q ss_pred hhccccccccccCCCccccCcceEEEEEeCCcccC-cccccc-ccCCCCCCCCCCCCCccCCCcccCCCcccccCcceee
Q 005009 485 FSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD-TLGAME-AQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWIL 562 (719)
Q Consensus 485 ~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~-t~gals-lt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 562 (719)
+. ..+|++...+||+. +.+... ..+.. + ..+
T Consensus 116 ---~~----------------gd~Vi~~~~~~~~~~~~~~~~~~~g~~-~---------------------------~~~ 148 (425)
T 3ecd_A 116 ---KP----------------GDTVLGMSLDAGGHLTHGAKPALSGKW-F---------------------------NAL 148 (425)
T ss_dssp ---CT----------------TCEEEEECC-------------------C---------------------------EEE
T ss_pred ---CC----------------CCEEEEcccccccceecchhhhhcccc-e---------------------------eee
Confidence 11 24789999988882 222211 11100 0 001
Q ss_pred cCc---chhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEc-cccccCCccccC
Q 005009 563 SLP---EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIE-PVVHAAGGMHMV 638 (719)
Q Consensus 563 ~~P---~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvE-PViqg~gG~~~p 638 (719)
++| +.+ ..| .+.+++.+.+ .++++|+++ |. .| .
T Consensus 149 ~~~~~~~~~-----------~~d------------------~~~l~~~i~~-------~~~~~v~~~~~~-~~---~--- 185 (425)
T 3ecd_A 149 QYGVSRDTM-----------LID------------------YDQVEALAQQ-------HKPSLIIAGFSA-YP---R--- 185 (425)
T ss_dssp EECCCTTTS-----------SCC------------------HHHHHHHHHH-------HCCSEEEEECSC-CC---S---
T ss_pred ecCCCcccC-----------ccC------------------HHHHHHHHhh-------cCCcEEEEcccc-CC---C---
Confidence 111 000 001 2556777752 135678887 65 43 2
Q ss_pred CHHHHHHHHHHHHhcCCcEEEeccc-cCccccCccccccccCCCcceee--ehhccCCCccchheeEeC-HHHHhhh
Q 005009 639 DPLFQRILVKECQNRKIPVIFDEVF-TGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLAT-NAVFDSF 711 (719)
Q Consensus 639 p~~fl~~Lr~Lc~k~gilLI~DEVq-TGfGRtG~~~a~e~~gv~PDIvt--lgK~LggG~~Plsavl~~-~~i~~~~ 711 (719)
...+++|+++|++||++||+||+| +|+.+.|.++.... .+|+++ ++|+++|+ .+|+++++ +++.+.+
T Consensus 186 -~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~---~~di~~~s~sK~l~g~--~~g~~~~~~~~~~~~~ 256 (425)
T 3ecd_A 186 -KLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVE---HAHVVTSTTHKTLRGP--RGGFVLTNDEEIAKKI 256 (425)
T ss_dssp -CCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGG---TCSEEEEESSGGGCCC--SCEEEEESCHHHHHHH
T ss_pred -cCCHHHHHHHHHHcCCEEEEECcChHhhhhcccccCchh---cCcEEEecCCcccCCC--CcEEEEeCCHHHHHHH
Confidence 334799999999999999999996 56666666543221 268875 56999654 46778887 5666554
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.21 E-value=8.7e-11 Score=125.56 Aligned_cols=213 Identities=12% Similarity=0.076 Sum_probs=137.3
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlK 479 (719)
.+|||.++.. .++ . +|+|++|+.++++..... ......+|.++|+++.+-. .+.++|+++|++|++.+++
T Consensus 31 ~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~y-----~~~~~~~lr~~la~~~~~~-~~~v~~~~g~~~a~~~~~~ 100 (365)
T 3get_A 31 EVIKLASNEN--PFG-T-PPKAIECLRQNANKAHLY-----PDDSMIELKSTLAQKYKVQ-NENIIIGAGSDQVIEFAIH 100 (365)
T ss_dssp CCEECSSCCC--TTC-S-CHHHHHHHHHHGGGTTSC-----CCTTCHHHHHHHHHHHTCC-GGGEEEESSHHHHHHHHHH
T ss_pred ceEEecCCCC--CCC-C-CHHHHHHHHHHHHhhccC-----CCCChHHHHHHHHHHhCCC-cceEEECCCHHHHHHHHHH
Confidence 7899988643 466 5 899999999998753322 2222257888888877632 3689999999999999998
Q ss_pred HHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcc
Q 005009 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (719)
Q Consensus 480 lA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (719)
... +. ..+|+....+|++....+.. .|.
T Consensus 101 ~l~-----~~----------------gd~vl~~~~~~~~~~~~~~~-~g~------------------------------ 128 (365)
T 3get_A 101 SKL-----NS----------------KNAFLQAGVTFAMYEIYAKQ-CGA------------------------------ 128 (365)
T ss_dssp HHC-----CT----------------TCEEEECSSCCTHHHHHHHH-HTC------------------------------
T ss_pred HHh-----CC----------------CCEEEEeCCChHHHHHHHHH-cCC------------------------------
Confidence 761 11 24788888888764332211 111
Q ss_pred eeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCC
Q 005009 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (719)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (719)
..+.+| ..+ + .. ...+.+++.+. .++.+|+++.. +...|.+. |
T Consensus 129 ~~~~v~--------------~~~---------~--~~--~d~~~l~~~l~--------~~~~~v~~~~p-~nptG~~~-~ 171 (365)
T 3get_A 129 KCYKTQ--------------SIT---------H--NL--DEFKKLYETHK--------DEIKLIFLCLP-NNPLGECL-D 171 (365)
T ss_dssp EEEECS--------------SSS---------C--CH--HHHHHHHHHTT--------TTEEEEEEESS-CTTTCCCC-C
T ss_pred EEEEEe--------------cCC---------C--CC--CCHHHHHHHhC--------CCCCEEEEcCC-CCCCCCCc-C
Confidence 011111 000 0 00 11356666663 35677777654 67677766 5
Q ss_pred HHHHHHHHHHHHhcCCcEEEeccccCcc---ccCccc-cc---cccCCCcceeeehhccC-CCccchheeEeCHHHHhhh
Q 005009 640 PLFQRILVKECQNRKIPVIFDEVFTGFW---RLGVET-TA---DLLGCVPDIACYGKLLT-GGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 640 ~~fl~~Lr~Lc~k~gilLI~DEVqTGfG---RtG~~~-a~---e~~gv~PDIvtlgK~Lg-gG~~Plsavl~~~~i~~~~ 711 (719)
.+.++++.++| ++|+++|+||++++|. ..+... .. +.++....+.+++|.+| .| +++|++++++++.+.+
T Consensus 172 ~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~ 249 (365)
T 3get_A 172 ASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGG-LRIGYGIANANIISAF 249 (365)
T ss_dssp HHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTT-TCCEEEEECHHHHHHH
T ss_pred HHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcc-hheEEEEcCHHHHHHH
Confidence 66677777777 6799999999999775 322222 11 22333344448999998 78 7999999999998877
Q ss_pred cC
Q 005009 712 VG 713 (719)
Q Consensus 712 ~~ 713 (719)
..
T Consensus 250 ~~ 251 (365)
T 3get_A 250 YK 251 (365)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=6.5e-11 Score=129.24 Aligned_cols=170 Identities=12% Similarity=-0.008 Sum_probs=117.5
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
+.++...++.++|+++.+. +.+++++||++|++.|++.+. +. ..+||+.+.+||+.
T Consensus 62 ~~~~~~~~l~~~la~~~g~---~~~i~~~sG~~a~~~~l~~~~-----~~----------------gd~vl~~~~~~~~~ 117 (398)
T 1gc0_A 62 ISNPTLNLLEARMASLEGG---EAGLALASGMGAITSTLWTLL-----RP----------------GDEVLLGNTLYGCT 117 (398)
T ss_dssp -CCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHC-----CT----------------TCEEEEESSCCSHH
T ss_pred CCChHHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHHHHh-----cC----------------CCEEEEeCCCchhH
Confidence 4578888999999999874 588999999999999999871 11 24789999988885
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
......+.... + .....+| ..|
T Consensus 118 ~~~~~~~~~~~---g------------------------~~~~~~~--------------~~d----------------- 139 (398)
T 1gc0_A 118 FAFLHHGIGEF---G------------------------VKLRHVD--------------MAD----------------- 139 (398)
T ss_dssp HHHHHHTGGGG---T------------------------CEEEEEC--------------TTC-----------------
T ss_pred HHHHHHHHHHc---C------------------------CEEEEEC--------------CCC-----------------
Confidence 43321111000 0 0000011 111
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccC
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~g 679 (719)
.+.+++.+. +++++|++|++ ++..|.+.+ +++|.++|++||+++|+||+++.+ ..+..+ .++
T Consensus 140 -~~~l~~~i~--------~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~~-~~~~~~---~~~ 201 (398)
T 1gc0_A 140 -LQALEAAMT--------PATRVIYFESP-ANPNMHMAD----IAGVAKIARKHGATVVVDNTYCTP-YLQRPL---ELG 201 (398)
T ss_dssp -HHHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHGGGTCEEEEECTTTHH-HHCCGG---GGT
T ss_pred -HHHHHHhcC--------CCCeEEEEECC-CCCCccccc----HHHHHHHHHHcCCEEEEECCCccc-ccCCch---hhC
Confidence 245666654 36889999997 888898876 999999999999999999999743 333322 345
Q ss_pred CCcceeeehhccCCCccch-heeEeCHHHHh
Q 005009 680 CVPDIACYGKLLTGGVIPL-AATLATNAVFD 709 (719)
Q Consensus 680 v~PDIvtlgK~LggG~~Pl-savl~~~~i~~ 709 (719)
....+.+++|.++++..++ |++++++++++
T Consensus 202 ~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~ 232 (398)
T 1gc0_A 202 ADLVVHSATKYLSGHGDITAGIVVGSQALVD 232 (398)
T ss_dssp CSEEEEETTTTTTCSSSCCCEEEEECHHHHH
T ss_pred ceEEEECCccccCCCCCCeEEEEEEChHHHH
Confidence 4444558999999754687 88888887654
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=7.3e-11 Score=128.52 Aligned_cols=196 Identities=13% Similarity=0.070 Sum_probs=132.3
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlK 479 (719)
.|||+.++.... .|++.+|+.++++...+. ..+...++.++|+++++. +.++|++||++|++.+++
T Consensus 31 ~~id~~~~~~~~------~~~v~~a~~~~~~~~~y~-----~~~~~~~l~~~la~~~~~---~~~v~~~~Gt~a~~~~l~ 96 (399)
T 2oga_A 31 PFLDLKAAYEEL------RAETDAAIARVLDSGRYL-----LGPELEGFEAEFAAYCET---DHAVGVNSGMDALQLALR 96 (399)
T ss_dssp CSCCHHHHHHHT------HHHHHHHHHHHHHHTCCS-----SSHHHHHHHHHHHHHTTS---SEEEEESCHHHHHHHHHH
T ss_pred cccccCcCCCCC------CHHHHHHHHHHHhcCCCC-----CchhHHHHHHHHHHHHCC---CeEEEecCHHHHHHHHHH
Confidence 799998876642 289999999998763221 246678999999999873 578999999999999998
Q ss_pred HHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcc
Q 005009 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (719)
Q Consensus 480 lA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (719)
.+ + .+. ..+|+....+||+ +..++...|...
T Consensus 97 ~~-~---~~~----------------gd~vl~~~~~~~~-~~~~~~~~g~~~---------------------------- 127 (399)
T 2oga_A 97 GL-G---IGP----------------GDEVIVPSHTYIA-SWLAVSATGATP---------------------------- 127 (399)
T ss_dssp HT-T---CCT----------------TCEEEEESSSCTH-HHHHHHHTTCEE----------------------------
T ss_pred Hh-C---CCC----------------cCEEEECCCccHH-HHHHHHHCCCEE----------------------------
Confidence 76 2 111 2479999999988 333333332110
Q ss_pred eeecCcc-hhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccC
Q 005009 560 WILSLPE-WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (719)
Q Consensus 560 ~~~~~P~-~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~p 638 (719)
..++... .+ ..| .+.+++.+. .++++|+++.. .|.+.+
T Consensus 128 ~~~~~~~~~~-----------~~d------------------~~~l~~~i~--------~~~~~v~~~n~----tG~~~~ 166 (399)
T 2oga_A 128 VPVEPHEDHP-----------TLD------------------PLLVEKAIT--------PRTRALLPVHL----YGHPAD 166 (399)
T ss_dssp EEECBCSSSS-----------SBC------------------HHHHHHHCC--------TTEEEECCBCG----GGCCCC
T ss_pred EEEecCCCCC-----------CcC------------------HHHHHHhcC--------CCCeEEEEeCC----cCCccC
Confidence 0111100 00 011 245666664 25778886654 355554
Q ss_pred CHHHHHHHHHHHHhcCCcEEEeccccCccc--cCccccccccCCCcceeeeh----hccCC-CccchheeEeC-HHHHhh
Q 005009 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWR--LGVETTADLLGCVPDIACYG----KLLTG-GVIPLAATLAT-NAVFDS 710 (719)
Q Consensus 639 p~~fl~~Lr~Lc~k~gilLI~DEVqTGfGR--tG~~~a~e~~gv~PDIvtlg----K~Lgg-G~~Plsavl~~-~~i~~~ 710 (719)
+++|.++|++||+++|+||+++ +|. .|. .++..+|+++++ |.+|+ | +.|+++++ +++++.
T Consensus 167 ----l~~i~~l~~~~~~~li~Dea~~-~g~~~~~~-----~~~~~~di~~~S~~~sK~~~~~G--~~g~~~~~~~~~~~~ 234 (399)
T 2oga_A 167 ----MDALRELADRHGLHIVEDAAQA-HGARYRGR-----RIGAGSSVAAFSFYPGKNLGCFG--DGGAVVTGDPELAER 234 (399)
T ss_dssp ----HHHHHHHHHHHTCEECEECTTC-TTCEETTE-----ETTCTTCEEEEECCTTSSSCCSS--CCEEEEESCHHHHHH
T ss_pred ----HHHHHHHHHHcCCEEEEECccc-ccCccCCe-----ecccccCEEEEeCCCCccCCcCC--ceEEEEeCCHHHHHH
Confidence 8999999999999999999996 332 232 234447999884 99988 7 68888886 787665
Q ss_pred h
Q 005009 711 F 711 (719)
Q Consensus 711 ~ 711 (719)
+
T Consensus 235 l 235 (399)
T 2oga_A 235 L 235 (399)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=99.20 E-value=3.7e-11 Score=129.59 Aligned_cols=141 Identities=15% Similarity=0.132 Sum_probs=106.1
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCCCChHHHHHHhcCCCccccCCCccccccchh
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPHDSDSRFLFTKLPSLSLRRNFPSSLILSNSI 116 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (719)
.+.+||+||++++|||+++..|.++++ ++|++++++++.|+|.....+ .
T Consensus 169 ~~ri~v~GTDt~vGKt~t~~~L~~~l~-----~~G~~v~~v~tgqtg~li~~~-------~------------------- 217 (350)
T 2g0t_A 169 IKVVGVFGTDCVVGKRTTAVQLWERAL-----EKGIKAGFLATGQTGILIGAD-------A------------------- 217 (350)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHH-----HTTCCEEEEECSHHHHHTTCS-------E-------------------
T ss_pred ceEEEEecCCCCccCccHHHHHHHHHH-----hcCCeEEEEccCceeeeeccC-------C-------------------
Confidence 578999999999999999999999995 899999999987774311010 0
Q ss_pred hhhhHHHhhhhccCCCCCCCCccCCcccccccccccccccCCCCCccccccccceeecccCcChHHHHhHhcCCCCCHHH
Q 005009 117 LFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGVVGDSK 196 (719)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~~~ 196 (719)
.+......+++.+.+.+ +
T Consensus 218 ------------------------------------------------------gv~~D~~~~~~~ag~~e-~------- 235 (350)
T 2g0t_A 218 ------------------------------------------------------GYVIDAVPADFVSGVVE-K------- 235 (350)
T ss_dssp ------------------------------------------------------ECCGGGSBGGGHHHHHH-H-------
T ss_pred ------------------------------------------------------CCCCCceecchhhHHHH-h-------
Confidence 11112344567777666 2
Q ss_pred HHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEc-C-----------CC-Ch
Q 005009 197 VIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGD-G-----------RL-GG 263 (719)
Q Consensus 197 v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~-~-----------~~-g~ 263 (719)
+...+. . +++|++||||+||++.|+.. ...+.+.+....+.|++.. . .+ +.
T Consensus 236 ~i~~~~--~-------------~~~D~ivVEGqGgl~~P~~~-~v~~~ll~g~~p~~vIl~h~~~r~~~~~~~~~~~~~~ 299 (350)
T 2g0t_A 236 AVLKLE--K-------------TGKEIVFVEGQGALRHPAYG-QVTLGLLYGSNPDVVFLVHDPSRDHFESFPEIPKKPD 299 (350)
T ss_dssp HHHHHH--H-------------TTCSEEEEECCSCTTCTTTH-HHHHHHHHHHCCSEEEEECCTTCSSCTTCTTSSCCCC
T ss_pred hHHHhh--h-------------cCCCEEEEccCeeccccCch-HHHHHHHcCCCCCEEEEEeCCCCccccCCCcccCCcC
Confidence 222222 2 24999999999999999852 3378899999989888865 1 15 89
Q ss_pred HHHHHHHHHHHHhCCCcEEEEE-Ecc
Q 005009 264 ISGTISAYESLKLRGYDVVAVV-FED 288 (719)
Q Consensus 264 i~~~~~~~~~l~~~~~~v~gvi-~N~ 288 (719)
+++.+.+++.+. +.+|+|++ +|.
T Consensus 300 i~~~i~~ie~l~--~~~V~gi~~lN~ 323 (350)
T 2g0t_A 300 FEEERRLIETLS--NAKVIGGVSLNG 323 (350)
T ss_dssp HHHHHHHHHHSS--SCEEEEEECSSC
T ss_pred HHHHHHHHHHhc--CCcEEEEEEcCc
Confidence 999999999987 88999999 996
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.8e-10 Score=126.56 Aligned_cols=212 Identities=10% Similarity=-0.014 Sum_probs=133.4
Q ss_pred CHHHHHHHHHhhhhc---ccccCCCCCChHHHHHHHHHHhccCCCCCCeEEE---eCChHHHHHHHHHHHHHHhhccccc
Q 005009 418 QIELARDMGYTAARF---GHVMFPENVYEPALECAELLLQGVGKGWASRAYF---SDNGSTAIEIALKMAFRKFSFDHEV 491 (719)
Q Consensus 418 hP~V~~Av~~q~~~~---~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f---~~SGsEA~E~AlKlA~r~~~~~~G~ 491 (719)
+++|.+|++++.... .......+......+++++|++..+. +.... ++||++|++.|++..+ +.
T Consensus 37 ~~~vl~A~~~~~~~~~~~~~~~g~~y~~~~~~~l~~~la~~~g~---~~~~~~i~~~sGt~Ai~~al~al~-----~~-- 106 (431)
T 3ht4_A 37 QFRVLESFGKHKISDSHFIPTTGYGYDDIGRDTLEKVYADVFGA---EAGLVRPQIISGTHAISTALFGIL-----RP-- 106 (431)
T ss_dssp HHHHHHHHHHTTCCGGGSCCCCTTCCSCHHHHHHHHHHHHHTTC---SEECCBTTSCSHHHHHHHHHHTTC-----CT--
T ss_pred HHHHHHHHHHhchhhhhcCCCCCCCCChhhHHHHHHHHHHHhCC---CcccccceeeCHHHHHHHHHHHhC-----CC--
Confidence 889999998864322 22222234456778899999998874 34443 6699999999987551 11
Q ss_pred cccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhc
Q 005009 492 LVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSK 571 (719)
Q Consensus 492 ~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~ 571 (719)
...||+.++..|+.+...+.+++. ++.. + ... |.....+|
T Consensus 107 --------------Gd~Vl~~~~~~y~~~~~~~~l~g~--~~~~----~-~~~-------------G~~~~~v~------ 146 (431)
T 3ht4_A 107 --------------GDELLYITGKPYDTLEEIVGVRGK--GVGS----F-KEY-------------NIGYNAVP------ 146 (431)
T ss_dssp --------------TCEEEECSSSCCTTHHHHTTSSSC--SSSC----S-GGG-------------TCEEEECC------
T ss_pred --------------CCEEEEeCCCCchhHHHHHhhccc--ccch----H-HHc-------------CCEEEEeC------
Confidence 236888887888888877777653 2211 0 000 11111111
Q ss_pred ccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHH
Q 005009 572 IVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQ 651 (719)
Q Consensus 572 ~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~ 651 (719)
++. + + .-| .+.+++.+. .++.+|++|+-.+...|. ..+...+++|.++|+
T Consensus 147 --------~~~-~--~--~~d--------~e~l~~~l~--------~~tk~V~i~~sp~np~~~-~~~~~~l~~i~~la~ 196 (431)
T 3ht4_A 147 --------LTE-G--G--LVD--------FEAVAAAIH--------SNTKMIGIQRSKGYATRP-SFTISQIKEMIAFVK 196 (431)
T ss_dssp --------BCT-T--S--SBC--------HHHHHHHCC--------TTEEEEEEECSCTTSSSC-CCCHHHHHHHHHHHH
T ss_pred --------CCC-C--C--CcC--------HHHHHhhcC--------CCCeEEEEECCCCCCCCC-cCCHHHHHHHHHHHH
Confidence 000 0 0 001 255666664 368899999521323333 346778999999999
Q ss_pred h--cCCcEEEeccccCccccCccccccccCCCcceeeehhccCCCc-cchheeEeCHHHHhhhc
Q 005009 652 N--RKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGV-IPLAATLATNAVFDSFV 712 (719)
Q Consensus 652 k--~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG~-~Plsavl~~~~i~~~~~ 712 (719)
+ ||+++|+||++..+...+.... +|+...+.+++|.||||+ .+.|++++++++.+.+.
T Consensus 197 ~~~~~~~livDea~~~~~~~~~~~~---~g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~l~ 257 (431)
T 3ht4_A 197 EIKPDVVVFVDNCYGEFIEEQEPCH---VGADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEACA 257 (431)
T ss_dssp HHCTTCEEEEECTTCTTSSSCCGGG---TTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHH
T ss_pred hhCCCCEEEEeCCChhhccCCCccc---cCCeEEEcCccccCCCCCCCceEEEEecHHHHHHHH
Confidence 9 9999999999987755444332 243333346999999854 45678888998887763
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=99.19 E-value=2e-10 Score=125.32 Aligned_cols=227 Identities=9% Similarity=0.011 Sum_probs=136.3
Q ss_pred eeeecccccccc-CCCCCCCHHHHHHHHHhhhhc--ccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHH
Q 005009 400 QQFDACASWWTQ-GPDATLQIELARDMGYTAARF--GHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEI 476 (719)
Q Consensus 400 ~yLD~~sg~~~~-~lGH~~hP~V~~Av~~q~~~~--~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~ 476 (719)
.+||+..|.-.. .......+.|.+|+.+..+.. .+.. .....+....+++.+....+....+.++++++|++|++.
T Consensus 39 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~-~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al~~ 117 (418)
T 3rq1_A 39 NVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSEHVGYAP-IAGIPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGIHH 117 (418)
T ss_dssp GCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHHHHSCCC-TTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHH
T ss_pred CeEECCCCcccCCCCCccccHHHHHHHHHhcccccCCCCC-CCChHHHHHHHHHHHhcccCccccccEEECCchHHHHHH
Confidence 556665543211 112222678888887655421 2211 112334455666666554432111289999999999999
Q ss_pred HHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCccccc
Q 005009 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (719)
Q Consensus 477 AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (719)
+++... .. ..+|+....+|++....+.. .|..
T Consensus 118 ~~~~l~-----~~----------------gd~Vl~~~p~~~~~~~~~~~-~g~~-------------------------- 149 (418)
T 3rq1_A 118 LIHNYT-----EP----------------GDEVLTADWYWGAYRVICSD-TGRT-------------------------- 149 (418)
T ss_dssp HHHHHS-----CT----------------TCEEEEESSCCTHHHHHHHH-TTCE--------------------------
T ss_pred HHHHhc-----CC----------------CCEEEECCCCchhHHHHHHH-cCCE--------------------------
Confidence 998661 11 24788888888875443222 2110
Q ss_pred CcceeecC-cchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEc-cccccCCc
Q 005009 557 NSKWILSL-PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIE-PVVHAAGG 634 (719)
Q Consensus 557 ~~~~~~~~-P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvE-PViqg~gG 634 (719)
...++. ++.+ ..| .+.+++.+.+. ..+...++++++ |. +...|
T Consensus 150 --~~~v~~~~~~~-----------~~d------------------~~~l~~~l~~~---~~~~~~~~vi~~~p~-~NPtG 194 (418)
T 3rq1_A 150 --LVTYSLFDEHN-----------NFN------------------HEAFQNRVNEL---AAKQTNVVVIFNTPG-NNPTG 194 (418)
T ss_dssp --EEEECSBCTTS-----------SBC------------------HHHHHHHHHHH---HHHCSEEEEEEECSS-CTTTC
T ss_pred --EEEEeeeCCCC-----------CcC------------------HHHHHHHHHHh---hccCCCEEEEEeCCC-CCCCC
Confidence 001111 0000 001 24455555420 001234456665 74 67778
Q ss_pred cccCCHHHHHHHHHHHH------hcCCcEEEeccccCccccCc---cccccccCCCcce---e--eehhccC-CCccchh
Q 005009 635 MHMVDPLFQRILVKECQ------NRKIPVIFDEVFTGFWRLGV---ETTADLLGCVPDI---A--CYGKLLT-GGVIPLA 699 (719)
Q Consensus 635 ~~~pp~~fl~~Lr~Lc~------k~gilLI~DEVqTGfGRtG~---~~a~e~~gv~PDI---v--tlgK~Lg-gG~~Pls 699 (719)
.+. +.+.+++|.++|+ +||+++|+||++++|++.|. .+.....++.+|+ + +++|.+| .| +++|
T Consensus 195 ~~~-~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G-~r~G 272 (418)
T 3rq1_A 195 YSI-EDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTMYG-QRVG 272 (418)
T ss_dssp CCC-CHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTTCCS-SCCE
T ss_pred CCC-CHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCcC-Ccce
Confidence 765 6677999999999 89999999999999998875 3444455677773 3 7999998 57 7999
Q ss_pred eeEe---CHHHHhhhc
Q 005009 700 ATLA---TNAVFDSFV 712 (719)
Q Consensus 700 avl~---~~~i~~~~~ 712 (719)
++++ ++++++.+.
T Consensus 273 ~~~~~~~~~~~~~~~~ 288 (418)
T 3rq1_A 273 AMIGISDDEEIADEFF 288 (418)
T ss_dssp EEEEEESSHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHH
Confidence 9999 899888764
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=7.1e-11 Score=126.75 Aligned_cols=207 Identities=14% Similarity=0.073 Sum_probs=133.8
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlK 479 (719)
++||+.++. +.+|+. |.+ + +.... .+......+|.++|++..+-+ .+.++++++|+||++.+++
T Consensus 30 ~~i~l~~~~--~~~~~~--~~v--a----~~~~~-----~Y~~~~~~~lr~~la~~~~~~-~~~v~~~~G~~~ai~~~~~ 93 (356)
T 1fg7_A 30 GDVWLNANE--YPTAVE--FQL--T----QQTLN-----RYPECQPKAVIENYAQYAGVK-PEQVLVSRGADEGIELLIR 93 (356)
T ss_dssp CSEECSSCC--CSSCCC--CCC--C----CCCTT-----SCCCSSCHHHHHHHHHHHTSC-GGGEEEESHHHHHHHHHHH
T ss_pred ceEEeeCCC--CCCCCC--HhH--h----hhhhc-----cCCCccHHHHHHHHHHHhCCC-hHHEEEcCCHHHHHHHHHH
Confidence 689998875 578885 445 2 21111 122222467888888877643 3689999999999999999
Q ss_pred HHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcc
Q 005009 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (719)
Q Consensus 480 lA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (719)
... . +++.+|+....+||+....+.. .|.. .
T Consensus 94 ~~~-----~---------------~g~d~Vl~~~p~~~~~~~~~~~-~g~~----------------------------~ 124 (356)
T 1fg7_A 94 AFC-----E---------------PGKDAILYCPPTYGMYSVSAET-IGVE----------------------------C 124 (356)
T ss_dssp HHC-----C---------------TTTCEEEECSSSCTHHHHHHHH-HTCE----------------------------E
T ss_pred HHh-----C---------------CCCCEEEEeCCChHHHHHHHHH-cCCE----------------------------E
Confidence 771 1 2225799999999996544322 1110 0
Q ss_pred eeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCC
Q 005009 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (719)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (719)
..++..+.+ . -| .+.+++.+ . ++.+|++... +...|.+. |
T Consensus 125 ~~v~~~~~~------------~---------~d--------~~~l~~~i-------~--~~~~v~l~~p-~nptG~~~-~ 164 (356)
T 1fg7_A 125 RTVPTLDNW------------Q---------LD--------LQGISDKL-------D--GVKVVYVCSP-NNPTGQLI-N 164 (356)
T ss_dssp EECCCCTTS------------C---------CC--------HHHHHTSC-------T--TEEEEEEESS-CTTTCCCC-C
T ss_pred EEeeCCCCC------------C---------CC--------HHHHHHHh-------c--CCCEEEEeCC-CCCCCCCC-C
Confidence 011111000 0 00 13333222 1 4567777765 77778664 7
Q ss_pred HHHHHHHHHHHHhcCCcEEEeccccCccccCccccc-cccCCCcceeeehhccC-CCccchheeEeCHHHHhhhcC
Q 005009 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA-DLLGCVPDIACYGKLLT-GGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 640 ~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~-e~~gv~PDIvtlgK~Lg-gG~~Plsavl~~~~i~~~~~~ 713 (719)
.+.++++.++|+ ||+++|+||++++|++...++.. +.++....+.+++|.+| .| +++|++++++++++.+..
T Consensus 165 ~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~ 238 (356)
T 1fg7_A 165 PQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFALAG-LRCGFTLANEEVINLLMK 238 (356)
T ss_dssp HHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESSSTTCCGG-GCCEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEecchHhhcCch-hhhEEEEeCHHHHHHHHH
Confidence 899999999999 99999999999998753334433 33343444568999998 78 799999999999887653
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=2.1e-11 Score=131.10 Aligned_cols=194 Identities=14% Similarity=0.072 Sum_probs=120.7
Q ss_pred CCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccc
Q 005009 412 GPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEV 491 (719)
Q Consensus 412 ~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~ 491 (719)
.+|++ +|.+.+++.+++.+..... .....+...+|.++|+++++. ++++|++||++|++.|++.+ +. +
T Consensus 6 ~~~~~-~~~~~~~v~~a~~~~~~~~-~~~~~~~~~~l~~~la~~~~~---~~~~~~~sGt~al~~al~~~-~~---~--- 73 (367)
T 3nyt_A 6 DLKNQ-QARIKDKIDAGIQRVLRHG-QYILGPEVTELEDRLADFVGA---KYCISCANGTDALQIVQMAL-GV---G--- 73 (367)
T ss_dssp CCHHH-HHHHHHHHHHHHHHHHHHC-CCSSCHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHHHT-TC---C---
T ss_pred ccccc-ccccCHHHHHHHHHHHhcC-CccCChHHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHh-CC---C---
Confidence 46677 7666666555554432211 112467788999999999873 58999999999999999987 21 1
Q ss_pred cccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCc-chhhh
Q 005009 492 LVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP-EWLYS 570 (719)
Q Consensus 492 ~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P-~~~~~ 570 (719)
...+||+...+|++.... +...|... ..++.. +.+
T Consensus 74 -------------~gd~Vi~~~~~~~~~~~~-~~~~G~~~----------------------------~~~~~~~~~~-- 109 (367)
T 3nyt_A 74 -------------PGDEVITPGFTYVATAET-VALLGAKP----------------------------VYVDIDPRTY-- 109 (367)
T ss_dssp -------------TTCEEEEESSSCTHHHHH-HHHTTCEE----------------------------EEECBCTTTC--
T ss_pred -------------CcCEEEECCCccHHHHHH-HHHcCCEE----------------------------EEEecCCccC--
Confidence 124788888887774433 22222110 011110 000
Q ss_pred cccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHH
Q 005009 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650 (719)
Q Consensus 571 ~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc 650 (719)
..|. +.+++.+. +++++|+++.. . |...+ +++|.++|
T Consensus 110 ---------~~d~------------------~~l~~~i~--------~~~~~v~~~~~-~---G~~~~----~~~i~~la 146 (367)
T 3nyt_A 110 ---------NLDP------------------QLLEAAIT--------PRTKAIIPVSL-Y---GQCAD----FDAINAIA 146 (367)
T ss_dssp ---------SBCG------------------GGTGGGCC--------TTEEEECCBCG-G---GCCCC----HHHHHHHH
T ss_pred ---------CcCH------------------HHHHHhcC--------cCCcEEEeeCC-c---cChhh----HHHHHHHH
Confidence 0011 22333332 36788886664 4 33333 99999999
Q ss_pred HhcCCcEEEecccc-CccccCccccccccCCCcceeeeh----hccCC-CccchheeEe-CHHHHhhh
Q 005009 651 QNRKIPVIFDEVFT-GFWRLGVETTADLLGCVPDIACYG----KLLTG-GVIPLAATLA-TNAVFDSF 711 (719)
Q Consensus 651 ~k~gilLI~DEVqT-GfGRtG~~~a~e~~gv~PDIvtlg----K~Lgg-G~~Plsavl~-~~~i~~~~ 711 (719)
++||++||+||+|+ |+...|+. .+...|+++++ |.+|+ |. .|++++ ++++++.+
T Consensus 147 ~~~~~~li~D~a~~~g~~~~~~~-----~~~~~di~~~Sf~~~K~l~~~g~--gg~~~~~~~~l~~~~ 207 (367)
T 3nyt_A 147 SKYGIPVIEDAAQSFGASYKGKR-----SCNLSTVACTSFFPSAPLGCYGD--GGAIFTNDDELATAI 207 (367)
T ss_dssp HHTTCCBEEECTTTTTCEETTEE-----TTSSSSEEEEECCTTSSSCCSSC--CEEEEESCHHHHHHH
T ss_pred HHcCCEEEEECccccCCeECCee-----ccCCCCEEEEECCCCCcCCCcCc--eeEEEeCCHHHHHHH
Confidence 99999999999996 44333432 23334999987 99998 83 667777 46776654
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=5.7e-11 Score=127.99 Aligned_cols=195 Identities=12% Similarity=0.020 Sum_probs=128.1
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccC
Q 005009 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~ 497 (719)
+|++.+|+.+++... + . ....+...++.++|++.++.+..+.++|++||++|++.+++.++ +.
T Consensus 31 ~~~v~~a~~~~~~~~-~-~--~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~-----~~-------- 93 (393)
T 2huf_A 31 PQRVLDAMSRPILGH-L-H--PETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLCNLL-----ED-------- 93 (393)
T ss_dssp CHHHHHHTTSCCCCT-T-S--HHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHC-----CT--------
T ss_pred CHHHHHHHHhhhccC-C-C--HHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHh-----CC--------
Confidence 899999998876541 1 0 11234567888899988874311279999999999999999872 11
Q ss_pred CCccccCcceEEEEEeCCcccCccccc-cccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccc
Q 005009 498 KDTTEKCIELKVLALKGSYHGDTLGAM-EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHK 576 (719)
Q Consensus 498 ~~~~~~~~r~kII~~~~syHG~t~gal-slt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~ 576 (719)
..+|+....+||+.....+ ...|.. ...++.+...
T Consensus 94 --------gd~vl~~~~~~~~~~~~~~~~~~g~~----------------------------~~~v~~~~~~-------- 129 (393)
T 2huf_A 94 --------GDVILIGHTGHWGDRSADMATRYGAD----------------------------VRVVKSKVGQ-------- 129 (393)
T ss_dssp --------TCEEEEEESSHHHHHHHHHHHHTTCE----------------------------EEEEECCTTC--------
T ss_pred --------CCEEEEECCCcchHHHHHHHHHcCCe----------------------------eEEEeCCCCC--------
Confidence 2479999999998421111 001100 0111111000
Q ss_pred cccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCc
Q 005009 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656 (719)
Q Consensus 577 ~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gil 656 (719)
..| .+.+++.+.+ .++.+|+++.. +...|.+.+ +++|.++|++||++
T Consensus 130 ---~~d------------------~~~l~~~i~~-------~~~~~v~~~~~-~nptG~~~~----l~~i~~~~~~~~~~ 176 (393)
T 2huf_A 130 ---SLS------------------LDEIRDALLI-------HKPSVLFLTQG-DSSTGVLQG----LEGVGALCHQHNCL 176 (393)
T ss_dssp ---CCC------------------HHHHHHHHHH-------HCCSEEEEESE-ETTTTEECC----CTTHHHHHHHTTCE
T ss_pred ---CCC------------------HHHHHHHHhc-------cCCcEEEEEcc-CCCccccCC----HHHHHHHHHHcCCE
Confidence 011 2456666652 13567888886 888898877 89999999999999
Q ss_pred EEEeccccCccccCccccccccCCCcceeee--hhccCCCccchheeEeCHHHHhhhc
Q 005009 657 VIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 657 LI~DEVqTGfGRtG~~~a~e~~gv~PDIvtl--gK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
+|+||+|+ +|.. .+.... ..+|++++ +|.++|+ .++|++++++++++.+.
T Consensus 177 li~D~a~~-~~~~--~~~~~~--~~~d~~~~s~sK~l~g~-~G~G~~~~~~~~~~~~~ 228 (393)
T 2huf_A 177 LIVDTVAS-LGGA--PMFMDR--WEIDAMYTGSQKVLGAP-PGITPVSFSHRAVERYK 228 (393)
T ss_dssp EEEECTTT-BTTB--CCCTTT--TTCSEEECCSSSTTCCC-SSCEEEEECHHHHHHHH
T ss_pred EEEEcccc-cCCC--Ccchhh--cCccEEEECCCcccccC-CCeEEEEECHHHHHHHh
Confidence 99999985 5543 222222 24788865 5998865 45689999999988764
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.16 E-value=4.5e-10 Score=126.40 Aligned_cols=86 Identities=15% Similarity=0.094 Sum_probs=68.0
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC-Ccceeee--hhccCCCc
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIACY--GKLLTGGV 695 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv-~PDIvtl--gK~LggG~ 695 (719)
++.+|++... ....|.+.+ +++|.++|++||++|++||+++|+...+. +.....|+ .+|++++ .|.++++
T Consensus 258 ~~~~vv~~~~-~~~tG~~~~----l~~I~~l~~~~~~~l~vD~a~~~~~~~~~-~~~~~~gi~~~D~i~~s~hK~l~~p- 330 (497)
T 2qma_A 258 IPFAIVGTAG-TTDHGAIDD----LDFIADMAVKHDMWMHVDGAYGGALILSS-HKSRLKGVERAHSISVDFHKLFYQT- 330 (497)
T ss_dssp EEEEEEEEBS-CTTTCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGST-TGGGGTTGGGCSEEEEETTTTTCCC-
T ss_pred cceEEEEcCC-CCCCCCCCC----HHHHHHHHHHcCCEEEEehhhhHHHHhCc-chHhhcCcccCCEEEEcchhccCCC-
Confidence 3556777654 677788776 99999999999999999999998877666 55555677 8999987 9999988
Q ss_pred cchheeEeCHHH-Hhhh
Q 005009 696 IPLAATLATNAV-FDSF 711 (719)
Q Consensus 696 ~Plsavl~~~~i-~~~~ 711 (719)
+++|+++++++. ++.+
T Consensus 331 ~~~G~l~~~~~~~~~~~ 347 (497)
T 2qma_A 331 ISCGALLVNDKSNFKFL 347 (497)
T ss_dssp SSCEEEEESCGGGGGGG
T ss_pred cceEEEEEeCHHHHHHh
Confidence 589999987543 4444
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.4e-10 Score=129.93 Aligned_cols=210 Identities=12% Similarity=0.021 Sum_probs=131.6
Q ss_pred CCCCCCHHHHHHHHHhhhhcccccC---CCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccc
Q 005009 413 PDATLQIELARDMGYTAARFGHVMF---PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDH 489 (719)
Q Consensus 413 lGH~~hP~V~~Av~~q~~~~~~~~~---~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~ 489 (719)
.+|. +|++++++.++...+...+. .....+...+++++|+++.+.+ ..++++++|++|+..|++++ |.+...+
T Consensus 75 ~~~~-~p~v~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~--~~~~~~~ggt~a~~~al~~~-~~~~~~~ 150 (474)
T 1wyu_B 75 TMKY-NPKLHEEAARLFADLHPYQDPRTAQGALRLMWELGEYLKALTGMD--AITLEPAAGAHGELTGILII-RAYHEDR 150 (474)
T ss_dssp CCCC-CCHHHHHHHHTTSSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCS--EEECCCSSHHHHHHHHHHHH-HHHHHHT
T ss_pred cccC-CHHHHHHHHHHHHhcCCCCchhhChHHHHHHHHHHHHHHHHHCCC--ceeecChHHHHHHHHHHHHH-HHHHHhc
Confidence 5688 99999999877322211000 0001245678889999888742 23567899999999999999 5543222
Q ss_pred cccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhh
Q 005009 490 EVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLY 569 (719)
Q Consensus 490 G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~ 569 (719)
|. ..+|.+||..+ .+|+.+..++...|.. ...++....+
T Consensus 151 Gd-----------~~~r~~Vlv~~-~~h~~~~~~~~~~G~~----------------------------vv~v~~~~~~- 189 (474)
T 1wyu_B 151 GE-----------GRTRRVVLVPD-SAHGSNPATASMAGYQ----------------------------VREIPSGPEG- 189 (474)
T ss_dssp TC-----------TTTCCEEEEET-TSCTHHHHHHHHTTCE----------------------------EEEECBCTTS-
T ss_pred CC-----------ccCCCEEEEeC-CcChhhHHHHHHCCCE----------------------------EEEecCCCCC-
Confidence 21 01244666654 8888877665544321 0111111000
Q ss_pred hcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHH
Q 005009 570 SKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKE 649 (719)
Q Consensus 570 ~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~L 649 (719)
.-| .+.|++.+. +++++|+++.. . ..|.+. ..+++|.++
T Consensus 190 --------------------~~d--------~~~L~~~i~--------~~t~~v~~~~p-n-~~G~~~---~~l~~i~~l 228 (474)
T 1wyu_B 190 --------------------EVD--------LEALKRELG--------PHVAALMLTNP-N-TLGLFE---RRILEISRL 228 (474)
T ss_dssp --------------------SBC--------HHHHHHHCS--------TTEEEEEECSS-C-TTSCCC---TTHHHHHHH
T ss_pred --------------------CcC--------HHHHHHhhC--------CCceEEEEECC-C-CCcccC---CCHHHHHHH
Confidence 001 356676664 35889999974 3 467662 249999999
Q ss_pred HHhcCCcEEEeccccCccccCccccccccCCCcceeee--hhccCCC----ccchheeEeCHHHHhhhc
Q 005009 650 CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGG----VIPLAATLATNAVFDSFV 712 (719)
Q Consensus 650 c~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtl--gK~LggG----~~Plsavl~~~~i~~~~~ 712 (719)
|++||+++|+||++.. +.+|.. ....+ .+|++++ +|.+++. -.++|++++++++++.+.
T Consensus 229 ~~~~g~~li~Dea~~~-~~~g~~-~~~~~--g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~~~l~ 293 (474)
T 1wyu_B 229 CKEAGVQLYYDGANLN-AIMGWA-RPGDM--GFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLP 293 (474)
T ss_dssp HHHHTCEEEEEGGGGG-GTTTTC-CHHHH--TCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCC
T ss_pred HHHcCCEEEEeCchhh-hhccCC-CcccC--CCcEEEEeCccccccCCCCCCCCeEEEEEcHHHHHhCC
Confidence 9999999999999953 234421 11223 3899987 8988632 158999999999888764
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.15 E-value=4.1e-11 Score=128.35 Aligned_cols=192 Identities=11% Similarity=0.072 Sum_probs=120.1
Q ss_pred ccCCCCCCCHHHH---HHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhh
Q 005009 410 TQGPDATLQIELA---RDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486 (719)
Q Consensus 410 ~~~lGH~~hP~V~---~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~ 486 (719)
..++||+ +|.+. +++.+.+.... ....+...+|.++|+++++. +.++|++||++|++.|++.+ +.
T Consensus 8 ~~~l~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~la~~~~~---~~~~~~~~gt~a~~~~~~~~-~~-- 75 (374)
T 3uwc_A 8 YSYLERQ-FADIEPYLNDLREFIKTAD-----FTLGAELEKFEKRFAALHNA---PHAIGVGTGTDALAMSFKML-NI-- 75 (374)
T ss_dssp SCCHHHH-TSSCHHHHHHHHHHHHHTC-----CSSCHHHHHHHHHHHHHTTC---SEEEEESCHHHHHHHHHHHT-TC--
T ss_pred eeccccC-CCCchHHHHHHHHHHHcCC-----cccChhHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHc-CC--
Confidence 3445666 55544 44444443321 12467788999999999874 58999999999999999876 21
Q ss_pred ccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcc
Q 005009 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE 566 (719)
Q Consensus 487 ~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~ 566 (719)
....+|+....+||+.... +...|.. ...++..+
T Consensus 76 -----------------~~gd~v~~~~~~~~~~~~~-~~~~g~~----------------------------~~~~~~~~ 109 (374)
T 3uwc_A 76 -----------------GAGDEVITCANTFIASVGA-IVQAGAT----------------------------PVLVDSEN 109 (374)
T ss_dssp -----------------CTTCEEEEESSSCHHHHHH-HHHTTCE----------------------------EEEECBCT
T ss_pred -----------------CCCCEEEECCCccHHHHHH-HHHcCCE----------------------------EEEEecCC
Confidence 1124788888888885433 2222210 00111110
Q ss_pred hhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHH
Q 005009 567 WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRIL 646 (719)
Q Consensus 567 ~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~L 646 (719)
.+. -| .+.+++.+. .++.+|+ |. ...|...+ +++|
T Consensus 110 ~~~-----------~d------------------~~~l~~~~~--------~~~~~v~--~~--n~~G~~~~----~~~i 144 (374)
T 3uwc_A 110 GYV-----------ID------------------PEKIEAAIT--------DKTKAIM--PV--HYTGNIAD----MPAL 144 (374)
T ss_dssp TSS-----------BC------------------GGGTGGGCC--------TTEEEEC--CB--CGGGCCCC----HHHH
T ss_pred CCC-----------cC------------------HHHHHHhCC--------CCceEEE--Ee--CCcCCcCC----HHHH
Confidence 000 01 122333332 2566666 53 34566655 9999
Q ss_pred HHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeeh----hccCC-CccchheeEeCH-HHHhh
Q 005009 647 VKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG----KLLTG-GVIPLAATLATN-AVFDS 710 (719)
Q Consensus 647 r~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg----K~Lgg-G~~Plsavl~~~-~i~~~ 710 (719)
.++|++||+++|+||+|+. |..+..+..+..+|+++++ |.+|+ |. .|++++++ ++.+.
T Consensus 145 ~~~~~~~~~~li~D~~~~~----g~~~~~~~~~~~~d~~~~s~~~~K~l~~~g~--~g~~~~~~~~~~~~ 208 (374)
T 3uwc_A 145 AKIAKKHNLHIVEDACQTI----LGRINDKFVGSWGQFACFSLHPLKNLNVWSD--AGVIITHSDEYAEK 208 (374)
T ss_dssp HHHHHHTTCEEEEECTTCT----TCEETTEETTSSSSEEEEECSSSSSSCCSSC--CEEEEESCHHHHHH
T ss_pred HHHHHHcCCEEEEeCCCcc----CceeCCeeccccccEEEEeCCCCCcCCccce--eEEEEeCCHHHHHH
Confidence 9999999999999999973 3335556667678999988 99988 73 67777654 55443
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.15 E-value=5.3e-11 Score=127.95 Aligned_cols=194 Identities=12% Similarity=0.077 Sum_probs=121.4
Q ss_pred CCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccc
Q 005009 412 GPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEV 491 (719)
Q Consensus 412 ~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~ 491 (719)
++||+ +|.+.+++.+++.+...... ....+...++.++|+++++ .+.++|++||++|++.|++.+ +. +
T Consensus 7 ~l~~~-~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l~~~la~~~~---~~~~i~~~sgt~al~~~l~~l-~~---~--- 74 (373)
T 3frk_A 7 SFKPM-HDEIEYEIKFKFEEIYKRNW-FILGDEDKKFEQEFADYCN---VNYCIGCGNGLDALHLILKGY-DI---G--- 74 (373)
T ss_dssp CCHHH-HHHHHHHHHHHHHHHHHHTC-CSSSHHHHHHHHHHHHHHT---SSEEEEESCHHHHHHHHHHHT-TC---C---
T ss_pred CCCcc-cCCCCHHHHHHHHHHHHCCC-ccCCchHHHHHHHHHHHhC---CCeEEEeCCHHHHHHHHHHHc-CC---C---
Confidence 46777 77766666655544322111 1345778899999999987 368999999999999999876 11 1
Q ss_pred cccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCc-chhhh
Q 005009 492 LVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP-EWLYS 570 (719)
Q Consensus 492 ~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P-~~~~~ 570 (719)
...+||+...+||+.. .++...|... ..++.. +.+.
T Consensus 75 -------------~gd~Vi~~~~~~~~~~-~~~~~~g~~~----------------------------~~~~~~~~~~~- 111 (373)
T 3frk_A 75 -------------FGDEVIVPSNTFIATA-LAVSYTGAKP----------------------------IFVEPDIRTYN- 111 (373)
T ss_dssp -------------TTCEEEEETTSCTHHH-HHHHHHSCEE----------------------------EEECEETTTTE-
T ss_pred -------------CcCEEEECCCCcHHHH-HHHHHcCCEE----------------------------EEEeccccccC-
Confidence 1247888888888843 3333332110 001100 0000
Q ss_pred cccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHH
Q 005009 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650 (719)
Q Consensus 571 ~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc 650 (719)
-| .+.+++.+. .++.+|++. ...|...+ +++|.++|
T Consensus 112 ----------~d------------------~~~l~~~l~--------~~~~~v~~~----n~~G~~~~----l~~i~~l~ 147 (373)
T 3frk_A 112 ----------ID------------------PSLIESAIT--------EKTKAIIAV----HLYGQPAD----MDEIKRIA 147 (373)
T ss_dssp ----------EC------------------GGGTGGGCC--------TTEEEEEEE----CCTTCCCC----HHHHHHHH
T ss_pred ----------cC------------------HHHHHHhcC--------CCCeEEEEE----CCCcCccc----HHHHHHHH
Confidence 01 122333332 256777733 33455555 89999999
Q ss_pred HhcCCcEEEeccccCccccCccccccccCCCcceeeeh----hccCC-CccchheeEeC-HHHHhh
Q 005009 651 QNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG----KLLTG-GVIPLAATLAT-NAVFDS 710 (719)
Q Consensus 651 ~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg----K~Lgg-G~~Plsavl~~-~~i~~~ 710 (719)
++||+++|+||+|+ + |..+....++..+|+++++ |++|+ |. .|+++++ +++.+.
T Consensus 148 ~~~~~~li~D~a~~-~---g~~~~~~~~~~~~d~~~~S~~~~K~l~~~g~--gg~~~~~~~~~~~~ 207 (373)
T 3frk_A 148 KKYNLKLIEDAAQA-H---GSLYKGMKVGSLGDAAGFSFYPAKNLGSLGD--GGAVVTNDKDLAEK 207 (373)
T ss_dssp HHHTCEEEEECTTC-T---TCEETTEETTSSSSEEEEECCTTSSSCCSSS--CEEEEESCHHHHHH
T ss_pred HHcCCEEEEECCcc-c---CCEECCEeccccccEEEEeCcCCCccCccce--eEEEEeCCHHHHHH
Confidence 99999999999996 2 2234445666668999988 99988 73 5667765 445543
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.2e-10 Score=130.69 Aligned_cols=209 Identities=11% Similarity=0.002 Sum_probs=132.7
Q ss_pred CCCCCHHHHHHHHHhhhhcccccCCCC-CC----hHHHHHHHHHHhccCCC-CCCeEEEeCChHHHHHHHHHHHHHHhhc
Q 005009 414 DATLQIELARDMGYTAARFGHVMFPEN-VY----EPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAFRKFSF 487 (719)
Q Consensus 414 GH~~hP~V~~Av~~q~~~~~~~~~~~~-~~----~~~~~Lae~L~~~~~~~-~~~rv~f~~SGsEA~E~AlKlA~r~~~~ 487 (719)
-|+ ++.+.+++.+++..+...+...+ .. +...++.++++++++.+ ..+.++|+++|+||+..|++.+ +.+..
T Consensus 74 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~-~~~~~ 151 (497)
T 3mc6_A 74 YHG-GDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSA-KMYAL 151 (497)
T ss_dssp SCC-CHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHH-HHHHH
T ss_pred CCC-chHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHH-HHHHH
Confidence 356 68999999999887654321111 12 33446777777777642 1357999999999999999999 54433
Q ss_pred c-ccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcc
Q 005009 488 D-HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE 566 (719)
Q Consensus 488 ~-~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~ 566 (719)
+ +|. .+..|+. ....|.....++...|.. ...++..+
T Consensus 152 ~~~g~-------------~~~~Vi~-~~~~h~~~~~~~~~~G~~----------------------------~~~v~~~~ 189 (497)
T 3mc6_A 152 HHRGI-------------TEPEIIA-PVTAHAGFDKAAYYFGMK----------------------------LRHVELDP 189 (497)
T ss_dssp HHSCC-------------SSCEEEE-ETTSCHHHHHHHHHSCCE----------------------------EEEECBCT
T ss_pred hcCCC-------------CCceEEE-eCCccHHHHHHHHHcCCe----------------------------EEEEecCc
Confidence 2 221 1234554 555566555544444321 01122111
Q ss_pred -hhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHH
Q 005009 567 -WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRI 645 (719)
Q Consensus 567 -~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~ 645 (719)
.++ .| .+.|++.+. .++++|+++.. +...|.+.+ +++
T Consensus 190 ~~~~-----------~d------------------~~~l~~~i~--------~~~~~v~~~~p-~nptG~~~~----l~~ 227 (497)
T 3mc6_A 190 TTYQ-----------VD------------------LGKVKKFIN--------KNTVLLVGSAP-NFPHGIADD----IEG 227 (497)
T ss_dssp TTCS-----------BC------------------TTTTGGGCC--------SSEEEEEEETT-CTTTCCCCS----CTT
T ss_pred ccCc-----------CC------------------HHHHHHHHh--------hCCEEEEEECC-CCCCCcCCC----HHH
Confidence 110 01 123444442 35789999987 888898877 889
Q ss_pred HHHHHHhcCCcEEEeccccCcccc-------Ccc--ccccccCCCcceee--ehhccCCCccchheeEeCHHHHhhh
Q 005009 646 LVKECQNRKIPVIFDEVFTGFWRL-------GVE--TTADLLGCVPDIAC--YGKLLTGGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 646 Lr~Lc~k~gilLI~DEVqTGfGRt-------G~~--~a~e~~gv~PDIvt--lgK~LggG~~Plsavl~~~~i~~~~ 711 (719)
|.++|++||++||+||+++|+.+. |.. +.+...|+ |+++ ..|.+.+| .++|+++++++.+...
T Consensus 228 i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~--d~~~~s~~K~l~~~-~~~g~~~~~~~~~~~~ 301 (497)
T 3mc6_A 228 LGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGV--TSISCDTHKYGFAP-KGSSVIMYRNSDLRMH 301 (497)
T ss_dssp TTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTC--CEEEEETTTTTCCC-SSCEEEECSSHHHHTT
T ss_pred HHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCC--cEEEECchhhcCCC-CCceeEEecCHHHHhh
Confidence 999999999999999999987554 222 44455565 7665 45988777 6889999988776543
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=4.1e-10 Score=122.66 Aligned_cols=227 Identities=12% Similarity=0.032 Sum_probs=132.6
Q ss_pred eeeeccccccccCCCCC-CCHHHHHHHHH-hhhhcc-ccc-CCCCCChHHHHHHHHHHhccCCC-CCCeEEE--eCChHH
Q 005009 400 QQFDACASWWTQGPDAT-LQIELARDMGY-TAARFG-HVM-FPENVYEPALECAELLLQGVGKG-WASRAYF--SDNGST 472 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~-~hP~V~~Av~~-q~~~~~-~~~-~~~~~~~~~~~Lae~L~~~~~~~-~~~rv~f--~~SGsE 472 (719)
.++||.+|.....-|+. ..|.|.+|+.+ +++... +.. ......+....+++.+....+.. .-++++| +++|++
T Consensus 30 ~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g~~~ 109 (412)
T 1yaa_A 30 TKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTG 109 (412)
T ss_dssp SCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHH
T ss_pred CeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccchHh
Confidence 78899887654444442 15899999998 775311 110 01112233334444443211100 0258999 999999
Q ss_pred HHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCc
Q 005009 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (719)
Q Consensus 473 A~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (719)
|++.+++++ +.+. .| .+|+....+||+....+.. .|..
T Consensus 110 a~~~~~~~~-~~~~--~g----------------d~Vl~~~p~~~~~~~~~~~-~g~~---------------------- 147 (412)
T 1yaa_A 110 ALHISAKFF-SKFF--PD----------------KLVYLSKPTWANHMAIFEN-QGLK---------------------- 147 (412)
T ss_dssp HHHHHHHHH-HHHC--TT----------------CCEEEEESCCTTHHHHHHT-TTCC----------------------
T ss_pred HHHHHHHHH-HHhC--CC----------------CEEEEeCCCCccHHHHHHH-cCce----------------------
Confidence 999998877 4332 22 3799999999985433221 1110
Q ss_pred ccccCcceeecC--cchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc
Q 005009 553 VFMYNSKWILSL--PEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630 (719)
Q Consensus 553 ~~~~~~~~~~~~--P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViq 630 (719)
...++. ++.+ .-| .+.+++.+.+ .+...+.+++... +
T Consensus 148 ------~~~v~~~~~~~~---------------------~~d--------~~~l~~~l~~-----~~~~~~~~~~~~p-~ 186 (412)
T 1yaa_A 148 ------TATYPYWANETK---------------------SLD--------LNGFLNAIQK-----APEGSIFVLHSCA-H 186 (412)
T ss_dssp ------EEEEECEETTTT---------------------EEC--------HHHHHHHHHH-----SCTTCEEEEECSS-C
T ss_pred ------EEEEeeecCCCC---------------------ccC--------HHHHHHHHHh-----CCCCCEEEEeCCC-C
Confidence 001111 0000 001 2556677753 1222334443433 5
Q ss_pred cCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccC---cccccccc-CCCc----ce--eeehhccCC-Cccchh
Q 005009 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLG---VETTADLL-GCVP----DI--ACYGKLLTG-GVIPLA 699 (719)
Q Consensus 631 g~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG---~~~a~e~~-gv~P----DI--vtlgK~Lgg-G~~Pls 699 (719)
...|. ..+.+.+++|.++|++||+++|+||++++|+..| ..+....+ ...+ ++ .+++|.+|. | +++|
T Consensus 187 nPtG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-lriG 264 (412)
T 1yaa_A 187 NPTGL-DPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYG-ERVG 264 (412)
T ss_dssp TTTCC-CCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGG-GCEE
T ss_pred CCCCC-CCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEeccCCCCCCcC-Ccce
Confidence 65665 4578999999999999999999999999997665 33333221 1233 33 378999998 8 7999
Q ss_pred eeE--e-----CHH----HHhhh
Q 005009 700 ATL--A-----TNA----VFDSF 711 (719)
Q Consensus 700 avl--~-----~~~----i~~~~ 711 (719)
+++ + +++ +.+.+
T Consensus 265 ~~~~~~~~~~~~~~~~~~l~~~l 287 (412)
T 1yaa_A 265 CFHLALTKQAQNKTIKPAVTSQL 287 (412)
T ss_dssp EEEEECCSCTTHHHHHHHHHHHH
T ss_pred EEEEEecCCCCCHHHHHHHHHHH
Confidence 988 7 565 66554
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.12 E-value=6.6e-10 Score=120.31 Aligned_cols=209 Identities=10% Similarity=-0.017 Sum_probs=134.9
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCC-----CChHHHHHHHHHHhccCCCCCCeEEEeCChHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPEN-----VYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~-----~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~ 474 (719)
.|||..+. ++. +|+|.+|+.++++.........+ ..+...++.++|+++++.. .+.++|+++|++|+
T Consensus 28 ~~ld~~~~------~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~t~al 99 (406)
T 3cai_A 28 VHFDAPAG------MLI-PDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNAD-PGGVVLGADRAVLL 99 (406)
T ss_dssp EECBGGGC------CCC-CHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCC-GGGEEEESCHHHHH
T ss_pred EEEeCCCc------CCC-CHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEeCChHHHH
Confidence 78887653 367 99999999999986432110111 1345678888999888743 35899999999999
Q ss_pred HHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccc---cCCCCCCCCCCCCCccCCCcccCCC
Q 005009 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA---QAPSPYTGFLQQPWYSGRGLFLDPP 551 (719)
Q Consensus 475 E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galsl---t~~~~~~~~~~~~~~~~~~~~~~~p 551 (719)
+.+++...+.. . ...+||....+||+.......+ .|..
T Consensus 100 ~~~~~~l~~~~--~----------------~gd~vi~~~~~~~~~~~~~~~~~~~~g~~--------------------- 140 (406)
T 3cai_A 100 SLLAEASSSRA--G----------------LGYEVIVSRLDDEANIAPWLRAAHRYGAK--------------------- 140 (406)
T ss_dssp HHHHHHTGGGG--B----------------TTCEEEEETTSCGGGTHHHHHHHHHHBCE---------------------
T ss_pred HHHHHHHhhcc--C----------------CCCEEEEcCCccHHHHHHHHHHHHhcCCe---------------------
Confidence 99887541111 1 1247888888888743322221 1110
Q ss_pred cccccCcceeecCc-chhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc
Q 005009 552 TVFMYNSKWILSLP-EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630 (719)
Q Consensus 552 ~~~~~~~~~~~~~P-~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViq 630 (719)
...++.. +.. ..| .+.|++.+. .++.+|+++++ +
T Consensus 141 -------v~~v~~~~~~~-----------~~d------------------~~~l~~~l~--------~~~~~v~~~~~-~ 175 (406)
T 3cai_A 141 -------VKWAEVDIETG-----------ELP------------------TWQWESLIS--------KSTRLVAVNSA-S 175 (406)
T ss_dssp -------EEEECCCTTTC-----------CCC------------------GGGHHHHCC--------TTEEEEEEESB-C
T ss_pred -------EEEEecCcccC-----------CcC------------------HHHHHHHhC--------CCceEEEEeCC-c
Confidence 0011111 000 001 134555553 35789999997 8
Q ss_pred cCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceee--ehhccCCCccchh-eeEeCHHH
Q 005009 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLA-ATLATNAV 707 (719)
Q Consensus 631 g~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvt--lgK~LggG~~Pls-avl~~~~i 707 (719)
+..|.+.+ +++|.++|++||+++|+||+|+ +|... +....++ +|+++ ++|.+|.+ +| ++++++++
T Consensus 176 nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~~--~~~~~~~--~d~~~~s~~K~~g~~---~G~~~~~~~~~ 243 (406)
T 3cai_A 176 GTLGGVTD----LRAMTKLVHDVGALVVVDHSAA-APYRL--LDIRETD--ADVVTVNAHAWGGPP---IGAMVFRDPSV 243 (406)
T ss_dssp TTTCBBCC----CHHHHHHHHHTTCEEEEECTTT-TTTCC--CCHHHHC--CSEEEEEGGGGTSCS---CEEEEESCHHH
T ss_pred CCccccCC----HHHHHHHHHHcCCEEEEEcccc-cCCCC--CCchhcC--CCEEEeehhhhcCCC---cCeEEEEehHH
Confidence 99998887 8999999999999999999996 33221 3333344 78875 57976533 88 89999998
Q ss_pred Hhhhc
Q 005009 708 FDSFV 712 (719)
Q Consensus 708 ~~~~~ 712 (719)
++.+.
T Consensus 244 ~~~l~ 248 (406)
T 3cai_A 244 MNSFG 248 (406)
T ss_dssp HHTSC
T ss_pred HhhcC
Confidence 87664
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.5e-10 Score=125.51 Aligned_cols=203 Identities=16% Similarity=0.022 Sum_probs=128.5
Q ss_pred CCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeE-EEeCChHHHHHHHHHHHHHHhhcccc
Q 005009 412 GPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRA-YFSDNGSTAIEIALKMAFRKFSFDHE 490 (719)
Q Consensus 412 ~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv-~f~~SGsEA~E~AlKlA~r~~~~~~G 490 (719)
++|++ .+.+.+++.+++.+...........+...++.++|++..+.. .+.+ ++++||++|++.+++... .
T Consensus 14 ~~~p~-p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~~~~~~~s~t~al~~~~~~l~-----~-- 84 (416)
T 3isl_A 14 IMTPG-PVEVDPRVLRVMSTPVVGQFDPAFTGIMNETMEMLRELFQTK-NRWAYPIDGTSRAGIEAVLASVI-----E-- 84 (416)
T ss_dssp ECSSS-SCCCCHHHHHHTTSCCCCTTSHHHHHHHHHHHHHHHHHTTCC-CSEEEEEESCHHHHHHHHHHHHC-----C--
T ss_pred eecCC-CcCcCHHHHHHhcccCCCCccHHHHHHHHHHHHHHHHHhCCC-CCcEEEecCcHHHHHHHHHHHhc-----C--
Confidence 35665 555555555555542221111111345678889999988754 2444 489999999999998761 1
Q ss_pred ccccccCCCccccCcceEEEEEeCCcccCccc-cccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhh
Q 005009 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLG-AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLY 569 (719)
Q Consensus 491 ~~~~~~~~~~~~~~~r~kII~~~~syHG~t~g-alslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~ 569 (719)
...+||....+|||.... .+...|.. ...++.+...
T Consensus 85 --------------~gd~Vl~~~~~~~~~~~~~~~~~~g~~----------------------------~~~v~~~~~~- 121 (416)
T 3isl_A 85 --------------PEDDVLIPIYGRFGYLLTEIAERYGAN----------------------------VHMLECEWGT- 121 (416)
T ss_dssp --------------TTCEEEEEESSHHHHHHHHHHHHTTCE----------------------------EEEEECCTTC-
T ss_pred --------------CCCEEEEecCCcccHHHHHHHHhcCCe----------------------------eEEEecCCCC-
Confidence 124899999999984322 11111110 0111111000
Q ss_pred hcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHH
Q 005009 570 SKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKE 649 (719)
Q Consensus 570 ~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~L 649 (719)
..| .+.+++.+.+ .++.+|+++.. ++..|...+ +++|.++
T Consensus 122 ----------~~d------------------~~~l~~~i~~-------~~~~~v~~~~~-~nptG~~~~----l~~i~~l 161 (416)
T 3isl_A 122 ----------VFD------------------PEDIIREIKK-------VKPKIVAMVHG-ETSTGRIHP----LKAIGEA 161 (416)
T ss_dssp ----------CCC------------------HHHHHHHHHH-------HCCSEEEEESE-ETTTTEECC----CHHHHHH
T ss_pred ----------CCC------------------HHHHHHHHhh-------CCCcEEEEEcc-CCCCceecC----HHHHHHH
Confidence 001 2567777752 24578899987 899998887 8999999
Q ss_pred HHhcCCcEEEeccccCccccCccccccccCCCcceee--ehhccCCCccchheeEeCHHHHhhhc
Q 005009 650 CQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 650 c~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvt--lgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
|++||+++|+||+|+ +|.. .+..+.+ .+|+++ +.|.|+|+ .++|++++++++++.+.
T Consensus 162 ~~~~~~~li~D~a~~-~~~~--~~~~~~~--~~d~~~~s~~K~l~g~-~g~g~~~~~~~~~~~~~ 220 (416)
T 3isl_A 162 CRTEDALFIVDAVAT-IGGC--EVKVDEW--KIDAAIGGTQKCLSVP-SGMAPITYNERVADVIA 220 (416)
T ss_dssp HHHTTCEEEEECTTT-TTTS--CCCTTTT--TCSEEECCSSSTTCCC-SSEEEEEECHHHHHHHH
T ss_pred HHHcCCEEEEECCcc-ccCC--Ccchhhc--CCCEEEecCccccCCC-CCeEEEEECHHHHHHhh
Confidence 999999999999996 3322 1222223 367775 45998887 57899999999987765
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1e-10 Score=123.25 Aligned_cols=193 Identities=15% Similarity=0.054 Sum_probs=129.3
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCC-CCCeEEEeCChHHHHHHHHHHHHHHhhcccccccccc
Q 005009 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~-~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~ 496 (719)
+|+|.+|+.+++.. +.. ....+...++.+.|++.++.+ ..+.++|+++|++|++.+++.+.
T Consensus 12 ~~~v~~a~~~~~~~--~~~--~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~-------------- 73 (353)
T 2yrr_A 12 PERVQKALLRPMRG--HLD--PEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLD-------------- 73 (353)
T ss_dssp CHHHHGGGGSCCCC--TTC--HHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCS--------------
T ss_pred CHHHHHHHhccccc--ccC--HHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhc--------------
Confidence 89999999887764 210 011344678899999987642 12579999999999999998761
Q ss_pred CCCccccCcceEEEEEeCCcccCcccc-ccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhccccc
Q 005009 497 GKDTTEKCIELKVLALKGSYHGDTLGA-MEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEH 575 (719)
Q Consensus 497 ~~~~~~~~~r~kII~~~~syHG~t~ga-lslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~ 575 (719)
+ .+|+..+.+||+..... ....|.. ...++.+..+
T Consensus 74 --------~-d~vl~~~~~~~~~~~~~~~~~~g~~----------------------------~~~v~~~~~~------- 109 (353)
T 2yrr_A 74 --------R-GPVLVLVNGAFSQRVAEMAALHGLD----------------------------PEVLDFPPGE------- 109 (353)
T ss_dssp --------C-CCEEEEECSHHHHHHHHHHHHTTCC----------------------------EEEEECCTTS-------
T ss_pred --------C-CcEEEEcCCCchHHHHHHHHHcCCc----------------------------eEEEeCCCCC-------
Confidence 1 36888999999851111 1111100 0111111100
Q ss_pred ccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCC
Q 005009 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655 (719)
Q Consensus 576 ~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gi 655 (719)
..| .+.+++.+.+ . ++.+|+++.. +...|.+.+ +++|.++|++||+
T Consensus 110 ----~~d------------------~~~l~~~l~~-----~--~~~~v~~~~~-~nptG~~~~----~~~i~~l~~~~~~ 155 (353)
T 2yrr_A 110 ----PVD------------------PEAVARALKR-----R--RYRMVALVHG-ETSTGVLNP----AEAIGALAKEAGA 155 (353)
T ss_dssp ----CCC------------------HHHHHHHHHH-----S--CCSEEEEESE-ETTTTEECC----HHHHHHHHHHHTC
T ss_pred ----CCC------------------HHHHHHHHHh-----C--CCCEEEEEcc-CCCcceecC----HHHHHHHHHHcCC
Confidence 011 2556777753 1 4567888887 888898877 8899999999999
Q ss_pred cEEEeccccCccccCccccccccCCCcceeee--hhccCCCccchheeEeCHHHHhhhc
Q 005009 656 PVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 656 lLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtl--gK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
++|+||++ ++|++. +....+ .+|++++ +|.++|+ ..+|++++++++++.+.
T Consensus 156 ~li~D~a~-~~~~~~--~~~~~~--~~d~~~~s~~K~~~~~-~g~G~~~~~~~~~~~l~ 208 (353)
T 2yrr_A 156 LFFLDAVT-TLGMLP--FSMRAM--GVDYAFTGSQKCLSAP-PGLAPIAASLEARKAFT 208 (353)
T ss_dssp EEEEECTT-TTTTSC--CCHHHH--TCSEEECCTTSTTCCC-SSCEEEEECHHHHHHCC
T ss_pred eEEEEcCc-cccccc--cccccc--CceEEEecCcccccCC-CceEEEEECHHHHHHhc
Confidence 99999999 677653 223333 3688865 6999876 35799999999987664
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.09 E-value=3.4e-10 Score=125.63 Aligned_cols=196 Identities=11% Similarity=0.018 Sum_probs=118.4
Q ss_pred CCCCHHHHHHHHHhhh-hcccccCC-C--CCCh---HHHHHH-HHHHhccCCCCCCeEEE-eCChHHHHHHHHHHHHHHh
Q 005009 415 ATLQIELARDMGYTAA-RFGHVMFP-E--NVYE---PALECA-ELLLQGVGKGWASRAYF-SDNGSTAIEIALKMAFRKF 485 (719)
Q Consensus 415 H~~hP~V~~Av~~q~~-~~~~~~~~-~--~~~~---~~~~La-e~L~~~~~~~~~~rv~f-~~SGsEA~E~AlKlA~r~~ 485 (719)
+. +|+|++|+.+++. .+.+.... . ...+ ...+++ ++|++.++. +.+.+ ++||++|++.|++.++
T Consensus 56 ~~-~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~---~~~~v~~~sGs~a~~~a~~~~~--- 128 (447)
T 3h7f_A 56 FV-PRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGA---EFANVQPHSGAQANAAVLHALM--- 128 (447)
T ss_dssp CC-CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC---SEEECCCSSHHHHHHHHHHHHC---
T ss_pred CC-CHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCC---CceEEEeCCHHHHHHHHHHHhc---
Confidence 45 8999999999885 44332110 0 1112 335677 888888873 55666 9999999999999772
Q ss_pred hccccccccccCCCccccCcceEEEEEeCCcccCc-ccc-ccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeec
Q 005009 486 SFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT-LGA-MEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILS 563 (719)
Q Consensus 486 ~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t-~ga-lslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 563 (719)
+.| .+|++...+|++.. .+. +..++.. + ..++
T Consensus 129 --~~G----------------d~Vl~~~~~~~~~~~~~~~~~~~g~~-~---------------------------~~~~ 162 (447)
T 3h7f_A 129 --SPG----------------ERLLGLDLANGGHLTHGMRLNFSGKL-Y---------------------------ENGF 162 (447)
T ss_dssp --CTT----------------CEEEEECGGGTCCGGGTCTTSHHHHS-S---------------------------EEEE
T ss_pred --CCC----------------CEEEecCcccccccchhhhhhhcCCe-e---------------------------EEEE
Confidence 122 37888888877632 221 1121100 0 0111
Q ss_pred Cc---chhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE-ccccccCCccccCC
Q 005009 564 LP---EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII-EPVVHAAGGMHMVD 639 (719)
Q Consensus 564 ~P---~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIv-EPViqg~gG~~~pp 639 (719)
+| +.+ ..| .+.+++.+.+. +..+|++ .|. .+.++
T Consensus 163 ~~~~~~~~-----------~~d------------------~~~l~~~i~~~-------~~~~i~~~~~~-~~~~~----- 200 (447)
T 3h7f_A 163 YGVDPATH-----------LID------------------MDAVRATALEF-------RPKVIIAGWSA-YPRVL----- 200 (447)
T ss_dssp ECCCTTTC-----------SCC------------------HHHHHHHHHHH-------CCSEEEEECSS-CCSCC-----
T ss_pred cCcCcccC-----------CcC------------------HHHHHHHHHhc-------CCeEEEEcCCC-CCCcc-----
Confidence 11 000 011 25566666421 1225555 565 44433
Q ss_pred HHHHHHHHHHHHhcCCcEEEeccc-cCccccCccccccccCCCccee--eehhccCCCccchheeEeCHHHHhhhc
Q 005009 640 PLFQRILVKECQNRKIPVIFDEVF-TGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 640 ~~fl~~Lr~Lc~k~gilLI~DEVq-TGfGRtG~~~a~e~~gv~PDIv--tlgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
++++|+++|++||++||+||+| +|+...|...... . ..|++ +++|+++| .+.|.+++++++.+.+.
T Consensus 201 --~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~--~-~~di~~~s~sK~l~G--~~gG~i~~~~~~~~~l~ 269 (447)
T 3h7f_A 201 --DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPV--P-HADVVSTTVHKTLGG--GRSGLIVGKQQYAKAIN 269 (447)
T ss_dssp --CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST--T-TCSEEEEESSGGGCC--CSCEEEEECGGGHHHHH
T ss_pred --CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCC--C-CCcEEEecCCcCCCC--CCeEEEEECHHHHHHHh
Confidence 6999999999999999999997 5665666533211 1 24776 67999974 35677888888876653
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.09 E-value=3.1e-10 Score=123.17 Aligned_cols=195 Identities=11% Similarity=-0.064 Sum_probs=108.8
Q ss_pred CCCCCHHHHHHHHHhh-hhcccccC---CCCCChHHHH----HHHHHHhccCCCCCCeE-EEeCChHHHHHHHHHHHHHH
Q 005009 414 DATLQIELARDMGYTA-ARFGHVMF---PENVYEPALE----CAELLLQGVGKGWASRA-YFSDNGSTAIEIALKMAFRK 484 (719)
Q Consensus 414 GH~~hP~V~~Av~~q~-~~~~~~~~---~~~~~~~~~~----Lae~L~~~~~~~~~~rv-~f~~SGsEA~E~AlKlA~r~ 484 (719)
.+. ||+|++|+.+++ +.+..... .........+ +.+++++.++. +.. ++++||++|++.|++.+.
T Consensus 35 ~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~---~~~~i~~~sGt~a~~~~~~~~~-- 108 (417)
T 3n0l_A 35 NFT-LPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNC---KFANVQPNSGSQANQGVYAALI-- 108 (417)
T ss_dssp CCC-CHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC---SEEECCCSSHHHHHHHHHHHHS--
T ss_pred CCC-CHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCC---CCcceEeccHHHHHHHHHHHhc--
Confidence 356 899999999998 44322110 0011223333 34477777763 333 567899999999998872
Q ss_pred hhccccccccccCCCccccCcceEEEEEeCCcccCccc--cccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceee
Q 005009 485 FSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLG--AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWIL 562 (719)
Q Consensus 485 ~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~g--alslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 562 (719)
+. ..+|+....+||+.... .+...+. +...+
T Consensus 109 ---~~----------------gd~vl~~~~~~~~~~~~~~~~~~~g~----------------------------~~~~~ 141 (417)
T 3n0l_A 109 ---NP----------------GDKILGMDLSHGGHLTHGAKVSSSGK----------------------------MYESC 141 (417)
T ss_dssp ---CT----------------TCEEEEECC----------------C----------------------------CSEEE
T ss_pred ---CC----------------CCEEEecccccccccchhhhhhhhcc----------------------------eeeeE
Confidence 11 24788888888764221 1111110 00011
Q ss_pred cCc--chhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCH
Q 005009 563 SLP--EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDP 640 (719)
Q Consensus 563 ~~P--~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~ 640 (719)
++| +.+ ..| .+.+++.+.+ .++.+|++. ++..|...+
T Consensus 142 ~~~~~~~~-----------~~d------------------~~~l~~~i~~-------~~~~~v~~~---~~~~G~~~~-- 180 (417)
T 3n0l_A 142 FYGVELDG-----------RID------------------YEKVREIAKK-------EKPKLIVCG---ASAYARVID-- 180 (417)
T ss_dssp EECCCTTS-----------SCC------------------HHHHHHHHHH-------HCCSEEEEC---CSSCCSCCC--
T ss_pred eccCCCCC-----------CcC------------------HHHHHHHHHh-------cCCeEEEEC---CcccCccCC--
Confidence 111 000 011 2567777752 134456643 333577665
Q ss_pred HHHHHHHHHHHhcCCcEEEecccc-CccccCccccccccCC--Ccceeeeh--hccCCCccchheeEeC-HHHHhhh
Q 005009 641 LFQRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLLGC--VPDIACYG--KLLTGGVIPLAATLAT-NAVFDSF 711 (719)
Q Consensus 641 ~fl~~Lr~Lc~k~gilLI~DEVqT-GfGRtG~~~a~e~~gv--~PDIvtlg--K~LggG~~Plsavl~~-~~i~~~~ 711 (719)
+++|+++|++||++||+||+|+ |+...|. +.+. ..|+++++ |+++|+ ..|+++++ +++.+.+
T Consensus 181 --l~~i~~l~~~~~~~li~Dea~~~g~~~~~~-----~~~~~~~~di~~~s~sK~l~g~--~~G~~~~~~~~~~~~~ 248 (417)
T 3n0l_A 181 --FAKFREIADEIGAYLFADIAHIAGLVVAGE-----HPSPFPYAHVVSSTTHKTLRGP--RGGIIMTNDEELAKKI 248 (417)
T ss_dssp --HHHHHHHHHHHTCEEEEECTTTHHHHHTTS-----SCCCTTTCSEEEEESSTTTCSC--SCEEEEESCHHHHHHH
T ss_pred --HHHHHHHHHHcCCEEEEECccchhhhhccc-----CCCccccceEEEeeCccccCCC--CeeEEEECCHHHHHHH
Confidence 9999999999999999999984 3322222 1111 35898777 999665 36888888 6877665
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.4e-10 Score=125.58 Aligned_cols=192 Identities=12% Similarity=0.041 Sum_probs=117.5
Q ss_pred CCCCCCC----HHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhc
Q 005009 412 GPDATLQ----IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSF 487 (719)
Q Consensus 412 ~lGH~~h----P~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~ 487 (719)
+++++ + +++.+++.+++....+ ....+...+|.+.|+++++. ++++|++||++|++.|++.+ +.
