Citrus Sinensis ID: 005031

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------72
MERGATTENGHQNGGLEGLCKNNNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC
ccccccccccccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHccccEEEEccccccHHHHHHHHcccccEEEcHHHHHHHHHHHHHHHHHHcccccEEEcccccccccccccccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHccccEEEEcccccEEcHHHHHHHcccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccEEcccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHcccccccccccccccccHHHHHHHHHccccHHHHHHHcccccccccccc
cccccEEEccccccccccEEEcccccccccccccHHHHHHHHcccHHHHHHHHHHHHcccEEEEccccEcHHHHHHHHHcccEEEEcHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccccccHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccccccccEcccccHHHHHHHHHHHHcccccEEEccccEEEEHHHHHHHcccccccccccHHHHHHcEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHcHHHHHHHccHHHHHHHHHHHHHHccccHHHHcccHcccccccccccccHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccccEEEccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHEccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccccHHHHccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccccHHHHHHHHccccccccc
mergattenghqnggleglcknnnynyssgdalnWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMnkgtdsygvttgfgatshrrtknGGALQKELIRFLNAgifgngtesshtlphsATRAAMLVRVNTLLQGYSGIRFEILEAITKLLnhnitpclplrgtitasgdlvpLSYIAGlltgrpnskatgpngeiidAQEAskqagfgffelqpkeglalvngtAVGSGLASMVLFEANNLALLSEILSAIFAEVmqgkpeftdhlthklkhhpgQIEAAAIMEHILDGSSYVNAAKKlheidplqkpkqdryalrtspqwlgpqIEVIRFATKSIEREInsvndnplidvsrnkalhggnfqgtpigvsmdNTRLAIAAIGKLMFAQFSELVNDFynnglpsnlsggrnpsldygfkGAEIAMASYCSELQFlanpvtnhvqsaeqhnqdvnslglissrktAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTvgasgelhpsrfCEKDLLKAADREHvfayiddpcsatypLMQKLRQVLVEHAlnngenektaNSSIFQKIAAFEEELKTVLPKEVENARQtvengsptipnrikecrsyplYRLVREELgsnfltgekvtspgeeFDKVFTAMCQGKIIDPMLEClrewngaplpic
mergattenghqnggleGLCKNNNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATsstnvelsesaregvkassDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEidplqkpkqdRYALrtspqwlgpqiEVIRFATKSIEREINSVNDNPLIDVSRNKALhggnfqgtpigvsMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTvgasgelhpsrFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNgenektansSIFQKIAAFEEELKTVLPkevenarqtvengsptipnrikecrSYPLYRLVREELGsnfltgekvtspgeEFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC
MERGATTENGHQNGGLEGLCKNNNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC
*****************GLCKNNNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIAT*********************************GVTTGFG**********GALQKELIRFLNAGIFGNGTE**HTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTG**********************AGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEI**********YALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHV************LGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALN***********IFQKIAAFEEELKTV********************NRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA*****
******************LCKNNNYNYS*GDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSY***************PKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNG*N**TANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC
***********QNGGLEGLCKNNNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIAT*****************SSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC
****ATTE***QNGGLEGLCKNNNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC
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MERGATTENGHQNGGLEGLCKNNNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query718 2.2.26 [Sep-21-2011]
P45730715 Phenylalanine ammonia-lya yes no 0.983 0.987 0.847 0.0
O64963717 Phenylalanine ammonia-lya N/A no 0.990 0.991 0.838 0.0
P45726714 Phenylalanine ammonia-lya N/A no 0.988 0.994 0.836 0.0
O23865708 Phenylalanine ammonia-lya N/A no 0.972 0.985 0.849 0.0
P25872715 Phenylalanine ammonia-lya N/A no 0.980 0.984 0.832 0.0
Q42667722 Phenylalanine ammonia-lya N/A no 0.990 0.984 0.830 0.0
P27991713 Phenylalanine ammonia-lya yes no 0.979 0.985 0.841 0.0
P45734725 Phenylalanine ammonia-lya N/A no 0.969 0.96 0.851 0.0
P45729718 Phenylalanine ammonia-lya N/A no 0.983 0.983 0.834 0.0
Q01861723 Phenylalanine ammonia-lya N/A no 0.981 0.975 0.834 0.0
>sp|P45730|PALY_POPTR Phenylalanine ammonia-lyase OS=Populus trichocarpa GN=PAL PE=2 SV=1 Back     alignment and function desciption
 Score = 1268 bits (3282), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 608/717 (84%), Positives = 654/717 (91%), Gaps = 11/717 (1%)

Query: 7   TENGHQNGGLEGLCKNNNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGG 66
           T+NG+QNG LE LC N        D L+WGV AE +KGSHL+EVKRMVA+YRKPVV LGG
Sbjct: 5   TKNGYQNGSLESLCVNQR------DPLSWGVAAEAMKGSHLDEVKRMVADYRKPVVKLGG 58

Query: 67  ETLTVAQVAAIA---TSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSH 123
           ETLT+AQVA+IA   T    VELSESAR GVKASSDWVM+SM+KGTDSYGVTTGFGATSH
Sbjct: 59  ETLTIAQVASIAGHDTGDVKVELSESARPGVKASSDWVMDSMDKGTDSYGVTTGFGATSH 118

Query: 124 RRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEIL 183
           RRTK GGALQKELIRFLNAGIFGNGTE+ HTLPHSATRAAMLVR+NTLLQGYSGIRFEIL
Sbjct: 119 RRTKQGGALQKELIRFLNAGIFGNGTETCHTLPHSATRAAMLVRINTLLQGYSGIRFEIL 178

Query: 184 EAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASK 243
           EAIT+LLN+NITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGP GE++DA EA K
Sbjct: 179 EAITRLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPTGEVLDAAEAFK 238

Query: 244 QAGF--GFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPE 301
            AG   GFFELQPKEGLALVNGTAVGSGLASMVLFE N LA+LSE+LSAIFAEVM GKPE
Sbjct: 239 AAGIESGFFELQPKEGLALVNGTAVGSGLASMVLFETNVLAVLSELLSAIFAEVMNGKPE 298

Query: 302 FTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQW 361
           FTDHLTHKLKHHPGQIEAAAIMEHILDGS+Y+ AAKKLHE DPLQKPKQDRYALRTSPQW
Sbjct: 299 FTDHLTHKLKHHPGQIEAAAIMEHILDGSAYMKAAKKLHETDPLQKPKQDRYALRTSPQW 358

Query: 362 LGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAI 421
           LGPQIEVIRF+TKSIEREINSVNDNPLIDVSRNKA+HGGNFQGTPIGVSMDN RLAIA+I
Sbjct: 359 LGPQIEVIRFSTKSIEREINSVNDNPLIDVSRNKAIHGGNFQGTPIGVSMDNVRLAIASI 418

Query: 422 GKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNH 481
           GKL+FAQFSELVNDFYNNGLPSNL+  RNPSLDYGFKGAEIAMASYCSELQ+LANPVT H
Sbjct: 419 GKLLFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTTH 478

Query: 482 VQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNT 541
           VQSAEQHNQDVNSLGLISSRKTAEAVDILKLMS+TFLVALCQAIDLRHLEENLK  VKNT
Sbjct: 479 VQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSTTFLVALCQAIDLRHLEENLKSAVKNT 538

Query: 542 VSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVE 601
           VSQV+K+VLT GA+GELHPSRFCEK+LLK  DRE+VFAY+DDPCSATYPLMQKLRQV V+
Sbjct: 539 VSQVSKRVLTTGANGELHPSRFCEKELLKVVDREYVFAYVDDPCSATYPLMQKLRQVFVD 598

Query: 602 HALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYP 661
           HAL NGENEK  ++S+FQKI AFEEELK +LPKEVE+AR   ++G+  I N+IKECRSYP
Sbjct: 599 HALENGENEKNFSTSVFQKIEAFEEELKALLPKEVESARAAYDSGNSAIDNKIKECRSYP 658

