Citrus Sinensis ID: 005036

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------

MDSSSQDEKWVERDFLNLNESGVNSSSPKRQAEEEVEEFQGENVTTNREKRPKLETLNLSLSLPDVSLSLTASNALQNNVERPMPTRSIQSLAPSRDNTCSNDFTAASLSYSYSHPFSHNPSCSLTHNSTEYYEYSVGRDDQIWCGGEGTNGSVHSRFRPIGDGSVALNNHGGGGGGGGFSMIQGSRVMNKDSCNNSLYKTTSSDNLSFFPSELPARPRVETNSGDSRKKDSENLRGLESMDGGRARKLSRPERILREIVSEAIPIMAQIIQELSDETLESVKEYLKNLFLMSEKREELMALKKRLERRSDLSKETLSKCHKDQLAILVAVKMGLGSFLSAKIQLPVNKLVEIFLYMRCRNVNCQSILPVDDCDCKICSTNKGFCSSCMCPVCLNFDCANNTCSWVGCDVCSHWCHAACGIQRNLIKPGPSLKGPSGTSEMQFHCIGCGHASEMFGFVKDVFLHCAKDWGLDTFVKELDCVTKIFKGSNDFKGKELQKKAAELVSKLENKVMSPSEACNFIIRFFNNADSMSDFTASGTSLNDLIVTQASVQKDAIPIPPATSLPPKYTIYNMTSSSGRRDSMSNDLFKKDLIGDLKVEDEIRFGKLSKNDGFDSLESVVRIKEAEARMFQNKADEARREADEYKRMVCARTEKLEEEYAHKLSKLCLRETEERRRKKLEELKVLEDSHCDYLKMKRMQAEIAGLLERMEATKQQWV

ccccccccccHHccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccEEcccccHHHHHHHHHccccccccccccccccccccEEEEccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHcccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc

cccccccccEEEccccccccccccccccccccccHHEHcccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccEEccccccccccccccccccccccccEEccccccEEEccccccccccccccccccccEEEEccccccccccccHHcccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccEEccccHHHHHHHHHHHccHHHHHHHHHHccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcHHHHccccccccHHHHHHHHHHHHHHcHHHHHcccccccccEEEcccccccHccEEEEEEcccccccccEEEEEcccccHHHHHHHHHHcccccccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccccccccccHHHcccccccccccccccHHHHHHccHHHHHHHHHcccHHcHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc

MDSSSQDEKWVERDFLnlnesgvnssspkrqAEEEVEEfqgenvttnrekrpkletlnlslslpdvslsLTASNALqnnverpmptrsiqslapsrdntcsndftaaslsysyshpfshnpscslthnsteyyeysvgrddqiwcggegtngsvhsrfrpigdgsvalnnhggggggggfsmiqgsrvmnkdscnnslykttssdnlsffpselparprvetnsgdsrkkdsenlrglesmdggrarklsrpERILREIVSEAIPIMAQIIQELSDETLESVKEYLKNLFLMSEKREELMALKKRLERRSDLSKETLSKCHKDQLAILVAVKMGLGSflsakiqlpvNKLVEIFLYMRcrnvncqsilpvddcdckicstnkgfcsscmcpvclnfdcanntcswvgcdvcshwcHAACGiqrnlikpgpslkgpsgtsemqfhcigcghasemFGFVKDVFLHCAKDWGLDTFVKELDCVTKIfkgsndfkgKELQKKAAELVSKLENKVMSPSEACNFIIRFfnnadsmsdftasgtsLNDLIVTQAsvqkdaipippatslppkytiynmtsssgrrdsmsndlfkkdligdlkvedeirfgklskndgfdslESVVRIKEAEARMFQNKADEARREADEYKRMVCARTEKLEEEYAHKLSKLCLRETEERRRKKLEELKVLEDSHCDYLKMKRMQAEIAGLLERMEATKQQWV

MDSSSQDEKWVErdflnlnesgvnssspkrqaeeeveefqgenvttnrekrpklETLNLSLSLPDVSLSLTASNAlqnnverpmpTRSIQSLAPSRDNTCSNDFTAASLSYSYSHPFSHNPSCSLTHNSTEYYEYSVGRDDQIWCGGEGTNGSVHSRFRPIGDGSVALNNHGGGGGGGGFSMIQGSRVMNKDSCNNSLYKttssdnlsffpselparprvetnsgdsrkkdsenlrglesmdggrarklsrperILREIVSEAIPIMAQIIQELSDETLESVKEYLKNLFLMSEKREELMALKKRLerrsdlsketlskchkdQLAILVAVKMGLGSFLSAKIQLPVNKLVEIFLYMRCRNVNCQSILPVDDCDCKICSTNKGFCSSCMCPVCLNFDCANNTCSWVGCDVCSHWCHAACGIQRNLIKPGPSLKGPSGTSEMQFHCIGCGHASEMFGFVKDVFLHCAKDWGLDTFVKELDCVTKIFkgsndfkgkelQKKAAELVSKLENKVMSPSEACNFIIRFFNNADSMSDFTASGTSLNDLIVTQAsvqkdaipippatslppkyTIYNMTsssgrrdsmsnDLFKKDLIGDLKVEDEIrfgklskndgfdslESVVRIKEAEarmfqnkadearreadeyKRMVCARTEKLeeeyahklsklclreteerrrkkleelkvledshcdylkMKRMQAEIAGLLERMeatkqqwv

MDSSSQDEKWVERDFLNLNESGVNSSSPKRQAeeeveeFQGENVTTNREKRPKLETlnlslslpdvslslTASNALQNNVERPMPTRSIQSLAPSRDNTCSNDFTAASLSYSYSHPFSHNPSCSLTHNSTEYYEYSVGRDDQIWCGGEGTNGSVHSRFRPIGDGSVALNNHggggggggFSMIQGSRVMNKDSCNNSLYKTTSSDNLSFFPSELPARPRVETNSGDSRKKDSENLRGLESMDGGRARKLSRPERILREIVSEAIPIMAQIIQELSDETLESVKEYLKNLFLMSEKREELMALKKRLERRSDLSKETLSKCHKDQLAILVAVKMGLGSFLSAKIQLPVNKLVEIFLYMRCRNVNCQSILPVDDCDCKICSTNKGFCSSCMCPVCLNFDCANNTCSWVGCDVCSHWCHAACGIQRNLIKPGPSLKGPSGTSEMQFHCIGCGHASEMFGFVKDVFLHCAKDWGLDTFVKELDCVTKIFKGSNDFKGKELQKKAAELVSKLENKVMSPSEACNFIIRFFNNADSMSDFTASGTSLNDLIVTQASVQKDAIPIPPATSLPPKYTIYNMTSSSGRRDSMSNDLFKKDLIGDLKVEDEIRFGKLSKNDGFDSLESVVRIKEAEARMFQNKADEARREADEYKRMVCARTEKLEEEYAHKLSklclreteerrrkkleelkvleDSHCDYLKMKRMQAEIAGLLERMEATKQQWV