T Consensus 26 ~l~~~-~p~~~~~~~~a~~~~~~~~~~----~~~~~~~~~l~~~la~~~~~---~~~i~~~~gt~al~~~l~~~-~~--- 93 (391)
T 3dr4_A 26 RISVA-APRLDGNERDYVLECMDTTWI----SSVGRFIVEFEKAFADYCGV---KHAIACNNGTTALHLALVAM-GI--- 93 (391)
T ss_dssp --CCC-CCCCCSSHHHHHHHHHHHTCC----SSCSHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHH-TC---
T ss_pred eeccC-CCCCCHHHHHHHHHHHHcCCc----cCCChHHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHc-CC---
Confidence 45555 4 4566666666654221 12467888999999999873 58999999999999999987 11
Q ss_pred cccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCc-c
Q 005009 488 DHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP-E 566 (719)
Q Consensus 488 ~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P-~ 566 (719)
....+|+....+||+....... .|.. ...++.. +
T Consensus 94 ----------------~~gd~vl~~~~~~~~~~~~~~~-~g~~----------------------------~~~~~~~~~ 128 (391)
T 3dr4_A 94 ----------------GPGDEVIVPSLTYIASANSVTY-CGAT----------------------------PVLVDNDPR 128 (391)
T ss_dssp ----------------CTTCEEEEESSSCTHHHHHHHH-TTCE----------------------------EEEECBCTT
T ss_pred ----------------CCcCEEEECCCchHHHHHHHHH-CCCE----------------------------EEEEecCcc
Confidence 1124789999999885443322 2110 0011110 0
Q ss_pred hhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHH
Q 005009 567 WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRIL 646 (719)
Q Consensus 567 ~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~L 646 (719)
.+. -| .+.+++.+. .++.+|++... .|...+ +++|
T Consensus 129 ~~~-----------~d------------------~~~l~~~~~--------~~~~~v~~~n~----tG~~~~----~~~i 163 (391)
T 3dr4_A 129 TFN-----------LD------------------AAKLEALIT--------PRTKAIMPVHL----YGQICD----MDPI 163 (391)
T ss_dssp TCS-----------BC------------------GGGSGGGCC--------TTEEEECCBCG----GGCCCC----HHHH
T ss_pred ccC-----------cC------------------HHHHHHhcC--------CCceEEEEECC----CCChhh----HHHH
Confidence 000 01 122333332 35677775443 345544 8999
Q ss_pred HHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeeh----hccCCCccchheeEeCH-HHHhhh
Q 005009 647 VKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLATN-AVFDSF 711 (719)
Q Consensus 647 r~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg----K~LggG~~Plsavl~~~-~i~~~~ 711 (719)
.++|++||+++|+||+|+ + |..+.....+..+|+++++ |+|++|. .|++++++ ++.+.+
T Consensus 164 ~~l~~~~~~~li~D~a~~-~---g~~~~~~~~~~~~di~~~S~s~~K~l~~g~--gg~~~~~~~~~~~~~ 227 (391)
T 3dr4_A 164 LEVARRHNLLVIEDAAEA-V---GATYRGKKSGSLGDCATFSFFGNAIITTGE--GGMITTNDDDLAAKM 227 (391)
T ss_dssp HHHHHHTTCEEEEECTTC-T---TCEETTEETTSSSSEEEEECBTTSSSCCBS--CEEEEESCHHHHHHH
T ss_pred HHHHHHcCCEEEEECccc-c---cceECCeeecccCCEEEEECCCCCcCCcCC--eEEEEECCHHHHHHH
Confidence 999999999999999996 2 2222223445557999888 9998763 66666654 455443
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=99.08 E-value=3.8e-11 Score=131.35 Aligned_cols=232 Identities=11% Similarity=-0.016 Sum_probs=137.5
Q ss_pred eeeeccccccccCCCCCCCHH---------HHHHHH--HhhhhcccccCCCC-C-ChHHHHHHHHHHhccCCCCCCeEEE
Q 005009 400 QQFDACASWWTQGPDATLQIE---------LARDMG--YTAARFGHVMFPEN-V-YEPALECAELLLQGVGKGWASRAYF 466 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~---------V~~Av~--~q~~~~~~~~~~~~-~-~~~~~~Lae~L~~~~~~~~~~rv~f 466 (719)
+|.|+.+.....+||++ +|. |.+|+. +.+. .... ...+ . ..-..+|.+.|+++++-. .+.+++
T Consensus 17 ~~~~~~~~~~~i~l~~g-~p~~~~~~~~~~v~~a~~~~~~~~-~~~~-~~~Yp~~~~g~~~lr~~ia~~~~~~-~~~i~~ 92 (423)
T 3ez1_A 17 AYEAFKARGLNLNMQRG-QPADADFDLSNGLLTVLGAEDVRM-DGLD-LRNYPGGVAGLPSARALFAGYLDVK-AENVLV 92 (423)
T ss_dssp HHHHHHHHTCCEESCCC-CCCHHHHHTTGGGGGSCCGGGCEE-TTEE-TTSSCSCTTCCHHHHHHHHHHTTSC-GGGEEE
T ss_pred HHHHhhcCCceEecCCC-CCChHhCCCcHHHHHHHhhhHHhh-cchh-hhCCCCCCCChHHHHHHHHHHhCCC-hhhEEE
Confidence 56666666666667666 555 444443 2222 1110 1122 1 222457888888877533 368999
Q ss_pred eCChHHHHH--HHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCC
Q 005009 467 SDNGSTAIE--IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGR 544 (719)
Q Consensus 467 ~~SGsEA~E--~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~ 544 (719)
+++|++|+. .+++... .. ..|. ..+-.....+|+....+||+....... .|.
T Consensus 93 t~G~~~al~~~~~~~~l~-~~--~~g~-------~~~~~~~gd~Vlv~~p~y~~~~~~~~~-~g~--------------- 146 (423)
T 3ez1_A 93 WNNSSLELQGLVLTFALL-HG--VRGS-------TGPWLSQTPKMIVTVPGYDRHFLLLQT-LGF--------------- 146 (423)
T ss_dssp CSSCHHHHHHHHHHHHHH-TC--CTTC-------SSCGGGGCCEEEEEESCCHHHHHHHHH-HTC---------------
T ss_pred eCCcHHHHHHHHHHHHHh-cc--CCCc-------cccccCCCCEEEEcCCCcHHHHHHHHH-cCC---------------
Confidence 999999997 7877662 10 0110 000000025799999999885433222 111
Q ss_pred CcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEE
Q 005009 545 GLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALI 624 (719)
Q Consensus 545 ~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI 624 (719)
..+++|. .+ + .-| .+.+++.+.+ ..++.+|+
T Consensus 147 ---------------~~~~v~~--------------~~-~-----g~d--------~~~l~~~l~~------~~~~~~v~ 177 (423)
T 3ez1_A 147 ---------------ELLTVDM--------------QS-D-----GPD--------VDAVERLAGT------DPSVKGIL 177 (423)
T ss_dssp ---------------EEEEEEE--------------ET-T-----EEC--------HHHHHHHHHS------CTTEEEEE
T ss_pred ---------------EEEeccC--------------CC-C-----CCC--------HHHHHHHHhh------CCCceEEE
Confidence 0111110 00 0 001 3567777752 24688888
Q ss_pred EccccccCCccccCCHHHHHHHHHHH-HhcCCcEEEeccccCccccC-------ccccc----cccCCCcceeeehhccC
Q 005009 625 IEPVVHAAGGMHMVDPLFQRILVKEC-QNRKIPVIFDEVFTGFWRLG-------VETTA----DLLGCVPDIACYGKLLT 692 (719)
Q Consensus 625 vEPViqg~gG~~~pp~~fl~~Lr~Lc-~k~gilLI~DEVqTGfGRtG-------~~~a~----e~~gv~PDIvtlgK~Lg 692 (719)
++|..+...|.+. +.+.+++|.++| ++||+++|+||+++.+...+ .++.. +..+....+.+++|.+.
T Consensus 178 ~~~~~~NPtG~~~-~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~ 256 (423)
T 3ez1_A 178 FVPTYSNPGGETI-SLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKITF 256 (423)
T ss_dssp ECSSSCTTTCCCC-CHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTSC
T ss_pred ECCCCCCCCCcCC-CHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhhcc
Confidence 8875466677765 667799999999 99999999999998432222 22322 12333444669999877
Q ss_pred CCccchheeEeCHHHHhhhc
Q 005009 693 GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 693 gG~~Plsavl~~~~i~~~~~ 712 (719)
+| +++|++++++++++.+.
T Consensus 257 ~G-~r~G~~~~~~~~~~~~~ 275 (423)
T 3ez1_A 257 AG-AGLGFVASSEDNIRWLS 275 (423)
T ss_dssp SS-SSCEEEEECHHHHHHHH
T ss_pred CC-cceEEEEeCHHHHHHHH
Confidence 78 79999999999888764
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=6.3e-10 Score=119.95 Aligned_cols=184 Identities=13% Similarity=0.054 Sum_probs=125.2
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccC
Q 005009 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~ 497 (719)
.|++.+|+.++++...+ ...+...+|.++|+++++. +.+++++||++|++.+++.+ + . +
T Consensus 19 ~~~~~~a~~~~~~~~~~-----~~~~~~~~l~~~la~~~~~---~~~~~~~~gt~al~~~~~~~-~-~--~--------- 77 (393)
T 1mdo_A 19 GAEELAAVKTVLDSGWI-----TTGPKNQELEAAFCRLTGN---QYAVAVSSATAGMHIALMAL-G-I--G--------- 77 (393)
T ss_dssp CHHHHHHHHHHHHHTCC-----SSSHHHHHHHHHHHHHHCC---SEEEEESCHHHHHHHHHHHT-T-C--C---------
T ss_pred CHHHHHHHHHHHhcCCc-----CCChHHHHHHHHHHHHhCC---CcEEEecChHHHHHHHHHHc-C-C--C---------
Confidence 68999999999877432 1346778999999999873 58999999999999999876 2 1 1
Q ss_pred CCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCc-chhhhcccccc
Q 005009 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP-EWLYSKIVEHK 576 (719)
Q Consensus 498 ~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P-~~~~~~~~~~~ 576 (719)
...+|+....+|++.. .++...|.. ...++.. +.+
T Consensus 78 -------~gd~Vl~~~~~~~~~~-~~~~~~g~~----------------------------~~~v~~~~~~~-------- 113 (393)
T 1mdo_A 78 -------EGDEVITPSMTWVSTL-NMIVLLGAN----------------------------PVMVDVDRDTL-------- 113 (393)
T ss_dssp -------TTCEEEEESSSCHHHH-HHHHHTTCE----------------------------EEEECBCTTTC--------
T ss_pred -------CCCEEEeCCCccHhHH-HHHHHCCCE----------------------------EEEEeccCCcC--------
Confidence 1247888888888843 333322211 0011110 000
Q ss_pred cccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCc
Q 005009 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656 (719)
Q Consensus 577 ~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gil 656 (719)
..| .+.+++.+. .++.+|++.+. .| ...+ +++|.++|++||++
T Consensus 114 ---~~d------------------~~~l~~~l~--------~~~~~v~~~~~-~G---~~~~----~~~i~~l~~~~~~~ 156 (393)
T 1mdo_A 114 ---MVT------------------PEHIEAAIT--------PQTKAIIPVHY-AG---APAD----LDAIYALGERYGIP 156 (393)
T ss_dssp ---CBC------------------HHHHHHHCC--------TTEEEECCBCG-GG---CCCC----HHHHHHHHHHHTCC
T ss_pred ---CCC------------------HHHHHHhcC--------CCceEEEEeCC-CC---CcCC----HHHHHHHHHHcCCe
Confidence 011 245666664 25788888875 44 4443 89999999999999
Q ss_pred EEEecccc-CccccCccccccccCCCcceeeeh----hccCCCccchheeEeC-HHHHhhh
Q 005009 657 VIFDEVFT-GFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLAT-NAVFDSF 711 (719)
Q Consensus 657 LI~DEVqT-GfGRtG~~~a~e~~gv~PDIvtlg----K~LggG~~Plsavl~~-~~i~~~~ 711 (719)
+|+||+|+ |+...|+. ++. +|+++++ |.++|| .+|+++++ +++++.+
T Consensus 157 li~D~a~~~g~~~~~~~-----~~~-~d~~~~S~~k~K~l~~~--~~g~~~~~~~~~~~~l 209 (393)
T 1mdo_A 157 VIEDAAHATGTSYKGRH-----IGA-RGTAIFSFHAIKNITCA--EGGIVVTDNPQFADKL 209 (393)
T ss_dssp BCEECTTCTTCEETTEE-----TTS-SSEEEEECCTTSSSCSS--SCEEEEESCHHHHHHH
T ss_pred EEEECccccCCeECCee-----cCC-CCeEEEeCCCCCccccc--cceEEEeCCHHHHHHH
Confidence 99999998 54444543 233 8999887 999887 36778886 7777655
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=5.9e-10 Score=122.02 Aligned_cols=222 Identities=10% Similarity=0.024 Sum_probs=125.1
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCC-----CChHHHHHHHHHHhccCCCCCCeEEEeCChHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPEN-----VYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~-----~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~ 474 (719)
.|||..+. ++. +|++++|+.+++..........+ ..+...++.++|+++++.+ .+.++|+++|+||+
T Consensus 20 ~~Ld~~~~------~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~t~a~ 91 (432)
T 3a9z_A 20 VYMDYNAT------TPL-EPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGK-PQDIIFTSGGTESN 91 (432)
T ss_dssp EECBTTTC------CCC-CHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCC-GGGEEEESCHHHHH
T ss_pred EEeeCCcc------CCC-CHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCC-cCeEEEeCChHHHH
Confidence 78887653 377 99999999999876321111111 1123468888999887743 35899999999999
Q ss_pred HHHHHHHHHHhhc---cccccccccCCCccccCcceEEEEEeCCcccCc-cccccccCCCCCCCCCCCCCccCCCcccCC
Q 005009 475 EIALKMAFRKFSF---DHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT-LGAMEAQAPSPYTGFLQQPWYSGRGLFLDP 550 (719)
Q Consensus 475 E~AlKlA~r~~~~---~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t-~galslt~~~~~~~~~~~~~~~~~~~~~~~ 550 (719)
+.+++.+.+.+.. +.| .+|++...+||+.. ..+...++.+.. .+|.. +.
T Consensus 92 ~~~~~~~~~~~~~~~~~~g----------------d~vl~~~p~y~~~~~i~~~~~~h~s~~-----~~~~~----~~-- 144 (432)
T 3a9z_A 92 NLVIHSTVRCFHEQQTLQG----------------RTVDQISPEEGTRPHFITCTVEHDSIR-----LPLEH----LV-- 144 (432)
T ss_dssp HHHHHHHHHHHHHHHHHC----------------------------CCCEEEEETTCCHHHH-----HHHHH----HH--
T ss_pred HHHHHHHHhhhhhccccCC----------------ccccccccccccCCeEEEecCcchhHH-----HHHHH----HH--
Confidence 9999988433321 122 37889999999852 222111111100 00000 00
Q ss_pred CcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc
Q 005009 551 PTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630 (719)
Q Consensus 551 p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViq 630 (719)
...|...+.+| ....+. .-| .+.|++.+. .++.+|++++. +
T Consensus 145 ----~~~g~~v~~v~--------------~~~~~~----~~d--------~~~l~~~i~--------~~~~~v~~~~~-~ 185 (432)
T 3a9z_A 145 ----EDQVAEVTFVP--------------VSKVNG----QVE--------VEDILAAVR--------PTTCLVTIMLA-N 185 (432)
T ss_dssp ----HTTSCEEEEEC--------------CCTTTS----SCC--------HHHHHHTCC--------TTEEEEECCSB-C
T ss_pred ----HhcCcEEEEEe--------------cCcccC----CcC--------HHHHHHhcc--------CCceEEEEECc-c
Confidence 00011111111 000000 001 245555543 35789999997 8
Q ss_pred cCCccccCCHHHHHHHHHHHHhcC----------CcEEEeccccCccccCccccccccCCCcceeee--hhccCCCccch
Q 005009 631 AAGGMHMVDPLFQRILVKECQNRK----------IPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPL 698 (719)
Q Consensus 631 g~gG~~~pp~~fl~~Lr~Lc~k~g----------ilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtl--gK~LggG~~Pl 698 (719)
...|.+.+ +++|.++|++|| +++|+||++ ++|++. +... ...+|++++ +|.+ | ..+
T Consensus 186 nptG~~~~----~~~i~~l~~~~~~~~~~~~~~~~~livDea~-~~~~~~--~~~~--~~~~d~~~~s~~K~~--g-~~~ 253 (432)
T 3a9z_A 186 NETGVIMP----ISEISRRIKALNQIRAASGLPRVLVHTDAAQ-ALGKRR--VDVE--DLGVDFLTIVGHKFY--G-PRI 253 (432)
T ss_dssp TTTCBBCC----HHHHHHHHHHHHHHHHHHTCCCCEEEEECTT-TTTTSC--CCHH--HHCCSEEEEEGGGTT--C-CSC
T ss_pred cCcccccC----HHHHHHHHHhcCcccccccCCceEEEEEchh-hhCCcc--cChh--hcCCCEEEEehhHhc--C-Ccc
Confidence 88999887 789999999999 999999999 566542 2221 235888865 9976 3 248
Q ss_pred heeEeCHHH
Q 005009 699 AATLATNAV 707 (719)
Q Consensus 699 savl~~~~i 707 (719)
|++++++++
T Consensus 254 G~~~~~~~~ 262 (432)
T 3a9z_A 254 GALYVRGVG 262 (432)
T ss_dssp EEEEETTBT
T ss_pred eEEEEcccc
Confidence 899999875
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.07 E-value=7.6e-10 Score=119.64 Aligned_cols=92 Identities=5% Similarity=-0.105 Sum_probs=62.8
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC-
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC- 680 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv- 680 (719)
+.+++.+.+ .++++|++.|... |... .+++|+++|++||++||+||+|+ +|+++.... ..++
T Consensus 153 ~~l~~~i~~-------~~~~~v~~~~~~~---~~~~----~l~~i~~l~~~~~~~li~Dea~~-~g~~~~~~~--~~~~~ 215 (405)
T 2vi8_A 153 DDVREKARL-------HRPKLIVAAAAAY---PRII----DFAKFREIADEVGAYLMVDMAHI-AGLVAAGLH--PNPVP 215 (405)
T ss_dssp HHHHHHHHH-------HCCSEEEECCSSC---CSCC----CHHHHHHHHHHHTCEEEEECTTT-HHHHHTTSS--CCSTT
T ss_pred HHHHHHHHh-------cCCeEEEEeCCCC---CccC----CHHHHHHHHHHcCCEEEEEcccc-ccccccCcC--CCccc
Confidence 456666652 1245677754323 3222 28999999999999999999998 666654211 1222
Q ss_pred Cccee--eehhccCCCccchheeEeCHHHHhhhc
Q 005009 681 VPDIA--CYGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 681 ~PDIv--tlgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
.+|++ +++|.++|+. . |++++++++++.+.
T Consensus 216 ~~di~~~s~sK~~~g~~-g-G~~~~~~~~~~~l~ 247 (405)
T 2vi8_A 216 YAHFVTTTTHKTLRGPR-G-GMILCQEQFAKQID 247 (405)
T ss_dssp TCSEEEEESSSTTCCCS-C-EEEEECHHHHHHHH
T ss_pred cCCEEEEeccccCCCCC-C-eEEEEcHHHHHHHH
Confidence 58987 7899998652 3 88999988887653
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=2.8e-10 Score=126.61 Aligned_cols=223 Identities=13% Similarity=0.054 Sum_probs=143.5
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhccccc----CC--CCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FP--ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTA 473 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~----~~--~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA 473 (719)
.|||. +++|+. ++.+.+++.++++.+.... +. ....+...++.++|+++.+.. .+.++|++++++|
T Consensus 69 iyld~------~~~g~~-p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v~~t~g~t~a 140 (465)
T 3e9k_A 69 IYFLG------NSLGLQ-PKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGAN-EKEIALMNALTVN 140 (465)
T ss_dssp EECBT------TTSCCE-ETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCC-GGGEEECSCHHHH
T ss_pred EEecC------CccCCC-hHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCC-cCCEEEECCHHHH
Confidence 68884 468998 8999999998887654221 10 012234466788888877743 3689999999999
Q ss_pred HHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcc
Q 005009 474 IEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTV 553 (719)
Q Consensus 474 ~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~ 553 (719)
+..+++... +.| ..+.+||+...+||+......+..... + ..+. ..
T Consensus 141 l~~~~~~~~-----~~~-------------~~~~~Vl~~~~~~~s~~~~~~~~~~~~---G---------~~~~----~~ 186 (465)
T 3e9k_A 141 LHLLMLSFF-----KPT-------------PKRYKILLEAKAFPSDHYAIESQLQLH---G---------LNIE----ES 186 (465)
T ss_dssp HHHHHHHHC-----CCC-------------SSSCEEEEETTCCHHHHHHHHHHHHHT---T---------CCHH----HH
T ss_pred HHHHHHHhc-----ccc-------------CCCCEEEEcCCcCCchHHHHHHHHHHc---C---------Ccce----ee
Confidence 999998772 111 335689999999998655433221100 0 0000 00
Q ss_pred cccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC
Q 005009 554 FMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG 633 (719)
Q Consensus 554 ~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~g 633 (719)
.....+.++.+. -| .+.+++.+++ +.+++++|+++.+ +...
T Consensus 187 ----~v~~~~~~~~~~-----------~d------------------~~~l~~~i~~-----~~~~~~lv~~~~~-~n~t 227 (465)
T 3e9k_A 187 ----MRMIKPREGEET-----------LR------------------IEDILEVIEK-----EGDSIAVILFSGV-HFYT 227 (465)
T ss_dssp ----EEEECCCTTCSS-----------CC------------------HHHHHHHHHH-----HGGGEEEEEEESB-CTTT
T ss_pred ----eEEEecCCCCCc-----------cC------------------HHHHHHHHHh-----cCCCeEEEEEeCc-ccCc
Confidence 000011111000 01 2566777763 2247899999998 9999
Q ss_pred ccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceee--ehhccCCCccchheeEeCHHHHhhh
Q 005009 634 GMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 634 G~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvt--lgK~LggG~~Plsavl~~~~i~~~~ 711 (719)
|.+.+ +++|.++|++||+++|+|++|+ +|... +....+ ..|+++ +.|.+.||...+|++.+++++.+.+
T Consensus 228 G~~~~----l~~i~~la~~~g~~vi~D~a~~-~g~~~--~~~~~~--~~D~~~~s~~K~l~~gp~~~g~l~~~~~~~~~~ 298 (465)
T 3e9k_A 228 GQHFN----IPAITKAGQAKGCYVGFDLAHA-VGNVE--LYLHDW--GVDFACWCSYKYLNAGAGGIAGAFIHEKHAHTI 298 (465)
T ss_dssp CBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTSC--CCHHHH--TCCEEEECSSSTTCCCTTCCCEEEECGGGTTTS
T ss_pred ceeec----HHHHHHHHHHcCCEEEEEhhhh-cCCcC--Cchhhc--CCCEEEECcccccccCCCceEEEEEcHHHHhhc
Confidence 99987 8999999999999999999996 33221 222223 357764 6699976645689999999987665
Q ss_pred c
Q 005009 712 V 712 (719)
Q Consensus 712 ~ 712 (719)
.
T Consensus 299 ~ 299 (465)
T 3e9k_A 299 K 299 (465)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.05 E-value=2.6e-10 Score=123.05 Aligned_cols=212 Identities=13% Similarity=0.002 Sum_probs=127.8
Q ss_pred EEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCC-----CCCChHHHHHHHHHHhccCCCCCCe
Q 005009 389 VYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFP-----ENVYEPALECAELLLQGVGKGWASR 463 (719)
Q Consensus 389 l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~-----~~~~~~~~~Lae~L~~~~~~~~~~r 463 (719)
..+.++. .|||+.+ .+.. +|++.+|+.+++.+....... ....+...++.++|++..+.. .+.
T Consensus 15 ~~~~~~~----iyld~~~------~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~-~~~ 82 (400)
T 3vax_A 15 VPRGSHM----TYLDAAA------TTRV-DQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAE-PDE 82 (400)
T ss_dssp -----------CCCCCCC------CSSS-CHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCC-GGG
T ss_pred CcccCCc----EEecCCC------CCCC-CHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCC-CCc
Confidence 3444555 7999765 2467 999999999998753111000 011344678888999888743 358
Q ss_pred EEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcce-EEEEEeCCcccCccccccccCCCCCCCCCCCCCcc
Q 005009 464 AYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIEL-KVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYS 542 (719)
Q Consensus 464 v~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~-kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~ 542 (719)
++|+++|++|++.+++.+. .+..+. .. .||.....|++.. .++...... +.
T Consensus 83 v~~~~g~t~al~~~~~~l~-~~~~~~----------------gd~~Vl~~~~~~~~~~-~~~~~~~~~---g~------- 134 (400)
T 3vax_A 83 LIFTSGATESNNIALLGLA-PYGERT----------------GRRHIITSAIEHKAVL-EPLEHLAGR---GF------- 134 (400)
T ss_dssp EEEESCHHHHHHHHHHTTH-HHHHHH----------------TCCEEEEETTSCHHHH-HHHHHHHTT---TC-------
T ss_pred EEEeCCHHHHHHHHHHHHH-HhhccC----------------CCCEEEECccccHhHH-HHHHHHHhc---CC-------
Confidence 9999999999999999873 232221 13 5666666555532 222211000 00
Q ss_pred CCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEE
Q 005009 543 GRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGA 622 (719)
Q Consensus 543 ~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAA 622 (719)
....++....+ ..| .+.+++.+. .+..+
T Consensus 135 ---------------~~~~v~~~~~~-----------~~d------------------~~~l~~~i~--------~~~~~ 162 (400)
T 3vax_A 135 ---------------EVDFLTPGPSG-----------RIS------------------VEGVMERLR--------PDTLL 162 (400)
T ss_dssp ---------------EEEEECCCTTC-----------CCC------------------HHHHHTTCC--------TTEEE
T ss_pred ---------------eEEEEccCCCC-----------CcC------------------HHHHHHhcC--------CCceE
Confidence 00111111000 001 244555443 36789
Q ss_pred EEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeeh--hccCCCccchhe
Q 005009 623 LIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAA 700 (719)
Q Consensus 623 vIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~LggG~~Plsa 700 (719)
|++++. ++..|.+.+ +++|.++|++||+++|+||+++ +|... ....+. +|+++++ | +.|+ .++|+
T Consensus 163 v~~~~~-~nptG~~~~----l~~i~~la~~~~~~li~D~a~~-~~~~~----~~~~~~-~d~~~~s~~K-~~g~-~g~g~ 229 (400)
T 3vax_A 163 VSLMHV-NNETGVIQP----VAELAQQLRATPTYLHVDAAQG-YGKVP----GDLTTP-IDMISISGHK-IGAP-KGVGA 229 (400)
T ss_dssp EECCSB-CTTTCBBCC----HHHHHHHHTTSSCEEEEECTTT-TTTSG----GGGGSC-CSEEEEETGG-GTSC-SSCEE
T ss_pred EEEECC-CCCceeeCc----HHHHHHHHHhcCCEEEEEhhhh-cCCCC----cChhhc-CcEEEEeHHH-hCCC-CceEE
Confidence 999997 999998887 8999999999999999999996 43321 122234 8998766 9 5443 35788
Q ss_pred eE-eCH
Q 005009 701 TL-ATN 705 (719)
Q Consensus 701 vl-~~~ 705 (719)
++ +++
T Consensus 230 ~~~~~~ 235 (400)
T 3vax_A 230 LVTRRR 235 (400)
T ss_dssp EEECBC
T ss_pred EEEecc
Confidence 88 776
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.2e-09 Score=118.81 Aligned_cols=191 Identities=12% Similarity=0.053 Sum_probs=125.0
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccC
Q 005009 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~ 497 (719)
.|++.+++.+.++.. +.. ...+...+|.++|+++++ .+.++|++||++|++.+++.+ + ..
T Consensus 11 ~~~v~~a~~~~~~~~-~~~---~~g~~~~~l~~~la~~~~---~~~v~~~~ggt~al~~~~~~l-~---~~--------- 70 (394)
T 1o69_A 11 GGNELKYIEEVFKSN-YIA---PLGEFVNRFEQSVKDYSK---SENALALNSATAALHLALRVA-G---VK--------- 70 (394)
T ss_dssp -CCHHHHHHHHHHHT-TTS---CTTHHHHHHHHHHHHHHC---CSEEEEESCHHHHHHHHHHHT-T---CC---------
T ss_pred CHHHHHHHHHHHHcC-Ccc---CCChHHHHHHHHHHHHhC---CCcEEEeCCHHHHHHHHHHHc-C---CC---------
Confidence 467888888877652 211 113557889999999887 378999999999999999986 1 01
Q ss_pred CCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhccccccc
Q 005009 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKD 577 (719)
Q Consensus 498 ~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~ 577 (719)
...+|+....+||+...... ..|.. ...++..+.+
T Consensus 71 -------~gd~Vl~~~~~~~~~~~~~~-~~g~~----------------------------~~~v~~~~~~--------- 105 (394)
T 1o69_A 71 -------QDDIVLASSFTFIASVAPIC-YLKAK----------------------------PVFIDCDETY--------- 105 (394)
T ss_dssp -------TTCEEEEESSSCGGGTHHHH-HTTCE----------------------------EEEECBCTTS---------
T ss_pred -------CCCEEEECCCccHHHHHHHH-HcCCE----------------------------EEEEEeCCCC---------
Confidence 12478999999888543322 22110 0011111000
Q ss_pred ccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcE
Q 005009 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (719)
Q Consensus 578 ~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilL 657 (719)
..| .+.+++.+.+ .++++.+|++++. .| .. ..+++|.++|++||+++
T Consensus 106 --~~d------------------~~~l~~~i~~-----~~~~~~~v~~~~~-~G---~~----~~l~~i~~l~~~~~~~l 152 (394)
T 1o69_A 106 --NID------------------VDLLKLAIKE-----CEKKPKALILTHL-YG---NA----AKMDEIVEICKENDIVL 152 (394)
T ss_dssp --SBC------------------HHHHHHHHHH-----CSSCCCEEEEECG-GG---CC----CCHHHHHHHHHHTTCEE
T ss_pred --CcC------------------HHHHHHHHhc-----ccCCceEEEEECC-CC---Ch----hhHHHHHHHHHHcCCEE
Confidence 001 2556677763 1235678888885 55 33 34999999999999999
Q ss_pred EEecccc-CccccCccccccccCCCcceeee--hhccCCCccchheeEeC-HHHHhhh
Q 005009 658 IFDEVFT-GFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLAT-NAVFDSF 711 (719)
Q Consensus 658 I~DEVqT-GfGRtG~~~a~e~~gv~PDIvtl--gK~LggG~~Plsavl~~-~~i~~~~ 711 (719)
|+||+|+ |+...|..+.. ++ ..|+.++ +|+++++ -+|+++++ +++++.+
T Consensus 153 i~Dea~~~g~~~~~~~~~~--~~-~~~~~s~s~~K~l~~~--~~G~~~~~~~~l~~~l 205 (394)
T 1o69_A 153 IEDAAEALGSFYKNKALGT--FG-EFGVYSYNGNKIITTS--GGGMLIGKNKEKIEKA 205 (394)
T ss_dssp EEECTTCTTCEETTEETTS--SS-SEEEEECCTTSSSCCS--SCEEEEESCHHHHHHH
T ss_pred EEECcCcccceeCCccccc--cc-CcEEEEEeCCccCCCC--CceEEEECCHHHHHHH
Confidence 9999998 77665643211 11 4788888 7999865 37889995 7877665
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=3.1e-10 Score=122.32 Aligned_cols=193 Identities=12% Similarity=0.069 Sum_probs=126.4
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCC-eEEEeCChHHHHHHHHHHHHHHhhcccccccccc
Q 005009 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWAS-RAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~-rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~ 496 (719)
+|++.+|+.+++.. +.. ........++.++|++.++.. .+ .++++++|++|++.+++.+. ..
T Consensus 30 ~~~v~~a~~~~~~~--~~~--~~~~~~~~~l~~~la~~~~~~-~~~~v~~~~g~t~al~~~~~~~~-----~~------- 92 (396)
T 2ch1_A 30 SKRVLTAMTNTVLS--NFH--AELFRTMDEVKDGLRYIFQTE-NRATMCVSGSAHAGMEAMLSNLL-----EE------- 92 (396)
T ss_dssp CHHHHHHTTSCCCC--TTC--HHHHHHHHHHHHHHHHHHTCC-CSCEEEESSCHHHHHHHHHHHHC-----CT-------
T ss_pred CHHHHHHhcccccc--CCC--hhHHHHHHHHHHHHHHHhCCC-CCcEEEECCcHHHHHHHHHHHhc-----CC-------
Confidence 78999988876532 100 011234678889999988753 24 79999999999999999872 11
Q ss_pred CCCccccCcceEEEEEeCCcccCcc-ccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhccccc
Q 005009 497 GKDTTEKCIELKVLALKGSYHGDTL-GAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEH 575 (719)
Q Consensus 497 ~~~~~~~~~r~kII~~~~syHG~t~-galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~ 575 (719)
..+|+....+||+... ......|.. ...++.+..+
T Consensus 93 ---------gd~vl~~~~~~~~~~~~~~~~~~g~~----------------------------~~~v~~~~~~------- 128 (396)
T 2ch1_A 93 ---------GDRVLIAVNGIWAERAVEMSERYGAD----------------------------VRTIEGPPDR------- 128 (396)
T ss_dssp ---------TCEEEEEESSHHHHHHHHHHHHTTCE----------------------------EEEEECCTTS-------
T ss_pred ---------CCeEEEEcCCcccHHHHHHHHHcCCc----------------------------eEEecCCCCC-------
Confidence 2479999999998421 111111110 0111111110
Q ss_pred ccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCC
Q 005009 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655 (719)
Q Consensus 576 ~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gi 655 (719)
..| .+.+++.+.+ .++.+|+++.. +...|.+.+ +++|.++|++||+
T Consensus 129 ----~~d------------------~~~l~~~l~~-------~~~~~v~~~~~-~nptG~~~~----~~~i~~l~~~~~~ 174 (396)
T 2ch1_A 129 ----PFS------------------LETLARAIEL-------HQPKCLFLTHG-DSSSGLLQP----LEGVGQICHQHDC 174 (396)
T ss_dssp ----CCC------------------HHHHHHHHHH-------HCCSEEEEESE-ETTTTEECC----CTTHHHHHHHTTC
T ss_pred ----CCC------------------HHHHHHHHHh-------CCCCEEEEECC-CCCCceecC----HHHHHHHHHHcCC
Confidence 011 2456666652 13567888876 788898877 8999999999999
Q ss_pred cEEEeccccCccccCccccccccCCCcceeeeh--hccCCCccchheeEeCHHHHhhh
Q 005009 656 PVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 656 lLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~LggG~~Plsavl~~~~i~~~~ 711 (719)
++|+||+++ +|... +..+. ..+|+++.+ |.++++ ..+|++++++++++.+
T Consensus 175 ~li~Dea~~-~g~~~--~~~~~--~~~d~~~~s~~K~~~~~-~g~g~~~~~~~~~~~~ 226 (396)
T 2ch1_A 175 LLIVDAVAS-LCGVP--FYMDK--WEIDAVYTGAQKVLGAP-PGITPISISPKALDVI 226 (396)
T ss_dssp EEEEECTTT-BTTBC--CCTTT--TTCCEEECCCC-CCCCC-SSCEEEEECHHHHHHH
T ss_pred EEEEEcccc-ccCCc--cchhh--cCcCEEEEcCCccccCC-CCeEEEEECHHHHHhh
Confidence 999999996 65432 22222 347988766 999886 5678999999888765
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.02 E-value=3.9e-10 Score=120.06 Aligned_cols=195 Identities=15% Similarity=0.007 Sum_probs=117.0
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccC
Q 005009 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~ 497 (719)
||+|.+|+++++....+ ...+...+|.++|++..+. +..+|++||++|++.|++.+. ..
T Consensus 28 ~p~v~~ai~~~~~~~~~-----~~~~~~~~l~~~la~~~~~---~~~i~~~~g~~a~~~a~~~~~-~~------------ 86 (359)
T 3pj0_A 28 LTEALQNIDDNLESDIY-----GNGAVIEDFETKIAKILGK---QSAVFFPSGTMAQQIALRIWA-DR------------ 86 (359)
T ss_dssp HHHHTTTSCTTCBCCBT-----TBSHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHHHHH-HH------------
T ss_pred CHHHHHHHHhhcccCcc-----cCCHHHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHHH-hc------------
Confidence 46677776664432221 2356778999999998873 556778999999999999873 21
Q ss_pred CCccccCcceEEEEEeCCcccCcccc--c-cccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccc
Q 005009 498 KDTTEKCIELKVLALKGSYHGDTLGA--M-EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVE 574 (719)
Q Consensus 498 ~~~~~~~~r~kII~~~~syHG~t~ga--l-slt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~ 574 (719)
+...+|.....+|...... + ...|. ..+++|...
T Consensus 87 -------g~~~vvi~~~~~~~~~~~~~~~~~~~g~------------------------------~~~~v~~~~------ 123 (359)
T 3pj0_A 87 -------KENRRVAYHPLSHLEIHEQDGLKELQQI------------------------------TPLLLGTAN------ 123 (359)
T ss_dssp -------HTCCEEEECTTCHHHHSSTTHHHHHHCC------------------------------EEEECSCTT------
T ss_pred -------CCCcEEEEeccceeeehhcchHHHhcCc------------------------------eEEecCCcC------
Confidence 1123666666666533221 1 11111 011111000
Q ss_pred cccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcC
Q 005009 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK 654 (719)
Q Consensus 575 ~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~g 654 (719)
+ .-| .+.+++. .+++++|++++. +...|-.+.|.+++++|.++|++||
T Consensus 124 -----~---------~~d--------~~~l~~~---------~~~~~~v~~~~p-~n~~~G~~~~~~~l~~l~~~~~~~~ 171 (359)
T 3pj0_A 124 -----Q---------LLT--------IDDIKSL---------REPVSSVLIELP-QREIGGQLPAFEELEKISEYCHEQG 171 (359)
T ss_dssp -----S---------CCC--------HHHHHTC---------SSCCSEEEEESS-BGGGTSBCCCHHHHHHHHHHHHHHT
T ss_pred -----C---------CcC--------HHHHHhc---------cCCceEEEEEec-ccCCCcccCCHHHHHHHHHHHHHcC
Confidence 0 001 1334322 246789999986 6554335568999999999999999
Q ss_pred CcEEEeccccCcc--ccCccccccccCCCccee--eehhccCCCccchheeEeCHHHHhhhc
Q 005009 655 IPVIFDEVFTGFW--RLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 655 ilLI~DEVqTGfG--RtG~~~a~e~~gv~PDIv--tlgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
++||+||++..+. ..|.. ...+.-..|++ +++|+++++ .. +.+++++++++.+.
T Consensus 172 ~~li~D~a~~~~~~~~~~~~--~~~~~~~~d~~~~s~sK~~~~~-~g-g~~~~~~~l~~~~~ 229 (359)
T 3pj0_A 172 ISLHLDGARLWEITPFYQKS--AEEICALFDSVYVSFYKGIGGI-AG-AILAGNDDFVQEAK 229 (359)
T ss_dssp CEEEEEETTCGGGHHHHTCC--HHHHHTTCSEEEEESSSTTCCS-SC-EEEEECHHHHHHHH
T ss_pred CEEEEECcchhcchhhhCCC--HHHhhccCCEEEEeccccCCCc-ce-EEEECCHHHHHHHH
Confidence 9999999885221 11111 11111234766 889999865 22 56788998887764
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.5e-09 Score=117.41 Aligned_cols=189 Identities=10% Similarity=0.040 Sum_probs=122.7
Q ss_pred ChHHHHHHHHHHhccCCCC--------CCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEe
Q 005009 442 YEPALECAELLLQGVGKGW--------ASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALK 513 (719)
Q Consensus 442 ~~~~~~Lae~L~~~~~~~~--------~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~ 513 (719)
.+....+++.+.+..+... .+.++++++|++|++.+++... .. ..+|+...
T Consensus 81 ~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~-----~~----------------gd~Vlv~~ 139 (425)
T 2r2n_A 81 PELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMII-----NP----------------GDNVLLDE 139 (425)
T ss_dssp HHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHC-----CT----------------TCEEEEES
T ss_pred HHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhC-----CC----------------CCEEEEeC
Confidence 3455666777665444321 1489999999999999999871 11 24799999
Q ss_pred CCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCc
Q 005009 514 GSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDS 593 (719)
Q Consensus 514 ~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~ 593 (719)
.+||+....+ ...|. ..+++|. .. + .-|
T Consensus 140 p~y~~~~~~~-~~~g~------------------------------~~~~v~~--------------~~-~-----~~d- 167 (425)
T 2r2n_A 140 PAYSGTLQSL-HPLGC------------------------------NIINVAS--------------DE-S-----GIV- 167 (425)
T ss_dssp SCCHHHHHHH-GGGTC------------------------------EEEEECE--------------ET-T-----EEC-
T ss_pred CCcHHHHHHH-HHcCC------------------------------EEEEeCc--------------CC-C-----CCC-
Confidence 9999854332 22211 0111110 00 0 001
Q ss_pred hhHHHHHHHHHHHHHhcCCCC----CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCcccc
Q 005009 594 SDLASIYSSYISQNLLQNPGL----KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRL 669 (719)
Q Consensus 594 ~~~~~~~~~~le~~l~~~~~~----~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRt 669 (719)
.+.+++.+.+.... ....++.+|++.|..+.-.|.+ .|.+.+++|.++|++||+++|+||++++|...
T Consensus 168 -------~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~-~~~~~l~~l~~~a~~~~~~li~De~~~~~~~~ 239 (425)
T 2r2n_A 168 -------PDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNS-LTSERKKEIYELARKYDFLIIEDDPYYFLQFN 239 (425)
T ss_dssp -------HHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTGGGBSS
T ss_pred -------HHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCc-CCHHHHHHHHHHHHHcCCEEEEECCcccccCC
Confidence 25577777521000 0113567888876436667765 57899999999999999999999999988666
Q ss_pred Cc----cccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhc
Q 005009 670 GV----ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 670 G~----~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
|. +...+..+....+.+++|.++.| +++|++++++++++.+.
T Consensus 240 g~~~~~~~~~~~~~~~i~~~s~SK~~~~G-lRiG~~~~~~~l~~~l~ 285 (425)
T 2r2n_A 240 KFRVPTFLSMDVDGRVIRADSFSKIISSG-LRIGFLTGPKPLIERVI 285 (425)
T ss_dssp SSCCCCTGGGCTTSCEEEEEESTTTTCST-TCCEEEEEEHHHHHHHH
T ss_pred CCCCCCccccCCCCCEEEEccchhhccCc-cceEEEecCHHHHHHHH
Confidence 65 23333333345566899999988 79999999999888764
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=99.00 E-value=7.2e-10 Score=126.31 Aligned_cols=225 Identities=13% Similarity=0.029 Sum_probs=136.1
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCC--C--CCCeEEEeCChHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGK--G--WASRAYFSDNGSTAIE 475 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~--~--~~~rv~f~~SGsEA~E 475 (719)
+|++.+..++....++. +|++++++.+++....+........+....+++.+.+..+. . .-+.++++++|++|+.
T Consensus 100 ~~~~~~i~l~~g~~~~~-~~~~v~a~~~~~~~~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~ 178 (533)
T 3f6t_A 100 KFLIDAVNYCHTELGLN-RDKVVAEWVNGAVANNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIV 178 (533)
T ss_dssp HHHHHHHHHHHHTTCCC-HHHHHHHHHHHHHTCSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHH
T ss_pred cccHhheeccCCCCCcC-CcHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHH
Confidence 44444444445577888 99999999998876444322233455666777777544121 0 0158999999999999
Q ss_pred HHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccc
Q 005009 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (719)
Q Consensus 476 ~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (719)
.+++.......-.. ...|++..-+|++..... ...+..
T Consensus 179 ~~~~~l~~~~l~~~----------------gd~Viv~~p~~~~~~~~~-~~~g~~------------------------- 216 (533)
T 3f6t_A 179 YAFHSLAENHLLKK----------------GDKIAINEPIFTPYLRIP-ELKDYE------------------------- 216 (533)
T ss_dssp HHHHHHHHTTSSCT----------------TCEEEEESSCCHHHHTSG-GGGGSE-------------------------
T ss_pred HHHHHhhhhhccCC----------------cCEEEEcCCCcHHHHHHH-HHcCCe-------------------------
Confidence 99996311111111 247888888887743322 221110
Q ss_pred cCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCcc
Q 005009 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (719)
Q Consensus 556 ~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~ 635 (719)
...++.+.... ++ + .-| .+.+++.+. .++.+|++... +...|.
T Consensus 217 ---~~~v~~~~~~~-----------~~----~--~~d--------~~~l~~~l~--------~~~k~v~l~~p-~NPtG~ 259 (533)
T 3f6t_A 217 ---LVEVDLHSYEK-----------ND----W--EIE--------PNEIEKLKD--------PSIKALIVVNP-TNPTSK 259 (533)
T ss_dssp ---EEEECCCEETT-----------TT----S--EEC--------HHHHHHHSC--------TTEEEEEEESS-CTTTCB
T ss_pred ---EEEEEecCCcc-----------cC----C--CCC--------HHHHHHHhC--------CCCeEEEEeCC-CCCCcc
Confidence 01111110000 00 0 001 245666553 25566666443 566676
Q ss_pred ccCCHHHHHHHHHHHH-hcCCcEEEeccccCccccCccccccccCCCcceeeehhccC-CCccchheeEeCHH
Q 005009 636 HMVDPLFQRILVKECQ-NRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT-GGVIPLAATLATNA 706 (719)
Q Consensus 636 ~~pp~~fl~~Lr~Lc~-k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lg-gG~~Plsavl~~~~ 706 (719)
+. +.+.+++|.++|+ +||+++|+||++.+|...+........+....+.+++|.+| .| +++|+++++++
T Consensus 260 ~~-~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~RiG~l~~~~~ 330 (533)
T 3f6t_A 260 EF-DTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVYSYSKLFGCTG-WRLGVIALNEK 330 (533)
T ss_dssp CC-CHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHHSGGGEEEEEESHHHHTCGG-GCEEEEEEESS
T ss_pred cc-CHHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhhcCCCCEEEEecCcccCCCcc-cceEEEEECcH
Confidence 54 7888999999999 69999999999998866444333222233455668999998 68 79999999877
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=2.4e-09 Score=119.51 Aligned_cols=172 Identities=12% Similarity=0.044 Sum_probs=118.1
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
+.++...+|.++|+++.+. +..++++||++|+..+++... +.| ..||+....||+
T Consensus 111 ~~~~~~~~l~~~lA~l~g~---~~~v~~~sG~~Ai~~al~~l~-----~~G----------------d~Vi~~~~~y~~- 165 (445)
T 1qgn_A 111 YGNPTTVVLEEKISALEGA---ESTLLMASGMCASTVMLLALV-----PAG----------------GHIVTTTDCYRK- 165 (445)
T ss_dssp GCCHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHHHHS-----CSS----------------CEEEEETTSCHH-
T ss_pred CCChHHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHHh-----CCC----------------CEEEEcCCCchh-
Confidence 3567888999999998873 478889999999999998651 111 378888887776
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
+...+... .. . . |.....+| .+|
T Consensus 166 ~~~~~~~~-~~---~---------~-------------G~~v~~v~--------------~~d----------------- 188 (445)
T 1qgn_A 166 TRIFIETI-LP---K---------M-------------GITATVID--------------PAD----------------- 188 (445)
T ss_dssp HHHHHHHT-GG---G---------G-------------TCEEEEEC--------------SSC-----------------
T ss_pred HHHHHHHH-HH---H---------c-------------CCEEEEeC--------------CCC-----------------
Confidence 33322100 00 0 0 00000111 111
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccC
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~g 679 (719)
.+.+++.+.+ ..+.+|++|+. ++..|.+.+ +++|.++|++||++||+||+|+.+ .. ...+.
T Consensus 189 -~~~l~~ai~~-------~tv~lV~le~p-~NptG~v~d----l~~I~~la~~~g~~livD~a~~~~----~~--~~~~~ 249 (445)
T 1qgn_A 189 -VGALELALNQ-------KKVNLFFTESP-TNPFLRCVD----IELVSKLCHEKGALVCIDGTFATP----LN--QKALA 249 (445)
T ss_dssp -HHHHHHHHHH-------SCEEEEEEESS-CTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTCT----TT--CCTTT
T ss_pred -HHHHHHHhcc-------CCCCEEEEeCC-CCCCCcccC----HHHHHHHHHHcCCEEEEECCCccc----cc--CCccc
Confidence 2557777763 24589999997 888898877 899999999999999999999621 11 12234
Q ss_pred CCcceee--ehhccCCC-ccchheeEeCHHHHhhhc
Q 005009 680 CVPDIAC--YGKLLTGG-VIPLAATLATNAVFDSFV 712 (719)
Q Consensus 680 v~PDIvt--lgK~LggG-~~Plsavl~~~~i~~~~~ 712 (719)
..+|+++ ++|.+||+ .+++|++++++++++.+.
T Consensus 250 ~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~ 285 (445)
T 1qgn_A 250 LGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIR 285 (445)
T ss_dssp TTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHH
T ss_pred cCCEEEEECCcccccccccceEEEEEECHHHHHHHH
Confidence 5689986 89999874 347899999999887653
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.97 E-value=5.1e-09 Score=114.80 Aligned_cols=184 Identities=13% Similarity=0.073 Sum_probs=122.0
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccC
Q 005009 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~ 497 (719)
.|++.+|+.+.++...+. ...+...+|.++|+++++ .+.++|++||++|++.+++.+ . .|
T Consensus 31 p~~~~~a~~~~~~~~~y~----~~~~~~~~l~~~la~~~~---~~~v~~~~ggt~al~~~l~~l-~-----~g------- 90 (424)
T 2po3_A 31 RARLYERLDRALDSQWLS----NGGPLVREFEERVAGLAG---VRHAVATCNATAGLQLLAHAA-G-----LT------- 90 (424)
T ss_dssp HHHHHHHHHHHHHHTCCS----SSCHHHHHHHHHHHHHHT---SSEEEEESCHHHHHHHHHHHH-T-----CC-------
T ss_pred hHHHHHHHHHHHhcCCcc----cCCHHHHHHHHHHHHHhC---CCeEEEeCCHHHHHHHHHHHc-C-----CC-------
Confidence 468999998888653211 114677899999999987 368999999999999999977 2 11
Q ss_pred CCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCc-chhhhcccccc
Q 005009 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP-EWLYSKIVEHK 576 (719)
Q Consensus 498 ~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P-~~~~~~~~~~~ 576 (719)
.+|++...+||+... ++...|... ..++.. +.+
T Consensus 91 ---------d~Vlv~~~~~~~~~~-~~~~~G~~~----------------------------~~v~~~~~~~-------- 124 (424)
T 2po3_A 91 ---------GEVIMPSMTFAATPH-ALRWIGLTP----------------------------VFADIDPDTG-------- 124 (424)
T ss_dssp ---------SEEEEESSSCTHHHH-HHHHTTCEE----------------------------EEECBCTTTS--------
T ss_pred ---------CEEEECCCccHHHHH-HHHHcCCEE----------------------------EEEecCCCcC--------
Confidence 379999999998653 222222100 011110 000
Q ss_pred cccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCc
Q 005009 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656 (719)
Q Consensus 577 ~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gil 656 (719)
. -| .+.+++.+. .++.+|++... . |... .+++|.++|++||++
T Consensus 125 ----~---------~d--------~~~l~~~i~--------~~~~~v~~~~~-t---G~~~----~l~~i~~la~~~~~~ 167 (424)
T 2po3_A 125 ----N---------LD--------PDQVAAAVT--------PRTSAVVGVHL-W---GRPC----AADQLRKVADEHGLR 167 (424)
T ss_dssp ----S---------BC--------HHHHGGGCC--------TTEEEEEEECG-G---GCCC----CHHHHHHHHHHTTCE
T ss_pred ----C---------cC--------HHHHHHhhC--------cCCcEEEEECC-C---CCcC----CHHHHHHHHHHcCCE
Confidence 0 01 234544442 25666665432 2 4443 499999999999999
Q ss_pred EEEecccc-CccccCccccccccCCCcceeeeh----hccCCCccchheeEeC-HHHHhhh
Q 005009 657 VIFDEVFT-GFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLAT-NAVFDSF 711 (719)
Q Consensus 657 LI~DEVqT-GfGRtG~~~a~e~~gv~PDIvtlg----K~LggG~~Plsavl~~-~~i~~~~ 711 (719)
+|+||+|+ |+...|..+ +..+|+++++ |+|++| .+|+++++ +++++.+
T Consensus 168 li~Dea~~~g~~~~~~~~-----~~~~di~~~S~sk~K~l~~~--~~G~~v~~~~~l~~~l 221 (424)
T 2po3_A 168 LYFDAAHALGCAVDGRPA-----GSLGDAEVFSFHATKAVNAF--EGGAVVTDDADLAARI 221 (424)
T ss_dssp EEEECTTCTTCEETTEET-----TSSSSEEEEECCTTSSSCCS--SCEEEEESCHHHHHHH
T ss_pred EEEECccccCCeECCeec-----ccccCEEEEeCCCCCCccCC--CCeEEEeCCHHHHHHH
Confidence 99999999 887666432 2236888776 999874 67889998 7877655
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.1e-09 Score=119.07 Aligned_cols=90 Identities=13% Similarity=0.073 Sum_probs=63.4
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccc-c--cccCCCcceeeehhccCCCc
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-A--DLLGCVPDIACYGKLLTGGV 695 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a-~--e~~gv~PDIvtlgK~LggG~ 695 (719)
++.+|++... +...|.+. |.+.+++|.++|++||+++|+||++..+ ..+..+. . ...+....+.+++|.++.|
T Consensus 180 ~~~~v~~~~p-~NptG~~~-~~~~~~~l~~~a~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G- 255 (417)
T 3g7q_A 180 ETGMICVSRP-TNPTGNVI-TDEELMKLDRLANQHNIPLVIDNAYGVP-FPGIIFSEARPLWNPNIILCMSLSKLGLPG- 255 (417)
T ss_dssp TEEEEEEESS-CTTTCCCC-CHHHHHHHHHHHHHTTCCEEEECTTCTT-TTCCBCSCCCCCCCTTEEEEEESGGGTCTT-
T ss_pred CceEEEECCC-CCCCCCcc-CHHHHHHHHHHHHHcCCEEEEeCCCccc-cccccccccccCCCCCEEEEEechhccCCC-
Confidence 4667777654 67778765 6677999999999999999999999642 1121111 0 0112222366899976678
Q ss_pred cchheeEeCHHHHhhhc
Q 005009 696 IPLAATLATNAVFDSFV 712 (719)
Q Consensus 696 ~Plsavl~~~~i~~~~~ 712 (719)
+++|++++++++++.+.
T Consensus 256 ~r~G~~~~~~~~~~~~~ 272 (417)
T 3g7q_A 256 SRCGIIIANDKTITAIA 272 (417)
T ss_dssp SCCEEEECCHHHHHHHH
T ss_pred cceEEEEeCHHHHHHHH
Confidence 79999999999988764
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=98.96 E-value=1.1e-09 Score=117.32 Aligned_cols=90 Identities=18% Similarity=0.179 Sum_probs=67.6
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhc--CCcEEEeccccCccccCccccccccC
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR--KIPVIFDEVFTGFWRLGVETTADLLG 679 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~--gilLI~DEVqTGfGRtG~~~a~e~~g 679 (719)
+.+++.+.+ .++.+|++++. +...|.+.+ +++|.++|++| |+++|+||+|+ +|.. .+..+.+
T Consensus 127 ~~l~~~l~~-------~~~~~v~~~~~-~nptG~~~~----l~~i~~~~~~~~~~~~li~D~a~~-~~~~--~~~~~~~- 190 (385)
T 2bkw_A 127 ELITEKLSQ-------NSYGAVTVTHV-DTSTAVLSD----LKAISQAIKQTSPETFFVVDAVCS-IGCE--EFEFDEW- 190 (385)
T ss_dssp HHHHHHHHH-------SCCSEEEEESE-ETTTTEECC----HHHHHHHHHHHCTTSEEEEECTTT-TTTS--CCCTTTT-
T ss_pred HHHHHHHhc-------CCCCEEEEEcc-CCCcCeEcC----HHHHHHHHHhhCCCCEEEEECccc-cCCc--ccccccc-
Confidence 556777752 24568889997 899998887 89999999999 99999999996 4432 2222323
Q ss_pred CCcceeee--hhccCCCccchheeEeCHHHHh
Q 005009 680 CVPDIACY--GKLLTGGVIPLAATLATNAVFD 709 (719)
Q Consensus 680 v~PDIvtl--gK~LggG~~Plsavl~~~~i~~ 709 (719)
.+|++++ +|.++|+ ..+|++++++++++
T Consensus 191 -~~d~~~~s~~K~~~~~-~G~G~~~~~~~~~~ 220 (385)
T 2bkw_A 191 -GVDFALTASQKAIGAP-AGLSISLCSSRFMD 220 (385)
T ss_dssp -TCSEEEEESSSTTCCC-SCEEEEEECHHHHH
T ss_pred -CceEEEecCccccccC-CcceEEEEcHHHHH
Confidence 4788764 6999875 35689999998876
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=6.2e-09 Score=112.59 Aligned_cols=201 Identities=8% Similarity=-0.014 Sum_probs=124.0
Q ss_pred ccccCCCCC-CCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhh
Q 005009 408 WWTQGPDAT-LQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486 (719)
Q Consensus 408 ~~~~~lGH~-~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~ 486 (719)
+++..+|.. .+|++.+|+.++++...+ ...+...++.++|+++++. +.++|++||++|++.|++.+ +..
T Consensus 3 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~l~~~la~~~~~---~~~i~~~sGt~a~~~al~~~-~~~- 72 (390)
T 3b8x_A 3 MINYPLASSTWDDLEYKAIQSVLDSKMF-----TMGEYVKQYETQFAKTFGS---KYAVMVSSGSTANLLMIAAL-FFT- 72 (390)
T ss_dssp --CBCSCCCCCCHHHHHHHHHHHHHTCC-----SSCHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHHHT-TSS-
T ss_pred ceeccCCCCCCCHHHHHHHHHHHHcCCC-----CCChHHHHHHHHHHHHHCC---CcEEEECCHHHHHHHHHHHH-Hhh-
Confidence 344344432 268999999999876432 2367788999999999874 57899999999999999887 321
Q ss_pred ccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCc-
Q 005009 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP- 565 (719)
Q Consensus 487 ~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P- 565 (719)
...+. ....+||+...+||+...... ..|.. ...++..
T Consensus 73 ~~~~~------------~~g~~Vi~~~~~~~~~~~~~~-~~g~~----------------------------~~~~~~~~ 111 (390)
T 3b8x_A 73 KKPRL------------KKGDEIIVPAVSWSTTYYPLQ-QYGLR----------------------------VKFVDIDI 111 (390)
T ss_dssp SSCSC------------CTTCEEEEESSSCHHHHHHHH-HTTCE----------------------------EEEECBCT
T ss_pred hhcCC------------CCcCEEEECCCCcHHHHHHHH-HcCCE----------------------------EEEEecCc
Confidence 11010 123579999999998654322 22210 0011110
Q ss_pred chhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHH
Q 005009 566 EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRI 645 (719)
Q Consensus 566 ~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~ 645 (719)
+.+ + -| .+.+++.+. .++.+|++... .| .. ..+++
T Consensus 112 ~~~------------~---------~d--------~~~l~~~i~--------~~~~~v~~~~~-~g---~~----~~~~~ 146 (390)
T 3b8x_A 112 NTL------------N---------ID--------IESLKEAVT--------DSTKAILTVNL-LG---NP----NNFDE 146 (390)
T ss_dssp TTC------------S---------BC--------HHHHHHHCC--------TTEEEEEEECG-GG---CC----CCHHH
T ss_pred ccc------------C---------cC--------HHHHHHHhC--------cCCeEEEEECC-cc---Ch----hhHHH
Confidence 000 0 01 255666664 24667766432 23 33 34999
Q ss_pred HHHHHHhcCCcEEEecccc-CccccCccccccccCCCcceeeehhccCCCcc--chheeEeCH-HHHh
Q 005009 646 LVKECQNRKIPVIFDEVFT-GFWRLGVETTADLLGCVPDIACYGKLLTGGVI--PLAATLATN-AVFD 709 (719)
Q Consensus 646 Lr~Lc~k~gilLI~DEVqT-GfGRtG~~~a~e~~gv~PDIvtlgK~LggG~~--Plsavl~~~-~i~~ 709 (719)
|.++|++||+++|+||+|+ |.. +....+|+.+|+.+++|..+.++. ..|++++++ ++.+
T Consensus 147 i~~l~~~~~~~li~D~a~~~g~~-----~~~~~~g~~~~~~~~s~~~~k~~~~g~gG~~~~~~~~l~~ 209 (390)
T 3b8x_A 147 INKIIGGRDIILLEDNCESMGAT-----FNNKCAGTFGLMGTFSSFYSNHIATMEGGCIVTDDEEIYH 209 (390)
T ss_dssp HHHHHTTSCCEEEEECTTCTTCE-----ETTEETTSSSSEEEEECCTTSSSCSSSCEEEEESCHHHHH
T ss_pred HHHHHHHcCCEEEEECcCcccCE-----ECCcccccccceEEEEccCCCCCccCCceEEEeCCHHHHH
Confidence 9999999999999999997 332 233567888999988765443211 235666665 5654
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=3.7e-09 Score=112.94 Aligned_cols=207 Identities=12% Similarity=0.019 Sum_probs=129.9
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCC-----ChHHHHHHHHHHhccCCCCCCeEEEeCChHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENV-----YEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~-----~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~ 474 (719)
.|||+.++ |+. +|+|++|+.+++..........+. .+...++.++|++.++.. .+.++|+++|++|+
T Consensus 2 ~yld~~~~------~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~t~a~ 73 (382)
T 4eb5_A 2 AYFDYTSA------KPV-DERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGG-GGTVVFTSGATEAN 73 (382)
T ss_dssp CBCBTTTC------CCC-CHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCT-TEEEEEESSHHHHH
T ss_pred eeeccCCC------CCC-CHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEcCchHHHH
Confidence 48887663 678 999999999998763211100011 245678888999888743 25899999999999
Q ss_pred HHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCccc
Q 005009 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (719)
Q Consensus 475 E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~ 554 (719)
+.+++.+.+.+ ...| ..|+....+|++.......+.. .+.
T Consensus 74 ~~~~~~l~~~~-~~~g----------------d~Vl~~~~~~~~~~~~~~~~~~----~g~------------------- 113 (382)
T 4eb5_A 74 NLAIIGYAMRN-ARKG----------------KHILVSAVEHMSVINPAKFLQK----QGF------------------- 113 (382)
T ss_dssp HHHHHHHHHHH-GGGC----------------CEEEEETTCCHHHHHHHHHHTT----TTC-------------------
T ss_pred HHHHHHHHhhc-cCCC----------------CEEEECCCcchHHHHHHHHHHh----CCc-------------------
Confidence 99999883222 1222 3688888888774332221110 000
Q ss_pred ccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCc
Q 005009 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (719)
Q Consensus 555 ~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG 634 (719)
....++....+ ..| .+.+++.+. .++.+|+++.. +...|
T Consensus 114 ---~~~~v~~~~~~-----------~~d------------------~~~l~~~i~--------~~~~~v~~~~~-~nptG 152 (382)
T 4eb5_A 114 ---EVEYIPVGKYG-----------EVD------------------VSFIDQKLR--------DDTILVSVQHA-NNEIG 152 (382)
T ss_dssp ---EEEEECBCTTS-----------CBC------------------HHHHHHHCC--------TTEEEEECCSB-CTTTC
T ss_pred ---EEEEeccCCCC-----------ccC------------------HHHHHHHhc--------CCCeEEEEecc-CCCcc
Confidence 00111111000 001 245666664 25678999987 88889
Q ss_pred cccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeee--hhccCCCccchheeEeCHHH
Q 005009 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAV 707 (719)
Q Consensus 635 ~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtl--gK~LggG~~Plsavl~~~~i 707 (719)
.+.+ +++|.++|++||++ |+||+++ +|... +....+ .+|+++. +|.+|- ..+|+++++++.
T Consensus 153 ~~~~----l~~i~~l~~~~~~~-i~D~a~~-~g~~~--~~~~~~--~~di~~~s~sK~~g~--~g~G~~~~~~~~ 215 (382)
T 4eb5_A 153 TIQP----VEEISEVLAGKAAL-HIDATAS-VGQIE--VDVEKI--GADMLTISSNDIYGP--KGVGALWIRKEA 215 (382)
T ss_dssp BBCC----HHHHHHHHTTSSEE-EEECTTT-BTTBC--CCHHHH--TCSEEEEETGGGTCC--SSCEEEEEETTC
T ss_pred ccCC----HHHHHHHHHHCCCE-EEEcchh-cCCcc--cCcccc--CCCEEEeehHHhcCC--CceEEEEEcccc
Confidence 8887 89999999999999 9999996 65332 222222 4788754 696432 126788888763
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=9.1e-09 Score=108.88 Aligned_cols=210 Identities=13% Similarity=0.059 Sum_probs=123.6
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlK 479 (719)
++|||.++.. .. - .|++.+++.+...... . ....+...+|.++|++..+ .+.+++++||++|++.+++
T Consensus 4 ~~i~~~~~~~---~~-p-~~~~~~a~~~~~~~~~--~--y~~~~~~~~l~~~la~~~g---~~~~~~~~~gt~a~~~~~~ 71 (347)
T 1jg8_A 4 MMIDLRSDTV---TK-P-TEEMRKAMAQAEVGDD--V--YGEDPTINELERLAAETFG---KEAALFVPSGTMGNQVSIM 71 (347)
T ss_dssp -CEECSCGGG---CC-C-CHHHHHHHHTCCCCCG--G--GTCCHHHHHHHHHHHHHHT---CSEEEEESCHHHHHHHHHH
T ss_pred eEEEeccccC---CC-C-CHHHHHHHhcCCCCCc--c--cCCChHHHHHHHHHHHHhC---CceEEEecCcHHHHHHHHH
Confidence 6788887543 22 5 7899999876542111 1 1134566789999999887 3688999999999999987
Q ss_pred HHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCcccc---ccccCCCCCCCCCCCCCccCCCcccCCCccccc
Q 005009 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGA---MEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (719)
Q Consensus 480 lA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~ga---lslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (719)
... +.| .+|+.. ...|+.+... ....|..
T Consensus 72 ~~~-----~~g----------------d~Vl~~-~~~~~~~~~~~~~~~~~g~~-------------------------- 103 (347)
T 1jg8_A 72 AHT-----QRG----------------DEVILE-ADSHIFWYEVGAMAVLSGVM-------------------------- 103 (347)
T ss_dssp HHC-----CTT----------------CEEEEE-TTCHHHHSSTTHHHHHTCCE--------------------------
T ss_pred Hhc-----CCC----------------CEEEEc-CcchhhhccccchhhccCeE--------------------------
Confidence 651 111 245554 4455543321 1111100
Q ss_pred CcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCC-cc
Q 005009 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAG-GM 635 (719)
Q Consensus 557 ~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~g-G~ 635 (719)
...+ .++.+ ..| .+.+++.+.+.. ....++.+|++++. +... |.
T Consensus 104 --~~~v-~~~~~-----------~~d------------------~~~l~~~i~~~~--~~~~~~~~v~~~~~-~npt~G~ 148 (347)
T 1jg8_A 104 --PHPV-PGKNG-----------AMD------------------PDDVRKAIRPRN--IHFPRTSLIAIENT-HNRSGGR 148 (347)
T ss_dssp --EEEE-CEETT-----------EEC------------------HHHHHHHSCCSC--TTSCCEEEEEEESS-BTTTTSB
T ss_pred --EEEe-cCCCC-----------ccC------------------HHHHHHHhcccc--ccccCceEEEEecc-ccccCCc
Confidence 0001 00000 001 255666664200 01136789999987 7776 65
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeccccCccc---cCccccccccCCCcce--eeehhccCCCccchhe-eEeCHHHHh
Q 005009 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR---LGVETTADLLGCVPDI--ACYGKLLTGGVIPLAA-TLATNAVFD 709 (719)
Q Consensus 636 ~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGR---tG~~~a~e~~gv~PDI--vtlgK~LggG~~Plsa-vl~~~~i~~ 709 (719)
..|.+.+++|.++|++||+++|+||+|. +|. .|.. ...+....|. ++++|.+++ |+|+ +++++++++
T Consensus 149 -~~~~~~l~~i~~~a~~~~~~li~D~a~~-~~~~~~~~~~--~~~~~~~~d~~~~s~sK~l~~---~~G~~~~~~~~~~~ 221 (347)
T 1jg8_A 149 -VVPLENIKEICTIAKEHGINVHIDGARI-FNASIASGVP--VKEYAGYADSVMFCLSKGLCA---PVGSVVVGDRDFIE 221 (347)
T ss_dssp -CCCHHHHHHHHHHHHHHTCEEEEEETTH-HHHHHHHCCC--HHHHHHTCSEEEEESSSTTCC---SSCEEEEECHHHHH
T ss_pred -cCcHHHHHHHHHHHHHCCCEEEeehhhh-hcchhhcCCC--hHHhcccccEEEEecccccCC---CceEEEEcCHHHHH
Confidence 4578899999999999999999999874 321 1211 1111112343 469999975 4674 566877765
Q ss_pred hh
Q 005009 710 SF 711 (719)
Q Consensus 710 ~~ 711 (719)
.+
T Consensus 222 ~~ 223 (347)
T 1jg8_A 222 RA 223 (347)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=3e-09 Score=113.50 Aligned_cols=187 Identities=11% Similarity=0.047 Sum_probs=117.2
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccC
Q 005009 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~ 497 (719)
+|++.+|+.++++...+ ...+...++.++|+++++. +.++|++||++|++.+++.+ +.+. +
T Consensus 12 ~~~v~~a~~~~~~~~~~-----~~~~~~~~l~~~la~~~~~---~~v~~~~ggt~al~~~~~~~-~~~~-~--------- 72 (375)
T 2fnu_A 12 DKEDKKAVLEVLNSKQL-----TQGKRSLLFEEALCEFLGV---KHALVFNSATSALLTLYRNF-SEFS-A--------- 72 (375)
T ss_dssp CHHHHHHHHHHHTSSCC-----SSSHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHHHS-SCCC-T---------
T ss_pred CHHHHHHHHHHHHcCcc-----cCChHHHHHHHHHHHHhCC---CeEEEeCCHHHHHHHHHHHh-cccC-C---------
Confidence 89999999999876322 1256678999999999873 58999999999999999977 2110 1
Q ss_pred CCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhccccccc
Q 005009 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKD 577 (719)
Q Consensus 498 ~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~ 577 (719)
...+|+....+||+..... ...|... ..++.....
T Consensus 73 -------~gd~Vl~~~~~~~~~~~~~-~~~g~~~----------------------------~~~~~~~~~--------- 107 (375)
T 2fnu_A 73 -------DRNEIITTPISFVATANML-LESGYTP----------------------------VFAGIKNDG--------- 107 (375)
T ss_dssp -------TSCEEEECSSSCTHHHHHH-HHTTCEE----------------------------EECCBCTTS---------
T ss_pred -------CCCEEEECCCccHhHHHHH-HHCCCEE----------------------------EEeccCCCC---------
Confidence 1247888888888854332 2221100 001100000
Q ss_pred ccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcE
Q 005009 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (719)
Q Consensus 578 ~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilL 657 (719)
..| .+.+++.+. .++.+|++... .|.+.+ +++|.++|++||+++
T Consensus 108 --~~d------------------~~~l~~~i~--------~~~~~v~~~~~----tG~~~~----l~~i~~l~~~~~~~l 151 (375)
T 2fnu_A 108 --NID------------------ELALEKLIN--------ERTKAIVSVDY----AGKSVE----VESVQKLCKKHSLSF 151 (375)
T ss_dssp --SBC------------------GGGSGGGCC--------TTEEEEEEECG----GGCCCC----HHHHHHHHHHHTCEE
T ss_pred --CCC------------------HHHHHhhcC--------cCceEEEEeCC----cCCccC----HHHHHHHHHHcCCEE
Confidence 001 122333332 24666665543 466665 899999999999999
Q ss_pred EEeccccCccccCccccccccCCCccee--eeh--hccCCCccchheeEeC--HHHHhhh
Q 005009 658 IFDEVFTGFWRLGVETTADLLGCVPDIA--CYG--KLLTGGVIPLAATLAT--NAVFDSF 711 (719)
Q Consensus 658 I~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlg--K~LggG~~Plsavl~~--~~i~~~~ 711 (719)
|+||+|+ +|... ....++..+|++ +++ |.+|.| +|+++++ +++++.+
T Consensus 152 i~D~a~~-~~~~~---~~~~~~~~~~i~~~s~s~~K~~~~g---~g~~~~~~~~~~~~~~ 204 (375)
T 2fnu_A 152 LSDSSHA-LGSEY---QNKKVGGFALASVFSFHAIKPITTA---EGGAVVTNDSELHEKM 204 (375)
T ss_dssp EEECTTC-TTCEE---TTEETTSSSSEEEEECCTTSSSCCS---SCEEEEESCHHHHHHH
T ss_pred EEECccc-cCCeE---CCeeccccCCeEEEeCCCCCCcccc---CceEEEeCCHHHHHHH
Confidence 9999996 43322 112334334655 677 999765 5777774 6676544
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=98.94 E-value=1.9e-09 Score=113.74 Aligned_cols=165 Identities=13% Similarity=0.011 Sum_probs=109.7
Q ss_pred HHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccc
Q 005009 447 ECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEA 526 (719)
Q Consensus 447 ~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galsl 526 (719)
+|.++|+++.+. +.+++++||++|++.+++... +. ..+|+....+||+.......+
T Consensus 2 ~l~~~la~~~g~---~~~i~~~sG~~a~~~~~~~~~-----~~----------------g~~v~~~~~~~~~~~~~~~~~ 57 (331)
T 1pff_A 2 ALEGKIAKLEHA---EACAATASGMGAIAASVWTFL-----KA----------------GDHLISDDCLYGCTHALFEHQ 57 (331)
T ss_dssp HHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHC-----CT----------------TCEEEEESCCCHHHHHHHHTH
T ss_pred hHHHHHHHHhCC---CeEEEeCChHHHHHHHHHHhc-----CC----------------CCEEEEcCCCcchHHHHHHHH
Confidence 577888888873 478889999999999999761 11 247899999888843332211
Q ss_pred cCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHH
Q 005009 527 QAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQ 606 (719)
Q Consensus 527 t~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~ 606 (719)
.... + .....+| ..|. +.+++
T Consensus 58 ~~~~---g------------------------~~~~~~~--------------~~d~------------------~~l~~ 78 (331)
T 1pff_A 58 LRKF---G------------------------VEVDFID--------------MAVP------------------GNIEK 78 (331)
T ss_dssp HHHT---T------------------------CEEEEEC--------------TTST------------------THHHH
T ss_pred HHhc---C------------------------CEEEEeC--------------CCCH------------------HHHHH
Confidence 1000 0 0000011 1111 23444
Q ss_pred HHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHh-cCCcEEEeccccCccccCccccccccCCCccee
Q 005009 607 NLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN-RKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA 685 (719)
Q Consensus 607 ~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k-~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv 685 (719)
.+. +++.+|++++. ++..|.+.+ +++|.++|++ ||+++|+||+|+. |...... .++ +|++
T Consensus 79 ~i~--------~~~~~v~~~~~-~nptG~~~~----~~~i~~~~~~~~~~~li~D~a~~~-~~~~~~~---~~~--~d~~ 139 (331)
T 1pff_A 79 HLK--------PNTRIVYFETP-ANPTLKVID----IEDAVKQARKQKDILVIVDNTFAS-PILTNPL---DLG--VDIV 139 (331)
T ss_dssp TCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHTTSSSCEEEEECTTTH-HHHCCGG---GGT--CSEE
T ss_pred hhc--------CCCeEEEEECC-CCCcCcccC----HHHHHHHHhhhcCCEEEEECCCcc-cccCChh---hcC--CcEE
Confidence 442 36789999997 899999886 9999999999 9999999999962 2222111 244 5655
Q ss_pred --eehhccCCCccc-hheeEeCH-HHHhhhcC
Q 005009 686 --CYGKLLTGGVIP-LAATLATN-AVFDSFVG 713 (719)
Q Consensus 686 --tlgK~LggG~~P-lsavl~~~-~i~~~~~~ 713 (719)
+++|.++++-.+ +|++++++ ++++.+..
T Consensus 140 ~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~ 171 (331)
T 1pff_A 140 VHSATKYINGHTDVVAGLVCSRADIIAKVKSQ 171 (331)
T ss_dssp EEETTTTTSSSSSCCCEEEEECHHHHHHHHHT
T ss_pred EEECccccCCCCCceEEEEEeCcHHHHHHHHH
Confidence 699999874357 67899998 88877654
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=7.9e-09 Score=109.83 Aligned_cols=205 Identities=11% Similarity=0.002 Sum_probs=127.5
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCC-----CChHHHHHHHHHHhccCCCCCCeEEEeCChHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPEN-----VYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~-----~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~ 474 (719)
-|||+.+ -+.. +|++.+|+.+++.+........+ ..+...++.++|++.++.. .+.++|+++|++|+
T Consensus 2 iyld~~~------~~~~-~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~i~~~~g~~~a~ 73 (382)
T 4hvk_A 2 AYFDYTS------AKPV-DERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGG-GGTVVFTSGATEAN 73 (382)
T ss_dssp CBCBTTT------CCCC-CHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCT-TEEEEEESSHHHHH
T ss_pred EeecCCC------cCCC-CHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCC-cCeEEEECCchHHH
Confidence 4788665 3567 99999999999876322111111 1234558888888887743 35799999999999
Q ss_pred HHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCcccccccc--CCCCCCCCCCCCCccCCCcccCCCc
Q 005009 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQ--APSPYTGFLQQPWYSGRGLFLDPPT 552 (719)
Q Consensus 475 E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt--~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (719)
+.+++.... .....| ..||.....|++.......+. |..
T Consensus 74 ~~~~~~~~~-~~~~~g----------------d~vi~~~~~~~~~~~~~~~~~~~g~~---------------------- 114 (382)
T 4hvk_A 74 NLAIIGYAM-RNARKG----------------KHILVSAVEHMSVINPAKFLQKQGFE---------------------- 114 (382)
T ss_dssp HHHHHHHHH-HHGGGC----------------CEEEEETTCCHHHHHHHHHHHHTTCE----------------------
T ss_pred HHHHHHhhh-hhcCCC----------------CEEEECCCCcHHHHHHHHHHHhcCCE----------------------
Confidence 999998732 221222 367777777766433221111 100
Q ss_pred ccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 005009 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (719)
Q Consensus 553 ~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~ 632 (719)
...++....+ ..| .+.+++.+. .+..+|+++.. +..
T Consensus 115 ------~~~v~~~~~~-----------~~d------------------~~~l~~~i~--------~~~~~v~~~~~-~np 150 (382)
T 4hvk_A 115 ------VEYIPVGKYG-----------EVD------------------VSFIDQKLR--------DDTILVSVQHA-NNE 150 (382)
T ss_dssp ------EEEECBCTTS-----------CBC------------------HHHHHHHCC--------TTEEEEECCSB-CTT
T ss_pred ------EEEeccCCCC-----------CcC------------------HHHHHHHhc--------cCceEEEEECC-CCC
Confidence 0111111000 001 255666664 35689999997 899
Q ss_pred CccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceee--ehhccCCCccchheeEeCHHH
Q 005009 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLATNAV 707 (719)
Q Consensus 633 gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvt--lgK~LggG~~Plsavl~~~~i 707 (719)
.|.+.+ +++|.++|++||+ +|+||+|+ +|.. .+..+.+ .+|+++ ++|.+| + ..+|+++++++.
T Consensus 151 tG~~~~----~~~i~~l~~~~~~-li~D~a~~-~~~~--~~~~~~~--~~d~~~~s~~K~~g-~-~g~g~~~~~~~~ 215 (382)
T 4hvk_A 151 IGTIQP----VEEISEVLAGKAA-LHIDATAS-VGQI--EVDVEKI--GADMLTISSNDIYG-P-KGVGALWIRKEA 215 (382)
T ss_dssp TCBBCC----HHHHHHHHSSSSE-EEEECTTT-BTTB--CCCHHHH--TCSEEEEESGGGTS-C-TTCEEEEEETTC
T ss_pred ceeeCC----HHHHHHHHHHcCE-EEEEhHHh-cCCC--CCCchhc--CCCEEEEeHHHhcC-C-CceEEEEEcCcc
Confidence 998887 8999999999999 99999996 3321 1222333 367775 559543 3 347888887753
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=98.93 E-value=5.1e-09 Score=114.51 Aligned_cols=169 Identities=9% Similarity=0.036 Sum_probs=114.7
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
+.++...+|.++|+++.+. +.+++++||+||++.|++ .. +. ...||+....|||.