Query: 662 LYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 718
           LY+ VREELG+  LTGEKV SPGEEFDKVFTAMCQGKIIDPMLECL EWNG+PLPIC
Sbjct: 659 LYKFVREELGTVLLTGEKVQSPGEEFDKVFTAMCQGKIIDPMLECLGEWNGSPLPIC 715
This is a key enzyme of plant metabolism catalyzing the first reaction in the biosynthesis from L-phenylalanine of a wide variety of natural products based on the phenylpropane skeleton.
Populus trichocarpa (taxid: 3694)
EC: 4EC: .EC: 3EC: .EC: 1EC: .EC: 2EC: 4
>sp|O64963|PAL1_PRUAV Phenylalanine ammonia-lyase 1 OS=Prunus avium GN=PAL1 PE=2 SV=1 Back     alignment and function description
>sp|P45726|PALY_CAMSI Phenylalanine ammonia-lyase OS=Camellia sinensis GN=PAL PE=2 SV=1 Back     alignment and function description
>sp|O23865|PAL1_DAUCA Phenylalanine ammonia-lyase 1 OS=Daucus carota GN=PAL1 PE=3 SV=1 Back     alignment and function description
>sp|P25872|PAL1_TOBAC Phenylalanine ammonia-lyase OS=Nicotiana tabacum GN=TPA1 PE=2 SV=1 Back     alignment and function description
>sp|Q42667|PALY_CITLI Phenylalanine ammonia-lyase OS=Citrus limon GN=PAL6 PE=2 SV=1 Back     alignment and function description
>sp|P27991|PAL1_SOYBN Phenylalanine ammonia-lyase 1 OS=Glycine max GN=PAL1 PE=3 SV=1 Back     alignment and function description
>sp|P45734|PALY_TRISU Phenylalanine ammonia-lyase OS=Trifolium subterraneum GN=PAL1 PE=3 SV=1 Back     alignment and function description
>sp|P45729|PAL3_PETCR Phenylalanine ammonia-lyase 3 OS=Petroselinum crispum GN=PAL3 PE=2 SV=1 Back     alignment and function description
>sp|Q01861|PAL1_PEA Phenylalanine ammonia-lyase 1 OS=Pisum sativum GN=PAL1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query718
4808128718 phenylalanine-ammonia lyase [Citrus clem 1.0 1.0 0.983 0.0
4808126721 phenylalanine-ammonia lyase [Citrus clem 0.997 0.993 0.955 0.0
237690152723 phenylalanine ammonia-lyase [Litchi chin 0.984 0.977 0.875 0.0
113203757713 phenylalanine ammonia lyase [Jatropha cu 0.979 0.985 0.868 0.0
332656160726 phenylalanine ammonia lyase [Morus alba 1.0 0.988 0.848 0.0
14326459712 phenylalanine ammonia-lyase 2 [Manihot e 0.981 0.990 0.854 0.0
255556976714 Phenylalanine ammonia-lyase, putative [R 0.986 0.991 0.857 0.0
225454653710 PREDICTED: phenylalanine ammonia-lyase [ 0.977 0.988 0.861 0.0
122893276710 phenylalanin ammonia-lyase [Vitis vinife 0.977 0.988 0.861 0.0
225440011710 PREDICTED: phenylalanine ammonia-lyase [ 0.977 0.988 0.861 0.0
>gi|4808128|emb|CAB42794.1| phenylalanine-ammonia lyase [Citrus clementina x Citrus reticulata] Back     alignment and taxonomy information
 Score = 1461 bits (3782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 706/718 (98%), Positives = 711/718 (99%)

Query: 1   MERGATTENGHQNGGLEGLCKNNNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKP 60
           ME GATTENGHQNGGLEGLCKNNNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKP
Sbjct: 1   MEIGATTENGHQNGGLEGLCKNNNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKP 60

Query: 61  VVNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGA 120
           VVNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGA
Sbjct: 61  VVNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGA 120

Query: 121 TSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRF 180
           TSHR TKNGGALQKELI+FLNAGIFGNGT+SSHTLPHSATRAAMLVRVNTLLQGYSGIRF
Sbjct: 121 TSHRTTKNGGALQKELIKFLNAGIFGNGTKSSHTLPHSATRAAMLVRVNTLLQGYSGIRF 180

Query: 181 EILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQE 240
           EIL+AITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNG+IID QE
Sbjct: 181 EILKAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGQIIDPQE 240

Query: 241 ASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKP 300
           ASK AGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKP
Sbjct: 241 ASKPAGFGFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKP 300

Query: 301 EFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQ 360
           EFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVN AKKLHEIDPLQKPKQDRYALRTSPQ
Sbjct: 301 EFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNVAKKLHEIDPLQKPKQDRYALRTSPQ 360

Query: 361 WLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAA 420
           WLGPQIE+IRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAA
Sbjct: 361 WLGPQIEMIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAA 420

Query: 421 IGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTN 480
           IGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTN
Sbjct: 421 IGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTN 480

Query: 481 HVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKN 540
           HV SAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKN
Sbjct: 481 HVHSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKN 540

Query: 541 TVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLV 600
           TVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLV
Sbjct: 541 TVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLV 600

Query: 601 EHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSY 660
           EHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSY
Sbjct: 601 EHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSY 660

Query: 661 PLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 718
           PLYRLVRE LGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC
Sbjct: 661 PLYRLVREGLGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 718

Source: Citrus clementina x Citrus reticulata

Species: Citrus clementina x Citrus reticulata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|4808126|emb|CAB42793.1| phenylalanine-ammonia lyase [Citrus clementina x Citrus reticulata] Back     alignment and taxonomy information
>gi|237690152|gb|ACR15762.1| phenylalanine ammonia-lyase [Litchi chinensis] Back     alignment and taxonomy information
>gi|113203757|gb|ABI33979.1| phenylalanine ammonia lyase [Jatropha curcas] Back     alignment and taxonomy information
>gi|332656160|gb|AEE81750.1| phenylalanine ammonia lyase [Morus alba var. multicaulis] Back     alignment and taxonomy information
>gi|14326459|gb|AAK60275.1|AF383152_1 phenylalanine ammonia-lyase 2 [Manihot esculenta] Back     alignment and taxonomy information
>gi|255556976|ref|XP_002519521.1| Phenylalanine ammonia-lyase, putative [Ricinus communis] gi|223541384|gb|EEF42935.1| Phenylalanine ammonia-lyase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225454653|ref|XP_002268181.1| PREDICTED: phenylalanine ammonia-lyase [Vitis vinifera] Back     alignment and taxonomy information
>gi|122893276|gb|ABM67591.1| phenylalanin ammonia-lyase [Vitis vinifera] Back     alignment and taxonomy information
>gi|225440011|ref|XP_002281799.1| PREDICTED: phenylalanine ammonia-lyase [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query718
TAIR|locus:2057981725 PAL1 "PHE ammonia lyase 1" [Ar 0.995 0.986 0.825 0.0
TAIR|locus:2101958717 PAL2 "phenylalanine ammonia-ly 0.958 0.959 0.839 6.99999999925e-315
TAIR|locus:2076244707 PAL4 "phenylalanine ammonia-ly 0.974 0.990 0.808 9.4e-304
ASPGD|ASPL0000000997701 AN6075 [Emericella nidulans (t 0.828 0.848 0.350 2.2e-89
ASPGD|ASPL0000017810686 AN3897 [Emericella nidulans (t 0.880 0.921 0.334 8.9e-86
TIGR_CMR|SO_4374521 SO_4374 "histidine ammonia-lya 0.516 0.712 0.346 2.1e-54
UNIPROTKB|Q9KSQ4511 hutH "Histidine ammonia-lyase" 0.614 0.863 0.313 2.1e-54
TIGR_CMR|VC_1202511 VC_1202 "histidine ammonia-lya 0.614 0.863 0.313 2.1e-54
UNIPROTKB|B8ZV93526 tam "Tyrosine 2,3-aminomutase" 0.621 0.847 0.330 2.4e-53
UNIPROTKB|B8ZV94526 tam "Tyrosine 2,3-aminomutase" 0.621 0.847 0.328 3e-53
TAIR|locus:2057981 PAL1 "PHE ammonia lyase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3072 (1086.5 bits), Expect = 0., P = 0.
 Identities = 601/728 (82%), Positives = 653/728 (89%)

Query:     1 ME-RGATTENGHQNGGLEG-LC----KNNNYNYSSGDALNWGVMAETLKGSHLEEVKRMV 54
             ME  GA   NG   GG++  LC    K  N   ++ D LNWG  AE +KGSHL+EVKRMV
Sbjct:     1 MEINGAHKSNG---GGVDAMLCGGDIKTKNMVINAEDPLNWGAAAEQMKGSHLDEVKRMV 57

Query:    55 AEYRKPVVNLGGETLTVAQVAAIAT--SSTNVELSESAREGVKASSDWVMESMNKGTDSY 112
             AE+RKPVVNLGGETLT+ QVAAI+T  +S  VELSE+AR GV ASSDWVMESMNKGTDSY
Sbjct:    58 AEFRKPVVNLGGETLTIGQVAAISTIGNSVKVELSETARAGVNASSDWVMESMNKGTDSY 117

Query:   113 GVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLL 172
             GVTTGFGATSHRRTKNG ALQKELIRFLNAGIFG+  E+SHTLPHSATRAAMLVR+NTLL
Sbjct:   118 GVTTGFGATSHRRTKNGVALQKELIRFLNAGIFGSTKETSHTLPHSATRAAMLVRINTLL 177

Query:   173 QGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPN 232
             QG+SGIRFEILEAIT  LN+NITP LPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPN
Sbjct:   178 QGFSGIRFEILEAITSFLNNNITPSLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPN 237

Query:   233 GEIIDAQEASKQAGF--GFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSA 290
             GE + A+EA K AG   GFF+LQPKEGLALVNGTAVGSG+ASMVLFE N L++L+EILSA
Sbjct:   238 GEALTAEEAFKLAGISSGFFDLQPKEGLALVNGTAVGSGMASMVLFETNVLSVLAEILSA 297

Query:   291 IFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQ 350
             +FAEVM GKPEFTDHLTH+LKHHPGQIEAAAIMEHILDGSSY+  A+KLHE+DPLQKPKQ
Sbjct:   298 VFAEVMSGKPEFTDHLTHRLKHHPGQIEAAAIMEHILDGSSYMKLAQKLHEMDPLQKPKQ 357

Query:   351 DRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVS 410
             DRYALRTSPQWLGPQIEVIR+ATKSIEREINSVNDNPLIDVSRNKA+HGGNFQGTPIGVS
Sbjct:   358 DRYALRTSPQWLGPQIEVIRYATKSIEREINSVNDNPLIDVSRNKAIHGGNFQGTPIGVS 417

Query:   411 MDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSE 470
             MDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNL+  RNPSLDYGFKGAEIAMASYCSE
Sbjct:   418 MDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSE 477

Query:   471 LQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHL 530
             LQ+LANPVT+HVQSAEQHNQDVNSLGLISSRKT+EAVDILKLMS+TFLVA+CQA+DLRHL
Sbjct:   478 LQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTSEAVDILKLMSTTFLVAICQAVDLRHL 537