**************************************************************************************************************************CSLTHNSTEYYEYSVGRDDQIWCGGEGT********************************************************************************************************ILREIVSEAIPIMAQIIQELSDETLESVKEYLKNLFLM**************************KCHKDQLAILVAVKMGLGSFLSAKIQLPVNKLVEIFLYMRCRNVNCQSILPVDDCDCKICSTNKGFCSSCMCPVCLNFDCANNTCSWVGCDVCSHWCHAACGIQRNLIK*************MQFHCIGCGHASEMFGFVKDVFLHCAKDWGLDTFVKELDCVTKIFKGSNDF***********************SEACNFIIRFFNNADSMSDFTASGTSLNDLIVTQASVQK*AI***********YTIY****************FKKDLIGDLKVEDEIRFGKL****************************************VCA********YAHKLSKLCL***************VLEDSHCDYLKMKRMQAEIA**************

*********WVERD*************************************************PDVS**********************************NDFTAASLSYSYSHPFSHNPSCSLTHNSTEYYEYSVG***********************************************************************************************************************EIVSEAIPIMAQIIQELSDETLESVKEYLKNLFLMSEKREELMALKKR************SKCHKDQLAILVAVKMGLGSFLSAKIQLPVNKLVEIFLYMRCRNVNCQSILPVDDCDCKICSTNKGFCSSCMCPVCLNFDCANNTCSWVGCDVCSHWCHAACGIQRNLI***********TSEMQFHCIGCGHASEMFGFVKDVFLHCAKDWGLDTFVKELDCVTKI*******KG*ELQKKAAELVSKLE******SEACNFIIRFFNNA*******************************************************************************************VRIKEAEAR********************************************************************************MEAT*****

**********VERDFLNLNES****************************KRPKLETLNLSLSLPDVSLSLTASNALQNNVERPMPTRSIQSLAPSRDNTCSNDFTAASLSYSYSHPFSHNPSCSLTHNSTEYYEYSVGRDDQIWCGGEGTNGSVHSRFRPIGDGSVALNNHGGGGGGGGFSMIQGSRVMNKDSCNNSLYKTTSSDNLSFFPSELPAR****************NLRGLESMDGGRARKLSRPERILREIVSEAIPIMAQIIQELSDETLESVKEYLKNLFLMSEKREELMALKKRLERRSDLSKETLSKCHKDQLAILVAVKMGLGSFLSAKIQLPVNKLVEIFLYMRCRNVNCQSILPVDDCDCKICSTNKGFCSSCMCPVCLNFDCANNTCSWVGCDVCSHWCHAACGIQRNLIKPGPSLKGPSGTSEMQFHCIGCGHASEMFGFVKDVFLHCAKDWGLDTFVKELDCVTKIFKGSNDFKGKELQKKAAELVSKLENKVMSPSEACNFIIRFFNNADSMSDFTASGTSLNDLIVTQASVQKDAIPIPPATSLPPKYTIYNMTSSSGRRDSMSNDLFKKDLIGDLKVEDEIRFGKLSKNDGFDSLESVVRIKEAEARMFQNKADEARREADEYKRMVCARTEKLEEEYAHKLSKLCLRETEERRRKKLEELKVLEDSHCDYLKMKRMQAEIAGLLERM********

*********WV****LNL*************************************TLNLSLSLPDVSLSLT********************************FTAASLSYSYSHPFSHNPSCSLTHNSTEYYEYSVGRDDQIWCGGEGTNGSVHSRFRPIGDGSVALNNHGGGG*******************************************************************GGRARKLSRPERILREIVSEAIPIMAQIIQELSDETLESVKEYLKNLFLMSEKREELMALKKRLERRSDLSKETLSKCHKDQLAILVAVKMGLGSFLSAKIQLPVNKLVEIFLYMRCRNVNCQSILPVDDCDCKICSTNKGFCSSCMCPVCLNFDCANNTCSWVGCDVCSHWCHAACGIQRNLIKPGPSLKGPSGTSEMQFHCIGCGHASEMFGFVKDVFLHCAKDWGLDTFVKELDCVTKIFKGSNDFKGKELQKKAAELVSKLENKVMSPSEACNFIIRFFNNADS********************************SLPPKY***N***SSGRRDSMSNDLFKKDLIGDLKVEDEIRFGKLSKNDGFDSLESVVRIKEAEARMFQNKADEARREADEYKRMVCARTEKLEEEYAHKLSKLCLRETEERRRKKLEELKVLEDSHCDYLKMKRMQAEIAGLLERMEATKQ*W*

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MDSSSQDEKWVERDFLNLNESGVNSSSPxxxxxxxxxxxxxxxxxxxxxKRPKLETLNLSLSLPDVSLSLTASNALQNNVERPMPTRSIQSLAPSRDNTCSNDFTAASLSYSYSHPFSHNPSCSLTHNSTEYYEYSVGRDDQIWCGGEGTNGSVHSRFRPIGDGSVALNNHGGGGGGGGFSMIQGSRVMNKDSCNNSLYKTTSSDNLSFFPSELPARPRVETNSGDSRKKDSENLRGLESMDGGRARKLSRPERILREIVSEAIPIMAQIIQELSDETLESVKEYLKNLFLxxxxxxxxxxxxxxxxxxxxxxxxxLSKCHKDQLAILVAVKMGLGSFLSAKIQLPVNKLVEIFLYMRCRNVNCQSILPVDDCDCKICSTNKGFCSSCMCPVCLNFDCANNTCSWVGCDVCSHWCHAACGIQRNLIKPGPSLKGPSGTSEMQFHCIGCGHASEMFGFVKDVFLHCAKDWGLDTFVKELDCVTKIFKGSNDFKGKELQKKAAELVSKLENKVMSPSEACNFIIRFFNNADSMSDFTASGTSLNDLIVTQASVQKDAIPIPPATSLPPKYTIYNMTSSSGRRDSMSNDLFKKDLIGDLKVEDEIRFGKLSKNDGFDSLESVxxxxxxxxxxxxxxxxxxxxxxxxxxxxVCARTEKLEEEYAHKLSKLCxxxxxxxxxxxxxxxxxxxxxHCDYLKxxxxxxxxxxxxxxxxxxxxxWV