T Consensus 52 ~~~~~~~~lr~~la~~~g~---~~~i~~~sGt~a~~~al~-~~-----~~----------------gd~Vi~~~~~y~~~ 106 (393)
T 1n8p_A 52 SQNPNRENLERAVAALENA---QYGLAFSSGSATTATILQ-SL-----PQ----------------GSHAVSIGDVYGGT 106 (393)
T ss_dssp TCCHHHHHHHHHHHHHTTC---SEEEEESCHHHHHHHHHH-TS-----CS----------------SCEEEEESSCCHHH
T ss_pred CCChhHHHHHHHHHHHhCC---CcEEEECChHHHHHHHHH-Hc-----CC----------------CCEEEEeCCCchHH
Confidence 3466778999999998874 478899999999999999 41 11 13788888888873
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
...+... .+. .+. ....+| . +
T Consensus 107 -~~~~~~~----~~~---------~G~-------------~v~~v~--------------~--------------~---- 127 (393)
T 1n8p_A 107 -HRYFTKV----ANA---------HGV-------------ETSFTN--------------D--------------L---- 127 (393)
T ss_dssp -HHHHHHT----STT---------TCS-------------CCEEES--------------S--------------H----
T ss_pred -HHHHHHH----HHH---------cCc-------------EEEEeC--------------C--------------C----
Confidence 2221100 000 000 000011 0 0
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhc----CCcEEEeccccCccccCccccc
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR----KIPVIFDEVFTGFWRLGVETTA 675 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~----gilLI~DEVqTGfGRtG~~~a~ 675 (719)
. +.+++.+. .++.+|++|.+ ++..|.+.+ +++|.++|++| |+++|+||+|+++.+ +..+.
T Consensus 128 d-~~l~~~i~--------~~t~lv~~~~~-~nptG~~~~----l~~i~~la~~~~~~~~~~livD~a~~~~~~-~~~~~- 191 (393)
T 1n8p_A 128 L-NDLPQLIK--------ENTKLVWIETP-TNPTLKVTD----IQKVADLIKKHAAGQDVILVVDNTFLSPYI-SNPLN- 191 (393)
T ss_dssp H-HHHHHHSC--------SSEEEEEECSS-CTTTCCCCC----HHHHHHHHHHHTTTTTCEEEEECTTTHHHH-CCGGG-
T ss_pred h-HHHHHhcc--------cCceEEEEECC-CCCcceecC----HHHHHHHHHHhCCCCCCEEEEeCCcccccc-CCHHH-
Confidence 1 34555553 35789999997 899999886 99999999999 999999999987654 33322
Q ss_pred cccCCCccee--eehhccCCCccch-heeEeC-HHHHhhhc
Q 005009 676 DLLGCVPDIA--CYGKLLTGGVIPL-AATLAT-NAVFDSFV 712 (719)
Q Consensus 676 e~~gv~PDIv--tlgK~LggG~~Pl-savl~~-~~i~~~~~ 712 (719)
+ .+|++ +++|.+|+.-.++ |+++++ +++++.+.
T Consensus 192 --~--~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~ 228 (393)
T 1n8p_A 192 --F--GADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQ 228 (393)
T ss_dssp --G--TCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHH
T ss_pred --c--CCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHH
Confidence 2 37887 7999999632677 777775 77777653
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.93 E-value=7e-09 Score=117.34 Aligned_cols=190 Identities=16% Similarity=0.096 Sum_probs=121.4
Q ss_pred HHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhh----ccccccccccCCCccccCcceEEEEEeCCcccCc
Q 005009 445 ALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS----FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (719)
Q Consensus 445 ~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~----~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t 520 (719)
..++.+.|+++++.+ ...++|+++|+|||..|++.+ |.+. +..|. ....|..|++.+ ..|.+.
T Consensus 150 e~~~~~~la~l~g~~-~~~~~~t~ggtea~~~al~~a-r~~~~~~~~~~G~----------~~~~~~~vl~s~-~~h~s~ 216 (515)
T 2jis_A 150 EEEVLRKLRALVGWS-SGDGIFCPGGSISNMYAVNLA-RYQRYPDCKQRGL----------RTLPPLALFTSK-ECHYSI 216 (515)
T ss_dssp HHHHHHHHHHHHTCS-SCEEEEESSHHHHHHHHHHHH-HHHHCTTHHHHCG----------GGSCCEEEEEET-TSCTHH
T ss_pred HHHHHHHHHHHhCCC-CCCeEEcCCcHHHHHHHHHHH-HHHHhhHHhhcCc----------cccCCeEEEECC-CccHHH
Confidence 345666788877743 358999999999999999999 5432 11111 000122454444 457665
Q ss_pred cccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHH
Q 005009 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (719)
Q Consensus 521 ~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~ 600 (719)
..++...+.. . .....++....++ -|
T Consensus 217 ~~~~~~~g~g-~------------------------~~v~~v~~~~~~~---------------------~d-------- 242 (515)
T 2jis_A 217 QKGAAFLGLG-T------------------------DSVRVVKADERGK---------------------MV-------- 242 (515)
T ss_dssp HHHHHHTTSC-G------------------------GGEEEECBCTTSC---------------------BC--------
T ss_pred HHHHHHcCCC-C------------------------CcEEEEecCCCCc---------------------CC--------
Confidence 5554443210 0 0011222211110 01
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC
Q 005009 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (719)
Q Consensus 601 ~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv 680 (719)
.+.|++.|.+.. ..+.++++|++... ....|.+.+ +++|.++|++||++||+|++++|+......+.+...|+
T Consensus 243 ~~~L~~~i~~~~--~~g~~~~~Vv~~~~-~n~tG~i~~----l~~I~~la~~~g~~l~vD~a~~~~~~~~~~~~~~~~g~ 315 (515)
T 2jis_A 243 PEDLERQIGMAE--AEGAVPFLVSATSG-TTVLGAFDP----LEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGI 315 (515)
T ss_dssp HHHHHHHHHHHH--HTTCEEEEEEEEBS-CTTTCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTG
T ss_pred HHHHHHHHHHHH--hCCCCcEEEEEeCC-CCCCCCccC----HHHHHHHHHHcCCeEEEehhhhhHHHhChhhHhhcCCC
Confidence 244555554210 11336788888876 777888877 99999999999999999999998877666555555566
Q ss_pred -Ccceeee--hhccCCCccchheeEeCHH--HHh
Q 005009 681 -VPDIACY--GKLLTGGVIPLAATLATNA--VFD 709 (719)
Q Consensus 681 -~PDIvtl--gK~LggG~~Plsavl~~~~--i~~ 709 (719)
.+|++++ .|.++++ .++|+++++++ +++
T Consensus 316 ~~aD~v~~s~hK~l~~p-~g~G~l~~~~~~~~~~ 348 (515)
T 2jis_A 316 QRADSVAWNPHKLLAAG-LQCSALLLQDTSNLLK 348 (515)
T ss_dssp GGCSEEEECTTSTTCCC-SCCEEEEESCCSCHHH
T ss_pred ccCCEEEECcccccCCC-CCeeEEEEeChHHHHH
Confidence 7899987 9999877 57899999977 655
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=98.92 E-value=3.4e-09 Score=116.52 Aligned_cols=91 Identities=15% Similarity=0.106 Sum_probs=64.9
Q ss_pred CcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccc---ccccCCCcceeeehhccCCC
Q 005009 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT---ADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a---~e~~gv~PDIvtlgK~LggG 694 (719)
.++.+|++... +...|.+. |.+.+++|.++|++||+++|+||+|..+ ..+..+. ....+...++.+++|.+..|
T Consensus 205 ~~~~~v~i~~p-~nptG~~~-~~~~l~~i~~~a~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G 281 (444)
T 3if2_A 205 GRIGAICCSRP-TNPTGNVL-TDEEMAHLAEIAKRYDIPLIIDNAYGMP-FPNIIYSDAHLNWDNNTILCFSLSKIGLPG 281 (444)
T ss_dssp TCEEEEEEESS-CTTTCCCC-CHHHHHHHHHHHHHTTCCEEEECTTCTT-TTCCBCSCCCCCCCTTEEEEEESTTTTCGG
T ss_pred CCceEEEeCCC-CCCCCCcC-CHHHHHHHHHHHHHCCCEEEEECCCCCc-ccccccccccccCCCCEEEEechhhccCCC
Confidence 35666666543 67778755 6778999999999999999999999632 1111111 01233445567899987778
Q ss_pred ccchheeEeCHHHHhhhc
Q 005009 695 VIPLAATLATNAVFDSFV 712 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~ 712 (719)
+++|++++++++.+.+.
T Consensus 282 -~r~G~~~~~~~l~~~~~ 298 (444)
T 3if2_A 282 -MRTGIIVADAKVIEAVS 298 (444)
T ss_dssp -GCCEEEECCHHHHHHHH
T ss_pred -CceEEEEECHHHHHHHH
Confidence 79999999999988764
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.91 E-value=6.9e-10 Score=121.76 Aligned_cols=102 Identities=9% Similarity=0.042 Sum_probs=76.3
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHH-HhcCCcEEEeccccC--ccccCc----ccc
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC-QNRKIPVIFDEVFTG--FWRLGV----ETT 674 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc-~k~gilLI~DEVqTG--fGRtG~----~~a 674 (719)
+.+++.+. ..++.+|++.|..+.-.|.+. |.+.+++|.++| ++||+++|+||++++ |+..+. ++.
T Consensus 170 ~~l~~~l~-------~~~~~~v~~~p~~~NPtG~~~-~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~ 241 (427)
T 3ppl_A 170 DAVEELVK-------NPQVKGMWVVPVFSNPTGFTV-TEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVG 241 (427)
T ss_dssp HHHHHHTT-------STTEEEEEECCSSCTTTCCCC-CHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHH
T ss_pred HHHHHHHh-------cCCCeEEEECCCCCCCCCccC-CHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhh
Confidence 55666663 246788888976466677766 566699999999 999999999999998 544442 222
Q ss_pred c----cccCCCcceeeehhccCCCccchheeEeCHHHHhhhc
Q 005009 675 A----DLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 675 ~----e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
. +..+...++.+++|.++.| +.+|.+++++++++.+.
T Consensus 242 ~~~~~~~~~~~i~~~S~SK~~~~G-~r~G~~~~~~~l~~~~~ 282 (427)
T 3ppl_A 242 LGEAAGNPNRFWAFTSTSKITLAG-AGVSFFLTSAENRKWYT 282 (427)
T ss_dssp HHHHTTCTTSEEEEEESTTTSCTT-SSCEEEECCHHHHHHHH
T ss_pred hhhccCCCCcEEEEechhhccCcC-ccEEEEEcCHHHHHHHH
Confidence 2 1345556677999997778 79999999999887764
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=8.7e-09 Score=112.64 Aligned_cols=190 Identities=15% Similarity=0.082 Sum_probs=120.8
Q ss_pred CHHHHHHHHHhhhhcccc-c-CCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccc
Q 005009 418 QIELARDMGYTAARFGHV-M-FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDF 495 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~-~-~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~ 495 (719)
+|++.+|+.++++...+. . ......+...+++++|++..+. +.++|++||++|++.|++.+ +. ..
T Consensus 15 ~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~---~~~i~~~~gt~al~~~~~~~-~~---~~------ 81 (418)
T 2c81_A 15 SDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNGV---PYCVPTTSGSTALMLALEAL-GI---GE------ 81 (418)
T ss_dssp CHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHHHT-TC---CT------
T ss_pred CHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHc-CC---CC------
Confidence 699999999998764322 1 1112244478999999998873 47889999999999999876 11 11
Q ss_pred cCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcc-hhhhcccc
Q 005009 496 LGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE-WLYSKIVE 574 (719)
Q Consensus 496 ~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~-~~~~~~~~ 574 (719)
..+||....+||+..... ...|.. ...++... .+
T Consensus 82 ----------gd~Vl~~~~~~~~~~~~~-~~~g~~----------------------------~~~~~~~~~~~------ 116 (418)
T 2c81_A 82 ----------GDEVIVPSLTWIATATAV-LNVNAL----------------------------PVFVDVEADTY------ 116 (418)
T ss_dssp ----------TCEEEEESSSCTHHHHHH-HHTTCE----------------------------EEEECBCTTTC------
T ss_pred ----------cCEEEECCCccHhHHHHH-HHcCCE----------------------------EEEEecCCCCC------
Confidence 247899999988864432 222110 00111110 00
Q ss_pred cccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcC
Q 005009 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK 654 (719)
Q Consensus 575 ~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~g 654 (719)
. -| .+.+++.+. .++.+|++... . |...+ +++|.++|++||
T Consensus 117 ------~---------~d--------~~~l~~~i~--------~~~~~v~~~~~-~---G~~~~----~~~i~~~~~~~~ 157 (418)
T 2c81_A 117 ------C---------ID--------PQLIKSAIT--------DKTKAIIPVHL-F---GSMAN----MDEINEIAQEHN 157 (418)
T ss_dssp ------S---------BC--------HHHHGGGCC--------TTEEEECCBCC-T---TCCCC----HHHHHHHHHHTT
T ss_pred ------C---------cC--------HHHHHHhhC--------CCCeEEEEeCC-c---CCccc----HHHHHHHHHHCC
Confidence 0 01 234544442 35778887664 3 44443 899999999999
Q ss_pred CcEEEeccccCccc-cCccccccccCCCcceee--e--hhccCCCccchheeEeC-HHHHhhh
Q 005009 655 IPVIFDEVFTGFWR-LGVETTADLLGCVPDIAC--Y--GKLLTGGVIPLAATLAT-NAVFDSF 711 (719)
Q Consensus 655 ilLI~DEVqTGfGR-tG~~~a~e~~gv~PDIvt--l--gK~LggG~~Plsavl~~-~~i~~~~ 711 (719)
+++|+||+|+.+.+ .|. ..+..+|+++ + +|.+|+| .+|+++++ +++++.+
T Consensus 158 ~~li~D~a~~~~~~~~~~-----~~~~~~~~~~~s~s~~K~~~~g--~~g~~~~~~~~l~~~~ 213 (418)
T 2c81_A 158 LFVIEDCAQSHGSVWNNQ-----RAGTIGDIGAFSCQQGKVLTAG--EGGIIVTKNPRLFELI 213 (418)
T ss_dssp CEEEEECTTCTTCEETTE-----ETTSSSSEEEEECCTTSSSCSS--SCEEEEESCHHHHHHH
T ss_pred CEEEEECcccccCccCCE-----ecccccceEEEeccCCcccCCC--CeEEEEECCHHHHHHH
Confidence 99999999986542 232 2232346654 4 9999886 67888884 7776654
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=6.9e-09 Score=111.87 Aligned_cols=187 Identities=16% Similarity=0.170 Sum_probs=119.8
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccC
Q 005009 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~ 497 (719)
.|++.+|+.++++...+. ....+...+|.++|+++++. +..++++||++|++.|++.+ + ...
T Consensus 16 ~~~~~~a~~~~l~~~~~~---~~~~~~~~~l~~~la~~~~~---~~~i~~~sGt~al~~~l~~l-~---~~~-------- 77 (388)
T 1b9h_A 16 DDAERNGLVRALEQGQWW---RMGGDEVNSFEREFAAHHGA---AHALAVTNGTHALELALQVM-G---VGP-------- 77 (388)
T ss_dssp CHHHHHHHHHHHHTSCCB---TTTCSHHHHHHHHHHHHTTC---SEEEEESCHHHHHHHHHHHT-T---CCT--------
T ss_pred CHHHHHHHHHHHHcCCee---ecCCHHHHHHHHHHHHHhCC---CeEEEeCCHHHHHHHHHHHc-C---CCC--------
Confidence 489999999998763221 12356678999999999874 46778889999999999876 1 011
Q ss_pred CCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCc-chhhhcccccc
Q 005009 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP-EWLYSKIVEHK 576 (719)
Q Consensus 498 ~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P-~~~~~~~~~~~ 576 (719)
..+||+...+||+..... ...|.. ...++.. +.+
T Consensus 78 --------gd~Vi~~~~~~~~~~~~~-~~~g~~----------------------------~~~v~~~~~~~-------- 112 (388)
T 1b9h_A 78 --------GTEVIVPAFTFISSSQAA-QRLGAV----------------------------TVPVDVDAATY-------- 112 (388)
T ss_dssp --------TCEEEEESSSCTHHHHHH-HHTTCE----------------------------EEEECBCTTTC--------
T ss_pred --------cCEEEECCCccHHHHHHH-HHcCCE----------------------------EEEEecCCCcC--------
Confidence 247999999998864322 211110 0011110 000
Q ss_pred cccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCc
Q 005009 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656 (719)
Q Consensus 577 ~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gil 656 (719)
. -| .+.+++.+. .++.+|+ |. .. .|.+.+ +++|.++|++||++
T Consensus 113 ----~---------~d--------~~~l~~~i~--------~~~~~v~--~~-n~-tG~~~~----l~~i~~la~~~~~~ 155 (388)
T 1b9h_A 113 ----N---------LD--------PEAVAAAVT--------PRTKVIM--PV-HM-AGLMAD----MDALAKISADTGVP 155 (388)
T ss_dssp ----C---------BC--------HHHHHHHCC--------TTEEEEC--CB-CG-GGCCCC----HHHHHHHHHHHTCC
T ss_pred ----C---------CC--------HHHHHHhcC--------cCceEEE--Ee-CC-ccCcCC----HHHHHHHHHHcCCE
Confidence 0 01 255666663 2466666 75 44 466655 89999999999999
Q ss_pred EEEecccc-CccccCccccccccCCCcceeeeh----hccCCCccchheeEeCHH-H--Hhhh
Q 005009 657 VIFDEVFT-GFWRLGVETTADLLGCVPDIACYG----KLLTGGVIPLAATLATNA-V--FDSF 711 (719)
Q Consensus 657 LI~DEVqT-GfGRtG~~~a~e~~gv~PDIvtlg----K~LggG~~Plsavl~~~~-i--~~~~ 711 (719)
+|+||+|+ |+...|..+ ..+ +|+++++ |+++|| .+|+++++++ + ++.+
T Consensus 156 li~D~a~~~g~~~~~~~~--~~~---~~i~~~S~s~~K~l~g~--~~G~~~~~~~~~~~~~~~ 211 (388)
T 1b9h_A 156 LLQDAAHAHGARWQGKRV--GEL---DSIATFSFQNGKLMTAG--EGGAVVFPDGETEKYETA 211 (388)
T ss_dssp BCEECTTCTTCEETTEEG--GGS---SSCEEEECCTTSSSCSS--SCEEEEECTTCHHHHHHH
T ss_pred EEEecchhcCCccCCeec--ccc---cceEEEEccCCCcccCC--CeEEEEECCHHHHHHHHH
Confidence 99999997 443444322 222 3676666 999877 3788888875 6 4543
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=8e-09 Score=109.37 Aligned_cols=200 Identities=13% Similarity=0.048 Sum_probs=122.2
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccC---CCCCCeEEEeCChHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVG---KGWASRAYFSDNGSTAIEI 476 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~---~~~~~rv~f~~SGsEA~E~ 476 (719)
+++||.++.. .++ . +|++.+|+.+++.+..... +......++.+.|+++.+ -. .+.++|+++|++|++.
T Consensus 20 ~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~~---y~~~~~~~lr~~la~~~~~~~~~-~~~v~~~~G~~~al~~ 91 (335)
T 1uu1_A 20 DKTYLALNEN--PFP-F-PEDLVDEVFRRLNSDALRI---YYDSPDEELIEKILSYLDTDFLS-KNNVSVGNGADEIIYV 91 (335)
T ss_dssp CSEEESSCCC--SSC-C-CHHHHHHHHHTCCGGGGGS---CCCSSCHHHHHHHHHHHTCSSCC-GGGEEEESSHHHHHHH
T ss_pred cceECCCCCC--CCC-C-CHHHHHHHHHHhhhhhhhc---CCCCchHHHHHHHHHHcCCCCCC-HHHEEEcCChHHHHHH
Confidence 6888887653 354 5 8999999999884322211 112224567777777665 22 3689999999999999
Q ss_pred HHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCccccc
Q 005009 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (719)
Q Consensus 477 AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (719)
+++.+ + .+|+.. .+||+....+ ...|...
T Consensus 92 ~~~~~-----g-------------------d~Vl~~-p~y~~~~~~~-~~~g~~~------------------------- 120 (335)
T 1uu1_A 92 MMLMF-----D-------------------RSVFFP-PTYSCYRIFA-KAVGAKF------------------------- 120 (335)
T ss_dssp HHHHS-----S-------------------EEEECS-SSCHHHHHHH-HHHTCEE-------------------------
T ss_pred HHHHh-----C-------------------CcEEEC-CCcHHHHHHH-HHcCCeE-------------------------
Confidence 98865 2 268888 8999855332 2222100
Q ss_pred CcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEE-EccccccCCcc
Q 005009 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALI-IEPVVHAAGGM 635 (719)
Q Consensus 557 ~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI-vEPViqg~gG~ 635 (719)
..++..+.+ ..|. +.+ .++.+|+ ..| +...|.
T Consensus 121 ---~~v~~~~~~-----------~~d~------------------~~l-------------~~~~~v~l~~p--~nptG~ 153 (335)
T 1uu1_A 121 ---LEVPLTKDL-----------RIPE------------------VNV-------------GEGDVVFIPNP--NNPTGH 153 (335)
T ss_dssp ---EECCCCTTS-----------CCCC------------------CCC-------------CTTEEEEEESS--CTTTCC
T ss_pred ---EEeccCCCC-----------CCCH------------------HHc-------------CCCCEEEEeCC--CCCCCC
Confidence 001110000 0010 001 1234555 677 566676
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccc-ccccCCCcceeeehhccC-CCccchheeEeCHHHHhhhc
Q 005009 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-ADLLGCVPDIACYGKLLT-GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 636 ~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a-~e~~gv~PDIvtlgK~Lg-gG~~Plsavl~~~~i~~~~~ 712 (719)
+. |.+.++++.++| | ++|+||++++|+. +.... .+.++....+.+++|.+| .| +++|++++++++++.+.
T Consensus 154 ~~-~~~~l~~l~~~~---~-~li~De~~~~~~~-~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~ 225 (335)
T 1uu1_A 154 VF-EREEIERILKTG---A-FVALDEAYYEFHG-ESYVDFLKKYENLAVIRTFSKAFSLAA-QRVGYVVASEKFIDAYN 225 (335)
T ss_dssp CC-CHHHHHHHHHTT---C-EEEEECTTHHHHC-CCCGGGGGTCSSEEEEEESTTTTTCGG-GCCEEEEECHHHHHHHH
T ss_pred CC-CHHHHHHHHHhC---C-EEEEECcchhhcc-hhHHHHhhhCCCEEEEecchhhcCCcc-cCeEEEEeCHHHHHHHH
Confidence 65 555555555555 8 8999999998753 22222 223333445568999998 78 79999999999988764
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=98.88 E-value=6.6e-09 Score=109.70 Aligned_cols=188 Identities=14% Similarity=0.047 Sum_probs=122.4
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccC
Q 005009 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~ 497 (719)
+|++++|+.+++.. +.. ....+...++.++|++..+.. .+.++++++|++|++.+++.+. +.
T Consensus 13 ~~~v~~a~~~~~~~--~~~--~~~~~~~~~l~~~la~~~g~~-~~~i~~~~g~t~a~~~~~~~~~-----~~-------- 74 (352)
T 1iug_A 13 HPKALEALARPQLH--HRT--EAAREVFLKARGLLREAFRTE-GEVLILTGSGTLAMEALVKNLF-----AP-------- 74 (352)
T ss_dssp CHHHHHHHHSCCCC--TTS--HHHHHHHHHHHHHHHHHHTCS-SEEEEEESCHHHHHHHHHHHHC-----CT--------
T ss_pred CHHHHHHhccCCCC--ccC--HHHHHHHHHHHHHHHHHhCCC-CceEEEcCchHHHHHHHHHhcc-----CC--------
Confidence 89999999988752 110 011234578889999988743 2589999999999999999872 11
Q ss_pred CCccccCcceEEEEEeCCcccCccccc-cccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccc
Q 005009 498 KDTTEKCIELKVLALKGSYHGDTLGAM-EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHK 576 (719)
Q Consensus 498 ~~~~~~~~r~kII~~~~syHG~t~gal-slt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~ 576 (719)
..+|++...+||+.....+ ...|.. ...++.+..+
T Consensus 75 --------gd~vl~~~~~~~~~~~~~~~~~~g~~----------------------------~~~v~~~~~~-------- 110 (352)
T 1iug_A 75 --------GERVLVPVYGKFSERFYEIALEAGLV----------------------------VERLDYPYGD-------- 110 (352)
T ss_dssp --------TCEEEEEECSHHHHHHHHHHHHTTCE----------------------------EEEEECCTTC--------
T ss_pred --------CCeEEEEeCCchhHHHHHHHHHcCCc----------------------------eEEEeCCCCC--------
Confidence 2479999999998641111 101100 0111111000
Q ss_pred cccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhc--C
Q 005009 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR--K 654 (719)
Q Consensus 577 ~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~--g 654 (719)
..|. +.++ . .++.+|+++.. +...|.+.+ +++|.++|++| |
T Consensus 111 ---~~d~------------------~~l~---------~--~~~~~v~~~~~-~nptG~~~~----l~~i~~l~~~~~~~ 153 (352)
T 1iug_A 111 ---TPRP------------------EDVA---------K--EGYAGLLLVHS-ETSTGALAD----LPALARAFKEKNPE 153 (352)
T ss_dssp ---CCCT------------------TTSC---------C--SSCSEEEEESE-ETTTTEECC----HHHHHHHHHHHCTT
T ss_pred ---CCCH------------------HHHh---------c--cCCcEEEEEEe-cCCcceecC----HHHHHHHHHhhCCC
Confidence 0010 1111 1 34567888887 888898877 89999999999 9
Q ss_pred CcEEEeccccCccccCccccccccCCCcceeee--hhccCCCccchheeEeCHHHHhh
Q 005009 655 IPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATNAVFDS 710 (719)
Q Consensus 655 ilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtl--gK~LggG~~Plsavl~~~~i~~~ 710 (719)
+++|+||+++ +|... +..+.+ .+|++++ +|.++|+ ..+|++++++++++.
T Consensus 154 ~~li~D~a~~-~~~~~--~~~~~~--~~d~~~~s~~K~~~~~-~g~G~~~~~~~~~~~ 205 (352)
T 1iug_A 154 GLVGADMVTS-LLVGE--VALEAM--GVDAAASGSQKGLMCP-PGLGFVALSPRALER 205 (352)
T ss_dssp CEEEEECTTT-BTTBC--CCSGGG--TCSEEEEESSSTTCCC-SCEEEEEECHHHHHT
T ss_pred CEEEEECCcc-ccCcc--eecccc--CeeEEEecCcccccCC-CceeEEEECHHHHHH
Confidence 9999999995 55432 222323 4788754 6988875 457899999998754
|
| >1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=2.7e-08 Score=100.24 Aligned_cols=87 Identities=16% Similarity=0.238 Sum_probs=67.7
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCC----CCHH
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGL----VNEV 295 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~----~~~~ 295 (719)
.+|+|||++.+++. .....++...+ .+|+|+.....++.++...++.++..+.++.|+|+|++.. ....
T Consensus 111 ~yD~viiD~~~~~~------~~~~~~~~~ad-~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~~~~~ 183 (237)
T 1g3q_A 111 KFDFILIDCPAGLQ------LDAMSAMLSGE-EALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRSDRDIPPE 183 (237)
T ss_dssp GCSEEEEECCSSSS------HHHHHHHTTCS-EEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSCTTCCCHH
T ss_pred cCCEEEEECCCCcC------HHHHHHHHHCC-eEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCcccchhHHH
Confidence 39999999987643 23344444444 6899999998999999999999998899999999999832 3456
Q ss_pred HHHHhhcCCCcEEe-cCCCCC
Q 005009 296 PLMSYLRNRVPVLV-LPPLPQ 315 (719)
Q Consensus 296 ~l~~~~~~~~pvlg-lP~~~~ 315 (719)
.+.+.+ +.|+++ ||+.+.
T Consensus 184 ~~~~~~--~~~~~~~Ip~~~~ 202 (237)
T 1g3q_A 184 AAEDVM--EVPLLAVIPEDPA 202 (237)
T ss_dssp HHHHHH--CSCEEEEEECCHH
T ss_pred HHHHHh--CccceeeCCCChH
Confidence 666666 899999 998654
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=98.85 E-value=1.5e-08 Score=113.53 Aligned_cols=167 Identities=11% Similarity=0.051 Sum_probs=112.1
Q ss_pred CChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCc
Q 005009 441 VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (719)
Q Consensus 441 ~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t 520 (719)
.++...+++++|++..+. +.+++++||++|+..+++++ +. ...||..+..||+..
T Consensus 131 g~~~~~~l~~~la~~~g~---~~~i~~~sGt~al~~~l~~~------~~----------------Gd~Vi~~~~~y~~~~ 185 (464)
T 1ibj_A 131 GNPTRDALESLLAKLDKA---DRAFCFTSGMAALSAVTHLI------KN----------------GEEIVAGDDVYGGSD 185 (464)
T ss_dssp CCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHTTS------CT----------------TCEEEEESSCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCC---CeEEEECCHHHHHHHHHHHh------CC----------------CCEEEEECCCchhHH
Confidence 456778899999998873 58899999999998777632 11 247888888888732
Q ss_pred cccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHH
Q 005009 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (719)
Q Consensus 521 ~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~ 600 (719)
..+... . +. . |...+.+| ..|
T Consensus 186 -~~~~~~--~--~~---------~-------------G~~v~~v~--------------~~d------------------ 206 (464)
T 1ibj_A 186 -RLLSQV--V--PR---------S-------------GVVVKRVN--------------TTK------------------ 206 (464)
T ss_dssp -HHHHHT--S--GG---------G-------------TCEEEEEC--------------TTS------------------
T ss_pred -HHHHHH--H--HH---------c-------------CCEEEEeC--------------CCC------------------
Confidence 211100 0 00 0 00011111 111
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC
Q 005009 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (719)
Q Consensus 601 ~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv 680 (719)
.+.+++.+. .++.+|++|.. ++..|.+.+ +++|.++|++||+++|+||+++. |..+..-. .
T Consensus 207 ~~~l~~~i~--------~~tk~v~l~~p-~NptG~v~~----l~~i~~la~~~gi~livDea~~~----g~~~~~~~--~ 267 (464)
T 1ibj_A 207 LDEVAAAIG--------PQTKLVWLESP-TNPRQQISD----IRKISEMAHAQGALVLVDNSIMS----PVLSRPLE--L 267 (464)
T ss_dssp HHHHHHHCC--------SSEEEEEECSS-CTTTCCCCC----HHHHHHHHHTTTCEEEEECTTTC----TTTCCGGG--T
T ss_pred HHHHHHHhc--------cCceEEEEeCC-CCCCCEeec----HHHHHHHHHHcCCEEEEECCCcc----cccCChhh--c
Confidence 245666663 36889999997 888898886 99999999999999999999963 22221111 3
Q ss_pred Cccee--eehhccCC--CccchheeEeCH-HHHhhh
Q 005009 681 VPDIA--CYGKLLTG--GVIPLAATLATN-AVFDSF 711 (719)
Q Consensus 681 ~PDIv--tlgK~Lgg--G~~Plsavl~~~-~i~~~~ 711 (719)
.+|++ +++|.++| | +++|++++++ ++.+.+
T Consensus 268 ~~div~~S~sK~~~g~~G-l~~G~l~~~~~~l~~~l 302 (464)
T 1ibj_A 268 GADIVMHSATKFIAGHSD-VMAGVLAVKGEKLAKEV 302 (464)
T ss_dssp TCSEEEEETTTTTTCSSC-CCCEEEEECSHHHHHHH
T ss_pred CCEEEEECCcccccCCCC-CcEEEEEEChHHHHHHH
Confidence 47887 59999987 7 6889999984 776654
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=7.1e-08 Score=104.16 Aligned_cols=218 Identities=12% Similarity=0.050 Sum_probs=128.7
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhccc-ccCCCCCChHHHHHHHHHHhccCCC-CCCeEEEeCChHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH-VMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIA 477 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~-~~~~~~~~~~~~~Lae~L~~~~~~~-~~~rv~f~~SGsEA~E~A 477 (719)
.++|+..|.. .++ . +|.+.+|+.++++.... ........+....+++.+....+.. ..+.++++++|++|++.+
T Consensus 32 ~~i~l~~~~~--~~~-~-~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~ 107 (385)
T 1b5p_A 32 DLVALTAGEP--DFD-T-PEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNL 107 (385)
T ss_dssp CCEECCCSSC--SSC-C-CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHH
T ss_pred CEEEecCCCC--CCC-C-CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHHH
Confidence 5667665432 233 2 68999999988765211 1111123345556666665533311 135799999999999999
Q ss_pred HHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccC
Q 005009 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (719)
Q Consensus 478 lKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (719)
++... .. ..+|+....+|++.... ....|..
T Consensus 108 ~~~l~-----~~----------------gd~Vlv~~p~y~~~~~~-~~~~g~~--------------------------- 138 (385)
T 1b5p_A 108 FQAIL-----DP----------------GDEVIVLSPYWVSYPEM-VRFAGGV--------------------------- 138 (385)
T ss_dssp HHHHC-----CT----------------TCEEEEEESCCTHHHHH-HHHTTCE---------------------------
T ss_pred HHHhc-----CC----------------CCEEEEcCCCchhHHHH-HHHcCCE---------------------------
Confidence 98761 11 24788888888763321 1111100
Q ss_pred cceeecCc--chhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEE-EEEccccccCCc
Q 005009 558 SKWILSLP--EWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGA-LIIEPVVHAAGG 634 (719)
Q Consensus 558 ~~~~~~~P--~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAA-vIvEPViqg~gG 634 (719)
...++.. +.| . -| .+.+++.+. .++.+ ++..|- .-.|
T Consensus 139 -~~~v~~~~~~~~------------~---------~d--------~~~l~~~l~--------~~~~~v~~~~p~--NPtG 178 (385)
T 1b5p_A 139 -VVEVETLPEEGF------------V---------PD--------PERVRRAIT--------PRTKALVVNSPN--NPTG 178 (385)
T ss_dssp -EEEEECCGGGTT------------C---------CC--------HHHHHTTCC--------TTEEEEEEESSC--TTTC
T ss_pred -EEEeecCcccCC------------C---------CC--------HHHHHHhcC--------CCCEEEEEeCCC--CCCC
Confidence 0111111 000 0 01 244554443 23444 445673 4445
Q ss_pred cccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee--eehhccC-CCccchheeEeCHHHHhhh
Q 005009 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLT-GGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 635 ~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlgK~Lg-gG~~Plsavl~~~~i~~~~ 711 (719)
.+. |.+.+++|.++|++||+++|+||++..|...|.......+.-..+++ +++|.+| .| +.+|++++++++++.+
T Consensus 179 ~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G-~RiG~~~~~~~~~~~l 256 (385)
T 1b5p_A 179 AVY-PKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTG-WRIGYACGPKEVIKAM 256 (385)
T ss_dssp CCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGG-GCCEEEECCHHHHHHH
T ss_pred CCc-CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCCCCEEEEEechhhcCCcc-cceEEEEeCHHHHHHH
Confidence 443 78999999999999999999999998775444322222221122343 7899998 68 7899999999987765
Q ss_pred c
Q 005009 712 V 712 (719)
Q Consensus 712 ~ 712 (719)
.
T Consensus 257 ~ 257 (385)
T 1b5p_A 257 A 257 (385)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.1e-08 Score=111.25 Aligned_cols=217 Identities=12% Similarity=0.040 Sum_probs=126.8
Q ss_pred eeeeccccccccCCC-CCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhcc-CCCC----CCeEEE--eCChH
Q 005009 400 QQFDACASWWTQGPD-ATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGV-GKGW----ASRAYF--SDNGS 471 (719)
Q Consensus 400 ~yLD~~sg~~~~~lG-H~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~-~~~~----~~rv~f--~~SGs 471 (719)
.+|||.+|. +++ .+ +|.+.++++++.....+... ...-..+|.+.++++. +... -+++.+ +++|+
T Consensus 42 ~~i~l~~g~---~~d~~~-~~~v~~a~~~a~~~~~~~y~---~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ 114 (409)
T 4eu1_A 42 RKVNLSIGV---YRDDAD-QPFVLECVKQATLGTNMDYA---PVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGT 114 (409)
T ss_dssp SCEECCCSS---CCCTTS-CCCCCHHHHTCCCCSCCCCC---CTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHH
T ss_pred CceeeeeeE---EECCCC-CEeecHHHHhcCccccccCC---CCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccch
Confidence 577877643 333 34 78899999887432222111 1111235555555543 2110 145644 89999
Q ss_pred HHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCC
Q 005009 472 TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPP 551 (719)
Q Consensus 472 EA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p 551 (719)
+|++.+..++ +.+... ..+|+....+|++.... +...|..
T Consensus 115 ga~~~~~~~~-~~~~~~-----------------gd~Vlv~~p~y~~~~~~-~~~~g~~--------------------- 154 (409)
T 4eu1_A 115 GALRIGGDLL-NRFVAN-----------------CNRIYGPDVGYPNHESI-FAKAGME--------------------- 154 (409)
T ss_dssp HHHHHHHHHG-GGTSSS-----------------CCEEEEESSCCTHHHHH-HHHTTCE---------------------
T ss_pred HHHHHHHHHH-HHhcCC-----------------CCEEEEeCCCcHhHHHH-HHHcCCe---------------------
Confidence 9999998876 444321 14788888888764322 2222210
Q ss_pred cccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEE-ccccc
Q 005009 552 TVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALII-EPVVH 630 (719)
Q Consensus 552 ~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIv-EPViq 630 (719)
.+.+| ..+.+ .+ .-| .+.+++.+.+ .+.+.+.+++ .| +
T Consensus 155 ---------~~~~~--------------~~~~~-~~--~~d--------~~~l~~~l~~-----~~~~~~~i~~~~p--~ 193 (409)
T 4eu1_A 155 ---------LTPYS--------------YYDPA-TK--GLN--------LAGMLECLDK-----APEGSVILVHACA--H 193 (409)
T ss_dssp ---------EEEEC--------------CEETT-TT--EEC--------HHHHHHHHHH-----SCTTCEEEEESSS--C
T ss_pred ---------EEEEE--------------eecCc-CC--cCc--------HHHHHHHHHh-----CCCCcEEEEECCC--C
Confidence 11111 00000 00 001 3567777763 1233445554 56 5
Q ss_pred cCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc---cccccc-cCCCccee---eehhccC-CCccchhee-
Q 005009 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV---ETTADL-LGCVPDIA---CYGKLLT-GGVIPLAAT- 701 (719)
Q Consensus 631 g~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~---~~a~e~-~gv~PDIv---tlgK~Lg-gG~~Plsav- 701 (719)
.-.|.+. +.+.+++|.++|++||+++|+||++.+|+..+. .+.... .+..++++ +++|.+| .| +.+|++
T Consensus 194 NPtG~~~-~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~riG~~~ 271 (409)
T 4eu1_A 194 NPTGVDP-THDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGLYG-HRCGALH 271 (409)
T ss_dssp TTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSSCGG-GCCEEEE
T ss_pred CCCCCCC-CHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCcccccCcc-CCceEEE
Confidence 6566544 788899999999999999999999999877662 233332 35567765 7999998 68 688984
Q ss_pred --EeCHH
Q 005009 702 --LATNA 706 (719)
Q Consensus 702 --l~~~~ 706 (719)
+.+++
T Consensus 272 ~v~~~~~ 278 (409)
T 4eu1_A 272 ISTASAE 278 (409)
T ss_dssp EECSSHH
T ss_pred EEeCCHH
Confidence 66677
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.82 E-value=8.7e-08 Score=100.71 Aligned_cols=205 Identities=9% Similarity=0.079 Sum_probs=132.1
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlK 479 (719)
++||+.++. +++| - +|++.+|+.++++.+.. +..+...+|.++|++.++.. .+.++|++++++|+..+++
T Consensus 17 ~~i~l~~n~--~~~~-~-~~~v~~a~~~~~~~~~~-----y~~~~~~~lr~~la~~~~~~-~~~i~~t~G~~~~l~~~~~ 86 (337)
T 3p1t_A 17 QAVCLAFNE--NPEA-V-EPRVQAAIAAAAARINR-----YPFDAEPRVMRKLAEHFSCP-EDNLMLVRGIDECFDRISA 86 (337)
T ss_dssp CCEECSSCC--CCSC-C-CHHHHHHHHHHGGGTTS-----CCTTHHHHHHHHHHHHHTSC-GGGEEEESHHHHHHHHHHH
T ss_pred CceEeeCCC--CCCC-C-CHHHHHHHHHhhhhhcc-----CCCCchHHHHHHHHHHhCcC-HHHEEEeCCHHHHHHHHHH
Confidence 789988854 4566 4 79999999998876432 23456778889999887643 3589999999999998887
Q ss_pred HHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcc
Q 005009 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (719)
Q Consensus 480 lA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (719)
.. .| .+|+..+.+|++.... +...|.. .
T Consensus 87 ~~-------~g----------------d~vl~~~p~~~~~~~~-~~~~g~~----------------------------~ 114 (337)
T 3p1t_A 87 EF-------SS----------------MRFVTAWPGFDGYRAR-IAVSGLR----------------------------H 114 (337)
T ss_dssp HS-------TT----------------SEEEEESSSCSHHHHH-HTTSCCE----------------------------E
T ss_pred hc-------CC----------------CeEEEeCCCcHHHHHH-HHHcCCE----------------------------E
Confidence 64 12 2688888888874322 1111100 0
Q ss_pred eeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCC
Q 005009 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (719)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (719)
..++..+.+. .| .+.+++. .+..++++.-. +...|.+.+
T Consensus 115 ~~v~~~~~~~-----------~d------------------~~~l~~~----------~~~~~v~i~~p-~nptG~~~~- 153 (337)
T 3p1t_A 115 FEIGLTDDLL-----------LD------------------PNDLAQV----------SRDDCVVLANP-SNPTGQALS- 153 (337)
T ss_dssp EEECBCTTSS-----------BC------------------HHHHTTC----------CTTEEEEEESS-CTTTCCCCC-
T ss_pred EEecCCCCCC-----------CC------------------HHHHHhh----------cCCCEEEEeCC-CCCCCCCCC-
Confidence 1111111000 01 1223211 12345666554 677888887
Q ss_pred HHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccC-CCccchheeEeCHHHHhhhcC
Q 005009 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT-GGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 640 ~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lg-gG~~Plsavl~~~~i~~~~~~ 713 (719)
.+++.++|+++++ +|+||++.+|+..+.... ...+..--+.+++|.+| .| +.+|.+++++++.+.+..
T Consensus 154 ---~~~l~~l~~~~~~-~ivDea~~~~~~~~~~~~-~~~~~~i~~~S~sK~~g~~G-~r~G~~~~~~~~~~~l~~ 222 (337)
T 3p1t_A 154 ---AGELDQLRQRAGK-LLIDETYVDYSSFRARGL-AYGENELVFRSFSKSYGLAG-LRLGALFGPSELIAAMKR 222 (337)
T ss_dssp ---HHHHHHHHHHCSE-EEEECTTGGGSSCSSSCC-CCBTTEEEEEESSSTTCCTT-TCCEEEECCHHHHHHHHT
T ss_pred ---HHHHHHHHHhCCc-EEEECCChhhcccccccc-ccCCCEEEEeeCchhccCcc-hheEEEEeCHHHHHHHHh
Confidence 7789999999997 666999998876554221 11111112337899998 78 689999999999888754
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=4.5e-08 Score=107.28 Aligned_cols=169 Identities=8% Similarity=-0.035 Sum_probs=115.6
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
...+...+|.++|+++.+. +.+++++||++|+..+++... +. ...||.....|++.
T Consensus 59 ~~~~~~~~l~~~ia~~~g~---~~~i~~~~g~~ai~~~~~~l~-----~~----------------gd~Vl~~~~~y~~~ 114 (404)
T 1e5e_A 59 LGNPTVSNLEGKIAFLEKT---EACVATSSGMGAIAATVLTIL-----KA----------------GDHLISDECLYGCT 114 (404)
T ss_dssp TCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHC-----CT----------------TCEEEEESCCCHHH
T ss_pred CcChHHHHHHHHHHHHhCC---CcEEEeCChHHHHHHHHHHHh-----CC----------------CCEEEEeCCCchhH
Confidence 3467777899999998873 588999999999999998651 11 13688888877763
Q ss_pred ccc---cccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhH
Q 005009 520 TLG---AMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDL 596 (719)
Q Consensus 520 t~g---alslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~ 596 (719)
... .+...| ...+.+| .+|
T Consensus 115 ~~~~~~~~~~~g------------------------------~~~~~v~--------------~~d-------------- 136 (404)
T 1e5e_A 115 HALFEHALTKFG------------------------------IQVDFIN--------------TAI-------------- 136 (404)
T ss_dssp HHHHHTHHHHTT------------------------------CEEEEEC--------------TTS--------------
T ss_pred HHHHHHHHHHcC------------------------------CEEEEEC--------------CCC--------------
Confidence 220 111111 0011111 111
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHh-cCCcEEEeccccCccccCccccc
Q 005009 597 ASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN-RKIPVIFDEVFTGFWRLGVETTA 675 (719)
Q Consensus 597 ~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k-~gilLI~DEVqTGfGRtG~~~a~ 675 (719)
.+.+++.+. .++.+|++|.. +...|.+.+ +++|.++|++ ||+++|+||+++.+.. ...+
T Consensus 137 ----~~~l~~~i~--------~~t~~v~l~~p-~NptG~v~~----l~~i~~la~~~~~~~li~De~~~~~~~-~~~~-- 196 (404)
T 1e5e_A 137 ----PGEVKKHMK--------PNTKIVYFETP-ANPTLKIID----MERVCKDAHSQEGVLVIADNTFCSPMI-TNPV-- 196 (404)
T ss_dssp ----TTHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHHTSTTCEEEEECTTTCTTT-CCGG--
T ss_pred ----HHHHHHhcC--------CCCcEEEEECC-CCCCCcccC----HHHHHHHHHhhcCCEEEEECCCchhhh-CCcc--
Confidence 134555553 35789999987 888898886 9999999999 9999999999986532 2222
Q ss_pred cccCCCccee--eehhccCCCccch-heeEeCHHHHh-hhcC
Q 005009 676 DLLGCVPDIA--CYGKLLTGGVIPL-AATLATNAVFD-SFVG 713 (719)
Q Consensus 676 e~~gv~PDIv--tlgK~LggG~~Pl-savl~~~~i~~-~~~~ 713 (719)
.+ ..|++ +++|.+++.-.++ |++++++++++ .+..
T Consensus 197 -~~--~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~ 235 (404)
T 1e5e_A 197 -DF--GVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMV 235 (404)
T ss_dssp -GG--TCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHT
T ss_pred -cc--CCEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHH
Confidence 13 36766 6999998633687 99999999887 6643
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=98.80 E-value=1.9e-08 Score=110.39 Aligned_cols=169 Identities=9% Similarity=0.037 Sum_probs=112.8
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
+.++...+|.++|+++.+. +..++++||++|+..+++ .. +. ...||+.+..|||.
T Consensus 64 ~~~p~~~~l~~~la~~~g~---~~~i~~~sG~~ai~~~~~-l~-----~~----------------gd~Vl~~~~~y~~~ 118 (403)
T 3cog_A 64 SGNPTRNCLEKAVAALDGA---KYCLAFASGLAATVTITH-LL-----KA----------------GDQIICMDDVYGGT 118 (403)
T ss_dssp --CHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHT-TS-----CT----------------TCEEEEESSCCHHH
T ss_pred CCCchHHHHHHHHHHHhCC---CcEEEECCHHHHHHHHHH-Hh-----CC----------------CCEEEEeCCCcchH
Confidence 3467778999999998874 467788899999999888 41 11 24789999988884
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
......+.. . . |.....+| .+|
T Consensus 119 ~~~~~~~~~-----~---------~-------------G~~v~~v~--------------~~d----------------- 140 (403)
T 3cog_A 119 NRYFRQVAS-----E---------F-------------GLKISFVD--------------CSK----------------- 140 (403)
T ss_dssp HHHHHHTGG-----G---------G-------------TCEEEEEC--------------TTS-----------------
T ss_pred HHHHHHHHH-----H---------c-------------CCEEEEEC--------------CCC-----------------
Confidence 221110100 0 0 00001111 111
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcC-CcEEEeccccCccccCcccccccc
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK-IPVIFDEVFTGFWRLGVETTADLL 678 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~g-ilLI~DEVqTGfGRtG~~~a~e~~ 678 (719)
.+.+++.+. .++.+|++|.. +...|.+.+ +++|.++|++|| +++|+||+++++. .+.. +
T Consensus 141 -~~~l~~~i~--------~~t~~v~~~~p-~nptG~~~~----l~~i~~la~~~g~~~livD~~~~~~~-~~~~-----~ 200 (403)
T 3cog_A 141 -IKLLEAAIT--------PETKLVWIETP-TNPTQKVID----IEGCAHIVHKHGDIILVVDNTFMSPY-FQRP-----L 200 (403)
T ss_dssp -HHHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHTSSSCCEEEEECTTTCTT-TCCT-----T
T ss_pred -HHHHHHhcC--------cCCeEEEEECC-CCCCCeeeC----HHHHHHHHHHcCCCEEEEECCCcccc-cCCc-----c
Confidence 245666653 36789999987 888898886 999999999999 9999999998642 2222 2
Q ss_pred CCCccee--eehhccCC-CccchheeEeC-HHHHhhh
Q 005009 679 GCVPDIA--CYGKLLTG-GVIPLAATLAT-NAVFDSF 711 (719)
Q Consensus 679 gv~PDIv--tlgK~Lgg-G~~Plsavl~~-~~i~~~~ 711 (719)
+..+|++ +++|.++| |-..+|+++++ +++.+.+
T Consensus 201 ~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l 237 (403)
T 3cog_A 201 ALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRL 237 (403)
T ss_dssp TTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHH
T ss_pred ccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHH
Confidence 3468988 78999985 32567888885 7776654
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=98.80 E-value=3e-09 Score=116.74 Aligned_cols=102 Identities=8% Similarity=0.061 Sum_probs=76.4
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHH-hcCCcEEEecccc--CccccCccc-cc--
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQ-NRKIPVIFDEVFT--GFWRLGVET-TA-- 675 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~-k~gilLI~DEVqT--GfGRtG~~~-a~-- 675 (719)
+.+++.+.+ .++.+|++.|..+.-.|. ..|.+++++|.++|+ +||+++|+||++. +|+..|..+ ..
T Consensus 168 ~~l~~~l~~-------~~~~~v~~~~~~~NPtG~-~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~ 239 (422)
T 3d6k_A 168 GVVRELVKD-------PQVKGMWTVPVFGNPTGV-TFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIE 239 (422)
T ss_dssp HHHHHHHTS-------TTEEEEEECCSSCTTTCC-CCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHH
T ss_pred HHHHHHHhc-------CCCeEEEEcCCCCCCCCC-CCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhh
Confidence 566777642 357788877754565676 458999999999999 9999999999996 576666322 22
Q ss_pred -----cccCCCcceeeehhccCCCccchheeEeCHHHHhhhc
Q 005009 676 -----DLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 676 -----e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
+..+...++.+++|.++.| +++|++++++++++.+.
T Consensus 240 ~~~~~~~~~~~i~~~S~SK~~~~G-lriG~~~~~~~l~~~l~ 280 (422)
T 3d6k_A 240 FAQAAGNPNRFWFMSSTSKITHAG-SGVSFFASSKENIEWYA 280 (422)
T ss_dssp HHHHTTCTTCEEEEEESTTTSCTT-SSCEEEECCHHHHHHHH
T ss_pred HhhccCCCCcEEEEcChhhhcCcc-cceEEEEeCHHHHHHHH
Confidence 2344556677999997778 79999999999988764
|
| >1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=98.78 E-value=1.9e-07 Score=95.68 Aligned_cols=86 Identities=14% Similarity=0.185 Sum_probs=65.0
Q ss_pred CcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCCC----HHH
Q 005009 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVN----EVP 296 (719)
Q Consensus 221 ~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~~~----~~~ 296 (719)
+|+|||++.+|+. .....++...+ .||+|+.....++.++...++.++..+.++.|+|+|++.... ...
T Consensus 111 yD~viiD~~~~~~------~~~~~~~~~ad-~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~~~~~~~ 183 (263)
T 1hyq_A 111 TDILLLDAPAGLE------RSAVIAIAAAQ-ELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTLGIEMAKNE 183 (263)
T ss_dssp CSEEEEECCSSSS------HHHHHHHHHSS-EEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTTTHHHHHHH
T ss_pred CCEEEEeCCCCCC------hHHHHHHHHCC-EEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCcccccchHHH
Confidence 9999999987643 22344444444 788999988889999999999998888899999999984432 234
Q ss_pred HHHhhcCCCcEEe-cCCCCC
Q 005009 297 LMSYLRNRVPVLV-LPPLPQ 315 (719)
Q Consensus 297 l~~~~~~~~pvlg-lP~~~~ 315 (719)
+.+.+ ++|+++ ||+.+.
T Consensus 184 ~~~~~--~~~~~~~Ip~~~~ 201 (263)
T 1hyq_A 184 IEAIL--EAKVIGLIPEDPE 201 (263)
T ss_dssp HHHHT--TSCEEEEEECCHH
T ss_pred HHHHh--CCCeEEECCCCHH
Confidence 44445 899999 998654
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=8.8e-08 Score=105.76 Aligned_cols=206 Identities=13% Similarity=0.007 Sum_probs=121.9
Q ss_pred CHHHHHHHHHhhhh---cccccCCCCCChHHHHHHHHHHhccCCCCCCeEEE---eCChHHHHHHHHHHHHHHhhccccc
Q 005009 418 QIELARDMGYTAAR---FGHVMFPENVYEPALECAELLLQGVGKGWASRAYF---SDNGSTAIEIALKMAFRKFSFDHEV 491 (719)
Q Consensus 418 hP~V~~Av~~q~~~---~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f---~~SGsEA~E~AlKlA~r~~~~~~G~ 491 (719)
+++|.+|+.+..-. +.......+......+|.++++++.+. +.+++ ++||++|+..+++..+ +.|
T Consensus 31 ~~~vl~a~~~~~~~~~~~~~~~~~~y~~~~~~~Le~~lA~l~g~---e~alv~p~~~sGt~Ai~~al~all-----~~G- 101 (409)
T 3jzl_A 31 QAKVLDAFQENKVSDFHFHPSTGYGYDDEGRDTLERVYATVFKT---EAALVRPQIISGTHAISTVLFGIL-----RPD- 101 (409)
T ss_dssp HHHHHHHHHHTTCCGGGGCCCCTTCTTCHHHHHHHHHHHHHHTC---SEEEEETTSCSHHHHHHHHHHHHC-----CTT-
T ss_pred HHHHHHHHHHhhhhhhccCCCcCCCCChhHHHHHHHHHHHHhCC---CcEEEECCCccHHHHHHHHHHHhc-----CCC-
Confidence 77888998876422 222222234455677899999999874 45555 8999999999988651 122
Q ss_pred cccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhc
Q 005009 492 LVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSK 571 (719)
Q Consensus 492 ~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~ 571 (719)
..||+.++..|+.+...+.+++.. ... ....+. ....++....+
T Consensus 102 ---------------D~Vl~~~~~~y~~~~~~~~~~g~~--~~~-----l~~~G~-----------~~~~v~~~~~g--- 145 (409)
T 3jzl_A 102 ---------------DELLYITGQPYDTLEEIVGIRKQG--QGS-----LKDFHI-----------GYSSVPLLENG--- 145 (409)
T ss_dssp ---------------CEEEECSSSCCTTHHHHHTSSSSS--SSC-----TGGGTC-----------EEEECCCCTTS---
T ss_pred ---------------CEEEEeCCCCcHhHHHHHhcccch--hhH-----HHHcCC-----------EEEEeCCCCCC---
Confidence 367777634444443222222210 000 000000 00111110000
Q ss_pred ccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcc----ccccCCccccCCHHHHHHHH
Q 005009 572 IVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEP----VVHAAGGMHMVDPLFQRILV 647 (719)
Q Consensus 572 ~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEP----Viqg~gG~~~pp~~fl~~Lr 647 (719)
..| .+.+++.+. .+..+|++|. . .+..|.+.+ +++|.
T Consensus 146 ------------------~~d--------~e~l~~ai~--------~~tklV~i~~s~g~p-~nptg~v~~----l~~I~ 186 (409)
T 3jzl_A 146 ------------------DVD--------FPRIAKKMT--------PKTKMIGIQRSRGYA-DRPSFTIEK----IKEMI 186 (409)
T ss_dssp ------------------CCC--------HHHHHHHCC--------TTEEEEEEECSCTTS-SSCCCCHHH----HHHHH
T ss_pred ------------------CcC--------HHHHHHhcc--------CCCeEEEEECCCCCC-CCCcCcccc----HHHHH
Confidence 001 255666664 3578999998 6 666676654 99999
Q ss_pred HHHHh--cCCcEEEeccccCccccCccccccccCCCccee--eehhccCCCccc-hheeEeCHHHHhhhc
Q 005009 648 KECQN--RKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIP-LAATLATNAVFDSFV 712 (719)
Q Consensus 648 ~Lc~k--~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlgK~LggG~~P-lsavl~~~~i~~~~~ 712 (719)
++|++ ||+++|+||++.-+ ..+ .+......||+ +++|.+||+..| .|.+++++++++.+.
T Consensus 187 ~la~~~~~~~~livD~a~~~~-~~~----~~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~ 251 (409)
T 3jzl_A 187 VFVKNINPEVIVFVDNCYGEF-VEY----QEPPEVGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCG 251 (409)
T ss_dssp HHHHHHCTTCEEEEECTTCTT-TSS----CCSGGGTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHH
T ss_pred HHHHhhCCCCEEEEeCCcccc-ccc----CCccccCCeEEEECccccCCccCCceEEEEEeCHHHHHHHH
Confidence 99999 99999999998522 211 11112345887 689999875345 467889999888764
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=98.75 E-value=5.1e-08 Score=108.12 Aligned_cols=94 Identities=13% Similarity=0.148 Sum_probs=64.4
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc---ccccccc
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV---ETTADLL 678 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~---~~a~e~~ 678 (719)
+.+++.+.+ .+.+...+++... +...|.+ .+.+.+++|.++|++||+++|+||++.+|+..+. .+....+
T Consensus 190 e~l~~~l~~-----~~~~~~~v~~~~p-~NPtG~~-~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~ 262 (448)
T 3meb_A 190 SNTKKDIQS-----APEKSIFLFHACA-HNPSGID-FTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMF 262 (448)
T ss_dssp HHHHHHHHH-----SCTTCEEEEESSS-CTTTCCC-CCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHH
T ss_pred HHHHHHHHh-----CCCCcEEEEeCCC-CCCCCcC-CCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHH
Confidence 556677763 2233444444432 5666765 4788899999999999999999999999977652 2333322
Q ss_pred -CCCcc---eeeehhccC-CCccchhee--Ee
Q 005009 679 -GCVPD---IACYGKLLT-GGVIPLAAT--LA 703 (719)
Q Consensus 679 -gv~PD---IvtlgK~Lg-gG~~Plsav--l~ 703 (719)
+..++ +.+++|.+| .| +.+|++ ++
T Consensus 263 ~~~~~~~i~~~S~SK~~g~~G-~RiG~l~~v~ 293 (448)
T 3meb_A 263 VDAGVEVLVAQSFSKNFGLYG-ERIGCLHVVH 293 (448)
T ss_dssp HHTTCCEEEEEECTTTSCCGG-GCCEEEEEEC
T ss_pred hhcCCcEEEEecccccCCCcc-ccceeeeeee
Confidence 23455 347999998 57 688887 55
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=98.74 E-value=4.4e-08 Score=108.79 Aligned_cols=164 Identities=14% Similarity=0.066 Sum_probs=108.5
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
+.++...+|.++|+++.+. +.+++++||++|+..|++... +. ...||+.+..|+|.
T Consensus 79 ~~~p~~~~le~~lA~l~g~---~~~v~~~sG~~Ai~~al~al~-----~~----------------Gd~Vi~~~~~y~~~ 134 (430)
T 3ri6_A 79 SSNPTVEDLEQRLKNLTGA---LGVLALGSGMAAISTAILTLA-----RA----------------GDSVVTTDRLFGHT 134 (430)
T ss_dssp -CCHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHHHHC-----CT----------------TCEEEEETTCCHHH
T ss_pred CCCHHHHHHHHHHHHHHCC---CcEEEECCHHHHHHHHHHHHh-----CC----------------CCEEEEcCCCchhH
Confidence 4578889999999999874 568899999999999998761 11 24788888888763
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
......... . . |.....+| .+|
T Consensus 135 ~~~~~~~~~-----~---------~-------------G~~~~~v~--------------~~d----------------- 156 (430)
T 3ri6_A 135 LSLFQKTLP-----S---------F-------------GIEVRFVD--------------VMD----------------- 156 (430)
T ss_dssp HHHHHTHHH-----H---------T-------------TCEEEEEC--------------TTC-----------------
T ss_pred HHHHHHHHH-----H---------c-------------CCEEEEeC--------------CCC-----------------
Confidence 321100000 0 0 00001111 111
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccC
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~g 679 (719)
.+.+++.+. .++.+|++|.. ++..|.+.+ +++|.++|++||++||+||+++ +|.++....+|
T Consensus 157 -~~~l~~ai~--------~~t~~v~~e~p-~NptG~~~d----l~~i~~la~~~g~~livD~a~~----~~~~~~~~~~g 218 (430)
T 3ri6_A 157 -SLAVEHACD--------ETTKLLFLETI-SNPQLQVAD----LEALSKVVHAKGIPLVVDTTMT----PPYLLEAKRLG 218 (430)
T ss_dssp -HHHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHHTTTCCEEEECTTS----CTTTCCGGGGT
T ss_pred -HHHHHHhhC--------CCCeEEEEECC-CCCCCeecC----HHHHHHHHHHcCCEEEEECCCc----ccccCChHHcC
Confidence 245666664 36789999987 888898887 8999999999999999999996 34444444556
Q ss_pred CCcceeeehhccCCCccchheeEe
Q 005009 680 CVPDIACYGKLLTGGVIPLAATLA 703 (719)
Q Consensus 680 v~PDIvtlgK~LggG~~Plsavl~ 703 (719)
....+.+++|.++|.-..++++++
T Consensus 219 ~div~~S~sK~l~g~g~~~gG~vv 242 (430)
T 3ri6_A 219 VDIEVLSSTKFISGGGTSVGGVLI 242 (430)
T ss_dssp CSEEEEECCCEEETTEEECCEEEE
T ss_pred CEEEEECCcccccCCCCceEEEEE
Confidence 544444678999873245555555
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=2.7e-08 Score=107.89 Aligned_cols=87 Identities=11% Similarity=0.032 Sum_probs=62.5
Q ss_pred cEEE-EEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceee--ehhccCCCc
Q 005009 619 CIGA-LIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGV 695 (719)
Q Consensus 619 ~iAA-vIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvt--lgK~LggG~ 695 (719)
++.+ |+++.. ++.+|. +...+++|.++|++||+++|+||++.-+ ..|...........+|+++ ++|.|+|
T Consensus 140 ~~~~~v~~~~p-~nptG~---~~~~l~~i~~l~~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~di~~~S~sK~l~g-- 212 (374)
T 2aeu_A 140 KDTLVIITGST-MDLKVI---ELENFKKVINTAKNKEAIVFVDDASGAR-VRLLFNQPPALKLGADLVVTSTDKLMEG-- 212 (374)
T ss_dssp TTEEEEEECBC-TTSCBC---CHHHHHHHHHHHHHHTCCEEEECTTHHH-HHHHTTCCCHHHHTCSEEEEETTSSSSS--
T ss_pred CccEEEEEccC-CCCCCC---CcccHHHHHHHHHHcCCEEEEECCcccc-cccccccCCccccCCcEEEecCcccccC--
Confidence 5678 999986 888785 5677999999999999999999987432 2111110001123468884 9999875
Q ss_pred cchheeEeCHHHHhhhc
Q 005009 696 IPLAATLATNAVFDSFV 712 (719)
Q Consensus 696 ~Plsavl~~~~i~~~~~ 712 (719)
..+|.+++++++++.+.
T Consensus 213 ~~~G~~~~~~~~~~~l~ 229 (374)
T 2aeu_A 213 PRGGLLAGKKELVDKIY 229 (374)
T ss_dssp CSCEEEEEEHHHHHHHH
T ss_pred cceEEEEECHHHHHHHH
Confidence 37888999999887653
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.3e-07 Score=106.55 Aligned_cols=100 Identities=10% Similarity=0.092 Sum_probs=70.6
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC-
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC- 680 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv- 680 (719)
+.|++.|.+.. ..+.++++|++.-. ....|.+.+ +++|.++|++||++|++|+++.|+......+.....|+
T Consensus 230 ~~L~~~i~~~~--~~g~~~~~V~~~~~-~~~tG~i~~----l~~I~~la~~~g~~lhvD~a~~~~~~~~~~~~~~~~g~~ 302 (504)
T 2okj_A 230 ADFEAKILEAK--QKGYVPFYVNATAG-TTVYGAFDP----IQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIE 302 (504)
T ss_dssp HHHHHHHHHHH--HTTCEEEEEEECBS-CSSSCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGG
T ss_pred HHHHHHHHHHH--HCCCCceEEEEeCC-CCCCCCcCC----HHHHHHHHHHcCCEEEEehhhhhHHHhCHhhHhhcCCcc
Confidence 44555554210 11335778888664 666788776 99999999999999999999988754433333333455
Q ss_pred Ccceeeeh--hccCCCccchheeEeCH-HHHh
Q 005009 681 VPDIACYG--KLLTGGVIPLAATLATN-AVFD 709 (719)
Q Consensus 681 ~PDIvtlg--K~LggG~~Plsavl~~~-~i~~ 709 (719)
.+|+++++ |.+++. +++|++++++ +++.
T Consensus 303 ~~D~i~~~~hK~~~~p-~~~g~l~~~~~~~~~ 333 (504)
T 2okj_A 303 RANSVTWNPHKMMGVL-LQCSAILVKEKGILQ 333 (504)
T ss_dssp GCSEEEECTTSTTCCC-SCCEEEEESSTTHHH
T ss_pred cCCEEEECchhhcCCC-cceEEEEEECHHHHH
Confidence 68999875 998877 5899999987 4654
|
| >3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=98.71 E-value=6e-07 Score=90.65 Aligned_cols=101 Identities=8% Similarity=0.052 Sum_probs=73.1
Q ss_pred CCHHHHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHH
Q 005009 192 VGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAY 271 (719)
Q Consensus 192 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~ 271 (719)
+..+.+.+.+..+... +|+|||.+.+++. .....+....+ -+|+|+.....++..+...+
T Consensus 103 ~~~~~l~~~l~~l~~~-------------yD~viiD~p~~~~------~~~~~~l~~ad-~viiv~~~~~~~~~~~~~~~ 162 (245)
T 3ea0_A 103 IEPERVSDLIHIAASF-------------YDYIIVDFGASID------HVGVWVLEHLD-ELCIVTTPSLQSLRRAGQLL 162 (245)
T ss_dssp CCHHHHHHHHHHHHHH-------------CSEEEEEEESSCC------TTHHHHGGGCS-EEEEEECSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhh-------------CCEEEEeCCCCCc------hHHHHHHHHCC-EEEEEecCcHHHHHHHHHHH
Confidence 3455666666665543 9999999977552 12333444433 37788888888899999999
Q ss_pred HHHHhCC--CcEEEEEEccCC---CCCHHHHHHhhcCCCcEEe-cCCCC
Q 005009 272 ESLKLRG--YDVVAVVFEDHG---LVNEVPLMSYLRNRVPVLV-LPPLP 314 (719)
Q Consensus 272 ~~l~~~~--~~v~gvi~N~~~---~~~~~~l~~~~~~~~pvlg-lP~~~ 314 (719)
+.++..+ ....|+|+|++. ....+.+++.+ +.|+++ +|+..
T Consensus 163 ~~l~~~~~~~~~~~~v~N~~~~~~~~~~~~~~~~~--~~~v~~~ip~~~ 209 (245)
T 3ea0_A 163 KLCKEFEKPISRIEIILNRADTNSRITSDEIEKVI--GRPISKRIPQDE 209 (245)
T ss_dssp HHHHTCSSCCSCEEEEEESTTSCTTSCHHHHHHHH--TSCEEEEECCCH
T ss_pred HHHHHhCCCccceEEEEecCCCCCCCCHHHHHHHh--CCCeEEECCCCh
Confidence 9998776 567999999983 23456777777 899999 88875
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=1.3e-07 Score=92.76 Aligned_cols=87 Identities=9% Similarity=-0.022 Sum_probs=58.3
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHhC-----CCcEEEEEEccCCCC--
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLR-----GYDVVAVVFEDHGLV-- 292 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~-----~~~v~gvi~N~~~~~-- 292 (719)
.+|++||++.+++ +.....+....+. +|+|+.....+ ..+...++.++.. +.++ |+|+|++...
T Consensus 75 ~yD~viiD~~~~~------~~~~~~~l~~ad~-viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~-~vv~N~~~~~~~ 145 (206)
T 4dzz_A 75 DYDFAIVDGAGSL------SVITSAAVMVSDL-VIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEA-RFLITRKIEMAT 145 (206)
T ss_dssp TSSEEEEECCSSS------SHHHHHHHHHCSE-EEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEE-EEEECSBCTTEE
T ss_pred CCCEEEEECCCCC------CHHHHHHHHHCCE-EEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcE-EEEEeccCCCch
Confidence 3999999997765 2233444444443 78888888777 8888888888754 3566 9999998422
Q ss_pred CHHHHHHhhcC-CCcEE-e-cCCCCC
Q 005009 293 NEVPLMSYLRN-RVPVL-V-LPPLPQ 315 (719)
Q Consensus 293 ~~~~l~~~~~~-~~pvl-g-lP~~~~ 315 (719)
....+++.++. +.|++ + ||..+.
T Consensus 146 ~~~~~~~~l~~~~~~vl~~~Ip~~~~ 171 (206)
T 4dzz_A 146 MLNVLKESIKDTGVKAFRTAITQRQV 171 (206)
T ss_dssp EEHHHHHHHHHHTCCBCSSCCBCCHH
T ss_pred HHHHHHHHHHHcCCceeeccccccHH
Confidence 22334444433 78888 6 776553
|
| >2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=7.8e-07 Score=91.66 Aligned_cols=89 Identities=8% Similarity=-0.075 Sum_probs=63.7
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCC---------
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHG--------- 290 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~--------- 290 (719)
.+|+|||++.+|+..+. ...++...--.+|+|+.....++.++..+++.++..++++.|+|+|++.
T Consensus 128 ~yD~ViID~pp~~~~~~-----~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~ 202 (262)
T 2ph1_A 128 ELDHLLIDLPPGTGDAP-----LTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYFVCPNCGHK 202 (262)
T ss_dssp SCSEEEEECCSSSSSHH-----HHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCEECTTTCCE
T ss_pred CCCEEEEECcCCCchHH-----HHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCccCCcccccc
Confidence 49999999988753221 1111111122488888888999999999999999889999999999862
Q ss_pred -----CCCHHHHHHhhcCCCcEEe-cCCCCC
Q 005009 291 -----LVNEVPLMSYLRNRVPVLV-LPPLPQ 315 (719)
Q Consensus 291 -----~~~~~~l~~~~~~~~pvlg-lP~~~~ 315 (719)
....+.+.+.+ ++|+++ ||+.+.
T Consensus 203 ~~~~~~~~~~~~~~~~--g~~~~~~Ip~~~~ 231 (262)
T 2ph1_A 203 SYIFGEGKGESLAKKY--NIGFFTSIPIEEE 231 (262)
T ss_dssp ECTTCCCCHHHHHHHT--TCSEEEECCBCHH
T ss_pred cccccccHHHHHHHHc--CCCeEEEeeCchH
Confidence 12345566666 899999 887653
|
| >3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=8.4e-07 Score=90.39 Aligned_cols=103 Identities=9% Similarity=0.056 Sum_probs=72.5
Q ss_pred CCCHHHHHHHHHHHHh-ccccccccccccCcCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHH
Q 005009 191 VVGDSKVIETLGKCLR-DGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTIS 269 (719)
Q Consensus 191 ~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~ 269 (719)
.+..+.+.+.+..+.. . +|+|||.+.+|+. .....+... ---||+|+.....++.++..
T Consensus 96 ~~~~~~~~~~l~~l~~~~-------------yD~viiD~p~~~~------~~~~~~l~~-ad~vi~v~~~~~~s~~~~~~ 155 (260)
T 3q9l_A 96 ALTREGVAKVLDDLKAMD-------------FEFIVCDSPAGIE------TGALMALYF-ADEAIITTNPEVSSVRDSDR 155 (260)
T ss_dssp SSCHHHHHHHHHHHHHTT-------------CSEEEEECCSSSS------HHHHHHHHT-CSEEEEEECSSHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhccC-------------CCEEEEcCCCCCC------HHHHHHHHh-CCEEEEEecCChhHHHHHHH
Confidence 3456667666666655 4 9999999977542 122233332 23488999999999999999
Q ss_pred HHHHHHhCCC--------cEEEEEEccCC------CC--CHHHHHHhhcCCCcEEe-cCCCCC
Q 005009 270 AYESLKLRGY--------DVVAVVFEDHG------LV--NEVPLMSYLRNRVPVLV-LPPLPQ 315 (719)
Q Consensus 270 ~~~~l~~~~~--------~v~gvi~N~~~------~~--~~~~l~~~~~~~~pvlg-lP~~~~ 315 (719)
.++.++..+. ...|+|+|++. .. ..+.+.+.+ ++|+++ ||+.+.
T Consensus 156 ~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Ip~~~~ 216 (260)
T 3q9l_A 156 ILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEIL--RIKLVGVIPEDQS 216 (260)
T ss_dssp HHHHHTTSSHHHHTTCSCCEEEEEEEEECHHHHHTTSSCCHHHHHHHH--CSEEEEEEECCHH
T ss_pred HHHHHHHhccccccccCCcceEEEEecCCccccccccccCHHHHHHHh--CCceEEecCCChh
Confidence 9999886542 47899999972 11 236677777 899999 998764
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=98.60 E-value=3.8e-07 Score=101.28 Aligned_cols=205 Identities=12% Similarity=0.029 Sum_probs=119.6
Q ss_pred CHHHHHHHHHhhhh---cccccCCCCCChHHHHHHHHHHhccCCCCCCeEEE---eCChHHHHHHHHHHHHHHhhccccc
Q 005009 418 QIELARDMGYTAAR---FGHVMFPENVYEPALECAELLLQGVGKGWASRAYF---SDNGSTAIEIALKMAFRKFSFDHEV 491 (719)
Q Consensus 418 hP~V~~Av~~q~~~---~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f---~~SGsEA~E~AlKlA~r~~~~~~G~ 491 (719)
+++|.+|+.+.... +.......+...-..+|.++++++.+. +.+++ ++||++|+..++...+ +.
T Consensus 46 ~~~Vl~a~~~~~~~~~~~~~~~gy~Y~~~g~~~Le~~lA~l~g~---e~alv~p~~~sGt~A~~~al~all-----~p-- 115 (427)
T 3hvy_A 46 QLKVLKAFQEERISESHFTNSSGYGYNDIGRDSLDRVYANIFNT---ESAFVRPHFVNGTHAIGAALFGNL-----RP-- 115 (427)
T ss_dssp HHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHTC---SEEEEETTCCSHHHHHHHHHHHTC-----CT--
T ss_pred HHHHHHHHHHHHHHHHhcccCcCCCCCchhHHHHHHHHHHHhCC---CceEEeCCCCcHHHHHHHHHHHhc-----CC--
Confidence 78899998875432 111111223345577899999999884 45555 8999999998887551 22
Q ss_pred cccccCCCccccCcceEEEEEe-CCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCc-chhh
Q 005009 492 LVDFLGKDTTEKCIELKVLALK-GSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP-EWLY 569 (719)
Q Consensus 492 ~~~~~~~~~~~~~~r~kII~~~-~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P-~~~~ 569 (719)
...||+.+ ..|+|.. .....++.. +.. ..... |.....+| +..
T Consensus 116 --------------GD~Vl~~~~~~y~~~~-~~~g~~~~~-~~~-----~l~~~-------------G~~~~~v~~~~~- 160 (427)
T 3hvy_A 116 --------------NDTMMSICGMPYDTLH-DIIGMDDSK-KVG-----SLREY-------------GVKYKMVDLKDG- 160 (427)
T ss_dssp --------------TCEEEECSSSCCGGGH-HHHTCCTTC-CSC-----CTGGG-------------TCEEEECCCBTT-
T ss_pred --------------CCEEEEeCCCCchhHH-HHhccccch-hhh-----HHHHc-------------CCEEEEecCCCC-
Confidence 23677777 5555532 111111000 000 00000 11111111 000
Q ss_pred hcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcc----ccccCCccccCCHHHHHH
Q 005009 570 SKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEP----VVHAAGGMHMVDPLFQRI 645 (719)
Q Consensus 570 ~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEP----Viqg~gG~~~pp~~fl~~ 645 (719)
..| .+.+++.+.+ ..++.+|++|+ . .+..|.+. -+++
T Consensus 161 --------------------~~d--------~e~l~~~i~~------~~~tklV~i~~s~gyp-~nptg~v~----dl~~ 201 (427)
T 3hvy_A 161 --------------------KVD--------INTVKEELKK------DDSIKLIHIQRSTGYG-WRKSLRIA----EIAE 201 (427)
T ss_dssp --------------------BCC--------HHHHHHHHHH------CTTEEEEEEESSCCSS-SSCCCCHH----HHHH
T ss_pred --------------------CcC--------HHHHHHHhhC------CCCCEEEEEECCCCCC-CCccccHH----HHHH
Confidence 001 2567777752 13678999999 5 55555544 4999
Q ss_pred HHHHHHh--cCCcEEEeccccCccc-cCccccccccCCCccee--eehhccCCCccch-heeEeCHHHHhhhc
Q 005009 646 LVKECQN--RKIPVIFDEVFTGFWR-LGVETTADLLGCVPDIA--CYGKLLTGGVIPL-AATLATNAVFDSFV 712 (719)
Q Consensus 646 Lr~Lc~k--~gilLI~DEVqTGfGR-tG~~~a~e~~gv~PDIv--tlgK~LggG~~Pl-savl~~~~i~~~~~ 712 (719)
|.++|++ ||+++|+||++..+ . .... .....|++ +++|.+||+..|. |.+++++++.+.+.
T Consensus 202 i~~ia~~~~~g~~livD~a~~~~-~~~~~p-----~~~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~li~~l~ 268 (427)
T 3hvy_A 202 IIKSIREVNENVIVFVDNCYGEF-VEEKEP-----TDVGADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQAT 268 (427)
T ss_dssp HHHHHHHHCSSSEEEEECTTCTT-TSSSCG-----GGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEEECCcccc-ccCCCC-----cccCCeEEEECCcccccccccceEEEEEECHHHHHHHH
Confidence 9999999 99999999998532 2 1111 11235877 6899998753454 66788888887764
|
| >3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.4e-06 Score=91.63 Aligned_cols=78 Identities=12% Similarity=0.107 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHH
Q 005009 194 DSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYES 273 (719)
Q Consensus 194 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~ 273 (719)
.+.+.+.+..+.+. +|+|||.+..++.+ .....+++..+. +|+|+......+..+..+++.
T Consensus 188 ~~~l~~ll~~l~~~-------------yD~VIIDtpp~~~~-----~da~~l~~~aD~-vllVv~~~~~~~~~~~~~~~~ 248 (286)
T 3la6_A 188 SERFAELVNWASKN-------------YDLVLIDTPPILAV-----TDAAIVGRHVGT-TLMVARYAVNTLKEVETSLSR 248 (286)
T ss_dssp SHHHHHHHHHHHHH-------------CSEEEEECCCTTTC-----THHHHHTTTCSE-EEEEEETTTSBHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-------------CCEEEEcCCCCcch-----HHHHHHHHHCCe-EEEEEeCCCCcHHHHHHHHHH
Confidence 35566666665544 99999999654322 223445555554 889999999999999999999
Q ss_pred HHhCCCcEEEEEEccCC
Q 005009 274 LKLRGYDVVAVVFEDHG 290 (719)
Q Consensus 274 l~~~~~~v~gvi~N~~~ 290 (719)
++..|.++.|+|+|++.
T Consensus 249 l~~~g~~~~GvVlN~v~ 265 (286)
T 3la6_A 249 FEQNGIPVKGVILNSIF 265 (286)
T ss_dssp HHHTTCCCCEEEEEEEC
T ss_pred HHhCCCCEEEEEEcCcc
Confidence 99999999999999983
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=98.57 E-value=8.9e-08 Score=101.22 Aligned_cols=191 Identities=8% Similarity=-0.058 Sum_probs=116.0
Q ss_pred CHHHHHHHHHhhhhcccccCCCC--CChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccc
Q 005009 418 QIELARDMGYTAARFGHVMFPEN--VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDF 495 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~--~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~ 495 (719)
+|++.+++.+.+........... ..+...++.++|++..+...-+.++|++||++|++.+++...