Query:   531 EENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYP 590
             EENL+ TVKNTVSQVAKKVLT G +GELHPSRFCEKDLLK  DRE V+ Y DDPCSATYP
Sbjct:   538 EENLRQTVKNTVSQVAKKVLTTGVNGELHPSRFCEKDLLKVVDREQVYTYADDPCSATYP 597

Query:   591 LMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTI 650
             L+QKLRQV+V+HAL NGE+EK A +SIF KI AFEEELK VLPKEVE AR   +NG+  I
Sbjct:   598 LIQKLRQVIVDHALINGESEKNAVTSIFHKIGAFEEELKAVLPKEVEAARAAYDNGTSAI 657

Query:   651 PNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREW 710
             PNRIKECRSYPLYR VREELG+  LTGEKVTSPGEEFDKVFTA+C+GKIIDPM+ECL EW
Sbjct:   658 PNRIKECRSYPLYRFVREELGTELLTGEKVTSPGEEFDKVFTAICEGKIIDPMMECLNEW 717

Query:   711 NGAPLPIC 718
             NGAP+PIC
Sbjct:   718 NGAPIPIC 725
GO:0003824 "catalytic activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM;IEA
GO:0006559 "L-phenylalanine catabolic process" evidence=IEA
GO:0009058 "biosynthetic process" evidence=IEA
GO:0009699 "phenylpropanoid biosynthetic process" evidence=TAS
GO:0016841 "ammonia-lyase activity" evidence=IEA
GO:0045548 "phenylalanine ammonia-lyase activity" evidence=ISS;IDA;TAS
GO:0006979 "response to oxidative stress" evidence=IEP
GO:0080167 "response to karrikin" evidence=IEP
GO:0009555 "pollen development" evidence=IMP
GO:0009819 "drought recovery" evidence=IMP
GO:0010224 "response to UV-B" evidence=IMP
GO:0046244 "salicylic acid catabolic process" evidence=IMP
GO:0046274 "lignin catabolic process" evidence=IMP
GO:0006598 "polyamine catabolic process" evidence=RCA
GO:0009611 "response to wounding" evidence=RCA;TAS
GO:0009698 "phenylpropanoid metabolic process" evidence=RCA
GO:0009805 "coumarin biosynthetic process" evidence=RCA
GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA
GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA
GO:0006952 "defense response" evidence=TAS
TAIR|locus:2101958 PAL2 "phenylalanine ammonia-lyase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076244 PAL4 "phenylalanine ammonia-lyase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000000997 AN6075 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
ASPGD|ASPL0000017810 AN3897 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
TIGR_CMR|SO_4374 SO_4374 "histidine ammonia-lyase, putative" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KSQ4 hutH "Histidine ammonia-lyase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_1202 VC_1202 "histidine ammonia-lyase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
UNIPROTKB|B8ZV93 tam "Tyrosine 2,3-aminomutase" [Myxococcus fulvus (taxid:33)] Back     alignment and assigned GO terms
UNIPROTKB|B8ZV94 tam "Tyrosine 2,3-aminomutase" [Myxococcus sp. Mx-B0 (taxid:563923)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P45724PAL2_ARATH4, ., 3, ., 1, ., 2, 40.83950.95820.9595nono
P31425PAL1_SOLTU4, ., 3, ., 1, ., 2, 40.80720.98880.9861N/Ano
P45726PALY_CAMSI4, ., 3, ., 1, ., 2, 40.83650.98880.9943N/Ano
P45727PALY_PERAE4, ., 3, ., 1, ., 2, 40.86610.85930.9951N/Ano
O04058PALY_HELAN4, ., 3, ., 1, ., 2, 40.84500.91360.9835N/Ano
P45725PAL3_ARATH4, ., 3, ., 1, ., 2, 40.74560.94420.9769nono
P25872PAL1_TOBAC4, ., 3, ., 1, ., 2, 40.83280.98050.9846N/Ano
Q9SS45PAL4_ARATH4, ., 3, ., 1, ., 2, 40.80850.97490.9900nono
P45728PAL2_PETCR4, ., 3, ., 1, ., 2, 40.82910.98320.9860N/Ano
P45729PAL3_PETCR4, ., 3, ., 1, ., 2, 40.83420.98320.9832N/Ano
P19143PAL3_PHAVU4, ., 3, ., 1, ., 2, 40.73810.95960.9704N/Ano
P19142PAL2_PHAVU4, ., 3, ., 1, ., 2, 40.84740.96230.9705N/Ano
P52777PALY_PINTA4, ., 3, ., 1, ., 2, 40.66230.96230.9164N/Ano
Q43052PAL2_POPKI4, ., 3, ., 1, ., 2, 40.83300.96930.9802N/Ano
Q9SMK9PAL2_CICAR4, ., 3, ., 1, ., 2, 40.81790.98740.9874N/Ano
Q8VXG7PALY_MAIZE4, ., 3, ., 1, ., 2, 50.69550.95260.9729N/Ano
P27991PAL1_SOYBN4, ., 3, ., 1, ., 2, 40.84170.97910.9859yesno
P27990PALY_MEDSA4, ., 3, ., 1, ., 2, 40.83510.98460.9751N/Ano
P14717PAL1_ORYSJ4, ., 3, ., 1, ., 2, 40.72720.95260.9757nono
P26600PAL5_SOLLC4, ., 3, ., 1, ., 2, 40.82270.98880.9847N/Ano
Q9M568PAL1_RUBID4, ., 3, ., 1, ., 2, 40.80670.97210.9830N/Ano
O23924PALY_DIGLA4, ., 3, ., 1, ., 2, 40.82360.98460.9915N/Ano
P45733PAL3_TOBAC4, ., 3, ., 1, ., 2, 40.85590.95820.9662N/Ano
P45732PALY_STYHU4, ., 3, ., 1, ., 2, 40.83420.98600.9902N/Ano
P45731PAL1_POPKI4, ., 3, ., 1, ., 2, 40.84060.94150.9912N/Ano
P45730PALY_POPTR4, ., 3, ., 1, ., 2, 40.84790.98320.9874yesno
P45734PALY_TRISU4, ., 3, ., 1, ., 2, 40.85120.96930.96N/Ano
Q04593PAL2_PEA4, ., 3, ., 1, ., 2, 40.82960.98880.9806N/Ano
Q42667PALY_CITLI4, ., 3, ., 1, ., 2, 40.83080.99020.9847N/Ano
P07218PAL1_PHAVU4, ., 3, ., 1, ., 2, 40.83200.70190.9960N/Ano
O23865PAL1_DAUCA4, ., 3, ., 1, ., 2, 40.84960.97210.9858N/Ano
Q42609PALY_BROFI4, ., 3, ., 1, ., 2, 40.80530.97070.9914N/Ano
O49835PAL1_LITER4, ., 3, ., 1, ., 2, 40.81830.97910.9901N/Ano
O49836PAL2_LITER4, ., 3, ., 1, ., 2, 40.81740.97070.9886N/Ano
Q42858PAL2_IPOBA4, ., 3, ., 1, ., 2, 40.81810.95540.9689N/Ano
Q43210PALY_WHEAT4, ., 3, ., 1, ., 2, 40.79530.95960.9842N/Ano
P35510PAL1_ARATH4, ., 3, ., 1, ., 2, 40.82730.99160.9820yesno
P35511PAL1_SOLLC4, ., 3, ., 1, ., 2, 40.81610.96790.9872N/Ano
P35513PAL2_TOBAC4, ., 3, ., 1, ., 2, 40.85150.95820.9662N/Ano
Q01861PAL1_PEA4, ., 3, ., 1, ., 2, 40.83470.98180.9751N/Ano
O64963PAL1_PRUAV4, ., 3, ., 1, ., 2, 40.83830.99020.9916N/Ano
P31426PAL2_SOLTU4, ., 3, ., 1, ., 2, 40.81660.79800.9711N/Ano
P24481PAL1_PETCR4, ., 3, ., 1, ., 2, 40.82910.98320.9860N/Ano
P14166PAL1_IPOBA4, ., 3, ., 1, ., 2, 40.81960.95820.9731N/Ano
Q40910PAL4_POPKI4, ., 3, ., 1, ., 2, 40.85460.79100.9947N/Ano
A2X7F7PAL2_ORYSI4, ., 3, ., 1, ., 2, 40.76360.98320.9901N/Ano
Q0DZE0PAL2_ORYSJ4, ., 3, ., 1, ., 2, 40.76220.98320.9901nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.3.1.240.994
3rd Layer4.3.10.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query718
PLN02457706 PLN02457, PLN02457, phenylalanine ammonia-lyase 0.0
TIGR01226680 TIGR01226, phe_am_lyase, phenylalanine ammonia-lya 0.0
pfam00221477 pfam00221, Lyase_aromatic, Aromatic amino acid lya 0.0
cd00332444 cd00332, PAL-HAL, Phenylalanine ammonia-lyase (PAL 0.0
COG2986498 COG2986, HutH, Histidine ammonia-lyase [Amino acid 1e-102
PRK09367500 PRK09367, PRK09367, histidine ammonia-lyase; Provi 3e-95
TIGR01225506 TIGR01225, hutH, histidine ammonia-lyase 4e-87
TIGR03832507 TIGR03832, Tyr_2_3_mutase, tyrosine 2,3-aminomutas 2e-63
cd01594231 cd01594, Lyase_I_like, Lyase class I_like superfam 2e-17
>gnl|CDD|215251 PLN02457, PLN02457, phenylalanine ammonia-lyase Back     alignment and domain information 
 Score = 1481 bits (3837), Expect = 0.0
 Identities = 600/713 (84%), Positives = 632/713 (88%), Gaps = 12/713 (1%)

Query: 11  HQNGGLEGLCKNNNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLT 70
                 EG C          D LNWG  AE LKGSHL+EVKRMVAEYRKPVV L GETLT
Sbjct: 1   VGAASSEGFCI------GGADPLNWGKAAEALKGSHLDEVKRMVAEYRKPVVKLEGETLT 54

Query: 71  VAQVAAIATSSTN---VELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTK 127
           +AQVAA+A        VELSESAR  VKASSDWVMESM KGTDSYGVTTGFGATSHRRTK
Sbjct: 55  IAQVAAVARRGAGGVRVELSESARARVKASSDWVMESMMKGTDSYGVTTGFGATSHRRTK 114

Query: 128 NGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAIT 187
            GGALQ+ELIRFLNAGIFG G ES HTLP SATRAAMLVR+NTLLQGYSGIRFEILEAIT
Sbjct: 115 QGGALQRELIRFLNAGIFGTG-ESGHTLPASATRAAMLVRINTLLQGYSGIRFEILEAIT 173

Query: 188 KLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGF 247
           KLLN N+TPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKA  P+GE + A EA K AG 
Sbjct: 174 KLLNANVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVTPDGEKVTAAEAFKLAGI 233

Query: 248 --GFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDH 305
             GFFELQPKEGLALVNGTAVGS LAS VLF+AN LA+L+E+LSA+F EVMQGKPEFTDH
Sbjct: 234 EGGFFELQPKEGLALVNGTAVGSALASTVLFDANVLAVLAEVLSAVFCEVMQGKPEFTDH 293

Query: 306 LTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQ 365
           LTHKLKHHPGQIEAAAIMEHILDGSSY+ AAKKLHE DPLQKPKQDRYALRTSPQWLGPQ
Sbjct: 294 LTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHETDPLQKPKQDRYALRTSPQWLGPQ 353

Query: 366 IEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLM 425
           IEVIR ATKSIEREINSVNDNPLIDV+R+KALHGGNFQGTPIGVSMDNTRLAIAAIGKLM
Sbjct: 354 IEVIRAATKSIEREINSVNDNPLIDVARDKALHGGNFQGTPIGVSMDNTRLAIAAIGKLM 413

Query: 426 FAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSA 485
           FAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQ+LANPVTNHVQSA
Sbjct: 414 FAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQYLANPVTNHVQSA 473

Query: 486 EQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQV 545
           EQHNQDVNSLGLIS+RKTAEAVDILKLMSST+LVALCQAIDLRHLEENLK  VKNTVSQV
Sbjct: 474 EQHNQDVNSLGLISARKTAEAVDILKLMSSTYLVALCQAIDLRHLEENLKSAVKNTVSQV 533

Query: 546 AKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALN 605
           AKK LT GA+GELHPSRFCEKDLLK  DRE VF+YIDDPCSATYPLMQKLRQVLVEHAL 
Sbjct: 534 AKKTLTTGANGELHPSRFCEKDLLKVVDREPVFSYIDDPCSATYPLMQKLRQVLVEHALA 593

Query: 606 NGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRL 665
           NGE EK A++S+F+KI AFEEELK  LPKEVE AR+  ENG+  IPNRIKECRSYPLYR 
Sbjct: 594 NGEAEKNASTSVFRKIGAFEEELKAALPKEVEAAREAYENGTAPIPNRIKECRSYPLYRF 653

Query: 666 VREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 718
           VREELG+  LTGEK  SPGEEFDKVF A+CQGK+IDP+LECL+EWNGAPLPIC
Sbjct: 654 VREELGTELLTGEKTRSPGEEFDKVFDAICQGKLIDPLLECLKEWNGAPLPIC 706

Length = 706
>gnl|CDD|130293 TIGR01226, phe_am_lyase, phenylalanine ammonia-lyase Back     alignment and domain information
>gnl|CDD|215800 pfam00221, Lyase_aromatic, Aromatic amino acid lyase Back     alignment and domain information
>gnl|CDD|176460 cd00332, PAL-HAL, Phenylalanine ammonia-lyase (PAL) and histidine ammonia-lyase (HAL) Back     alignment and domain information
>gnl|CDD|225533 COG2986, HutH, Histidine ammonia-lyase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|236484 PRK09367, PRK09367, histidine ammonia-lyase; Provisional Back     alignment and domain information
>gnl|CDD|200086 TIGR01225, hutH, histidine ammonia-lyase Back     alignment and domain information
>gnl|CDD|163544 TIGR03832, Tyr_2_3_mutase, tyrosine 2,3-aminomutase Back     alignment and domain information
>gnl|CDD|176466 cd01594, Lyase_I_like, Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 718
PLN02457706 phenylalanine ammonia-lyase 100.0
KOG0222715 consensus Phenylalanine and histidine ammonia-lyas 100.0
TIGR01226680 phe_am_lyase phenylalanine ammonia-lyase. Members 100.0
COG2986498 HutH Histidine ammonia-lyase [Amino acid transport 100.0
TIGR01225506 hutH histidine ammonia-lyase. This enzyme deaminat 100.0
TIGR03832507 Tyr_2_3_mutase tyrosine 2,3-aminomutase. Members o 100.0
PRK09367500 histidine ammonia-lyase; Provisional 100.0
PF00221473 Lyase_aromatic: Aromatic amino acid lyase; InterPr 100.0
cd00332444 PAL-HAL Phenylalanine ammonia-lyase (PAL) and hist 100.0
cd01594231 Lyase_I_like Lyase class I_like superfamily: conta 99.79
PLN02972 763 Histidyl-tRNA synthetase 95.06
>PLN02457 phenylalanine ammonia-lyase Back     alignment and domain information 
Probab=100.00  E-value=1e-210  Score=1775.36  Aligned_cols=695  Identities=86%  Similarity=1.273  Sum_probs=675.0

Q ss_pred             ccccccCCCCCCCCCCCCHHHHHHHhhcCcHHHHHHHHhhcCCCeEEEcCCCcCHHHHHHHHcC---CCceeeCHHHHHH
Q 005031           17 EGLCKNNNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATS---STNVELSESAREG   93 (718)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~i~l~G~~Lti~~v~avA~~---~~~v~Ls~~a~~r   93 (718)
                      +.+|+..      .|||||++||++|+|||+||||+|+++|++..|+|||.+||++||++||++   +++|++++++++|
T Consensus         7 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~G~~Lti~~V~aVA~~~~~~~~V~ls~~a~~r   80 (706)
T PLN02457          7 EGFCIGG------ADPLNWGKAAEALKGSHLDEVKRMVAEYRKPVVKLEGETLTIAQVAAVARRGAGGVRVELSESARAR   80 (706)
T ss_pred             cccccCC------CCCCcHHHHHHHhcCCcHHHHHHHHHHhcCceEEECCCCCCHHHHHHHHhcCCCCCeeeeCHHHHHH
Confidence            5689852      599999999999999999999999999999999999999999999999987   4889999999999


Q ss_pred             HHHHHHHHHHHHhcCCcccccccCCCCCCcccccchhhhHHHHHHHhhcccccCCCCCCCCCChHHHHHHHHHHHHHhcC
Q 005031           94 VKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQ  173 (718)
Q Consensus        94 i~~s~~~l~~~~~~g~~iYGVnTGfG~~a~~~~~~~~~LQ~~Lir~~~aGv~~~g~~~g~~lp~~~vRA~MlvRlNsL~~  173 (718)
                      |++|+++|++.+++|++|||||||||+++|+++++..+||+||||+|+||+++.+. .|++||+++|||+|++|+|+|++
T Consensus        81 i~~S~~~l~~~~~~g~~iYGVtTGfG~~~d~ri~~~~~LQ~nLirshaaGvg~~~~-~g~~lp~~~VRAaMliRlNsL~~  159 (706)
T PLN02457         81 VKASSDWVMESMMKGTDSYGVTTGFGATSHRRTKQGGALQRELIRFLNAGIFGTGE-SGHTLPASATRAAMLVRINTLLQ  159 (706)
T ss_pred             HHHHHHHHHHHHhcCCeeeeecCCCCCccCCchhHHHHHHHHHHHHHhcCcCCCCC-CCCCCCHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999986543 47999999999999999999999


Q ss_pred             CCCcCcHHHHHHHHHHHhCCCccccCCCCCCCCccCchhHHHHHHHhccCCCccccCCCCeeecHHHHHHHCCCCC--cc
Q 005031          174 GYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQEASKQAGFGF--FE  251 (718)
Q Consensus       174 G~SGVr~evle~L~~lLN~~i~P~VP~rGSVGASGDL~PLs~Ia~~L~G~~~~~~~~~~G~~~~a~eAL~~aGl~P--~~  251 (718)
                      ||||||||++|+|++|||+||+|+||++|||||||||+||||||++|+|+|+++++.++|+++++.|||+++||+|  ++
T Consensus       160 G~SGVr~evle~L~~lLN~~i~PvVP~~GSVGASGDL~PLAhIAl~L~Geg~~~~v~~~G~~~~a~eAL~~aGl~Pp~~~  239 (706)
T PLN02457        160 GYSGIRFEILEAITKLLNANVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVTPDGEKVTAAEAFKLAGIEGGFFE  239 (706)
T ss_pred             CCCCCCHHHHHHHHHHHhCcCcccCCCCCCcCccchHHHHHHHHHHHcCCCCceeeccCCEEEcHHHHHHHcCCCCCCcC
Confidence            9999999999999999999999999999999999999999999999999999887778999999999999999997  99