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		717	2.2.26 [Sep-21-2011]
Q94B71		733	Protein OBERON 3 OS=Arabi	yes	no	0.881	0.862	0.579	0.0
Q84TI3		1162	Protein OBERON 4 OS=Arabi	no	no	0.909	0.561	0.356	1e-102
Q84N38		549	OBERON-like protein OS=Ni	N/A	no	0.599	0.783	0.380	3e-82
Q9LUB7		574	Protein OBERON 2 OS=Arabi	no	no	0.599	0.749	0.380	5e-81
Q84N37		513	OBERON-like protein (Frag	N/A	no	0.598	0.836	0.374	2e-78
Q9S736		566	Protein OBERON 1 OS=Arabi	no	no	0.616	0.780	0.377	9e-77
Q9FIE3		620	Protein VERNALIZATION INS	no	no	0.290	0.335	0.227	9e-08

>sp\|Q94B71\|OBE3_ARATH Protein OBERON 3 OS=Arabidopsis thaliana GN=OBE3 PE=1 SV=1	Back alignment and function desciption

 Score =  748 bits (1931), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/720 (57%), Positives = 505/720 (70%), Gaps = 88/720 (12%)

Query: 2   DSSSQDEKWVERDFLNLNESGVNSSSPKRQAEEEVEEFQGENVTTNREKRPKLETLNLSL 61
           ++SS D+KWVERDF NL E   NSS  KR+A EE    + E      +K  K+ETLNLSL
Sbjct: 98  ENSSYDDKWVERDFFNLREMNPNSS--KRKAHEE----EEEAEEEEDKKSNKIETLNLSL 151

Query: 62  SLPDVSLSLTASNALQNNVERPMPTRSIQSLAPSRDNTCSNDFTAA--SLSYSYSHPFSH 119
           +LPDVSLSLTASNA    V+RP    S ++       + SNDFTA   S+SYSYSHPFSH
Sbjct: 152 ALPDVSLSLTASNA----VKRPRVVTSERTTT-----SFSNDFTATAPSMSYSYSHPFSH 202

Query: 120 NPSCSLTHNSTEYYEYSVGRDDQIWCGGEGTNGSVHSRFRPIGDGSVALNNHGGGGGGGG 179
           N SCS+T NST++ + SVG+DD IWC GEGTNGSVHSRFRPIGDG VAL N+   G    
Sbjct: 203 NISCSMTRNSTDF-DCSVGKDDHIWCAGEGTNGSVHSRFRPIGDGGVALANNPVSG---- 257

Query: 180 FSMIQGSRVMNKDSCNNSLYKTTSSDNLSFFPSELPARPRVE-TNSGDSRKKDSENLRGL 238
                               K +SS + SFFPSELPARP  E T SGDSRKK    +  L
Sbjct: 258 --------------------KPSSSADYSFFPSELPARPGNEVTISGDSRKK----VANL 293

Query: 239 ESMDGGRARKLSRPERILREIVSEAIPIMAQIIQELSDETLESVKEYLKNLFLMSEKREE 298
           E  D  R+      ER+L +IVS++I  +A IIQ ++DETLES KEYL+NL    EK+E+
Sbjct: 294 EDNDAVRS------ERVLYDIVSKSISSVALIIQGMADETLESAKEYLRNLIDSPEKKEK 347

Query: 299 LMALKKRLERRSDLSKETLSKCHKDQLAILVAVKMGLGSFLSAKIQLPVNKLVEIFLYMR 358
           L+ L+ ++++RSDLSKETLSKC KDQL ILVAV+ GL  FLS KI++P+N+LVEIFL++R
Sbjct: 348 LVNLQNQIDKRSDLSKETLSKCVKDQLDILVAVRTGLKYFLSGKIRIPMNELVEIFLFLR 407

Query: 359 CRNVNCQSILPVDDCDCKICSTNKGFCSSCMCPVCLNFDCANNTCSWVGCDVCSHWCHAA 418
           CRNVNC+S+LPVDDC+CKICS NKGFCSSCMCPVCL FD A+NTCSWVGCDVCSHWCHAA
Sbjct: 408 CRNVNCKSLLPVDDCECKICSNNKGFCSSCMCPVCLRFDSASNTCSWVGCDVCSHWCHAA 467

Query: 419 CGIQRNLIKPGPSLKGPSGTSEMQFHCIGCGHASEMFGFVKDVFLHCAKDWGLDTFVKEL 478
           CGIQ+NLIKPG SLKG  GT+EM FHCIGC H SEMFGFVKDVF+ CAK+WGL+T +KEL
Sbjct: 468 CGIQKNLIKPGHSLKGQRGTTEMMFHCIGCAHKSEMFGFVKDVFVCCAKNWGLETLIKEL 527

Query: 479 DCVTKIFKGSNDFKGKELQKKAAELVSKLENKVMSPSEACNFIIRFFNNADSMSDFTASG 538
           DCV K+F+GS+D KGK L  KA E+V KLE+K +SP +A NFII+FFN A+S+ +     
Sbjct: 528 DCVRKVFRGSDDAKGKALHLKANEMVKKLESKQISPLDASNFIIQFFNYAESIPEIPDPP 587

Query: 539 TSLNDLIVTQASVQKDAIPIPPATSLPPKYTIYNMTSSSGRRDSMSNDLFKKDLIGDLKV 598
             L   +  + S +KD   + P+TS   K   + +T      D+M N             
Sbjct: 588 RELT--VAAETSYRKDEASVTPSTSKDQKKKSFALT------DAMMN------------- 626

Query: 599 EDEIRFGKLSKNDGFDSLESVVRIKEAEARMFQNKADEARREADEYKRMVCARTEKLEEE 658
                         FDSLES+VRIKEAE RMFQ KADEAR EA+ +KRM+  +TEK+EEE
Sbjct: 627 -------------SFDSLESMVRIKEAETRMFQKKADEARIEAESFKRMIEMKTEKMEEE 673