T Consensus 16 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~------------- 82 (362)
T 3ffr_A 16 YPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCV------------- 82 (362)
T ss_dssp CTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHC-------------
T ss_pred CHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhcc-------------
Confidence 78999888877765321110001 124456778888887754223579999999999999998761
Q ss_pred cCCCccccCcceEEEEEeCCcccCccccc-cccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccc
Q 005009 496 LGKDTTEKCIELKVLALKGSYHGDTLGAM-EAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVE 574 (719)
Q Consensus 496 ~~~~~~~~~~r~kII~~~~syHG~t~gal-slt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~ 574 (719)
++ +++.....+++.....+ ...|.. ...++.+..+
T Consensus 83 ---------~~-~~i~~~~~~~~~~~~~~~~~~g~~----------------------------~~~v~~~~~~------ 118 (362)
T 3ffr_A 83 ---------EK-KSFHCVNGSFSKRFYEFAGELGRE----------------------------AYKEEAAFGK------ 118 (362)
T ss_dssp ---------SS-EEEEEECSHHHHHHHHHHHHTTCE----------------------------EEEEECCTTC------
T ss_pred ---------CC-cEEEEcCcHHHHHHHHHHHHhCCC----------------------------eEEEecCCCC------
Confidence 12 66777777776322111 111100 0111111111
Q ss_pred cccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhc-
Q 005009 575 HKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR- 653 (719)
Q Consensus 575 ~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~- 653 (719)
..|. +.++ + ..++.+|++... +...|.+.+ +++|.++|++|
T Consensus 119 -----~~d~------------------~~l~--~--------~~~~~~v~~~~~-~nptG~~~~----l~~i~~la~~~p 160 (362)
T 3ffr_A 119 -----GFYP------------------ADIT--V--------PADAEIICLTHN-ETSSGVSMP----VEDINTFRDKNK 160 (362)
T ss_dssp -----CCCG------------------GGCC--C--------CTTCCEEEEESE-ETTTTEECC----HHHHTTSGGGST
T ss_pred -----CCCH------------------HHHh--c--------cCCccEEEEEcC-CCCcceeCC----HHHHHHHHHhCC
Confidence 0011 1222 1 235678888886 888898887 99999999999
Q ss_pred CCcEEEeccccCccccCccccccccCC-Ccceee--ehhccCCCccchheeEeCHHHHhhhc
Q 005009 654 KIPVIFDEVFTGFWRLGVETTADLLGC-VPDIAC--YGKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 654 gilLI~DEVqTGfGRtG~~~a~e~~gv-~PDIvt--lgK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
|+++|+||+++.+... .++ ..|+++ ++|.++++ .-++.+++++++.+.+.
T Consensus 161 ~~~li~D~a~~~~~~~--------~~~~~~d~~~~s~~K~~~~~-~G~g~~~~~~~~~~~~~ 213 (362)
T 3ffr_A 161 DALIFVDAVSSLPYPK--------FDWTKIDSVFFSVQKCFGLP-AGLGVWILNDRVIEKSK 213 (362)
T ss_dssp TSEEEEECTTTTTSSC--------CCTTSCSEEEEETTSTTCCC-SCCEEEEEEHHHHHHHH
T ss_pred CCEEEEecccccCCcc--------cChhHCcEEEEecccccCCC-CceEEEEECHHHHHHhh
Confidence 9999999999632111 111 178885 45999843 23577889998876543
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=1.9e-06 Score=93.15 Aligned_cols=97 Identities=14% Similarity=0.119 Sum_probs=67.4
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc---ccccccc
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV---ETTADLL 678 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~---~~a~e~~ 678 (719)
+.+++.+++ ...+..++++... +...|.+ .+.+.+++|.++|++||+++|.||++.+|+..+. .+....+
T Consensus 163 ~~l~~~l~~-----~~~~~~~v~i~~p-~NPtG~~-~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~ 235 (401)
T 7aat_A 163 TGAMEDISK-----IPEKSIILLHACA-HNPTGVD-PRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHF 235 (401)
T ss_dssp HHHHHHHTT-----SCTTCEEEEESSS-CTTTCCC-CCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHH
T ss_pred HHHHHHHHh-----CCCCcEEEEeCCC-CCCCCCC-CCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHH
Confidence 345555653 1235567777765 7777775 4788999999999999999999999998876553 3333222
Q ss_pred -CCCcce---eeehhccC-CCccchheeEe---CHH
Q 005009 679 -GCVPDI---ACYGKLLT-GGVIPLAATLA---TNA 706 (719)
Q Consensus 679 -gv~PDI---vtlgK~Lg-gG~~Plsavl~---~~~ 706 (719)
+..+++ .+++|.+| .| +.+|++++ +++
T Consensus 236 ~~~~~~~i~~~S~sK~~~~~G-~RiG~l~~~~~~~~ 270 (401)
T 7aat_A 236 IEQGIDVVLSQSYAKNMGLYG-ERAGAFTVICRDAE 270 (401)
T ss_dssp HHTTCCCEEEEECTTTSCCGG-GCEEEEEEECSSHH
T ss_pred HhcCCcEEEEecCCccccccc-CceEEEEEEeCCHH
Confidence 334444 47999998 57 57888765 555
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=2e-06 Score=95.53 Aligned_cols=96 Identities=17% Similarity=0.137 Sum_probs=67.0
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEcc----ccccCCccccCCHHHHHHHHHHHHh--cCCcEEEeccccCccccCccccc
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEP----VVHAAGGMHMVDPLFQRILVKECQN--RKIPVIFDEVFTGFWRLGVETTA 675 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEP----Viqg~gG~~~pp~~fl~~Lr~Lc~k--~gilLI~DEVqTGfGRtG~~~a~ 675 (719)
+.+++.+.+ ..+..+|++|+ . .+..|.+.+ +++|.++|++ ||+++|+||++.-+.-.....
T Consensus 165 e~l~~~l~~------~~~tklV~i~~s~~~p-~nptg~i~d----l~~i~~la~~~~~g~~livD~a~~~~~~~~~p~-- 231 (427)
T 3i16_A 165 EEIEKVLKE------DESITLVHIQRSTGYG-WRRALLIED----IKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPT-- 231 (427)
T ss_dssp HHHHHHHHT------CTTEEEEEEECSCCSS-SSCCCCHHH----HHHHHHHHHHHCTTSEEEEECTTTTTSSSSCGG--
T ss_pred HHHHHHhhC------CCCCEEEEEEcCCCCC-CCCcccHHH----HHHHHHHHHHhCCCCEEEEECCCccccccCCcc--
Confidence 567777752 14678999998 5 566665544 9999999999 999999999985321011111
Q ss_pred cccCCCccee--eehhccCCCccc-hheeEeCHHHHhhhcC
Q 005009 676 DLLGCVPDIA--CYGKLLTGGVIP-LAATLATNAVFDSFVG 713 (719)
Q Consensus 676 e~~gv~PDIv--tlgK~LggG~~P-lsavl~~~~i~~~~~~ 713 (719)
....||+ +++|.+||+.-| .|.+++++++.+.+..
T Consensus 232 ---~~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~~ 269 (427)
T 3i16_A 232 ---DVGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSY 269 (427)
T ss_dssp ---GGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHH
T ss_pred ---ccCCeEEEecCcccCCCCCCceEEEEEECHHHHHHHHH
Confidence 1235877 689999875334 4678889998887643
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=4.6e-07 Score=100.05 Aligned_cols=171 Identities=11% Similarity=0.038 Sum_probs=110.4
Q ss_pred CCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCccc
Q 005009 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (719)
Q Consensus 439 ~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG 518 (719)
.+.++...+|.++|+++.+. +.+++++||++|+..|++... +.| ..||+....|||
T Consensus 78 r~~~p~~~~le~~lA~l~g~---~~~i~~ssGt~Ai~~al~~l~-----~~G----------------d~Vi~~~~~y~~ 133 (415)
T 2fq6_A 78 RRGTLTHFSLQQAMCELEGG---AGCVLFPCGAAAVANSILAFI-----EQG----------------DHVLMTNTAYEP 133 (415)
T ss_dssp TTCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHTTC-----CTT----------------CEEEEETTSCHH
T ss_pred CCCCchHHHHHHHHHHHhCC---CeEEEeCCHHHHHHHHHHHHh-----CCC----------------CEEEEeCCCchH
Confidence 34577888999999998874 467778999999999988541 122 378888888877
Q ss_pred CccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHH
Q 005009 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (719)
Q Consensus 519 ~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~ 598 (719)
. ...+.-. .. . .+ .....+| .+|.
T Consensus 134 ~-~~~~~~~-l~---~---------~G-------------~~v~~v~--------------~~d~--------------- 157 (415)
T 2fq6_A 134 S-QDFCSKI-LS---K---------LG-------------VTTSWFD--------------PLIG--------------- 157 (415)
T ss_dssp H-HHHHHHT-GG---G---------GT-------------CEEEEEC--------------TTCG---------------
T ss_pred H-HHHHHHH-HH---H---------cC-------------cEEEEEC--------------CCCH---------------
Confidence 3 2221100 00 0 00 0000001 1121
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHh--cCCcEEEeccccCccccCcccccc
Q 005009 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQN--RKIPVIFDEVFTGFWRLGVETTAD 676 (719)
Q Consensus 599 ~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k--~gilLI~DEVqTGfGRtG~~~a~e 676 (719)
+.+++.|. .++.+|++|.. +...|.+.+ +++|.++|++ ||+++|+||+|.- +-.+..+
T Consensus 158 ---~~le~ai~--------~~tklV~~e~~-~NptG~v~d----l~~I~~la~~~~~g~~livD~a~a~-~~~~~p~--- 217 (415)
T 2fq6_A 158 ---ADIVKHLQ--------PNTKIVFLESP-GSITMEVHD----VPAIVAAVRSVVPDAIIMIDNTWAA-GVLFKAL--- 217 (415)
T ss_dssp ---GGGGGGCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHHHHCTTCEEEEECTTTT-TTSSCGG---
T ss_pred ---HHHHHhhc--------cCCcEEEEECC-CCCCCEeec----HHHHHHHHHhhcCCCEEEEECCCcc-cccCCcc---
Confidence 23444442 25789999987 888898887 8999999999 9999999999952 1112212
Q ss_pred ccCCCccee--eehhccCC-CccchheeEeCHHHHhhh
Q 005009 677 LLGCVPDIA--CYGKLLTG-GVIPLAATLATNAVFDSF 711 (719)
Q Consensus 677 ~~gv~PDIv--tlgK~Lgg-G~~Plsavl~~~~i~~~~ 711 (719)
....|++ ++.|.+|+ |-...|++++++++++.+
T Consensus 218 --~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l 253 (415)
T 2fq6_A 218 --DFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQL 253 (415)
T ss_dssp --GGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHH
T ss_pred --ccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHH
Confidence 2346888 68999986 323457888888776654
|
| >3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=2.2e-06 Score=89.37 Aligned_cols=64 Identities=11% Similarity=0.011 Sum_probs=52.0
Q ss_pred CcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCC
Q 005009 221 EILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHG 290 (719)
Q Consensus 221 ~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~ 290 (719)
+|+|||.+..++.+ .....+++..+ -+|+|+.....++.++..+++.++..+.++.|+|+|++.
T Consensus 192 yD~VIIDtpp~~~~-----~d~~~l~~~aD-~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~ 255 (271)
T 3bfv_A 192 YNFVIIDTPPVNTV-----TDAQLFSKFTG-NVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMP 255 (271)
T ss_dssp CSEEEEECCCTTTC-----SHHHHHHHHHC-EEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEEC
T ss_pred CCEEEEeCCCCchH-----HHHHHHHHHCC-EEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCc
Confidence 99999999765432 22344555555 489999999999999999999999999999999999983
|
| >3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.49 E-value=8.2e-07 Score=93.87 Aligned_cols=76 Identities=14% Similarity=0.086 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHH
Q 005009 195 SKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESL 274 (719)
Q Consensus 195 ~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l 274 (719)
+.+.+.+..+.+. +|+|||++..++.+ ..+.++...--.+|+|+.....++.++..+++.+
T Consensus 201 ~~l~~ll~~l~~~-------------yD~VIIDtpp~~~~------~d~~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l 261 (299)
T 3cio_A 201 DRMRQLLEWANDH-------------YDLVIVDTPPMLAV------SDAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRL 261 (299)
T ss_dssp HHHHHHHHHHHHH-------------CSEEEEECCCTTTC------THHHHHGGGCSEEEEEEETTTSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-------------CCEEEEcCCCCchh------HHHHHHHHHCCEEEEEEcCCCChHHHHHHHHHHH
Confidence 4555555555544 99999999775432 2233333333468889998888999999999999
Q ss_pred HhCCCcEEEEEEccC
Q 005009 275 KLRGYDVVAVVFEDH 289 (719)
Q Consensus 275 ~~~~~~v~gvi~N~~ 289 (719)
+..+.++.|+|+|++
T Consensus 262 ~~~~~~~~GvVlN~~ 276 (299)
T 3cio_A 262 EQAGVNIKGAILNGV 276 (299)
T ss_dssp HHTTCCCCCEEEEEC
T ss_pred HhCCCCeEEEEEeCC
Confidence 999999999999998
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.5e-07 Score=104.72 Aligned_cols=82 Identities=13% Similarity=0.040 Sum_probs=57.9
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc-cccccccCCCcceeeeh--hccCCCc
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV-ETTADLLGCVPDIACYG--KLLTGGV 695 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~-~~a~e~~gv~PDIvtlg--K~LggG~ 695 (719)
++.+|++.+- ...|.+.+ +++|.++|++||++||+||++++..+.+. .+....+ .+|+++.+ |.++|+
T Consensus 146 ~~~~v~~~~~--n~~G~~~~----l~~I~~l~~~~~~~livDea~~~~~~f~~~~~~~~~~--g~Di~~~S~~K~l~~~- 216 (446)
T 2x3l_A 146 GHKLVVLTYP--NYYGETFN----VEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDSTLNY--QADYVVQSFHKTLPAL- 216 (446)
T ss_dssp -CCEEEEESS--CTTSCCCC----HHHHHHHHHHTTCCEEEECTTCTTTTSTTSCCCGGGG--TCSEEEECHHHHSSSC-
T ss_pred CceEEEEECC--CCCeEecC----HHHHHHHHHhcCCeEEEcchhhhhhccCCCCCChHHc--CCCEEEECCccccccc-
Confidence 3456666662 33677776 89999999999999999999986222222 2222233 37998766 998877
Q ss_pred cchheeEeCHHHHh
Q 005009 696 IPLAATLATNAVFD 709 (719)
Q Consensus 696 ~Plsavl~~~~i~~ 709 (719)
.++|++++++++++
T Consensus 217 ~g~g~l~~~~~~i~ 230 (446)
T 2x3l_A 217 TMGSVLYIHKNAPY 230 (446)
T ss_dssp TTCEEEEEETTCTT
T ss_pred cccEEEEEcCCcCC
Confidence 57899999887644
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.39 E-value=8.1e-06 Score=90.74 Aligned_cols=37 Identities=19% Similarity=0.111 Sum_probs=32.4
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
....++|+|. +|+||||++..|+.+|. ++|++|..+.
T Consensus 99 ~p~vIlivG~-~G~GKTTt~~kLA~~l~-----~~G~kVllv~ 135 (443)
T 3dm5_A 99 KPTILLMVGI-QGSGKTTTVAKLARYFQ-----KRGYKVGVVC 135 (443)
T ss_dssp SSEEEEEECC-TTSSHHHHHHHHHHHHH-----TTTCCEEEEE
T ss_pred CCeEEEEECc-CCCCHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 3457899999 99999999999999995 7799998876
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.6e-06 Score=97.74 Aligned_cols=214 Identities=14% Similarity=0.074 Sum_probs=121.9
Q ss_pred CHHHHHHHHHhhhhccc--c-c--CCCCCChHHHHHHHHHHhccCCC-CCCeEEEeCChHHHHHHHHHHHHHHhhccccc
Q 005009 418 QIELARDMGYTAARFGH--V-M--FPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAFRKFSFDHEV 491 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~--~-~--~~~~~~~~~~~Lae~L~~~~~~~-~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~ 491 (719)
.+++++++.+++..... . . ......+...++++.+.+..+.. ..+.++++++|++|+..+++... ...
T Consensus 108 p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~----~~~-- 181 (500)
T 3tcm_A 108 SADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLI----RNE-- 181 (500)
T ss_dssp CHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHC----CST--
T ss_pred CHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHc----CCC--
Confidence 77888888888876421 1 1 11122344556666665433211 13689999999999999998761 011
Q ss_pred cccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhc
Q 005009 492 LVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSK 571 (719)
Q Consensus 492 ~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~ 571 (719)
...|+...-+|++.... +...|... ..++..+.
T Consensus 182 --------------gd~Vlv~~p~y~~~~~~-~~~~g~~~----------------------------~~~~~~~~---- 214 (500)
T 3tcm_A 182 --------------KDGILVPIPQYPLYSAS-IALHGGAL----------------------------VPYYLNES---- 214 (500)
T ss_dssp --------------TEEEEEEESCCTHHHHH-HHHTTCEE----------------------------EEEECBTT----
T ss_pred --------------CCEEEEeCCCcHhHHHH-HHHcCCEE----------------------------EEEecccc----
Confidence 24688888888764432 22222110 01111100
Q ss_pred ccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHH
Q 005009 572 IVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQ 651 (719)
Q Consensus 572 ~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~ 651 (719)
++ + .-| .+.|++.+.+.. ..+.++.+|++.-. +.-.|.+. +.+-+++|.++|+
T Consensus 215 ---------~~----~--~~d--------~~~l~~~l~~~~--~~~~~~k~ivl~~p-~NPtG~~~-s~~~l~~i~~la~ 267 (500)
T 3tcm_A 215 ---------TG----W--GLE--------TSDVKKQLEDAR--SRGINVRALVVINP-GNPTGQVL-AEENQYDIVKFCK 267 (500)
T ss_dssp ---------TT----S--BCC--------HHHHHHHHHHHH--HTTCEEEEEEEESS-CTTTCCCC-CHHHHHHHHHHHH
T ss_pred ---------cC----C--CCC--------HHHHHHHHHHHH--hcCCCceEEEEECC-CCCCcccC-CHHHHHHHHHHHH
Confidence 00 0 001 244555554310 11235655555543 56566654 6778999999999
Q ss_pred hcCCcEEEeccccCccccC--ccccc----cccCC-Ccc---ee--eehhcc-C-CCccchheeEe---CHHHHhhhc
Q 005009 652 NRKIPVIFDEVFTGFWRLG--VETTA----DLLGC-VPD---IA--CYGKLL-T-GGVIPLAATLA---TNAVFDSFV 712 (719)
Q Consensus 652 k~gilLI~DEVqTGfGRtG--~~~a~----e~~gv-~PD---Iv--tlgK~L-g-gG~~Plsavl~---~~~i~~~~~ 712 (719)
+||+++|+||++.++...+ .+..+ ..++. ..| |+ +++|++ | .| +.+|++++ ++++++.+.
T Consensus 268 ~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~ 344 (500)
T 3tcm_A 268 NEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECG-KRGGYFEITGFSAPVREQIY 344 (500)
T ss_dssp HHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGG-GCCEEEEEESCCTTHHHHHH
T ss_pred HcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCc-cceEEEEEeCCCHHHHHHHH
Confidence 9999999999998753322 22221 12332 222 33 789999 4 37 68888888 888877653
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=7.5e-07 Score=101.83 Aligned_cols=223 Identities=10% Similarity=0.001 Sum_probs=129.6
Q ss_pred eeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhc-cCCC----CCCeEEEeCChHHHHH
Q 005009 401 QFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG-VGKG----WASRAYFSDNGSTAIE 475 (719)
Q Consensus 401 yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~-~~~~----~~~rv~f~~SGsEA~E 475 (719)
++|+..| ..+|. +|.+++++.+++....+.. .....+...++++.+.+. .+.+ ..+.++++++++||+.
T Consensus 106 ~i~l~~g----~~~~~-~~~~~~al~~~~~~~~Y~~-~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~ 179 (546)
T 2zy4_A 106 SLSYVRD----QLGLD-PAAFLHEMVDGILGCNYPV-PPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMA 179 (546)
T ss_dssp HHHHHHH----TSCCC-HHHHHHHHHHHHHTCSCCS-SSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHH
T ss_pred hhecccC----CCCCC-ChHHHHHHHHhhhcCCCCC-CcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHH
Confidence 5565443 45788 8999999988875422221 122345555666665432 1110 1368999999999999
Q ss_pred HHHHHHH-HHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCccc
Q 005009 476 IALKMAF-RKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (719)
Q Consensus 476 ~AlKlA~-r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~ 554 (719)
.+++... +.+. .. ..+|+...-+|++....+. +.+. +
T Consensus 180 ~~~~~l~~~~l~-~~----------------Gd~Vlv~~P~y~~~~~~~~-~~~~----g-------------------- 217 (546)
T 2zy4_A 180 YIFESLKLNGLL-KA----------------GDKVAIGMPVFTPYIEIPE-LAQY----A-------------------- 217 (546)
T ss_dssp HHHHHHHHTTSS-CT----------------TCEEEEEESCCHHHHHHHH-STTS----C--------------------
T ss_pred HHHHHhhhhhcC-CC----------------CCEEEEeCCCCccHHHHHH-HcCC----C--------------------
Confidence 9998741 1121 11 2478899999998654321 1110 0
Q ss_pred ccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCc
Q 005009 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (719)
Q Consensus 555 ~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG 634 (719)
...+++|. +.+.-| .-| .+.+++.+. .++.+|++..- +.-.|
T Consensus 218 ----~~~~~v~~---------------~~~~~~--~~d--------~~~l~~~~~--------~~~k~v~l~~p-~NPtG 259 (546)
T 2zy4_A 218 ----LEEVAINA---------------DPSLNW--QYP--------DSELDKLKD--------PAIKIFFCVNP-SNPPS 259 (546)
T ss_dssp ----CEEEEEEC---------------BGGGTT--BCC--------HHHHGGGGS--------TTEEEEEEESS-CSSSC
T ss_pred ----cEEEEEec---------------CcccCC--CCC--------HHHHHHhhC--------CCCeEEEEECC-CCCCC
Confidence 00111110 000000 001 233443332 35666666543 67777
Q ss_pred cccCCHHHHHHHHHHH--HhcCCcEEEeccccCccccCccccccccCCCcceeeehhccC-CCccchheeEeCHH-HHhh
Q 005009 635 MHMVDPLFQRILVKEC--QNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLT-GGVIPLAATLATNA-VFDS 710 (719)
Q Consensus 635 ~~~pp~~fl~~Lr~Lc--~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lg-gG~~Plsavl~~~~-i~~~ 710 (719)
.+. +.+.+++|.++| ++||+++|.||++..|...+..+.....+....+.+++|.+| .| +.+|.++++++ +++.
T Consensus 260 ~~~-~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~G-lRiG~~~~~~~~l~~~ 337 (546)
T 2zy4_A 260 VKM-DQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYFGATG-WRLGVVAAHQQNVFDL 337 (546)
T ss_dssp BCC-CHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTTCGG-GCEEEEEEESSCHHHH
T ss_pred ccC-CHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccccCCCC-cceEEEEECCHHHHHH
Confidence 655 678899999999 889999999999998864322221111111122448999997 68 68999999875 6665
Q ss_pred h
Q 005009 711 F 711 (719)
Q Consensus 711 ~ 711 (719)
+
T Consensus 338 l 338 (546)
T 2zy4_A 338 A 338 (546)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=1.2e-06 Score=99.58 Aligned_cols=38 Identities=18% Similarity=0.201 Sum_probs=36.0
Q ss_pred CCeEEEE-cCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcc
Q 005009 37 HPTFQIW-SANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (719)
Q Consensus 37 ~~~~~I~-gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KP 79 (719)
++.|||+ ||.+++||++++++|||.|. ++|++|.+||+
T Consensus 3 ~~~i~v~gg~~s~~gk~~~~~~l~~~l~-----~~g~~v~~~k~ 41 (545)
T 1s1m_A 3 TNYIFVTGGVVSSLGKGIAAASLAAILE-----ARGLNVTIMKL 41 (545)
T ss_dssp CEEEEEEECSSSCSCHHHHHHHHHHHHH-----TTTCCEEEEEE
T ss_pred ceEEEEeCCcccCcchHHHHHHHHHHHH-----hCCceeeeeec
Confidence 4689999 99999999999999999995 99999999997
|
| >3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A | Back alignment and structure |
|---|
Probab=98.32 E-value=1e-05 Score=83.15 Aligned_cols=91 Identities=5% Similarity=-0.112 Sum_probs=57.5
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHhCCCc-EEEEEEccC-CCCCHHHH
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYD-VVAVVFEDH-GLVNEVPL 297 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~-v~gvi~N~~-~~~~~~~l 297 (719)
.+|+|||.+..++ +..........+ -||+|+.....++..+...++.++..+.+ -+++|+|++ .......+
T Consensus 144 ~yD~viiD~pp~~------~~~~~~~l~~aD-~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~~~~~~~~ 216 (267)
T 3k9g_A 144 KYDYIVIDTNPSL------DVTLKNALLCSD-YVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKKNRTHKTL 216 (267)
T ss_dssp TCSEEEEEECSSC------SHHHHHHHTTCS-EEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECTTCSCCHH
T ss_pred CCCEEEEECcCCc------cHHHHHHHHHCC-eEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccCcchHHHH
Confidence 4999999996643 112222323222 37777788888888888888888866433 236999998 22334455
Q ss_pred HHhhcCCCcEEe-cCCCCCCC
Q 005009 298 MSYLRNRVPVLV-LPPLPQDS 317 (719)
Q Consensus 298 ~~~~~~~~pvlg-lP~~~~~~ 317 (719)
.+.++++.|+++ ||+.+.+.
T Consensus 217 ~~~l~~~~~~~~~Ip~~~~~~ 237 (267)
T 3k9g_A 217 FEILKTKDRFLGTISEREDLN 237 (267)
T ss_dssp HHHHTTSTTEEEEEEC-----
T ss_pred HHHHhcCcccceecCcHHHHH
Confidence 666655789999 99988755
|
| >3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=1.4e-06 Score=94.04 Aligned_cols=64 Identities=17% Similarity=0.020 Sum_probs=49.8
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCC---C----------H---HHHHHhhcCCCcEEe-cCCC
Q 005009 251 LPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLV---N----------E---VPLMSYLRNRVPVLV-LPPL 313 (719)
Q Consensus 251 ~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~~---~----------~---~~l~~~~~~~~pvlg-lP~~ 313 (719)
..+|+|+.....++..+..+++.+++.|+++.|||+|++... . . +.+.+.+ +.+.++ ||..
T Consensus 238 ~~~vlV~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~--~~~~l~~iPl~ 315 (349)
T 3ug7_A 238 TAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKF--GDKVIAYVPLL 315 (349)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHS--TTSEEEEEECC
T ss_pred ceEEEEECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCccccCCCchHHHHHHHHHHHHHHHHHHc--CCCcEEEecCC
Confidence 348999999999999999999999999999999999998322 1 1 1222222 788888 9998
Q ss_pred CCC
Q 005009 314 PQD 316 (719)
Q Consensus 314 ~~~ 316 (719)
+..
T Consensus 316 ~~e 318 (349)
T 3ug7_A 316 RTE 318 (349)
T ss_dssp SSC
T ss_pred CCC
Confidence 863
|
| >3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid} | Back alignment and structure |
|---|
Probab=98.26 E-value=7.7e-06 Score=87.26 Aligned_cols=40 Identities=13% Similarity=-0.086 Sum_probs=37.1
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCC
Q 005009 251 LPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHG 290 (719)
Q Consensus 251 ~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~ 290 (719)
.-+|+|+....-++..+..+++.++..|+++.|||+|++.
T Consensus 223 ~~~vlV~~p~~~~~~~~~~~~~~l~~~gi~v~gvV~N~~~ 262 (324)
T 3zq6_A 223 TSFKMVVIPEEMSIYESERAMKALEKYSIHADGVIVNQVL 262 (324)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred CeEEEEeCCcccHHHHHHHHHHHHHHCCCCccEEEEcCCc
Confidence 3589999999999999999999999999999999999983
|
| >1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A | Back alignment and structure |
|---|
Probab=98.23 E-value=3e-06 Score=96.30 Aligned_cols=39 Identities=18% Similarity=0.214 Sum_probs=36.7
Q ss_pred CCCeEEEE-cCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcc
Q 005009 36 SHPTFQIW-SANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (719)
Q Consensus 36 ~~~~~~I~-gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KP 79 (719)
|++.|||+ ||.+++||++++++||+.|. ++|++|.+||+
T Consensus 11 ~~~~i~v~gg~~s~~gk~~~~~~~~~~l~-----~~g~~v~~~k~ 50 (550)
T 1vco_A 11 PRKYVFITGGVVSSLGKGILTSSLGALLR-----ARGYRVTAIKI 50 (550)
T ss_dssp CCEEEEEEECSSSCSCHHHHHHHHHHHHH-----TTTCCEEEEEE
T ss_pred ceeEEEEeCCcccCcchHHHHHHHHHHHH-----hCCceeeEeec
Confidence 46789999 99999999999999999995 99999999997
|
| >2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.21 E-value=2.4e-05 Score=83.69 Aligned_cols=62 Identities=15% Similarity=0.073 Sum_probs=48.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCC-CCC-------------HHH---HHHhhcCCCcEEecCCCCC
Q 005009 253 GILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHG-LVN-------------EVP---LMSYLRNRVPVLVLPPLPQ 315 (719)
Q Consensus 253 vilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~-~~~-------------~~~---l~~~~~~~~pvlglP~~~~ 315 (719)
+++|+.....++.++..+++.++..|+++.|+|+|++. ... ... +.+.+. ++|+..||+.+.
T Consensus 224 ~vlV~~pe~~~i~ea~~~~~~L~~~gi~v~gvVvN~~~~p~~~~~~~~~~~~~~q~~~l~~i~~~~~-~~~~~~vP~~~~ 302 (329)
T 2woo_A 224 FVCVCISEFLSLYETERMIQELTSYEIDTHNIVVNQLLLDPNTTCPQCMARRKMQQKYLAQIEELYE-DFHVVKVPQVPA 302 (329)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECCCSSCCCHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEECCSS
T ss_pred EEEEeCCCcchHHHHHHHHHHHHHCCCCCCEEEEeCCcCcccccCHHHHHHHHHHHHHHHHHHHhcC-CCCEEEecCCCC
Confidence 89999999999999999999999999999999999984 221 111 222221 678866998764
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=2.2e-05 Score=88.84 Aligned_cols=97 Identities=10% Similarity=0.040 Sum_probs=63.9
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC-
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC- 680 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv- 680 (719)
+.|++.|.+.. ..+....+|++.-. ....|.+.+ +++|.++|++||+++++|+++.|.--...-+.....|+
T Consensus 233 ~~Le~~i~~~~--~~g~~~~~vv~~~~-~~~~G~vd~----l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~~~~~g~~ 305 (511)
T 3vp6_A 233 ADFEAKILEAK--QKGYVPFYVNATAG-TTVYGAFDP----IQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIE 305 (511)
T ss_dssp HHHHHHHHHHH--HTTCEEEEEEEEBS-CSSSCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGG
T ss_pred HHHHHHHHHHH--hcCCCcEEEEEecC-CCCCccccc----HHHHHHHHHHcCCEEEEEccchhhHhhChhhhhhccCCc
Confidence 45666665310 12234677887765 777888877 99999999999999999999976422222222222244
Q ss_pred Ccceee--ehhccCCCccchheeEeCHH
Q 005009 681 VPDIAC--YGKLLTGGVIPLAATLATNA 706 (719)
Q Consensus 681 ~PDIvt--lgK~LggG~~Plsavl~~~~ 706 (719)
..|+++ ..|.+++. +-.|+++++++
T Consensus 306 ~aDsv~~~~hK~l~~p-~g~g~l~~~~~ 332 (511)
T 3vp6_A 306 RANSVTWNPHKMMGVL-LQCSAILVKEK 332 (511)
T ss_dssp GCSEEEECTTSTTCCC-SCCEEEEESST
T ss_pred cCCEEEECcccccCCC-cCeEEEEEeCH
Confidence 468775 57888765 45677777654
|
| >1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=2.5e-05 Score=79.98 Aligned_cols=86 Identities=9% Similarity=0.065 Sum_probs=55.3
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHh------CCCcEEEEEEccCCCC-
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKL------RGYDVVAVVFEDHGLV- 292 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~------~~~~v~gvi~N~~~~~- 292 (719)
.+|+|||.+.+++.. .........+ .||+|+.....++..+...++.++. .++++.|+|+|++...
T Consensus 111 ~yD~iiiD~pp~~~~------~~~~~l~~aD-~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~ 183 (257)
T 1wcv_1 111 GYDLVLLDAPPSLSP------LTLNALAAAE-GVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGRT 183 (257)
T ss_dssp TCSEEEEECCSSCCH------HHHHHHHHCS-EEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTTC
T ss_pred CCCEEEEeCCCCCCH------HHHHHHHHCC-eEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCCc
Confidence 499999999776421 2233333333 4788888887777776666655542 3678899999998432
Q ss_pred C-----HHHHHHhhcCCCcEE-e-cCCCC
Q 005009 293 N-----EVPLMSYLRNRVPVL-V-LPPLP 314 (719)
Q Consensus 293 ~-----~~~l~~~~~~~~pvl-g-lP~~~ 314 (719)
. .+.+++.+ +.|++ + ||+.+
T Consensus 184 ~~~~~~~~~l~~~~--~~~~~~~~Ip~~~ 210 (257)
T 1wcv_1 184 LLAQQVEAQLRAHF--GEKVFWTVIPRNV 210 (257)
T ss_dssp SHHHHHHHHHHHHH--GGGBCSCCCBCCH
T ss_pred HHHHHHHHHHHHHc--cccccCccCCCcH
Confidence 1 23445555 77776 5 77654
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=98.14 E-value=2.4e-05 Score=84.81 Aligned_cols=189 Identities=12% Similarity=0.041 Sum_probs=112.4
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHH-HhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhcccccccccc
Q 005009 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELL-LQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L-~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~ 496 (719)
.|++.+|+.+.++...+. ...+...+|.++| +++.+. .+.+++++||++|+..|++.+. -..|
T Consensus 15 ~~~i~~a~~~~~~~~~~~----~~~~~~~~l~~~~~a~~~g~--~~~~v~~~sgt~al~~al~~l~----~~~G------ 78 (377)
T 3ju7_A 15 VIEYLDELKEIDASHIYT----NYGPINQRFEQTIMSGFFQN--RGAVTTVANATLGLMAAIQLKK----RKKG------ 78 (377)
T ss_dssp GGGGHHHHHHHHHHTCCS----SSCHHHHHHHHHHHHHTSTT--CSEEEEESCHHHHHHHHHHHHS----CTTC------
T ss_pred cHHHHHHHHHHHHcCCcc----cCCHHHHHHHHHHHHHHhCC--CCeEEEeCCHHHHHHHHHHHcC----CCCc------
Confidence 478889998888764321 1246678999999 998872 2578999999999999988750 1111
Q ss_pred CCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCc-chhhhccccc
Q 005009 497 GKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLP-EWLYSKIVEH 575 (719)
Q Consensus 497 ~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P-~~~~~~~~~~ 575 (719)
..||.-...|.+ +..++...|... ..++.. +.+
T Consensus 79 ----------d~Vi~~~~~~~~-~~~~~~~~G~~~----------------------------~~v~~~~~~~------- 112 (377)
T 3ju7_A 79 ----------KYALMPSFTFPA-TPLAAIWCGLEP----------------------------YFIDISIDDW------- 112 (377)
T ss_dssp ----------CEEEEESSSCTH-HHHHHHHTTCEE----------------------------EEECBCTTTC-------
T ss_pred ----------CEEEECCCCcHH-HHHHHHHcCCEE----------------------------EEEecCCccC-------
Confidence 367777777665 333332222100 011110 001
Q ss_pred ccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCC
Q 005009 576 KDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655 (719)
Q Consensus 576 ~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gi 655 (719)
+ -| .+.+++.+.. ...++.+|+ |+ ...|...+ +++|.++|+ ||+
T Consensus 113 -----~---------~d--------~~~l~~~i~~-----~~~~tk~v~--~~--~~~G~~~~----~~~i~~la~-~~~ 156 (377)
T 3ju7_A 113 -----Y---------MD--------KTVLWDKIEE-----LKEEVAIVV--PY--ATFGSWMN----LEEYEELEK-KGV 156 (377)
T ss_dssp -----S---------BC--------HHHHHHHHHH-----HGGGEEEEC--CB--CGGGBCCC----CHHHHHHHH-TTC
T ss_pred -----C---------cC--------HHHHHHHHhc-----CCCCceEEE--EE--CCCCCccC----HHHHHHHHh-cCC
Confidence 0 01 2456666631 011256666 43 23465555 799999999 999
Q ss_pred cEEEeccccCccccCcccccccc-CCCcceeeeh----hccCCCccchheeEeC-HHHHhh
Q 005009 656 PVIFDEVFTGFWRLGVETTADLL-GCVPDIACYG----KLLTGGVIPLAATLAT-NAVFDS 710 (719)
Q Consensus 656 lLI~DEVqTGfGRtG~~~a~e~~-gv~PDIvtlg----K~LggG~~Plsavl~~-~~i~~~ 710 (719)
++|.|++|+ +|- .+..... +.-.|+.+++ |.+|+| -.|+++++ +++.+.
T Consensus 157 ~vi~D~a~a-~g~---~~~~~~~g~~~~d~~~~S~~~~K~l~~g--~gG~~~~~~~~l~~~ 211 (377)
T 3ju7_A 157 PVVVDAAPG-FGL---MNGGMHYGQDFSGMIIYSFHATKPFGIG--EGGLIYSKNEEDIQR 211 (377)
T ss_dssp CBEEECTTC-TTC---EETTEETTTTCSSEEEEECBTTSSSCCB--SCEEEEESCHHHHHH
T ss_pred EEEEECCCc-cCC---eECCEeccCCCCcEEEEECCCCCcCCCC--CcEEEEECCHHHHHH
Confidence 999999996 442 2222233 2336787775 999875 24555554 555543
|
| >1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=3.6e-06 Score=96.91 Aligned_cols=95 Identities=11% Similarity=0.001 Sum_probs=63.9
Q ss_pred cCcEEEEeCCCCCCCC----------------CCCCchhHHHHhhc----CCCEEEEEcCCCChHHHHHHHHHHHHhCCC
Q 005009 220 MEILCIVETAGGVASP----------------GPSGSLQCDLYRPF----RLPGILVGDGRLGGISGTISAYESLKLRGY 279 (719)
Q Consensus 220 ~~d~vivEGagG~~~p----------------~~~~~~~~dla~~l----~~pvilV~~~~~g~i~~~~~~~~~l~~~~~ 279 (719)
.+|+|||++++++... ..+.....++...+ ...+|+|+.....+++++..+++.++..|+
T Consensus 440 ~~D~vviD~~p~~~tl~ll~~p~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~vvlV~~p~~~~~~~a~~~~~~l~~~g~ 519 (589)
T 1ihu_A 440 GKRFVVMDTAPTGHTLLLLDATGAYHREIAKKMGEKGHFTTPMMLLQDPERTKVLLVTLPETTPVLEAANLQADLERAGI 519 (589)
T ss_dssp GTSEEEESCCCCHHHHHHHHHC------------------CCHHHHHCTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEcCCCCccHHHHHHhHHHHHHHHHHhcccchHHHHHHHHhcCCCCCEEEEEeCCCccHHHHHHHHHHHHHHCCC
Confidence 4999999999874311 00000122333322 357999999999999999999999999999
Q ss_pred cEEEEEEccCCCC---C--------------HHHHHHhhcCCCcEEecCCCCCC
Q 005009 280 DVVAVVFEDHGLV---N--------------EVPLMSYLRNRVPVLVLPPLPQD 316 (719)
Q Consensus 280 ~v~gvi~N~~~~~---~--------------~~~l~~~~~~~~pvlglP~~~~~ 316 (719)
++.|||+|++... . .+.|++.+ +.||.-+|+.++.
T Consensus 520 ~~~gvVvN~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~v~~iP~~~~e 571 (589)
T 1ihu_A 520 HPWGWIINNSLSIADTRSPLLRMRAQQELPQIESVKRQH--ASRVALVPVLASE 571 (589)
T ss_dssp CCCEEEEEEESTTSCCCCHHHHHHHHHHHHHHHHHHTTT--CSSEEEEECCSSC
T ss_pred CCCEEEEeCCcCCCCCcCHHHHHHHHHHHHHHHHHHHhc--CCcEEEccCCCCC
Confidence 9999999998321 1 12222333 6788449998763
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=1.7e-05 Score=87.73 Aligned_cols=201 Identities=8% Similarity=-0.112 Sum_probs=112.7
Q ss_pred CHHHHHHHHHhhhhcccccCCCC--CChHHHHHHHHHHhccCCCCCC----eEEEeCChHHHHHHHHHHHHHHhhc---c
Q 005009 418 QIELARDMGYTAARFGHVMFPEN--VYEPALECAELLLQGVGKGWAS----RAYFSDNGSTAIEIALKMAFRKFSF---D 488 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~--~~~~~~~Lae~L~~~~~~~~~~----rv~f~~SGsEA~E~AlKlA~r~~~~---~ 488 (719)
||.+.+++.+.++...... ..+ ..+...++.+.|+++.+.+.-. .++|+++|+||+..|+..++..+.. .
T Consensus 55 ~~~v~e~~~~a~~~~~~~~-~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~ 133 (452)
T 2dgk_A 55 DENVHKLMDLSINKNWIDK-EEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEA 133 (452)
T ss_dssp CHHHHHHHHHTTTCBTTCT-TTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccCCCCh-hhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 7899999988876532211 011 1223456666677777643111 4899999999999999988322211 0
Q ss_pred ccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcc-h
Q 005009 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE-W 567 (719)
Q Consensus 489 ~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~-~ 567 (719)
.|. ...+..||..+ .|-....++...|.. ...++... .
T Consensus 134 ~G~-----------~~~~~~vi~~~--~h~~~~~~~~~~G~~----------------------------v~~v~~~~~~ 172 (452)
T 2dgk_A 134 AGK-----------PTDKPNLVCGP--VQICWHKFARYWDVE----------------------------LREIPMRPGQ 172 (452)
T ss_dssp TTC-----------CCSCCEEEESS--CCHHHHHHHHHTTCE----------------------------EEECCCBTTB
T ss_pred cCC-----------CCCCcEEEECC--CcHHHHHHHHHcCce----------------------------EEEEecCCCC
Confidence 110 00123566554 776544433332211 01111110 0
Q ss_pred hhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEE-EccccccCCccccCCHHHHHHH
Q 005009 568 LYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALI-IEPVVHAAGGMHMVDPLFQRIL 646 (719)
Q Consensus 568 ~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI-vEPViqg~gG~~~pp~~fl~~L 646 (719)
+ .-| .+.|++.|.+ +..+|+ .-|. ...|.+.+ +++|
T Consensus 173 ~---------------------~~d--------~~~l~~~i~~--------~t~~v~~~~~~--n~tG~~~~----l~~I 209 (452)
T 2dgk_A 173 L---------------------FMD--------PKRMIEACDE--------NTIGVVPTFGV--TYTGNYEF----PQPL 209 (452)
T ss_dssp C---------------------SCC--------HHHHHHHCCT--------TEEEEECBBSC--TTTCBBCC----HHHH
T ss_pred C---------------------eEC--------HHHHHHHHhh--------CCEEEEEEcCC--cCCcccCC----HHHH
Confidence 1 001 3567777642 344444 4453 45677777 9999
Q ss_pred HHHHHhc------CCcEEEeccccCccc---cCc-cccccccCCCcceeeeh--hccCCCccchheeEeCHH
Q 005009 647 VKECQNR------KIPVIFDEVFTGFWR---LGV-ETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNA 706 (719)
Q Consensus 647 r~Lc~k~------gilLI~DEVqTGfGR---tG~-~~a~e~~gv~PDIvtlg--K~LggG~~Plsavl~~~~ 706 (719)
.++|++| |+++++||++.|+.. .++ .+.++. -..|+++++ |.+.+| .-+|+++++++
T Consensus 210 ~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~--~~~d~~~~~~hK~~~~~-~~~G~~~~~~~ 278 (452)
T 2dgk_A 210 HDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRL--PRVKSISASGHKFGLAP-LGCGWVIWRDE 278 (452)
T ss_dssp HHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTS--TTEEEEEEETTTTTCCC-SSCEEEEESSG
T ss_pred HHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCC--CCCcEEEECcccccCCC-CCeEEEEEcCH
Confidence 9999996 999999999987532 111 111111 146877664 866555 46788888753
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.08 E-value=3.2e-05 Score=87.16 Aligned_cols=216 Identities=11% Similarity=0.004 Sum_probs=120.8
Q ss_pred CHHHHHHHHHhhhhccc-----ccCCCCCChHHHHHHHHHHhccC-CC-CCCeEEEeCChHHHHHHHHHHHHHHhhcccc
Q 005009 418 QIELARDMGYTAARFGH-----VMFPENVYEPALECAELLLQGVG-KG-WASRAYFSDNGSTAIEIALKMAFRKFSFDHE 490 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~-----~~~~~~~~~~~~~Lae~L~~~~~-~~-~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G 490 (719)
..++.+++++.+..... ........+...++++.+.+..+ -. .-+.+++++++++|+..++++.. ..|
T Consensus 103 P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~-----~~g 177 (498)
T 3ihj_A 103 PEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILV-----SGG 177 (498)
T ss_dssp CHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHC-----CCC
T ss_pred CHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHc-----CCC
Confidence 56666877777765321 11112223556677777765532 10 13689999999999999998761 111
Q ss_pred ccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhh
Q 005009 491 VLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYS 570 (719)
Q Consensus 491 ~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~ 570 (719)
. ..+..|+.-.-.|.+.+ .++...|.. .+++|
T Consensus 178 d------------~~~d~Vlv~~p~y~~~~-~~~~~~g~~------------------------------~v~~~----- 209 (498)
T 3ihj_A 178 G------------KSRTGVMIPIPQYPLYS-AVISELDAI------------------------------QVNYY----- 209 (498)
T ss_dssp G------------GGSEEEEEEESCCTHHH-HHHHHTTCE------------------------------EEEEE-----
T ss_pred C------------CCCCEEEEeCCCchhHH-HHHHHcCCE------------------------------EEEee-----
Confidence 0 01246777777776543 223322211 11111
Q ss_pred cccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHH
Q 005009 571 KIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC 650 (719)
Q Consensus 571 ~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc 650 (719)
.+ .+.-| .-| .+.|++.+.+. ....++.+|++.-. +.-.|.+. +.+-+++|.++|
T Consensus 210 ---------~~-~~~~~--~~d--------~~~le~~l~~~---~~~~~~k~i~l~np-~NPTG~v~-s~~~l~~i~~la 264 (498)
T 3ihj_A 210 ---------LD-EENCW--ALN--------VNELRRAVQEA---KDHCDPKVLCIINP-GNPTGQVQ-SRKCIEDVIHFA 264 (498)
T ss_dssp ---------CB-GGGTT--BCC--------HHHHHHHHHHH---TTTSEEEEEEEESS-CTTTCCCC-CHHHHHHHHHHH
T ss_pred ---------cc-ccccC--CCC--------HHHHHHHHHhh---hccCCCeEEEEECC-CCCCCCcC-CHHHHHHHHHHH
Confidence 00 00000 001 35677777641 11124666665543 56667654 677899999999
Q ss_pred HhcCCcEEEeccccCccccC--cccccccc--CCCc----c--e---eeehhcc-C-CCccchheeE---eCHHHHhhhc
Q 005009 651 QNRKIPVIFDEVFTGFWRLG--VETTADLL--GCVP----D--I---ACYGKLL-T-GGVIPLAATL---ATNAVFDSFV 712 (719)
Q Consensus 651 ~k~gilLI~DEVqTGfGRtG--~~~a~e~~--gv~P----D--I---vtlgK~L-g-gG~~Plsavl---~~~~i~~~~~ 712 (719)
++||+++|+||++..+...+ .+..+... ++.+ | + -+++|.+ | .| +.+|.++ .++++.+.+.
T Consensus 265 ~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G-~R~G~~~~~~~~~~l~~~l~ 343 (498)
T 3ihj_A 265 WEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECG-YRGGYMEVINLHPEIKGQLV 343 (498)
T ss_dssp HHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSS-SCCEEEEEESCCHHHHHHHH
T ss_pred HHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcc-cceEEEEEecCCHHHHHHHH
Confidence 99999999999997653322 22222111 1111 1 2 2789999 4 57 6888887 5888877653
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.05 E-value=3.5e-05 Score=86.35 Aligned_cols=97 Identities=10% Similarity=-0.006 Sum_probs=60.9
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC-
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC- 680 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv- 680 (719)
+.|++.|++.. ..+....+|++.-. ....|.+.+ +++|.++|++||++|++|+++.|+.-.+..+.....|+
T Consensus 226 ~~Le~~i~~~~--~~g~~~~~vv~~~~-~t~~G~id~----l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~ 298 (481)
T 4e1o_A 226 EALQKAIEEDK--QRGLVPVFVCATLG-TTGVCAFDC----LSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIE 298 (481)
T ss_dssp HHHHHHHHHHH--HTTCEEEEEEEEBS-CTTTCCBCC----HHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGG
T ss_pred HHHHHHHHHHH--hCCCCcEEEEEecC-CCCCcCcCC----HHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcc
Confidence 45666665310 11222344444433 455677777 99999999999999999999976433333333323354
Q ss_pred Ccceeee--hhccCCCccchheeEeCHH
Q 005009 681 VPDIACY--GKLLTGGVIPLAATLATNA 706 (719)
Q Consensus 681 ~PDIvtl--gK~LggG~~Plsavl~~~~ 706 (719)
..|.+++ .|.+++- ...|++++++.
T Consensus 299 ~aDsi~~~~hK~l~~p-~g~g~l~~~~~ 325 (481)
T 4e1o_A 299 YADSFTFNPSKWMMVH-FDCTGFWVKDK 325 (481)
T ss_dssp GCSEEEECHHHHSSCC-SSCEEEEESBH
T ss_pred cCCEEEEChHHhcCCC-CceEEEEEeCH
Confidence 4688765 7888864 35667777764
|
| >1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=98.02 E-value=2.1e-05 Score=80.72 Aligned_cols=90 Identities=10% Similarity=0.136 Sum_probs=58.6
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHh----CCCcEEEEEEccCCCC-CH
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKL----RGYDVVAVVFEDHGLV-NE 294 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~----~~~~v~gvi~N~~~~~-~~ 294 (719)
.||+|||.+.+++.. ......++...---||+|+.....++..+...++.++. .++++.|+|+|++... ..
T Consensus 115 ~yD~iiiD~~~~~~~----~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~~~ 190 (269)
T 1cp2_A 115 DLDYVFYDVLGDVVC----GGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVANEY 190 (269)
T ss_dssp TCSEEEEEEECSSCS----TTTTHHHHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCCH
T ss_pred CCCEEEEeCCchhhh----hhhhhhhhHhhCCEEEEeecCchhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcchhH
Confidence 499999999765422 11222233333345888888887788877666666653 2678899999998322 22
Q ss_pred ---HHHHHhhcCCCcEEe-cCCCCC
Q 005009 295 ---VPLMSYLRNRVPVLV-LPPLPQ 315 (719)
Q Consensus 295 ---~~l~~~~~~~~pvlg-lP~~~~ 315 (719)
+.+.+.+ +.|+++ ||+.+.
T Consensus 191 ~~~~~l~~~~--~~~v~~~Ip~~~~ 213 (269)
T 1cp2_A 191 ELLDAFAKEL--GSQLIHFVPRSPM 213 (269)
T ss_dssp HHHHHHHHHH--TCCEEEEECCCHH
T ss_pred HHHHHHHHHc--CCcccccCCCCcH
Confidence 3344444 899999 888753
|
| >3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=1.4e-05 Score=80.46 Aligned_cols=88 Identities=15% Similarity=0.098 Sum_probs=62.1
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCC-CCCHHHHH
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHG-LVNEVPLM 298 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~-~~~~~~l~ 298 (719)
.+|+|||.+..++.. ....+....+ -+|+|+.....++..+....+.++..++...++|+|++. ....+.++
T Consensus 131 ~yD~viiD~pp~~~~------~~~~~l~~aD-~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~~~~~~~~~ 203 (254)
T 3kjh_A 131 KKEAVVMDMGAGIEH------LTRGTAKAVD-MMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRNIKEEKLIK 203 (254)
T ss_dssp CCSEEEEEECTTCTT------CCHHHHTTCS-EEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECCHHHHHHHH
T ss_pred CCCEEEEeCCCcccH------HHHHHHHHCC-EEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCChhHHHHHH
Confidence 499999999775532 1222222222 378888888888888888888888888888999999984 33345566
Q ss_pred HhhcCCCcEEe-cCCCCC
Q 005009 299 SYLRNRVPVLV-LPPLPQ 315 (719)
Q Consensus 299 ~~~~~~~pvlg-lP~~~~ 315 (719)
+.+. +.++.+ ||+.+.
T Consensus 204 ~~~~-~~~~~~~Ip~~~~ 220 (254)
T 3kjh_A 204 KHLP-EDKILGIIPYNEL 220 (254)
T ss_dssp HHSC-GGGEEEEEECCHH
T ss_pred HHhc-CCcccccccCcHH
Confidence 6662 488988 998653
|
| >3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.00 E-value=5.9e-05 Score=75.10 Aligned_cols=89 Identities=7% Similarity=-0.027 Sum_probs=60.3
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHh-CCCcEEEEEEccCCCCC---HH
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKL-RGYDVVAVVFEDHGLVN---EV 295 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~-~~~~v~gvi~N~~~~~~---~~ 295 (719)
.+|++||.+.+++.++ ....+....+ -+|+|+.....++..+...++.++. .+.+ .++|+|++.... ..
T Consensus 67 ~yD~viiD~p~~~~~~-----~~~~~l~~aD-~viiv~~~~~~~~~~~~~~~~~l~~~~~~~-~~vv~N~~~~~~~~~~~ 139 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE-----DLEALADGCD-LLVIPSTPDALALDALMLTIETLQKLGNNR-FRILLTIIPPYPSKDGD 139 (209)
T ss_dssp GCSEEEEEEECCCSSS-----HHHHHHHTSS-EEEEEECSSHHHHHHHHHHHHHHHHTCSSS-EEEEECSBCCTTSCHHH
T ss_pred cCCEEEEeCCCCcCcH-----HHHHHHHHCC-EEEEEecCCchhHHHHHHHHHHHHhccCCC-EEEEEEecCCccchHHH
Confidence 3999999998763332 2333333333 3778888888899999999999887 4666 789999994332 33
Q ss_pred HHHHhhcC-CCcEE-e-cCCCCC
Q 005009 296 PLMSYLRN-RVPVL-V-LPPLPQ 315 (719)
Q Consensus 296 ~l~~~~~~-~~pvl-g-lP~~~~ 315 (719)
.+.+.+++ ++|++ + ||+.+.
T Consensus 140 ~~~~~l~~~g~~v~~~~Ip~~~~ 162 (209)
T 3cwq_A 140 EARQLLTTAGLPLFKRGIKRYSA 162 (209)
T ss_dssp HHHHHHHHTTCCBCSSCCBCCTH
T ss_pred HHHHHHHHcCCchhhccCCCcHH
Confidence 44444433 78888 5 776543
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=98.00 E-value=0.0001 Score=81.90 Aligned_cols=37 Identities=16% Similarity=0.137 Sum_probs=31.6
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCC-CCceeEEc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSA-NKKFVYLK 78 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~-g~~v~~~K 78 (719)
..+.++|+|. +|+|||++++.|+.+|. ++ |++|..+.
T Consensus 99 ~~~vI~ivG~-~GvGKTT~a~~LA~~l~-----~~~G~kVllvd 136 (433)
T 2xxa_A 99 PPAVVLMAGL-QGAGKTTSVGKLGKFLR-----EKHKKKVLVVS 136 (433)
T ss_dssp SSEEEEEECS-TTSSHHHHHHHHHHHHH-----HTSCCCEEEEE
T ss_pred CCeEEEEECC-CCCCHHHHHHHHHHHHH-----HhcCCeEEEEe
Confidence 3457888886 89999999999999995 66 99998776
|
| >2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A | Back alignment and structure |
|---|
Probab=97.97 E-value=1.6e-05 Score=82.91 Aligned_cols=38 Identities=13% Similarity=0.231 Sum_probs=33.7
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
|++.|.|+++..|||||++++.|+.+|. ++|+||..+.
T Consensus 3 M~kvI~v~s~KGGvGKTT~a~nLA~~La-----~~G~~VlliD 40 (286)
T 2xj4_A 3 ETRVIVVGNEKGGAGKSTIAVHLVTALL-----YGGAKVAVID 40 (286)
T ss_dssp -CEEEEECCSSSCTTHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHHHH-----HCCCcEEEEE
Confidence 3468999999999999999999999995 7799998876
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=97.97 E-value=1e-05 Score=91.35 Aligned_cols=59 Identities=17% Similarity=0.161 Sum_probs=39.5
Q ss_pred HHHHHHHHHhcCCcEEEecccc-CccccCccccccccCCCccee--eehhccCCCccchheeEeCHH
Q 005009 643 QRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNA 706 (719)
Q Consensus 643 l~~Lr~Lc~k~gilLI~DEVqT-GfGRtG~~~a~e~~gv~PDIv--tlgK~LggG~~Plsavl~~~~ 706 (719)
+++++++|++||++||+|++|. |+--.|..- ..+. ..|++ ++.|+|+|. ..|+++++++
T Consensus 220 l~~i~~ia~~~g~~livD~Ah~~glv~~g~~~--~~~~-~aDiv~~S~hK~l~Gp--~GG~i~~~~~ 281 (490)
T 2a7v_A 220 YARMREVCDEVKAHLLADMAHISGLVAAKVIP--SPFK-HADIVTTTTHKTLRGA--RSGLIFYRKG 281 (490)
T ss_dssp HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSC--CGGG-TCSEEEEESSGGGCSC--SCEEEEEECS
T ss_pred HHHHHHHHHHcCCEEEEccccccccccCCcCC--CCCC-CCCEEEECCcccCccc--cchheeeccc
Confidence 8999999999999999999985 332223211 1111 25877 679999653 3456776653
|
| >1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=2.2e-06 Score=98.65 Aligned_cols=72 Identities=17% Similarity=0.031 Sum_probs=52.4
Q ss_pred HHHhhcCCC----EEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCCCH-----------HHHHHhhcC-----
Q 005009 244 DLYRPFRLP----GILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNE-----------VPLMSYLRN----- 303 (719)
Q Consensus 244 dla~~l~~p----vilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~~~~-----------~~l~~~~~~----- 303 (719)
++.+.+.-| +|+|+.....++.++..+++.|+..|+++.|+|+|++..... ....+++.+
T Consensus 188 ~~~~~l~d~~~t~vvlV~~~~~~~~~~~~~~~~~L~~~g~~~~gvVlN~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 267 (589)
T 1ihu_A 188 YAVEALSDPKRTRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVLPKTEAANDTLAAAIWEREQEALANLPADL 267 (589)
T ss_dssp HHHHHHHCTTTEEEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEECCGGGGSSCHHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHhcCCCCcEEEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEEcCCcCccccccCHHHHHHHHHHHHHHHHHHHhc
Confidence 444445554 899999999999999999999999999999999999833211 112223321
Q ss_pred -CCcEEecCCCCC
Q 005009 304 -RVPVLVLPPLPQ 315 (719)
Q Consensus 304 -~~pvlglP~~~~ 315 (719)
..|+..+|..+.
T Consensus 268 ~~~~i~~vPl~~~ 280 (589)
T 1ihu_A 268 AGLPTDTLFLQPV 280 (589)
T ss_dssp HTSCEEEEECCSS
T ss_pred cCCCEEEecCCCC
Confidence 677777887764
|
| >2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A | Back alignment and structure |
|---|
Probab=97.97 E-value=4.1e-05 Score=79.71 Aligned_cols=90 Identities=10% Similarity=0.098 Sum_probs=56.3
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHh----CCCcEEEEEEccCCCCCH-
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKL----RGYDVVAVVFEDHGLVNE- 294 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~----~~~~v~gvi~N~~~~~~~- 294 (719)
.+|+|||.+.+++.. +...+-++...---||+|+.....++..+...++.++. .+.++.|+|+|++.....
T Consensus 118 ~yD~ViID~~~~~~~----~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~~~ 193 (289)
T 2afh_E 118 DLDFVFYDVLGDVVC----GGFAMPIRENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDRED 193 (289)
T ss_dssp TCSEEEEEEECSSCC----TTTTHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTTHH
T ss_pred CCCEEEEeCCCcccc----chhhhhhhhhhCCEEEEEecCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCchhHH
Confidence 499999999765421 11122222222223788888877777777666666553 377899999999843222
Q ss_pred ---HHHHHhhcCCCcEEe-cCCCCC
Q 005009 295 ---VPLMSYLRNRVPVLV-LPPLPQ 315 (719)
Q Consensus 295 ---~~l~~~~~~~~pvlg-lP~~~~ 315 (719)
+.+.+.+ +.|+++ ||+.+.
T Consensus 194 ~~~~~l~~~~--g~~~l~~Ip~~~~ 216 (289)
T 2afh_E 194 ELIIALANKL--GTQMIHFVPRDNV 216 (289)
T ss_dssp HHHHHHHHHH--TSCEEEEECCCHH
T ss_pred HHHHHHHHHc--CccccccCCCchh
Confidence 2333334 899999 887643
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=97.95 E-value=3.5e-05 Score=85.54 Aligned_cols=99 Identities=12% Similarity=-0.007 Sum_probs=62.4
Q ss_pred HHHHHHH-hcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc-ccccccC
Q 005009 602 SYISQNL-LQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLG 679 (719)
Q Consensus 602 ~~le~~l-~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~-~a~e~~g 679 (719)
+.+++.| .. ....++.+|++.-. ....|.+.+ +++|.++|++||+++|+||++.++. .|.. ...+.+.
T Consensus 217 ~~l~~~i~~~----~~~~~~~~vv~~~~-nn~tG~i~~----l~~I~~la~~~g~~v~vD~A~~~~~-~g~~~~~~~~~~ 286 (456)
T 2z67_A 217 EDIENAIKKE----IELGNRPCVLSTLT-FFPPRNSDD----IVEIAKICENYDIPHIINGAYAIQN-NYYLEKLKKAFK 286 (456)
T ss_dssp HHHHHHHHHH----HHTTCCEEEEEESS-CCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTC-HHHHHHHHHHHT
T ss_pred HHHHHHHHHH----hhCCCeEEEEEeCC-CCCCCCcCC----HHHHHHHHHHcCCcEEEECcchHHH-HHhhHHHHHhhC
Confidence 4566666 31 00124555544332 355688877 9999999999999999999986552 2210 1111111
Q ss_pred CCcceeee--hhccCCCccchheeEe-CHHHHhhh
Q 005009 680 CVPDIACY--GKLLTGGVIPLAATLA-TNAVFDSF 711 (719)
Q Consensus 680 v~PDIvtl--gK~LggG~~Plsavl~-~~~i~~~~ 711 (719)
..+|++++ .|.++++ ..+|++++ ++++.+.+
T Consensus 287 ~~~D~~~~s~hK~~~~p-~g~G~l~~~~~~~~~~l 320 (456)
T 2z67_A 287 YRVDAVVSSSDKNLLTP-IGGGLVYSTDAEFIKEI 320 (456)
T ss_dssp SCCSEEEEEHHHHHCCC-SSCEEEEESCHHHHHHH
T ss_pred CCCCEEEEcCCCCcCCC-CCeEEEEEcCHHHHhhc
Confidence 16898865 8977766 56788999 46776655
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00011 Score=82.13 Aligned_cols=78 Identities=10% Similarity=-0.005 Sum_probs=52.1
Q ss_pred EEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC-Ccceeee--hhccCCCccch
Q 005009 622 ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIACY--GKLLTGGVIPL 698 (719)
Q Consensus 622 AvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv-~PDIvtl--gK~LggG~~Pl 698 (719)
.++..+ ....|.+.+ +++|.++|++||+++++|+++.|.-..+..+.....|+ ..|.+++ .|.+++. ...
T Consensus 238 v~~~~~--~t~~G~~~~----l~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p-~g~ 310 (475)
T 3k40_A 238 AVVTLG--TTNSCAFDY----LDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVN-FDC 310 (475)
T ss_dssp EEEEBS--CTTTCCBCC----HHHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCC-SSC
T ss_pred EEEEec--CCCCcCcCC----HHHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCC-Cce
Confidence 444444 355677777 99999999999999999999975323332222222344 4688765 6888765 356
Q ss_pred heeEeCHH
Q 005009 699 AATLATNA 706 (719)
Q Consensus 699 savl~~~~ 706 (719)
|++++++.
T Consensus 311 g~l~~~~~ 318 (475)
T 3k40_A 311 SAMWLKDP 318 (475)
T ss_dssp EEEEESSG
T ss_pred EEEEEeCH
Confidence 67777754
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=5.2e-05 Score=85.02 Aligned_cols=85 Identities=13% Similarity=0.032 Sum_probs=54.0
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEecccc-CccccCcc-ccccccC
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT-GFWRLGVE-TTADLLG 679 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqT-GfGRtG~~-~a~e~~g 679 (719)
+.|++.+.+ .+..+|++ .. .+.+ .+.+ +++|+++|++||++||+||+|. |+--.|.. +.+.
T Consensus 183 d~le~~i~~-------~~tklIi~-~~-sn~~-~~~d----l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~--- 245 (483)
T 1rv3_A 183 DRLEENARL-------FHPKLIIA-GT-SCYS-RNLD----YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE--- 245 (483)
T ss_dssp HHHHHHHHH-------HCCSEEEE-CC-SSCC-SCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG---
T ss_pred HHHHHHHhh-------cCCcEEEE-eC-CcCC-CcCC----HHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCC---
Confidence 567777752 13346777 43 3444 4444 8999999999999999999986 33222221 1111
Q ss_pred CCcceee--ehhccCCCccchheeEeCHH
Q 005009 680 CVPDIAC--YGKLLTGGVIPLAATLATNA 706 (719)
Q Consensus 680 v~PDIvt--lgK~LggG~~Plsavl~~~~ 706 (719)
..|+++ +.|.|+|. ..|.++++++
T Consensus 246 -~~div~~s~~K~l~Gp--rgG~i~~~~~ 271 (483)
T 1rv3_A 246 -HCHVVTTTTHKTLRGC--RAGMIFYRRG 271 (483)
T ss_dssp -TCSEEEEESSGGGCCC--SCEEEEEECS
T ss_pred -CCcEEEecCcccCCCC--CceEEEEcch
Confidence 368885 45999653 4577887764
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00027 Score=79.60 Aligned_cols=202 Identities=12% Similarity=-0.079 Sum_probs=108.3
Q ss_pred CHHHHHHHHHhhhhcccccCCCC--CChHHHHHHHHHHhccCCC----CCCeEEEeCChHHHHHHHHHHHHHHhhccc--
Q 005009 418 QIELARDMGYTAARFGHVMFPEN--VYEPALECAELLLQGVGKG----WASRAYFSDNGSTAIEIALKMAFRKFSFDH-- 489 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~--~~~~~~~Lae~L~~~~~~~----~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~-- 489 (719)
+|.+.+++.+.++...... ..+ ..+...++.+.|+++++.+ ..-...|+++|+||+..|+..+++.+..++
T Consensus 69 ~~~v~~~l~~~~~~~~~~~-~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~ 147 (502)
T 3hbx_A 69 EPECDKLIMSSINKNYVDM-DEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKA 147 (502)
T ss_dssp CHHHHHHHHHTTTCBTTCT-TTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhccCCCCh-hcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHh
Confidence 8999999998876633211 011 1223335666677776532 011345799999999999998843332211
Q ss_pred -cccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcch-
Q 005009 490 -EVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEW- 567 (719)
Q Consensus 490 -G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~- 567 (719)
|. ...+..||.-.. .|.+...+....|.. ...++..+.
T Consensus 148 ~G~-----------~~~~~~vi~~~~-~h~s~~~~~~~~G~~----------------------------~~~v~~~~~~ 187 (502)
T 3hbx_A 148 EGK-----------PVDKPNIVTGAN-VQVCWEKFARYFEVE----------------------------LKEVKLSEGY 187 (502)
T ss_dssp TTC-----------CCSCCEEEEETT-CCHHHHHHHHHTTCE----------------------------EEEECCBTTB
T ss_pred cCC-----------CCCCcEEEEcCC-chHHHHHHHHHcCce----------------------------eEEEecCCCc
Confidence 21 012335555444 454433333332210 011111100
Q ss_pred hhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHH
Q 005009 568 LYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILV 647 (719)
Q Consensus 568 ~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr 647 (719)
+ .-| .+.+++.+.+ +..+|++.-. ....|.+.+ +++|.
T Consensus 188 ~---------------------~~d--------~~~l~~~i~~--------~t~~v~~~~~-~n~tG~~~~----l~~I~ 225 (502)
T 3hbx_A 188 Y---------------------VMD--------PQQAVDMVDE--------NTICVAAILG-STLNGEFED----VKLLN 225 (502)
T ss_dssp C---------------------SCC--------HHHHHHHCCT--------TEEEEEEEBS-CTTTCCBCC----HHHHH
T ss_pred C---------------------cCC--------HHHHHHHHhh--------CCEEEEEecC-CCCCCcccC----HHHHH
Confidence 0 001 2556666642 3445554432 455688877 99999
Q ss_pred HHHHhc------CCcEEEeccccCccc---cCc-cccccccCCCcceee--ehhccCCCccchheeEeCH
Q 005009 648 KECQNR------KIPVIFDEVFTGFWR---LGV-ETTADLLGCVPDIAC--YGKLLTGGVIPLAATLATN 705 (719)
Q Consensus 648 ~Lc~k~------gilLI~DEVqTGfGR---tG~-~~a~e~~gv~PDIvt--lgK~LggG~~Plsavl~~~ 705 (719)
++|+++ |++|++|+++.|+.. .+. .+.+.. -..|+++ ..|.++++ .-+|++++++
T Consensus 226 ~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~--~~~D~v~~s~hK~l~~p-~g~G~~~~~~ 292 (502)
T 3hbx_A 226 DLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRL--PLVKSINVSGHKYGLVY-AGIGWVIWRN 292 (502)
T ss_dssp HHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTS--TTEEEEEEETTTTTCCC-SSCEEEEESS
T ss_pred HHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccCC--CCceEEEECcccccCCC-CCeEEEEEeC
Confidence 999999 999999999986531 121 111111 1457663 45666444 3556666653
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00022 Score=79.44 Aligned_cols=79 Identities=14% Similarity=-0.032 Sum_probs=52.7
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC-Ccceee--ehhccCCCccc
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIAC--YGKLLTGGVIP 697 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv-~PDIvt--lgK~LggG~~P 697 (719)
+.++.-| ....|.+.+ +++|.++|++||+++++|+++.|+-.....+.....|+ ..|.++ ..|.++.. +.
T Consensus 238 ~vv~~~~--~n~tG~~~~----l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p-~~ 310 (486)
T 1js3_A 238 FVVATLG--TTSCCSFDN----LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVN-FD 310 (486)
T ss_dssp EEEEEBS--CTTTCCBCC----HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCC-SS
T ss_pred EEEEeCC--CCCCCCCCC----HHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCC-cc
Confidence 4444445 355677777 99999999999999999999976432222121111233 358776 46988765 46
Q ss_pred hheeEeCHH
Q 005009 698 LAATLATNA 706 (719)
Q Consensus 698 lsavl~~~~ 706 (719)
+|+++++++
T Consensus 311 ~G~l~~~~~ 319 (486)
T 1js3_A 311 CSAMWVKRR 319 (486)
T ss_dssp CEEEEESCH
T ss_pred eEEEEEeCH
Confidence 788888754
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00032 Score=77.68 Aligned_cols=43 Identities=14% Similarity=0.139 Sum_probs=34.0
Q ss_pred CCCCCCCCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 29 QPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 29 ~~~~~~~~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.++.+. ....+.|+|. +|+|||+++..|+..+. .+|.+|....
T Consensus 91 ~~i~l~-~~~vi~i~G~-~GsGKTT~~~~LA~~l~-----~~g~~Vllvd 133 (425)
T 2ffh_A 91 RLPVLK-DRNLWFLVGL-QGSGKTTTAAKLALYYK-----GKGRRPLLVA 133 (425)
T ss_dssp CCCCCC-SSEEEEEECC-TTSSHHHHHHHHHHHHH-----TTTCCEEEEE
T ss_pred ccccCC-CCeEEEEECC-CCCCHHHHHHHHHHHHH-----HcCCeEEEee
Confidence 344544 4456888887 89999999999999994 6689988776
|
| >2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=97.74 E-value=3.8e-05 Score=80.14 Aligned_cols=66 Identities=11% Similarity=-0.095 Sum_probs=44.5
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHHHHHh------CCCcEEEEEEccCCCC
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYESLKL------RGYDVVAVVFEDHGLV 292 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~~l~~------~~~~v~gvi~N~~~~~ 292 (719)
.+|+|||.+.+++... ...-+. ..+ -||+|+.....++..+...++.++. .++++.|+|+|++...
T Consensus 154 ~yD~IiiD~pp~~~~~-----~~~~l~-~aD-~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~ 225 (298)
T 2oze_A 154 DYDLIIIDTVPTPSVY-----TNNAIV-ASD-YVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTD 225 (298)
T ss_dssp GCSEEEEEECSSCSHH-----HHHHHH-HCS-EEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTT
T ss_pred CCCEEEEECCCCccHH-----HHHHHH-HCC-eEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCC
Confidence 4999999997654221 112222 222 3777888877788877777777654 4788999999998443
|
| >3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00017 Score=78.66 Aligned_cols=63 Identities=16% Similarity=0.156 Sum_probs=51.2
Q ss_pred CCEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCCCCHHHHHHhhcCCCcEEecCCCCCC
Q 005009 251 LPGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGLVNEVPLMSYLRNRVPVLVLPPLPQD 316 (719)
Q Consensus 251 ~pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~~~~~~l~~~~~~~~pvlglP~~~~~ 316 (719)
.-++||.....-++..+..+++.+++.|+++.|+|+|+ .+..+.|.+.+. ++||..||..+..
T Consensus 215 t~~vlVt~pe~~sl~ea~r~~~~L~~~gi~v~gvVvN~--~~~l~~i~~~F~-~~~v~~vpl~~~e 277 (374)
T 3igf_A 215 VAAFLVTTADPLEVVSVRYLWGSAQQIGLTIGGVIQVS--SQTEGDLSAEFT-PLSVTVVPDVTKG 277 (374)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHHHHHTCCEEEEEECC--CSCCCCCGGGST-TSCEEECCCCBTT
T ss_pred eEEEEEECCCccHHHHHHHHHHHHHHcCCCccEEEEcC--HHHHHHHHHhcC-CCceEECCCCChh
Confidence 45899999999999999999999999999999999999 233333444443 7999999988764
|
| >2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0012 Score=71.28 Aligned_cols=46 Identities=15% Similarity=0.088 Sum_probs=39.8
Q ss_pred HHhhcCCC----EEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCC
Q 005009 245 LYRPFRLP----GILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHG 290 (719)
Q Consensus 245 la~~l~~p----vilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~ 290 (719)
+.+.|.-| +|+|+.....++..+...++.|+..|+++.|+|+|++.
T Consensus 226 ~~~~L~d~~~~~~vlV~~pe~~si~ea~r~~~~L~~~g~~~~gvVvN~v~ 275 (354)
T 2woj_A 226 IRQQFTDPDLTTFVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLL 275 (354)
T ss_dssp HHHHHTCTTTEEEEEEEESSHHHHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred HHHHhcCCCCcEEEEEeCCCcchHHHHHHHHHHHHHcCCCCCEEEEecCC
Confidence 33445555 89999998889999999999999999999999999985
|
| >3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0014 Score=70.14 Aligned_cols=62 Identities=15% Similarity=0.051 Sum_probs=48.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCC-CC---C--------------HHHHHHhhcCC-CcEEecCCC
Q 005009 253 GILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHG-LV---N--------------EVPLMSYLRNR-VPVLVLPPL 313 (719)
Q Consensus 253 vilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~-~~---~--------------~~~l~~~~~~~-~pvlglP~~ 313 (719)
+++|+....-.+..+..+++.|++.|+++.|||+|++. .. . .+.+.+.++ + .|+.-||+.
T Consensus 225 ~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~p~~~~~~~~~~~r~~~q~~~l~~i~~~~~-~~~~~~~~pl~ 303 (334)
T 3iqw_A 225 FVCVCIPEFLSLYETERMIQELANYGIDTHCIVVNQLLFPKPGSDCEQCTARRRMQKKYLDQIEELYD-EEFNVVKMPLL 303 (334)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCCCTTCCCHHHHHHHHHHHHHHHHHHHHHT-TTSEEEEEECC
T ss_pred EEEEECCCccHHHHHHHHHHHHHHCCCCccEEEECCCcCcccCCcCHHHHHHHHHHHHHHHHHHHhcc-CCCCEEEecCC
Confidence 89999998889999999999999999999999999973 21 1 112222222 4 899989998
Q ss_pred CC
Q 005009 314 PQ 315 (719)
Q Consensus 314 ~~ 315 (719)
+.
T Consensus 304 ~~ 305 (334)
T 3iqw_A 304 VE 305 (334)
T ss_dssp SS
T ss_pred CC
Confidence 75
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=6.4e-05 Score=79.45 Aligned_cols=75 Identities=13% Similarity=0.056 Sum_probs=52.3
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceee--ehhccCCCcc
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVI 696 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvt--lgK~LggG~~ 696 (719)
++.+|++... +...|.+.+ +|+++||+++|+||+|+.+.+. .....+ |+++ ++|.+|.+
T Consensus 141 ~~k~v~~~~~-~nptG~~~~---------~i~~~~~~~li~D~a~~~~~~~---~~~~~~----di~~~s~sK~~~~~-- 201 (360)
T 1w23_A 141 NDAYLHITSN-NTIYGTQYQ---------NFPEINHAPLIADMSSDILSRP---LKVNQF----GMIYAGAQKNLGPS-- 201 (360)
T ss_dssp TEEEEEEESE-ETTTTEECS---------SCCCCCSSCEEEECTTTTTSSC---CCGGGC----SEEEEETTTTTSCT--
T ss_pred CCCEEEEeCC-CCCcceecc---------cccccCCceEEEechhhcCCCC---cCcccC----CEEEEEcccccCCC--
Confidence 5778888876 888888764 3444899999999999754332 112222 7875 45999732
Q ss_pred chheeEeCHHHHhhhc
Q 005009 697 PLAATLATNAVFDSFV 712 (719)
Q Consensus 697 Plsavl~~~~i~~~~~ 712 (719)
.+|.+++++++.+.+.
T Consensus 202 G~G~~~~~~~~~~~~~ 217 (360)
T 1w23_A 202 GVTVVIVKKDLLNTKV 217 (360)
T ss_dssp TCEEEEEEHHHHCSCC
T ss_pred CcEEEEEcHHHHhhcc
Confidence 3788999999887654
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00029 Score=82.91 Aligned_cols=167 Identities=18% Similarity=0.207 Sum_probs=96.8
Q ss_pred ChHHHHHHHHHHhccCCCCCCeEEEeCCh-HHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCc
Q 005009 442 YEPALECAELLLQGVGKGWASRAYFSDNG-STAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (719)
Q Consensus 442 ~~~~~~Lae~L~~~~~~~~~~rv~f~~SG-sEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t 520 (719)
+.+..++.++++++++ .++++|+++| +.||.+++... .++.+.|..+...|.+.
T Consensus 194 ~g~i~eaE~~lA~~fG---a~~a~~v~nGts~An~~ai~al----------------------~~pGD~VLv~r~~H~S~ 248 (715)
T 3n75_A 194 SGPHKEAEQYIARVFN---ADRSYMVTNGTSTANKIVGMYS----------------------APAGSTILIDRNCHKSL 248 (715)
T ss_dssp BTHHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHHHHH----------------------CCTTCEEEEESSCCHHH
T ss_pred cHHHHHHHHHHHHHhC---CCCceEECcHHHHHHHHHHHHh----------------------CCCCCEEEECCCccHHH
Confidence 4567889999999998 4688888888 58998888766 12234566667777777
Q ss_pred cccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhccccccccccc-CccchhhcccCchhHHHH
Q 005009 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFC-SRDEIFYEERDSSDLASI 599 (719)
Q Consensus 521 ~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~-d~~~~~~~~~d~~~~~~~ 599 (719)
..++.++|.... ++++. .+.|. +.++ +.+ .+ |
T Consensus 249 ~~~l~lsGa~pv--------------~v~~~-------------~~~~g--------i~~~i~~~-~~----d------- 281 (715)
T 3n75_A 249 THLMMMSDVTPI--------------YFRPT-------------RNAYG--------ILGGIPQS-EF----Q------- 281 (715)
T ss_dssp HHHHHHSCCEEE--------------EECCC-------------BCTTC--------CBCCCCGG-GG----S-------
T ss_pred HHHHHHcCCEEE--------------EEecc-------------ccccc--------cccCcccc-cC----C-------
Confidence 777776653210 01000 00000 0000 000 00 0
Q ss_pred HHHHHHHHHhcCCCCCCCC-cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccc-cc-
Q 005009 600 YSSYISQNLLQNPGLKVSG-CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-AD- 676 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~-~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a-~e- 676 (719)
.+.|++.+.+.. ... ..+.|++.| ...|.+.+ +++|.++|++++ +|+||+|.+.-..|..+. ..