Q ss_pred             CCCccchhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCChhhhhcCCCchHHHHHHHHHHHhcCCc
Q 005031          252 LQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSS  331 (718)
Q Consensus       252 L~pKEGLALiNGTa~s~a~aalal~~a~~L~~~a~v~~Als~Eal~G~~~~fd~~ih~~RphpGQ~e~A~~ir~lL~gS~  331 (718)
                      |+|||||||||||++|+|+|+++++||++|+.++++++||++|+|+|++++|||++|++||||||+++|++||++|+||+
T Consensus       240 L~~KEGLALiNGTa~~~a~aalal~da~~L~~~a~v~~Als~Eal~G~~~~fdp~ih~~RpHpGQ~e~Aa~ir~lL~GS~  319 (706)
T PLN02457        240 LQPKEGLALVNGTAVGSALASTVLFDANVLAVLAEVLSAVFCEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSS  319 (706)
T ss_pred             CCCCcchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhcCHHHHhcCCChhHHHHHHHHHHHhCcCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhcccCCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHhccCCCcccccCCCccccCCCCCCchhhhHH
Q 005031          332 YVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSM  411 (718)
Q Consensus       332 ~~~~~~~~~~~d~~~~~~QD~YSlR~~PQvlG~~~d~l~~a~~~ie~ElNS~tDNPlI~~~~~~vl~GGNF~~~~va~am  411 (718)
                      +++...+.|..+|.++++||||||||+||||||++|+|++++++|++||||+|||||||+++++++|||||||+||+++|
T Consensus       320 l~~~~~~~~~~~~~~~~vQD~YSLRc~PQvlGp~~d~l~~a~~~ie~ElNS~tDNPLId~~~~~vl~GGNF~g~~va~am  399 (706)
T PLN02457        320 YMKAAKKLHETDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKSIEREINSVNDNPLIDVARDKALHGGNFQGTPIGVSM  399 (706)
T ss_pred             cchhhhhccccccccCcCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHhccCCCCceeCCCCceeeCCCCCchHHHHHH
Confidence            98776656666766789999999999999999999999999999999999999999999988899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHhhccCCCcccccCccccchh
Q 005031          412 DNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQD  491 (718)
Q Consensus       412 D~l~lAla~lg~l~~~q~~~Lvn~~~n~GLP~~L~~~~~p~l~~Gf~~~qi~~aal~sEl~~LA~PvS~~~~sae~~nqD  491 (718)
                      |++++||+++|+++|||+++|+||.+|+|||+||+++++||++||||++||+||||+|||++||||+|+|++|+++||||
T Consensus       400 D~l~lAla~lg~ls~rr~~~Lvnp~~n~GLP~fL~~~~~pgl~~Gf~~~q~taAAl~sEl~~LA~PvS~~~~pt~~~nED  479 (706)
T PLN02457        400 DNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQYLANPVTNHVQSAEQHNQD  479 (706)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCccccCCCCHhhcCCCCCCcccccHHHHHHHHHHHHHHHHhcCCCccCcccccCCccc
Confidence            99999999999999999999999999999999999767999999999999999999999999999999999999999999


Q ss_pred             hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhcCCCCCCCCCcCCHHHHHHH
Q 005031          492 VNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKA  571 (718)
Q Consensus       492 v~Sma~~sark~~~ave~l~~~~A~ell~a~QAidLR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dr~~~~dl~~~  571 (718)
                      |||||++||||+.+++|++++|+||||+++|||+|||+++++|++.++++++++|+++++++.++++++.||+++|+.++
T Consensus       480 ~~Smg~~sArkt~e~ve~l~~~lAieLl~a~QAlDLR~~~~~l~~~~~~~~~~vr~~v~~~~~~~~~~~~~~~~~~l~~~  559 (706)
T PLN02457        480 VNSLGLISARKTAEAVDILKLMSSTYLVALCQAIDLRHLEENLKSAVKNTVSQVAKKTLTTGANGELHPSRFCEKDLLKV  559 (706)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHccccCCCccccccccCHHHHHHH
Confidence            99999999999999999999999999999999999999989999999999999999999999999999999999999999


Q ss_pred             HhhcchhhhccCCCCCchHHHHHHHHHHHHHHhhcCCCCCCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhcCCCCCC
Q 005031          572 ADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIP  651 (718)
Q Consensus       572 ~~~~~~~~~~~~~~~~~~~l~~~l~~vl~d~~l~~~~~~~~~~~~~~~~I~~f~~~l~~~l~~~~~~~R~~f~~g~~~~~  651 (718)
                      ++++++|+|+||||+.+|++|+|++++||+|++++++++++..+++|++|..|+++++++|+++|+++|++|++|+.++|
T Consensus       560 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~~~l~~~~~~~r~~~~~~~~~~~  639 (706)
T PLN02457        560 VDREPVFSYIDDPCSATYPLMQKLRQVLVEHALANGEAEKNASTSVFRKIGAFEEELKAALPKEVEAAREAYENGTAPIP  639 (706)
T ss_pred             HhhcceecccCCCcccchhHHHHHHHHHHHHHhhCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence            99999999999999999999999999999999998877788888999999999999999999999999999999998899


Q ss_pred             CcccccccchhhHHhhhhcCcccccCccccCCCchhHHHHHHHhcCcchhhHHHhhhhccCCCCCCC
Q 005031          652 NRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC  718 (718)
Q Consensus       652 ~~ilg~~S~~LY~FVR~eLGv~~h~Ge~~~t~G~~is~i~~ai~~g~~~~~l~~cl~~~~~~~~~~~  718 (718)
                      |+|++|||||||+|||+|||||||+|++++|||+||||||+|||+|+++||||+||++|+|+|+|||
T Consensus       640 ~ri~~~~s~~lY~fVR~~L~~~~~~g~~~~~~g~~~~~v~~ai~~g~~~~~l~~~~~~~~~~~~~~~  706 (706)
T PLN02457        640 NRIKECRSYPLYRFVREELGTELLTGEKTRSPGEEFDKVFDAICQGKLIDPLLECLKEWNGAPLPIC  706 (706)
T ss_pred             chhhcCcchHHHHHHHHHcCCccccCCCCCCCCccHHHHHHHHHCCccHHHHHHHHHhcCCCCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999998

>KOG0222 consensus Phenylalanine and histidine ammonia-lyase [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>TIGR01226 phe_am_lyase phenylalanine ammonia-lyase Back     alignment and domain information
>COG2986 HutH Histidine ammonia-lyase [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR01225 hutH histidine ammonia-lyase Back     alignment and domain information
>TIGR03832 Tyr_2_3_mutase tyrosine 2,3-aminomutase Back     alignment and domain information
>PRK09367 histidine ammonia-lyase; Provisional Back     alignment and domain information
>PF00221 Lyase_aromatic: Aromatic amino acid lyase; InterPro: IPR001106 This entry represents phenylalanine ammonia-lyase (PAL; 4 Back     alignment and domain information
>cd00332 PAL-HAL Phenylalanine ammonia-lyase (PAL) and histidine ammonia-lyase (HAL) Back     alignment and domain information
>cd01594 Lyase_I_like Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions Back     alignment and domain information
>PLN02972 Histidyl-tRNA synthetase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query718
1w27_A714 Phenylalanine Ammonia-Lyase (Pal) From Petroselinum 0.0
3nz4_A696 Crystal Structure Of A Taxus Phenylalanine Aminomut 1e-167
2yii_A705 Manipulating The Regioselectivity Of Phenylalanine 1e-167
4baa_A705 Redesign Of A Phenylalanine Aminomutase Into A Beta 1e-166
1y2m_A716 Crystal Structure Of Phenylalanine Ammonia-Lyase Fr 1e-91
1t6j_A714 Crystal Structure Of Phenylalanine Ammonia Lyase Fr 1e-88
2nyf_A567 Crystal Structure Of Phenylalanine Ammonia-Lyase Fr 4e-72
2nyn_A565 Crystal Structure Of Phenylalanine Ammonia-Lyase Fr 2e-70
3czo_A539 Crystal Structure Of Double Mutant Phenylalanine Am 4e-66
2o78_A521 Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides 3e-51
2o6y_A521 Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides 3e-50
3kdy_A537 X-Ray Crystal Structure Of Tyrosine Aminomutase Mut 2e-49
2qve_A526 Crystal Structure Of Sgtam Bound To Mechanism Based 6e-49
2rjr_A537 Substrate Mimic Bound To Sgtam Length = 537 7e-49
1gk3_A509 Histidine Ammonia-Lyase (Hal) Mutant D145a From Pse 8e-49
2ohy_A539 X-Ray Crystal Structure Of Tyrosine Aminomutase Fro 9e-49
1gk2_A509 Histidine Ammonia-Lyase (Hal) Mutant F329g From Pse 1e-48
3kdz_A537 X-Ray Crystal Structure Of A Tyrosine Aminomutase M 2e-48
1gkm_A507 Histidine Ammonia-Lyase (Hal) From Pseudomonas Puti 8e-47
1gkj_A507 Histidine Ammonia-Lyase (Hal) Mutant Y280f From Pse 3e-46
3unv_A547 Pantoea Agglomerans Phenylalanine Aminomutase Lengt 4e-46
1eb4_A507 Histidine Ammonia-Lyase (Hal) Mutant F329a From Pse 1e-45
>pdb|1W27|A Chain A, Phenylalanine Ammonia-Lyase (Pal) From Petroselinum Crispum Length = 714 Back     alignment and structure 
Iteration: 1