Query: 659 YAHKLSKLCLRETEERRRKKLEELKVLEDSHCDYLKMK-RMQAEIAGLLERMEATKQQWV 717
           Y  KL++LCL+ETEERRR KLEELK LE+SHCDY  MK RM+AEIAGLL+RME T+QQ V
Sbjct: 674 YTEKLARLCLQETEERRRNKLEELKKLENSHCDYRNMKLRMEAEIAGLLKRMEVTRQQLV 733

Arabidopsis thaliana (taxid: 3702)

>sp\|Q84TI3\|OBE4_ARATH Protein OBERON 4 OS=Arabidopsis thaliana GN=OBE4 PE=1 SV=2	Back alignment and function description

>sp\|Q84N38\|PVIP_NICBE OBERON-like protein OS=Nicotiana benthamiana GN=PVIP PE=1 SV=1	Back alignment and function description

>sp\|Q9LUB7\|OBE2_ARATH Protein OBERON 2 OS=Arabidopsis thaliana GN=OBE2 PE=1 SV=1	Back alignment and function description

>sp\|Q84N37\|PVIP_PEA OBERON-like protein (Fragment) OS=Pisum sativum GN=PVIP PE=1 SV=1	Back alignment and function description

>sp\|Q9S736\|OBE1_ARATH Protein OBERON 1 OS=Arabidopsis thaliana GN=OBE1 PE=1 SV=1	Back alignment and function description

>sp\|Q9FIE3\|VIN3_ARATH Protein VERNALIZATION INSENSITIVE 3 OS=Arabidopsis thaliana GN=VIN3 PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		717
255573230		813	protein binding protein, putative [Ricin	0.997	0.879	0.741	0.0
224099593		735	predicted protein [Populus trichocarpa]	0.948	0.925	0.697	0.0
359472571		820	PREDICTED: protein OBERON 3-like [Vitis	0.972	0.85	0.712	0.0
224111406		764	predicted protein [Populus trichocarpa]	0.926	0.869	0.682	0.0
356512285		817	PREDICTED: protein OBERON 3-like [Glycin	0.967	0.849	0.656	0.0
449450133		808	PREDICTED: protein OBERON 3-like [Cucumi	0.956	0.849	0.619	0.0
356525050		794	PREDICTED: protein OBERON 3-like [Glycin	0.965	0.871	0.655	0.0
356577055		846	PREDICTED: protein OBERON 3-like [Glycin	0.940	0.796	0.613	0.0
358349461		801	class I heat shock protein [Medicago tru	0.963	0.862	0.594	0.0
356519393		860	PREDICTED: protein OBERON 3-like [Glycin	0.930	0.775	0.591	0.0

>gi\|255573230\|ref\|XP_002527544.1\| protein binding protein, putative [Ricinus communis] gi\|223533094\|gb\|EEF34853.1\| protein binding protein, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1094 bits (2829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 545/735 (74%), Positives = 626/735 (85%), Gaps = 20/735 (2%)

Query: 2   DSSSQDEKWVERDFLNLNESGVNSSSPKRQAEEEVEEFQGENVTTN--REKRPKLET-LN 58
           +S+  DEKWVERDF+NL+E+   SSS KR+  EE EE + E    N  REK+PKLE+ LN
Sbjct: 80  NSNQDDEKWVERDFMNLSETKSFSSS-KREIHEEEEEEEEEIERENCPREKKPKLESALN 138

Query: 59  LSLSLPDVSLSLTASNALQ--NNVERPMPTRSIQSL--APSRDNT---CSNDFTAASLSY 111
           LSL+LPDVSLSLTASNALQ  + V +P P+RS+QSL  APS +NT   CSNDFTAASLSY
Sbjct: 139 LSLALPDVSLSLTASNALQTADPVIKPKPSRSMQSLGAAPSNNNTQTTCSNDFTAASLSY 198

Query: 112 SYSHPFSHNPSCSLTHNSTEYYEYSVGRDDQIWCGGEGTNGSVHSRFRPIGDGSVALNN- 170
           SYSHPFSHNPSCSLT NSTE YEYSVGRDDQIWCGGEGTNGSVHSRFRPIGDG VALNN 
Sbjct: 199 SYSHPFSHNPSCSLTRNSTENYEYSVGRDDQIWCGGEGTNGSVHSRFRPIGDGLVALNNN 258

Query: 171 --HGGGGGGGGFSMIQGSRVMNKDSCNNSLYKTTSSDNLSFFPSELPARPRVETNSGDSR 228
             H GG   GGFSM+Q  RV NKDSCNNSLY+TTSS+NLSFFPSELPARPR++  SGDSR
Sbjct: 259 NNHVGGSANGGFSMMQSHRVTNKDSCNNSLYRTTSSENLSFFPSELPARPRLDAYSGDSR 318

Query: 229 KKDSENLRGLESMD-GGRARKLSRPERILREIVSEAIPIMAQIIQELSDETLESVKEYLK 287
           ++DSENLRGLE +D GG+ARKLSRPERILREIVSE+IP++AQIIQEL++ETLES KEYL+
Sbjct: 319 RRDSENLRGLEGVDAGGKARKLSRPERILREIVSESIPVIAQIIQELTEETLESTKEYLR 378

Query: 288 NLFLMSEKREELMALKKRLERRSDLSKETLSKCHKDQLAILVAVKMGLGSFLSAKIQLPV 347
           NL +M EKR+EL  L+ RL RRSDL+KETL KC KDQL ILVAVKMGL SF+S K++LP 
Sbjct: 379 NLIVMPEKRDELAGLQNRLGRRSDLTKETLLKCQKDQLEILVAVKMGLVSFISEKVRLPA 438

Query: 348 NKLVEIFLYMRCRNVNCQSILPVDDCDCKICSTNKGFCSSCMCPVCLNFDCANNTCSWVG 407
           ++LVE FLY+RCRNVNC SILPV+DC+CK CSTNKGFCSSCMCPVC+NFDCANNTCSWVG
Sbjct: 439 SELVETFLYLRCRNVNCNSILPVEDCECKFCSTNKGFCSSCMCPVCMNFDCANNTCSWVG 498