T Consensus 282 -~e~Le~~l~~~~---~~k~p~~vivt~p---n~~G~v~d----l~~I~ela~~~~--livDEAH~~~~~f~~~~~~~~a 348 (715)
T 3n75_A 282 -HATIAKRVKETP---NATWPVHAVITNS---TYDGLLYN----TDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCG 348 (715)
T ss_dssp -HHHHHHHHHHST---TCCSCSEEEEESS---CTTSEEEC----HHHHHHHCCCSE--EEEECTTCTTGGGSGGGTTSST
T ss_pred -HHHHHHHHhhCc---CccCceEEEEECC---CCCCccCC----HHHHHHHhCcCc--EEEccccccccccCCccccccc
Confidence 256777887421 001 125677777 34678887 899999998774 799999974222333221 11
Q ss_pred -ccCCCccee-----eehhccCC
Q 005009 677 -LLGCVPDIA-----CYGKLLTG 693 (719)
Q Consensus 677 -~~gv~PDIv-----tlgK~Lgg 693 (719)
..|..+|++ +++|+|+|
T Consensus 349 l~~g~~aD~vii~~~S~hKtL~g 371 (715)
T 3n75_A 349 MSGGRVEGKVIYETQSTHKLLAA 371 (715)
T ss_dssp TSSSCCTTCEEEEEECHHHHSSC
T ss_pred cccCcCCCEEEEEEecccccccC
Confidence 122347864 68999875
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00013 Score=78.70 Aligned_cols=77 Identities=10% Similarity=0.036 Sum_probs=50.6
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeeh--hccCCCcc
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVI 696 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~LggG~~ 696 (719)
++.+|++... +...|.+.+ ++++.++ +|+++|+||+|+.+.+. +..+ .+|+++++ |.+|.+ -
T Consensus 165 ~~~~v~~~~~-~nptG~~~~----~~~i~~~---~~~~vivD~a~~~~~~~---~~~~----~~di~~~s~sK~~~~~-g 228 (398)
T 2fyf_A 165 SVDVIAWAHN-ETSTGVAVA----VRRPEGS---DDALVVIDATSGAGGLP---VDIA----ETDAYYFAPQKNFASD-G 228 (398)
T ss_dssp TCSEEEEESE-ETTTTEECC----CCCCTTC---C-CEEEEECTTTTTTSC---CCGG----GCSEEEECTTSTTCSC-S
T ss_pred CCCEEEEeCc-CCCcceecc----hHHhhhh---cCCeEEEEeccccCCcc---cCcc----cCcEEEEecCcccCCC-C
Confidence 3456666665 777888877 3334443 99999999999754332 1111 27888654 999865 1
Q ss_pred chheeEeCHHHHhhh
Q 005009 697 PLAATLATNAVFDSF 711 (719)
Q Consensus 697 Plsavl~~~~i~~~~ 711 (719)
-+|++++++++.+.+
T Consensus 229 g~g~l~~~~~~~~~l 243 (398)
T 2fyf_A 229 GLWLAIMSPAALSRI 243 (398)
T ss_dssp SEEEEEECHHHHHHH
T ss_pred ceEEEEECHHHHHHh
Confidence 268889999987765
|
| >3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00026 Score=76.75 Aligned_cols=39 Identities=21% Similarity=0.220 Sum_probs=34.8
Q ss_pred CCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 35 LSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 35 ~~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..++.|.|++.-.|||||++|+.|+.+|. ++|+||..+=
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La-----~~g~rVlliD 179 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHA-----NMGKKVFYLN 179 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHH-----HHTCCEEEEE
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHH-----hCCCCEEEEE
Confidence 45788999999999999999999999994 6799998876
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00051 Score=81.10 Aligned_cols=66 Identities=24% Similarity=0.172 Sum_probs=42.8
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccC---ccccCc---cccccccCCC-cc-ee--eehhc
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG---FWRLGV---ETTADLLGCV-PD-IA--CYGKL 690 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTG---fGRtG~---~~a~e~~gv~-PD-Iv--tlgK~ 690 (719)
+.++..|. . .|.+.+ +++|.++|++||++||+||+|.+ |+..+. ....+.+|+. |. ++ +++|+
T Consensus 284 lviv~~pn-~--~G~v~d----l~~I~~la~~~g~~livDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~ 356 (730)
T 1c4k_A 284 LAVIQLGT-Y--DGTIYN----AHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQ 356 (730)
T ss_dssp EEEEESBC-T--TSEEEC----HHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHH
T ss_pred EEEEECCC-C--CCeecC----HHHHHHHHHHcCCeEEEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCC
Confidence 45556674 3 577777 89999999999999999999963 322111 1112233442 22 54 67999
Q ss_pred cCC
Q 005009 691 LTG 693 (719)
Q Consensus 691 Lgg 693 (719)
|+|
T Consensus 357 L~g 359 (730)
T 1c4k_A 357 QAG 359 (730)
T ss_dssp SSC
T ss_pred CCC
Confidence 864
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0017 Score=72.05 Aligned_cols=37 Identities=14% Similarity=0.052 Sum_probs=31.0
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
....++++|. +|+||||++..|+..|. ++|++|...-
T Consensus 96 ~~~vI~lvG~-~GsGKTTt~~kLA~~l~-----~~G~kVllv~ 132 (433)
T 3kl4_A 96 LPFIIMLVGV-QGSGKTTTAGKLAYFYK-----KRGYKVGLVA 132 (433)
T ss_dssp SSEEEEECCC-TTSCHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CCeEEEEECC-CCCCHHHHHHHHHHHHH-----HcCCeEEEEe
Confidence 3456888887 79999999999999995 7799998755
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0015 Score=77.55 Aligned_cols=38 Identities=13% Similarity=0.136 Sum_probs=31.1
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccC
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTG 665 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTG 665 (719)
+.++..|- -.|.+.+ +++|.++|++||++||+||+|.+
T Consensus 315 lvil~~pn---~~G~v~d----l~~I~~ia~~~~~~livDeA~~~ 352 (755)
T 2vyc_A 315 YCVVTNCT---YDGVCYN----AKEAQDLLEKTSDRLHFDEAWYG 352 (755)
T ss_dssp CEEEESSC---TTSEEEC----HHHHHHHHTTTCSEEEEECTTCT
T ss_pred EEEEECCC---CCceecC----HHHHHHHHHHcCCEEEEECcCch
Confidence 45666673 2477776 89999999999999999999974
|
| >3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.003 Score=68.09 Aligned_cols=63 Identities=14% Similarity=0.026 Sum_probs=48.1
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCC-C----C--------------HHHHHHhhcCCCcEEecCC
Q 005009 252 PGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGL-V----N--------------EVPLMSYLRNRVPVLVLPP 312 (719)
Q Consensus 252 pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~-~----~--------------~~~l~~~~~~~~pvlglP~ 312 (719)
-+|+|+....-.+..+..+++.|+..|+++.|||+|++.. . . .+.+.+.++ +.|+.-+|+
T Consensus 233 ~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~~~~~~~~~~~~~~r~~~q~~~l~~i~~~~~-~~~~~~~pl 311 (348)
T 3io3_A 233 TFICVCISEFLSLYETERMIQELMSYNMDVNSIVVNQLLFAEGDDHSCKRCESRWKMQKKYLDQMGELYE-DYHLVKMPL 311 (348)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTCCCCEEEEEEECCCC-----CHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEEC
T ss_pred EEEEEecCCccHHHHHHHHHHHHHHCCCCccEEEEcCCccccccCccCHHHHHHHHHHHHHHHHHHHHcc-CCCEEEecC
Confidence 3889999888899999999999999999999999999832 1 1 111222221 688888999
Q ss_pred CCC
Q 005009 313 LPQ 315 (719)
Q Consensus 313 ~~~ 315 (719)
.+.
T Consensus 312 ~~~ 314 (348)
T 3io3_A 312 LGC 314 (348)
T ss_dssp CSS
T ss_pred CCC
Confidence 875
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0016 Score=63.05 Aligned_cols=37 Identities=14% Similarity=0.111 Sum_probs=32.9
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
+|+.+.|+| .+|+|||+++..|++.|. ++|++|+.+|
T Consensus 3 ~~~~i~i~G-~sGsGKTTl~~~L~~~l~-----~~g~~v~~ik 39 (169)
T 1xjc_A 3 AMNVWQVVG-YKHSGKTTLMEKWVAAAV-----REGWRVGTVK 39 (169)
T ss_dssp -CCEEEEEC-CTTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CCEEEEEEC-CCCCCHHHHHHHHHHhhH-----hcCCeeeEEE
Confidence 467899999 579999999999999994 7799999999
|
| >3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0072 Score=64.13 Aligned_cols=36 Identities=22% Similarity=0.446 Sum_probs=32.0
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.+.|-|+| --||||||+|.-|..+|. ++|+||..+=
T Consensus 48 aKVIAIaG-KGGVGKTTtavNLA~aLA-----~~GkkVllID 83 (314)
T 3fwy_A 48 AKVFAVYG-KGGIGKSTTSSNLSAAFS-----ILGKRVLQIG 83 (314)
T ss_dssp CEEEEEEC-STTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred ceEEEEEC-CCccCHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 46899998 789999999999999995 8899998775
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.015 Score=61.15 Aligned_cols=39 Identities=21% Similarity=0.333 Sum_probs=31.7
Q ss_pred CCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 35 LSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 35 ~~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.....+.|+|. +|+||||++..|+..+. . ++|++|.+.-
T Consensus 103 ~~g~vi~lvG~-~GsGKTTl~~~LA~~l~---~-~~G~~V~lv~ 141 (296)
T 2px0_A 103 IHSKYIVLFGS-TGAGKTTTLAKLAAISM---L-EKHKKIAFIT 141 (296)
T ss_dssp CCSSEEEEEES-TTSSHHHHHHHHHHHHH---H-TTCCCEEEEE
T ss_pred CCCcEEEEECC-CCCCHHHHHHHHHHHHH---H-hcCCEEEEEe
Confidence 34567999998 69999999999999984 1 4798888765
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0044 Score=69.97 Aligned_cols=37 Identities=14% Similarity=0.088 Sum_probs=30.5
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..+.+.|+|. +||||||++..|+..|. ++|++|...-
T Consensus 100 ~~~vI~ivG~-~GvGKTTl~~kLA~~l~-----~~G~kVllVd 136 (504)
T 2j37_W 100 KQNVIMFVGL-QGSGKTTTCSKLAYYYQ-----RKGWKTCLIC 136 (504)
T ss_dssp --EEEEEECS-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CCeEEEEECC-CCCCHHHHHHHHHHHHH-----hCCCeEEEEe
Confidence 3457889998 79999999999999994 6699988765
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0022 Score=71.37 Aligned_cols=99 Identities=11% Similarity=-0.034 Sum_probs=61.0
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC
Q 005009 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC 680 (719)
Q Consensus 601 ~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv 680 (719)
.+.|+++|++. +.+.+++|++-|- ....|...+ +++|.++|++||++|++||.+-+.-+...-+..+.+..
T Consensus 184 ~~~le~aI~~~----~~~~~~~Vv~t~t-~~g~g~~dd----l~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~l~~~a~~~ 254 (450)
T 3bc8_A 184 LKAVEAKIQEL----GPEHILCLHSTTA-CFAPRVPDR----LEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARV 254 (450)
T ss_dssp HHHHHHHHHHH----CGGGEEEEEEESS-CCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc----CCCCEEEEEEECC-cCCCceecC----HHHHHHHHHHCCCeEEEECCCchhhhhhHhHHHHHhcc
Confidence 36788888752 2357899999885 333456666 99999999999999999999965433221111111111
Q ss_pred -Ccceeeeh--hccCCCccchheeEe-CHHHHh
Q 005009 681 -VPDIACYG--KLLTGGVIPLAATLA-TNAVFD 709 (719)
Q Consensus 681 -~PDIvtlg--K~LggG~~Plsavl~-~~~i~~ 709 (719)
..|+++++ |-+..- +.-|.+.. .++..+
T Consensus 255 ~~AD~~v~S~HK~l~a~-~~~~~l~~rd~~~~~ 286 (450)
T 3bc8_A 255 GRIDAFVQSLDKNFMVP-VGGAIIAGFNEPFIQ 286 (450)
T ss_dssp SCCCEEEEEHHHHHSCC-SSCEEEEESCHHHHH
T ss_pred cCCCEEEECCccCCCch-hccEEEEecCHHHHH
Confidence 46888654 444332 34455555 334443
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0025 Score=69.84 Aligned_cols=79 Identities=15% Similarity=0.094 Sum_probs=51.4
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEe--ccccCccccCccccccccCCCcceeee-hhccC---
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFD--EVFTGFWRLGVETTADLLGCVPDIACY-GKLLT--- 692 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~D--EVqTGfGRtG~~~a~e~~gv~PDIvtl-gK~Lg--- 692 (719)
++.+|++.-. ...|.+.+ +++|.++|++||+++|+| ++. +|-.... ..+ .+|++++ +|.+|
T Consensus 196 ~t~~v~i~~p--n~tG~~~~----l~~i~~la~~~g~~vivd~d~~a--~g~~~~~---~~~--g~D~~~~s~kk~~~~~ 262 (438)
T 1wyu_A 196 EVGAVVVQNP--NFLGALED----LGPFAEAAHGAGALFVAVADPLS--LGVLKPP---GAY--GADIAVGDGQSLGLPM 262 (438)
T ss_dssp TEEEEEEESS--CTTSBCCC----HHHHHHHHHHTTCEEEEECCTTG--GGTBCCH---HHH--TCSEEEEECTTTTCCC
T ss_pred CeEEEEEECC--CCCeEEec----HHHHHHHHHHcCCEEEEEechhh--ccCcCCC---ccC--CCCEEEECCcccCCCc
Confidence 4667776652 45677776 999999999999999955 332 3222111 122 3799887 47543
Q ss_pred --CCccchheeEeCHHHHhhh
Q 005009 693 --GGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 693 --gG~~Plsavl~~~~i~~~~ 711 (719)
+| --+|.+++++++.+.+
T Consensus 263 ~~~G-p~~G~l~~~~~~~~~l 282 (438)
T 1wyu_A 263 GFGG-PHFGFLATKKAFVRQL 282 (438)
T ss_dssp GGGC-SCCEEEEECGGGGGGC
T ss_pred cCCC-CCeeEEEEcHHHHHhC
Confidence 23 1367788999887765
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.043 Score=59.90 Aligned_cols=99 Identities=11% Similarity=0.154 Sum_probs=62.2
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEc-cccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc---cccccc
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIE-PVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV---ETTADL 677 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvE-PViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~---~~a~e~ 677 (719)
+.+++.+.+ .+ +..++++- |- +.=.|.. .+.+-+++|.++|++||+++|.||+..+|..-+. ......
T Consensus 162 ~~l~~~l~~-----~~-~~~~i~l~~~~-~NPTG~~-~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~ 233 (405)
T 3k7y_A 162 DLFLNDLRN-----IP-NGSSVILQISC-YNPCSVN-IEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRK 233 (405)
T ss_dssp HHHHHHHHH-----SC-SSCEEEECCSS-CTTTCCC-CCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHH
T ss_pred HHHHHHHHh-----CC-CCeEEEEeCCC-CCCCCCC-CCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHH
Confidence 556666653 11 22355554 43 4555665 4789999999999999999999999998843221 111111
Q ss_pred c-CCCccee---eehhccC-CCccchheeEe---CHHHHh
Q 005009 678 L-GCVPDIA---CYGKLLT-GGVIPLAATLA---TNAVFD 709 (719)
Q Consensus 678 ~-gv~PDIv---tlgK~Lg-gG~~Plsavl~---~~~i~~ 709 (719)
+ ...+.++ +|||.++ .| +-+|.+++ ++++.+
T Consensus 234 ~~~~~~~~i~~~S~SK~~~l~G-lRiG~~~~~~~~~~~~~ 272 (405)
T 3k7y_A 234 FEEKNIAFSVCQSFSKNMSLYG-ERAGALHIVCKNQEEKK 272 (405)
T ss_dssp HHTTTCCEEEEEECTTTSCCTT-TTEEEEEEECSSHHHHH
T ss_pred HHhcCCcEEEEeeCCccCCCcc-ccceEEEEEeCCHHHHH
Confidence 1 2223333 7999998 67 67887643 565544
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.03 Score=59.43 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=30.0
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEE
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~ 77 (719)
...+.|+|. +|+|||+++..|+..+. .+|.+|...
T Consensus 105 ~~vI~ivG~-~G~GKTT~~~~LA~~l~-----~~g~kVlli 139 (320)
T 1zu4_A 105 LNIFMLVGV-NGTGKTTSLAKMANYYA-----ELGYKVLIA 139 (320)
T ss_dssp CEEEEEESS-TTSSHHHHHHHHHHHHH-----HTTCCEEEE
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHH-----HCCCeEEEE
Confidence 457999998 99999999999999994 668888765
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.53 E-value=0.052 Score=56.97 Aligned_cols=42 Identities=12% Similarity=-0.005 Sum_probs=31.9
Q ss_pred CCCCCCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 31 LDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 31 ~~~~~~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
+.+......+.|+|. +|+|||+++..|+..+. .+|.+|...-
T Consensus 92 i~~~~~~~vi~i~G~-~G~GKTT~~~~la~~~~-----~~g~~v~l~~ 133 (297)
T 1j8m_F 92 VIPDKIPYVIMLVGV-QGTGKTTTAGKLAYFYK-----KKGFKVGLVG 133 (297)
T ss_dssp CSCSSSSEEEEEECS-SCSSTTHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred cccCCCCeEEEEECC-CCCCHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 433334456788885 89999999999999994 6688887654
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=96.45 E-value=0.012 Score=65.11 Aligned_cols=36 Identities=17% Similarity=0.125 Sum_probs=31.1
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
...+.|+|. +|+|||+++..|+..+. ++|++|..+-
T Consensus 99 ~~vI~ivG~-~GvGKTTla~~La~~l~-----~~G~kVllv~ 134 (432)
T 2v3c_C 99 QNVILLVGI-QGSGKTTTAAKLARYIQ-----KRGLKPALIA 134 (432)
T ss_dssp CCCEEEECC-SSSSTTHHHHHHHHHHH-----HHHCCEEEEC
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHH-----HcCCeEEEEe
Confidence 357999997 89999999999999994 6789998765
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.029 Score=59.27 Aligned_cols=42 Identities=21% Similarity=0.298 Sum_probs=32.1
Q ss_pred CCCCCC-CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEE
Q 005009 30 PLDLPL-SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (719)
Q Consensus 30 ~~~~~~-~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~ 77 (719)
++.+.. +...++|+|. +|+||||++..|+..+. .+|.+|...
T Consensus 96 ~~~~~~~~~~vi~ivG~-~GsGKTTl~~~LA~~l~-----~~g~kV~lv 138 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGV-NGTGKTTSCGKLAKMFV-----DEGKSVVLA 138 (306)
T ss_dssp CCCCCSSSCEEEEEECC-TTSSHHHHHHHHHHHHH-----HTTCCEEEE
T ss_pred CCcccCCCCeEEEEEcC-CCChHHHHHHHHHHHHH-----hcCCEEEEE
Confidence 444422 3456899998 99999999999999994 568888764
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0087 Score=66.68 Aligned_cols=98 Identities=12% Similarity=0.112 Sum_probs=61.9
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccc--cC
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL--LG 679 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~--~g 679 (719)
+.++++|++ .+.+.+++|+..|- .-.++...+ +++|.++|++|||++++||.+-+.-+...-+-.+. +|
T Consensus 203 e~le~aI~e----~ga~~i~~V~~Ttt-~y~p~~~dd----I~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~G 273 (501)
T 3hl2_A 203 KAVEAKVQE----LGPDCILCIHSTTS-CFAPRVPDR----LEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVG 273 (501)
T ss_dssp HHHHHHHHH----HCGGGEEEEEEECS-CCTTBCCCC----HHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHh----cCCCcEEEEEecCC-CCCCccccc----HHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcC
Confidence 667888875 23578999998873 222345455 99999999999999999999954322222211122 24
Q ss_pred CCcceeeeh-hccCCCccchheeEe---CHHHHhhh
Q 005009 680 CVPDIACYG-KLLTGGVIPLAATLA---TNAVFDSF 711 (719)
Q Consensus 680 v~PDIvtlg-K~LggG~~Plsavl~---~~~i~~~~ 711 (719)
..|+++.+ +-. ++.|+++-++ .+++++.+
T Consensus 274 -rAD~vVqS~HK~--llvpIGG~ii~~~d~e~l~~~ 306 (501)
T 3hl2_A 274 -RIDAFVQSLDKN--FMVPVGGAIIAGFNDSFIQEI 306 (501)
T ss_dssp -CCCEEEEEHHHH--HCCCSSCEEEEESCHHHHHHH
T ss_pred -CCcEEEeccccc--ceeecCceEEEeCCHHHHHHH
Confidence 58988764 222 2566655333 55666654
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.051 Score=56.89 Aligned_cols=43 Identities=14% Similarity=0.139 Sum_probs=32.9
Q ss_pred CCCCCCCCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 29 QPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 29 ~~~~~~~~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.++.+. ....+.|+|. +|+|||+++..|+..+. .+|.+|...-
T Consensus 91 ~~i~~~-~~~~i~i~g~-~G~GKTT~~~~la~~~~-----~~~~~v~l~~ 133 (295)
T 1ls1_A 91 RLPVLK-DRNLWFLVGL-QGSGKTTTAAKLALYYK-----GKGRRPLLVA 133 (295)
T ss_dssp CCCCCC-SSEEEEEECC-TTTTHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred ceeecC-CCeEEEEECC-CCCCHHHHHHHHHHHHH-----HcCCeEEEec
Confidence 445554 5567888885 79999999999999994 5678886653
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.012 Score=62.11 Aligned_cols=63 Identities=13% Similarity=0.117 Sum_probs=41.8
Q ss_pred CHHHHHHHHHhhhhccccc-----CCCC---CChHHHHHHHHHHhccCCCCCC-e-EEEeCChHHHHHHHHHHH
Q 005009 418 QIELARDMGYTAARFGHVM-----FPEN---VYEPALECAELLLQGVGKGWAS-R-AYFSDNGSTAIEIALKMA 481 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~-----~~~~---~~~~~~~Lae~L~~~~~~~~~~-r-v~f~~SGsEA~E~AlKlA 481 (719)
+|+|.+|+.+.+..+.... .... ..+...++.++|+++.+.+ .+ . ++++++|++|+..+++..
T Consensus 16 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~~~i~~t~g~t~a~~~~~~~l 88 (362)
T 2c0r_A 16 PLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNP-TGYKVLFIQGGASTQFAMIPMNF 88 (362)
T ss_dssp CHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCC-SSEEEEEESSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCC-CCcEEEEECCCchHHHHHHHHhc
Confidence 8999999999886531100 0001 1224567888888877743 22 5 467799999999998866
|
| >3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.066 Score=57.56 Aligned_cols=37 Identities=22% Similarity=0.426 Sum_probs=33.6
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
|+.|.|++.-.|||||++|+.|..+|. ++|+||..+=
T Consensus 1 MkvIav~s~KGGvGKTT~a~nLA~~LA-----~~G~rVLlID 37 (361)
T 3pg5_A 1 MRTISFFNNKGGVGKTTLSTNVAHYFA-----LQGKRVLYVD 37 (361)
T ss_dssp CEEEEBCCSSCCHHHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CeEEEEEcCCCCCcHHHHHHHHHHHHH-----hCCCcEEEEE
Confidence 578999999999999999999999994 7899998875
|
| >3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A | Back alignment and structure |
|---|
Probab=95.61 E-value=0.031 Score=60.91 Aligned_cols=44 Identities=9% Similarity=0.111 Sum_probs=25.4
Q ss_pred CCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCC-CCCCCCceeEEc
Q 005009 35 LSHPTFQIWSANTSLGKTLVSAGLSSSFLLSP-TSSANKKFVYLK 78 (719)
Q Consensus 35 ~~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~-~~~~g~~v~~~K 78 (719)
.+++.|.|++.-.|||||++|+.|..+|.... ..++|+||...=
T Consensus 109 ~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD 153 (403)
T 3ez9_A 109 KSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVID 153 (403)
T ss_dssp CSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEE
T ss_pred CCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEe
Confidence 35678999999999999999999999993000 002588987765
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=94.16 E-value=0.35 Score=53.09 Aligned_cols=81 Identities=11% Similarity=0.081 Sum_probs=50.0
Q ss_pred EEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc---ccccccc-CCCccee---eehhccC
Q 005009 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV---ETTADLL-GCVPDIA---CYGKLLT 692 (719)
Q Consensus 620 iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~---~~a~e~~-gv~PDIv---tlgK~Lg 692 (719)
...++.-+= +.=.|.. ++.+.|++|.++|+++++++|+||+..||.--+. .+....+ ...+.++ .|+|.++
T Consensus 191 ~~vll~~~p-~NPtG~~-~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~ 268 (420)
T 4h51_A 191 SVFILHQCA-HNPTGVD-PSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMG 268 (420)
T ss_dssp CEEEEESSS-CTTTCCC-CCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSC
T ss_pred cEEEEeCCC-CCCCCCC-CCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccc
Confidence 334444432 3444654 5899999999999999999999999999853322 1211111 1223333 6899776
Q ss_pred C-CccchheeEe
Q 005009 693 G-GVIPLAATLA 703 (719)
Q Consensus 693 g-G~~Plsavl~ 703 (719)
- | .=+|++++
T Consensus 269 ~~G-~RvG~~~~ 279 (420)
T 4h51_A 269 LYS-ERAGTLSL 279 (420)
T ss_dssp CGG-GCEEEEEE
T ss_pred ccc-CceEEEEe
Confidence 2 4 34555554
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=93.63 E-value=1.7 Score=48.79 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=27.3
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEE
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~ 77 (719)
..+.|.|. +|+||||+...|+..+. ..+.+|...
T Consensus 294 eVI~LVGp-NGSGKTTLl~~LAgll~-----~~~G~V~l~ 327 (503)
T 2yhs_A 294 FVILMVGV-NGVGKTTTIGKLARQFE-----QQGKSVMLA 327 (503)
T ss_dssp EEEEEECC-TTSSHHHHHHHHHHHHH-----HTTCCEEEE
T ss_pred eEEEEECC-CcccHHHHHHHHHHHhh-----hcCCeEEEe
Confidence 36889999 69999999999999884 456677654
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=92.65 E-value=0.08 Score=51.44 Aligned_cols=48 Identities=13% Similarity=0.120 Sum_probs=22.9
Q ss_pred ccCCCchhHHHHHHHHhcccCCCCCCCCCCCCCCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 5 RRHHYPDHHRRILLRLFHHSTFHPQPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
..||||++.....+.= .++..+ +++.++|.|. +|+|||+++..|++.+
T Consensus 2 ~~~~~~~~~~~~~~~~---~~~~~~------~~~~i~l~G~-~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 2 HHHHHHSSGVDLGTEN---LYFQSN------AMVRIFLTGY-MGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------------------CCCEEEEECC-TTSCHHHHHHHHHHHH
T ss_pred CcccCCCCCCCCCCCc---eeEecC------CCCEEEEEcC-CCCCHHHHHHHHHHHc
Confidence 3588888776543322 222222 2457999998 9999999999999998
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=92.05 E-value=0.82 Score=47.96 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=28.0
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.+.|.+-.+|+|||++++-++..+. .+|.+|.||=
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a-----~~g~~vl~~s 103 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMS-----DNDDVVNLHS 103 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH-----TTTCEEEEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHH-----HcCCeEEEEE
Confidence 4666667799999999999997774 5678888875
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=91.95 E-value=0.14 Score=49.33 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=32.6
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
+++.+.|+| -+|+|||++...|++.+. .+|++|+.+|
T Consensus 5 ~~~~i~i~G-~sGsGKTTl~~~l~~~l~-----~~g~~v~~i~ 41 (174)
T 1np6_A 5 MIPLLAFAA-WSGTGKTTLLKKLIPALC-----ARGIRPGLIK 41 (174)
T ss_dssp CCCEEEEEC-CTTSCHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred cceEEEEEe-CCCCCHHHHHHHHHHhcc-----ccCCceeEEe
Confidence 577899999 589999999999999984 6799999888
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=91.83 E-value=3.8 Score=43.37 Aligned_cols=35 Identities=17% Similarity=0.032 Sum_probs=28.2
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEE
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~ 77 (719)
-..+.|.|. +|+||||+...|+..+. ..|.+|...
T Consensus 129 g~vi~lvG~-nGaGKTTll~~Lag~l~-----~~~g~V~l~ 163 (328)
T 3e70_C 129 PYVIMFVGF-NGSGKTTTIAKLANWLK-----NHGFSVVIA 163 (328)
T ss_dssp SEEEEEECC-TTSSHHHHHHHHHHHHH-----HTTCCEEEE
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHH-----hcCCEEEEE
Confidence 346889999 89999999999999984 556677654
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=91.63 E-value=0.093 Score=50.52 Aligned_cols=38 Identities=13% Similarity=0.126 Sum_probs=32.0
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KP 79 (719)
||+.+.|+| .+|+||||++..|++.+. .+|++++.+|.
T Consensus 1 m~~~v~IvG-~SGsGKSTL~~~L~~~~~-----~~g~~~G~I~~ 38 (171)
T 2f1r_A 1 MSLILSIVG-TSDSGKTTLITRMMPILR-----ERGLRVAVVKR 38 (171)
T ss_dssp --CEEEEEE-SCHHHHHHHHHHHHHHHH-----HTTCCEEEEEC
T ss_pred CceEEEEEC-CCCCCHHHHHHHHHHHhh-----hcCCceEEEEE
Confidence 467899999 689999999999999994 66888999884
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=90.63 E-value=1.1 Score=49.39 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=28.6
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.+.|.+..+|+|||++++-++.... .+|.+|.||=
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~~a-----~~g~~vl~fS 232 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNMS-----DNDDVVNLHS 232 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHH-----HTTCEEEEEC
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHH-----HcCCEEEEEE
Confidence 3666666799999999999998884 4588999985
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.99 E-value=0.19 Score=54.51 Aligned_cols=68 Identities=6% Similarity=-0.051 Sum_probs=43.1
Q ss_pred CCCCCCHHHHHHHHHhhhhcccccCC----CCC----ChHHHHHHHHHHhccCCCCCCeEEEe-CChHHHHHHHHHHH
Q 005009 413 PDATLQIELARDMGYTAARFGHVMFP----ENV----YEPALECAELLLQGVGKGWASRAYFS-DNGSTAIEIALKMA 481 (719)
Q Consensus 413 lGH~~hP~V~~Av~~q~~~~~~~~~~----~~~----~~~~~~Lae~L~~~~~~~~~~rv~f~-~SGsEA~E~AlKlA 481 (719)
-+-- +|+|.+|+.+.+..+...... ... .+...+.-++|+++++-+.-+.++|+ .+|+||++.|++-.
T Consensus 21 ~~~~-p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l 97 (377)
T 3e77_A 21 QSML-PHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNL 97 (377)
T ss_dssp SCCC-CHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHH
T ss_pred cCCC-CHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhc
Confidence 3445 899999999988653321110 111 23344555667777664312468884 79999999999866
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=88.87 E-value=0.38 Score=45.42 Aligned_cols=35 Identities=11% Similarity=0.002 Sum_probs=29.5
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEE
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~ 77 (719)
|+.|+|+|. .|+||||++..|.+.|. ..|+.+.++
T Consensus 1 M~~I~i~G~-~GsGKsT~~~~L~~~l~-----~~g~~~~~~ 35 (194)
T 1nks_A 1 MKIGIVTGI-PGVGKSTVLAKVKEILD-----NQGINNKII 35 (194)
T ss_dssp CEEEEEEEC-TTSCHHHHHHHHHHHHH-----TTTCCEEEE
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHH-----hcCceEEEE
Confidence 357899998 89999999999999994 567777766
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=88.25 E-value=0.63 Score=49.86 Aligned_cols=76 Identities=17% Similarity=0.159 Sum_probs=42.7
Q ss_pred EEEEE-EccccccCCccccCCHHHHHHHHHHHHh-cC--CcEEEeccccCccccCccccccccCCCccee--eehhccC-
Q 005009 620 IGALI-IEPVVHAAGGMHMVDPLFQRILVKECQN-RK--IPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLT- 692 (719)
Q Consensus 620 iAAvI-vEPViqg~gG~~~pp~~fl~~Lr~Lc~k-~g--ilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlgK~Lg- 692 (719)
..+|+ .-| +.-.|.+.. +||++ |+ +++|.||++. ++.. ..+.. .. ..+|+ +++|.+|
T Consensus 158 ~k~v~l~~p--~NPtG~~~~---------~l~~~~~~~~~~ii~De~y~-~~~~-~~l~~-~~--~~~i~~~S~SK~~g~ 221 (391)
T 3bwn_A 158 PYIELVTSP--NNPDGTIRE---------TVVNRPDDDEAKVIHDFAYY-WPHY-TPITR-RQ--DHDIMLFTFSKITGH 221 (391)
T ss_dssp CEEEEEESS--CTTTCCCCC---------CCC-----CCCEEEEECTTC-STTT-SCCCC-CB--CCSEEEEEHHHHHSC
T ss_pred CEEEEECCC--CCCCchhHH---------HHHHHhhcCCCEEEEeCCCC-CCCC-Ccccc-CC--CCeEEEEechhhcCC
Confidence 34444 445 455566653 23444 66 9999999996 3211 11111 11 22343 7999997
Q ss_pred CCccchheeEe-CHHHHhhhc
Q 005009 693 GGVIPLAATLA-TNAVFDSFV 712 (719)
Q Consensus 693 gG~~Plsavl~-~~~i~~~~~ 712 (719)
.| +-+|.+++ ++++.+.+.
T Consensus 222 ~G-lRiG~~~~~~~~l~~~l~ 241 (391)
T 3bwn_A 222 AG-SRIGWALVKDKEVAKKMV 241 (391)
T ss_dssp GG-GCEEEEEECCHHHHHHHH
T ss_pred Cc-cceEEEEecCHHHHHHHH
Confidence 56 57788887 888877653
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=88.21 E-value=0.54 Score=50.23 Aligned_cols=35 Identities=23% Similarity=0.305 Sum_probs=29.4
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.+.|.+-.+|+|||++++-++..+. ..|.+|.||-
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a-----~~g~~Vl~fS 81 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSAL-----NDDRGVAVFS 81 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHH-----HTTCEEEEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHH-----HcCCeEEEEe
Confidence 3666677799999999999999884 5688999986
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=87.95 E-value=0.51 Score=45.49 Aligned_cols=33 Identities=18% Similarity=0.120 Sum_probs=24.1
Q ss_pred CCCCCCCCCCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 29 QPLDLPLSHPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 29 ~~~~~~~~~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
-|...+.+...|+|+|. .|+|||+++..|.+.+
T Consensus 12 ~~~~~~~~~~~I~l~G~-~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 12 SGLVPRGSHMRVLLLGP-PGAGKGTQAVKLAEKL 44 (201)
T ss_dssp ----CCCSCCEEEEECC-TTSSHHHHHHHHHHHH
T ss_pred ccccCCCCCeEEEEECC-CCCCHHHHHHHHHHHh
Confidence 34444444447899998 8999999999999988
|
| >3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A | Back alignment and structure |
|---|
Probab=87.51 E-value=0.39 Score=51.91 Aligned_cols=44 Identities=11% Similarity=0.141 Sum_probs=33.4
Q ss_pred CCCCeEEEEcCCCCCcHHHHHHHHHHHhhcCC-CCCCCCceeEEc
Q 005009 35 LSHPTFQIWSANTSLGKTLVSAGLSSSFLLSP-TSSANKKFVYLK 78 (719)
Q Consensus 35 ~~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~-~~~~g~~v~~~K 78 (719)
.+++.|.|++.-.|||||++++.|..+|.... ..++|+||..+=
T Consensus 106 ~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD 150 (398)
T 3ez2_A 106 SEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVID 150 (398)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEE
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEe
Confidence 35678999999999999999999999993000 002589987765
|
| >3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=87.23 E-value=1.6 Score=49.12 Aligned_cols=38 Identities=13% Similarity=0.116 Sum_probs=34.4
Q ss_pred CCCeEEEEc-CCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 36 SHPTFQIWS-ANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 36 ~~~~~~I~g-t~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
+++-||||| .=++.||-++++.|.+.|+ .+|++|...|
T Consensus 2 ~~k~i~vtggv~s~lgkgi~~as~g~ll~-----~~g~~v~~~k 40 (535)
T 3nva_A 2 PNKYIVVTGGVLSSVGKGTLVASIGMLLK-----RRGYNVTAVK 40 (535)
T ss_dssp CCEEEEEECCCSTTTTHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CceEEEEeCccccCcchHHHHHHHHHHHH-----HCCceEEEEe
Confidence 467899998 7799999999999999994 8999999999
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=86.63 E-value=4.1 Score=44.65 Aligned_cols=36 Identities=14% Similarity=0.171 Sum_probs=28.0
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.+.|.+-.+|+|||++++-++.... . +.|.+|.||=
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a---~-~~g~~vl~~s 236 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAA---L-KEGVGVGIYS 236 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHH---H-TTCCCEEEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHH---H-hCCCeEEEEE
Confidence 3555556699999999999998874 2 3588899876
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=86.29 E-value=0.74 Score=44.24 Aligned_cols=35 Identities=14% Similarity=0.216 Sum_probs=29.6
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
+.++|+|. +|+|||+++.+|+..+. ++|.++.++.
T Consensus 55 ~~~~l~G~-~GtGKT~la~~i~~~~~-----~~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGS-FGVGKTYLLAAIANELA-----KRNVSSLIVY 89 (202)
T ss_dssp CEEEEECS-TTSSHHHHHHHHHHHHH-----TTTCCEEEEE
T ss_pred CeEEEECC-CCCCHHHHHHHHHHHHH-----HcCCeEEEEE
Confidence 57999997 89999999999999994 6677877754
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=85.26 E-value=0.71 Score=42.95 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=23.2
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
||+.|+|+|. .|+|||+++..|.+.|
T Consensus 1 m~~~I~l~G~-~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 1 MTEPIFMVGA-RGCGMTTVGRELARAL 26 (173)
T ss_dssp CCCCEEEESC-TTSSHHHHHHHHHHHH
T ss_pred CCceEEEECC-CCCCHHHHHHHHHHHh
Confidence 3567999997 8999999999999988
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=85.07 E-value=0.78 Score=43.35 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=23.1
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
+++.|+|+|. +|+|||+++..|.+.+
T Consensus 4 ~~~~i~l~G~-~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGL-MGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECS-TTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECC-CCCCHHHHHHHHHHHh
Confidence 3567999999 9999999999999998
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=84.96 E-value=0.32 Score=52.06 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
+.|+|+|. |++|||+++..|++.|
T Consensus 41 ~lIvI~GP-TgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGA-TGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECS-TTSSHHHHHHHHHTTS
T ss_pred ceEEEECC-CCCCHHHHHHHHHHHC
Confidence 36899999 9999999999998887
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=84.81 E-value=7.6 Score=41.56 Aligned_cols=34 Identities=15% Similarity=0.177 Sum_probs=28.8
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.+.|.|. .|+|||+++..++..+. ..|.+|.|+-
T Consensus 63 i~~I~Gp-pGsGKSTLal~la~~~~-----~~gg~VlyId 96 (356)
T 3hr8_A 63 IVEIFGQ-ESSGKTTLALHAIAEAQ-----KMGGVAAFID 96 (356)
T ss_dssp EEEEEES-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHH-----hcCCeEEEEe
Confidence 5677777 99999999999999984 5688899875
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=84.27 E-value=7.5 Score=43.17 Aligned_cols=36 Identities=8% Similarity=-0.003 Sum_probs=28.0
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.+.+.+-.+|+|||++++-++..+. . +.|.+|.||=
T Consensus 243 ~l~li~G~pG~GKT~lal~~a~~~a---~-~~g~~vl~~s 278 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQALQWG---T-AMGKKVGLAM 278 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHT---T-TSCCCEEEEE
T ss_pred eEEEEeecCCCCchHHHHHHHHHHH---H-hcCCcEEEEe
Confidence 3555556699999999999999883 1 3388999885
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=84.15 E-value=0.79 Score=44.77 Aligned_cols=36 Identities=19% Similarity=0.008 Sum_probs=30.8
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEccc
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPI 80 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi 80 (719)
-.+++|+ .|+|||+..+.+++.+. .+|++|..+||.
T Consensus 10 i~v~~G~-mgsGKTT~ll~~a~r~~-----~~g~kV~v~k~~ 45 (191)
T 1xx6_A 10 VEVIVGP-MYSGKSEELIRRIRRAK-----IAKQKIQVFKPE 45 (191)
T ss_dssp EEEEECS-TTSSHHHHHHHHHHHHH-----HTTCCEEEEEEC
T ss_pred EEEEECC-CCCcHHHHHHHHHHHHH-----HCCCEEEEEEec
Confidence 4667766 79999999999998884 789999999985
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=83.98 E-value=0.71 Score=42.73 Aligned_cols=25 Identities=20% Similarity=0.094 Sum_probs=21.9
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
|+.|+|+|. +|+||||++..|.+.+
T Consensus 1 M~~i~l~G~-~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 1 MTLIILEGP-DCCFKSTVAAKLSKEL 25 (173)
T ss_dssp -CEEEEECS-SSSSHHHHHHHHHHHH
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHh
Confidence 457889998 9999999999999988
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=83.91 E-value=0.8 Score=45.94 Aligned_cols=36 Identities=22% Similarity=0.095 Sum_probs=30.2
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEccc
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPI 80 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi 80 (719)
.++|+|. +|+|||+..+.++..+. .+|.+|.+++|.
T Consensus 14 i~litG~-mGsGKTT~ll~~~~r~~-----~~g~kVli~~~~ 49 (223)
T 2b8t_A 14 IEFITGP-MFAGKTAELIRRLHRLE-----YADVKYLVFKPK 49 (223)
T ss_dssp EEEEECS-TTSCHHHHHHHHHHHHH-----HTTCCEEEEEEC
T ss_pred EEEEECC-CCCcHHHHHHHHHHHHH-----hcCCEEEEEEec
Confidence 4666665 79999999999998884 779999999984
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=83.28 E-value=0.84 Score=42.75 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=21.8
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
+.|+|+|. +|+|||+++..|.+.|
T Consensus 4 ~~i~l~G~-~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGG-SSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECC-TTSSHHHHHHHHHHHS
T ss_pred eEEEEECC-CCCCHHHHHHHHHHhc
Confidence 46889998 8999999999999988
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=83.23 E-value=1.1 Score=43.35 Aligned_cols=36 Identities=22% Similarity=0.146 Sum_probs=30.4
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEccc
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPI 80 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi 80 (719)
.++|+|+ .|+|||+..+.++..+. .+|++|.+++|.
T Consensus 5 i~vi~G~-~gsGKTT~ll~~~~~~~-----~~g~~v~~~~~~ 40 (184)
T 2orw_A 5 LTVITGP-MYSGKTTELLSFVEIYK-----LGKKKVAVFKPK 40 (184)
T ss_dssp EEEEEES-TTSSHHHHHHHHHHHHH-----HTTCEEEEEEEC
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHH-----HCCCeEEEEeec
Confidence 5778887 79999999988888774 678999999974
|
| >1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* | Back alignment and structure |
|---|
Probab=83.03 E-value=0.98 Score=44.49 Aligned_cols=42 Identities=14% Similarity=-0.031 Sum_probs=29.1
Q ss_pred CCCCCCCeEEEEcCCCCCcHH-HHHHHHHHHhhcCCCCCCCCceeEEccc
Q 005009 32 DLPLSHPTFQIWSANTSLGKT-LVSAGLSSSFLLSPTSSANKKFVYLKPI 80 (719)
Q Consensus 32 ~~~~~~~~~~I~gt~t~vGKT-~vs~~L~~~l~~~~~~~~g~~v~~~KPi 80 (719)
....+.+-+||+|+ .++||| .+-..+-+.. .+|++|.++||-
T Consensus 15 ~~~~~g~l~fiyG~-MgsGKTt~Ll~~i~n~~------~~~~kvl~~kp~ 57 (195)
T 1w4r_A 15 GSKTRGQIQVILGP-MFSGKSTELMRRVRRFQ------IAQYKCLVIKYA 57 (195)
T ss_dssp ----CCEEEEEEEC-TTSCHHHHHHHHHHHHH------HTTCCEEEEEET
T ss_pred CCCCceEEEEEECC-CCCcHHHHHHHHHHHHH------HcCCeEEEEccc
Confidence 33345567899998 899999 5555555554 568999999983
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=82.82 E-value=1 Score=42.43 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
.+.|+|+|. +|+|||+++..|.+.+
T Consensus 11 ~~~i~i~G~-~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGT-PGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECS-TTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeC-CCCCHHHHHHHHHHHh
Confidence 456899998 8999999999999988
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=82.68 E-value=14 Score=39.60 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=27.9
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.+.|+| ..|+|||++++-|+..+. ++|.+|.|+-
T Consensus 76 li~I~G-~pGsGKTtlal~la~~~~-----~~g~~vlyi~ 109 (366)
T 1xp8_A 76 ITEIYG-PESGGKTTLALAIVAQAQ-----KAGGTCAFID 109 (366)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred EEEEEc-CCCCChHHHHHHHHHHHH-----HCCCeEEEEE
Confidence 466666 589999999999998884 5688999987
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=82.63 E-value=1.3 Score=42.02 Aligned_cols=35 Identities=14% Similarity=0.127 Sum_probs=28.3
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..++|+|. .|+|||+++..|+..+. ..|.++.++.
T Consensus 14 ~~i~l~G~-~GsGKsT~~~~L~~~l~-----~~~~~~~~~~ 48 (186)
T 2yvu_A 14 IVVWLTGL-PGSGKTTIATRLADLLQ-----KEGYRVEVLD 48 (186)
T ss_dssp EEEEEECC-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred cEEEEEcC-CCCCHHHHHHHHHHHHH-----hcCCeEEEee
Confidence 35788888 89999999999999994 5677776653
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=82.43 E-value=0.85 Score=42.85 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=22.3
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
|+.++|+|. .|+|||+++..|.+.+
T Consensus 4 m~~i~i~G~-~GsGKsTla~~La~~l 28 (175)
T 1via_A 4 AKNIVFIGF-MGSGKSTLARALAKDL 28 (175)
T ss_dssp -CCEEEECC-TTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcC-CCCCHHHHHHHHHHHc
Confidence 567999998 8999999999999988
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=82.40 E-value=1.2 Score=41.55 Aligned_cols=25 Identities=12% Similarity=0.162 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
|..++|+|. .|+|||+++..|.+.|
T Consensus 7 ~~~i~l~G~-~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGF-MGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESC-TTSSHHHHHHHHHHHH
T ss_pred cceEEEECC-CCCCHHHHHHHHHHHh
Confidence 568999998 8999999999999988
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=82.34 E-value=0.98 Score=43.49 Aligned_cols=28 Identities=11% Similarity=0.153 Sum_probs=24.1
Q ss_pred CCCCCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 34 PLSHPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 34 ~~~~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
..+++.|+|+|. +|+||||++..|.+.+
T Consensus 15 ~~~~~~I~l~G~-~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 15 RRFPGSIVVMGV-SGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CCCSSCEEEECS-TTSCHHHHHHHHHHHH
T ss_pred CCCCeEEEEECC-CCCCHHHHHHHHHHHh
Confidence 345667999998 8999999999999988
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=81.98 E-value=1.6 Score=46.46 Aligned_cols=36 Identities=14% Similarity=0.212 Sum_probs=30.7
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.+.+.|+|. .|+|||+++..|+..+. .+|++|..+-
T Consensus 79 ~~~I~i~G~-~G~GKSTl~~~L~~~l~-----~~g~kV~vi~ 114 (355)
T 3p32_A 79 AHRVGITGV-PGVGKSTAIEALGMHLI-----ERGHRVAVLA 114 (355)
T ss_dssp SEEEEEECC-TTSSHHHHHHHHHHHHH-----TTTCCEEEEE
T ss_pred ceEEEEECC-CCCCHHHHHHHHHHHHH-----hCCCceEEEe
Confidence 347899997 99999999999999994 6789987765
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=81.71 E-value=1.2 Score=42.14 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=21.8
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
+.|+|+|. .|+|||+++..|.+.+
T Consensus 3 ~~I~l~G~-~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGL-PGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECS-TTSSHHHHHHHHHHHH
T ss_pred CeEEEECC-CCCCHHHHHHHHHHHc
Confidence 46899998 9999999999999988
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=81.53 E-value=1.6 Score=41.02 Aligned_cols=25 Identities=12% Similarity=0.049 Sum_probs=22.2
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFL 63 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~ 63 (719)
..|+|+|. +|+||||++..|.+.+.
T Consensus 4 ~~I~i~G~-~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGV-PGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECC-TTSCHHHHHHHHHHHHH
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHHH
Confidence 36889998 89999999999999983
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=80.87 E-value=1.5 Score=43.73 Aligned_cols=37 Identities=16% Similarity=0.005 Sum_probs=29.6
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccc
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQ 81 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~ 81 (719)
-.+++|+ -++|||+..++++..+. .+|++|..|||..
T Consensus 30 l~vitG~-MgsGKTT~lL~~a~r~~-----~~g~kVli~k~~~ 66 (214)
T 2j9r_A 30 IEVICGS-MFSGKSEELIRRVRRTQ-----FAKQHAIVFKPCI 66 (214)
T ss_dssp EEEEECS-TTSCHHHHHHHHHHHHH-----HTTCCEEEEECC-
T ss_pred EEEEECC-CCCcHHHHHHHHHHHHH-----HCCCEEEEEEecc
Confidence 3455554 59999999999998884 7899999999854
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=80.66 E-value=0.91 Score=42.63 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=18.4
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
+++.|+|+|. .|+|||+++..|.+.+
T Consensus 4 ~~~~I~l~G~-~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGP-FGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECC-C----CHHHHHHHHHS
T ss_pred CCeEEEEECC-CCCCHHHHHHHHHHhc
Confidence 3457899998 8999999999998887
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 719 | ||||
| d2byla1 | 404 | c.67.1.4 (A:36-439) Ornithine aminotransferase {Hu | 9e-17 | |
| d1z7da1 | 404 | c.67.1.4 (A:7-410) Ornithine aminotransferase {Pla | 2e-15 | |
| d1sffa_ | 425 | c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA | 9e-15 | |
| d1vefa1 | 387 | c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine a | 3e-13 | |
| d2gsaa_ | 427 | c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase | 5e-10 | |
| d1s0aa_ | 429 | c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxonona | 5e-09 | |
| d1zoda1 | 431 | c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {P | 1e-07 |
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 404 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 80.6 bits (198), Expect = 9e-17
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
+ A ++EP+ G+ + DP + + + C ++ I DE+ TG R G D
Sbjct: 189 VAAFMVEPIQ-GEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYEN 247
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
PDI GK L+GG+ P++A L + + +
Sbjct: 248 VRPDIVLLGKALSGGLYPVSAVLCDDDIMLTI 279
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} Length = 404 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Score = 76.7 bits (188), Expect = 2e-15
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
+ A I+EP+ G+ + + + + C+ + + DEV TG R G
Sbjct: 187 VCAFIVEPI-QGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYN 245
Query: 680 CVPDIACYGKLLTGGVIPLAATLATNAVF 708
PD+ GK L+GG P++A LA + +
Sbjct: 246 VKPDVILLGKALSGGHYPISAVLANDDIM 274
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Score = 74.9 bits (183), Expect = 9e-15
Identities = 65/333 (19%), Positives = 103/333 (30%), Gaps = 78/333 (23%)
Query: 384 GENFSVYQDQKNKFIGQQFDACASWWTQG-----PDATLQIELARDMGYTAARFGHVMFP 438
EN V+ + +++ D P ++ + + H F
Sbjct: 29 AENCRVWDVEGREYL----DFAGGIAVLNTGHLHP------KVVAAVEAQLKKLSHTCFQ 78
Query: 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498
YEP LE E++ Q V +A + GS A+E A+K+A
Sbjct: 79 VLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAA-------------- 124
Query: 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558
+A G+YHG T + +G+ M
Sbjct: 125 -----TKRSGTIAFSGAYHGRTHYTL---------------ALTGKVNPYSAGMGLMPGH 164
Query: 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSG 618
+ P L+ + + + D
Sbjct: 165 VYRALYPCPLHGISEDDAIASIHRIFKNDAAPED-------------------------- 198
Query: 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678
I A++IEPV GG + P F + L C I +I DEV +G R G + +
Sbjct: 199 -IAAIVIEPV-QGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQM 256
Query: 679 GCVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
G PD+ + K + GG PLA V D+
Sbjct: 257 GVAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAV 288
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} Length = 387 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Score = 69.8 bits (170), Expect = 3e-13
Identities = 28/80 (35%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 620 IGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679
A+I+EPV GG+ P F R + Q + +I DE+ TG R G + G
Sbjct: 178 TAAVILEPVQ-GEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFG 236
Query: 680 CVPDIACYGKLLTGGVIPLA 699
VPDI K L GGV
Sbjct: 237 IVPDILTLAKALGGGVPLGV 256
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Score = 59.9 bits (144), Expect = 5e-10
Identities = 50/333 (15%), Positives = 92/333 (27%), Gaps = 90/333 (27%)
Query: 384 GENFSVYQDQKNKFIGQQFDACASWWTQG-----PDATLQIELARDMGYTAARFGHVMFP 438
++ + N++I D +W P+ +++A + G +
Sbjct: 41 VKDAYAWDVDGNRYI----DYVGTWGPAICGHAHPEVIEALKVAMEKGTS-----FGAPC 91
Query: 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGK 498
A + + F ++G+ A L++ + G+
Sbjct: 92 ALENVLAEMVNDAV------PSIEMVRFVNSGTEACMAVLRLMRA-----------YTGR 134
Query: 499 DTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558
D K++ +G YHG + T P V +
Sbjct: 135 D--------KIIKFEGCYHGHADMFLVKAGSGVATLG-----------LPSSPGVPKKTT 175
Query: 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSG 618
L+ P + +F E
Sbjct: 176 ANTLTTPYNDLEAV-----------KALFAENPGE------------------------- 199
Query: 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678
I +I+EP+V G + D F L + ++FDEV TGF +
Sbjct: 200 -IAGVILEPIV-GNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRI-AYGGVQEKF 256
Query: 679 GCVPDIACYGKLLTGGVIPLAATLATNAVFDSF 711
G PD+ GK++ GG+ A +
Sbjct: 257 GVTPDLTTLGKIIGGGLPV-GAYGGKREIMQLV 288
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} Length = 429 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Score = 56.5 bits (135), Expect = 5e-09
Identities = 81/362 (22%), Positives = 112/362 (30%), Gaps = 77/362 (21%)
Query: 361 FWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWT--QG---PDA 415
PFT V + S E + + + D +SWW G P
Sbjct: 13 ILHPFTSMT--SPLPVYPVVS--AEGCELILSDGRRLV----DGMSSWWAAIHGYNHP-- 62
Query: 416 TLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475
+L M HVMF + PA+E L+ +
Sbjct: 63 ----QLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADS------- 111
Query: 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGF 535
+ L + K + L + YHGDT GAM P
Sbjct: 112 ----GSVAVEVAMKMALQYWQAKGEARQRF----LTFRNGYHGDTFGAMSVCDPDNSMHS 163
Query: 536 LQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSD 595
L + + P + EW +V + R EI
Sbjct: 164 LWKGYL---------PENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEI--------- 205
Query: 596 LASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKI 655
A+IIEP+V AGGM M P + + + K C I
Sbjct: 206 -------------------------AAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGI 240
Query: 656 PVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGDS 715
+I DE+ TGF R G + PDI C GK LTGG + L+ATL T V ++
Sbjct: 241 LLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGE 300
Query: 716 KK 717
Sbjct: 301 AG 302
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} Length = 431 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Score = 52.0 bits (123), Expect = 1e-07
Identities = 36/202 (17%), Positives = 63/202 (31%), Gaps = 2/202 (0%)
Query: 500 TTEKCIELKVLALKGSYHG-DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558
+ ++L + G D + A S +G+ + + +
Sbjct: 81 LSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMT 140
Query: 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSG 618
S K V + + F + + SG
Sbjct: 141 GAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSG 200
Query: 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678
+ A I EP++ + GG+ + + L ++C+ R + +I DE TG R G
Sbjct: 201 NLAAFIAEPILSS-GGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRD 259
Query: 679 GCVPDIACYGKLLTGGVIPLAA 700
G PDI K L G+ A
Sbjct: 260 GVTPDILTLSKTLGAGLPLAAI 281
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 719 | |||
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 100.0 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 100.0 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 100.0 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 100.0 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 100.0 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 100.0 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 100.0 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 100.0 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.92 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 99.87 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.85 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.76 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.72 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.58 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.42 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.32 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.05 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 98.72 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 98.69 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 98.51 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 98.43 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 98.27 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 98.25 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 98.18 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 98.16 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 98.15 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 98.14 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 98.13 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 98.07 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 98.07 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 98.01 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 98.0 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 97.97 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 97.9 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 97.89 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 97.82 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 97.67 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 97.66 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 97.61 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 97.54 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 97.54 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 97.53 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 97.5 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 97.47 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 97.45 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 97.44 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 97.44 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 97.37 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 97.35 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 97.35 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 97.31 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 97.31 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 97.29 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 97.29 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 97.22 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 97.1 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 97.09 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 97.07 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 97.07 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 97.05 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 97.02 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 97.01 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 96.99 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 96.98 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 96.95 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 96.91 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 96.68 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 96.68 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 96.64 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 96.47 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 96.45 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 96.38 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 96.07 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 96.01 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 95.87 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.82 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 95.82 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 95.81 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 95.68 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 95.62 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.38 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 95.28 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 95.24 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 95.13 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 94.94 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 94.93 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 94.91 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.86 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 94.73 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 94.65 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 94.6 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 94.14 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 93.91 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 93.22 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 93.2 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 93.05 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 92.32 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 92.31 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 91.68 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 91.32 | |
| d1vcoa2 | 272 | CTP synthase PyrG, N-terminal domain {Thermus ther | 91.07 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 90.78 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 90.66 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 90.56 | |
| d2g0ta1 | 338 | Hypothetical protein TM0796 {Thermotoga maritima [ | 90.26 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 89.44 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 89.38 | |
| d1s1ma2 | 266 | CTP synthase PyrG, N-terminal domain {Escherichia | 88.98 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 88.34 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 88.22 | |
| d2vo1a1 | 273 | CTP synthase PyrG, N-terminal domain {Human (Homo | 86.75 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 86.12 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 84.66 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 84.29 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 82.85 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 82.58 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 82.1 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 82.06 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 81.85 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 81.28 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 80.99 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 80.82 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 80.45 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 80.24 |
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.5e-57 Score=502.04 Aligned_cols=292 Identities=28% Similarity=0.407 Sum_probs=237.1
Q ss_pred hhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccc
Q 005009 356 RAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHV 435 (719)
Q Consensus 356 ~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~ 435 (719)
.+++|+||||+++... .++.++++++|. ||||.||| +||||++|+|+++|||+ ||+|++|+++|++++.+.
T Consensus 8 ~d~~h~~~p~~~~~~~--~p~~~i~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~i~~Ai~~q~~~~~~~ 78 (429)
T d1s0aa_ 8 FDQRHILHPFTSMTSP--LPVYPVVSAEGC--ELILSDGR----RLVDGMSSWWAAIHGYN-HPQLNAAMKSQIDAMSHV 78 (429)
T ss_dssp HHHHHBCCTTCCSSSC--CCCEEEEEEEBT--EEEETTSC----EEEESSTTTTTCTTCBS-CHHHHHHHHHHHHHCSCC
T ss_pred HHHHhcCCCcccCCCC--CCCcceEEeECC--EEEECCCC----EEEECcccHHHHhhcCC-cHHHHHHHHHHHHhcCCc
Confidence 5667899999987652 334457887765 89999999 99999999999999999 999999999999999887
Q ss_pred cCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCC
Q 005009 436 MFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGS 515 (719)
Q Consensus 436 ~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~s 515 (719)
++....+++..+++++|++.+|.+ +++|+|++|||||||+|+|+| |+|+.++| ..+.+||+|+++
T Consensus 79 ~~~~~~~~~~~~l~~~l~~~~~~~-~~~v~f~~sGseA~e~A~k~a-r~~~~~~g-------------~~~~~ii~~~~~ 143 (429)
T d1s0aa_ 79 MFGGITHAPAIELCRKLVAMTPQP-LECVFLADSGSVAVEVAMKMA-LQYWQAKG-------------EARQRFLTFRNG 143 (429)
T ss_dssp CCSSEECHHHHHHHHHHHHHSCTT-CCEEEEESSHHHHHHHHHHHH-HHHHHHHT-------------CCCCEEEEETTC
T ss_pred ccCCccchHHHHHHHHHHhhhccC-cceeeeccccccchhhhhhhh-hheeeccc-------------ccccEEEEecCC
Confidence 766778999999999999998876 789999999999999999999 88887764 346699999999
Q ss_pred cccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchh
Q 005009 516 YHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSD 595 (719)
Q Consensus 516 yHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~ 595 (719)
|||+|.+++++++...++.. +... ..+ .....|.+..... ...+ ...
T Consensus 144 yHG~t~~a~~~t~~~~~~~~----~~~~----~~~-------~~~~~~~~~~~~~--------~~~~----------~~~ 190 (429)
T d1s0aa_ 144 YHGDTFGAMSVCDPDNSMHS----LWKG----YLP-------ENLFAPAPQSRMD--------GEWD----------ERD 190 (429)
T ss_dssp CCCSSHHHHTTSCTTTTTGG----GGTT----TSC-------CCEEECCCCSBC---------CCCC----------GGG
T ss_pred ccccchhhhhhcCCcccccc----ccCc----ccc-------ccccccccccccc--------cccc----------hhh
Confidence 99999999999986554432 1110 000 1112222211100 0111 011
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccc
Q 005009 596 LASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA 675 (719)
Q Consensus 596 ~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~ 675 (719)
.+.+++.+. ..+++|||||+||+.+|+||+++||++||++|+++|++||++||+|||||||||||++|++
T Consensus 191 -----~~~~~~~~~-----~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~~~ 260 (429)
T d1s0aa_ 191 -----MVGFARLMA-----AHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFAC 260 (429)
T ss_dssp -----GHHHHHHHH-----HHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGG
T ss_pred -----hhhhhhhhh-----hcCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhcccccccccccccc
Confidence 234555555 3468999999999845889999999999999999999999999999999999999999999
Q ss_pred cccCCCcceeeehhccCCCccchheeEeCHHHHhhhcCC
Q 005009 676 DLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD 714 (719)
Q Consensus 676 e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~~ 714 (719)
+++|++|||+|+||+|||||+|+|++++++++++.+..+
T Consensus 261 ~~~~v~PDi~~~gK~l~gG~~p~~av~~~~~i~~~~~~~ 299 (429)
T d1s0aa_ 261 EHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNG 299 (429)
T ss_dssp GGGTCCCSEEEECGGGGTSSSCCEEEEECHHHHHHHHTS
T ss_pred ccceecccccccccccccccccccchhhHHHHHhccCCC
Confidence 999999999999999999999999999999999988653
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.9e-56 Score=495.40 Aligned_cols=270 Identities=24% Similarity=0.328 Sum_probs=220.6
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|+++++++|. |+||.||| +|||+++|+|+++|||+ ||+|++|+++|++++.+.++..+.+++..+|+++|++
T Consensus 22 ~P~~~~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~ 94 (425)
T d1sffa_ 22 HPIFADRAENC--RVWDVEGR----EYLDFAGGIAVLNTGHL-HPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQ 94 (425)
T ss_dssp EEEEEEEEEBT--EEEETTCC----EEEESSHHHHTCTTCBT-CHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHH
T ss_pred CCceEEEEecC--EEEeCCCC----EEEEcCcCHHhhcccCC-cHHHHHHHHHHHhhcCCcccccccCcHHHHHHHHHHh
Confidence 58889888776 89999999 99999999999999999 9999999999999999877667789999999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
.+|.+..++++|++|||||||+|+|+| |+|++| .+||+++++|||+|.+++++|+....+.
T Consensus 95 ~~p~~~~~~v~f~~sGseA~e~Alk~a-r~~t~r------------------~~ii~~~~~yHG~t~~~~~~t~~~~~~~ 155 (425)
T d1sffa_ 95 KVPGDFAKKTLLVTTGSEAVENAVKIA-RAATKR------------------SGTIAFSGAYHGRTHYTLALTGKVNPYS 155 (425)
T ss_dssp HSSCSSCEEEEEESSHHHHHHHHHHHH-HHHHTC------------------CEEEEETTCCCCSSHHHHHHSSCCTTTT
T ss_pred hhhhcccceeeeeccccchhhhHHHHh-hhhhcc------------------cceEeecCCCcCccccchhhcCCCCccc
Confidence 998765689999999999999999999 888765 4899999999999999999998654333
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
. +.. . .| ...+..++|.... +. . ..... ...++.+...
T Consensus 156 ~----~~~-----~-~~-----~~~~~~~~~~~~~------------~~--------~-~~~~~---~~~~~~~~~~--- 193 (425)
T d1sffa_ 156 A----GMG-----L-MP-----GHVYRALYPCPLH------------GI--------S-EDDAI---ASIHRIFKND--- 193 (425)
T ss_dssp T----TSC-----C-CC-----SSEEEECCCBGGG------------TB--------C-HHHHH---HHHHHHHHHT---
T ss_pred C----Ccc-----c-cc-----CCccccCCccccc------------cc--------c-chhhH---HHHHHHHHhc---
Confidence 1 100 0 01 0112222332111 00 0 01111 1122222211
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
...++|||||+||| ||++|+++||++||++|+++|++||++||+|||||||||||.+|+++++|++|||+|+||+||||
T Consensus 194 ~~~~~vaavi~EPi-~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~~~a~~~~gv~PDi~~~gK~l~gG 272 (425)
T d1sffa_ 194 AAPEDIAAIVIEPV-QGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGG 272 (425)
T ss_dssp CCGGGEEEEEECSB-CTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEEEECGGGGTS
T ss_pred ccccceEEEEecCc-cCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcchhhHHHhcCCCccceecccccCCC
Confidence 45678999999997 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchheeEeCHHHHhhhcCC
Q 005009 695 VIPLAATLATNAVFDSFVGD 714 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~~~ 714 (719)
| |+||+++++++++.+..+
T Consensus 273 ~-P~~av~~~~~i~~~~~~~ 291 (425)
T d1sffa_ 273 F-PLAGVTGRAEVMDAVAPG 291 (425)
T ss_dssp S-CCEEEEEEHHHHTTSCTT
T ss_pred c-ceEEEEEcHHHHHhhCCC
Confidence 5 999999999999988643
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=100.00 E-value=5.9e-56 Score=492.13 Aligned_cols=271 Identities=23% Similarity=0.304 Sum_probs=222.0
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|+++++++|. ||||.||| +|||+++|+|+++|||+ ||+|++|+++|++++.+.. ..+.+++..+||++|++
T Consensus 23 ~P~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~~-~~~~~~~~~~la~~L~~ 94 (431)
T d1zoda1 23 EPMIIERAKGS--FVYDADGR----AILDFTSGQMSAVLGHC-HPEIVSVIGEYAGKLDHLF-SEMLSRPVVDLATRLAN 94 (431)
T ss_dssp CSSCCCEEEBT--EEECTTCC----EEEETTHHHHTCTTCBT-CHHHHHHHHHHHHHCCCCC-TTCCCHHHHHHHHHHHH
T ss_pred CCCeEEEeecC--EEEECCCC----EEEEcccCHHhhhhcCC-CHHHHHHHHHHHhhccccc-cccccHHHHHHHHHHHH
Confidence 47788888876 89999999 99999999999999999 9999999999999998864 45789999999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
..+++ +++|+|+||||||||+|||+| |+|++| .+|++|+++|||+|.+++++++...++.
T Consensus 95 ~~~~~-~~~v~f~~sGseA~e~Alk~A-r~~t~r------------------~~i~~~~~~yHG~t~~~~~~~~~~~~~~ 154 (431)
T d1zoda1 95 ITPPG-LDRALLLSTGAESNEAAIRMA-KLVTGK------------------YEIVGFAQSWHGMTGAAASATYSAGRKG 154 (431)
T ss_dssp HSCTT-CCEEEEESCHHHHHHHHHHHH-HHHHTC------------------CEEEEETTCCCCSSHHHHHTCCSSCCSS
T ss_pred hCCcc-cceeeecccccchHHHHHHHH-HHhcCC------------------cceeecccccccccchhhcccccccccc
Confidence 88765 799999999999999999999 788765 4899999999999999999987653322
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
. ++ . ..+..+++.|..++..... . .......+.+.++..+..
T Consensus 155 ~---------~~----~----~~~~~~~~~~~~~~~~~~~----------------~-~~~~~~~~~~~~~~~~~~---- 196 (431)
T d1zoda1 155 V---------GP----A----AVGSFAIPAPFTYRPRFER----------------N-GAYDYLAELDYAFDLIDR---- 196 (431)
T ss_dssp S---------CC----C----CTTEEEECCCCTTSCCCEE----------------T-TEECHHHHHHHHHHHHHH----
T ss_pred c---------CC----c----ccCceeeeeeccccccccc----------------c-cchhhhhhHHHHHHHHHH----
Confidence 1 11 0 1133444555443221000 0 001111223444444443
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
.++++|||||+||| ||+||+++||++||++||++|++||++||+|||||||||||++|+++++|++|||+|+||+||||
T Consensus 197 ~~~~~iAavi~EPi-~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~~~~gv~PDi~~~gK~l~gG 275 (431)
T d1zoda1 197 QSSGNLAAFIAEPI-LSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAG 275 (431)
T ss_dssp HCCSCEEEEEECSE-ETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECHHHHTT
T ss_pred hccccccceeeccc-cccCCccCCCHHHHHHHHHHHHhcCceEEeccccccccccccccccccCCCCcchhccccccccc
Confidence 45789999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchheeEeCHHHHhhhcC
Q 005009 695 VIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~~ 713 (719)
+|++++++++++++.+..
T Consensus 276 -~p~~av~~~~~~~~~~~~ 293 (431)
T d1zoda1 276 -LPLAAIVTSAAIEERAHE 293 (431)
T ss_dssp -SSCEEEEECHHHHHHHHH
T ss_pred -cccceeeeeecchhhhhc
Confidence 599999999999887643
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.3e-55 Score=480.97 Aligned_cols=275 Identities=19% Similarity=0.239 Sum_probs=227.4
Q ss_pred ccchhhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhh
Q 005009 352 DMPKRAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAAR 431 (719)
Q Consensus 352 ~L~e~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~ 431 (719)
.+.++..++.||+|. ..|+++++++|. ||||.||| +||||++|+|+++|||+ ||+|++|+++|+++
T Consensus 7 ~~~~~~~~~~~~~~~-------p~P~~i~~~~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~i~~Av~~q~~~ 72 (404)
T d2byla1 7 DIFEREYKYGAHNAH-------PLPVALERGKGI--YLWDVEGR----KYFDFLSSISAVNQGHC-HPKIVNALKSQVDK 72 (404)
T ss_dssp HHHHHHHHHBCSCCC-------CEEEEEEEEEBT--EEEETTCC----EEEESSHHHHTCTTCBT-CHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccCCCC-------CCCceEEEeecC--EEEECCCC----EEEEecCCHHHHhhcCC-CHHHHHHHHHHHhh
Confidence 445555566666552 247888888886 79999999 99999999999999999 99999999999999
Q ss_pred cccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEE
Q 005009 432 FGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLA 511 (719)
Q Consensus 432 ~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~ 511 (719)
+.+.+. .+.++...++++++++..+ .++++|++|||||||+|+|+| |+++.+.+. ....|.+|++
T Consensus 73 ~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~v~~~~sGseA~e~Aik~a-r~~~~~~~~----------~~~~~~~i~~ 137 (404)
T d2byla1 73 LTLTSR-AFYNNVLGEYEEYITKLFN---YHKVLPMNTGVEAGETACKLA-RKWGYTVKG----------IQKYKAKIVF 137 (404)
T ss_dssp CCCCCT-TEEESSHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHHHH-HHHHHHTTC----------CCTTCCEEEE
T ss_pred CCCccc-ccccchHHHHHHhhhhccc---ccccccccCccccchhHHHHH-HHHhhhccc----------cccccccccc
Confidence 887653 3456677888888888776 579999999999999999999 777765432 1256789999
Q ss_pred EeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhccc
Q 005009 512 LKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEER 591 (719)
Q Consensus 512 ~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~ 591 (719)
+.++|||+|.++++.++.+.++.. +.+.. ++... ++++|
T Consensus 138 ~~~~~hg~t~~~~~~~~~~~~~~~--------~~p~~--------~~~~~----------------~p~~d--------- 176 (404)
T d2byla1 138 AAGNFWGRTLSAISSSTDPTSYDG--------FGPFM--------PGFDI----------------IPYND--------- 176 (404)
T ss_dssp ETTCCCCCSHHHHTTCCCHHHHTT--------SCSCC--------TTEEE----------------ECTTC---------
T ss_pred cCCCccccccceeccCCCcccccC--------CCCCC--------CCeeE----------------ecccC---------
Confidence 999999999999999876544332 11110 11112 22454
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc
Q 005009 592 DSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV 671 (719)
Q Consensus 592 d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~ 671 (719)
.+.+++.+. .++|||||+||| ||++|+++||++||++|+++|++||++||+|||||||||||+
T Consensus 177 ---------~~~l~~~l~-------~~~iAaviiEPi-~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~ 239 (404)
T d2byla1 177 ---------LPALERALQ-------DPNVAAFMVEPI-QGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGR 239 (404)
T ss_dssp ---------HHHHHHHHT-------STTEEEEEECSS-BTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS
T ss_pred ---------HHHHHHhcC-------CCCeEEEEECCc-cCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccc
Confidence 255777775 368999999998 999999999999999999999999999999999999999999
Q ss_pred cccccccCCCcceeeehhccCCCccchheeEeCHHHHhhhcC
Q 005009 672 ETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 672 ~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
+|+++++|++|||+|+||+||||++|+|++++++++++.+..
T Consensus 240 ~~a~~~~gv~PDi~~~gK~l~gG~~p~~av~~~~~i~~~~~~ 281 (404)
T d2byla1 240 WLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKP 281 (404)
T ss_dssp SSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTSCT
T ss_pred cchhhhcCCCCCEEEECchhhCCCccceeeeechhhhhccCC
Confidence 999999999999999999999999999999999999998754
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.8e-54 Score=474.13 Aligned_cols=251 Identities=22% Similarity=0.260 Sum_probs=216.5
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHh
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQ 454 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~ 454 (719)
.|++|++++|. |+||.||| +||||++|+|+++|||+ ||+|++|+++|++++.+.+ ..+.++...+|+++|.+
T Consensus 19 ~p~~i~ra~G~--~l~d~dG~----~ylD~~~g~~~~~lGh~-hp~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~l~~ 90 (387)
T d1vefa1 19 HDLLIVRGQGA--RVWDAEGN----EYIDCVGGYGVANLGHG-NPEVVEAVKRQAETLMAMP-QTLPTPMRGEFYRTLTA 90 (387)
T ss_dssp CSSCEEEEEBT--EEEETTSC----EEEESSHHHHTCTTCBT-CHHHHHHHHHHHHHCCCCC-TTSCCHHHHHHHHHHHH
T ss_pred CCceEEEeEcC--EEEECCCC----EEEEcchhHHhhhhcCC-cHHHHHHHHHHHHhhcccc-cccCCchHHHHHHHhhh
Confidence 46789998887 79999999 99999999999999999 9999999999999987654 34678999999999999
Q ss_pred ccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCC
Q 005009 455 GVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTG 534 (719)
Q Consensus 455 ~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~ 534 (719)
..+.+ +++|+|++|||||||+|||+| |.|++| .+||+++++|||+|.+++++|+.+.++.
T Consensus 91 ~~~~~-~~~v~f~~sGseA~e~Aik~A-r~~t~r------------------~~ii~~~~~yHG~t~~~~~~s~~~~~~~ 150 (387)
T d1vefa1 91 ILPPE-LNRVFPVNSGTEANEAALKFA-RAHTGR------------------KKFVAAMRGFSGRTMGSLSVTWEPKYRE 150 (387)
T ss_dssp TSCTT-EEEEEEESSHHHHHHHHHHHH-HHHHSC------------------CEEEEETTCCCCSSHHHHHTCCCHHHHG
T ss_pred hcccc-ceeeccccCchHHHHHHHHHH-Hhhccc------------------ceecccccCCCCCccceEeccCCccccC
Confidence 88765 689999999999999999999 788765 4999999999999999999998654443
Q ss_pred CCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCC
Q 005009 535 FLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGL 614 (719)
Q Consensus 535 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 614 (719)
. +.+.. +++.++ +|||. +.+++.++
T Consensus 151 ~--------~~p~~--------~~~~~~----------------p~~d~------------------~~l~~~~~----- 175 (387)
T d1vefa1 151 P--------FLPLV--------EPVEFI----------------PYNDV------------------EALKRAVD----- 175 (387)
T ss_dssp G--------GCSCS--------SCEEEE----------------CTTCH------------------HHHHHHCC-----
T ss_pred C--------CCCCC--------CCceEe----------------CCCCH------------------HHHHHhcC-----
Confidence 2 11110 111222 25552 45666553
Q ss_pred CCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCC
Q 005009 615 KVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGG 694 (719)
Q Consensus 615 ~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG 694 (719)
++|||||+||| ||++|++++|++||++|+++|++||++||+|||||||||||++|+++++|++|||+|+||+||||
T Consensus 176 ---~~iAavi~EPi-~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~~~~~~v~PDi~~~gK~l~gG 251 (387)
T d1vefa1 176 ---EETAAVILEPV-QGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTLAKALGGG 251 (387)
T ss_dssp ---TTEEEEEECSE-ETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTT
T ss_pred ---CCeEEEEEECC-CCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCCCcccccCCcCCceeeecccCCCC
Confidence 58999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchheeEeCHHHHhhhcC
Q 005009 695 VIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~~ 713 (719)
+|++++++++++++.+..
T Consensus 252 -~~~~~~~~~~~~~~~~~~ 269 (387)
T d1vefa1 252 -VPLGVAVMREEVARSMPK 269 (387)
T ss_dssp -SSCEEEEEEHHHHHTSCT
T ss_pred -ccccccccceeeeecccc
Confidence 699999999999998754
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=100.00 E-value=1.2e-53 Score=473.21 Aligned_cols=258 Identities=19% Similarity=0.264 Sum_probs=215.9
Q ss_pred CCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHH
Q 005009 374 EAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLL 453 (719)
Q Consensus 374 ~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~ 453 (719)
..|.++++++|. ||||.||| +|||+++++|++++||+ ||+|++|+++|++++.+.. ..+....++++++.
T Consensus 33 ~~P~~i~~a~G~--~l~D~~G~----~ylD~~~~~~~~~lGh~-hp~i~~ai~~~~~~~~~~~---~~~~~~~~la~~~~ 102 (427)
T d2gsaa_ 33 GQPIVFDRVKDA--YAWDVDGN----RYIDYVGTWGPAICGHA-HPEVIEALKVAMEKGTSFG---APCALENVLAEMVN 102 (427)
T ss_dssp SCCCCEEEEEBT--EEEETTSC----EEEESSGGGTTTTTCBT-CHHHHHHHHHHHTTCSCCS---SCCHHHHHHHHHHH
T ss_pred CCCcEEEEeecC--EEEECCCC----EEEEechhHHHHhccCC-cHHHHHHHHHHHHhcCccc---cchhHHHHHHHHHH
Confidence 358889998886 89999999 99999999999999999 9999999999999976643 45678889999999
Q ss_pred hccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCC
Q 005009 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (719)
Q Consensus 454 ~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~ 533 (719)
+..+. .++++|++|||||||+|+|+| |.|++| .+||+|+++|||+|.+++++++...++
T Consensus 103 ~~~~~--~~~v~f~~sGseA~e~Alk~a-r~~t~r------------------~~ii~~~~~yHG~t~~~~~~~~~~~~~ 161 (427)
T d2gsaa_ 103 DAVPS--IEMVRFVNSGTEACMAVLRLM-RAYTGR------------------DKIIKFEGCYHGHADMFLVKAGSGVAT 161 (427)
T ss_dssp HHSTT--CSEEEEESSHHHHHHHHHHHH-HHHHCC------------------CEEEEETTCCCCSCGGGCSSCCHHHHH
T ss_pred hhCCc--cccccccCCcHHHHHHHHHHH-HHhcCC------------------CeEEEEecccccCcceeeeecCCcccc
Confidence 98764 689999999999999999999 788765 489999999999999999999754322
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
.. .| ..|.+ ...+.++.+. .+++| .+.+++.++
T Consensus 162 ~~--~p---------~~~~~------~~~~~~~~~~--------~~~~~------------------~~~le~~~~---- 194 (427)
T d2gsaa_ 162 LG--LP---------SSPGV------PKKTTANTLT--------TPYND------------------LEAVKALFA---- 194 (427)
T ss_dssp TT--CC---------SCSSS------CHHHHTTEEE--------ECTTC------------------HHHHHHHHT----
T ss_pred cC--CC---------CCCCC------cccCccceec--------cCcch------------------HHHHHHHHH----
Confidence 21 00 00110 0111111110 12333 366888887
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCC
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTG 693 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~Lgg 693 (719)
+++++|||||+||| ||+||+++||++||++|+++|++||++||+||||||| |||++|+++++|++|||+|+||+|||
T Consensus 195 -~~~~~iaavi~Epi-~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~-r~g~~~~~~~~gi~PDi~~~gK~lgg 271 (427)
T d2gsaa_ 195 -ENPGEIAGVILEPI-VGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGF-RIAYGGVQEKFGVTPDLTTLGKIIGG 271 (427)
T ss_dssp -TSTTTEEEEEECSS-BCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBTTCHHHHTTCCCSEEEECGGGGT
T ss_pred -hCCCCeEEEEEcCC-cCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccc-eecccchHHhcCCCHHHHhhhhccCC
Confidence 46789999999998 9999999999999999999999999999999999999 88999999999999999999999999
Q ss_pred CccchheeEeCHHHHhhhcC
Q 005009 694 GVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~~ 713 (719)
| +|+|++++++++++.+..