 Score = 1224 bits (3167), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 594/720 (82%), Positives = 645/720 (89%), Gaps = 16/720 (2%)
Query: 4   GATTENGHQNGGLEGLCKNNNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVN 63
           GATT NGH NG     C          D L WG+ AE + GSHL+EVK+MVAEYRKPVV 
Sbjct: 6   GATT-NGHVNGNGMDFCMKTE------DPLYWGIAAEAMTGSHLDEVKKMVAEYRKPVVK 58
Query: 64  LGGETLTVAQVAAIAT---SSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGA 120
           LGGETLT++QVAAI+    S   VELSE+AR GVKASSDWVM+SMNKGTDSYGVTTGFGA
Sbjct: 59  LGGETLTISQVAAISARDGSGVTVELSEAARAGVKASSDWVMDSMNKGTDSYGVTTGFGA 118
Query: 121 TSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRF 180
           TSHRRTK GGALQKELIRFLNAGIFGNG  S +TLPHSATRAAMLVR+NTLLQGYSGIRF
Sbjct: 119 TSHRRTKQGGALQKELIRFLNAGIFGNG--SDNTLPHSATRAAMLVRINTLLQGYSGIRF 176
Query: 181 EILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQE 240
           EILEAITK LN NITPCLPLRGTIT   DLVPLSYIAGLLTGRPNSKA GP G I+  +E
Sbjct: 177 EILEAITKFLNQNITPCLPLRGTITX--DLVPLSYIAGLLTGRPNSKAVGPTGVILSPEE 234
Query: 241 ASKQAGF--GFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQG 298
           A K AG   GFFELQPKEGLALVNGTAVGSG+ASMVLFEAN LA+L+E++SAIFAEVMQG
Sbjct: 235 AFKLAGVEGGFFELQPKEGLALVNGTAVGSGMASMVLFEANILAVLAEVMSAIFAEVMQG 294
Query: 299 KPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTS 358
           KPEFTDHLTHKLKHHPGQIEAAAIMEHILDGS+YV AA+KLHE+DPLQKPKQDRYALRTS
Sbjct: 295 KPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSAYVKAAQKLHEMDPLQKPKQDRYALRTS 354
Query: 359 PQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAI 418
           PQWLGPQIEVIR +TK IEREINSVNDNPLIDVSRNKA+HGGNFQGTPIGVSMDNTRLAI
Sbjct: 355 PQWLGPQIEVIRSSTKMIEREINSVNDNPLIDVSRNKAIHGGNFQGTPIGVSMDNTRLAI 414
Query: 419 AAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPV 478
           AAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPV
Sbjct: 415 AAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPV 474
Query: 479 TNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTV 538
           TNHVQSAEQHNQDVNSLGLISSRKT+EAV+ILKLMS+TFLV LCQAIDLRHLEENLK TV
Sbjct: 475 TNHVQSAEQHNQDVNSLGLISSRKTSEAVEILKLMSTTFLVGLCQAIDLRHLEENLKSTV 534
Query: 539 KNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQV 598
           KNTVS VAK+VLT+G +GELHPSRFCEKDLL+  DRE++FAYIDDPCSATYPLMQKLRQ 
Sbjct: 535 KNTVSSVAKRVLTMGVNGELHPSRFCEKDLLRVVDREYIFAYIDDPCSATYPLMQKLRQT 594
Query: 599 LVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECR 658
           LVEHAL NG+NE+  ++SIFQKIA FE+ELK +LPKEVE+AR  +E+G+P IPNRI+ECR
Sbjct: 595 LVEHALKNGDNERNLSTSIFQKIATFEDELKALLPKEVESARAALESGNPAIPNRIEECR 654
Query: 659 SYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC 718
           SYPLY+ VR+ELG+ +LTGEKVTSPGEEF+KVF AM +G+IIDP+LECL  WNGAPLPIC
Sbjct: 655 SYPLYKFVRKELGTEYLTGEKVTSPGEEFEKVFIAMSKGEIIDPLLECLESWNGAPLPIC 714
>pdb|3NZ4|A Chain A, Crystal Structure Of A Taxus Phenylalanine Aminomutase Length = 696 Back     alignment and structure
>pdb|2YII|A Chain A, Manipulating The Regioselectivity Of Phenylalanine Aminomutase: New Insights Into The Reaction Mechanism Of Mio-dependent Enzymes From Structure-guided Directed Evolution Length = 705 Back     alignment and structure
>pdb|4BAA|A Chain A, Redesign Of A Phenylalanine Aminomutase Into A Beta- Phenylalanine Ammonia Lyase Length = 705 Back     alignment and structure
>pdb|1Y2M|A Chain A, Crystal Structure Of Phenylalanine Ammonia-Lyase From Yeast Rhododporidium Toruloides Length = 716 Back     alignment and structure
>pdb|1T6J|A Chain A, Crystal Structure Of Phenylalanine Ammonia Lyase From Rhodosporidium Toruloides Length = 714 Back     alignment and structure
>pdb|2NYF|A Chain A, Crystal Structure Of Phenylalanine Ammonia-Lyase From Nostoc Punctiforme Length = 567 Back     alignment and structure
>pdb|2NYN|A Chain A, Crystal Structure Of Phenylalanine Ammonia-Lyase From Anabaena Variabilis Length = 565 Back     alignment and structure
>pdb|3CZO|A Chain A, Crystal Structure Of Double Mutant Phenylalanine Ammonia-Lyase From Anabaena Variabilis Length = 539 Back     alignment and structure
>pdb|2O78|A Chain A, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides (his89phe Variant) Complexed With Cinnamic Acid Length = 521 Back     alignment and structure
>pdb|2O6Y|A Chain A, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides Length = 521 Back     alignment and structure
>pdb|3KDY|A Chain A, X-Ray Crystal Structure Of Tyrosine Aminomutase Mutant Construct Length = 537 Back     alignment and structure
>pdb|2QVE|A Chain A, Crystal Structure Of Sgtam Bound To Mechanism Based Inhibitor Length = 526 Back     alignment and structure
>pdb|2RJR|A Chain A, Substrate Mimic Bound To Sgtam Length = 537 Back     alignment and structure
>pdb|1GK3|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant D145a From Pseudomonas Putida Length = 509 Back     alignment and structure
>pdb|2OHY|A Chain A, X-Ray Crystal Structure Of Tyrosine Aminomutase From Streptomyces Globisporus Length = 539 Back     alignment and structure
>pdb|1GK2|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant F329g From Pseudomonas Putida Length = 509 Back     alignment and structure
>pdb|3KDZ|A Chain A, X-Ray Crystal Structure Of A Tyrosine Aminomutase Mutant Construct With Bound Ligand Length = 537 Back     alignment and structure
>pdb|1GKM|A Chain A, Histidine Ammonia-Lyase (Hal) From Pseudomonas Putida Inhibited With L-Cysteine Length = 507 Back     alignment and structure
>pdb|1GKJ|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant Y280f From Pseudomonas Putida Length = 507 Back     alignment and structure
>pdb|3UNV|A Chain A, Pantoea Agglomerans Phenylalanine Aminomutase Length = 547 Back     alignment and structure
>pdb|1EB4|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant F329a From Pseudomonas Putida Length = 507 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query718
1w27_A714 Phenylalanine ammonia-lyase 1; phenylpropanoid met 0.0
2yii_A705 Phenylalanine ammonia-lyase; HET: MDO; 2.18A {Taxu 0.0
1y2m_A716 Phenylalanine ammonia-lyase; alpha helices; HET: M 0.0
3unv_A547 ADMH; MIO, lyase; HET: KWS SFE PHE; 1.54A {Pantoea 0.0
2qve_A526 Tyrosine aminomutase; MIO, enediyne, transferase; 0.0
2o6y_A521 Putative histidine ammonia-lyase; methylidene imid 0.0
1gkm_A507 Histidase, HAL, histidine ammonia-lyase; histidine 0.0
2nyn_A565 Phenylalanine/histidine ammonia-lyase; methylidene 0.0
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-07
>1w27_A Phenylalanine ammonia-lyase 1; phenylpropanoid metabolism, MIO; HET: MDO; 1.7A {Petroselinum crispum} SCOP: a.127.1.2 Length = 714 Back     alignment and structure
 Score =  990 bits (2560), Expect = 0.0
 Identities = 591/724 (81%), Positives = 646/724 (89%), Gaps = 16/724 (2%)

Query: 1   MERGAT-TENGHQNGGLEGLCKNNNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRK 59
           ME G   T NGH NG     C          D L WG+ AE + GSHL+EVK+MVAEYRK
Sbjct: 1   MENGNGATTNGHVNGNGMDFCMKTE------DPLYWGIAAEAMTGSHLDEVKKMVAEYRK 54

Query: 60  PVVNLGGETLTVAQVAAIATSSTN---VELSESAREGVKASSDWVMESMNKGTDSYGVTT 116
           PVV LGGETLT++QVAAI+    +   VELSE+AR GVKASSDWVM+SMNKGTDSYGVTT
Sbjct: 55  PVVKLGGETLTISQVAAISARDGSGVTVELSEAARAGVKASSDWVMDSMNKGTDSYGVTT 114

Query: 117 GFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYS 176
           GFGATSHRRTK GGALQKELIRFLNAGIFGNG++  +TLPHSATRAAMLVR+NTLLQGYS
Sbjct: 115 GFGATSHRRTKQGGALQKELIRFLNAGIFGNGSD--NTLPHSATRAAMLVRINTLLQGYS 172

Query: 177 GIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEII 236
           GIRFEILEAITK LN NITPCLPLRGTI  + DLVPLSYIAGLLTGRPNSKA GP G I+
Sbjct: 173 GIRFEILEAITKFLNQNITPCLPLRGTI--TXDLVPLSYIAGLLTGRPNSKAVGPTGVIL 230

Query: 237 DAQEASKQAGF--GFFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAE 294
             +EA K AG   GFFELQPKEGLALVNGTAVGSG+ASMVLFEAN LA+L+E++SAIFAE
Sbjct: 231 SPEEAFKLAGVEGGFFELQPKEGLALVNGTAVGSGMASMVLFEANILAVLAEVMSAIFAE 290