Query: 408 CDVCSHWCHAACGIQRNLIKPGPSLKGPSGTSEMQFHCIGCGHASEMFGFVKDVFLHCAK 467
           CDVCSHWCHAACGIQ+NLI+PGPSLKGP GT+EMQFHCIGC HASEMFGFVKDVF+ CAK
Sbjct: 499 CDVCSHWCHAACGIQKNLIRPGPSLKGPKGTTEMQFHCIGCNHASEMFGFVKDVFVFCAK 558

Query: 468 DWGLDTFVKELDCVTKIFKGSNDFKGKELQKKAAELVSKLENKVMSPSEACNFIIRFFNN 527
           DWGL+T +KELDCV KIFKGS D KGKEL  KA EL+S+L++K +S S++CN I +FFNN
Sbjct: 559 DWGLETLIKELDCVRKIFKGSEDIKGKELHVKAEELLSRLDSKTISISDSCNIIFQFFNN 618

Query: 528 ADSMSDFTASGTSLNDLIVTQASVQKDAIPIPPATSLPPKYTIYNMTSSSGRRDSMSNDL 587
           AD ++D  ASG S  +L+ T+ S++KD   IPPATSLPPKY IYN +SS G+RDS+SNDL
Sbjct: 619 ADDIADLPASGVSAKELMPTEPSLRKDVATIPPATSLPPKYAIYNTSSSGGKRDSLSNDL 678

Query: 588 FKKDL----IGDLKVEDEIRFGKLSKNDGFDSLESVVRIKEAEARMFQNKADEARREADE 643
            + DL    + DLK+EDE +FGKLSK DG DSLES+VRIKEAEARMFQ+KAD+ARREA+ 
Sbjct: 679 HRNDLKAAFLSDLKIEDEFQFGKLSKKDGLDSLESIVRIKEAEARMFQSKADDARREAEG 738

Query: 644 YKRMVCARTEKLEEEYAHKLSKLCLRETEERRRKKLEELKVLEDSHCDYLKMK-RMQAEI 702
           Y+RM+ A++EKLEEEYA KL+KLCL+ETEERRRKKLEELKVLE SH DY  MK RMQAEI
Sbjct: 739 YRRMIRAKSEKLEEEYAEKLAKLCLQETEERRRKKLEELKVLEHSHGDYYNMKLRMQAEI 798

Query: 703 AGLLERMEATKQQWV 717
           AGLLERME TKQQWV
Sbjct: 799 AGLLERMETTKQQWV 813

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224099593\|ref\|XP_002311544.1\| predicted protein [Populus trichocarpa] gi\|222851364\|gb\|EEE88911.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|359472571\|ref\|XP_002281609.2\| PREDICTED: protein OBERON 3-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224111406\|ref\|XP_002315843.1\| predicted protein [Populus trichocarpa] gi\|222864883\|gb\|EEF02014.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356512285\|ref\|XP_003524851.1\| PREDICTED: protein OBERON 3-like [Glycine max]	Back alignment and taxonomy information

>gi\|449450133\|ref\|XP_004142818.1\| PREDICTED: protein OBERON 3-like [Cucumis sativus] gi\|449524258\|ref\|XP_004169140.1\| PREDICTED: protein OBERON 3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356525050\|ref\|XP_003531140.1\| PREDICTED: protein OBERON 3-like [Glycine max]	Back alignment and taxonomy information

>gi\|356577055\|ref\|XP_003556645.1\| PREDICTED: protein OBERON 3-like [Glycine max]	Back alignment and taxonomy information

>gi\|358349461\|ref\|XP_003638755.1\| class I heat shock protein [Medicago truncatula] gi\|355504690\|gb\|AES85893.1\| class I heat shock protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356519393\|ref\|XP_003528357.1\| PREDICTED: protein OBERON 3-like [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		717
TAIR\|locus:2006837		733	TTA1 "TITANIA 1" [Arabidopsis	0.622	0.608	0.538	3.6e-161
TAIR\|locus:2087403		1162	TTA2 "TITANIA 2" [Arabidopsis	0.870	0.537	0.361	1.2e-99
UNIPROTKB\|Q84N38		549	PVIP "OBERON-like protein" [Ni	0.654	0.854	0.359	2.3e-78
TAIR\|locus:2077362		566	OBE1 "OBERON1" [Arabidopsis th	0.598	0.757	0.378	1.9e-76
TAIR\|locus:2164713		574	OBE2 "OBERON2" [Arabidopsis th	0.570	0.712	0.382	6.3e-76
UNIPROTKB\|Q84N37		513	PVIP "OBERON-like protein" [Pi	0.592	0.828	0.378	7.3e-75
TAIR\|locus:2173004		620	VIN3 "VERNALIZATION INSENSITIV	0.311	0.359	0.248	7e-07
TAIR\|locus:2044405		529	VEL2 "AT2G18880" [Arabidopsis	0.417	0.565	0.207	0.00022
TAIR\|locus:2094859		602	VRN5 "AT3G24440" [Arabidopsis	0.193	0.230	0.260	0.00027

TAIR\|locus:2006837 TTA1 "TITANIA 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1214 (432.4 bits), Expect = 3.6e-161, Sum P(2) = 3.6e-161
 Identities = 254/472 (53%), Positives = 326/472 (69%)

Query:   195 NNSLY-KTTSSDNLSFFPSELPARPRVE-TNSGDSRKKDSENLRGLESMDGGRARKLSRP 252
             NN +  K +SS + SFFPSELPARP  E T SGDSRKK    +  LE  D  R+      
Sbjct:   252 NNPVSGKPSSSADYSFFPSELPARPGNEVTISGDSRKK----VANLEDNDAVRS------ 301

Query:   253 ERILREIVSEAIPIMAQIIQELSDETLESVKEYLKNLFLMSEKREELMALKKRLERRSDL 312
             ER+L +IVS++I  +A IIQ ++DETLES KEYL+NL    EK+E+L+ L+ ++++RSDL
Sbjct:   302 ERVLYDIVSKSISSVALIIQGMADETLESAKEYLRNLIDSPEKKEKLVNLQNQIDKRSDL 361

Query:   313 SKETLSKCHKDQLAILVAVKMGLGSFLSAKIQLPVNKLVEIFLYMRCRNVNCQSILPVDD 372
             SKETLSKC KDQL ILVAV+ GL  FLS KI++P+N+LVEIFL++RCRNVNC+S+LPVDD
Sbjct:   362 SKETLSKCVKDQLDILVAVRTGLKYFLSGKIRIPMNELVEIFLFLRCRNVNCKSLLPVDD 421