T Consensus 272 G-~p~~a~~~~~~i~~~~~~ 290 (427)
T d2gsaa_ 272 G-LPVGAYGGKREIMQLVAP 290 (427)
T ss_dssp T-SCCEEEEECHHHHTTBTT
T ss_pred C-cceeeeeehHHHHHHhcc
Confidence 9 699999999999998864
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=100.00 E-value=8.3e-52 Score=455.24 Aligned_cols=272 Identities=19% Similarity=0.269 Sum_probs=203.7
Q ss_pred hhCCCccccCCCCCCCCCCCeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccc
Q 005009 356 RAGELFWWPFTQHKLVPEEAVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHV 435 (719)
Q Consensus 356 ~~~~~~~~p~~~~~~~~~~~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~ 435 (719)
.+.++.+|+|.+ .|+++++++|. ||||.||| +||||++|+|+++|||| ||+|++|+++|++++.+.
T Consensus 9 ~~~~~~~~~y~p-------~P~~i~~a~G~--~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~Ai~~q~~~~~~~ 74 (404)
T d1z7da1 9 NELKYGAHNYDP-------IPVVLKRAKGV--FVYDVNDK----RYYDFLSAYSSVNQGHC-HPNILNAMINQAKNLTIC 74 (404)
T ss_dssp HHHHHBCCCCCC-------EEEEEEEEEBT--EEEETTCC----EEEESSHHHHTTTTCBT-CHHHHHHHHHHHTTCSCC
T ss_pred HHHhcCCCCCCC-------CCceEEEeecC--EEEECCCC----EEEEccccHHHHhhhcC-cHHHHHHHHHHHHhCCCc
Confidence 334456777642 58899998887 79999999 99999999999999999 999999999999998876
Q ss_pred cCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCC
Q 005009 436 MFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGS 515 (719)
Q Consensus 436 ~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~s 515 (719)
+. .+.+.+...+++.+++..+ .++++|++||+|||++|+|+| |.++.+... ....+.+|+++.++
T Consensus 75 ~~-~~~~~~~~~~~~~~~~~~~---~~~v~~~~sgs~a~~~a~k~a-r~~~~~~~~----------~~~~~~~~~~~~~~ 139 (404)
T d1z7da1 75 SR-AFFSVPLGICERYLTNLLG---YDKVLMMNTGAEANETAYKLC-RKWGYEVKK----------IPENMAKIVVCKNN 139 (404)
T ss_dssp CT-TSEEHHHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHHHH-HHHHHHTSC----------CCTTCCEEEEETTC
T ss_pred cc-ccchHHHHHHHHhhhhccc---cceeeeeccccchHHHHHHHH-HHHHhhccc----------cccccccccccccc
Confidence 53 3445666666666666665 579999999999999999999 777655321 11456789999999
Q ss_pred cccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchh
Q 005009 516 YHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSD 595 (719)
Q Consensus 516 yHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~ 595 (719)
|||.+.++++.++...++.. + ++. .+...++| +++
T Consensus 140 ~hg~~~~~~~~~~~~~~~~~----~----~~~--------~~~~~~~~----------------~~~------------- 174 (404)
T d1z7da1 140 FSGRTLGCISASTTKKCTSN----F----GPF--------APQFSKVP----------------YDD------------- 174 (404)
T ss_dssp ------------------------------------------CEEEEC----------------TTC-------------
T ss_pred CCCCcccccccccccccccC----C----CCC--------Cccccccc----------------cch-------------
Confidence 99999999998876554432 0 100 01111111 222
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccc
Q 005009 596 LASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA 675 (719)
Q Consensus 596 ~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~ 675 (719)
.+.++..+. .++|||||+||| ||+||+++||++||++|+++|++||++||+|||||||||||++|++
T Consensus 175 -----~~~l~~~~~-------~~~iAavi~EPi-~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~~~~ 241 (404)
T d1z7da1 175 -----LEALEEELK-------DPNVCAFIVEPI-QGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCV 241 (404)
T ss_dssp -----HHHHHHHHT-------STTEEEEEECSS-BSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGG
T ss_pred -----HHHHHHHhc-------CCCEEEEEEEEE-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccccccc
Confidence 133444443 578999999998 9999999999999999999999999999999999999999999999
Q ss_pred cccCCCcceeeehhccCCCccchheeEeCHHHHhhhcCC
Q 005009 676 DLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDSFVGD 714 (719)
Q Consensus 676 e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~~~~~ 714 (719)
+++|++|||+|+||+||||++|+|++++++++++.+...
T Consensus 242 e~~gv~PDivt~gK~l~gG~~p~~~v~~~~~i~~~~~~~ 280 (404)
T d1z7da1 242 HHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPG 280 (404)
T ss_dssp GGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTCCTT
T ss_pred cccCCCCCEEEEcccccCCCCCcccccchHHHHccCCCC
Confidence 999999999999999999999999999999999988653
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=4.7e-52 Score=464.71 Aligned_cols=281 Identities=17% Similarity=0.160 Sum_probs=207.6
Q ss_pred CeEEEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCC----ChHHHHHHH
Q 005009 375 AVTVIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENV----YEPALECAE 450 (719)
Q Consensus 375 ~p~vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~----~~~~~~Lae 450 (719)
.|.++++++| +|+||.||| +||||++|+|+++|||+ ||+|++|+++|+++..+.+...+. ...+.+|++
T Consensus 35 ~p~~~~~g~G--~~l~D~dG~----~ylD~~~g~~~~~lGh~-~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~~a~~lae 107 (461)
T d1ohwa_ 35 FFCNYEESRG--NYLVDVDGN----RMLDLYSQISSIPIGYS-HPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRE 107 (461)
T ss_dssp CCBCTTTCBB--TEEEBTTSC----EEEESSHHHHTCSSCBT-CHHHHHHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHH
T ss_pred CCeEEEEeec--CEEEECCCC----EEEEcccCHHHHhhcCC-cHHHHHHHHHHHhhhhhcccccccccchHHHHHHHHH
Confidence 3556666555 589999999 99999999999999999 999999999999987665432222 334667888
Q ss_pred HHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCC-------------ccccCcceEEEEEeCCcc
Q 005009 451 LLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKD-------------TTEKCIELKVLALKGSYH 517 (719)
Q Consensus 451 ~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~-------------~~~~~~r~kII~~~~syH 517 (719)
+|.+..+.+ +++|+|+||||||||+|||+| |.|++.++. ++. .....+|.+||+|+++||
T Consensus 108 ~l~~~~~~~-~~~v~f~~sGseAve~Aik~A-r~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syH 180 (461)
T d1ohwa_ 108 SLLSVAPKG-MSQLITMACGSCSNENAFKTI-FMWYRSKER-----GQSAFSKEELETCMINQAPGCPDYSILSFMGAFH 180 (461)
T ss_dssp TGGGGCCTT-CCEEEEESSHHHHHHHHHHHH-HHHHHHHHH-----TTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCC
T ss_pred HHHhhhccC-cceeeeecchhhhhHHHHHHH-HHHhhhccc-----CcccccchhhhhhhhccccCCCCceEEEecCCcC
Confidence 887777765 789999999999999999999 677654321 000 012255779999999999
Q ss_pred cCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHH
Q 005009 518 GDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLA 597 (719)
Q Consensus 518 G~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~ 597 (719)
|+|.+++++|+.+.++.. ..+.++.+... ....+.|... +. .+.+...
T Consensus 181 G~t~~a~s~tg~~~~~~~--------~~~~~~~~~~~----~~~~~~~~~~-----------~~---------~~~~~~~ 228 (461)
T d1ohwa_ 181 GRTMGCLATTHSKAIHKI--------DIPSFDWPIAP----FPRLKYPLEE-----------FV---------KENQQEE 228 (461)
T ss_dssp CSSHHHHHTCCSCHHHHT--------TCCCCCCCEEC----CCCCCSSGGG-----------CH---------HHHHHHH
T ss_pred CCCcccccccCCcccccc--------cccccCCcccc----cccccccccc-----------cc---------cccchhh
Confidence 999999999987655442 11111111100 0011111110 00 0011222
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccc
Q 005009 598 SIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL 677 (719)
Q Consensus 598 ~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~ 677 (719)
..+.+.+++++.... .++++|||||+||| ||++|++++|++||++|+++|++||++||+|||||||||||+||++++
T Consensus 229 ~~~~~~l~~~~~~~~--~~~~~iAavivEPi-~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~e~ 305 (461)
T d1ohwa_ 229 ARCLEEVEDLIVKYR--KKKKTVAGIIVEPI-QSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEH 305 (461)
T ss_dssp HHHHHHHHHHHHHHH--HTTCCEEEEEECSS-BCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTTSSSSGGGG
T ss_pred hhhHHHHHHHHHHHH--hCCCccceeeeccc-cccccccCchhhHHHHHHHHHHhhCcceeccccccccccccccccccc
Confidence 333456666654321 35789999999998 999999999999999999999999999999999999999999999999
Q ss_pred cCC--CcceeeehhccCCCccchheeEeC
Q 005009 678 LGC--VPDIACYGKLLTGGVIPLAATLAT 704 (719)
Q Consensus 678 ~gv--~PDIvtlgK~LggG~~Plsavl~~ 704 (719)
+|+ .|||+|+||+|+||++|.++++..
T Consensus 306 ~gi~~~PDiv~~gK~l~~g~~~~~~~~~~ 334 (461)
T d1ohwa_ 306 WGLDDPADVMTFSKKMMTGGFFHKEEFRP 334 (461)
T ss_dssp GCCSSCCSEEEECGGGSSEEEEECGGGSC
T ss_pred cccccCchhhhhhhccccccccccccccc
Confidence 999 499999999999997776665544
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=8e-25 Score=239.11 Aligned_cols=229 Identities=12% Similarity=0.060 Sum_probs=172.0
Q ss_pred EEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCC----CCChHHHHHHHHHH
Q 005009 378 VIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPE----NVYEPALECAELLL 453 (719)
Q Consensus 378 vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~----~~~~~~~~Lae~L~ 453 (719)
++++++|. +++|.||+ +||||+| |++||++.||+|++|+++++++++.....+ ...+.+.+|+++|+
T Consensus 30 ~i~~~~g~--~v~~~dG~----~~l~f~s---~dYLGl~~hp~v~~a~~~a~~~~g~~~~~sr~~~g~~~~~~~lE~~lA 100 (401)
T d1fc4a_ 30 IITSAQQA--DITVADGS----HVINFCA---NNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLA 100 (401)
T ss_dssp CBCSCSSS--EEEBTTSC----EEEECCC---SCTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHH
T ss_pred eccCCCCC--eEEecCCC----EEEEEEc---cccccccCCHHHHHHHHHHHHHhCCCcccceeeccCcHHHHHHHHHHH
Confidence 56676666 79999999 9999988 889999889999999999999987654211 14678889999999
Q ss_pred hccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCC
Q 005009 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (719)
Q Consensus 454 ~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~ 533 (719)
++++ .+.++++|||++||.++++.. .++.++|..+...|.++..++.++.....+
T Consensus 101 ~~~g---~e~al~~~SG~~An~~~i~~l----------------------~~~~d~i~~d~~~h~s~~~G~~~~~a~~~~ 155 (401)
T d1fc4a_ 101 AFLG---MEDAILYSSCFDANGGLFETL----------------------LGAEDAIISDALNHASIIDGVRLCKAKRYR 155 (401)
T ss_dssp HHHT---CSEEEEESCHHHHHHTTHHHH----------------------CCTTCEEEEETTCCHHHHHHHHTSCSEEEE
T ss_pred Hhhc---CCceEEecchhhhhHHHHHHh----------------------cCCCcEEEeCCcchHHHHccccccCceEEE
Confidence 9998 579999999999999999866 123456777777777776655554321100
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
++++|.+ + .+.+.+.+.
T Consensus 156 --------------------------------------------~~~~d~~----------~-----le~~~~~~~---- 172 (401)
T d1fc4a_ 156 --------------------------------------------YANNDMQ----------E-----LEARLKEAR---- 172 (401)
T ss_dssp --------------------------------------------ECTTCHH----------H-----HHHHHHHHH----
T ss_pred --------------------------------------------EcCCChH----------H-----HHHHHHHhh----
Confidence 1134321 1 122222333
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc--cccccccCCC--ccee--ee
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETTADLLGCV--PDIA--CY 687 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~--~~a~e~~gv~--PDIv--tl 687 (719)
..+.....|++|+| +++.|.+.| |+++++||++||++||+||+|+ +|+.|. ....+++++. +||+ |+
T Consensus 173 -~~~~~~~liv~egv-~s~~G~~~~----L~~l~~L~~~~~a~LivDeah~-~g~~g~~G~G~~~~~~~~~~~dii~~tl 245 (401)
T d1fc4a_ 173 -EAGARHVLIATDGV-FSMDGVIAN----LKGVCDLADKYDALVMVDDSHA-VGFVGENGRGSHEYCDVMGRVDIITGTL 245 (401)
T ss_dssp -HTTCSSEEEEEESE-ETTTTEECC----HHHHHHHHHHTTEEEEEECTTT-TTTSSTTSCCHHHHTTCTTCCSEEEEES
T ss_pred -hcccCceEEEEcCC-CCCCCchhh----hhHHHHHHhhcCcEEEehhhhc-cccccCCCCccchhccCCCCCeEEEeec
Confidence 23456689999998 999998887 9999999999999999999997 456665 3456778874 6665 89
Q ss_pred hhccCCCccchheeEeCHHHHhhhc
Q 005009 688 GKLLTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 688 gK~LggG~~Plsavl~~~~i~~~~~ 712 (719)
+|++|| .+.|++++++++++.+.
T Consensus 246 ~Ka~gg--~~Gg~v~g~~~~~~~l~ 268 (401)
T d1fc4a_ 246 GKALGG--ASGGYTAARKEVVEWLR 268 (401)
T ss_dssp SSTTCS--SSCEEEEECHHHHHHHH
T ss_pred cccccc--CCcccccCCHHHHHHHH
Confidence 999964 35788999999998775
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=2.4e-21 Score=190.79 Aligned_cols=206 Identities=22% Similarity=0.279 Sum_probs=162.6
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcccccCCCC------CChHHHHHHhcCCCccccCCCcccc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKPIQTGYPH------DSDSRFLFTKLPSLSLRRNFPSSLI 111 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KPi~~g~~~------~~d~~~~~~~~~~~~~~~~~~~~~~ 111 (719)
|.+||+||+||||||++|++|+++|. ++|+||.++||+.+|... ..+...+.... .+
T Consensus 2 ~~~~i~gt~~GVGKTtvs~~La~aLa-----~~G~rVl~id~d~~g~~~~~~~~~~~~~~~~~~~~-~~----------- 64 (224)
T d1byia_ 2 KRYFVTGTDTEVGKTVASCALLQAAK-----AAGYRTAGYKPVASGSEKTPEGLRNSDALALQRNS-SL----------- 64 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHH-----HTTCCEEEECSEEESCBCCTTSCBCHHHHHHHHTC-SS-----------
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHH-----HCCCeEEEECccccCCCCCCCCcchhHHHHHHHhh-cc-----------
Confidence 57999999999999999999999995 889999999999887533 12333322222 10
Q ss_pred ccchhhhhhHHHhhhhccCCCCCCCCccCCcccccccccccccccCCCCCccccccccceeecccCcChHHHHhHhcCCC
Q 005009 112 LSNSILFSSLFAAKSFLSSRDLPFQPQKFNSEMYDLNFREENRISGEEDSSVSELVCKTLFAWEEAVSPHLAAERESGGV 191 (719)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~ 191 (719)
........+..+..+..+......+ ...
T Consensus 65 ---------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 92 (224)
T d1byia_ 65 ---------------------------------------------------QLDYATVNPYTFAEPTSPHIISAQE-GRP 92 (224)
T ss_dssp ---------------------------------------------------CCCHHHHCSEEESSCSCHHHHHHHH-TCC
T ss_pred ---------------------------------------------------Ccccccccccccccchhhhhhhhhh-hhh
Confidence 0111335566777777777777777 777
Q ss_pred CCHHHHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHH
Q 005009 192 VGDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAY 271 (719)
Q Consensus 192 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~ 271 (719)
.....+.+.+...... +|++++|+..++..+......+.++++....++++|++...+++.+++.++
T Consensus 93 ~~~~~~~~~~~~~~~~-------------~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~~~~~~~~~~~~~~~ 159 (224)
T d1byia_ 93 IESLVMSAGLRALEQQ-------------ADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTA 159 (224)
T ss_dssp CCHHHHHHHHHHHHTT-------------CSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHHHH
T ss_pred hhHHHHHHHHhhhhhc-------------cceEeecccccccccccccchhhcccccccceeeEEEeeccchhHHHHHHH
Confidence 8888999988887754 899999999999988888888999999999999999999999999999999
Q ss_pred HHHHhCCCcEEEEEEccCCC--CC----HHHHHHhhcCCCcEEe-cCCCCCCCcc-hhhhhhhh
Q 005009 272 ESLKLRGYDVVAVVFEDHGL--VN----EVPLMSYLRNRVPVLV-LPPLPQDSSN-DLMEWFDE 327 (719)
Q Consensus 272 ~~l~~~~~~v~gvi~N~~~~--~~----~~~l~~~~~~~~pvlg-lP~~~~~~~~-~~~~~l~~ 327 (719)
+.++..|..+.|+|+|++.. .. .+.+++.+ ++||+| ||++++..+. +..+|++.
T Consensus 160 ~~~~~~~~~~~gvv~N~~~~~~~~~~~~~~~l~~~~--gi~vlG~IP~~~~~~e~~~~~~~l~l 221 (224)
T d1byia_ 160 QVIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMI--PAPLLGEIPWLAENPENAATGKYINL 221 (224)
T ss_dssp HHHHHTTCCEEEEEEECCSSCCTTHHHHHHHHHHHS--SSCEEEEECCCTTCTTCCCCGGGCCG
T ss_pred HHHhccCCccEEEEEeCcCCCchHHHHHHHHHHHHh--CCCEEEECCCCCCCccccccccccCc
Confidence 99999999999999999832 22 33444445 999999 9998877544 56666654
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=4e-21 Score=208.29 Aligned_cols=225 Identities=15% Similarity=0.093 Sum_probs=175.4
Q ss_pred EEEeecCCceEEEeCCCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhccccc----CCCCCChHHHHHHHHHH
Q 005009 378 VIDSRCGENFSVYQDQKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLL 453 (719)
Q Consensus 378 vi~~~~G~g~~l~D~dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~----~~~~~~~~~~~Lae~L~ 453 (719)
+++++.|. |+. .||+ +||||+| |++||.+.||+|++|+.+++++++... .....++.+.+|+++|+
T Consensus 24 ~~~~~~g~--~i~-~~g~----~~l~f~s---~dYLGl~~~p~v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA 93 (383)
T d1bs0a_ 24 PVAQGAGR--WLV-ADDR----QYLNFSS---NDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELA 93 (383)
T ss_dssp CCSBCSSS--EEE-ETTE----EEEECSC---CCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHH
T ss_pred ccCCCCCC--eEE-ECCe----EEEEEEc---ccccccCCCHHHHHHHHHHHHHhCCCCCccccccCcchHHHHHHHHHH
Confidence 45666676 554 8999 9999999 899999879999999999999987643 12235788999999999
Q ss_pred hccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCC
Q 005009 454 QGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYT 533 (719)
Q Consensus 454 ~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~ 533 (719)
++++ .+.+++++||+.||..++... .++..+|..+...|.+...+..+++...
T Consensus 94 ~~~g---~e~al~~~SG~~an~~~i~al----------------------~~~~d~v~~d~~~h~si~~g~~~~~~~~-- 146 (383)
T d1bs0a_ 94 EWLG---YSRALLFISGFAANQAVIAAM----------------------MAKEDRIAADRLSHASLLEAASLSPSQL-- 146 (383)
T ss_dssp HHHT---CSEEEEESCHHHHHHHHHHHH----------------------CCTTCEEEEETTCCHHHHHHHHTSSSEE--
T ss_pred HhcC---CCceEEecccchhhHHHHHhh----------------------cCCCceEEeeccccHHHhhccccCCCcc--
Confidence 9998 479999999999999999876 2345788899999998877766543210
Q ss_pred CCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCC
Q 005009 534 GFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPG 613 (719)
Q Consensus 534 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~ 613 (719)
+.+ ++||. +.+++.+.+
T Consensus 147 ----------------------------~~~--------------~hnd~------------------~~le~~l~~--- 163 (383)
T d1bs0a_ 147 ----------------------------RRF--------------AHNDV------------------THLARLLAS--- 163 (383)
T ss_dssp ----------------------------EEE--------------CTTCH------------------HHHHHHHHS---
T ss_pred ----------------------------eEe--------------cchHH------------------HHHHHHhcc---
Confidence 111 14553 557777764
Q ss_pred CCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc--cccccccCCCccee--eehh
Q 005009 614 LKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETTADLLGCVPDIA--CYGK 689 (719)
Q Consensus 614 ~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~--~~a~e~~gv~PDIv--tlgK 689 (719)
.+.+...|++|.+ .++.|.+.| +++|.++|++||++||+||+|+ +|-.|+ ...++++++.+|++ ++||
T Consensus 164 --~~~~~~~vv~e~v-~s~~G~i~p----l~~l~~l~~~~~~~livDeah~-~gv~G~~g~G~~~~~~~~~~~~~~t~~k 235 (383)
T d1bs0a_ 164 --PCPGQQMVVTEGV-FSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHG-TGVIGEQGRGSCWLQKVKPELLVVTFGK 235 (383)
T ss_dssp --CCSSCEEEEEESB-CTTTCCBCC----HHHHHHHHHHTTCEEEEECTTT-TTTSSGGGCCHHHHTTCCCSEEEEESSS
T ss_pred --cCCCceEEEecCC-CCCCCcccc----hhHHHHHHHhcCcEEEeeccee-eeecCCcccchHHHcCCccccccccccc
Confidence 3445568999998 999999998 9999999999999999999996 454454 23468899999987 5777
Q ss_pred ccCCCccchheeEeCHHHHhhhcC
Q 005009 690 LLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 690 ~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
++|+ +.|+++++.++.+.+..
T Consensus 236 a~g~---~Gg~v~~~~~~~~~l~~ 256 (383)
T d1bs0a_ 236 GFGV---SGAAVLCSSTVADYLLQ 256 (383)
T ss_dssp TTSS---CCEEEEECHHHHHHHHH
T ss_pred cccc---cccccccchhHHHHHHh
Confidence 7764 35679999999887753
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.76 E-value=1.5e-18 Score=188.49 Aligned_cols=213 Identities=11% Similarity=-0.023 Sum_probs=163.1
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhccccc----CCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM----FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIE 475 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~----~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E 475 (719)
+++||+| |++||.+.||+|++|+.+.+++++... .....++.+.+|+++|+++++ .+.+++++||+.||-
T Consensus 46 ~~~~FsS---ndYLGL~~~p~v~~a~~~al~~yG~gs~~Sr~~~G~~~~h~~LE~~lA~~~g---~e~all~~sG~~An~ 119 (396)
T d2bwna1 46 DITVWCG---NDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQ---KEAALVFSSAYNAND 119 (396)
T ss_dssp EEEECSC---SCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTT---CSEEEEESCHHHHHH
T ss_pred EEEEEEc---ccccCcCCCHHHHHHHHHHHHHhCCCccccccccCCchHHHHHHHHHHHHhC---CCceeeeecchHHHH
Confidence 9999999 999999999999999999999987643 122347889999999999998 478999999999999
Q ss_pred HHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccc
Q 005009 476 IALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFM 555 (719)
Q Consensus 476 ~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 555 (719)
+++... .. ..+..+|..+...|.+...++.+++....+
T Consensus 120 ~~i~~l-~~-------------------~~~~d~i~~D~~~Hasi~~g~~ls~a~~~~---------------------- 157 (396)
T d2bwna1 120 ATLSTL-RV-------------------LFPGLIIYSDSLNHASMIEGIKRNAGPKRI---------------------- 157 (396)
T ss_dssp HHHHHH-HH-------------------HSTTCEEEEETTCCHHHHHHHHHSCCCEEE----------------------
T ss_pred HHHHHH-hc-------------------ccCCCceeehhhhhhccchhhhccccCceE----------------------
Confidence 999865 11 123479999999999888877776432100
Q ss_pred cCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCcc
Q 005009 556 YNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGM 635 (719)
Q Consensus 556 ~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~ 635 (719)
+++||. +.+++.++. ..+.+-..|++|.| .++.|.
T Consensus 158 ----------------------f~Hnd~------------------~~l~~l~~~----~~~~~~~~iv~egv-ySmdGd 192 (396)
T d2bwna1 158 ----------------------FRHNDV------------------AHLRELIAA----DDPAAPKLIAFESV-YSMDGD 192 (396)
T ss_dssp ----------------------ECTTCH------------------HHHHHHHHH----SCTTSCEEEEEESB-CTTTCC
T ss_pred ----------------------eecchH------------------HHhhhHHhh----hcccCceeEEEEee-ccCccc
Confidence 114553 334555554 22344457889998 999999
Q ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCc--cccccccCCC--ccee--eehhccCCCccchheeEeCHHHHh
Q 005009 636 HMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGV--ETTADLLGCV--PDIA--CYGKLLTGGVIPLAATLATNAVFD 709 (719)
Q Consensus 636 ~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~--~~a~e~~gv~--PDIv--tlgK~LggG~~Plsavl~~~~i~~ 709 (719)
+.| +++|.+||++||+.||+||.| |||-.|+ .+..+++|+. .||+ ||||++|+. -|.|++++++.+
T Consensus 193 ~ap----l~~l~~L~~~y~~~L~vDeAH-s~Gv~G~~G~G~~~~~~~~~~~di~~gTlsKa~g~~---Gg~v~~~~~~i~ 264 (396)
T d2bwna1 193 FGP----IKEICDIAEEFGALTYIDEVH-AVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVF---GGYIAASARMVD 264 (396)
T ss_dssp BCC----HHHHHHHHHHHTCEEEEECTT-TTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSC---CEEEEECHHHHH
T ss_pred ccc----cHhHHHHhhhhcceeeeccce-eeeeeccccccchhhcCCceeeeeeeeccccccccc---ccccchhHHHHH
Confidence 999 999999999999999999999 4555554 2344677774 4666 899999851 145999999998
Q ss_pred hhcC
Q 005009 710 SFVG 713 (719)
Q Consensus 710 ~~~~ 713 (719)
.+..
T Consensus 265 ~l~~ 268 (396)
T d2bwna1 265 AVRS 268 (396)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8754
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.72 E-value=5.2e-18 Score=186.89 Aligned_cols=223 Identities=13% Similarity=-0.015 Sum_probs=147.1
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlK 479 (719)
.+||+.|..++..++|. +. +++. ..+. .+ ..++...+|++++++++| .++++|++||++||+.|+|
T Consensus 43 ~~id~~sd~~t~~~~~~-~~---a~~~-~gd~----~y--~~~~~~~~le~~~a~l~g---~~~~~~~~sGt~A~~~a~~ 108 (465)
T d1ax4a_ 43 VYIDLLTDSGTNAMSDH-QW---AAMI-TGDE----AY--AGSRNYYDLKDKAKELFN---YDYIIPAHQGRGAENILFP 108 (465)
T ss_dssp CSEECSCSSSCCCEEHH-HH---HHHH-TCCC----CS--SSCHHHHHHHHHHHHHHC---CCEEEEESSHHHHHHHHHH
T ss_pred eeeecccccchhhhhHH-HH---HHHh-hhhh----hh--ccChHHHHHHHHHHHHHC---CCEEEECCCcHHHHHHHHH
Confidence 79999999888777666 32 2221 1111 11 124556789999999998 5899999999999999999
Q ss_pred HHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcc
Q 005009 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (719)
Q Consensus 480 lA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (719)
++ +.+..+.|. . +..+| ...||+.|.++....+....... ..+. .
T Consensus 109 ~~-~~~g~~~~~------------~-~~~~i--~~~~h~~t~~~~~~~~g~~~~~~-------------~~~~------~ 153 (465)
T d1ax4a_ 109 VL-LKYKQKEGK------------A-KNPVF--ISNFHFDTTAAHVELNGCKAINI-------------VTEK------A 153 (465)
T ss_dssp HH-HHHHHHTTC------------C-SSCEE--EESSCCHHHHHHHHHTTCEEEEC-------------BCGG------G
T ss_pred HH-HHHHHhcCC------------C-CCeEE--eccchhhhhHHHHHHcCCeeecc-------------cccc------c
Confidence 99 666555432 1 22233 24678877666443321100000 0000 0
Q ss_pred eeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCC
Q 005009 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (719)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (719)
.....++... + + -| .+.++++|.+ ..++.++++++|++ ++.+|..++|
T Consensus 154 ~~~~~~~~~~----------~-~--------~d--------~~~l~~~i~~----~~~~~~~~~~~~~~-~~~~g~~~~~ 201 (465)
T d1ax4a_ 154 FDSETYDDWK----------G-D--------FD--------IKKLKENIAQ----HGADNIVAIVSTVT-CNSAGGQPVS 201 (465)
T ss_dssp GCTTSCCTTT----------T-C--------BC--------HHHHHHHHHH----HCGGGEEEEEEESS-BTTTTSBCCC
T ss_pred CCCCCCCCcc----------C-c--------cC--------HHHHHHHHHh----hccccccceeeccc-cccCceecCC
Confidence 0000000000 0 0 01 3567777765 34678999999998 9999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEecccc------CccccCccccccccCCCcc------eeeehhccCCCccchheeEeC
Q 005009 640 PLFQRILVKECQNRKIPVIFDEVFT------GFWRLGVETTADLLGCVPD------IACYGKLLTGGVIPLAATLAT 704 (719)
Q Consensus 640 ~~fl~~Lr~Lc~k~gilLI~DEVqT------GfGRtG~~~a~e~~gv~PD------IvtlgK~LggG~~Plsavl~~ 704 (719)
.+++++|+++|++||++||+||+++ +++|++.+|+.+..++.|| +++++|.-++| .|.+++++.
T Consensus 202 ~~~l~~i~~~~~~~g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~~-~~~~g~l~~ 277 (465)
T d1ax4a_ 202 MSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPL-LNIGGLVAI 277 (465)
T ss_dssp HHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTC-CSSCEEEEE
T ss_pred HHHHHHHHHHHHHcCCEEEEECcchhhhhcccccccccccccchhhhccccccccceeEeecccCcc-cccceeEee
Confidence 9999999999999999999999998 5788888888887777665 55666666666 576666554
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.58 E-value=1e-15 Score=168.68 Aligned_cols=225 Identities=13% Similarity=0.068 Sum_probs=147.5
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlK 479 (719)
.+||+.+-+++....|+ +...+.. +.-.+ ..++...+|++++++++| .+.++|++||++||+.|++
T Consensus 42 ~~idl~sd~~t~~~~~~--------~~a~~~~-gd~~Y--~~~~~~~~le~~~a~l~G---~~~~~~~~sGt~A~~~a~~ 107 (467)
T d2v1pa1 42 VFIDLLTDSGTGAVTQS--------MQAAMMR-GDEAF--SGSRSYYALAESVKNIFG---YQYTIPTHQGRGAEQIYIP 107 (467)
T ss_dssp CSEECSCCTTCSCCCHH--------HHHHTTS-CCCCS--SSCHHHHHHHHHHHHHTC---CSEEEEECSSTTTHHHHHH
T ss_pred eeeeccccccchhhHHH--------HHhhccc-cchhh--cCCchHHHHHHHHHHHHC---CCEEEECCCCHHHHHHHHH
Confidence 68898887776654443 1111111 11111 136677899999999998 5789999999999999999
Q ss_pred HHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcc
Q 005009 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (719)
Q Consensus 480 lA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (719)
++ ..+...... ..+..+++..+.||+.|.+++.++|.....- ..... ..++
T Consensus 108 ~~-~~~g~~~~~------------~~~~~~i~~~~~~~~~~~~~~~~~G~~~~~~------~~~~~--~~~~-------- 158 (467)
T d2v1pa1 108 VL-IKKREQEKG------------LDRSKMVAFSNYFFDTTQGHSQINGCTVRNV------YIKEA--FDTG-------- 158 (467)
T ss_dssp HH-HHHHHHHHC------------CCTTTCEEEESSCCHHHHHHHHHTTCEEEEC------BCTTT--TCTT--------
T ss_pred HH-hhccceEec------------CCCCcEEEEecccccccHHHHHHcCCeeeec------ccccc--cccc--------
Confidence 99 444332211 4456788999999999988888887431100 00000 0000
Q ss_pred eeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCC
Q 005009 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (719)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (719)
.+..+ ....| .+.+++.+.+ .++..++++++|++ ++++|..+++
T Consensus 159 ----~~~~~---------~~~~d------------------~~~l~~~i~~----~~~~~~~~i~~e~~-~~~~gg~~~~ 202 (467)
T d2v1pa1 159 ----VRYDF---------KGNFD------------------LEGLERGIEE----VGPNNVPYIVATIT-SNSAGGQPVS 202 (467)
T ss_dssp ----SCCTT---------TTCBC------------------HHHHHHHHHH----HCGGGCCCEEEESS-BCGGGCBCCC
T ss_pred ----ccccc---------ccCCC------------------HHHHHHHHhh----cCccccceeeecce-eeccccccCC
Confidence 00000 00111 3567777765 35678999999998 9999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEeccccC---ccccCccccccccCC---------CcceeeehhccCCCccchheeEeC
Q 005009 640 PLFQRILVKECQNRKIPVIFDEVFTG---FWRLGVETTADLLGC---------VPDIACYGKLLTGGVIPLAATLAT 704 (719)
Q Consensus 640 ~~fl~~Lr~Lc~k~gilLI~DEVqTG---fGRtG~~~a~e~~gv---------~PDIvtlgK~LggG~~Plsavl~~ 704 (719)
.+++++|+++|++||++||+||+++. .++++..+++...++ ..|++++++.-++| .|.++++++
T Consensus 203 ~~~l~~i~~ia~~~g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~-~~~gg~i~~ 278 (467)
T d2v1pa1 203 LANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAM-VPMGGLLCM 278 (467)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTC-CSSCEEEEE
T ss_pred HHHHHHHHHHHHHcCCEEEEechhhhccccccccccccccCCcccccchhhcccCCEEEecCCCCCC-CCCceeEEe
Confidence 99999999999999999999999962 233444444444332 46788777665555 466766664
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.42 E-value=5.4e-13 Score=136.16 Aligned_cols=215 Identities=8% Similarity=-0.014 Sum_probs=133.2
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 479 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlK 479 (719)
.+|||.| .|.++. ||+|++|++++...... .....+...++.++|+++++.+ ..++|++||+|||+.|++
T Consensus 3 ~~~~f~s----~n~~g~-~P~v~~A~~~a~~~~~~---~~~~~~~~~~l~~~la~~~g~~--~~v~f~~sGt~An~~a~~ 72 (345)
T d1v72a1 3 PALGFSS----DNIAGA-SPEVAQALVKHSSGQAG---PYGTDELTAQVKRKFCEIFERD--VEVFLVPTGTAANALCLS 72 (345)
T ss_dssp CCCBCSC----GGGCCC-CHHHHHHHHHTTSSCCC---STTCSHHHHHHHHHHHHHHTSC--CEEEEESCHHHHHHHHHH
T ss_pred CCcCcCC----CCCCCC-CHHHHHHHHHHhccCcc---ccCCCHHHHHHHHHHHHHHCCC--cEEEECCchHHHHHHHHH
Confidence 5789886 456778 99999999987543221 1135678889999999999853 468999999999999999
Q ss_pred HHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcc
Q 005009 480 MAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSK 559 (719)
Q Consensus 480 lA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 559 (719)
.+ +... ..++.. ...|........+..... .
T Consensus 73 ~~-~~~~--------------------~~~~~~-~~~~~~~~~~~~~~~~~~---------------------------~ 103 (345)
T d1v72a1 73 AM-TPPW--------------------GNIYCH-PASHINNDECGAPEFFSN---------------------------G 103 (345)
T ss_dssp TS-CCTT--------------------EEEEEC-TTSHHHHSSTTHHHHHTT---------------------------S
T ss_pred HH-HhcC--------------------Cccccc-cccceeeechhhHHHhcC---------------------------c
Confidence 88 2211 122222 222222111111110000 0
Q ss_pred eeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCC
Q 005009 560 WILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVD 639 (719)
Q Consensus 560 ~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp 639 (719)
...+.+... + ...+ .+.+++.+.... .......+++++++ +...+....+
T Consensus 104 ~~~~~~~~~-------------~------~~~~--------~~~l~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~ 153 (345)
T d1v72a1 104 AKLMTVDGP-------------A------AKLD--------IVRLRERTREKV--GDVHTTQPACVSIT-QATEVGSIYT 153 (345)
T ss_dssp CEEEECCCG-------------G------GCCC--------HHHHHHHTTSST--TCTTSCEEEEEEEE-SSCTTSCCCC
T ss_pred ccccccccc-------------c------cccc--------HHHhhhhhcccc--cccccccceeeeee-cccccccccc
Confidence 000000000 0 0001 244555554311 12234567777776 7777777788
Q ss_pred HHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCC--cceeeehhccCCCccchheeEeC
Q 005009 640 PLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCV--PDIACYGKLLTGGVIPLAATLAT 704 (719)
Q Consensus 640 ~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~--PDIvtlgK~LggG~~Plsavl~~ 704 (719)
.+.++++.++|++||+++++||+|+++++++.++........ ++.++++|..++++ ..+.....
T Consensus 154 ~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 219 (345)
T d1v72a1 154 LDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVL-AAEAIVLF 219 (345)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTCS-SCEEEEES
T ss_pred chhhhhHHHHHHhcCceeeecccccceeccccccCHHHhhccccccccccCccccccc-cccccccc
Confidence 999999999999999999999999998888887776665554 45567777777663 44444433
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.32 E-value=4.5e-12 Score=129.53 Aligned_cols=217 Identities=11% Similarity=-0.015 Sum_probs=135.5
Q ss_pred eeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHH
Q 005009 402 FDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA 481 (719)
Q Consensus 402 LD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA 481 (719)
+||.+=..|.+ ||++++|+.++..- ... -+..+...+|+++|++++| .+.++|++||++||+.||+.+
T Consensus 2 ~~~~~~~~t~p-----~p~v~~A~~~a~~g--~~~--yg~~p~~~~le~~lA~~~G---~~~~~~~~sGt~A~~~al~a~ 69 (343)
T d1m6sa_ 2 IDLRSDTVTKP-----TEEMRKAMAQAEVG--DDV--YGEDPTINELERLAAETFG---KEAALFVPSGTMGNQVSIMAH 69 (343)
T ss_dssp EECSCGGGCCC-----CHHHHHHHHTCCCC--CGG--GTCCHHHHHHHHHHHHHTT---CSEEEEESCHHHHHHHHHHHH
T ss_pred cccccccCCCC-----CHHHHHHHHhhhcC--Ccc--cCCCHHHHHHHHHHHHHHC---CCeEEEeCCHHHHHHHHHHHH
Confidence 56655443433 79999999875421 111 1235778899999999998 478999999999999999987
Q ss_pred HHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCccee
Q 005009 482 FRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWI 561 (719)
Q Consensus 482 ~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 561 (719)
. +.| ..++.....++. +.......... . ...
T Consensus 70 ~-----~~g----------------~~~~~~~~~~~~-~~~~~~~~~~~---~------------------------~~~ 100 (343)
T d1m6sa_ 70 T-----QRG----------------DEVILEADSHIF-WYEVGAMAVLS---G------------------------VMP 100 (343)
T ss_dssp C-----CTT----------------CEEEEETTCHHH-HSSTTHHHHHT---C------------------------CEE
T ss_pred h-----ccC----------------Cceeccccccce-eeecccccccc---c------------------------cee
Confidence 2 111 234444443333 22221111100 0 000
Q ss_pred ecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHH
Q 005009 562 LSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPL 641 (719)
Q Consensus 562 ~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~ 641 (719)
.+.|.... ..+ .+.++..+.... ....++..+++++. ....|...+|.+
T Consensus 101 ~~~~~~~~----------~~~------------------~~~~~~~i~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~ 149 (343)
T d1m6sa_ 101 HPVPGKNG----------AMD------------------PDDVRKAIRPRN--IHFPRTSLIAIENT-HNRSGGRVVPLE 149 (343)
T ss_dssp EEECEETT----------EEC------------------HHHHHHHSCCSC--TTSCCEEEEEEESS-BTTTTSBCCCHH
T ss_pred eccccccC----------ccC------------------HHHHHHhhhhhh--cccccccccccccc-cccCCceecCHH
Confidence 01110000 001 133444554321 23346777778876 677777788999
Q ss_pred HHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCCccchheeEeCHHHHhh
Q 005009 642 FQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNAVFDS 710 (719)
Q Consensus 642 fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~i~~~ 710 (719)
++++|+++|++||+++|+||+++++..++..+.........+..+++|..+.|....++.+...+....
T Consensus 150 ~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 218 (343)
T d1m6sa_ 150 NIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRDFIER 218 (343)
T ss_dssp HHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSSCEEEEECHHHHHH
T ss_pred HHHHHHHHHHhcCeEEEeccccccccccccccchhhhccccccccccccccccccccccccccHHHHhh
Confidence 999999999999999999999998766666665554445566666776666555678888888876644
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.05 E-value=6.2e-10 Score=116.17 Aligned_cols=205 Identities=11% Similarity=0.074 Sum_probs=122.3
Q ss_pred CCCCCHHHHHHHHHhhhhcccccC-----CCC-CC-hHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhh
Q 005009 414 DATLQIELARDMGYTAARFGHVMF-----PEN-VY-EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 486 (719)
Q Consensus 414 GH~~hP~V~~Av~~q~~~~~~~~~-----~~~-~~-~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~ 486 (719)
|.- .|+..+|+.+..+.+....+ ... .. +.+..+.++|+++++ .+.++++++|++|+..|+...
T Consensus 12 ~~l-~~~a~~a~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~A~~~g---~e~~~~t~g~t~a~~~~~~al----- 82 (364)
T d2e7ja1 12 GKL-TEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLG---CDVARVTNGAREAKFAVMHSL----- 82 (364)
T ss_dssp CCC-CHHHHHHHHHC--------------------CCHHHHHHTHHHHHTT---SSEEEEESSHHHHHHHHHHHH-----
T ss_pred CcC-CHHHHHHHHHHhcCCchhccccccccccccChHHHHHHHHHHHHHhC---cCEEEEECcHHHHHHHHHHHH-----
Confidence 444 67888887765443321100 000 01 246678899999998 478999999999999999765
Q ss_pred ccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcc
Q 005009 487 FDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPE 566 (719)
Q Consensus 487 ~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~ 566 (719)
.++| ..||.- ...|.+...++...|... ..+|..+
T Consensus 83 ~~~g----------------d~Vi~~-~~~h~s~~~~~~~~g~~v----------------------------~~v~~~~ 117 (364)
T d2e7ja1 83 AKKD----------------AWVVMD-ENCHYSSYVAAERAGLNI----------------------------ALVPKTD 117 (364)
T ss_dssp CCTT----------------CEEEEE-TTCCHHHHHHHHHTTCEE----------------------------EEECCCC
T ss_pred hCCC----------------cEEEee-cccccccchHHHhccceE----------------------------EEeeecc
Confidence 1222 245554 445544443333332110 0111110
Q ss_pred hhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHH
Q 005009 567 WLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRIL 646 (719)
Q Consensus 567 ~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~L 646 (719)
. ++ + .-+ .+.+++.+++. ....++..|+++-+ .+..|.+.+ +++|
T Consensus 118 ~-------------~~----~--~i~--------~~~l~~~i~~~---~k~~~~~lv~i~~~-~n~tG~~~~----l~~I 162 (364)
T d2e7ja1 118 Y-------------PD----Y--AIT--------PENFAQTIEET---KKRGEVVLALITYP-DGNYGNLPD----VKKI 162 (364)
T ss_dssp T-------------TT----C--CCC--------HHHHHHHHHHH---TTTSCEEEEEEESS-CTTTCCCCC----HHHH
T ss_pred c-------------cc----c--ccC--------HHHHHhhhhhh---cccCCceEEEeecC-CCCCceeec----chhh
Confidence 0 00 0 001 24566666542 23456788888876 788898887 9999
Q ss_pred HHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeeh--hccCCCccchheeEeCHHHHhhhcC
Q 005009 647 VKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 647 r~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~LggG~~Plsavl~~~~i~~~~~~ 713 (719)
.++|++||+++|+||+|+ +|..+. ....+ ..|+++++ |.++++ -.+|.+++++++.+.+..
T Consensus 163 ~~ia~~~~i~livD~a~~-~g~~~~--~~~~~--g~D~~~~S~~K~~~~~-g~~g~l~~~~~~~~~~~~ 225 (364)
T d2e7ja1 163 AKVCSEYDVPLLVNGAYA-IGRMPV--SLKEI--GADFIVGSGHKSMAAS-GPIGVMGMKEEWAEIVLR 225 (364)
T ss_dssp HHHHHTTTCCEEEECTTT-BTTBCC--CHHHH--TCSEEEEEHHHHSSCC-SSCEEEEECTTTTTTTTC
T ss_pred eeccccccchhhccccch-hhhhhh--ccccc--ccceeeeccccccCCC-CCEEEEEECHHHHHHHHh
Confidence 999999999999999994 554432 11222 36888766 999864 256888998888776543
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.72 E-value=8.7e-08 Score=93.69 Aligned_cols=86 Identities=16% Similarity=0.247 Sum_probs=63.1
Q ss_pred cCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCC-EEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccCCC----CCH
Q 005009 220 MEILCIVETAGGVASPGPSGSLQCDLYRPFRLP-GILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDHGL----VNE 294 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~~~dla~~l~~p-vilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~~~----~~~ 294 (719)
.+|++||++.+++.. ..... ...+. ||+|+.....++.++...++.+++.++++.|+|+|++.. ...
T Consensus 111 ~~d~IiiD~~~~~~~------~~~~~--l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~giv~N~~~~~~~~~~~ 182 (237)
T d1g3qa_ 111 KFDFILIDCPAGLQL------DAMSA--MLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRSDRDIPP 182 (237)
T ss_dssp GCSEEEEECCSSSSH------HHHHH--HTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSCTTCCCH
T ss_pred cCCEEEEcccccccc------cchhh--hhhhhcccccccccceecchhhHHHHHHhhhhhhhhhhhhcccccccchhhh
Confidence 399999999765321 11222 22233 678888888899999999999999999999999999832 234
Q ss_pred HHHHHhhcCCCcEEe-cCCCCC
Q 005009 295 VPLMSYLRNRVPVLV-LPPLPQ 315 (719)
Q Consensus 295 ~~l~~~~~~~~pvlg-lP~~~~ 315 (719)
...++++ ++|+++ ||+.+.
T Consensus 183 ~~~~~~~--~~~~~~~IP~d~~ 202 (237)
T d1g3qa_ 183 EAAEDVM--EVPLLAVIPEDPA 202 (237)
T ss_dssp HHHHHHH--CSCEEEEEECCHH
T ss_pred HHHHhhc--CceEEEEeCCCHH
Confidence 4566676 899999 997654
|
| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.69 E-value=1.5e-07 Score=91.95 Aligned_cols=101 Identities=14% Similarity=0.187 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHHHhccccccccccccCcCcEEEEeCCCCCCCCCCCCchhHHHHhhcCCCEEEEEcCCCChHHHHHHHHH
Q 005009 193 GDSKVIETLGKCLRDGLESESESERGKMEILCIVETAGGVASPGPSGSLQCDLYRPFRLPGILVGDGRLGGISGTISAYE 272 (719)
Q Consensus 193 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vivEGagG~~~p~~~~~~~~dla~~l~~pvilV~~~~~g~i~~~~~~~~ 272 (719)
..+.+.+.+..+.+. +|++||.+..++.. ......... --+++|+....-++.++...++
T Consensus 95 ~~~~l~~~l~~l~~~-------------~D~viiD~~~~~~~------~~~~~l~~a-d~v~~v~~~~~~~~~~~~~~~~ 154 (232)
T d1hyqa_ 95 NPEKLEDVLTQIMES-------------TDILLLDAPAGLER------SAVIAIAAA-QELLLVVNPEISSITDGLKTKI 154 (232)
T ss_dssp CHHHHHHHHHHHHHT-------------CSEEEEECCSSSSH------HHHHHHHHS-SEEEEEECSSHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHhhc-------------cceeeecccccccc------hhHHHhhhh-heeeeeccccccchhhhhhhhh
Confidence 456677777666554 99999999765421 222222222 3577888888778888888888
Q ss_pred HHHhCCCcEEEEEEccCCCCC----HHHHHHhhcCCCcEEe-cCCCCC
Q 005009 273 SLKLRGYDVVAVVFEDHGLVN----EVPLMSYLRNRVPVLV-LPPLPQ 315 (719)
Q Consensus 273 ~l~~~~~~v~gvi~N~~~~~~----~~~l~~~~~~~~pvlg-lP~~~~ 315 (719)
.+++.+.++.|+|+|++.... ...+++++ ++|+++ ||+.+.
T Consensus 155 ~~~~~~~~~~~iv~N~~~~~~~~~~~~~i~~~~--~~~~~~~IP~d~~ 200 (232)
T d1hyqa_ 155 VAERLGTKVLGVVVNRITTLGIEMAKNEIEAIL--EAKVIGLIPEDPE 200 (232)
T ss_dssp HHHHHTCEEEEEEEEEECTTTHHHHHHHHHHHT--TSCEEEEEECCHH
T ss_pred hhhhcccccccccccccccccccchhhhHHhhc--CCeEEEECCCCHH
Confidence 888889999999999984332 34456666 899999 998754
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=98.51 E-value=1.8e-07 Score=101.99 Aligned_cols=58 Identities=12% Similarity=0.091 Sum_probs=49.5
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEecccc
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT 664 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqT 664 (719)
+.|++.|.+ ..++.++.+++|-. ...+|-.+.+.+++++++++|++||++||+|+++.
T Consensus 161 ~~le~~I~~----~~~~~~~~i~~e~~-~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~ 218 (456)
T d1c7ga_ 161 NKLATLIKE----KGAENIAYICLAVT-VNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRC 218 (456)
T ss_dssp HHHHHHHHH----HCGGGEEEEEEESS-BTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTH
T ss_pred HHHHHHhhh----cCCccceeEEeeec-ccccccceecHHHHHHHHHHHHHcCCEEEEEcchh
Confidence 567778875 34578999999976 67777778899999999999999999999999986
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=98.43 E-value=1.3e-06 Score=86.33 Aligned_cols=66 Identities=12% Similarity=0.020 Sum_probs=50.5
Q ss_pred cCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHH
Q 005009 411 QGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA 481 (719)
Q Consensus 411 ~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA 481 (719)
.|..=+ ||+|++|+.++.....+.. ...+...++.++++++++.+ .+.|+|+++|+|||..|++.+
T Consensus 7 d~~~g~-~P~v~eAl~~~~~~~~~~y---~~~~~~~~lr~~ia~~~g~~-~~~v~~tsggtean~~a~~~~ 72 (340)
T d1svva_ 7 DYSVGM-HPKILDLMARDNMTQHAGY---GQDSHCAKAARLIGELLERP-DADVHFISGGTQTNLIACSLA 72 (340)
T ss_dssp SCSSCC-CHHHHHHHHHHTTCCCCST---TCSHHHHHHHHHHHHHHTCT-TSEEEEESCHHHHHHHHHHHH
T ss_pred CCCCCC-CHHHHHHHHHHhhcCCCCC---CCCHHHHHHHHHHHHHhCCC-cceEEEcCCHHHHHHHHHHHH
Confidence 344336 9999999998776543321 23566678999999998865 368999999999999999977
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=98.27 E-value=1.5e-05 Score=83.60 Aligned_cols=218 Identities=12% Similarity=0.080 Sum_probs=130.5
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhccccc-CCCCCChHHHHHHHHHHhccCCC-CCCeEEEeCChHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM-FPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIA 477 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~-~~~~~~~~~~~Lae~L~~~~~~~-~~~rv~f~~SGsEA~E~A 477 (719)
.+||+..|-- .+-..|+|.+|+++.++...+.. ......+....+++.+.+..+.+ .-+.+++++++++|...+
T Consensus 32 ~vi~l~~g~p----~~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~lR~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~ 107 (382)
T d1b5pa_ 32 DLVALTAGEP----DFDTPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNL 107 (382)
T ss_dssp CCEECCCSSC----SSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHH
T ss_pred CeEECCCCCC----CCCCCHHHHHHHHHHHhcCCcCCCCCCCCHHHHHHHHhhhhhhcccccccccceecCCHHHHHHHH
Confidence 7888766532 23226899999998887532211 11222344566777776644322 135799999999999988
Q ss_pred HHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccC
Q 005009 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (719)
Q Consensus 478 lKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (719)
++... ..| ..|+...-+|.+-.. .....|..
T Consensus 108 ~~~l~-----~~g----------------d~vl~~~P~y~~~~~-~~~~~g~~--------------------------- 138 (382)
T d1b5pa_ 108 FQAIL-----DPG----------------DEVIVLSPYWVSYPE-MVRFAGGV--------------------------- 138 (382)
T ss_dssp HHHHC-----CTT----------------CEEEEEESCCTHHHH-HHHHTTCE---------------------------
T ss_pred HHHhC-----CCC----------------CEEEECCCCcHHHHH-HHHHhcCe---------------------------
Confidence 88661 111 368888888887432 22222210
Q ss_pred cceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCcccc
Q 005009 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (719)
Q Consensus 558 ~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~ 637 (719)
.+.+|-.- -++ + ..| .+.+++.+. ....+.++.-| +.=.|.+
T Consensus 139 ---~~~v~~~~-----------~~~----~--~~d--------~~~l~~~~~-------~~~~~i~~~~P--~NPTG~~- 180 (382)
T d1b5pa_ 139 ---VVEVETLP-----------EEG----F--VPD--------PERVRRAIT-------PRTKALVVNSP--NNPTGAV- 180 (382)
T ss_dssp ---EEEEECCG-----------GGT----T--CCC--------HHHHHTTCC-------TTEEEEEEESS--CTTTCCC-
T ss_pred ---EEEEeccc-----------ccc----c--CCC--------HHHHHHhCC-------CCCeEEEECCC--CCCcchh-
Confidence 11111000 000 0 011 234443332 22334555567 4445554
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcc-ee---eehhccC-CCccchheeEeCHHHHhhh
Q 005009 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPD-IA---CYGKLLT-GGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 638 pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PD-Iv---tlgK~Lg-gG~~Plsavl~~~~i~~~~ 711 (719)
.+.+-+++|.++|++||+++|.||++..|-.-|+.+.... ..+| ++ +++|.++ .| +-+|.+++.+++++.+
T Consensus 181 ~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~--~~~~~~i~~~s~SK~~~~~G-lR~G~~~~~~~~i~~~ 256 (382)
T d1b5pa_ 181 YPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGR--VAPEHTLTVNGAAKAFAMTG-WRIGYACGPKEVIKAM 256 (382)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGG--TCTTTEEEEEESTTTTTCGG-GCCEEEECCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCHHH--cCCCCEEEEecchhhccCcH-hheEEEEECHHHHHHH
Confidence 4789999999999999999999999998755566443322 2233 22 6899998 68 6889999999988765
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=98.25 E-value=2.2e-06 Score=89.68 Aligned_cols=85 Identities=11% Similarity=0.092 Sum_probs=63.2
Q ss_pred CCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhc----CCcEEEeccccCccccCccccccccCCCcceeeeh--hc
Q 005009 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR----KIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KL 690 (719)
Q Consensus 617 ~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~----gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~ 690 (719)
..++.++++..+ +...|.+.+ +++|.++|++| |+++++|.+|+ +|.. .+-. -...+|+++++ |.
T Consensus 143 ~~~t~~v~i~~~-~n~tG~~~~----~~~I~~l~~~~~~~~~~~~~vD~~~~-~g~~--~~~~--~~~~~D~~~~s~~K~ 212 (381)
T d1elua_ 143 GPKTRLVILSHL-LWNTGQVLP----LAEIMAVCRRHQGNYPVRVLVDGAQS-AGSL--PLDF--SRLEVDYYAFTGHKW 212 (381)
T ss_dssp CTTEEEEEEESB-CTTTCCBCC----HHHHHHHHHHCCSSSCCEEEEECTTT-BTTB--CCCT--TTSCCSEEEEESSST
T ss_pred cccccccccccc-cccccccch----hhHHHHHHhhcccccccccccccccc-cccc--cccc--ccccccccccccccc
Confidence 357888889887 888899988 89999999985 69999999995 4321 1222 23468887654 98
Q ss_pred cCCCccchheeEeCHHHHhhhc
Q 005009 691 LTGGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 691 LggG~~Plsavl~~~~i~~~~~ 712 (719)
+++. ..+|++.++++..+.+.
T Consensus 213 ~~~p-~G~g~l~~~~~~~~~~~ 233 (381)
T d1elua_ 213 FAGP-AGVGGLYIHGDCLGEIN 233 (381)
T ss_dssp TCCC-TTCEEEEECTTTGGGCC
T ss_pred cccc-chhhHHHhhHHHHHhcC
Confidence 8875 45678888888877653
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=98.18 E-value=3e-05 Score=81.70 Aligned_cols=220 Identities=12% Similarity=0.043 Sum_probs=130.7
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhccccc-CCCCCChHHHHHHHHHHhccCCC-CCCeEEEeCChHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM-FPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIA 477 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~-~~~~~~~~~~~Lae~L~~~~~~~-~~~rv~f~~SGsEA~E~A 477 (719)
.+|||..|. -.+..+|.|++|+++.++...+.. .....-+....+++.+.+..+.. .-+.+++++++++|...+
T Consensus 31 ~vi~l~~G~----p~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~~~i~it~G~~~al~~~ 106 (388)
T d1j32a_ 31 DVCSFSAGE----PDFNTPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNL 106 (388)
T ss_dssp CCEECCCSS----CSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHH
T ss_pred CeEECCCCC----CCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcccCCCCceEEEcCCHHHHHHHH
Confidence 789987753 234436999999999887532211 11122234556677776543321 135799999999999998
Q ss_pred HHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccC
Q 005009 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (719)
Q Consensus 478 lKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (719)
++.. . ..| ..|+...-+|.+-... ....+.
T Consensus 107 ~~~~----~-~~g----------------d~Vlv~~P~y~~~~~~-~~~~~~---------------------------- 136 (388)
T d1j32a_ 107 MLAM----I-EPG----------------DEVIIPAPFWVSYPEM-VKLAEG---------------------------- 136 (388)
T ss_dssp HHHH----C-CTT----------------CEEEEESSCCTHHHHH-HHHTTC----------------------------
T ss_pred HHHH----h-CCC----------------CEEEEcCCCcHHHHHH-HHHhcC----------------------------
Confidence 8765 1 112 3677777777653221 111111
Q ss_pred cceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCcccc
Q 005009 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (719)
Q Consensus 558 ~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~ 637 (719)
..+++|... ++-| .-| .+.+++.+. +...+.++.-| +.=.|.+
T Consensus 137 --~~v~~~~~~---------------~~~~--~~d--------~~~l~~~~~-------~~~~~~~~~~P--~NPTG~~- 179 (388)
T d1j32a_ 137 --TPVILPTTV---------------ETQF--KVS--------PEQIRQAIT-------PKTKLLVFNTP--SNPTGMV- 179 (388)
T ss_dssp --EEEEECCCG---------------GGTT--CCC--------HHHHHHHCC-------TTEEEEEEESS--CTTTCCC-
T ss_pred --eEEEEeccc---------------cccc--CCC--------HHHHHHhCC-------CCCeEEEECCC--CCCCCcc-
Confidence 011111000 0000 001 245665553 23445667778 4555665
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCc-----cee--eehhccC-CCccchheeEeCHHHHh
Q 005009 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVP-----DIA--CYGKLLT-GGVIPLAATLATNAVFD 709 (719)
Q Consensus 638 pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~P-----DIv--tlgK~Lg-gG~~Plsavl~~~~i~~ 709 (719)
.+.+-+++|.++|++||+++|.||+...+...+..+..- ....| .|+ .++|.++ .| +-+|.+++++++.+
T Consensus 180 ~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~-~~~~~~~~~~~i~~~S~SK~~~~~G-lRvG~~~~~~~~~~ 257 (388)
T d1j32a_ 180 YTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSI-GAASPEAYERSVVCSGFAKTYAMTG-WRVGFLAGPVPLVK 257 (388)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCG-GGSCHHHHHTEEEEEESTTTTTCTT-TCCEEEECCHHHHH
T ss_pred cchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCH-HHhCcccccceeEecCChhhhhcch-hHeEEEEECHHHHH
Confidence 478999999999999999999999997664444322111 11222 222 6899998 68 68899999999987
Q ss_pred hhc
Q 005009 710 SFV 712 (719)
Q Consensus 710 ~~~ 712 (719)
.+.
T Consensus 258 ~~~ 260 (388)
T d1j32a_ 258 AAT 260 (388)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=98.16 E-value=1.1e-05 Score=83.89 Aligned_cols=202 Identities=13% Similarity=0.089 Sum_probs=117.3
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccC
Q 005009 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~ 497 (719)
+|.+++|+++.+++......... ..+|-+.|++..+-. .++++++++|+||+..+++... ..
T Consensus 40 p~~i~~al~~~l~~~~~Y~~~~G----~~elr~aiA~~~~~~-~~~Iiit~G~~~al~~~~~~l~-----~~-------- 101 (368)
T d1v2da_ 40 PPFLLEAVRRALGRQDQYAPPAG----LPALREALAEEFAVE-PESVVVTSGATEALYVLLQSLV-----GP-------- 101 (368)
T ss_dssp CHHHHHHHHHHTTTSCSCCCTTC----CHHHHHHHHHHHTSC-GGGEEEESSHHHHHHHHHHHHC-----CT--------
T ss_pred CHHHHHHHHHHhhcccCCCCCcC----CHHHHHHHHhhcccC-CcceeeccchHHHHHHHhhccc-----cc--------
Confidence 78999999998876321111111 235556666655533 4689999999999999987661 11
Q ss_pred CCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhccccccc
Q 005009 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKD 577 (719)
Q Consensus 498 ~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~ 577 (719)
...|+...-+|+......... +.. ...++.+...
T Consensus 102 --------~d~v~~~~p~~~~~~~~~~~~-g~~----------------------------~~~~~~~~~~--------- 135 (368)
T d1v2da_ 102 --------GDEVVVLEPFFDVYLPDAFLA-GAK----------------------------ARLVRLDLTP--------- 135 (368)
T ss_dssp --------TCEEEEEESCCTTHHHHHHHT-TCE----------------------------EEEEECEEET---------
T ss_pred --------cccccccCCcchhhhhHHHhc-CCc----------------------------cceecccccc---------
Confidence 235666666666533222111 100 0111111000
Q ss_pred ccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcE
Q 005009 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (719)
Q Consensus 578 ~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilL 657 (719)
+. ..-| .+.+++.+. +.....++.-| +.-.|.+. +.+-+++|.++|++||+++
T Consensus 136 ----~~-----~~~d--------~~~l~~~~~-------~~~~~i~~~~p--~NPtG~~~-~~~~l~~l~~~a~~~~i~i 188 (368)
T d1v2da_ 136 ----EG-----FRLD--------LSALEKALT-------PRTRALLLNTP--MNPTGLVF-GERELEAIARLARAHDLFL 188 (368)
T ss_dssp ----TE-----EECC--------HHHHHTTCC-------TTEEEEEEESS--CTTTCCCC-CHHHHHHHHHHHHHTTCEE
T ss_pred ----cc-----ccCC--------HHHHHHhhc-------cCceEEEEcCC--CCcccccC-CHHHHHHHHHHHHHcCCee
Confidence 00 0001 234444432 33445566777 46667654 7888999999999999999
Q ss_pred EEeccccCccccCccccccccCCCc--ceeeehhccCC-CccchheeEeCHHHHhhh
Q 005009 658 IFDEVFTGFWRLGVETTADLLGCVP--DIACYGKLLTG-GVIPLAATLATNAVFDSF 711 (719)
Q Consensus 658 I~DEVqTGfGRtG~~~a~e~~gv~P--DIvtlgK~Lgg-G~~Plsavl~~~~i~~~~ 711 (719)
|.||++..+.............-.. -+.+++|..+. | +.+|.+++.+++.+.+
T Consensus 189 i~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~~~~G-~R~g~~~~~~~~~~~~ 244 (368)
T d1v2da_ 189 ISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATG-YRVGWIVGPKEFMPRL 244 (368)
T ss_dssp EEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGG-GCCEEEECCTTTHHHH
T ss_pred eechhhhhhcccccccccccccccccceeecccccccccc-cccccccccccccchh
Confidence 9999996543333322222221122 24478887765 5 6899999999887655
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=98.15 E-value=1.4e-05 Score=84.26 Aligned_cols=88 Identities=15% Similarity=0.168 Sum_probs=62.3
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccc----cccCCCcceeeehhccCCCcc
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA----DLLGCVPDIACYGKLLTGGVI 696 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~----e~~gv~PDIvtlgK~LggG~~ 696 (719)
.-++..| +.-.|... +.+-+++|.++|++|++++|.||+...|...|..... +.++..--+-+++|.++.| +
T Consensus 174 ~~~~~~p--~NPtG~~~-s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G-~ 249 (403)
T d1wsta1 174 VYTVSTF--QNPAGVTM-SVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYGRVIYLGTFSKILAPG-F 249 (403)
T ss_dssp EEECCSS--CTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGCSSSCEEEEEESTTTTCGG-G
T ss_pred ccccccc--CCCCCccC-CHHHHHHHHHHHHhcCceeccccchhheecCCCCCCcccccCCCCcEEEEccccceecCc-c
Confidence 3333444 45556654 6788999999999999999999999877555553211 1222222233789999888 7
Q ss_pred chheeEeCHHHHhhhc
Q 005009 697 PLAATLATNAVFDSFV 712 (719)
Q Consensus 697 Plsavl~~~~i~~~~~ 712 (719)
.+|.+++++++++.+.
T Consensus 250 RiG~~i~~~~~i~~~~ 265 (403)
T d1wsta1 250 RIGWVAAHPHLIRKME 265 (403)
T ss_dssp CCEEEEECHHHHHHHH
T ss_pred cccccccchHHHHHHH
Confidence 9999999999887653
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.14 E-value=3.7e-05 Score=80.34 Aligned_cols=220 Identities=12% Similarity=0.045 Sum_probs=128.9
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccc-cCCCCCChHHHHHHHHHHhccCC--CCCCeEEEeCChHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHV-MFPENVYEPALECAELLLQGVGK--GWASRAYFSDNGSTAIEI 476 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~-~~~~~~~~~~~~Lae~L~~~~~~--~~~~rv~f~~SGsEA~E~ 476 (719)
.+||+..|.- ++..++.|.+++++.++..... .......+....+|+.+.+..+. ..-+.+++++++++|...
T Consensus 26 dvi~l~~g~p----~~~~p~~v~~~~~~a~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~~t~G~~~~l~~ 101 (388)
T d1gdea_ 26 DVISLGIGEP----DFDTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLM 101 (388)
T ss_dssp TCEECCCCSC----CSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHH
T ss_pred CeEECCCCCC----CCCCCHHHHHHHHHHHhcCccCCCCCcCCHHHHHHHHHHHHhhccccCCChheeeeccCcchHHHH
Confidence 5677765432 3333789999999888762211 11112334556667777653221 113569999999999988
Q ss_pred HHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCccccc
Q 005009 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (719)
Q Consensus 477 AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (719)
++.... .. ...|+...-+|.+-...+.. .|.
T Consensus 102 ~~~~l~-----~~----------------gd~vlv~~P~y~~~~~~~~~-~g~--------------------------- 132 (388)
T d1gdea_ 102 GLSAFL-----KD----------------GEEVLIPTPAFVSYAPAVIL-AGG--------------------------- 132 (388)
T ss_dssp HHTTTC-----CT----------------TCEEEEEESCCTTHHHHHHH-HTC---------------------------
T ss_pred HHHHhc-----CC----------------CCEEEECCCCcHHHHHHHHH-cCC---------------------------
Confidence 877551 11 23688888877764333222 211
Q ss_pred CcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccc
Q 005009 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (719)
Q Consensus 557 ~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~ 636 (719)
..+.+|- . .++.| .-| .+.+++.+. ....+.++.-| +.-.|..
T Consensus 133 ---~~~~~~~--------------~-~~~~~--~~d--------~~~l~~~~~-------~~~~~i~~~~P--~NPtG~~ 175 (388)
T d1gdea_ 133 ---KPVEVPT--------------Y-EEDEF--RLN--------VDELKKYVT-------DKTRALIINSP--CNPTGAV 175 (388)
T ss_dssp ---EEEEEEC--------------C-GGGTT--CCC--------HHHHHHHCC-------TTEEEEEEESS--CTTTCCC
T ss_pred ---EEEEeec--------------c-cccCC--CCC--------HHHHHHhCc-------cCCeEEEECCC--cCCCCCc
Confidence 0111110 0 00000 011 245666553 22345566666 3445655
Q ss_pred cCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc-cccccCCCcc--ee--eehhccC-CCccchheeEeCHHHHhh
Q 005009 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-TADLLGCVPD--IA--CYGKLLT-GGVIPLAATLATNAVFDS 710 (719)
Q Consensus 637 ~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~-a~e~~gv~PD--Iv--tlgK~Lg-gG~~Plsavl~~~~i~~~ 710 (719)
.+.+-+++|.++|++||+++|.||++..|...+.-+ ....+.-.+| |+ +++|.+| .| +-+|.+++.+++.+.
T Consensus 176 -~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-lR~G~ii~~~~~~~~ 253 (388)
T d1gdea_ 176 -LTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTG-WRLGFVAAPSWIIER 253 (388)
T ss_dssp -CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGG-GCCEEEECCHHHHHH
T ss_pred -CCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhccCcc-ccEEEEEeeccchhh
Confidence 478999999999999999999999998764444322 2222222333 32 7999998 68 689999999987766
Q ss_pred h
Q 005009 711 F 711 (719)
Q Consensus 711 ~ 711 (719)
+
T Consensus 254 ~ 254 (388)
T d1gdea_ 254 M 254 (388)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.13 E-value=9.1e-07 Score=93.18 Aligned_cols=86 Identities=14% Similarity=0.057 Sum_probs=55.2
Q ss_pred CcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccc--ccccCCCccee--eehhccCC
Q 005009 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT--ADLLGCVPDIA--CYGKLLTG 693 (719)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a--~e~~gv~PDIv--tlgK~Lgg 693 (719)
++..+|+++......++ +..-+++|.++|++||+++|+||++. .+-.+.... ...+| .|++ +++|++||
T Consensus 132 ~~tk~i~~~~p~n~~~~----~~~~l~~i~~ia~~~~~~~i~De~y~-~~~~~~~~~~~~~~~~--~di~~~S~sK~~~g 204 (366)
T d2aeua1 132 KDTLVIITGSTMDLKVI----ELENFKKVINTAKNKEAIVFVDDASG-ARVRLLFNQPPALKLG--ADLVVTSTDKLMEG 204 (366)
T ss_dssp TTEEEEEECBCTTSCBC----CHHHHHHHHHHHHHHTCCEEEECTTH-HHHHHHTTCCCHHHHT--CSEEEEETTSSSSS
T ss_pred CCceEEEEEecCCCCcC----CHHHHHHHHHHhccCcEEEEEecCcc-ccccccccCCCHhhcC--ceEEEecccccccc
Confidence 35677777743132222 33449999999999999999999984 222221111 11233 4676 56787875
Q ss_pred CccchheeEeCHHHHhhhc
Q 005009 694 GVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~~~ 712 (719)
.-+|.+++++++++.+.
T Consensus 205 --~~~G~i~~~~~~i~~~~ 221 (366)
T d2aeua1 205 --PRGGLLAGKKELVDKIY 221 (366)
T ss_dssp --CSCEEEEEEHHHHHHHH
T ss_pred --cceeEEEecHHHHHHHH
Confidence 23577999999988764
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=98.07 E-value=3.9e-05 Score=79.37 Aligned_cols=83 Identities=18% Similarity=0.303 Sum_probs=59.1
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee---eehhccC-CCcc
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVI 696 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv---tlgK~Lg-gG~~ 696 (719)
+.+|.-| ++-.|... +.+.+++|.++|++|++++|.||++..|...+....... .-.+.++ +++|.+| .| +
T Consensus 147 ~v~l~nP--~NPtG~~~-~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~-~~~~~~i~~~S~SK~~~l~G-l 221 (355)
T d1lc5a_ 147 CLFLCTP--NNPTGLLP-ERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPAL-KDNPHIWVLRSLTKFYAIPG-L 221 (355)
T ss_dssp EEEEESS--CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGC-TTCTTEEEEEESTTTTTCTT-T
T ss_pred eeeeecc--cCcccccc-hhhhhhhhhhhccccccccccccceeeeeeecccccccc-cccccceeeccccccccccc-c
Confidence 4455556 56677754 789999999999999999999999987765555332221 1223333 7999988 77 6
Q ss_pred chheeEeCHHHH
Q 005009 697 PLAATLATNAVF 708 (719)
Q Consensus 697 Plsavl~~~~i~ 708 (719)
-+|.++++++..
T Consensus 222 R~G~~i~~~~~~ 233 (355)
T d1lc5a_ 222 RLGYLVNSDDAA 233 (355)
T ss_dssp CCEEEECCCHHH
T ss_pred cccceeccchhh
Confidence 888888875543
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=98.07 E-value=2.2e-05 Score=82.29 Aligned_cols=212 Identities=14% Similarity=0.039 Sum_probs=124.1
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhccc-ccCCCCCCh-------HHHHHHHHHHhccCCCCCCeEEEeCChH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGH-VMFPENVYE-------PALECAELLLQGVGKGWASRAYFSDNGS 471 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~-~~~~~~~~~-------~~~~Lae~L~~~~~~~~~~rv~f~~SGs 471 (719)
-|||-.+ -|-- +|.|++|+.+.+..... .+..+..+. ...++-++++++++.. -+.|.|+++++
T Consensus 4 iYlD~aa------~~p~-~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~-~~~I~~~~~~t 75 (391)
T d1p3wa_ 4 IYLDYSA------TTPV-DPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGAD-PREIVFTSGAT 75 (391)
T ss_dssp EECBTTT------CCCC-CHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCC-GGGEEEESSHH
T ss_pred EEeeCcc------ccCC-CHHHHHHHHHHHHhccccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCC-CCcEEEECCHH
Confidence 4888554 4677 99999999987764322 111122222 2234445677777754 46899999999
Q ss_pred HHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCC
Q 005009 472 TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPP 551 (719)
Q Consensus 472 EA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p 551 (719)
+|+..++..+ .....+.| ..||+.+..|++ ....+..... .+ .
T Consensus 76 ~~l~~~~~~~-~~~~~~~g----------------d~Vv~~~~~~~s-~~~~~~~~~~---~G-----------~----- 118 (391)
T d1p3wa_ 76 ESDNLAIKGA-ANFYQKKG----------------KHIITSKTEHKA-VLDTCRQLER---EG-----------F----- 118 (391)
T ss_dssp HHHHHHHHHH-HHHHGGGC----------------CEEEEETTSCHH-HHHHHHHHHH---TT-----------C-----
T ss_pred HHHHHHHhhh-hhhhcCCC----------------CEEEEeccccch-HHHHHHHHHH---cC-----------C-----
Confidence 9999888876 22222222 356666666555 3222211100 00 0
Q ss_pred cccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccccc
Q 005009 552 TVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHA 631 (719)
Q Consensus 552 ~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg 631 (719)
....++..... . -| .+.+++.+. +++.+|++.-+ +.
T Consensus 119 ------~v~~v~~~~~~-----------------~----~d--------~~~~~~~i~--------~~T~lv~is~~-~n 154 (391)
T d1p3wa_ 119 ------EVTYLAPQRNG-----------------I----ID--------LKELEAAMR--------DDTILVSIMHV-NN 154 (391)
T ss_dssp ------EEEEECCCTTS-----------------C----CC--------HHHHHHHCC--------TTEEEEECCSB-CT
T ss_pred ------EEEEeCCCCCC-----------------e----Ec--------HHHHHHhCC--------CCcEEEEEECC-CC
Confidence 00111111000 0 00 244555553 46788999987 88
Q ss_pred CCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceee--ehhccCCCccchheeEeCHHHHh
Q 005009 632 AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLATNAVFD 709 (719)
Q Consensus 632 ~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvt--lgK~LggG~~Plsavl~~~~i~~ 709 (719)
..|.+.+ +++|.++|++||+++|+|.+|+ +|-.- +-.. ...+|+++ .-|.+|+. -+|++.++++.+.
T Consensus 155 ~tG~~~~----~~~I~~~~~~~~~~~ivD~~~~-~g~~~--~d~~--~~~~D~~~~s~~k~~g~~--g~g~~~~~~~~~~ 223 (391)
T d1p3wa_ 155 EIGVVQD----IAAIGEMCRARGIIYHVDATQS-VGKLP--IDLS--QLKVDLMSFSGHKIYGPK--GIGALYVRRKPRV 223 (391)
T ss_dssp TTCCBCC----HHHHHHHHHHHTCEEEEECTTT-BTTBC--CCTT--TSCCSEEEEESTTTTSCS--SCEEEEECBTTBC
T ss_pred CCeeECC----HHHHHHHhccCCcEEEEeeccc-cCCcc--ccch--hccccccccccccccCCC--ceEEEEEecchhc
Confidence 8999998 8999999999999999999995 43211 2222 23577764 45554331 2577788777554
Q ss_pred hh
Q 005009 710 SF 711 (719)
Q Consensus 710 ~~ 711 (719)
..
T Consensus 224 ~~ 225 (391)
T d1p3wa_ 224 RI 225 (391)
T ss_dssp CC
T ss_pred cc
Confidence 43
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.01 E-value=8.9e-06 Score=86.96 Aligned_cols=176 Identities=12% Similarity=-0.027 Sum_probs=105.2
Q ss_pred HHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCcccccc
Q 005009 446 LECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAME 525 (719)
Q Consensus 446 ~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~gals 525 (719)
.++.+.++++++.+.....+++++|+++...++.+|+|++. +++ +.|.....-|.+..-++.
T Consensus 97 ~~~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~~~~-----------------~~~-~~vi~~~~~H~s~~~a~~ 158 (445)
T d3bc8a1 97 NSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKR-----------------PKA-KYIIWPRIDQKSCFKSMV 158 (445)
T ss_dssp HHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHC-----------------TTC-CEEEEECCCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccCccccccchHHHHHHHHHHHHHhC-----------------CCC-CEEEEcCcccHHHHHHHH
Confidence 34566677766643335678899999888887777744332 112 345556777988877777
Q ss_pred ccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHH
Q 005009 526 AQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYIS 605 (719)
Q Consensus 526 lt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le 605 (719)
..|.... ++ .+.|+.- + ..-| .+.|+
T Consensus 159 ~~g~~~~--------------~v-------------~~~~~~~---------------~----~~id--------~~~l~ 184 (445)
T d3bc8a1 159 TAGFEPV--------------VI-------------ENVLEGD---------------E----LRTD--------LKAVE 184 (445)
T ss_dssp HTTCEEE--------------EE-------------CCEEETT---------------E----EECC--------HHHHH
T ss_pred HcCCeeE--------------EE-------------EeeccCc---------------c----cccC--------HHHHH
Confidence 6652100 00 0011000 0 0011 35677
Q ss_pred HHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCcccc-Cc--cccccccCCCc
Q 005009 606 QNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRL-GV--ETTADLLGCVP 682 (719)
Q Consensus 606 ~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRt-G~--~~a~e~~gv~P 682 (719)
+.|++ ....++++|++... ....|.+.+ +++|.++|++||++||+|+++.++-.. .+ .++...- ..