Query: 295 VMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYA 354
           VMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGS+YV AA+KLHE+DPLQKPKQDRYA
Sbjct: 291 VMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSAYVKAAQKLHEMDPLQKPKQDRYA 350

Query: 355 LRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNT 414
           LRTSPQWLGPQIEVIR +TK IEREINSVNDNPLIDVSRNKA+HGGNFQGTPIGVSMDNT
Sbjct: 351 LRTSPQWLGPQIEVIRSSTKMIEREINSVNDNPLIDVSRNKAIHGGNFQGTPIGVSMDNT 410

Query: 415 RLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFL 474
           RLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFL
Sbjct: 411 RLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFL 470

Query: 475 ANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENL 534
           ANPVTNHVQSAEQHNQDVNSLGLISSRKT+EAV+ILKLMS+TFLV LCQAIDLRHLEENL
Sbjct: 471 ANPVTNHVQSAEQHNQDVNSLGLISSRKTSEAVEILKLMSTTFLVGLCQAIDLRHLEENL 530

Query: 535 KHTVKNTVSQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQK 594
           K TVKNTVS VAK+VLT+G +GELHPSRFCEKDLL+  DRE++FAYIDDPCSATYPLMQK
Sbjct: 531 KSTVKNTVSSVAKRVLTMGVNGELHPSRFCEKDLLRVVDREYIFAYIDDPCSATYPLMQK 590

Query: 595 LRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRI 654
           LRQ LVEHAL NG+NE+  ++SIFQKIA FE+ELK +LPKEVE+AR  +E+G+P IPNRI
Sbjct: 591 LRQTLVEHALKNGDNERNLSTSIFQKIATFEDELKALLPKEVESARAALESGNPAIPNRI 650

Query: 655 KECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAP 714
           +ECRSYPLY+ VR+ELG+ +LTGEKVTSPGEEF+KVF AM +G+IIDP+LECL  WNGAP
Sbjct: 651 EECRSYPLYKFVRKELGTEYLTGEKVTSPGEEFEKVFIAMSKGEIIDPLLECLESWNGAP 710

Query: 715 LPIC 718
           LPIC
Sbjct: 711 LPIC 714
>2yii_A Phenylalanine ammonia-lyase; HET: MDO; 2.18A {Taxus wallichiana var} PDB: 3nz4_A* Length = 705 Back     alignment and structure
>1y2m_A Phenylalanine ammonia-lyase; alpha helices; HET: MSE; 1.60A {Rhodosporidium toruloides} PDB: 1t6j_A* 1t6p_A* Length = 716 Back     alignment and structure
>3unv_A ADMH; MIO, lyase; HET: KWS SFE PHE; 1.54A {Pantoea agglomerans} Length = 547 Back     alignment and structure
>2qve_A Tyrosine aminomutase; MIO, enediyne, transferase; HET: MDO 247; 2.00A {Streptomyces globisporus} PDB: 2rjr_A* 2rjs_A* 2ohy_A* 3kdz_A* 3kdy_A* Length = 526 Back     alignment and structure
>2o6y_A Putative histidine ammonia-lyase; methylidene imidazolone prosthetic group; HET: MDO; 1.50A {Rhodobacter sphaeroides} PDB: 2o7b_A* 2o7d_A* 2o7e_A* 2o78_A* 2o7f_A* Length = 521 Back     alignment and structure
>1gkm_A Histidase, HAL, histidine ammonia-lyase; histidine degradation; HET: MDO; 1.0A {Pseudomonas putida} SCOP: a.127.1.2 PDB: 1b8f_A* 1gkj_A* 1eb4_A* 1gk3_A 1gk2_A Length = 507 Back     alignment and structure
>2nyn_A Phenylalanine/histidine ammonia-lyase; methylidene imidazolone prosthetic group; HET: MDO; 1.90A {Anabaena variabilis} PDB: 3czo_A* 2nyf_A* Length = 565 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query718
1w27_A714 Phenylalanine ammonia-lyase 1; phenylpropanoid met 100.0
2yii_A705 Phenylalanine ammonia-lyase; HET: MDO; 2.18A {Taxu 100.0
1y2m_A716 Phenylalanine ammonia-lyase; alpha helices; HET: M 100.0
3unv_A547 ADMH; MIO, lyase; HET: KWS SFE PHE; 1.54A {Pantoea 100.0
2nyn_A565 Phenylalanine/histidine ammonia-lyase; methylidene 100.0
1gkm_A507 Histidase, HAL, histidine ammonia-lyase; histidine 100.0
2o6y_A521 Putative histidine ammonia-lyase; methylidene imid 100.0
2qve_A526 Tyrosine aminomutase; MIO, enediyne, transferase; 100.0
>1w27_A Phenylalanine ammonia-lyase 1; phenylpropanoid metabolism, MIO; HET: MDO; 1.7A {Petroselinum crispum} SCOP: a.127.1.2 Back     alignment and structure
Probab=100.00  E-value=8.9e-203  Score=1715.59  Aligned_cols=704  Identities=84%  Similarity=1.278  Sum_probs=663.3

Q ss_pred             CcccccCCCCCCcccccccCCCCCCCCCCCCHHHHHHHhhcCcHHHHHHHHhhcCCCeEEEcCCCcCHHHHHHHHcC---
Q 005031            4 GATTENGHQNGGLEGLCKNNNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATS---   80 (718)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~i~l~G~~Lti~~v~avA~~---   80 (718)
                      |+|| ||+.++...++|+..      .|||||++||++|+|||+|+|+||+++|+.+.|+|+|.+||++||++||++   
T Consensus         6 ~~~~-~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~l~g~~Ltl~dv~aVa~~~~~   78 (714)
T 1w27_A            6 GATT-NGHVNGNGMDFCMKT------EDPLYWGIAAEAMTGSHLDEVKKMVAEYRKPVVKLGGETLTISQVAAISARDGS   78 (714)
T ss_dssp             --------------------------CCTTSHHHHHHTTCSCHHHHHHHHHHHHTCSEEEECSSCCCHHHHHHHHCCSCC
T ss_pred             CCcc-CCCCCCcccccccCC------CCCCChHHhhhhccCCHHHHHHHHHHHhcCCeEEECCCCCCHHHHHHHHhcCCC
Confidence            4555 445655557799863      599999999999999999999999999988999999999999999999987   


Q ss_pred             CCceeeCHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCcccccchhhhHHHHHHHhhcccccCCCCCCCCCChHHH
Q 005031           81 STNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSAT  160 (718)
Q Consensus        81 ~~~v~Ls~~a~~ri~~s~~~l~~~~~~g~~iYGVnTGfG~~a~~~~~~~~~LQ~~Lir~~~aGv~~~g~~~g~~lp~~~v  160 (718)
                      +++|+|+|++++||++|+++|++.+++|++|||||||||+++|+++++..+||+||||+|+||++|.|+  +++||+++|
T Consensus        79 ~~~v~ls~~a~~rI~~sr~~v~~~~~~g~~VYGVnTGFG~la~~~~~~~~~LQ~nLirsHa~Gv~G~~~--~~~lp~~~v  156 (714)
T 1w27_A           79 GVTVELSEAARAGVKASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGS--DNTLPHSAT  156 (714)
T ss_dssp             CCEEEECGGGHHHHHHHHHHHHHHHSTTTTSCSCCCSSCTTSCSSSSSCSHHHHHHHHHHCCCCCCSSS--TTBCCHHHH
T ss_pred             CCeEeeCHHHHHHHHHHHHHHHHHHhcCCeeccccCCCCCcccccHHHHHHHHHHHHHHHhCCcCCCCC--CCCCCHHHH
Confidence            599999999999999999999999999999999999999999999999999999999999999953211  249999999


Q ss_pred             HHHHHHHHHHhcCCCCcCcHHHHHHHHHHHhCCCccccCCCCCCCCccCchhHHHHHHHhccCCCccccCCCCeeecHHH
Q 005031          161 RAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIIDAQE  240 (718)
Q Consensus       161 RA~MlvRlNsL~~G~SGVr~evle~L~~lLN~~i~P~VP~rGSVGASGDL~PLs~Ia~~L~G~~~~~~~~~~G~~~~a~e  240 (718)
                      ||+|++|+|+|++||||||||++|+|++|||+||+|+||++||||  |||+||||||++|+|||+++++.|+|+++|+.|
T Consensus       157 RA~MllRlnsL~~G~SGVr~evve~L~~lLN~gi~P~VP~~GSVG--GDLaPLAhial~LiGeg~~~~v~~~G~~~~a~e  234 (714)
T 1w27_A          157 RAAMLVRINTLLQGYSGIRFEILEAITKFLNQNITPCLPLRGTIT--XDLVPLSYIAGLLTGRPNSKAVGPTGVILSPEE  234 (714)
T ss_dssp             HHHHHHHHHTTTTSCSCCCHHHHHHHHHHHHTTCEECCBSSCCCS--SCHHHHHHHHHHHTTCTTCCEECTTSCEECHHH
T ss_pred             HHHHHHHHHHHccCCCCCCHHHHHHHHHHHhCCCccccCCCCCcc--ccchHHHHHHHHHhCCCcccccccCCccccHHH
Confidence            999999999999999999999999999999999999999999999  999999999999999999877789999999999