Query:   373 CDCKICSTNKGFCSSCMCPVCLNFDCANNTCSWVGCDVCSHWCHAACGIQRNLIKPGPSL 432
             C+CKICS NKGFCSSCMCPVCL FD A+NTCSWVGCDVCSHWCHAACGIQ+NLIKPG SL
Sbjct:   422 CECKICSNNKGFCSSCMCPVCLRFDSASNTCSWVGCDVCSHWCHAACGIQKNLIKPGHSL 481

Query:   433 KGPSGTSEMQFHCIGCGHASEMFGFVKDVFLHCAKDWGLDTFVKELDCVTKIFKGSNDFK 492
             KG  GT+EM FHCIGC H SEMFGFVKDVF+ CAK+WGL+T +KELDCV K+F+GS+D K
Sbjct:   482 KGQRGTTEMMFHCIGCAHKSEMFGFVKDVFVCCAKNWGLETLIKELDCVRKVFRGSDDAK 541

Query:   493 GKELQKKAAELVSKLENKVMSPSEACNFIIRFFNNADSMSDFTASGTSLNDLIVTQASVQ 552
             GK L  KA E+V KLE+K +SP +A NFII+FFN A+S+ +       L   +  + S +
Sbjct:   542 GKALHLKANEMVKKLESKQISPLDASNFIIQFFNYAESIPEIPDPPRELT--VAAETSYR 599

Query:   553 KDAIPIPPATSLPPKYTIYNMTSSSGRRDSMSNDLFKKDLIGDLKVEDEIRFGKLSKNDG 612
             KD   + P+TS   K   + +T      D+M N     + +  +K E E R  +   ++ 
Sbjct:   600 KDEASVTPSTSKDQKKKSFALT------DAMMNSFDSLESMVRIK-EAETRMFQKKADEA 652

Query:   613 FDSLESVVRIKEAEARMFQNKADE--AR---READEYKRMVCARTEKLEEEY 659
                 ES  R+ E +    + +  E  AR   +E +E +R      +KLE  +
Sbjct:   653 RIEAESFKRMIEMKTEKMEEEYTEKLARLCLQETEERRRNKLEELKKLENSH 704

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0001708 "cell fate specification" evidence=IGI

GO:0009880 "embryonic pattern specification" evidence=IGI

GO:0090421 "embryonic meristem initiation" evidence=IGI

TAIR\|locus:2087403 TTA2 "TITANIA 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q84N38 PVIP "OBERON-like protein" [Nicotiana benthamiana (taxid:4100)]	Back alignment and assigned GO terms

TAIR\|locus:2077362 OBE1 "OBERON1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2164713 OBE2 "OBERON2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q84N37 PVIP "OBERON-like protein" [Pisum sativum (taxid:3888)]	Back alignment and assigned GO terms

TAIR\|locus:2173004 VIN3 "VERNALIZATION INSENSITIVE 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2044405 VEL2 "AT2G18880" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2094859 VRN5 "AT3G24440" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94B71	OBE3_ARATH	No assigned EC number	0.5791	0.8814	0.8622	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		717
pfam07227		446	pfam07227, DUF1423, Protein of unknown function (D	0.0

>gnl\|CDD\|219342 pfam07227, DUF1423, Protein of unknown function (DUF1423)	Back alignment and domain information

 Score =  580 bits (1496), Expect = 0.0
 Identities = 222/448 (49%), Positives = 294/448 (65%), Gaps = 3/448 (0%)

Query: 260 VSEAIPIMAQIIQELSDETLESVKEYLKNLFLMSEKREELMALKKRLERRSDLSKETLSK 319
             E++ ++A+ + E+ DE LE +KE L+ +   ++KR+EL+ L+K ++ RSDL+ ETL +
Sbjct: 1   ARESVDVVAERMHEMPDEYLEELKEALRGILEGAQKRDELVFLQKAVQSRSDLTSETLIR 60

Query: 320 CHKDQLAILVAVKMGLGSFLSAKIQLPVNKLVEIFLYMRCRNVNCQSILPVDDCDCKICS 379
            H+ QL ILVA+K G+ +FL   I +  + LVEIFLY RCRN+ CQS+LPVDDCDCKICS
Sbjct: 61  AHRVQLEILVAIKTGIQAFLHPSISISQSSLVEIFLYKRCRNIACQSLLPVDDCDCKICS 120

Query: 380 TNKGFCSSCMCPVCLNFDCANNTCSWVGCDVCSHWCHAACGIQRNLIKPGPSLKGPSGTS 439
             KGFCS CMC VC  FD A NTC WVGCDVCSHWCH  C I+  LI+PGPSLKG SGT+
Sbjct: 121 NKKGFCSLCMCVVCSKFDFAVNTCRWVGCDVCSHWCHTDCAIRDGLIRPGPSLKGGSGTT 180

Query: 440 EMQFHCIGCGHASEMFGFVKDVFLHCAKDWGLDTFVKELDCVTKIFKGSNDFKGKELQKK 499
           EMQFHC  C H SEMFGFVKDVF HCA +W  +T +KELD V KIF+GS D +GK+L  K
Sbjct: 181 EMQFHCRACNHTSEMFGFVKDVFQHCAPNWDRETLIKELDFVRKIFRGSEDARGKKLFWK 240

Query: 500 AAELVSKLENKVMSPSEACNFIIRFFNNADSMSDFTASGTSLNDLIVTQASVQKDAIPIP 559
             EL+ KL++K+ SP EACN I++FF   DS      +      LI  Q +  ++ I   
Sbjct: 241 CEELIEKLKSKLASPPEACNLILQFFQELDSSKSLENTSEPGR-LIAPQEA-CRNRIAEV 298

Query: 560 PATSLPPKYTIYNMTSSSGRRDSMSNDLFKKDLIGDLKVEDEIRFGKLSKNDGFDSLESV 619
              ++    ++        ++   + D   ++L    +   E++  +  K    D LES+
Sbjct: 299 VQEAVRKMESVAEEKMRMLKKARSALDACDRELEEKAREVSELKMERQRKKPQIDELESI 358