T Consensus 185 ~~i~~----~~~~~~~~v~~~~~-~~~~G~~~~----~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~--~v 253 (445)
T d3bc8a1 185 AKIQE----LGPEHILCLHSTTA-CFAPRVPDR----LEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVG--RI 253 (445)
T ss_dssp HHHHH----HCGGGEEEEEEESS-CCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHHS--CC
T ss_pred HHHHh----ccccCeEEEEEeCC-CCCCeeehh----HHHHHHHHHHhCCcEEEEccchhhhhhccccchhccCcC--Cc
Confidence 77764 23456888888875 667788887 999999999999999999999643110 01 1222221 35
Q ss_pred ceee--ehhccCCCccchheeEeCH
Q 005009 683 DIAC--YGKLLTGGVIPLAATLATN 705 (719)
Q Consensus 683 DIvt--lgK~LggG~~Plsavl~~~ 705 (719)
|+++ ..|.+++++ ..++++.++
T Consensus 254 d~~~~s~hK~~~~p~-g~~~l~~~~ 277 (445)
T d3bc8a1 254 DAFVQSLDKNFMVPV-GGAIIAGFN 277 (445)
T ss_dssp CEEEEEHHHHHSCCS-SCEEEEESC
T ss_pred ceEEecCccccccCC-CCceeeeCC
Confidence 6665 468887652 445566654
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=98.00 E-value=5.3e-06 Score=88.65 Aligned_cols=100 Identities=13% Similarity=0.030 Sum_probs=64.8
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccc-cCccccccccCC
Q 005009 602 SYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWR-LGVETTADLLGC 680 (719)
Q Consensus 602 ~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGR-tG~~~a~e~~gv 680 (719)
+.|++.|++. ...+.+++|++... ...+|.+.+ +++|.++|++||++||+|+++.++.. .++ +-..-...
T Consensus 197 ~~l~~~i~~~---~~~~~~~~v~~~~~-~~~~g~~~~----l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~-~~~~~~~~ 267 (434)
T d2z67a1 197 EDIENAIKKE---IELGNRPCVLSTLT-FFPPRNSDD----IVEIAKICENYDIPHIINGAYAIQNNYYLE-KLKKAFKY 267 (434)
T ss_dssp HHHHHHHHHH---HHTTCCEEEEEESS-CCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCHHHHH-HHHHHHTS
T ss_pred HHHHHHHHhh---hhcCCceEEEeccC-cCCCccccC----HHHHHHHHHHhCCeEEEeccchhhhhhccc-cccccccC
Confidence 5566666542 12356778888875 567788877 99999999999999999999964321 111 11111234
Q ss_pred Ccceeeeh--hccCCCccchheeEeCH-HHHhhh
Q 005009 681 VPDIACYG--KLLTGGVIPLAATLATN-AVFDSF 711 (719)
Q Consensus 681 ~PDIvtlg--K~LggG~~Plsavl~~~-~i~~~~ 711 (719)
..|+++++ |.++++ ...+++..++ ++.+.+
T Consensus 268 ~~D~~~~s~hK~l~~~-~g~~~~~~~~~~~~~~~ 300 (434)
T d2z67a1 268 RVDAVVSSSDKNLLTP-IGGGLVYSTDAEFIKEI 300 (434)
T ss_dssp CCSEEEEEHHHHHCCC-SSCEEEEESCHHHHHHH
T ss_pred CcceEEEcCccccccC-CCccccccCcHHHHHHH
Confidence 57888765 988765 3456666554 444443
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=97.97 E-value=4.4e-05 Score=79.07 Aligned_cols=200 Identities=11% Similarity=-0.017 Sum_probs=111.5
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCC-CCCeEEEeCChHHHHHHHHHHHHHHhhcccccccccc
Q 005009 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFL 496 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~-~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~ 496 (719)
.|.|.+|+++.+....+........+....+++.+.+..+.. .-+.|+.++++++|+..++.... +.|
T Consensus 14 p~~i~eal~~~~~~~~~~Y~~~~g~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l~-----~~g------ 82 (361)
T d1d2fa_ 14 APCIIEALNQRLMHGVFGYSRWKNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWS-----ETG------ 82 (361)
T ss_dssp CHHHHHHHHHHHTTCCCCCCCSCCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSS-----CTT------
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhhhcc-----ccc------
Confidence 699999999887642221111112345556677776654422 13579999999999988777651 222
Q ss_pred CCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccc
Q 005009 497 GKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHK 576 (719)
Q Consensus 497 ~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~ 576 (719)
.+|+..+-+|.+.. ......+.. .+++|.... +
T Consensus 83 ----------d~Vlv~~P~y~~~~-~~~~~~g~~------------------------------~~~v~~~~~------~ 115 (361)
T d1d2fa_ 83 ----------EGVVIHTPAYDAFY-KAIEGNQRT------------------------------VMPVALEKQ------A 115 (361)
T ss_dssp ----------CEEEEEESCCHHHH-HHHHHTTCE------------------------------EEEEECEEC------S
T ss_pred ----------cccccccccccchh-HHHHhhcce------------------------------EEeeccccc------c
Confidence 36888887776532 222222110 011110000 0
Q ss_pred cccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCc
Q 005009 577 DITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIP 656 (719)
Q Consensus 577 ~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gil 656 (719)
+--+.| .+.+++.+. ..++.++++-.- +.-.|.. .+.+.++++.++|++||++
T Consensus 116 ~~~~~d------------------~~~~~~~~~-------~~~~~~i~l~~p-~NPTG~~-~s~~~~~~i~~~~~~~~~~ 168 (361)
T d1d2fa_ 116 DGWFCD------------------MGKLEAVLA-------KPECKIMLLCSP-QNPTGKV-WTCDELEIMADLCERHGVR 168 (361)
T ss_dssp SSEECC------------------HHHHHHHHT-------STTEEEEEEESS-CTTTCCC-CCTTHHHHHHHHHHHTTCE
T ss_pred cccccc------------------cccchhhcc-------cCCceeEEeccc-ccccccc-cchhhhhhhhhhhhhhhee
Confidence 000011 244555664 235555555443 5555654 4678899999999999999
Q ss_pred EEEeccccCccccCccccccccCCC-ccee---eehhccC-CCccchheeEeC
Q 005009 657 VIFDEVFTGFWRLGVETTADLLGCV-PDIA---CYGKLLT-GGVIPLAATLAT 704 (719)
Q Consensus 657 LI~DEVqTGfGRtG~~~a~e~~gv~-PDIv---tlgK~Lg-gG~~Plsavl~~ 704 (719)
+|.||++..|-..+..... ..... .+.+ +++|..+ .| +-+|.+.+.
T Consensus 169 lI~De~y~~~~~~~~~~~~-~~~~~~~~~v~~~s~SK~~~~~g-~R~g~~~~~ 219 (361)
T d1d2fa_ 169 VISDEIHMDMVWGEQPHIP-WSNVARGDWALLTSGSKSFNIPA-LTGAYGIIE 219 (361)
T ss_dssp EEEECTTTTCBCSSSCCCC-GGGTCCSSEEEEECSHHHHTCGG-GCCEEEEEC
T ss_pred eeecccccccccccccccc-ccccccccccccccccccccccc-ccceeeecc
Confidence 9999999887433432221 11122 2333 5688776 35 566666554
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=97.90 E-value=2.7e-05 Score=80.82 Aligned_cols=148 Identities=15% Similarity=0.040 Sum_probs=93.1
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccC
Q 005009 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~ 497 (719)
.++-.+++.+.++...+++ -+...+|+++|++.++. +.+++++||+.|+..|++.. . -+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~-----G~~v~~~E~~la~~~g~---~~ai~~~sgt~Al~~al~al-~---~~--------- 69 (376)
T d1mdoa_ 11 GAEELAAVKTVLDSGWITT-----GPKNQELEAAFCRLTGN---QYAVAVSSATAGMHIALMAL-G---IG--------- 69 (376)
T ss_dssp CHHHHHHHHHHHHHTCCSS-----SHHHHHHHHHHHHHHCC---SEEEEESCHHHHHHHHHHHT-T---CC---------
T ss_pred CHHHHHHHHHHHhcCCCcC-----CHHHHHHHHHHHHHHCc---CeEEEeCCHHHHHHHHHHHh-C---CC---------
Confidence 3555677777776643322 35678999999999984 68999999999999999865 1 11
Q ss_pred CCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhccccccc
Q 005009 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKD 577 (719)
Q Consensus 498 ~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~ 577 (719)
....||.-.-.|+. +..++...|... .+.+. -|+.+
T Consensus 70 -------~gdeVi~~~~~~~~-~~~ai~~~g~~p--------------v~~d~-------------~~~~~--------- 105 (376)
T d1mdoa_ 70 -------EGDEVITPSMTWVS-TLNMIVLLGANP--------------VMVDV-------------DRDTL--------- 105 (376)
T ss_dssp -------TTCEEEEESSSCHH-HHHHHHHTTCEE--------------EEECB-------------CTTTC---------
T ss_pred -------CCCEEEEecccccc-cccchhccccce--------------eeecc-------------ccccc---------
Confidence 12356666665555 444444333110 00100 00000
Q ss_pred ccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcE
Q 005009 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (719)
Q Consensus 578 ~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilL 657 (719)
+ .| .+.|++.+. .++.|||+--+ .|...+ +.+|+++|++||+++
T Consensus 106 ---~---------~d--------~~~l~~~i~--------~~tkaIi~~h~----~G~~~~----~~~i~~i~~~~~i~v 149 (376)
T d1mdoa_ 106 ---M---------VT--------PEHIEAAIT--------PQTKAIIPVHY----AGAPAD----LDAIYALGERYGIPV 149 (376)
T ss_dssp ---C---------BC--------HHHHHHHCC--------TTEEEECCBCG----GGCCCC----HHHHHHHHHHHTCCB
T ss_pred ---C---------CC--------HHHHHHhcC--------CCCeEEEEeCC----CCCccc----hhHHHHHHHhcCceE
Confidence 0 01 256777764 24667775443 355555 889999999999999
Q ss_pred EEeccccCcc
Q 005009 658 IFDEVFTGFW 667 (719)
Q Consensus 658 I~DEVqTGfG 667 (719)
|.|..|+ +|
T Consensus 150 IeD~a~a-~g 158 (376)
T d1mdoa_ 150 IEDAAHA-TG 158 (376)
T ss_dssp CEECTTC-TT
T ss_pred Eeccchh-cc
Confidence 9999996 54
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=97.89 E-value=1.9e-05 Score=85.06 Aligned_cols=66 Identities=18% Similarity=0.106 Sum_probs=43.7
Q ss_pred EEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccccc------ccCC--Cccee--eehhccC
Q 005009 623 LIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD------LLGC--VPDIA--CYGKLLT 692 (719)
Q Consensus 623 vIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e------~~gv--~PDIv--tlgK~Lg 692 (719)
+++..+ .+..|.+.+ +++|.++|++||++|++||+|..-......+... ..+. ..|++ ++.|.+|
T Consensus 177 v~v~~~-~~~~G~~~d----l~~I~~ia~~~g~~l~vD~A~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg 251 (462)
T d1c4ka2 177 LAVIQL-GTYDGTIYN----AHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQA 251 (462)
T ss_dssp EEEEES-BCTTSEEEC----HHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSS
T ss_pred eEEEEe-eeeccchhh----HHHHHHHHHHcCCEEEEechhhccccccCcCCcchhhccccccccCCccEEEEecCcccc
Confidence 333444 567788888 9999999999999999999996422222221111 1122 24877 5789998
Q ss_pred C
Q 005009 693 G 693 (719)
Q Consensus 693 g 693 (719)
+
T Consensus 252 ~ 252 (462)
T d1c4ka2 252 G 252 (462)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=97.82 E-value=8.1e-05 Score=77.39 Aligned_cols=220 Identities=14% Similarity=0.056 Sum_probs=126.1
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccc-cCCCCCChHHHHHHHHHHhccCCC-CCCeEEEeCChHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHV-MFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIA 477 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~-~~~~~~~~~~~~Lae~L~~~~~~~-~~~rv~f~~SGsEA~E~A 477 (719)
.+||+..|.- .+. - ++.|.+++++.+....+. .......+....+++.+....+.. ..+.++++++|++|...+
T Consensus 29 ~vI~l~~G~p--~~~-~-p~~i~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~al~~~ 104 (375)
T d1o4sa_ 29 DVINLTAGEP--DFP-T-PEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNA 104 (375)
T ss_dssp CCEECCCSSC--SSC-C-CHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHH
T ss_pred CeEECCCcCC--CCC-C-CHHHHHHHHHHHhcCCcCCCCCcCCHHHHHHHHhhhhhccccccccccccccCcHHHHHHHH
Confidence 7888777633 233 3 789999999887653221 111223445556677766543321 146799999999998888
Q ss_pred HHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccC
Q 005009 478 LKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYN 557 (719)
Q Consensus 478 lKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 557 (719)
++... ..| ..|+...-+|....... ...+..
T Consensus 105 ~~~l~-----~~g----------------d~vlv~~P~y~~~~~~~-~~~~~~--------------------------- 135 (375)
T d1o4sa_ 105 FMALL-----DPG----------------DEVIVFSPVWVSYIPQI-ILAGGT--------------------------- 135 (375)
T ss_dssp HHHHC-----CTT----------------CEEEEEESCCTTHHHHH-HHTTCE---------------------------
T ss_pred HHHHh-----CCC----------------CEEEEccCccccchhhh-hccccc---------------------------
Confidence 87661 111 35777666665532221 111100
Q ss_pred cceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCcccc
Q 005009 558 SKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHM 637 (719)
Q Consensus 558 ~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~ 637 (719)
...++.+.. ++ + ..+ .+.++... .......++.-| +.=.|...
T Consensus 136 -~~~~~~~~~-------------~~----~--~~~--------~~~~~~~~-------~~~~~~~~l~nP--~NPTG~~~ 178 (375)
T d1o4sa_ 136 -VNVVETFMS-------------KN----F--QPS--------LEEVEGLL-------VGKTKAVLINSP--NNPTGVVY 178 (375)
T ss_dssp -EEEEECCGG-------------GT----T--CCC--------HHHHHHTC-------CTTEEEEEEESS--CTTTCCCC
T ss_pred -ccccccccc-------------cc----c--cch--------hHHHHHhh-------ccCccEEEEeCC--CCCccCCC
Confidence 000010000 00 0 001 12222211 233445667777 56667655
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccc-cCCCcc---eeeehhccC-CCccchheeEeCHHHHhhh
Q 005009 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADL-LGCVPD---IACYGKLLT-GGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 638 pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~-~gv~PD---IvtlgK~Lg-gG~~Plsavl~~~~i~~~~ 711 (719)
+.+.+++|.++|++|++.+|.||+..-+...+....... .+...- +-+++|.++ .| +-+|.+++.+++.+.+
T Consensus 179 -s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G-~R~G~~~~~~~~~~~~ 255 (375)
T d1o4sa_ 179 -RREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTG-WRVGYLISSEKVATAV 255 (375)
T ss_dssp -CHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGG-GCCEEEECCHHHHHHH
T ss_pred -CHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccCCCCCEEEEeechhhccCCc-cccccccccccchhhh
Confidence 689999999999999999999999875433332221111 111112 337999998 78 7999999999888765
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=97.67 E-value=6.9e-05 Score=74.54 Aligned_cols=36 Identities=17% Similarity=0.328 Sum_probs=32.3
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
|++|-|+| --|||||++|.-|..+|. ++|+||..+=
T Consensus 1 mr~Iai~g-KGGvGKTT~a~nLA~~LA-----~~G~rVllID 36 (269)
T d1cp2a_ 1 MRQVAIYG-KGGIGKSTTTQNLTSGLH-----AMGKTIMVVG 36 (269)
T ss_dssp CEEEEEEE-CTTSSHHHHHHHHHHHHH-----TTTCCEEEEE
T ss_pred CCEEEEEC-CCcCCHHHHHHHHHHHHH-----hCCCcEEEEe
Confidence 67899999 789999999999999995 7899998876
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=97.66 E-value=0.00072 Score=70.26 Aligned_cols=213 Identities=11% Similarity=0.056 Sum_probs=120.4
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCC-CCCeEEEeCChHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIAL 478 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~-~~~rv~f~~SGsEA~E~Al 478 (719)
.+||+..|.- . +-.++.+.+|+++...............+....+++.+.+..+.. .-+.++.+++++++...++
T Consensus 29 ~vi~l~~G~p--~--~~~p~~~~~al~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l~~~~ 104 (389)
T d2gb3a1 29 RIHHLNIGQP--D--LKTPEVFFERIYENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSF 104 (389)
T ss_dssp EEEECSSCCC--C--SCCCTHHHHHHHHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHH
T ss_pred CEEECCCCCC--C--CCCCHHHHHHHHhcCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCCcccceEEecccccccccccc
Confidence 7788765432 2 222677889988765443222212223445567888887654421 1357999999999988888
Q ss_pred HHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCc
Q 005009 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (719)
Q Consensus 479 KlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 558 (719)
+... .. ...|+...-+|....... ...+.
T Consensus 105 ~~l~-----~~----------------gd~V~i~~P~y~~~~~~~-~~~g~----------------------------- 133 (389)
T d2gb3a1 105 AVIA-----NP----------------GDEILVLEPFYANYNAFA-KIAGV----------------------------- 133 (389)
T ss_dssp HHHC-----CT----------------TCEEEEEESCCTHHHHHH-HHHTC-----------------------------
T ss_pred cccc-----cC----------------CCeEEEeCCCCccccccc-cccCc-----------------------------
Confidence 7661 11 236777776665432211 11110
Q ss_pred ceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEE-EEEccccccCCcccc
Q 005009 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGA-LIIEPVVHAAGGMHM 637 (719)
Q Consensus 559 ~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAA-vIvEPViqg~gG~~~ 637 (719)
..+..|..... +... + +.+. . ....++.+ +|.-| +.-.|...
T Consensus 134 -~~~~~~~~~~~---------~~~~--------~---------~~~~---~-----~~~~~~~~~~l~nP--~NPtG~~~ 176 (389)
T d2gb3a1 134 -KLIPVTRRMEE---------GFAI--------P---------QNLE---S-----FINERTKGIVLSNP--CNPTGVVY 176 (389)
T ss_dssp -EEEEEECCGGG---------TSCC--------C---------TTGG---G-----GCCTTEEEEEEESS--CTTTCCCC
T ss_pred -ccccccccccc---------ccch--------h---------hhhh---h-----hcccCccEEEeCCC--Cccccccc
Confidence 01111100000 0000 0 0011 1 11234444 44555 45567655
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee--eehhccCC-CccchheeEeCHH
Q 005009 638 VDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTG-GVIPLAATLATNA 706 (719)
Q Consensus 638 pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlgK~Lgg-G~~Plsavl~~~~ 706 (719)
+.+.+++|.++|++||+++|.||+...+...+.........-...++ .++|.++. | +-+|.+++..+
T Consensus 177 -s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~v~~s~sK~~~~~G-lRiG~~~~~~~ 246 (389)
T d2gb3a1 177 -GKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACG-ARVGCLITRNE 246 (389)
T ss_dssp -CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGG-GCCEEEECSCH
T ss_pred -hHHHHHHHHhhcccCCEEEEEeccccccccccccccccccccccccccccccccccCcc-cceeeeeccch
Confidence 78999999999999999999999998886666544333322223333 45788874 6 78998888654
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.61 E-value=6.1e-05 Score=78.45 Aligned_cols=73 Identities=15% Similarity=0.063 Sum_probs=50.5
Q ss_pred ccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeeh--hccCCCccchheeEeCHHH
Q 005009 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAV 707 (719)
Q Consensus 630 qg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~LggG~~Plsavl~~~~i 707 (719)
....|.+.| ++++.++|++||+++++|.+|+ +|.. ..-.+ ....|+++++ |.++|- .-++.+..+++.
T Consensus 154 ~n~tG~i~p----i~~i~~~~~~~g~~~~vD~~qs-~g~~--~~d~~--~~~~D~~~~s~~K~~~gp-~g~~~~~~~~~~ 223 (388)
T d1h0ca_ 154 ESSTGVLQP----LDGFGELCHRYKCLLLVDSVAS-LGGT--PLYMD--RQGIDILYSGSQKALNAP-PGTSLISFSDKA 223 (388)
T ss_dssp ETTTTEECC----CTTHHHHHHTTTCEEEEECTTT-TTTS--CCCTT--TTTCSEEEEESSSTTCCC-TTCEEEEECHHH
T ss_pred eeccccccC----HHHHHHHhhcccccceeccccc-cccc--ccccc--ccccceecccccccccCC-CceEEEeecHHH
Confidence 456788888 8999999999999999999996 3221 22222 3346877654 888652 234667788877
Q ss_pred Hhhhc
Q 005009 708 FDSFV 712 (719)
Q Consensus 708 ~~~~~ 712 (719)
.+...
T Consensus 224 ~~~~~ 228 (388)
T d1h0ca_ 224 KKKMY 228 (388)
T ss_dssp HHHHT
T ss_pred HHhhh
Confidence 66553
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=97.54 E-value=0.0011 Score=69.90 Aligned_cols=215 Identities=13% Similarity=0.068 Sum_probs=122.3
Q ss_pred CHHHHHHHHHhhhhcccc---cCCC-CCChHHHHHHHHHHhccCCCC--CCeEEEeCChHHHHHHHHHHHHHHhhccccc
Q 005009 418 QIELARDMGYTAARFGHV---MFPE-NVYEPALECAELLLQGVGKGW--ASRAYFSDNGSTAIEIALKMAFRKFSFDHEV 491 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~---~~~~-~~~~~~~~Lae~L~~~~~~~~--~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~ 491 (719)
.+.|.+|+++.+...... .... ...+....+|+.+.+..+... .+.++.++++++|...+++... ..
T Consensus 41 p~~i~eal~~a~~~~~~~~~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~~~~~~l~-----~~-- 113 (418)
T d2r5ea1 41 PKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHV-----DE-- 113 (418)
T ss_dssp CHHHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHC-----CT--
T ss_pred CHHHHHHHHHHHhCCCccCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCccceEEEcCCCchhhhhhhhhcc-----cc--
Confidence 578999999888653211 1111 223445667888887544321 3579999999999999988761 11
Q ss_pred cccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhc
Q 005009 492 LVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSK 571 (719)
Q Consensus 492 ~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~ 571 (719)
...|+..+-+|.+............ ..++....-.
T Consensus 114 --------------gd~vlv~~P~y~~~~~~~~~~g~~~-----------------------------~~v~~~~~~~-- 148 (418)
T d2r5ea1 114 --------------GDEVIIIEPFFDCYEPMVKAAGGIP-----------------------------RFIPLKPNKT-- 148 (418)
T ss_dssp --------------TCEEEEEESCCTTHHHHHHHTTCEE-----------------------------EEEECEESCC--
T ss_pred --------------ccceeccccccchhhHHHHHcCCeE-----------------------------EEEEeccccc--
Confidence 2468888878877443322221100 0011100000
Q ss_pred ccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHH
Q 005009 572 IVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQ 651 (719)
Q Consensus 572 ~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~ 651 (719)
. ....+..+ ..+ .+.++... .....++++=+- +.-.|.+. +++-+++|.++|+
T Consensus 149 -----~--~~~~~~~~--~~~--------~~~~~~~~--------~~~~~~~~i~~p-~NPtG~~~-s~e~~~~l~~~a~ 201 (418)
T d2r5ea1 149 -----G--GTISSADW--VLD--------NNELEALF--------NEKTKMIIINTP-HNPLGKVM-DRAELEVVANLCK 201 (418)
T ss_dssp -----S--SCEEGGGE--ECC--------HHHHHHHC--------CTTEEEEEEESS-CTTTCCCC-CHHHHHHHHHHHH
T ss_pred -----c--cchhhhhh--hhh--------HHHHhhhh--------hccccceecCCc-Cccccccc-cHHHHHHHhhhhh
Confidence 0 00000000 001 12232222 234555554332 55556654 7889999999999
Q ss_pred hcCCcEEEeccccCccccCcc--ccccccCCCccee---eehhccC-CCccchheeEeCHHHHhhhc
Q 005009 652 NRKIPVIFDEVFTGFWRLGVE--TTADLLGCVPDIA---CYGKLLT-GGVIPLAATLATNAVFDSFV 712 (719)
Q Consensus 652 k~gilLI~DEVqTGfGRtG~~--~a~e~~gv~PDIv---tlgK~Lg-gG~~Plsavl~~~~i~~~~~ 712 (719)
+||+++|.||+...|-..+.- -.....+..+-++ .++|.++ .| +=+|.+++.+++.+.+.
T Consensus 202 ~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~pG-lRiG~~~~~~~~i~~~~ 267 (418)
T d2r5ea1 202 KWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTG-WKIGWAYGPEALLKNLQ 267 (418)
T ss_dssp HHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGG-GCCEEEESCHHHHHHHH
T ss_pred cCCeeeecccchhhhccCCCccccccccccccceeeeeecCCccccCCC-cccccccccchhhhhhh
Confidence 999999999999765333321 1112222223333 6899998 78 79999999999887653
|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Azotobacter vinelandii [TaxId: 354]
Probab=97.54 E-value=0.00049 Score=69.05 Aligned_cols=37 Identities=16% Similarity=0.317 Sum_probs=32.3
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
+|+.|.|+| -.|||||++|.-|..+|. ++|+||..+=
T Consensus 1 ~Mr~Iaisg-KGGVGKTT~a~NLA~~LA-----~~G~rVLlID 37 (289)
T d2afhe1 1 AMRQCAIYG-KGGIGKSTTTQNLVAALA-----EMGKKVMIVG 37 (289)
T ss_dssp CCEEEEEEE-CTTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CccEEEEEC-CCCCCHHHHHHHHHHHHH-----HCCCCEEEEe
Confidence 477899988 789999999999999995 7899997765
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=97.53 E-value=0.00017 Score=76.24 Aligned_cols=81 Identities=14% Similarity=0.228 Sum_probs=57.7
Q ss_pred ccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee----eehhccCCCccchheeEeCH
Q 005009 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA----CYGKLLTGGVIPLAATLATN 705 (719)
Q Consensus 630 qg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv----tlgK~LggG~~Plsavl~~~ 705 (719)
+.-.|.+ .+.+.++++.++|++|++++|.||+...|...|.........-.|+.+ .++|....| +-+|.+++.+
T Consensus 193 ~NPtG~~-~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~s~sk~~~~G-~RiG~~~~~~ 270 (420)
T d1vp4a_ 193 HNPAGVT-TSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLAPG-LRIGMVAGSK 270 (420)
T ss_dssp CTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTCGG-GCEEEEECCH
T ss_pred CCccchh-hhhhhhhhhhhhhhcccccccccchhhhccccCcccccccccccccceeEEeccccccccc-cccccccccc
Confidence 3444554 478999999999999999999999998775545432211111133432 577777778 7999999999
Q ss_pred HHHhhhc
Q 005009 706 AVFDSFV 712 (719)
Q Consensus 706 ~i~~~~~ 712 (719)
++++.+.
T Consensus 271 ~~i~~l~ 277 (420)
T d1vp4a_ 271 EFIRKIV 277 (420)
T ss_dssp HHHHHHH
T ss_pred hhhhhhh
Confidence 9988764
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.50 E-value=0.0013 Score=68.71 Aligned_cols=218 Identities=13% Similarity=0.004 Sum_probs=123.6
Q ss_pred CCCcccceeeeccccccccCCCCCCCHHHHHHHHHhhhhccc-ccCCCCCChHHHHHHHHHHhccCCC-CCCeEEEeCCh
Q 005009 393 QKNKFIGQQFDACASWWTQGPDATLQIELARDMGYTAARFGH-VMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNG 470 (719)
Q Consensus 393 dG~~~~~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~-~~~~~~~~~~~~~Lae~L~~~~~~~-~~~rv~f~~SG 470 (719)
+|+ .+||+..|--+. ..+.-.+.|.+|+.+.++...+ ........+....+++.+.+..+.. ..+.++.++++
T Consensus 28 ~G~----~vi~l~~G~P~~-~df~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~i~i~~G~ 102 (395)
T d1xi9a_ 28 KGI----KVIRLNIGDPVK-FDFQPPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAV 102 (395)
T ss_dssp TTC----CCEECCCCCGGG-TTCCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHH
T ss_pred CCC----CeEECCCCCCCC-CCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhhhhccccccccccccccccc
Confidence 466 788887653221 2344267899999998875322 1111222344556777777654421 13579999999
Q ss_pred HHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCC
Q 005009 471 STAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDP 550 (719)
Q Consensus 471 sEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~ 550 (719)
.++...+++.. ...| .+|+...-+|++....+ ...|.
T Consensus 103 ~~~~~~~~~~~-----~~~G----------------d~vlv~~P~y~~~~~~~-~~~g~--------------------- 139 (395)
T d1xi9a_ 103 TEALQLIFGAL-----LDPG----------------DEILVPGPSYPPYTGLV-KFYGG--------------------- 139 (395)
T ss_dssp HHHHHHHHHHH-----CCTT----------------CEEEEEESCCHHHHHHH-HHTTC---------------------
T ss_pred chhhhhhhhhh-----cCCC----------------CEEEEcCCccccchhhh-hhcCC---------------------
Confidence 99988877665 1222 36888888887633222 11111
Q ss_pred CcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc
Q 005009 551 PTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630 (719)
Q Consensus 551 p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViq 630 (719)
..+++|... -++ | ..| .+.+++.+. ....+.++.-| +
T Consensus 140 ---------~~v~v~~~~-----------~~~----~--~~d--------~~~~~~~~~-------~~~~~v~l~~P--~ 176 (395)
T d1xi9a_ 140 ---------KPVEYRTIE-----------EED----W--QPD--------IDDIRKKIT-------DRTKAIAVINP--N 176 (395)
T ss_dssp ---------EEEEEEEEG-----------GGT----S--EEC--------HHHHHHHCC-------TTEEEEEEESS--C
T ss_pred ---------EEEEEeccc-----------ccc----c--cch--------HHHHHHhhc-------ccccEEEecCC--C
Confidence 111111000 000 0 011 234444443 23345667777 4
Q ss_pred cCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee---eehhccC-CCccchheeEe
Q 005009 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GGVIPLAATLA 703 (719)
Q Consensus 631 g~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv---tlgK~Lg-gG~~Plsavl~ 703 (719)
.=.|.+. +.+-+++|.++|++||+++|.||+...+-.-+.........-...++ +++|.++ .| +-+|.+++
T Consensus 177 NPTG~~~-s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G-lRvG~~~~ 251 (395)
T d1xi9a_ 177 NPTGALY-DKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATG-WRLGYMYF 251 (395)
T ss_dssp TTTCCCC-CHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGG-GCCEEEEE
T ss_pred CCccchh-hHHHHHHHHhhhhhcCeeEEeccccccccccccccchhhcCCCCCEEEEeCcchhcccch-hhcEeeEe
Confidence 4556544 78889999999999999999999997653333322222111122333 6999987 47 57776543
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=97.47 E-value=0.0011 Score=69.63 Aligned_cols=212 Identities=8% Similarity=-0.022 Sum_probs=129.0
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCCh-------HHHHHHHHHHhccCCCCCCeEEEeCChHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYE-------PALECAELLLQGVGKGWASRAYFSDNGST 472 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~-------~~~~Lae~L~~~~~~~~~~rv~f~~SGsE 472 (719)
.|||-. ..|-- .+.|.+++.+.+... +.+.....+. ...+.-+.++++++...-+.+.|+++.+|
T Consensus 24 iYld~a------~~~~~-p~~v~~~~~~~~~~~-~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~~~~~~i~~~~~~T~ 95 (405)
T d1jf9a_ 24 AYLDSA------ASAQK-PSQVIDAEAEFYRHG-YAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTE 95 (405)
T ss_dssp EECCTT------TCCCC-CHHHHHHHHHHHHHT-CCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHH
T ss_pred EEEeCc------cccCC-CHHHHHHHHHHHHhc-cCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcccccccCcHHH
Confidence 578843 34556 899999999877653 2221112222 23344556677776322367999999999
Q ss_pred HHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCc
Q 005009 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (719)
Q Consensus 473 A~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (719)
|+..+++... ....+ ....||.....||........+.......
T Consensus 96 ~~~~~~~~~~-~~~~~----------------~g~~il~~~~e~~s~~~~~~~~a~~~g~~------------------- 139 (405)
T d1jf9a_ 96 GINLVANSWG-NSNVR----------------AGDNIIISQMEHHANIVPWQMLCARVGAE------------------- 139 (405)
T ss_dssp HHHHHHHHHH-HHHCC----------------TTCEEEEETTCCGGGTHHHHHHHHHHTCE-------------------
T ss_pred HHHHHHhccc-ccccC----------------CCCEEEEEeCcccchHHHHHHHHHHcCcE-------------------
Confidence 9998887652 22222 23578899998887554433332100000
Q ss_pred ccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 005009 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (719)
Q Consensus 553 ~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~ 632 (719)
...+|... +..+ + .+.++..+ .+++..|.+.-+ ...
T Consensus 140 ------v~~~~~~~-----------------~g~~----~--------~~~~~~~i--------~~~t~lv~~~~v-~~~ 175 (405)
T d1jf9a_ 140 ------LRVIPLNP-----------------DGTL----Q--------LETLPTLF--------DEKTRLLAITHV-SNV 175 (405)
T ss_dssp ------EEEECBCT-----------------TSCB----C--------GGGHHHHC--------CTTEEEEEEESB-CTT
T ss_pred ------EEEECCCC-----------------CCcC----C--------HHHHHHhc--------cCCcEEEEEecC-CCc
Confidence 01111110 0000 0 12233333 357888889887 888
Q ss_pred CccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc-ccccccCCCcceee--ehhccCCCccchheeEeCHHHHh
Q 005009 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLLGCVPDIAC--YGKLLTGGVIPLAATLATNAVFD 709 (719)
Q Consensus 633 gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~-~a~e~~gv~PDIvt--lgK~LggG~~Plsavl~~~~i~~ 709 (719)
.|.+.| ++++.++|+++|+++++|=+|+ . |.. +-.+. ..+|+++ .=|-+| + -=+|++.+++++.+
T Consensus 176 tG~~~p----i~~i~~~~~~~g~~~~vD~~q~-~---g~~~id~~~--~~~D~~~~s~hK~~G-p-~G~g~l~v~~~~~~ 243 (405)
T d1jf9a_ 176 LGTENP----LAEMITLAHQHGAKVLVDGAQA-V---MHHPVDVQA--LDCDFYVFSGHKLYG-P-TGIGILYVKEALLQ 243 (405)
T ss_dssp TCCBCC----HHHHHHHHHHTTCEEEEECTTT-T---TTSCCCHHH--HTCSEEEEEGGGTTS-C-SSCEEEEECHHHHT
T ss_pred ccccCc----hHHhhhHHHHcCCeeeccccee-c---cccccchhh--cCCceeecccccccc-C-CCceeeeechhhhc
Confidence 999999 9999999999999999999996 3 321 22222 3589885 457653 2 12688999999876
Q ss_pred hh
Q 005009 710 SF 711 (719)
Q Consensus 710 ~~ 711 (719)
.+
T Consensus 244 ~~ 245 (405)
T d1jf9a_ 244 EM 245 (405)
T ss_dssp TC
T ss_pred cc
Confidence 54
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.45 E-value=0.00052 Score=72.49 Aligned_cols=91 Identities=18% Similarity=0.231 Sum_probs=63.4
Q ss_pred CCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc-cccccc-CCCcce---eeehhcc
Q 005009 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE-TTADLL-GCVPDI---ACYGKLL 691 (719)
Q Consensus 617 ~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~-~a~e~~-gv~PDI---vtlgK~L 691 (719)
+...+.++.-| +.-.|... +.+.+++|.++|++|++++|.||++..|...|.- .....+ +..+-. ..++|.+
T Consensus 170 ~~~~~i~~~~p--~NPtG~~~-s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 246 (418)
T d1w7la_ 170 SRTKALVLNTP--NNPLGKVF-SREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTF 246 (418)
T ss_dssp TTEEEEEEESS--CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHT
T ss_pred ccccceeccCc--CCcccccc-cHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHccccccccceecccCccc
Confidence 33444555555 44456544 7888999999999999999999999887655542 212112 222222 3689998
Q ss_pred C-CCccchheeEeCHHHHhhh
Q 005009 692 T-GGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 692 g-gG~~Plsavl~~~~i~~~~ 711 (719)
+ .| +-+|.+++.+++++.+
T Consensus 247 ~~pG-~RvG~~v~~~~~~~~l 266 (418)
T d1w7la_ 247 SATG-WKVGWVLGPDHIMKHL 266 (418)
T ss_dssp TCGG-GCCEEEECCHHHHHHH
T ss_pred cCCC-Ccccccccchhhhhhh
Confidence 7 58 7999999999887665
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=97.44 E-value=0.00017 Score=74.01 Aligned_cols=84 Identities=14% Similarity=0.075 Sum_probs=59.3
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeeh--hccCCCcc
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVI 696 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~LggG~~ 696 (719)
++..+.+--+ ....|.+.| ++++.++|++||+++++|=+|+ +|.. .+-.+ ....|+++++ |.++|- .
T Consensus 127 ~~~~v~~~~~-~~~tG~~~~----i~~i~~~~~~~g~~~~vDa~qs-~G~~--~~d~~--~~~~D~~~~s~~K~l~gp-~ 195 (361)
T d1m32a_ 127 TISHIAMVHS-ETTTGMLNP----IDEVGALAHRYGKTYIVDAMSS-FGGI--PMDIA--ALHIDYLISSANKCIQGV-P 195 (361)
T ss_dssp TCCEEEEESE-ETTTTEECC----HHHHHHHHHHHTCEEEEECTTT-TTTS--CCCTT--TTTCSEEEEESSSTTCCC-S
T ss_pred CccceEEEee-ecccccchh----hhhhhhhhcccceeeEeecccc-cCcc--ccccc--ccccceEEeeecccccCC-C
Confidence 4444444454 555788888 9999999999999999999997 4321 12222 3457999887 988762 1
Q ss_pred chheeEeCHHHHhhhcC
Q 005009 697 PLAATLATNAVFDSFVG 713 (719)
Q Consensus 697 Plsavl~~~~i~~~~~~ 713 (719)
=+|.+.++++..+....
T Consensus 196 G~g~l~~~~~~~~~~~~ 212 (361)
T d1m32a_ 196 GFAFVIAREQKLAACKG 212 (361)
T ss_dssp SEEEEEEEHHHHTTCTT
T ss_pred CceEEEechhhhhhhcc
Confidence 25788999988876543
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=97.44 E-value=0.0016 Score=68.23 Aligned_cols=218 Identities=12% Similarity=0.030 Sum_probs=120.1
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccC--CCCCChHHHHHHHHHHhccCCC-------CCCeEEEeCCh
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMF--PENVYEPALECAELLLQGVGKG-------WASRAYFSDNG 470 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~--~~~~~~~~~~Lae~L~~~~~~~-------~~~rv~f~~SG 470 (719)
.+||+..|.-.....-...+.+++++++.++....... .....+....+|+.+.+..+.. .-+.++.++++
T Consensus 31 ~vI~L~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~~~~~~~I~it~G~ 110 (412)
T d1bw0a_ 31 PIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGG 110 (412)
T ss_dssp CCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHH
T ss_pred CcEECcCCCCCCCCCccccHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHHhcCcccccCCCCCCCeEEEeccc
Confidence 66776554321111111146788888877664322111 1122344556677776542110 03579999999
Q ss_pred HHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCC
Q 005009 471 STAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDP 550 (719)
Q Consensus 471 sEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~ 550 (719)
++|+..+++... ..| ..|+..+-+|++....+ ...|.
T Consensus 111 ~~al~~~~~~l~-----~~G----------------d~Vlv~~P~y~~~~~~~-~~~G~--------------------- 147 (412)
T d1bw0a_ 111 SHGILMAITAIC-----DAG----------------DYALVPQPGFPHYETVC-KAYGI--------------------- 147 (412)
T ss_dssp HHHHHHHHHHHC-----CTT----------------CEEEEEESCCTHHHHHH-HHTTC---------------------
T ss_pred ccchhhhhhhhh-----ccc----------------cceeeeeccchhhhhhh-hccCc---------------------
Confidence 999999988651 122 47888888887743222 22211
Q ss_pred CcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccc
Q 005009 551 PTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVH 630 (719)
Q Consensus 551 p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViq 630 (719)
..+.+|-.. -++ + ..+ .+.+++.+. ....+.++.-|-
T Consensus 148 ---------~~~~v~~~~-----------~~~----~--~~~--------~~~l~~~~~-------~~~~~~~l~np~-- 184 (412)
T d1bw0a_ 148 ---------GMHFYNCRP-----------END----W--EAD--------LDEIRRLKD-------DKTKLLIVTNPS-- 184 (412)
T ss_dssp ---------EEEEEEEEG-----------GGT----T--EEC--------HHHHHHHCC-------TTEEEEEEESSC--
T ss_pred ---------ccccccccc-----------ccc----c--chh--------hHHHHhhhh-------cccccccccccc--
Confidence 011111000 000 0 001 233444332 334556666673
Q ss_pred cCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccc--cccC---CCccee---eehhccC-CCccchhee
Q 005009 631 AAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA--DLLG---CVPDIA---CYGKLLT-GGVIPLAAT 701 (719)
Q Consensus 631 g~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~--e~~g---v~PDIv---tlgK~Lg-gG~~Plsav 701 (719)
.-.|.+. +.+.+++|.++|++|++++|.||+...|...|..... .... .....+ .++|.++ .| +-+|.+
T Consensus 185 NPtG~~~-~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~G-~RvG~~ 262 (412)
T d1bw0a_ 185 NPCGSNF-SRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPG-WRLGWL 262 (412)
T ss_dssp TTTCCCC-CHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGG-GCCEEE
T ss_pred ccccccc-hhhhccccccccccCCeeeechhhHHHhccCCCCCccccccccccccccccccccccCccCccCC-CCcccc
Confidence 4445544 7899999999999999999999999888655542111 1111 111122 4799997 47 688888
Q ss_pred EeCH
Q 005009 702 LATN 705 (719)
Q Consensus 702 l~~~ 705 (719)
++.+
T Consensus 263 ~~~~ 266 (412)
T d1bw0a_ 263 LYVD 266 (412)
T ss_dssp EEEC
T ss_pred cccc
Confidence 7753
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=97.37 E-value=0.00045 Score=72.44 Aligned_cols=187 Identities=14% Similarity=0.087 Sum_probs=108.0
Q ss_pred CHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccC
Q 005009 418 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLG 497 (719)
Q Consensus 418 hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~ 497 (719)
..+-.+++.+.++...... ..-+...+|++++++.++ ...+++++||+.|++.|++.. . -++
T Consensus 12 ~~~~~~~~~~~l~~g~~~~---~~g~~v~~fE~~~a~~~g---~~~~v~~~SGt~Al~lal~~l-~---~~~-------- 73 (384)
T d1b9ha_ 12 DDAERNGLVRALEQGQWWR---MGGDEVNSFEREFAAHHG---AAHALAVTNGTHALELALQVM-G---VGP-------- 73 (384)
T ss_dssp CHHHHHHHHHHHHTSCCBT---TTCSHHHHHHHHHHHHTT---CSEEEEESCHHHHHHHHHHHT-T---CCT--------
T ss_pred CHHHHHHHHHHHHcCCeee---cCCHHHHHHHHHHHHHHC---cCeEEEeCCHHHHHHHHHHHc-C---CCC--------
Confidence 3456778888887643211 124578899999999998 468999999999999999865 1 111
Q ss_pred CCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhccccccc
Q 005009 498 KDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKD 577 (719)
Q Consensus 498 ~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~ 577 (719)
..+||.-.-+|.. +..++...|.. + .+.|. .|+.
T Consensus 74 --------gdeVi~p~~t~~a-~~~ai~~~g~~--------p------~~~d~-------------~~~~---------- 107 (384)
T d1b9ha_ 74 --------GTEVIVPAFTFIS-SSQAAQRLGAV--------T------VPVDV-------------DAAT---------- 107 (384)
T ss_dssp --------TCEEEEESSSCTH-HHHHHHHTTCE--------E------EEECB-------------CTTT----------
T ss_pred --------CCEEEEecccccc-ccccccccccc--------c------ccccc-------------cccc----------
Confidence 2356665555543 33333322210 0 00000 0000
Q ss_pred ccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcE
Q 005009 578 ITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPV 657 (719)
Q Consensus 578 ~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilL 657 (719)
++ -| .+.+++.+. .++.+|++..+ .| .... +.+++++|+++|+.+
T Consensus 108 --~~---------~d--------~~~~~~~i~--------~~tk~i~~~~~-~g---~~~d----~~~i~~~~~~~~i~l 152 (384)
T d1b9ha_ 108 --YN---------LD--------PEAVAAAVT--------PRTKVIMPVHM-AG---LMAD----MDALAKISADTGVPL 152 (384)
T ss_dssp --CC---------BC--------HHHHHHHCC--------TTEEEECCBCG-GG---CCCC----HHHHHHHHHHHTCCB
T ss_pred --cc---------cc--------hhhhccccc--------ccccccccccc-cc---cccc----cccchhhhhhhhhhh
Confidence 00 01 134554442 46777877665 44 3333 789999999999999
Q ss_pred EEeccccCccccCccccccccCCCcceee----ehhccCCCccchheeEeC-HHHHh
Q 005009 658 IFDEVFTGFWRLGVETTADLLGCVPDIAC----YGKLLTGGVIPLAATLAT-NAVFD 709 (719)
Q Consensus 658 I~DEVqTGfGRtG~~~a~e~~gv~PDIvt----lgK~LggG~~Plsavl~~-~~i~~ 709 (719)
|-|-.|+ +|- .+.-...|-.-|+.+ ..|.++.|- -|+++++ +++++
T Consensus 153 ieD~a~a-~ga---~~~g~~~g~~g~~~~~Sf~~~K~i~~g~--GG~i~t~~~~~~~ 203 (384)
T d1b9ha_ 153 LQDAAHA-HGA---RWQGKRVGELDSIATFSFQNGKLMTAGE--GGAVVFPDGETEK 203 (384)
T ss_dssp CEECTTC-TTC---EETTEEGGGSSSCEEEECCTTSSSCSSS--CEEEEECTTCHHH
T ss_pred hhhhcee-ccc---ccCCEecCcccccceecccccccccccc--cchhhhhhHHHHH
Confidence 9999995 432 222223333446654 368886542 2455554 44443
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=97.35 E-value=0.00019 Score=73.92 Aligned_cols=72 Identities=13% Similarity=0.061 Sum_probs=49.2
Q ss_pred ccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceee--ehhccCCCccchheeEeCHHH
Q 005009 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTGGVIPLAATLATNAV 707 (719)
Q Consensus 630 qg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvt--lgK~LggG~~Plsavl~~~~i 707 (719)
....|.+.+ ++++.++|+++|+++++|-||+ +|-. ..-.+.+ ..|+++ .-|.++|+ -=++.+..+++.
T Consensus 153 ~~~tg~~~~----i~~i~~~~~~~g~~~~vDa~~~-~g~~--~~~~~~~--~~d~~~~s~~K~~~gp-~g~~~~~~~~~~ 222 (377)
T d1vjoa_ 153 ETSTGARQP----LEGVGELCREFGTLLLVDTVTS-LGGV--PIFLDAW--GVDLAYSCSQKGLGCS-PGASPFTMSSRA 222 (377)
T ss_dssp ETTTTEECC----CTTHHHHHHHHTCEEEEECTTT-TTTS--CCCTTTT--TCSEEECCSSSTTCSC-SSCEEEEECHHH
T ss_pred eccceeeec----hhhhhhhhhhccceEEEecchh-hhhh--hhccccc--ccceeeecccccccCC-CEEEEecchhhH
Confidence 445788888 8999999999999999999995 4221 2333444 456664 45666653 235667788877
Q ss_pred Hhhh
Q 005009 708 FDSF 711 (719)
Q Consensus 708 ~~~~ 711 (719)
.+..
T Consensus 223 ~~~~ 226 (377)
T d1vjoa_ 223 IEKL 226 (377)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 7654
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=97.35 E-value=0.0022 Score=66.79 Aligned_cols=219 Identities=11% Similarity=-0.031 Sum_probs=117.6
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCC-CCCeEEEeCChHHHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIAL 478 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~-~~~rv~f~~SGsEA~E~Al 478 (719)
.+||+..|-- .+...|+|++|+++.++...+.. +....+....+++.+.+..+-. .-+.++.++++++|...++
T Consensus 32 ~vi~l~~g~p----df~~p~~v~~al~~~~~~~~~~Y-~~g~~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~al~~~~ 106 (394)
T d1c7na_ 32 EVVPLSVADM----EFKNPPELIEGLKKYLDETVLGY-TGPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAV 106 (394)
T ss_dssp TCCCCCSSSC----SSCCCHHHHHHHHHHHHHCCCSS-BCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHH
T ss_pred CeEEccCCCC----CCCCCHHHHHHHHHHHhCCCcCC-CCCCHHHHHHHHHHHHHhcCCCCCCcceEeeccchhhhhhhh
Confidence 6677654432 23326899999999887632211 1222334455555555443321 1367999999999999998
Q ss_pred HHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCc
Q 005009 479 KMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNS 558 (719)
Q Consensus 479 KlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 558 (719)
+.. .+.| ..|+...-.|.+..........
T Consensus 107 ~~~-----~~pg----------------d~vi~~~p~~~~~~~~~~~~g~------------------------------ 135 (394)
T d1c7na_ 107 REF-----TKPG----------------DGVIIITPVYYPFFMAIKNQER------------------------------ 135 (394)
T ss_dssp HHH-----CCTT----------------CEEEECSSCCTHHHHHHHTTTC------------------------------
T ss_pred ccc-----cccc----------------cccccccCcccchhhHHhhhhh------------------------------
Confidence 876 1222 3577776666653222211110
Q ss_pred ceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccC
Q 005009 559 KWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMV 638 (719)
Q Consensus 559 ~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~p 638 (719)
..+++|... .+. .+ ..| .+.++..+. .+..-+.++.-| +.=.|.+.
T Consensus 136 -~~v~~~~~~-----------~~~---~~--~~d--------~~~~~~~~~------~~~~~~i~l~~P--~NPTG~v~- 181 (394)
T d1c7na_ 136 -KIIECELLE-----------KDG---YY--TID--------FQKLEKLSK------DKNNKALLFCSP--HNPVGRVW- 181 (394)
T ss_dssp -EEEECCCEE-----------ETT---EE--ECC--------HHHHHHHHT------CTTEEEEEEESS--BTTTTBCC-
T ss_pred -ccccccccc-----------ccc---cc--cch--------hhhhhhhhc------cccceEEEeccc--ccccceec-
Confidence 111111000 000 00 001 123333332 233345566666 34456544
Q ss_pred CHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCc---c--e--eeehhccC-CCccchheeEeCH-HHHh
Q 005009 639 DPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVP---D--I--ACYGKLLT-GGVIPLAATLATN-AVFD 709 (719)
Q Consensus 639 p~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~P---D--I--vtlgK~Lg-gG~~Plsavl~~~-~i~~ 709 (719)
+.+-+++|.++|++|++++|.||++..|-.-+....... ...+ + + ..++|.++ .| +-++.+++.. .+.+
T Consensus 182 s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~-~~~~~~~~~~i~~~s~SK~~~~~G-~R~g~~~~~~~~i~~ 259 (394)
T d1c7na_ 182 KKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQ-SIDEQLADKTITFTAPSKTFNIAG-MGMSNIIIKNPDIRE 259 (394)
T ss_dssp CHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGG-GSCHHHHTTEEEEECSHHHHTCGG-GCCEEEECCCHHHHH
T ss_pred cHHHhhhhhccccccceeEeccccccccccCCccccchh-hhhcccccceeecccccccccccc-cccccccccChhhhh
Confidence 788999999999999999999999987633333221111 1111 1 2 25799887 46 4666566554 4544
Q ss_pred h
Q 005009 710 S 710 (719)
Q Consensus 710 ~ 710 (719)
.
T Consensus 260 ~ 260 (394)
T d1c7na_ 260 R 260 (394)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=97.31 E-value=0.00088 Score=64.65 Aligned_cols=35 Identities=14% Similarity=0.182 Sum_probs=29.1
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeE
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVY 76 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~ 76 (719)
..+.+++.|. +||||||.++-|+..++ ++|++|..
T Consensus 9 ~~~vi~lvGp-~GvGKTTTiaKLA~~~~-----~~g~kV~l 43 (207)
T d1ls1a2 9 DRNLWFLVGL-QGSGKTTTAAKLALYYK-----GKGRRPLL 43 (207)
T ss_dssp SSEEEEEECC-TTTTHHHHHHHHHHHHH-----HTTCCEEE
T ss_pred CCcEEEEECC-CCCCHHHHHHHHHHHHH-----HCCCcEEE
Confidence 3445788998 99999999999999995 67888873
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=97.31 E-value=0.0075 Score=57.87 Aligned_cols=36 Identities=19% Similarity=0.257 Sum_probs=29.9
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.+.+++.|. ||||||+..+-|+..++ ++|++|+..-
T Consensus 6 ~~vi~lvGp-tGvGKTTTiaKLA~~~~-----~~g~kV~lit 41 (207)
T d1okkd2 6 GRVVLVVGV-NGVGKTTTIAKLGRYYQ-----NLGKKVMFCA 41 (207)
T ss_dssp SSEEEEECS-TTSSHHHHHHHHHHHHH-----TTTCCEEEEC
T ss_pred CEEEEEECC-CCCCHHHHHHHHHHHHH-----HCCCcEEEEE
Confidence 356888998 99999999999999884 6788887543
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=97.29 E-value=0.0024 Score=67.41 Aligned_cols=89 Identities=13% Similarity=0.216 Sum_probs=57.5
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccc-c-cc------cCCCcc----eee
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-A-DL------LGCVPD----IAC 686 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a-~-e~------~gv~PD----Ivt 686 (719)
..+.+|.-| +.-.|.+. +.+.+++|.++|++||+++|.||++..+-..|.-+. . +. ....+| +-.
T Consensus 189 ~~~~~l~nP--~NPtG~~~-s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s 265 (428)
T d1iaya_ 189 VKGLILTNP--SNPLGTTL-DKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYS 265 (428)
T ss_dssp EEEEEEESS--CTTTCCCC-CHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEE
T ss_pred ceEEEEccC--CCcccccc-cccccchhheeeccCcEEEEecccccccccCcccccccccccchhhccccccceEEEEec
Confidence 344555566 44456544 678899999999999999999999987643343221 1 10 111333 227
Q ss_pred ehhccC-CCccchheeEe-CHHHHhhh
Q 005009 687 YGKLLT-GGVIPLAATLA-TNAVFDSF 711 (719)
Q Consensus 687 lgK~Lg-gG~~Plsavl~-~~~i~~~~ 711 (719)
++|.++ .| +-+|.+++ .+.+.+.+
T Consensus 266 ~SK~~~~~G-lRiG~~~~~~~~l~~~~ 291 (428)
T d1iaya_ 266 LSKDMGLPG-FRVGIIYSFNDDVVNCA 291 (428)
T ss_dssp STTTSSCGG-GCEEEEEESCHHHHHHH
T ss_pred CCCcccCCC-cccccccccccchhhhh
Confidence 899986 57 68888887 45565544
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=97.29 E-value=0.0035 Score=60.51 Aligned_cols=86 Identities=12% Similarity=0.062 Sum_probs=50.1
Q ss_pred cCcEEEEeCCCCCCCCCCCCch-hHHHHh---hcC-CCEEEEEcCCCC--hHHHHHHHHHHHHhCCCcEEEEEEccCC-C
Q 005009 220 MEILCIVETAGGVASPGPSGSL-QCDLYR---PFR-LPGILVGDGRLG--GISGTISAYESLKLRGYDVVAVVFEDHG-L 291 (719)
Q Consensus 220 ~~d~vivEGagG~~~p~~~~~~-~~dla~---~l~-~pvilV~~~~~g--~i~~~~~~~~~l~~~~~~v~gvi~N~~~-~ 291 (719)
++|++||.++| .+|.++... ..++.+ ..+ ..++||.+...| .++.+.... +. .++-++|+.+.. .
T Consensus 94 ~~d~IlIDTaG--r~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~---~~--~~~~~lI~TKlDet 166 (211)
T d1j8yf2 94 KMEIIIVDTAG--RHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFN---QA--SKIGTIIITKMDGT 166 (211)
T ss_dssp TCSEEEEECCC--SCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHH---HH--CTTEEEEEECTTSC
T ss_pred CCceEEEecCC--cCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhh---cc--cCcceEEEecccCC
Confidence 49999999999 466543221 223322 222 357899886655 333333332 22 357799999993 3
Q ss_pred CCHHHHHHhhcC-CCcEEecCC
Q 005009 292 VNEVPLMSYLRN-RVPVLVLPP 312 (719)
Q Consensus 292 ~~~~~l~~~~~~-~~pvlglP~ 312 (719)
...-.+.+.... ++|+..+-.
T Consensus 167 ~~~G~~l~~~~~~~lPi~~it~ 188 (211)
T d1j8yf2 167 AKGGGALSAVAATGATIKFIGT 188 (211)
T ss_dssp SCHHHHHHHHHTTTCCEEEEEC
T ss_pred CcccHHHHHHHHHCcCEEEEeC
Confidence 444444444433 899876533
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=97.22 E-value=0.0044 Score=59.75 Aligned_cols=43 Identities=21% Similarity=0.325 Sum_probs=32.2
Q ss_pred CCCCCCCCC-eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 30 PLDLPLSHP-TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 30 ~~~~~~~~~-~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
|+++....| .+++.|. ||||||+..+-|+..+. ++|++|...-
T Consensus 1 Pl~~~~~~p~vi~lvGp-tGvGKTTTiAKLA~~~~-----~~g~kV~lit 44 (211)
T d2qy9a2 1 PLNVEGKAPFVILMVGV-NGVGKTTTIGKLARQFE-----QQGKSVMLAA 44 (211)
T ss_dssp CCCCCSCTTEEEEEECC-TTSCHHHHHHHHHHHHH-----TTTCCEEEEC
T ss_pred CCCCCCCCCEEEEEECC-CCCCHHHHHHHHHHHHH-----HCCCcEEEEe
Confidence 344444433 4677898 99999999999999884 6788877654
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=97.10 E-value=0.00052 Score=68.30 Aligned_cols=38 Identities=13% Similarity=0.030 Sum_probs=34.2
Q ss_pred CEEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccC
Q 005009 252 PGILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDH 289 (719)
Q Consensus 252 pvilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~ 289 (719)
-++||.....-++..+...++.++..|+++.|+|+|++
T Consensus 200 ~~~lVt~pe~~~~~~~~r~~~~l~~~gi~~~~vVvN~v 237 (296)
T d1ihua1 200 RLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGV 237 (296)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEE
T ss_pred eeeEecCcchhHHHHHHHHHHHHHhcCCCceEEEEcCC
Confidence 37888887777899999999999999999999999997
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=97.09 E-value=0.0059 Score=62.82 Aligned_cols=53 Identities=11% Similarity=-0.008 Sum_probs=40.8
Q ss_pred HHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHH
Q 005009 422 ARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA 481 (719)
Q Consensus 422 ~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA 481 (719)
++++.+.++.-..++ .-+...+|+++|++.++ ...+++++||+.|...|++..
T Consensus 4 ~~~~~~~l~~~~~~~----~G~~~~~fE~~~~~~~~---~~~~~~~~SgT~Al~lal~~l 56 (374)
T d1o69a_ 4 LKYIEEVFKSNYIAP----LGEFVNRFEQSVKDYSK---SENALALNSATAALHLALRVA 56 (374)
T ss_dssp HHHHHHHHHHTTTSC----TTHHHHHHHHHHHHHHC---CSEEEEESCHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcCC----CCHHHHHHHHHHHHHHC---cCeEEEeCCHHHHHHHHHHHc
Confidence 466777776543221 13667899999999998 468999999999999999876
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.07 E-value=0.0014 Score=67.73 Aligned_cols=72 Identities=14% Similarity=0.074 Sum_probs=49.7
Q ss_pred ccCCccccCCHHHHHHHHHHHHhcC--CcEEEeccccCccccCccccccccCCCcceeee--hhccCCCccchheeEeCH
Q 005009 630 HAAGGMHMVDPLFQRILVKECQNRK--IPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLTGGVIPLAATLATN 705 (719)
Q Consensus 630 qg~gG~~~pp~~fl~~Lr~Lc~k~g--ilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtl--gK~LggG~~Plsavl~~~ 705 (719)
....|...+ ++.+.++|++|+ +++++|=+|+ +|- ...-.+.+ ..|++++ -|+++|- -=+|.+.+++
T Consensus 145 ~~~tg~~~~----~~~~~~~~~~~~~~~~~~vDa~qs-~g~--~pid~~~~--giD~~~~s~~K~l~gP-~G~g~l~vs~ 214 (382)
T d2bkwa1 145 DTSTAVLSD----LKAISQAIKQTSPETFFVVDAVCS-IGC--EEFEFDEW--GVDFALTASQKAIGAP-AGLSISLCSS 214 (382)
T ss_dssp ETTTTEECC----HHHHHHHHHHHCTTSEEEEECTTT-TTT--SCCCTTTT--TCSEEEEESSSTTCCC-SCEEEEEECH
T ss_pred ccccccccc----chhhhhhccccccceeeeeecccc-ccc--cccccccc--CeeEEeecccccCcCC-CchhhhhccH
Confidence 445678888 888899888775 9999999997 321 12333333 3687755 5889751 1258899999
Q ss_pred HHHhhh
Q 005009 706 AVFDSF 711 (719)
Q Consensus 706 ~i~~~~ 711 (719)
++.+..
T Consensus 215 ~~~~~~ 220 (382)
T d2bkwa1 215 RFMDYA 220 (382)
T ss_dssp HHHHHH
T ss_pred HHHhhh
Confidence 887654
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=97.07 E-value=0.0029 Score=66.85 Aligned_cols=88 Identities=18% Similarity=0.187 Sum_probs=57.9
Q ss_pred CcEE-EEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccc-cc----ccCC-----Ccc-ee
Q 005009 618 GCIG-ALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETT-AD----LLGC-----VPD-IA 685 (719)
Q Consensus 618 ~~iA-AvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a-~e----~~gv-----~PD-Iv 685 (719)
.++. -++.-| +.-.|... +.+-++++.++|++||+++|.||++..+-..+..+. .- ...+ .+| ++
T Consensus 188 ~~~~~i~~~nP--~NPtG~~~-s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi 264 (431)
T d1m7ya_ 188 LRVKGVLVTNP--SNPLGTTM-TRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVH 264 (431)
T ss_dssp CCEEEEEEESS--CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEE
T ss_pred CcceEEEecCc--cccccccc-cccccccccccccccCcceeecccccccccCCCCCCCHHHHhhhcccccccccCceEE
Confidence 3444 445556 45556544 789999999999999999999999986643333211 10 0011 112 22
Q ss_pred ---eehhccC-CCccchheeEeCHHHHh
Q 005009 686 ---CYGKLLT-GGVIPLAATLATNAVFD 709 (719)
Q Consensus 686 ---tlgK~Lg-gG~~Plsavl~~~~i~~ 709 (719)
+++|.+| .| +=+|.+++.+++..
T Consensus 265 ~~~s~SK~~~~~G-~RiG~~~~~~~~i~ 291 (431)
T d1m7ya_ 265 VVYSLSKDLGLPG-FRVGAIYSNDDMVV 291 (431)
T ss_dssp EEEESSSSSCCGG-GCEEEEEESCHHHH
T ss_pred EEecCcccccCCC-CccceeccchhhhH
Confidence 6899998 67 68888999887653
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=97.05 E-value=0.0018 Score=68.23 Aligned_cols=170 Identities=14% Similarity=0.045 Sum_probs=111.0
Q ss_pred CCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCccc
Q 005009 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (719)
Q Consensus 439 ~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG 518 (719)
...++....|+++|+++-+. +.++.++||--|+-+++-... +.| ..||+.+..|+|
T Consensus 55 R~~nPT~~~LE~~la~LEg~---~~a~~~~SGmaAi~~~l~~l~-----~~G----------------d~vl~~~~~Yg~ 110 (392)
T d1gc0a_ 55 RISNPTLNLLEARMASLEGG---EAGLALASGMGAITSTLWTLL-----RPG----------------DEVLLGNTLYGC 110 (392)
T ss_dssp --CCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHC-----CTT----------------CEEEEESSCCSH
T ss_pred CCCChHHHHHHHHHHHHhCC---cceeehhhHHHHHHHHHHhhc-----cCC----------------Ceeecccccchh
Confidence 34578889999999998763 678889999988888776551 222 489999999998
Q ss_pred CccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHH
Q 005009 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (719)
Q Consensus 519 ~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~ 598 (719)
.....-... +.+|.- +.|-|.. |
T Consensus 111 t~~l~~~~~--------------~~~Gi~------------------------------~~~~d~~-------d------ 133 (392)
T d1gc0a_ 111 TFAFLHHGI--------------GEFGVK------------------------------LRHVDMA-------D------ 133 (392)
T ss_dssp HHHHHHHTG--------------GGGTCE------------------------------EEEECTT-------C------
T ss_pred hhhhhhhhh--------------ccCCcc------------------------------cccCCcc-------C------
Confidence 432211110 000100 0122210 1
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccccccc
Q 005009 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (719)
Q Consensus 599 ~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~ 678 (719)
.+.++++++ .+...|++|.. -.-..-+.. ++++.++|+++|+++|+|-..+. .+.+.-+
T Consensus 134 --~~~~~~ai~--------~~t~lv~~Esp-~NP~l~v~D----i~~i~~ia~~~g~~~vvDnT~at------P~~~~Pl 192 (392)
T d1gc0a_ 134 --LQALEAAMT--------PATRVIYFESP-ANPNMHMAD----IAGVAKIARKHGATVVVDNTYCT------PYLQRPL 192 (392)
T ss_dssp --HHHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHGGGTCEEEEECTTTH------HHHCCGG
T ss_pred --HHHHHHhCC--------CCCeEEEeccc-ccceeeecc----hHHHHHHHHhcCCEEEEecCccC------ccccChH
Confidence 245666664 36789999986 565666666 99999999999999999999852 1223333
Q ss_pred CCCcceee--ehhccCC-CccchheeEeCHHHHhh
Q 005009 679 GCVPDIAC--YGKLLTG-GVIPLAATLATNAVFDS 710 (719)
Q Consensus 679 gv~PDIvt--lgK~Lgg-G~~Plsavl~~~~i~~~ 710 (719)
..-.|||+ ..|=++| |=.=.|+++++++.+..
T Consensus 193 ~~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~ 227 (392)
T d1gc0a_ 193 ELGADLVVHSATKYLSGHGDITAGIVVGSQALVDR 227 (392)
T ss_dssp GGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHH
T ss_pred HhCCCEEEEecceeecCCcccccccccchhHHHHH
Confidence 33478885 6799976 43445677888876653
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=97.02 E-value=0.0056 Score=59.05 Aligned_cols=41 Identities=22% Similarity=0.366 Sum_probs=31.7
Q ss_pred CCCCCCC-eEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 32 DLPLSHP-TFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 32 ~~~~~~~-~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.++...| .+++.|. ||||||+..+-|+..|. ++|++|+..-
T Consensus 5 ~~~~~~p~vi~lvGp-tGvGKTTTiAKLAa~~~-----~~~~kV~lit 46 (213)
T d1vmaa2 5 NVPPEPPFVIMVVGV-NGTGKTTSCGKLAKMFV-----DEGKSVVLAA 46 (213)
T ss_dssp CCCSSSCEEEEEECC-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred cCCCCCCEEEEEECC-CCCCHHHHHHHHHHHHH-----HCCCceEEEe
Confidence 3344444 4778888 99999999999999985 6788887665
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=97.01 E-value=0.0077 Score=63.03 Aligned_cols=213 Identities=8% Similarity=-0.001 Sum_probs=124.6
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCCh-------HHHHHHHHHHhccCCCCCCeEEEeCChHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYE-------PALECAELLLQGVGKGWASRAYFSDNGST 472 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~-------~~~~Lae~L~~~~~~~~~~rv~f~~SGsE 472 (719)
-|||-.+ .|-- .+.|.+++.+.+.... .+.....+. ...+.-+.++++++...-+.++|++++++
T Consensus 24 iYld~a~------~~~~-p~~v~~~~~~~~~~~~-~n~~s~~~~~~~~~~~~~e~aR~~ia~llga~~~~~i~~~~~tt~ 95 (408)
T d1t3ia_ 24 VYLDNAA------TSQK-PRAVLEKLMHYYENDN-ANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATE 95 (408)
T ss_dssp EECBTTT------CCCC-CHHHHHHHHHHHHHTC-CCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHH
T ss_pred EEeeCcc------ccCC-CHHHHHHHHHHHHhcC-CCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCcccEEeecchHH
Confidence 4888443 4556 8899999998777642 111112222 33344466667776432356899999999
Q ss_pred HHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCc
Q 005009 473 AIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPT 552 (719)
Q Consensus 473 A~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~ 552 (719)
++..++... ....-+. ...|+.....|++............ +..
T Consensus 96 ~~n~~~~~~-~~~~~~~----------------g~~il~s~~e~~s~~~~~~~~~~~~--------------g~~----- 139 (408)
T d1t3ia_ 96 AINLVAYSW-GMNNLKA----------------GDEIITTVMEHHSNLVPWQMVAAKT--------------GAV----- 139 (408)
T ss_dssp HHHHHHHHT-HHHHCCT----------------TCEEEEETTCCGGGTHHHHHHHHHH--------------CCE-----
T ss_pred HHHHHHhhc-cccccCC----------------CCEEEeecccchhhhhhhhhhhhcc--------------Cce-----
Confidence 998877664 2222222 2367777777666433221111000 000
Q ss_pred ccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccC
Q 005009 553 VFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAA 632 (719)
Q Consensus 553 ~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~ 632 (719)
...++.+.. . ..+ .+.+++.+. .++..|.+--+ +..
T Consensus 140 ------v~~~~~~~~--------------~-------~~~--------~~~l~~~~~--------~~t~lv~i~~~-~~~ 175 (408)
T d1t3ia_ 140 ------LKFVQLDEQ--------------E-------SFD--------LEHFKTLLS--------EKTKLVTVVHI-SNT 175 (408)
T ss_dssp ------EEEECBCTT--------------S-------SBC--------HHHHHHHCC--------TTEEEEEEESB-CTT
T ss_pred ------Eeeeecccc--------------c-------ccc--------HHHhhhccC--------CCceEEEEecc-ccc
Confidence 011111100 0 000 234554442 47788888887 899
Q ss_pred CccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeeh--hccCCCccchheeEeCHHHHhh
Q 005009 633 GGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDS 710 (719)
Q Consensus 633 gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~LggG~~Plsavl~~~~i~~~ 710 (719)
.|.+.| ++++.++|+++|+++|+|=+|. +|..= +-... ..+|+++++ |- .|+ --+|++.+++++...
T Consensus 176 tG~~~p----~~~i~~~~~~~g~~~ivDa~q~-~g~~~--id~~~--~~~D~~~~s~hK~-~gp-~G~g~l~v~~~~~~~ 244 (408)
T d1t3ia_ 176 LGCVNP----AEEIAQLAHQAGAKVLVDACQS-APHYP--LDVQL--IDCDWLVASGHKM-CAP-TGIGFLYGKEEILEA 244 (408)
T ss_dssp TCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTSC--CCHHH--HTCSEEEEEGGGT-TSC-TTCEEEEECHHHHHH
T ss_pred ccccCc----HHHHhhhhhccCceeeecccee-ccccc--ccccc--cCCceEEeccccc-cCC-CCccccccchhhhhc
Confidence 999999 8999999999999999999995 43211 22222 347988653 64 443 247889999988764
Q ss_pred h
Q 005009 711 F 711 (719)
Q Consensus 711 ~ 711 (719)
.
T Consensus 245 ~ 245 (408)
T d1t3ia_ 245 M 245 (408)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=96.99 E-value=0.003 Score=66.70 Aligned_cols=171 Identities=12% Similarity=0.052 Sum_probs=105.9
Q ss_pred CCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccC
Q 005009 440 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 440 ~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
..++....|+++|+++-+. +.++.++||-.|+-+++.... + ....||+.+..|+|.
T Consensus 64 ~~nPt~~~LE~~la~LEgg---~~a~~~sSGMaAi~~~l~~l~-----~----------------~Gd~iv~~~~~Yg~t 119 (398)
T d1qgna_ 64 YGNPTTVVLEEKISALEGA---ESTLLMASGMCASTVMLLALV-----P----------------AGGHIVTTTDCYRKT 119 (398)
T ss_dssp GCCHHHHHHHHHHHHHHTC---SEEEEESCHHHHHHHHHHHHS-----C----------------SSCEEEEETTSCHHH
T ss_pred CCChHHHHHHHHHHHHhCC---ceEEEecCcchHHHHHHhhcc-----c----------------ccccccccccccchh
Confidence 4578889999999998763 678999999988888876541 1 224788888888774
Q ss_pred ccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHH
Q 005009 520 TLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASI 599 (719)
Q Consensus 520 t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~ 599 (719)
......+- ..++.- +.|-|. .+ .
T Consensus 120 ~~l~~~~~--------------~~~gi~------------------------------~~~~~~-------~~--~---- 142 (398)
T d1qgna_ 120 RIFIETIL--------------PKMGIT------------------------------ATVIDP-------AD--V---- 142 (398)
T ss_dssp HHHHHHTG--------------GGGTCE------------------------------EEEECS-------SC--H----
T ss_pred hhhhcccc--------------cccccc------------------------------cccccc-------cc--h----
Confidence 32211110 000000 001110 00 0
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccC
Q 005009 600 YSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLG 679 (719)
Q Consensus 600 ~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~g 679 (719)
.+..+..+. .++..|++|.. ..-...++. ++++.++|+++|+++|+|..... .+.+.-+.
T Consensus 143 -~~~~~~~~~--------~~t~~v~~Esp-sNP~l~v~D----i~~ia~ia~~~g~~~vVDnT~at------P~~~~Pl~ 202 (398)
T d1qgna_ 143 -GALELALNQ--------KKVNLFFTESP-TNPFLRCVD----IELVSKLCHEKGALVCIDGTFAT------PLNQKALA 202 (398)
T ss_dssp -HHHHHHHHH--------SCEEEEEEESS-CTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTC------TTTCCTTT
T ss_pred -hhhhhhhcc--------ccceEEEccCc-cccccccch----HHHHHHHHhhcCCEEEecceeec------cccCCchh
Confidence 011222222 47789999986 444344444 99999999999999999998742 23333344
Q ss_pred CCcceee--ehhccCC-CccchheeEeCHHHHhhh
Q 005009 680 CVPDIAC--YGKLLTG-GVIPLAATLATNAVFDSF 711 (719)
Q Consensus 680 v~PDIvt--lgK~Lgg-G~~Plsavl~~~~i~~~~ 711 (719)
.-.|||+ +.|-++| |=+-.|+++.+++.+..+
T Consensus 203 ~GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~ 237 (398)
T d1qgna_ 203 LGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEI 237 (398)
T ss_dssp TTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHH
T ss_pred hCCCEEEEechhhcCcccceeehhhcchhhhhhhh
Confidence 4478884 7899987 334556788888776554
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=96.98 E-value=0.0023 Score=66.32 Aligned_cols=212 Identities=15% Similarity=0.036 Sum_probs=121.5
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhcc-ccc----CCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFG-HVM----FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 474 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~-~~~----~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~ 474 (719)
.|||.. ..|.- +..+.+|+.+.+.... ... ......+...+.-++++++++-. -+.+.|+.++|+++
T Consensus 29 iYLd~a------s~g~~-p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA~llga~-~~ei~~~~~~T~~~ 100 (404)
T d1qz9a_ 29 IYLDGN------SLGAR-PVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGAR-DGEVVVTDTTSINL 100 (404)
T ss_dssp EECCTT------TSCCC-BTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCC-TTSEEECSCHHHHH
T ss_pred EEcCCc------ccccC-CHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHhCCC-CCcEEEecCchHHH
Confidence 688843 47777 8899999988775421 100 00112345567778888888754 46799999999999
Q ss_pred HHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCccc
Q 005009 475 EIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVF 554 (719)
Q Consensus 475 E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~ 554 (719)
..++..+......+ .....+|..+..+|.......... ... . . .+
T Consensus 101 ~~~~~~~~~~~~~~---------------~~~~~vi~~~~~~~~~~~~~~~~~-~~~-~--------------~-~~--- 145 (404)
T d1qz9a_ 101 FKVLSAALRVQATR---------------SPERRVIVTETSNFPTDLYIAEGL-ADM-L--------------Q-QG--- 145 (404)
T ss_dssp HHHHHHHHHHHHHH---------------STTCCEEEEETTSCHHHHHHHHHH-HHH-H--------------C-SS---
T ss_pred HHHhhhhhhhhccc---------------CCCcEEEEeccccchHHHHHHhhh-hee-e--------------e-ec---
Confidence 88887653222221 112345555655554321111100 000 0 0 00
Q ss_pred ccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCc
Q 005009 555 MYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGG 634 (719)
Q Consensus 555 ~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG 634 (719)
+..+ . ..+ .+.+++.+. .++..|.+--+ ....|
T Consensus 146 -------~~~~-~------------~~~------------------~~~~~~~i~--------~~T~lV~i~~v-~~~tG 178 (404)
T d1qz9a_ 146 -------YTLR-L------------VDS------------------PEELPQAID--------QDTAVVMLTHV-NYKTG 178 (404)
T ss_dssp -------CEEE-E------------ESS------------------GGGHHHHCS--------TTEEEEEEESB-CTTTC
T ss_pred -------eecc-c------------ccc------------------chhHHHhcC--------CCceEEEEecc-ccccc
Confidence 0000 0 000 022334443 46778888887 89999
Q ss_pred cccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeeh--hccCCCccchheeEeCHHHHhh
Q 005009 635 MHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFDS 710 (719)
Q Consensus 635 ~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~LggG~~Plsavl~~~~i~~~ 710 (719)
.+.| +++|.++|+++|+++++|=+|+ +|..- .-.+ ...+|+++++ |-+.+|--=.+.+..+++..+.
T Consensus 179 ~~~p----v~~i~~~~~~~~~~~~vD~~q~-~g~~~--~~~~--~~~~d~~~~s~~K~~~~~~g~~g~~~~~~~~~~~ 247 (404)
T d1qz9a_ 179 YMHD----MQALTALSHECGALAIWDLAHS-AGAVP--VDLH--QAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDL 247 (404)
T ss_dssp BBCC----HHHHHHHHHHHTCEEEEECTTT-TTTSC--CCHH--HHTCSEEEECSSSTTCCCTTCCCEEEECTTTTTT
T ss_pred ceec----HHHHhccccccccceeEEeecc-ccccc--cccc--cccceEEEEechhhcccCCceEEEEEechhhhhh
Confidence 9999 9999999999999999999996 43221 2222 2356766543 7664431113456666665543
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=96.95 E-value=0.0027 Score=65.60 Aligned_cols=55 Identities=13% Similarity=-0.009 Sum_probs=43.0
Q ss_pred HHHHHHHHHhhhhcccccCCCCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHH
Q 005009 419 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA 481 (719)
Q Consensus 419 P~V~~Av~~q~~~~~~~~~~~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA 481 (719)
.+-.+++.+.++...++ .-+...+|+++|++.+| .+.+++++||+.|+..|++..
T Consensus 12 ~~~~~~v~~~l~~~~~~-----~G~~v~~fE~~~~~~~g---~k~ai~~~Sgt~Al~~al~al 66 (371)
T d2fnua1 12 KEDKKAVLEVLNSKQLT-----QGKRSLLFEEALCEFLG---VKHALVFNSATSALLTLYRNF 66 (371)
T ss_dssp HHHHHHHHHHHTSSCCS-----SSHHHHHHHHHHHHHHT---CSEEEEESCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCCcc-----CCHHHHHHHHHHHHHHC---cCeEEEEecHHHHHHHHHHHh
Confidence 44566788877653332 24678899999999998 468999999999999999976
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.91 E-value=0.0028 Score=66.49 Aligned_cols=82 Identities=11% Similarity=0.050 Sum_probs=55.7
Q ss_pred CcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceee--ehhccCC-C
Q 005009 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTG-G 694 (719)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvt--lgK~Lgg-G 694 (719)
.+..+|++|.. ..-..-++. +++|+++|+++|+++|+|....+ .+.+.-+..-.|||+ +.|-++| |
T Consensus 132 ~~t~li~~Etp-sNP~l~v~D----i~~i~~iA~~~g~~~vVDnT~at------P~~~~Pl~~GaDiVvhS~TKyi~Ghs 200 (380)
T d1ibja_ 132 PQTKLVWLESP-TNPRQQISD----IRKISEMAHAQGALVLVDNSIMS------PVLSRPLELGADIVMHSATKFIAGHS 200 (380)
T ss_dssp SSEEEEEECSS-CTTTCCCCC----HHHHHHHHHTTTCEEEEECTTTC------TTTCCGGGTTCSEEEEETTTTTTCSS
T ss_pred cCccEEEeccc-ccccccccc----HHHHHHHHHHcCCeEEeeccccc------cccccccccCCCEEEecccceecccc
Confidence 47889999986 555556666 89999999999999999999753 123333334478884 7899987 3
Q ss_pred ccchheeEeC-HHHHhh
Q 005009 695 VIPLAATLAT-NAVFDS 710 (719)
Q Consensus 695 ~~Plsavl~~-~~i~~~ 710 (719)
=.=.|+++++ +++++.