Q ss_pred             HHHHCCCC--CccCCCccchhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCChhhhhcCCCchHHH
Q 005031          241 ASKQAGFG--FFELQPKEGLALVNGTAVGSGLASMVLFEANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIE  318 (718)
Q Consensus       241 AL~~aGl~--P~~L~pKEGLALiNGTa~s~a~aalal~~a~~L~~~a~v~~Als~Eal~G~~~~fd~~ih~~RphpGQ~e  318 (718)
                      ||+++||+  |++|+|||||||||||++|+|+|++++++|++|++++++++||++|+|+|++++|||++|++||||||++
T Consensus       235 AL~~aGl~~~Pl~L~~KEGLALiNGTa~~ta~aalal~~a~~L~~~A~v~~Als~Eal~G~~~~fd~~ih~~RpHpGQ~~  314 (714)
T 1w27_A          235 AFKLAGVEGGFFELQPKEGLALVNGTAVGSGMASMVLFEANILAVLAEVMSAIFAEVMQGKPEFTDHLTHKLKHHPGQIE  314 (714)
T ss_dssp             HHHHHTCSSSCCCCCTTHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGGCHHHHHTTCCHHHHH
T ss_pred             HHHHcCCCCCCCCCCCcchhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhhChHHHhhCCChhHHH
Confidence            99999999  9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCccchhhhhhcccCCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHhccCCCcccccCCCcccc
Q 005031          319 AAAIMEHILDGSSYVNAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALH  398 (718)
Q Consensus       319 ~A~~ir~lL~gS~~~~~~~~~~~~d~~~~~~QD~YSlR~~PQvlG~~~d~l~~a~~~ie~ElNS~tDNPlI~~~~~~vl~  398 (718)
                      +|++||++|+||+++....+.+..|+.++++||||||||+||||||++|+|++++++|++||||+|||||||+++++++|
T Consensus       315 ~A~~ir~lL~gS~l~~~~~~~~~~~~~~~rvQD~YSlRc~PQV~Ga~~d~l~~a~~~le~ElNS~tDNPlI~~~~g~v~s  394 (714)
T 1w27_A          315 AAAIMEHILDGSAYVKAAQKLHEMDPLQKPKQDRYALRTSPQWLGPQIEVIRSSTKMIEREINSVNDNPLIDVSRNKAIH  394 (714)
T ss_dssp             HHHHHHHHHHTCSSCCCCCSSCSSCCCCSSSCCCHHHHTHHHHHHHHHHHHHHHHHHHHHHTTSCCCSSEEETTTTEEEC
T ss_pred             HHHHHHHHhCccchhhhcccccccCcccCcCcCcceecchhhhhHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCCceee
Confidence            99999999999999876544445566667999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHHhhccCCC
Q 005031          399 GGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPV  478 (718)
Q Consensus       399 GGNF~~~~va~amD~l~lAla~lg~l~~~q~~~Lvn~~~n~GLP~~L~~~~~p~l~~Gf~~~qi~~aal~sEl~~LA~Pv  478 (718)
                      ||||||+||+++||++++|+++||+++|||+++|+||.+|+|||+||+++++||+|||||++||++|||++|||+||||+
T Consensus       395 GGNFhg~pvA~AmD~L~iAla~lg~lserR~~~Lvdp~~~~GLP~fL~~~~~~glnsGfmi~Q~taAal~sEnk~LA~Pa  474 (714)
T 1w27_A          395 GGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPV  474 (714)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTSTTCCGGGCCSSCGGGCCTTHHHHHHHHHHHHHHHHHTSCS
T ss_pred             CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCChhhcCCCCCCcccchHHHHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999999999999999976789999999999999999999999999999


Q ss_pred             cccccCccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhcCCCCCC
Q 005031          479 TNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVSQVAKKVLTVGASGEL  558 (718)
Q Consensus       479 S~~~~sae~~nqDv~Sma~~sark~~~ave~l~~~~A~ell~a~QAidLR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  558 (718)
                      |+|++|+++|||||||||++||||+.+++|++++|+||||+++|||+|||++++++++.++++++++|+++++++.+|++
T Consensus       475 Svds~pts~~qEDhvSmg~~aArk~~~~venl~~vlAiELl~a~QAiDlR~~~~~~~~~~~~~~~~~r~~v~~~~~~~~~  554 (714)
T 1w27_A          475 TNHVQSAEQHNQDVNSLGLISSRKTSEAVEILKLMSTTFLVGLCQAIDLRHLEENLKSTVKNTVSSVAKRVLTMGVNGEL  554 (714)
T ss_dssp             TTCCCCBTTTTBSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCBTTTBCC
T ss_pred             ccCCccccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccCCCccc
Confidence            99999999999999999999999999999999999999999999999999989999999999999999999999999999


Q ss_pred             CCCcCCHHHHHHHHhhcchhhhccCCCCCchHHHHHHHHHHHHHHhhcCCCCCCccchhhhhHHHHHHHHHhhhHHHHHH
Q 005031          559 HPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVEN  638 (718)
Q Consensus       559 ~~dr~~~~dl~~~~~~~~~~~~~~~~~~~~~~l~~~l~~vl~d~~l~~~~~~~~~~~~~~~~I~~f~~~l~~~l~~~~~~  638 (718)
                      ++.||+++|+.++++++++|+|++|||+.+||+|+|++++||||++++++.+++..+++|++|..|+++++++|+++|++
T Consensus       555 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~  634 (714)
T 1w27_A          555 HPSRFCEKDLLRVVDREYIFAYIDDPCSATYPLMQKLRQTLVEHALKNGDNERNLSTSIFQKIATFEDELKALLPKEVES  634 (714)
T ss_dssp             SSCHHHHHHHHHHHHHSCGGGTTTSTTCTTSHHHHHHHHHHHHHHHTSGGGGGSGGGCSGGGHHHHHHHHHHHHHHHHHH
T ss_pred             cccccCHHHHHHHHhhhHHHHhhcCcccccchHHHHHHHHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998776777777789999999999999999999999


Q ss_pred             HHHHhhcCCCCCCCcccccccchhhHHhhhhcCcccccCccccCCCchhHHHHHHHhcCcchhhHHHhhhhccCCCCCCC
Q 005031          639 ARQTVENGSPTIPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGAPLPIC  718 (718)
Q Consensus       639 ~R~~f~~g~~~~~~~ilg~~S~~LY~FVR~eLGv~~h~Ge~~~t~G~~is~i~~ai~~g~~~~~l~~cl~~~~~~~~~~~  718 (718)
                      +|++|++|+.++|++|++|||||||+|||+|||||||+|++++|||+||||||+|||+|+++||||+||++|+|+|+|||
T Consensus       635 ~r~~f~~g~~~~~~~i~~~~s~~lY~fVR~~Lg~~~~~g~~~~~~g~~~~~i~~ai~~g~~~~~l~~~~~~~~~~~~~~~  714 (714)
T 1w27_A          635 ARAALESGNPAIPNRIEECRSYPLYKFVRKELGTEYLTGEKVTSPGEEFEKVFIAMSKGEIIDPLLECLESWNGAPLPIC  714 (714)
T ss_dssp             HHHHHHTTCCSSCCGGGGSTTHHHHHHHHTTSCCCCCCTTSSCCHHHHHHHHHHHHHTTTTHHHHHHTTTTCCSSCCCCC
T ss_pred             HHHHHhcCCcCccchhhcCCchhHHHHHHHHcCCCcccCCCCCCCchhHHHHHHHHHCCccHHHHHHHHhhhcCCCCCCC
Confidence            99999999889999999999999999999999999999999999999999999999999999999999999999999999
>2yii_A Phenylalanine ammonia-lyase; HET: MDO; 2.18A {Taxus wallichiana var} PDB: 3nz4_A* Back     alignment and structure
>1y2m_A Phenylalanine ammonia-lyase; alpha helices; HET: MSE; 1.60A {Rhodosporidium toruloides} PDB: 1t6j_A* 1t6p_A* Back     alignment and structure
>3unv_A ADMH; MIO, lyase; HET: KWS SFE PHE; 1.54A {Pantoea agglomerans} Back     alignment and structure
>2nyn_A Phenylalanine/histidine ammonia-lyase; methylidene imidazolone prosthetic group; HET: MDO; 1.90A {Anabaena variabilis} PDB: 3czo_A* 2nyf_A* Back     alignment and structure
>1gkm_A Histidase, HAL, histidine ammonia-lyase; histidine degradation; HET: MDO; 1.0A {Pseudomonas putida} SCOP: a.127.1.2 PDB: 1b8f_A* 1gkj_A* 1eb4_A* 1gk3_A 1gk2_A Back     alignment and structure
>2o6y_A Putative histidine ammonia-lyase; methylidene imidazolone prosthetic group; HET: MDO; 1.50A {Rhodobacter sphaeroides} PDB: 2o7b_A* 2o7d_A* 2o7e_A* 2o78_A* 2o7f_A* Back     alignment and structure
>2qve_A Tyrosine aminomutase; MIO, enediyne, transferase; HET: MDO 247; 2.00A {Streptomyces globisporus} PDB: 2rjr_A* 2rjs_A* 2ohy_A* 3kdz_A* 3kdy_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 718
d1w27a_692 a.127.1.2 (A:) Phenylalanine ammonia-lyase, PAL {P 0.0
d1t6ja_678 a.127.1.2 (A:) Phenylalanine ammonia-lyase, PAL {F 0.0
d1gkma_509 a.127.1.2 (A:) Histidine ammonia-lyase (HAL) {Pseu 1e-154

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query718
d1w27a_692 Phenylalanine ammonia-lyase, PAL {Parsley (Petrose 100.0
d1t6ja_678 Phenylalanine ammonia-lyase, PAL {Fungi (Rhodospor 100.0
d1gkma_509 Histidine ammonia-lyase (HAL) {Pseudomonas putida 100.0