Query: 620 VRIKEAEARMFQNKADEARREADEYKRMVCARTEKLEEEYAHKLSKLCLRETEERRRKKL 679
           VR+K+AEA MFQ KADEARREA+  +R+  A+TEK EEEYA K  KL L E EE R+   
Sbjct: 359 VRLKQAEADMFQLKADEARREAERLQRIALAKTEKSEEEYASKYLKLRLSEAEEERQYLF 418

Query: 680 EELKVLEDSHCDYLKMK-RMQAEIAGLL 706
           EELK+ E+SH D   MK RM+++I GLL
Sbjct: 419 EELKLQEESHRDSDSMKMRMESKIRGLL 446

This family represents a conserved region approximately 500 residues long within a number of Arabidopsis thaliana proteins of unknown function. Length = 446

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		717
PF07227		446	DUF1423: Protein of unknown function (DUF1423); In	100.0
smart00249		47	PHD PHD zinc finger. The plant homeodomain (PHD) f	96.16
PF00628		51	PHD: PHD-finger; InterPro: IPR019787 Zinc finger (	89.46

>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []	Back alignment and domain information

Probab=100.00  E-value=2.2e-165  Score=1311.79  Aligned_cols=438  Identities=51%  Similarity=0.887  Sum_probs=417.2

Q ss_pred             HhccHHHHHHHHHhhhHHHHHHHHHHHHHhhcCchhhHHHHHHHHHhhhcCCCCHHHHhhhhhhHHHHHHHHHhcccccc
Q 005036          260 VSEAIPIMAQIIQELSDETLESVKEYLKNLFLMSEKREELMALKKRLERRSDLSKETLSKCHKDQLAILVAVKMGLGSFL  339 (717)
Q Consensus       260 vse~v~v~a~~~~em~~e~le~lKe~lr~il~~~dkr~e~~~LQk~lq~RsDLT~e~L~kahr~QLEILVAikTGi~~Fl  339 (717)
                      +||||++||++||+||+|+||+||++||+||++||||+||++||++||+|+|||++||++||||||||||||||||++||
T Consensus         1 ~~e~v~~~a~~~~~~~~e~l~~lk~~lr~i~~~~~~r~e~~~lQ~~l~~RsDLt~~~L~~~hr~QLEilVAiktG~~~fl   80 (446)
T PF07227_consen    1 ASESVPVMAEKMQEMPEESLEELKEYLREILEGPEKREEFVALQKLLQRRSDLTSETLSKAHRVQLEILVAIKTGIQAFL   80 (446)
T ss_pred             CCCcHHHHHHHHHHchHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHhccccCCHHHHhHhHHHHHHHHHHHhhCcHHHh
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCcchhHHHhhhccccccccccCCCCCCCCcccccCCCCCCCCCcccccccccCCCCccceEecCCcchHHhHHh
Q 005036          340 SAKIQLPVNKLVEIFLYMRCRNVNCQSILPVDDCDCKICSTNKGFCSSCMCPVCLNFDCANNTCSWVGCDVCSHWCHAAC  419 (717)
Q Consensus       340 ~~~~~i~~s~LvEiFl~~rCRN~aCrs~Lp~dDc~C~IC~~~~GFCr~CsC~IC~KFD~nkdtc~WIgCd~CgHwcHldC  419 (717)
                      ||+++||+++|||||+|+||||++|+++||++||+|+|||+++|||++||||||+|||+|+|||+|||||+||||||+||
T Consensus        81 ~~~~~~~~~~LveiFl~~rCrN~aC~s~LP~ddc~C~iC~~~~gFC~~C~C~iC~kfD~~~n~~~Wi~Cd~CgH~cH~dC  160 (446)
T PF07227_consen   81 HPSISISQSELVEIFLYKRCRNLACRSQLPVDDCDCKICCSEPGFCRRCMCCICSKFDDNKNTCSWIGCDVCGHWCHLDC  160 (446)
T ss_pred             CCCCCcChHHHHHHHHHHhcCCHHhhccCCccccCcchhcCCCCccccCCccccCCcccCCCCeeEEeccCCCceehhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCcccCCCCCCCCCCCccceEEeccCCCccchhhhHHHHHhhhhhcchhhhHHHhhhhhhhhcccCCCcchhHHHHH
Q 005036          420 GIQRNLIKPGPSLKGPSGTSEMQFHCIGCGHASEMFGFVKDVFLHCAKDWGLDTFVKELDCVTKIFKGSNDFKGKELQKK  499 (717)
Q Consensus       420 ALr~~~i~~G~~~kG~s~~lDm~F~C~aCgk~SeLlG~VKkvf~~ca~~w~~d~L~keL~lv~rIfrGSed~rGK~L~~~  499 (717)
                      |||+++|++|++.+|+.|++||+|||++|||+||||||||+||++||++|++|+|++||+||+|||+||+|++||+||++
T Consensus       161 ALr~~~i~~G~s~~g~~g~~d~~f~C~~C~~~seLlG~vk~vf~~ca~~~~~d~L~~eL~l~~rIf~GSed~rgk~L~~~  240 (446)
T PF07227_consen  161 ALRHELIGTGPSVKGSIGTLDMQFHCRACGKTSELLGFVKKVFQTCAKAWRVDVLCKELDLVRRIFRGSEDYRGKELHEK  240 (446)
T ss_pred             hcccccccCCccCCCCCccCceEEEccCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCccchhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCchhHHHHHHHHhhccCCCccccccCccccccccccccc-cCCCCCCCCCCCCCCcccc------cc
Q 005036          500 AAELVSKLENKVMSPSEACNFIIRFFNNADSMSDFTASGTSLNDLIVTQASV-QKDAIPIPPATSLPPKYTI------YN  572 (717)
Q Consensus       500 veeal~KLe~~~v~~~d~~~~Il~ffk~~~gi~~~l~~g~~~~~L~~~q~~~-~~~a~~~~~~~~~~~k~~i------~~  572 (717)
                      +++|++||++|+++++++||+||+||+++++.......+ +..++++||++| ++++.+++.++   .++++      ..
T Consensus       241 ~e~al~KL~~~~~~~~~a~~~il~ff~~~d~~~~~~~~~-~~~k~i~~q~a~~~~ia~~~~ea~---~~~e~v~~e~~~~  316 (446)
T PF07227_consen  241 VEEALAKLENGVIDSSEACKAILQFFQELDSSKSFENSG-ESGKEIPPQEACPNRIAEVVQEAV---RKMESVAEEKMRM  316 (446)
T ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHHHhcccccccccccc-cccccccccccccCCCCCcchhhc---ccchhhhhcchhh
Confidence            999999999997777799999999999987766655444 566677999999 77766665544   23322      45