T Consensus 201 Dv~~G~v~~~~~~~~~~ 217 (380)
T d1ibja_ 201 DVMAGVLAVKGEKLAKE 217 (380)
T ss_dssp CCCCEEEEECSHHHHHH
T ss_pred CccccccccchhhHHHH
Confidence 1223444555 444443
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=96.68 E-value=0.0092 Score=62.78 Aligned_cols=169 Identities=12% Similarity=0.054 Sum_probs=107.8
Q ss_pred CCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCccc
Q 005009 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (719)
Q Consensus 439 ~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG 518 (719)
...++....|+++|+++-+. +.++.++||-.|+-+++-..+ +.| ..||+.++.|.|
T Consensus 59 R~~nPT~~~LE~~la~LEgg---~~a~~~sSGmaAi~~~l~~ll-----~~G----------------d~vi~~~~~Yg~ 114 (397)
T d1y4ia1 59 RLGNPTTDALEKKLAVLERG---EAGLATASGISAITTTLLTLC-----QQG----------------DHIVSASAIYGC 114 (397)
T ss_dssp TTSCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHC-----CTT----------------CEEEEESSSCHH
T ss_pred CCCCHHHHHHHHHHHHHhCC---ccceeehHHHHHHHHHHhhcc-----CCC----------------Ceeeeecccccc
Confidence 45688899999999998763 578889999999887775441 222 378888888887
Q ss_pred CccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHH
Q 005009 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (719)
Q Consensus 519 ~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~ 598 (719)
.....-..- ..+|.- +.|-|. .|
T Consensus 115 t~~~~~~~l--------------~~~Gi~------------------------------~~~vd~-------~d------ 137 (397)
T d1y4ia1 115 THAFLSHSM--------------PKFGIN------------------------------VRFVDA-------GK------ 137 (397)
T ss_dssp HHHHHHTHH--------------HHTTCE------------------------------EEEECT-------TS------
T ss_pred cchhhhccc--------------CCCceE------------------------------eeccCC-------CC------
Confidence 432211100 000100 001111 01
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccccccc
Q 005009 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (719)
Q Consensus 599 ~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~ 678 (719)
.+.+++.+. .+...|.+|.. ..-..-+.. ++++.++|+++|+++|+|-.... .+.++-+
T Consensus 138 --~~~~~~~i~--------~~Tklv~~Esp-~NP~l~v~D----i~~i~~iA~~~gi~~vvDnT~at------P~~~~Pl 196 (397)
T d1y4ia1 138 --PEEIRAAMR--------PETKVVYIETP-ANPTLSLVD----IETVAGIAHQQGALLVVDNTFMS------PYCQQPL 196 (397)
T ss_dssp --HHHHHHHCC--------TTEEEEEEESS-CTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTC------TTTCCGG
T ss_pred --HHHHHHhcC--------CCCcEEEecCC-cccceeecc----cHHHHHHhhcCCceEEecCcccC------cccCcch
Confidence 245666663 47889999986 444445555 89999999999999999998632 2333333
Q ss_pred CCCcceee--ehhccCC-CccchheeEeCHHHHh
Q 005009 679 GCVPDIAC--YGKLLTG-GVIPLAATLATNAVFD 709 (719)
Q Consensus 679 gv~PDIvt--lgK~Lgg-G~~Plsavl~~~~i~~ 709 (719)
..-.||++ +-|=++| +=.=.|+++++++.+.
T Consensus 197 ~~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~ 230 (397)
T d1y4ia1 197 QLGADIVVHSVTKYINGHGDVIGGIIVGKQEFID 230 (397)
T ss_dssp GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHH
T ss_pred hcCCCEEEEehhhhcCCCcceeeeccCCCHHHHH
Confidence 33468885 6799986 3234567778876554
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=96.68 E-value=0.0031 Score=64.89 Aligned_cols=70 Identities=19% Similarity=0.206 Sum_probs=47.0
Q ss_pred CCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeeh--hccCCCccchheeEeCHHHHh
Q 005009 632 AGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYG--KLLTGGVIPLAATLATNAVFD 709 (719)
Q Consensus 632 ~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlg--K~LggG~~Plsavl~~~~i~~ 709 (719)
..|...+ .+.+.++|+++|+++++|-+|+ +| +..+-.+. ...|+++++ |+++|- -=+|.+..+++..+
T Consensus 154 ~tG~~~~----~~~i~~~~~~~~~~~~vD~~ss-~g--~~pid~~~--~~~d~~~~s~~K~~~gp-~G~g~~~~~~~~~~ 223 (388)
T d2ch1a1 154 SSGLLQP----LEGVGQICHQHDCLLIVDAVAS-LC--GVPFYMDK--WEIDAVYTGAQKVLGAP-PGITPISISPKALD 223 (388)
T ss_dssp TTTEECC----CTTHHHHHHHTTCEEEEECTTT-BT--TBCCCTTT--TTCCEEECCCC-CCCCC-SSCEEEEECHHHHH
T ss_pred ccccccc----hhhhcchhccccceeeeeeeec-cc--ccccchhc--cCceEEEEccccccCCC-CeEEEEeccHHHHH
Confidence 3577777 7889999999999999999997 32 22333333 356888765 556542 12566778877666
Q ss_pred hh
Q 005009 710 SF 711 (719)
Q Consensus 710 ~~ 711 (719)
..
T Consensus 224 ~~ 225 (388)
T d2ch1a1 224 VI 225 (388)
T ss_dssp HH
T ss_pred hh
Confidence 44
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.64 E-value=0.0073 Score=65.05 Aligned_cols=83 Identities=13% Similarity=-0.025 Sum_probs=60.4
Q ss_pred CCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCC-Ccceeee--hhccCC
Q 005009 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGC-VPDIACY--GKLLTG 693 (719)
Q Consensus 617 ~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv-~PDIvtl--gK~Lgg 693 (719)
+..+.+|+.--. ....|.+-| +++|.++|++||+.|-+|=.+.|+...-.-.-.-..|+ ..|-+|+ -|.++.
T Consensus 233 g~~p~~VvataG-tt~~G~iDp----l~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~ 307 (476)
T d1js3a_ 233 GLIPFFVVATLG-TTSCCSFDN----LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLV 307 (476)
T ss_dssp TCEEEEEEEEBS-CTTTCCBCC----HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSC
T ss_pred CCCcEEEeecCC-Cccceeecc----HHHHHHHHHhcCcEEEEecccchhhhhhcchhhhhcCCcccceeeecCcccccc
Confidence 345566666654 667789988 99999999999999999999877644333332223355 4788875 688776
Q ss_pred CccchheeEeCH
Q 005009 694 GVIPLAATLATN 705 (719)
Q Consensus 694 G~~Plsavl~~~ 705 (719)
- ++.|+++.++
T Consensus 308 P-~~~g~~l~r~ 318 (476)
T d1js3a_ 308 N-FDCSAMWVKR 318 (476)
T ss_dssp C-SSCEEEEESC
T ss_pred C-Ccceeecccc
Confidence 6 4788888885
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=96.47 E-value=0.024 Score=57.85 Aligned_cols=206 Identities=13% Similarity=0.037 Sum_probs=117.5
Q ss_pred ceeeeccccccccCCCCCCCHHHHHHHHHhhhhcccccCCCCCChH-------HHHHHHHHHhccCCCCCCeEEEeCChH
Q 005009 399 GQQFDACASWWTQGPDATLQIELARDMGYTAARFGHVMFPENVYEP-------ALECAELLLQGVGKGWASRAYFSDNGS 471 (719)
Q Consensus 399 ~~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~~~~~~~~~-------~~~Lae~L~~~~~~~~~~rv~f~~SGs 471 (719)
|-|||-.+ .+.- .+.|.+|+.+.+.... .+ +...+.. ..+.-++|+++++-. -+.+.|++++|
T Consensus 2 ~iyld~a~------~~~~-p~~v~ea~~~~~~~~~-~n-p~~~~~~~~~~~~~~~~aR~~ia~l~~~~-~~~i~~~~~~T 71 (376)
T d1eg5a_ 2 RVYFDNNA------TTRV-DDRVLEEMIVFYREKY-GN-PNSAHGMGIEANLHMEKAREKVAKVLGVS-PSEIFFTSCAT 71 (376)
T ss_dssp CEECBTTT------CCCC-CHHHHHHHHHHHHTCC-CC-TTCSSHHHHHHHHHHHHHHHHHHHHHTSC-GGGEEEESCHH
T ss_pred EEEEECcc------cccC-CHHHHHHHHHHHHHcC-CC-CccccHHHHHHHHHHHHHHHHHHHHcCCC-CCcEEEECCHH
Confidence 36888533 5666 8999999988876531 11 1122222 222234666777643 36899999999
Q ss_pred HHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCC
Q 005009 472 TAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPP 551 (719)
Q Consensus 472 EA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p 551 (719)
|+.-.++....... ..+..++.....+|+.....+...... +.
T Consensus 72 ~~l~~~~~~~~~~~------------------~~~g~~v~~~~~~~~~~~~~~~~~~~~--------------g~----- 114 (376)
T d1eg5a_ 72 ESINWILKTVAETF------------------EKRKRTIITTPIEHKAVLETMKYLSMK--------------GF----- 114 (376)
T ss_dssp HHHHHHHHHHHHHT------------------TTTCCEEEECTTSCHHHHHHHHHHHHT--------------TC-----
T ss_pred HHHHhhhhcccccc------------------cccCcccccccccchhhHHHHHHHHhc--------------CC-----
Confidence 99888887652211 123356666666776544433221000 00
Q ss_pred cccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEcccccc
Q 005009 552 TVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHA 631 (719)
Q Consensus 552 ~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg 631 (719)
....+|..... . -| .+.+++.+. +++..|++--+ ..
T Consensus 115 ------~v~~vp~~~~~-------------~--------id--------~~~l~~~i~--------~~t~lv~is~v-~~ 150 (376)
T d1eg5a_ 115 ------KVKYVPVDSRG-------------V--------VK--------LEELEKLVD--------EDTFLVSIMAA-NN 150 (376)
T ss_dssp ------EEEECCBCTTS-------------C--------BC--------HHHHHHHCC--------TTEEEEEEESB-CT
T ss_pred ------EEEEEcCCCCC-------------e--------EC--------HHHHHHhcC--------CCceEEEEECC-cc
Confidence 00111111000 0 01 245555653 46777788776 88
Q ss_pred CCccccCCHHHHHHHHHHHHhc--CCcEEEeccccCccccCccccccccCCCccee--eehhccCCCccchheeEeCHH
Q 005009 632 AGGMHMVDPLFQRILVKECQNR--KIPVIFDEVFTGFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLATNA 706 (719)
Q Consensus 632 ~gG~~~pp~~fl~~Lr~Lc~k~--gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv--tlgK~LggG~~Plsavl~~~~ 706 (719)
..|.+.+ .+.+.++|+++ |+++++|.+|. +|..- +-.. ...+|++ +.-|-+|. .-.+++..+++
T Consensus 151 ~tG~~~~----~~~i~~~~~~~~~~~~~~vD~~q~-~g~~~--~d~~--~~~~D~~~~s~~K~~gp--~G~~~l~~~~~ 218 (376)
T d1eg5a_ 151 EVGTIQP----VEDVTRIVKKKNKETLVHVDAVQT-IGKIP--FSLE--KLEVDYASFSAHKFHGP--KGVGITYIRKG 218 (376)
T ss_dssp TTCBBCC----HHHHHHHHHHHCTTCEEEEECTTT-TTTSC--CCCT--TTCCSEEEEEGGGGTSC--TTCEEEEECTT
T ss_pred ccceeee----ehhhhhhhhhcccCceeEEEeeec-ccccc--cccc--ccCccceecccceeecC--CCceeEEeccC
Confidence 8999988 88999988555 99999999995 43332 2222 2357876 45677542 12345555544
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=96.45 E-value=0.0051 Score=63.44 Aligned_cols=81 Identities=17% Similarity=0.082 Sum_probs=57.2
Q ss_pred CCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcC--CcEEEeccccCccccCccccccccCCCcceeee--hhccC
Q 005009 617 SGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRK--IPVIFDEVFTGFWRLGVETTADLLGCVPDIACY--GKLLT 692 (719)
Q Consensus 617 ~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~g--ilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtl--gK~Lg 692 (719)
.+-++.+..|.. .|.+.+ .+.+.++|++|+ +++++|=|++ +|- ...-.+.++ .|+++. -|+|+
T Consensus 121 ~~~v~~~h~eTs----tG~~~~----i~~i~~~~~~~~~~~l~~vDavss-~g~--~~i~~d~~~--iD~~~~~sqK~l~ 187 (348)
T d1iuga_ 121 YAGLLLVHSETS----TGALAD----LPALARAFKEKNPEGLVGADMVTS-LLV--GEVALEAMG--VDAAASGSQKGLM 187 (348)
T ss_dssp CSEEEEESEETT----TTEECC----HHHHHHHHHHHCTTCEEEEECTTT-BTT--BCCCSGGGT--CSEEEEESSSTTC
T ss_pred CCeeEEEecchh----hhhhcc----HHHHHHHHHhhhccceeechhhhc-ccc--ccccccccc--CCEEEecccccee
Confidence 345566666664 468888 899999999985 7888999996 422 134444444 577754 49997
Q ss_pred C--CccchheeEeCHHHHhhhcC
Q 005009 693 G--GVIPLAATLATNAVFDSFVG 713 (719)
Q Consensus 693 g--G~~Plsavl~~~~i~~~~~~ 713 (719)
| | +|.++.+++..+.+..
T Consensus 188 gppG---~~~v~~s~~~le~~~~ 207 (348)
T d1iuga_ 188 CPPG---LGFVALSPRALERLKP 207 (348)
T ss_dssp CCSC---EEEEEECHHHHHTCCC
T ss_pred cCCc---eeeeeechHHHhhhcc
Confidence 6 7 5889999998887643
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=96.38 E-value=0.013 Score=61.35 Aligned_cols=169 Identities=14% Similarity=0.110 Sum_probs=101.0
Q ss_pred CCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCccc
Q 005009 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (719)
Q Consensus 439 ~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG 518 (719)
...++....|+++|+++-+. +.++.++||-.|+-+++-... +. ...||+.+..|.|
T Consensus 46 R~~nPt~~~le~~la~LEgg---~~a~~~sSGMaAi~~~l~~l~-----~~----------------gd~vv~~~~~yg~ 101 (384)
T d1cs1a_ 46 RRGNPTRDVVQRALAELEGG---AGAVLTNTGMSAIHLVTTVFL-----KP----------------GDLLVAPHDCYGG 101 (384)
T ss_dssp TTCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHC-----CT----------------TCEEEEETTCCHH
T ss_pred CCCCHHHHHHHHHHHHHhCC---CceEEecChHHHHHHHHhhcc-----cc----------------cceecccccccch
Confidence 34578889999999998763 679999999888877766541 11 2367777777765
Q ss_pred CccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHH
Q 005009 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (719)
Q Consensus 519 ~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~ 598 (719)
... -+.-.- ..++. .+ .|-|. .|
T Consensus 102 t~~-~~~~~~-------------~~~g~--------------~~----------------~~~d~-------~d------ 124 (384)
T d1cs1a_ 102 SYR-LFDSLA-------------KRGCY--------------RV----------------LFVDQ-------GD------ 124 (384)
T ss_dssp HHH-HHHHHH-------------TTTSC--------------EE----------------EEECT-------TC------
T ss_pred hhh-hhhhhh-------------ccccc--------------cc----------------ccccC-------CC------
Confidence 322 111110 00000 00 01110 01
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccccccc
Q 005009 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (719)
Q Consensus 599 ~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~ 678 (719)
.+.++..+. .+..+|++|.. -.-..-++. ++++.++|+++|+++|+|..... .+.+.-+
T Consensus 125 --~~~~~~~~~--------~~t~~v~~Esp-sNP~l~v~D----i~~i~~ia~~~g~~~vVDNT~at------P~~~~Pl 183 (384)
T d1cs1a_ 125 --EQALRAALA--------EKPKLVLVESP-SNPLLRVVD----IAKICHLAREVGAVSVVDNTFLS------PALQNPL 183 (384)
T ss_dssp --HHHHHHHHH--------TCCSEEEEECS-CTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTC------TTTCCGG
T ss_pred --HHHHHhhcc--------ccccEEEEecc-ccccceecc----HHHHhhhhhhcCcEEEEeccccC------ccccccc
Confidence 134556665 24558999996 444444455 88999999999999999999832 1222223
Q ss_pred CCCcceee--ehhccCC-CccchheeEeC-HHHHh
Q 005009 679 GCVPDIAC--YGKLLTG-GVIPLAATLAT-NAVFD 709 (719)
Q Consensus 679 gv~PDIvt--lgK~Lgg-G~~Plsavl~~-~~i~~ 709 (719)
..-.|||+ ..|-++| |=.=.|+++++ +++.+
T Consensus 184 ~~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~ 218 (384)
T d1cs1a_ 184 ALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVT 218 (384)
T ss_dssp GGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHH
T ss_pred ccCCCEEEEccccccccCCCcccccccCCchhhhh
Confidence 33478885 7899976 32334446664 44443
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=96.07 E-value=0.016 Score=59.17 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=30.7
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
..|=|||+ .|+|||++...|++.+. .+|++|+..-
T Consensus 52 ~~igitG~-pGaGKSTli~~l~~~~~-----~~g~~vaVia 86 (323)
T d2qm8a1 52 IRVGITGV-PGVGKSTTIDALGSLLT-----AAGHKVAVLA 86 (323)
T ss_dssp EEEEEECC-TTSCHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred eEEeeeCC-CCCCHHHHHHHHHHHHh-----hcCCceeeee
Confidence 46899998 99999999999999985 6788888776
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=96.01 E-value=0.021 Score=60.42 Aligned_cols=166 Identities=15% Similarity=0.099 Sum_probs=101.6
Q ss_pred CCCChHHHHHHHHHHhccCCCCCCeEEEeCChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCccc
Q 005009 439 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHG 518 (719)
Q Consensus 439 ~~~~~~~~~Lae~L~~~~~~~~~~rv~f~~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG 518 (719)
...++....|+++|+++=+. +.++.++||-.|+-+++.... +. ...||+.+..|+|
T Consensus 54 R~~nPT~~~LE~~la~LE~~---~~a~~~~SGmaAi~~~~~~l~-----~~----------------gd~il~~~~~Yg~ 109 (421)
T d2ctza1 54 RIMNPTVDVLEKRLAALEGG---KAALATASGHAAQFLALTTLA-----QA----------------GDNIVSTPNLYGG 109 (421)
T ss_dssp TTBCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHHC-----CT----------------TCEEEECSCCCHH
T ss_pred CCCCHHHHHHHHHHHHHhCC---CeEEEecChHHHHHHHHHhhc-----cc----------------ccceeecCCcCCc
Confidence 35688899999999998663 678999999888877775441 11 2489999999998
Q ss_pred CccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHH
Q 005009 519 DTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLAS 598 (719)
Q Consensus 519 ~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~ 598 (719)
.....-..- ..++. . +.|-|. .+.
T Consensus 110 t~~l~~~~~--------------~~~gi-------------~-----------------~~~~d~-------~~~----- 133 (421)
T d2ctza1 110 TFNQFKVTL--------------KRLGI-------------E-----------------VRFTSR-------EER----- 133 (421)
T ss_dssp HHHHHHTHH--------------HHTTC-------------E-----------------EEECCT-------TCC-----
T ss_pred hhHHHHHHH--------------hhccc-------------c-----------------ceeccc-------ccC-----
Confidence 422211100 00000 0 001110 000
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccccccc
Q 005009 599 IYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLL 678 (719)
Q Consensus 599 ~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~ 678 (719)
.+..+..+ ..+..+|++|.. ..--.-++. +++|.++|+++|+++|+|..... + .+.++-+
T Consensus 134 --~~~~~~~~--------~~~t~li~~Etp-sNP~l~v~D----i~~i~~iA~~~g~~~vvDnT~a~----t-P~~~~Pl 193 (421)
T d2ctza1 134 --PEEFLALT--------DEKTRAWWVESI-GNPALNIPD----LEALAQAAREKGVALIVDNTFGM----G-GYLLRPL 193 (421)
T ss_dssp --HHHHHHHC--------CTTEEEEEEESS-CTTTCCCCC----HHHHHHHHHHHTCEEEEECGGGG----G-GTSCCGG
T ss_pred --cchhcccc--------CCCceEEEEcCC-CcceeEecc----hHHHHHHHHhcCCceEecccccc----c-ceecccc
Confidence 01222223 357889999986 555555555 89999999999999999998731 1 1223333
Q ss_pred CCCcceee--ehhccCC-CccchheeEeC
Q 005009 679 GCVPDIAC--YGKLLTG-GVIPLAATLAT 704 (719)
Q Consensus 679 gv~PDIvt--lgK~Lgg-G~~Plsavl~~ 704 (719)
..-.|||+ ..|=++| |=.=.|+|+.+
T Consensus 194 ~~GaDiVvhS~TKyl~GHsD~l~G~vv~~ 222 (421)
T d2ctza1 194 AWGAALVTHSLTKWVGGHGAVIAGAIVDG 222 (421)
T ss_dssp GGTCSEEEEETTTTTTCSSCCCCEEEEEC
T ss_pred ccCCcEEEEechhhccCCCCeEEEEEEcC
Confidence 34579885 6899987 42333445543
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=95.87 E-value=0.034 Score=56.43 Aligned_cols=88 Identities=22% Similarity=0.304 Sum_probs=56.8
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCccee---eehhccC-CC
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIA---CYGKLLT-GG 694 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIv---tlgK~Lg-gG 694 (719)
+..++++-+- ..-.|.+. +.+-++.+.+.|+ +++++|+||...-|..-. .........+.++ +|+|.+| .|
T Consensus 144 ~~~~v~~~~p-nNPtG~~~-~~~~~~~~~~~~~-~~~~~iidd~~~~f~~~~--~~~~~~~~~~~~iv~~S~SK~~~laG 218 (354)
T d1fg7a_ 144 GVKVVYVCSP-NNPTGQLI-NPQDFRTLLELTR-GKAIVVADEAYIEFCPQA--SLAGWLAEYPHLAILRTLSKAFALAG 218 (354)
T ss_dssp TEEEEEEESS-CTTTCCCC-CHHHHHHHHHHHT-TTCEEEEECTTGGGSGGG--CSGGGTTTCTTEEEEEESSSTTCCGG
T ss_pred ccceeeccCC-CccceeEe-eeccccccccccc-ccccccccccchhhcccc--ccchhhcccccceEEeCCccccCCCc
Confidence 4445555443 45566655 5677888877775 677788888876563221 1111222334333 7999998 78
Q ss_pred ccchheeEeCHHHHhhhc
Q 005009 695 VIPLAATLATNAVFDSFV 712 (719)
Q Consensus 695 ~~Plsavl~~~~i~~~~~ 712 (719)
+-+|.+++++++++.+.
T Consensus 219 -lRiGy~i~~~~~i~~l~ 235 (354)
T d1fg7a_ 219 -LRCGFTLANEEVINLLM 235 (354)
T ss_dssp -GCCEEEEECHHHHHHHH
T ss_pred -cccccccccchhhhhhh
Confidence 79999999999988764
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.82 E-value=0.0036 Score=56.25 Aligned_cols=38 Identities=16% Similarity=0.114 Sum_probs=34.6
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KP 79 (719)
|.|.+.|+|. +|+||||+...|++.|. ++|++|+..|.
T Consensus 1 m~Pvi~itG~-~GSGKTTL~~~L~~~l~-----~~g~~v~v~~~ 38 (170)
T d1np6a_ 1 MIPLLAFAAW-SGTGKTTLLKKLIPALC-----ARGIRPGLIKH 38 (170)
T ss_dssp CCCEEEEECC-TTSCHHHHHHHHHHHHH-----HTTCCEEEEEE
T ss_pred CCCEEEEEcC-CCCCHHHHHHHHHHHHH-----HCCCeEEEecc
Confidence 5688999999 69999999999999994 88999999995
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=95.82 E-value=0.047 Score=56.10 Aligned_cols=87 Identities=16% Similarity=-0.087 Sum_probs=55.1
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccc---c--ccCC-CcceeeehhccC
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA---D--LLGC-VPDIACYGKLLT 692 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~---e--~~gv-~PDIvtlgK~Lg 692 (719)
+...+++-.- +.=.|... +.+.+++|.++|++|++++|.||+..+|.-.+..... . ..+. .--+..++|..+
T Consensus 169 ~~~i~~~~~p-~NPTG~~~-s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~ 246 (394)
T d2ay1a_ 169 GDMVLLHGCC-HNPTGANL-TLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFG 246 (394)
T ss_dssp TCEEEEESSS-CTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTT
T ss_pred CcEEEEeCCC-CCCCCCCC-CHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhhhccccccccccccccc
Confidence 3445555433 55567654 7999999999999999999999999998554432111 0 1111 112236788876
Q ss_pred C-CccchheeEeCHHHH
Q 005009 693 G-GVIPLAATLATNAVF 708 (719)
Q Consensus 693 g-G~~Plsavl~~~~i~ 708 (719)
. | .-+|.+++...+.
T Consensus 247 ~~G-~R~G~~~~~~~~~ 262 (394)
T d2ay1a_ 247 IYR-ERTGCLLALCADA 262 (394)
T ss_dssp CGG-GCEEEEEEECSSH
T ss_pred CCc-ccccchhhchhHH
Confidence 4 5 4666677665443
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=95.81 E-value=0.13 Score=52.43 Aligned_cols=219 Identities=13% Similarity=0.024 Sum_probs=123.8
Q ss_pred eeeeccccccccCCCCCCCHHHHHHHHHhhhhccccc-CCCCCChHHHHHHHHHHhccCCCC-C-CeEEEeCChHHHHHH
Q 005009 400 QQFDACASWWTQGPDATLQIELARDMGYTAARFGHVM-FPENVYEPALECAELLLQGVGKGW-A-SRAYFSDNGSTAIEI 476 (719)
Q Consensus 400 ~yLD~~sg~~~~~lGH~~hP~V~~Av~~q~~~~~~~~-~~~~~~~~~~~Lae~L~~~~~~~~-~-~rv~f~~SGsEA~E~ 476 (719)
..||+..|.- .+.-++.+.+|+.+.+++..+.. ......+....+|+.+.+..+-.. - +.++.++++++|...
T Consensus 27 ~~i~l~~G~P----d~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~~ 102 (382)
T d1u08a_ 27 QAINLSQGFP----DFDGPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYA 102 (382)
T ss_dssp TCEECCCSSC----SSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHH
T ss_pred CCEEccCCCC----CCCCCHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHHHhCCCCCCCceEEeccchHHHHHH
Confidence 5677766543 23326788999998887633211 122234556667888876544221 1 359999999999999
Q ss_pred HHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCccccc
Q 005009 477 ALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMY 556 (719)
Q Consensus 477 AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 556 (719)
+++... .. ...|+.-+-+|...... +...+..
T Consensus 103 ~~~~l~-----~~----------------gd~vl~~~p~y~~~~~~-~~~~g~~-------------------------- 134 (382)
T d1u08a_ 103 AITALV-----RN----------------GDEVICFDPSYDSYAPA-IALSGGI-------------------------- 134 (382)
T ss_dssp HHHHHC-----CT----------------TCEEEEEESCCTTHHHH-HHHTTCE--------------------------
T ss_pred HHhhcc-----cc----------------cceEEEecccccchhhh-hhhcccc--------------------------
Confidence 988761 11 23577777777663222 1111110
Q ss_pred CcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccc
Q 005009 557 NSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMH 636 (719)
Q Consensus 557 ~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~ 636 (719)
...++.++ +. ...| .+.++..+. ....+.++.-|- .-.|.+
T Consensus 135 --~~~~~~~~--------------~~------~~~d--------~~~l~~~~~-------~~~~~i~l~~P~--NPtG~v 175 (382)
T d1u08a_ 135 --VKRMALQP--------------PH------FRVD--------WQEFAALLS-------ERTRLVILNTPH--NPSATV 175 (382)
T ss_dssp --EEEEECCT--------------TT------CCCC--------HHHHHHHCC-------TTEEEEEEESSC--TTTCCC
T ss_pred --ceeccccc--------------cc------ccCC--------HHHHhhhhc-------cCccEEEECCCC--cccccc
Confidence 00001110 00 0011 234444432 223345555663 444554
Q ss_pred cCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcccccc-ccCCCcc----eeeehhccC-CCccchheeEeCHHHHhh
Q 005009 637 MVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTAD-LLGCVPD----IACYGKLLT-GGVIPLAATLATNAVFDS 710 (719)
Q Consensus 637 ~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e-~~gv~PD----IvtlgK~Lg-gG~~Plsavl~~~~i~~~ 710 (719)
. +.+.++++.++|+++++.+|.||+..=+-..+...... .....+| +..++|.++ .| +=+|.+++.+++.+.
T Consensus 176 ~-~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~pG-~RiG~~v~~~~~~~~ 253 (382)
T d1u08a_ 176 W-QQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTG-WKVGYCVAPAPISAE 253 (382)
T ss_dssp C-CHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGG-GCCEEEECCHHHHHH
T ss_pred c-ccccchhhhhhhccccceeeeecchhhccccccccccccccccccCcEEEEeeccccccCCc-ccchhhhccchhHHH
Confidence 4 67889999999999999999999986432222211110 0101122 236899997 67 688999999988776
Q ss_pred h
Q 005009 711 F 711 (719)
Q Consensus 711 ~ 711 (719)
+
T Consensus 254 ~ 254 (382)
T d1u08a_ 254 I 254 (382)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=95.68 E-value=0.13 Score=51.54 Aligned_cols=81 Identities=12% Similarity=0.169 Sum_probs=52.2
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcce-e--eehhccC-CCcc
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDI-A--CYGKLLT-GGVI 696 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDI-v--tlgK~Lg-gG~~ 696 (719)
..++.-| +.-.|.+.+ . +.|.+ +.++++++|.||+...+.-....... ...+.+ + +++|..+ .| +
T Consensus 141 ~l~l~nP--~NPtG~~~s-~---~~l~~-~~~~~~~ii~Dd~~~~~~~~~~~~~~---~~~~~~i~~~S~SK~~~~~G-~ 209 (334)
T d2f8ja1 141 VVFIPNP--NNPTGHVFE-R---EEIER-ILKTGAFVALDEAYYEFHGESYVDFL---KKYENLAVIRTFSKAFSLAA-Q 209 (334)
T ss_dssp EEEEESS--CTTTCCCCC-H---HHHHH-HHTTTCEEEEECTTGGGTCCCCGGGG---GTCSSEEEEEESTTTSSCTT-T
T ss_pred EEEeccc--ccccceeec-H---HHhhc-cccceeEEeecccchhhccccccccc---ccCceEEEEecCccccchhh-h
Confidence 4566678 455566665 3 34444 45789999999998654322222211 112222 2 7899987 68 6
Q ss_pred chheeEeCHHHHhhhc
Q 005009 697 PLAATLATNAVFDSFV 712 (719)
Q Consensus 697 Plsavl~~~~i~~~~~ 712 (719)
-+|.+++++++.+.+.
T Consensus 210 R~G~~~~~~~~i~~l~ 225 (334)
T d2f8ja1 210 RVGYVVASEKFIDAYN 225 (334)
T ss_dssp CEEEEEECHHHHHHHH
T ss_pred hhhhcccchHHHHHHH
Confidence 9999999999988764
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=95.62 E-value=0.018 Score=60.29 Aligned_cols=83 Identities=10% Similarity=0.102 Sum_probs=54.4
Q ss_pred CcEEEEEEccccccCCccccCCHHHHHHHHHHHHhc--CCcEEEeccccCccccCccccccccCCCcceee--ehhccCC
Q 005009 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNR--KIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTG 693 (719)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~--gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvt--lgK~Lgg 693 (719)
++..+|++|.. ..-...+.. ++++.++|+++ |+++|+|..... .+.++-+..-.|||+ +.|-++|
T Consensus 142 ~~t~~i~~Etp-sNP~l~v~D----i~~i~~~a~~~~~g~~~vVDnT~at------P~~~~Pl~~GaDivvhS~TKy~~G 210 (391)
T d1cl1a_ 142 PNTKIVFLESP-GSITMEVHD----VPAIVAAVRSVVPDAIIMIDNTWAA------GVLFKALDFGIDVSIQAATKYLVG 210 (391)
T ss_dssp TTEEEEEEESS-CTTTCCCCC----HHHHHHHHHHHCTTCEEEEECTTTT------TTSSCGGGGTCSEEEEETTTTTTC
T ss_pred cccceeeeccc-Ccccccccc----cHHHHHHHHhccCCcEEEEeccccc------hhhhcccccccceEEeecchhccc
Confidence 56889999986 333333333 78888999764 999999998853 233333333468884 6899987
Q ss_pred -CccchheeEeCHHHHhhh
Q 005009 694 -GVIPLAATLATNAVFDSF 711 (719)
Q Consensus 694 -G~~Plsavl~~~~i~~~~ 711 (719)
|=.=.|++++++++...+
T Consensus 211 hsdvlgG~vv~~~~~~~~~ 229 (391)
T d1cl1a_ 211 HSDAMIGTAVCNARCWEQL 229 (391)
T ss_dssp SSSCCCEEEEECTTTHHHH
T ss_pred cccccccceeccccccccc
Confidence 323445667777665543
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.38 E-value=0.0061 Score=55.37 Aligned_cols=36 Identities=14% Similarity=0.097 Sum_probs=33.2
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
|+.+-|+|. +|+||||+...|++.|. ++|++|+..|
T Consensus 1 Mkii~I~G~-~gSGKTTli~~l~~~L~-----~~g~~v~vik 36 (165)
T d1xjca_ 1 MNVWQVVGY-KHSGKTTLMEKWVAAAV-----REGWRVGTVK 36 (165)
T ss_dssp CCEEEEECC-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CcEEEEEeC-CCCCHHHHHHHHHHHHH-----hCCCeEEEEE
Confidence 678889997 69999999999999994 8899999999
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.28 E-value=0.07 Score=55.71 Aligned_cols=83 Identities=13% Similarity=0.229 Sum_probs=51.7
Q ss_pred CcEEEEEEccccccCCccccCCHHHHHHHHHHHH----hcCCcEEEeccccCccccCccccccccCCCcceee--ehhcc
Q 005009 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQ----NRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLL 691 (719)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~----k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvt--lgK~L 691 (719)
.+..+|++|.. +.--..+++ ++++.++|+ ++|+++|+|....+ .+.++-+..-.|||+ +-|-+
T Consensus 137 ~~t~lv~~Esp--sNP~l~v~D---i~~ia~~a~~~~~~~g~~lvVDnT~at------P~~~~Pl~~GADiVvhS~TKyi 205 (393)
T d1n8pa_ 137 ENTKLVWIETP--TNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLS------PYISNPLNFGADIVVHSATKYI 205 (393)
T ss_dssp SSEEEEEECSS--CTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTH------HHHCCGGGGTCSEEEEETTTTT
T ss_pred hhcceeEecCc--chhhhhccc---hhhhhhhhhhhcccCCceEEEecCccC------cccCCchhhCCCEEEEcccccc
Confidence 47789999986 433333333 677777777 78999999998742 233333333469885 68999
Q ss_pred CC-CccchheeEeC-HHHHhhh
Q 005009 692 TG-GVIPLAATLAT-NAVFDSF 711 (719)
Q Consensus 692 gg-G~~Plsavl~~-~~i~~~~ 711 (719)
+| |=+=.|+++.+ +++++.+
T Consensus 206 ~GhsDv~~G~v~~~~~~~~~~l 227 (393)
T d1n8pa_ 206 NGHSDVVLGVLATNNKPLYERL 227 (393)
T ss_dssp TCSSCCCCEEEEESCHHHHHHH
T ss_pred CCCCccccceeeecchhHHHHH
Confidence 87 31223344444 4565544
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=95.24 E-value=0.2 Score=51.26 Aligned_cols=87 Identities=16% Similarity=0.038 Sum_probs=54.3
Q ss_pred CcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccc--c----ccCCCcceeeehhcc
Q 005009 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTA--D----LLGCVPDIACYGKLL 691 (719)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~--e----~~gv~PDIvtlgK~L 691 (719)
..+.-++.-| +.=.|.+ .+.+.+++|.++|++|++++|.||+..+|...+..... . ......-+..++|.+
T Consensus 172 ~~~~i~~~~P--~NPTG~~-~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~ 248 (396)
T d2q7wa1 172 GDVVLFHGCC--HNPTGID-PTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNF 248 (396)
T ss_dssp TCEEEEECSS--CTTTCCC-CCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTT
T ss_pred CcEEEEecCC--cCCcCee-cCHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhhcccccccccccccc
Confidence 3444444445 4445654 47999999999999999999999999988543332111 1 111122233578987
Q ss_pred CC-CccchheeEeCHHHH
Q 005009 692 TG-GVIPLAATLATNAVF 708 (719)
Q Consensus 692 gg-G~~Plsavl~~~~i~ 708 (719)
+- | .=+|.+++...+.
T Consensus 249 ~~~G-~R~G~~~~~~~~~ 265 (396)
T d2q7wa1 249 GLYN-ERVGACTLVAADS 265 (396)
T ss_dssp TCGG-GCCEEEEEECSSH
T ss_pred cccC-CCccccccchhHH
Confidence 63 5 4566677765443
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=95.13 E-value=0.0061 Score=61.78 Aligned_cols=71 Identities=8% Similarity=-0.048 Sum_probs=46.1
Q ss_pred EEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCCccchhe
Q 005009 621 GALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAA 700 (719)
Q Consensus 621 AAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG~~Plsa 700 (719)
..+.++.+ . |...+ ...+.++|+++|+++|+|=||+ +| +.-.-++.+ .-|+.+++|.++.+ |.++
T Consensus 141 ~~~~~~~~-t---g~~~~----~~~i~~~~~~~g~l~ivDavqs-~g--~~~id~~~~--~vd~~~~~~~k~~~--~~~~ 205 (360)
T d1w23a_ 141 NDAYLHIT-S---NNTIY----GTQYQNFPEINHAPLIADMSSD-IL--SRPLKVNQF--GMIYAGAQKNLGPS--GVTV 205 (360)
T ss_dssp TEEEEEEE-S---EETTT----TEECSSCCCCCSSCEEEECTTT-TT--SSCCCGGGC--SEEEEETTTTTSCT--TCEE
T ss_pred ccceeEec-C---Ccccc----ceeeeeccccceeeEEeecccc-cc--ccccccccc--cceEEeeccccccC--Ccce
Confidence 34566665 3 34444 5577889999999999999997 32 223344444 45889999988765 3334
Q ss_pred eEeCHH
Q 005009 701 TLATNA 706 (719)
Q Consensus 701 vl~~~~ 706 (719)
++..+.
T Consensus 206 ~~~~~~ 211 (360)
T d1w23a_ 206 VIVKKD 211 (360)
T ss_dssp EEEEHH
T ss_pred eeEech
Confidence 444333
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=94.94 E-value=0.22 Score=51.10 Aligned_cols=88 Identities=16% Similarity=0.124 Sum_probs=57.3
Q ss_pred cEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc----cccccCCCcce---eeehhcc
Q 005009 619 CIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET----TADLLGCVPDI---ACYGKLL 691 (719)
Q Consensus 619 ~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~----a~e~~gv~PDI---vtlgK~L 691 (719)
+..++|+-.= +.=.|.+. +.+-+++|.++|++|++++|.||+..+|...+... ........+.. ..++|..
T Consensus 175 ~~~~iii~~p-~NPTG~~~-s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~ 252 (401)
T d7aata_ 175 KSIILLHACA-HNPTGVDP-RQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNM 252 (401)
T ss_dssp TCEEEEESSS-CTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTS
T ss_pred ceEEEEecCC-CCCccccC-CHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhcccceeEeccccc
Confidence 3344444432 45556654 79999999999999999999999999885544311 11111222232 3678988
Q ss_pred C-CCccchheeEeCHHHHh
Q 005009 692 T-GGVIPLAATLATNAVFD 709 (719)
Q Consensus 692 g-gG~~Plsavl~~~~i~~ 709 (719)
+ .| .-+|.+++..++.+
T Consensus 253 ~~~G-~RiG~~~~~~~~~~ 270 (401)
T d7aata_ 253 GLYG-ERAGAFTVICRDAE 270 (401)
T ss_dssp CCGG-GCEEEEEEECSSHH
T ss_pred eeec-cccceeecchHHHH
Confidence 7 46 57787887655444
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=94.93 E-value=0.077 Score=56.24 Aligned_cols=208 Identities=11% Similarity=-0.074 Sum_probs=107.2
Q ss_pred CCCCHHHHHHHHHhhhhcccccCCCC--CChHHHHHHHHHHhccCCC--CCC--eEEEeCChHHHHHHHHHHHHHHhhcc
Q 005009 415 ATLQIELARDMGYTAARFGHVMFPEN--VYEPALECAELLLQGVGKG--WAS--RAYFSDNGSTAIEIALKMAFRKFSFD 488 (719)
Q Consensus 415 H~~hP~V~~Av~~q~~~~~~~~~~~~--~~~~~~~Lae~L~~~~~~~--~~~--rv~f~~SGsEA~E~AlKlA~r~~~~~ 488 (719)
+- +|++.+.+.+.+++-.... -.+ .++...++.+.|+++++.+ ... --.|+.+|||||..|+..|++.+..+
T Consensus 65 ~~-~~~~~~l~~~~~~~N~~~~-~~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~ 142 (450)
T d1pmma_ 65 WD-DENVHKLMDLSINKNWIDK-EEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKR 142 (450)
T ss_dssp CC-CHHHHHHHHHTTTCBTTCT-TTSHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CHHHHHHHHHHHhcCCCCc-ccCccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHHHHHHH
Confidence 44 7888888888776522211 001 1334445555666665421 111 24789999999999999995444322
Q ss_pred ccccccccCCCccccCcceEEEEEeCCcccCccccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecC-cch
Q 005009 489 HEVLVDFLGKDTTEKCIELKVLALKGSYHGDTLGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSL-PEW 567 (719)
Q Consensus 489 ~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-P~~ 567 (719)
.... + ...+..+++. +..|-+..-+....|-. ...++. |..
T Consensus 143 ~~~~----g-----~~~~~~~~~~-~~~H~s~~Kaa~~~gi~----------------------------~~~v~~~~~~ 184 (450)
T d1pmma_ 143 MEAA----G-----KPTDKPNLVC-GPVQICWHKFARYWDVE----------------------------LREIPMRPGQ 184 (450)
T ss_dssp HHHH----T-----CCCSCCEEEE-SSCCHHHHHHHHHTTCE----------------------------EEECCCBTTB
T ss_pred hhhc----C-----CCCCCceEEe-cccHHHHHHHHHHcCCC----------------------------ceEeeecCCC
Confidence 1000 0 0122334443 45576544333333211 011111 101
Q ss_pred hhhcccccccccccCccchhhcccCchhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHH
Q 005009 568 LYSKIVEHKDITFCSRDEIFYEERDSSDLASIYSSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILV 647 (719)
Q Consensus 568 ~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr 647 (719)
+ .-| .+.+++.++ ++.++|++=-. ....|.+.| ++++.
T Consensus 185 ~---------------------~~d--------~~~L~~~i~--------~~t~~Vv~t~g-tt~tG~~dp----v~~i~ 222 (450)
T d1pmma_ 185 L---------------------FMD--------PKRMIEACD--------ENTIGVVPTFG-VTYTGNYEF----PQPLH 222 (450)
T ss_dssp C---------------------SCC--------HHHHHHHCC--------TTEEEEECBBS-CTTTCBBCC----HHHHH
T ss_pred C---------------------cCc--------HHHHHHHhh--------hCceEEEeeee-eccCCCccc----cchhh
Confidence 1 001 255666665 24455554332 444566665 44444
Q ss_pred HH------HHhcCCcEEEeccccCccccCccccccc----cCC-Ccceeee-hhccCCCccchheeEeCHHH
Q 005009 648 KE------CQNRKIPVIFDEVFTGFWRLGVETTADL----LGC-VPDIACY-GKLLTGGVIPLAATLATNAV 707 (719)
Q Consensus 648 ~L------c~k~gilLI~DEVqTGfGRtG~~~a~e~----~gv-~PDIvtl-gK~LggG~~Plsavl~~~~i 707 (719)
++ |+++|+.+.+|=++.|+-- .|...+ +++ ..|.+++ +--.+++....|+++.++.-
T Consensus 223 ~i~~~~~~a~~~~i~lHVDAA~gG~~~---p~~~~~~~~~~~~~~aDSi~~s~HK~~~~p~g~g~l~~r~~~ 291 (450)
T d1pmma_ 223 DALDKFQADTGIDIDMHIDAASGGFLA---PFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEE 291 (450)
T ss_dssp HHHHHHHHHHCCCCCEEEECTTGGGTH---HHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGG
T ss_pred HHHHHHHHHhccCcEEEeehhhcccee---eeechhhhhhhcccceeEeecChhhccCCCCCeeEEEecChh
Confidence 44 5779999999999987511 111111 233 4787754 44444444677889988653
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=94.91 E-value=0.11 Score=54.04 Aligned_cols=82 Identities=11% Similarity=0.084 Sum_probs=52.2
Q ss_pred CcEEEEEEccccccCCccccCCHHHHHHHHHHHH-hcCCcEEEeccccCccccCccccccccCCCcceee--ehhccCC-
Q 005009 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQ-NRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTG- 693 (719)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~-k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvt--lgK~Lgg- 693 (719)
++..+|++|.. -.-..-+.. ++++.++++ ++|+++|+|...+.- ..++-+..-.|||+ ..|-++|
T Consensus 143 ~~t~lv~~Etp-~NP~l~v~D----i~~~~~~~~~~~g~~vvvDnT~atP------~~~~Pl~~GaDiVvhS~TKy~~Gh 211 (394)
T d1e5ea_ 143 PNTKIVYFETP-ANPTLKIID----MERVCKDAHSQEGVLVIADNTFCSP------MITNPVDFGVDVVVHSATKYINGH 211 (394)
T ss_dssp TTEEEEEEESS-CTTTCCCCC----HHHHHHHHHTSTTCEEEEECTTTCT------TTCCGGGGTCSEEEEETTTTTTCS
T ss_pred ccccEEEEecc-CCcceeeeh----hhhhhhccccccCeEEEecCcccCc------ccCCchhcCCCEEEechhhhcCCC
Confidence 45678999986 333333333 566666555 578999999987532 22232333458885 7899987
Q ss_pred CccchheeEeCHHHHhh
Q 005009 694 GVIPLAATLATNAVFDS 710 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~ 710 (719)
|=.-.|+++++.+....
T Consensus 212 sDv~~G~v~~~~~~~~~ 228 (394)
T d1e5ea_ 212 TDVVAGLICGKADLLQQ 228 (394)
T ss_dssp SCCCCEEEEECHHHHHH
T ss_pred cccccccccchhhHHHH
Confidence 43445668888776653
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.86 E-value=0.039 Score=56.32 Aligned_cols=36 Identities=8% Similarity=0.123 Sum_probs=31.4
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
...|=|||. .|+|||++.-.|++.+. .+|++|+..-
T Consensus 54 ~~~IgitG~-pGaGKSTLi~~l~~~~~-----~~g~~vavla 89 (327)
T d2p67a1 54 TLRLGVTGT-PGAGKSTFLEAFGMLLI-----REGLKVAVIA 89 (327)
T ss_dssp SEEEEEEEC-TTSCHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred ceEEEeeCC-CCCCHHHHHHHHHHHHH-----hcCCceeeec
Confidence 447999998 99999999999999995 7799987765
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=94.73 E-value=0.19 Score=51.73 Aligned_cols=83 Identities=12% Similarity=0.093 Sum_probs=53.0
Q ss_pred cEEEEEE-ccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCcc---cccc-ccCC-Cccee--eehhc
Q 005009 619 CIGALII-EPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVE---TTAD-LLGC-VPDIA--CYGKL 690 (719)
Q Consensus 619 ~iAAvIv-EPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~---~a~e-~~gv-~PDIv--tlgK~ 690 (719)
+...+|+ -| +.=.|.+ .+.+-+++|.++|++||+++|.|||+..|..-+.- +... .... ...++ .++|.
T Consensus 183 ~~~~il~~~P--~NPTG~v-~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~ 259 (412)
T d1ajsa_ 183 FSIFVLHACA--HNPTGTD-PTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKN 259 (412)
T ss_dssp TCEEEEESSS--CTTTCCC-CCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTT
T ss_pred CcEEEEecCC--CCCcCCC-CCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhhhccccccccccccc
Confidence 3344554 45 4555654 47999999999999999999999999988554431 1111 1111 22232 57888
Q ss_pred cCC-CccchheeEeCH
Q 005009 691 LTG-GVIPLAATLATN 705 (719)
Q Consensus 691 Lgg-G~~Plsavl~~~ 705 (719)
.+. | .=+|.+++..
T Consensus 260 ~~~~G-~R~G~~~~~~ 274 (412)
T d1ajsa_ 260 FGLYN-ERVGNLTVVA 274 (412)
T ss_dssp SCCGG-GCEEEEEEEC
T ss_pred ccCCC-CCccccccch
Confidence 874 4 4566666654
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=94.65 E-value=0.15 Score=52.77 Aligned_cols=87 Identities=13% Similarity=0.115 Sum_probs=58.8
Q ss_pred CcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc-c------ccccCCCccee---ee
Q 005009 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET-T------ADLLGCVPDIA---CY 687 (719)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~-a------~e~~gv~PDIv---tl 687 (719)
....++++-+= +.=.|.+. +.+.+++|.++|++|++++|.||+..+|..-|... . .+..+..+..+ .+
T Consensus 175 ~~~~~i~i~~P-~NPTG~~~-s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 252 (412)
T d1yaaa_ 175 EGSIFVLHSCA-HNPTGLDP-TSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSF 252 (412)
T ss_dssp TTCEEEEECSS-CTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEEC
T ss_pred CceEEEEecCC-CCCccccC-CHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhccccCCCeEEEEec
Confidence 34444555432 55567654 79999999999999999999999999885544311 1 11223333333 68
Q ss_pred hhccC-CCccchheeEeCHHH
Q 005009 688 GKLLT-GGVIPLAATLATNAV 707 (719)
Q Consensus 688 gK~Lg-gG~~Plsavl~~~~i 707 (719)
+|.++ .| .-+|.+++..++
T Consensus 253 SK~~~~~G-~RiG~~~~~~~~ 272 (412)
T d1yaaa_ 253 AKNAGMYG-ERVGCFHLALTK 272 (412)
T ss_dssp TTTSCCGG-GCEEEEEEECCS
T ss_pred CCccccCc-CceEEEEEchhh
Confidence 99998 47 688888877543
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=94.60 E-value=0.15 Score=54.39 Aligned_cols=88 Identities=15% Similarity=0.106 Sum_probs=53.7
Q ss_pred CCCCHHHHHHHHHhhhhcccccC---CCCCChHHHHHHHHHHhccCCCCCCeEEE-eCChHHHHHHHHHHHHHHhhcccc
Q 005009 415 ATLQIELARDMGYTAARFGHVMF---PENVYEPALECAELLLQGVGKGWASRAYF-SDNGSTAIEIALKMAFRKFSFDHE 490 (719)
Q Consensus 415 H~~hP~V~~Av~~q~~~~~~~~~---~~~~~~~~~~Lae~L~~~~~~~~~~rv~f-~~SGsEA~E~AlKlA~r~~~~~~G 490 (719)
|= +|.+++.+......|+..+. ....-+..-++-..+++++| ++-+-. ...|+.|.-.|+.|| +.+++++|
T Consensus 76 hy-~P~v~~~~~~~~TaYTPYQPaEiSQG~LQalfEfQtmi~eLTG---MdvaNaS~yDGatA~aeA~~ma-~r~~~~~~ 150 (471)
T d1wyub1 76 KY-NPKLHEEAARLFADLHPYQDPRTAQGALRLMWELGEYLKALTG---MDAITLEPAAGAHGELTGILII-RAYHEDRG 150 (471)
T ss_dssp CC-CCHHHHHHHHTTSSCCTTSCGGGCHHHHHHHHHHHHHHHHHHT---CSEEECCCSSHHHHHHHHHHHH-HHHHHHTT
T ss_pred cc-CcchhhhHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHhC---CCccccccchHHHHHHHHHHHH-HHHhhhcc
Confidence 55 78998888753322222221 00112345688889999998 555433 358999999999999 56666554
Q ss_pred ccccccCCCccccCcceEEEEEeCCcccC
Q 005009 491 VLVDFLGKDTTEKCIELKVLALKGSYHGD 519 (719)
Q Consensus 491 ~~~~~~~~~~~~~~~r~kII~~~~syHG~ 519 (719)
. ..+..++.....+|..
T Consensus 151 ~------------~~~~~~~~~~~~~~~~ 167 (471)
T d1wyub1 151 E------------GRTRRVVLVPDSAHGS 167 (471)
T ss_dssp C------------TTTCCEEEEETTSCTH
T ss_pred c------------ccccccccCCcccccc
Confidence 3 2334455565656653
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=94.14 E-value=0.059 Score=55.01 Aligned_cols=82 Identities=16% Similarity=0.128 Sum_probs=53.8
Q ss_pred CcEEEEEEccccccCCccccCCHHHHHHHHHHH-HhcCCcEEEeccccCccccCccccccccCCCcceee--ehhccCC-
Q 005009 618 GCIGALIIEPVVHAAGGMHMVDPLFQRILVKEC-QNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIAC--YGKLLTG- 693 (719)
Q Consensus 618 ~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc-~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvt--lgK~Lgg- 693 (719)
++...|++|.. -.-...++. ++.+.+++ +++|+++|+|...++ .+.++-+..-.|||+ +.|-++|
T Consensus 82 ~~t~~i~~Es~-~np~~~v~d----~~~~~~~~a~~~~~~~vVDnT~at------p~~~~pl~~GaDiVv~S~TKy~~Gh 150 (331)
T d1pffa_ 82 PNTRIVYFETP-ANPTLKVID----IEDAVKQARKQKDILVIVDNTFAS------PILTNPLDLGVDIVVHSATKYINGH 150 (331)
T ss_dssp TTEEEEEEESS-CTTTCCCCC----HHHHHHHHTTSSSCEEEEECTTTH------HHHCCGGGGTCSEEEEETTTTTSSS
T ss_pred cccceeeeecc-ccccccccc----chhhhhhhhcccCceEEeeccccc------cccccccccCCCEEEecchhhcCCC
Confidence 46778999986 444444444 66667765 678999999998853 233443334469885 6799987
Q ss_pred CccchheeEeCHHHHhh
Q 005009 694 GVIPLAATLATNAVFDS 710 (719)
Q Consensus 694 G~~Plsavl~~~~i~~~ 710 (719)
|=.=.|+++++.+.+..
T Consensus 151 ~d~~~G~v~~~~~~~~~ 167 (331)
T d1pffa_ 151 TDVVAGLVCSRADIIAK 167 (331)
T ss_dssp SSCCCEEEEECHHHHHH
T ss_pred Cccccccccccccchhh
Confidence 43445667777655543
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=93.91 E-value=0.19 Score=51.57 Aligned_cols=75 Identities=12% Similarity=0.124 Sum_probs=48.6
Q ss_pred ccCCccccCCHHHHHHHHHHHHhcCCcEEEeccccCccccCccc--cc-cccCCCcce---eeehhccCC-CccchheeE
Q 005009 630 HAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFTGFWRLGVET--TA-DLLGCVPDI---ACYGKLLTG-GVIPLAATL 702 (719)
Q Consensus 630 qg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~--a~-e~~gv~PDI---vtlgK~Lgg-G~~Plsavl 702 (719)
+.=.|.. .+.+-+++|.++|++||+++|.||+..+|-..+... .. ...+..... ..++|.++- | .=+|.++
T Consensus 183 ~NPTG~~-~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G-~RiG~~~ 260 (397)
T d3tata_ 183 HNPTGAD-LTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYG-ERVGGLS 260 (397)
T ss_dssp CSSSCCC-CCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHHTBTT-TCCBCCE
T ss_pred CCCCCee-CCHHHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcCCceEEEecCcccccccC-ccccccc
Confidence 4445654 489999999999999999999999999874333211 11 111222333 368998764 5 4566666
Q ss_pred eCHH
Q 005009 703 ATNA 706 (719)
Q Consensus 703 ~~~~ 706 (719)
+...
T Consensus 261 ~~~~ 264 (397)
T d3tata_ 261 VMCE 264 (397)
T ss_dssp EECS
T ss_pred cchh
Confidence 5543
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=93.22 E-value=0.0095 Score=60.65 Aligned_cols=56 Identities=11% Similarity=-0.071 Sum_probs=37.0
Q ss_pred HHHHHHHHhcCCcEEEeccccCccccCccccccccCCCcceeeehhccCCCccchheeEeCHH
Q 005009 644 RILVKECQNRKIPVIFDEVFTGFWRLGVETTADLLGCVPDIACYGKLLTGGVIPLAATLATNA 706 (719)
Q Consensus 644 ~~Lr~Lc~k~gilLI~DEVqTGfGRtG~~~a~e~~gv~PDIvtlgK~LggG~~Plsavl~~~~ 706 (719)
+.+.++|++||+++|+|-|++.. +.-+-.+ .+.-|+.+..|.++.. |.++++...+
T Consensus 156 ~~i~~~~~~~~al~~vDavss~g---~~~id~~--~~di~~~s~~k~~~~~--~~~~~~~~~~ 211 (361)
T d2c0ra1 156 AQFKAFPDTGSVPLIGDMSSDIL---SRPFDLN--QFGLVYAGAQKNLGPS--GVTVVIVRED 211 (361)
T ss_dssp EECSSCCCCTTSCEEEECTTTTT---SSCCCGG--GCSEEEEETTTTTCCS--SCEEEEEEGG
T ss_pred ceEEEeeccCCceEEEEeecccc---ccccccc--cceeEEEecccccccc--cCcEEEEEhH
Confidence 35667899999999999999632 2223333 3456888888988743 4444444443
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=93.20 E-value=0.03 Score=48.97 Aligned_cols=24 Identities=13% Similarity=0.236 Sum_probs=22.5
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
+.|+|+|+ +||||||++..|++.|
T Consensus 3 k~I~l~G~-~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 3 RNIFLVGP-MGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CCEEEECC-TTSCHHHHHHHHHHHT
T ss_pred CeEEEECC-CCCCHHHHHHHHHHHh
Confidence 57999999 9999999999999998
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=93.05 E-value=0.038 Score=49.85 Aligned_cols=37 Identities=11% Similarity=-0.019 Sum_probs=31.6
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEcc
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLKP 79 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~KP 79 (719)
|+.+.|+|+ .|+||||++..|++.|. .+|+++..+++
T Consensus 1 mkiivi~G~-~GsGKTT~~~~La~~L~-----~~~~~~~~~~~ 37 (194)
T d1nksa_ 1 MKIGIVTGI-PGVGKSTVLAKVKEILD-----NQGINNKIINY 37 (194)
T ss_dssp CEEEEEEEC-TTSCHHHHHHHHHHHHH-----TTTCCEEEEEH
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHH-----HcCCCEEEEEC
Confidence 667899999 49999999999999994 67888877763
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=92.32 E-value=0.052 Score=48.18 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=23.1
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
++.|+|+|. .|+||||++..|++.|
T Consensus 4 ~~~I~i~G~-pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 4 LPNILLTGT-PGVGKTTLGKELASKS 28 (173)
T ss_dssp CCCEEEECS-TTSSHHHHHHHHHHHH
T ss_pred CCEEEEECC-CCCCHHHHHHHHHHHH
Confidence 678999999 6999999999999998
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.31 E-value=0.048 Score=48.59 Aligned_cols=35 Identities=14% Similarity=0.024 Sum_probs=29.8
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
+.++|+|. .|+|||++...+++.|. .+|.+|.++-
T Consensus 2 k~v~ItG~-~GtGKTtl~~~i~~~l~-----~~~~~v~~~~ 36 (189)
T d2i3ba1 2 RHVFLTGP-PGVGKTTLIHKASEVLK-----SSGVPVDGFY 36 (189)
T ss_dssp CCEEEESC-CSSCHHHHHHHHHHHHH-----HTTCCCEEEE
T ss_pred cEEEEECC-CCCcHHHHHHHHHHHHH-----HCCCEEEEEE
Confidence 56999998 99999999999999995 6677776554
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=91.68 E-value=0.062 Score=52.32 Aligned_cols=37 Identities=11% Similarity=0.041 Sum_probs=32.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhCCCcEEEEEEccC
Q 005009 253 GILVGDGRLGGISGTISAYESLKLRGYDVVAVVFEDH 289 (719)
Q Consensus 253 vilV~~~~~g~i~~~~~~~~~l~~~~~~v~gvi~N~~ 289 (719)
+++|.....-++..+...++.+...+.++.|+|+|++
T Consensus 186 ~vlV~~p~~~~~~~~~r~~~~l~~~~~~~~~iV~N~~ 222 (279)
T d1ihua2 186 VLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNS 222 (279)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHHHTTCCCCEEEEEEE
T ss_pred ceEeccccHhHHHHHHHHHHHHHhcCCCccEEEEcCC
Confidence 6778777777888888899999999999999999996
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=91.32 E-value=0.069 Score=47.45 Aligned_cols=24 Identities=17% Similarity=0.183 Sum_probs=22.0
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhh
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFL 63 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~ 63 (719)
.|+|+|. +|+|||||+..|.+.|.
T Consensus 8 ~I~l~G~-~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 8 TIFLTGY-MNSGKDAIARALQVTLN 31 (183)
T ss_dssp EEEEECS-TTSSHHHHHHHHHHHHH
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHh
Confidence 4889999 99999999999999994
|
| >d1vcoa2 c.37.1.10 (A:11-282) CTP synthase PyrG, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: CTP synthase PyrG, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=91.07 E-value=0.59 Score=45.58 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=32.2
Q ss_pred CCeEEEEc-CCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWS-ANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~g-t~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
++-+|||| .=++.||=++++.|.+.|+ .+|++|...|
T Consensus 2 ~kyifvtGGV~S~lGKGi~~asig~ll~-----~~g~~v~~~K 39 (272)
T d1vcoa2 2 RKYVFITGGVVSSLGKGILTSSLGALLR-----ARGYRVTAIK 39 (272)
T ss_dssp CEEEEEEECSSSCSCHHHHHHHHHHHHH-----TTTCCEEEEE
T ss_pred ceEEEEeCCcccccccHHHHHHHHHHHH-----hCCCceeEEe
Confidence 34678876 6789999999999999994 8899999999
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=90.78 E-value=0.11 Score=46.22 Aligned_cols=35 Identities=9% Similarity=0.080 Sum_probs=29.1
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
+.|+|+|+ .|+||||++..|.+.|. .+|.++..+.
T Consensus 2 kiI~i~G~-~GsGKsT~~~~L~~~l~-----~~~~~~~~~~ 36 (190)
T d1khta_ 2 KVVVVTGV-PGVGSTTSSQLAMDNLR-----KEGVNYKMVS 36 (190)
T ss_dssp CEEEEECC-TTSCHHHHHHHHHHHHH-----TTTCCCEEEE
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHHH-----HcCCCeEEEe
Confidence 57899999 89999999999999994 6677766543
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=90.66 E-value=0.072 Score=47.43 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=20.9
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHh
Q 005009 40 FQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 40 ~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
|+|+|. +||||||++..|.+.|
T Consensus 8 I~i~G~-~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 8 ILITGT-PGTGKTSMAEMIAAEL 29 (174)
T ss_dssp EEEECS-TTSSHHHHHHHHHHHS
T ss_pred EEEEeC-CCCCHHHHHHHHHHHh
Confidence 999999 9999999999999887
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=90.56 E-value=0.085 Score=46.77 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=23.4
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
+.+.|+|+|. +|+||||++..|++.|
T Consensus 2 ~~kiI~l~G~-~GsGKsTva~~L~~~l 27 (178)
T d1qhxa_ 2 TTRMIILNGG-SSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCCEEEEECC-TTSSHHHHHHHHHHHS
T ss_pred CCeEEEEECC-CCCCHHHHHHHHHHHc
Confidence 4567899998 9999999999999998
|
| >d2g0ta1 c.37.1.10 (A:1-338) Hypothetical protein TM0796 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein TM0796 species: Thermotoga maritima [TaxId: 2336]
Probab=90.26 E-value=0.57 Score=47.30 Aligned_cols=38 Identities=16% Similarity=0.194 Sum_probs=34.5
Q ss_pred CCCeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 36 SHPTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 36 ~~~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
+.+.+.+.||+..+||=+.++.|.++++ ++|+++.+.-
T Consensus 156 ~~~rvl~vGTDca~GK~tTal~l~~~l~-----~~G~~a~fia 193 (338)
T d2g0ta1 156 KIKVVGVFGTDCVVGKRTTAVQLWERAL-----EKGIKAGFLA 193 (338)
T ss_dssp CSEEEEEEESSSSSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CCcEEEEeccCccccHHHHHHHHHHHHH-----hCCCCeeEEE
Confidence 4688999999999999999999999995 8899998865
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=89.44 E-value=0.09 Score=46.73 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=22.9
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
.+.|.|+|+ +|+||||++..|...|
T Consensus 7 ~K~I~i~G~-~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 7 AKTVAILGG-ESSGKSVLVNKLAAVF 31 (192)
T ss_dssp CEEEEEECC-TTSHHHHHHHHHHHHT
T ss_pred ceEEEEECC-CCCCHHHHHHHHHHHh
Confidence 568999999 6999999999999998
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=89.38 E-value=0.084 Score=46.50 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
.+-|+|+|. +|+||||++..|++.+
T Consensus 2 ~klI~i~G~-~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 2 KKLYIITGP-AGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEEECS-TTSSHHHHHHHHHHHS
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHc
Confidence 345888888 9999999999999998
|
| >d1s1ma2 c.37.1.10 (A:1-266) CTP synthase PyrG, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: CTP synthase PyrG, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=88.98 E-value=1.1 Score=43.46 Aligned_cols=37 Identities=19% Similarity=0.227 Sum_probs=32.4
Q ss_pred CCeEEEEc-CCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWS-ANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~g-t~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
.+-+|||| .=++.||-++++.|.+.|+ .+|++|...|
T Consensus 3 tkyifvtGGV~S~lGKGi~~aSig~llk-----~~g~~V~~~K 40 (266)
T d1s1ma2 3 TNYIFVTGGVVSSLGKGIAAASLAAILE-----ARGLNVTIMK 40 (266)
T ss_dssp CEEEEEEECSSSCSCHHHHHHHHHHHHH-----TTTCCEEEEE
T ss_pred ceEEEEeCCcccccchHHHHHHHHHHHH-----hCCceeEEEe
Confidence 45678875 6799999999999999994 8999999999
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=88.34 E-value=3.3 Score=40.12 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=29.8
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
+...|.|. .++|||++++.++..++ +.|.+|+|+-
T Consensus 58 ~itei~G~-~~sGKT~l~l~~~~~aq-----k~g~~v~yiD 92 (268)
T d1xp8a1 58 RITEIYGP-ESGGKTTLALAIVAQAQ-----KAGGTCAFID 92 (268)
T ss_dssp SEEEEEES-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred eEEEEecC-CccchHHHHHHHHHHHH-----hCCCEEEEEE
Confidence 35667776 89999999999999985 7789999988
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=88.22 E-value=0.18 Score=45.29 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=22.9
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
.++|+++|. .|+||||++..|++.|
T Consensus 2 ~~~Iil~G~-~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 2 TEPIFMVGA-RGCGMTTVGRELARAL 26 (170)
T ss_dssp CCCEEEESC-TTSSHHHHHHHHHHHH
T ss_pred CCCEEEECC-CCCCHHHHHHHHHHHh
Confidence 467889999 9999999999999999
|
| >d2vo1a1 c.37.1.10 (A:1-273) CTP synthase PyrG, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: CTP synthase PyrG, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.75 E-value=0.89 Score=44.26 Aligned_cols=37 Identities=11% Similarity=0.204 Sum_probs=32.9
Q ss_pred CCeEEEEc-CCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 37 HPTFQIWS-ANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 37 ~~~~~I~g-t~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
|+-+|||| .=++.||-++++.|-+.|+ .+|++|...|
T Consensus 1 mKyifVtGGV~S~lGKGi~~aSig~ll~-----~~g~~V~~~K 38 (273)
T d2vo1a1 1 MKYILVTGGVISGIGKGIIASSVGTILK-----SCGLHVTSIK 38 (273)
T ss_dssp CEEEEEEECSSSSSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CeEEEEeCCcccccchHHHHHHHHHHHH-----hCCceeEEEe
Confidence 56788886 7799999999999999994 8899999999
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=86.12 E-value=0.35 Score=45.60 Aligned_cols=35 Identities=14% Similarity=0.212 Sum_probs=30.6
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
+.++|+|. +|+|||.+..+++..+. ++++++.|+-
T Consensus 37 n~l~l~G~-~G~GKTHLl~A~~~~~~-----~~~~~~~~~~ 71 (213)
T d1l8qa2 37 NPIFIYGS-VGTGKTHLLQAAGNEAK-----KRGYRVIYSS 71 (213)
T ss_dssp SSEEEECS-SSSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CcEEEECC-CCCcHHHHHHHHHHHhc-----cCccceEEec
Confidence 35899998 99999999999999995 6788888775
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=84.66 E-value=0.26 Score=42.67 Aligned_cols=24 Identities=8% Similarity=0.010 Sum_probs=19.0
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
+-|+|+|. +|+||||++..|++..
T Consensus 3 klIii~G~-pGsGKTTla~~L~~~~ 26 (152)
T d1ly1a_ 3 KIILTIGC-PGSGKSTWAREFIAKN 26 (152)
T ss_dssp EEEEEECC-TTSSHHHHHHHHHHHS
T ss_pred EEEEEECC-CCCCHHHHHHHHHHhC
Confidence 44667777 9999999998887664
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=84.29 E-value=1.6 Score=45.67 Aligned_cols=167 Identities=16% Similarity=0.113 Sum_probs=98.3
Q ss_pred ChHHHHHHHHHHhccCCCCCCeEEEe-CChHHHHHHHHHHHHHHhhccccccccccCCCccccCcceEEEEEeCCcccCc
Q 005009 442 YEPALECAELLLQGVGKGWASRAYFS-DNGSTAIEIALKMAFRKFSFDHEVLVDFLGKDTTEKCIELKVLALKGSYHGDT 520 (719)
Q Consensus 442 ~~~~~~Lae~L~~~~~~~~~~rv~f~-~SGsEA~E~AlKlA~r~~~~~~G~~~~~~~~~~~~~~~r~kII~~~~syHG~t 520 (719)
-+..-+|-+.|++++| ++.+-+. ..|+.|.-.|+.++ +.+++++ +++. ..+-|..+
T Consensus 107 Lq~l~e~q~~l~eltG---md~~n~s~~~ga~a~~~~~~~~-~~~~~~~------------------~~~v-~~~~~p~~ 163 (437)
T d1wyua1 107 LQATFEYQTMIAELAG---LEIANASMYDGATALAEGVLLA-LRETGRM------------------GVLV-SQGVHPEY 163 (437)
T ss_dssp HHHHHHHHHHHHHHHT---SSEECSCBSSHHHHHHHHHHHH-HHHHTCC------------------EEEE-ETTSCHHH
T ss_pred HHHHHHHHHHHHHhhC---CCccccCchHHHHHHHHHHHHH-Hhhhccc------------------cccc-ccccChHH
Confidence 3456689999999998 6666444 58999999999999 5666543 4443 55677766
Q ss_pred cccccccCCCCCCCCCCCCCccCCCcccCCCcccccCcceeecCcchhhhcccccccccccCccchhhcccCchhHHHHH
Q 005009 521 LGAMEAQAPSPYTGFLQQPWYSGRGLFLDPPTVFMYNSKWILSLPEWLYSKIVEHKDITFCSRDEIFYEERDSSDLASIY 600 (719)
Q Consensus 521 ~galslt~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~ 600 (719)
.++...+... . |.-.+.+| .++. ..+
T Consensus 164 ~~v~~t~a~~-----------~---------------g~~vv~v~--------------~~~~------~~~-------- 189 (437)
T d1wyua1 164 RAVLRAYLEA-----------V---------------GAKLLTLP--------------LEGG------RTP-------- 189 (437)
T ss_dssp HHHHHHHHHH-----------T---------------TCEEEEEC--------------CBTT------BCC--------
T ss_pred hhhhhhhccc-----------c---------------eeeEEeee--------------cccc------cch--------
Confidence 6554432100 0 01111111 1110 000
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccccccCCccccCCHHHHHHHHHHHHhcCCcEEEecccc---CccccCccccccc
Q 005009 601 SSYISQNLLQNPGLKVSGCIGALIIEPVVHAAGGMHMVDPLFQRILVKECQNRKIPVIFDEVFT---GFWRLGVETTADL 677 (719)
Q Consensus 601 ~~~le~~l~~~~~~~~~~~iAAvIvEPViqg~gG~~~pp~~fl~~Lr~Lc~k~gilLI~DEVqT---GfGRtG~~~a~e~ 677 (719)
.. .-.+++|||++.- -+.-|.+.. ++.+.+++++.|.++|+|=-.- |+-+-|.++
T Consensus 190 -------~~-----~~~~~~Aavmi~~--Pnt~G~~ed----~~~i~~~~h~~G~l~~~~ad~~al~~l~~Pg~~G---- 247 (437)
T d1wyua1 190 -------LP-----EVGEEVGAVVVQN--PNFLGALED----LGPFAEAAHGAGALFVAVADPLSLGVLKPPGAYG---- 247 (437)
T ss_dssp -------CC-----CCCTTEEEEEEES--SCTTSBCCC----HHHHHHHHHHTTCEEEEECCTTGGGTBCCHHHHT----
T ss_pred -------hh-----hhccceeEEEEcc--ccccccccc----hHHHHHHhhhccceEEeeechhhhhccccccccc----
Confidence 00 1246899999986 356687754 7899999999999988874332 222223222
Q ss_pred cCCCccee-----eehhccCCCccchheeEeCHHHHhhh
Q 005009 678 LGCVPDIA-----CYGKLLTGGVIPLAATLATNAVFDSF 711 (719)
Q Consensus 678 ~gv~PDIv-----tlgK~LggG~~Plsavl~~~~i~~~~ 711 (719)
.||+ +||=.+|+|=-..|.+.+++++...+
T Consensus 248 ----aDi~~g~~q~fg~p~g~GGP~~G~~a~~~~l~r~l 282 (437)
T d1wyua1 248 ----ADIAVGDGQSLGLPMGFGGPHFGFLATKKAFVRQL 282 (437)
T ss_dssp ----CSEEEEECTTTTCCCGGGCSCCEEEEECGGGGGGC
T ss_pred ----cceEeeccceeccccCCCcCccccccccchhhccc
Confidence 3776 34434443313356677777776654
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.85 E-value=0.23 Score=44.74 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=21.9
Q ss_pred eEEEEcCCCCCcHHHHHHHHHHHhh
Q 005009 39 TFQIWSANTSLGKTLVSAGLSSSFL 63 (719)
Q Consensus 39 ~~~I~gt~t~vGKT~vs~~L~~~l~ 63 (719)
.||++|. +|+||||++..|.+.|.
T Consensus 21 vI~L~G~-pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 21 TVWLTGL-SGAGKTTVSMALEEYLV 44 (195)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHHH
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHH
Confidence 5899999 69999999999999993
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.58 E-value=0.49 Score=42.04 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=21.8
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
|.++++|. .||||||++..|.+.|
T Consensus 2 p~IvliG~-~G~GKSTig~~La~~l 25 (165)
T d2iyva1 2 PKAVLVGL-PGSGKSTIGRRLAKAL 25 (165)
T ss_dssp CSEEEECS-TTSSHHHHHHHHHHHH
T ss_pred CcEEEECC-CCCCHHHHHHHHHHHh
Confidence 56788899 9999999999999999
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=82.10 E-value=0.5 Score=42.03 Aligned_cols=24 Identities=13% Similarity=0.209 Sum_probs=22.0
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
++|+|+|. +|+|||+++..|++.|
T Consensus 1 k~I~liG~-~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 1 KNIVFIGF-MGSGKSTLARALAKDL 24 (161)
T ss_dssp CCEEEECC-TTSCHHHHHHHHHHHH
T ss_pred CcEEEECC-CCCCHHHHHHHHHHHh
Confidence 46889998 9999999999999999
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.06 E-value=0.52 Score=42.86 Aligned_cols=33 Identities=15% Similarity=0.068 Sum_probs=26.5
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 40 ~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
|+++|. +||||||++..|++.+. ..|+++..+-
T Consensus 5 i~l~Gl-pgsGKSTla~~L~~~l~-----~~~~~~~~~~ 37 (213)
T d1bifa1 5 IVMVGL-PARGKTYISKKLTRYLN-----FIGVPTREFN 37 (213)
T ss_dssp EEEECC-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred EEEECC-CCCCHHHHHHHHHHHHH-----hcCCCCeEEc
Confidence 677788 99999999999999994 5677765553
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=81.85 E-value=0.43 Score=41.97 Aligned_cols=25 Identities=16% Similarity=0.399 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 37 HPTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 37 ~~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
.+.|+|+|. +|+||||++..|++.+
T Consensus 6 ~~iivl~G~-~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 6 HHIYVLMGV-SGSGKSAVASEVAHQL 30 (171)
T ss_dssp SEEEEEECS-TTSCHHHHHHHHHHHH
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHh
Confidence 445777888 8999999999999998
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=81.28 E-value=6.5 Score=40.43 Aligned_cols=64 Identities=11% Similarity=0.072 Sum_probs=41.4
Q ss_pred HHHHHHHHHhcCCcEEEecccc-CccccCccccccccCCCccee--eehhccCCCccchheeEeC---HHHHhhh
Q 005009 643 QRILVKECQNRKIPVIFDEVFT-GFWRLGVETTADLLGCVPDIA--CYGKLLTGGVIPLAATLAT---NAVFDSF 711 (719)
Q Consensus 643 l~~Lr~Lc~k~gilLI~DEVqT-GfGRtG~~~a~e~~gv~PDIv--tlgK~LggG~~Plsavl~~---~~i~~~~ 711 (719)
+++++++|++.|++|++|-.|. |+ -.|..+- +-+. ..|+| |.-|.|.|- .-|.++++ +++++.+
T Consensus 182 ~~~~reiad~vga~l~~D~aH~~GL-Ia~g~~~-sP~~-~aDvvt~tThKtlrGP--rggiI~~~~~~~~~~~~i 251 (416)
T d1dfoa_ 182 WAKMREIADSIGAYLFVDMAHVAGL-VAAGVYP-NPVP-HAHVVTTTTHKTLAGP--RGGLILAKGGSEELYKKL 251 (416)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTHHH-HHHTSSC-CCTT-TSSEEEEESSSTTCCC--SCEEEEESSCCHHHHHHH
T ss_pred HHHHHHHHHhcCceEEcchhhhhcc-eeccccC-Cccc-ccceeeeehhhcccCC--CceEEEeccchHhHHHHH
Confidence 8999999999999999999996 54 2222221 1122 25988 578999862 11235554 4655544
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=80.99 E-value=0.38 Score=42.37 Aligned_cols=24 Identities=13% Similarity=0.157 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHh
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSF 62 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l 62 (719)
+.|+|+|. +|+||||++..|.+.+
T Consensus 5 ~iI~l~G~-~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 5 NILLLSGH-PGSGKSTIAEALANLP 28 (176)
T ss_dssp EEEEEEEC-TTSCHHHHHHHHHTCS
T ss_pred eEEEEECC-CCCCHHHHHHHHHHHh
Confidence 35888998 9999999998876655
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=80.82 E-value=4.4 Score=39.04 Aligned_cols=35 Identities=17% Similarity=0.294 Sum_probs=29.9
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
+...|+|. +++|||++++-++...+ ++|.++.|+-
T Consensus 55 ~itei~G~-~gsGKTtl~l~~~~~~q-----~~g~~~vyid 89 (263)
T d1u94a1 55 RIVEIYGP-ESSGKTTLTLQVIAAAQ-----REGKTCAFID 89 (263)
T ss_dssp SEEEEECS-TTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred eEEEEecC-CCcHHHHHHHHHHHHHH-----cCCCEEEEEc
Confidence 45677776 89999999999999995 7789999876
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=80.45 E-value=1.3 Score=41.41 Aligned_cols=36 Identities=22% Similarity=0.405 Sum_probs=27.7
Q ss_pred CeEEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEEc
Q 005009 38 PTFQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYLK 78 (719)
Q Consensus 38 ~~~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~K 78 (719)
+.++|+|. +|+|||+++..|++.+. . ..+.++.+..
T Consensus 44 ~~lll~Gp-pGtGKT~l~~~l~~~l~---~-~~~~~~~~~~ 79 (276)
T d1fnna2 44 PRATLLGR-PGTGKTVTLRKLWELYK---D-KTTARFVYIN 79 (276)
T ss_dssp CEEEEECC-TTSSHHHHHHHHHHHHT---T-SCCCEEEEEE
T ss_pred CceEEECC-CCCCHHHHHHHHHHHHh---c-ccCCcEEEec
Confidence 46999999 99999999999999993 2 4445554444
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=80.24 E-value=0.78 Score=40.97 Aligned_cols=32 Identities=19% Similarity=0.188 Sum_probs=25.4
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHhhcCCCCCCCCceeEE
Q 005009 40 FQIWSANTSLGKTLVSAGLSSSFLLSPTSSANKKFVYL 77 (719)
Q Consensus 40 ~~I~gt~t~vGKT~vs~~L~~~l~~~~~~~~g~~v~~~ 77 (719)
|-|+|. +|+||||++..|.+.|. ..|..+..+
T Consensus 25 IgI~G~-~GSGKSTla~~L~~~l~-----~~~~~~~~~ 56 (198)
T d1rz3a_ 25 LGIDGL-SRSGKTTLANQLSQTLR-----EQGISVCVF 56 (198)
T ss_dssp EEEEEC-TTSSHHHHHHHHHHHHH-----HTTCCEEEE
T ss_pred EEEECC-CCCCHHHHHHHHHHHhc-----cccccceec
Confidence 558887 99999999999999994 556666544
|