Q ss_pred             cccCCccccccchhhhhhhccccchhhhhhhhccccCCCCchhhhHHHHhhHHHHHHHHhhHHHHHHHHHhhhHHHHhhh
Q 005036          573 MTSSSGRRDSMSNDLFKKDLIGDLKVEDEIRFGKLSKNDGFDSLESVVRIKEAEARMFQNKADEARREADEYKRMVCART  652 (717)
Q Consensus       573 ~k~~~~~~~~~~~el~~~~~~~~~~~~~El~~~~~~Kk~~~eeLEsIVRlKqAEA~MFQ~kAdeARrEAE~lqrI~~aK~  652 (717)
                      +++++..+++++++|.+     ++++++|+++++++||++|||||||||||||||+|||.||||||||||||||||+||+
T Consensus       317 ~kka~~~~~~~~~~l~~-----k~k~~~e~~~~~~~kk~~~eeLESIVRiKqAEA~MFQ~kAdEARrEAE~LqrI~~aK~  391 (446)
T PF07227_consen  317 LKKARLALETCDRELED-----KAKEVAELQFERQRKKPQIEELESIVRIKQAEAKMFQLKADEARREAEGLQRIALAKS  391 (446)
T ss_pred             hhhhhhhhhhhhhHHHh-----hhhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            78999999999888665     7799999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHhhhhhhhHHHHHHHHhHHHHHHHHhhhcchHHHH-HHHHHHHHHH
Q 005036          653 EKLEEEYAHKLSKLCLRETEERRRKKLEELKVLEDSHCDYLKMK-RMQAEIAGLL  706 (717)
Q Consensus       653 eK~EEEYas~~~Kl~l~EaEe~r~~~~Eelk~~E~s~~d~~~mk-rM~~~I~~LL  706 (717)
                      +|+|||||++|+||||+||||+|||||||||+||++|++|++|| ||+++|+|||
T Consensus       392 ~k~EEEYas~~~kl~l~eaee~r~~~~eelk~~e~s~~~~~~mk~rM~~~I~~LL  446 (446)
T PF07227_consen  392 EKIEEEYASRYLKLRLNEAEEERKKKFEELKVLENSHRDYDNMKMRMQSEIQDLL  446 (446)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999 9999999997

Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.

>smart00249 PHD PHD zinc finger	Back alignment and domain information

>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		717
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
3lqh_A		183	Histone-lysine N-methyltransferase MLL; PHD finger	8e-05
3lvg_D		190	LCB, clathrin light chain B; SELF assembly, coated	5e-04
3pur_A		528	Lysine-specific demethylase 7 homolog; oxidoreduct	8e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 66.4 bits (161), Expect = 2e-11
 Identities = 110/773 (14%), Positives = 221/773 (28%), Gaps = 252/773 (32%)

Query: 1   MDSSSQDEKWVERDFLNLNESGVNSSSPKRQAE-EEVEEFQGENVTTNRE-------KRP 52
           MD  + + ++  +D L++ E            + ++V++   +++ +  E       K  
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAF-----VDNFDCKDVQDMP-KSILSKEEIDHIIMSKDA 60

Query: 53  KLETLNLSLSLPDVSLSLTA---SNALQNNVERPMPTRSIQSLAPSRDNTCSNDFTAASL 109
              TL L  +L      +        L+ N +  M     +   PS              
Sbjct: 61  VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR---------- 110

Query: 110 SYSYSHPFSHNPSCSLTHNSTEYYEYSVGRDDQIWCGGEGTNGSVHS---RFRPIGDGSV 166
            Y       +N       ++  + +Y+V R              +       RP  +  V
Sbjct: 111 MYIEQRDRLYN-------DNQVFAKYNVSRLQPYL--------KLRQALLELRPAKN--V 153

Query: 167 ALNNHGGGGGGGGFSMIQGSRVMNKDSCNNSLYKTTSSDN---LSFFPSELPARPRVETN 223
            +   G  G         G   +  D C +   +         L+               
Sbjct: 154 LI--DGVLGS--------GKTWVALDVCLSYKVQCKMDFKIFWLNL-------------- 189

Query: 224 SGDSRKKDS--ENLRGLES-MDGGRARKLSRPERILREIVSEAIPIMAQIIQELSDETLE 280
             +    ++  E L+ L   +D     +      I   I                     
Sbjct: 190 -KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI--------------------H 228

Query: 281 SVKEYLKNLFLMSEKREELMALKKRLERRSDL-SKETLS----KCHKDQLAILVAVK-MG 334
           S++  L+ L         L+ L        ++ + +  +     C K    IL+  +   
Sbjct: 229 SIQAELRRLLKSKPYENCLLVL-------LNVQNAKAWNAFNLSC-K----ILLTTRFKQ 276

Query: 335 LGSFLSAKI--QLPVNKLVEIF-------LYMRCRNVNCQSILPVDDCDCKICSTNKGFC 385
           +  FLSA     + ++             L ++  +   Q  LP +     + +TN    
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD-LPRE-----VLTTN---- 326

Query: 386 SSCMCPVCLNF---DCANNTCSWVGCDVCSHWCHAACGIQRNLIKPGPSLKG--PSGTSE 440
                P  L+       +   +W       +W H  C     +I+   SL    P   +E
Sbjct: 327 -----PRRLSIIAESIRDGLATW------DNWKHVNCDKLTTIIE--SSLNVLEP---AE 370

Query: 441 MQFHCIGCGHASEMFG-FVKDV--------FLHCAKDWGLDTFVKELDCVTKIFKGSNDF 491
            +          +    F             +     W                    D 
Sbjct: 371 YR-------KMFDRLSVFPPSAHIPTILLSLI-----WF-------------------DV 399

Query: 492 KGKELQKKAAELVSKLENKVMSPSEACNFIIRFFNNADSMSDFTASGTSLNDLIVTQASV 551
              ++      +V+KL    +   +     I   +    +     +  +L+  IV   ++
Sbjct: 400 IKSDVM----VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455

Query: 552 QKDAIPIPPATSLPP---KYTIYN------MTSSSGRRDSMSNDLFKKDLIGDLK-VEDE 601
            K          +PP   +Y  Y+             R ++   +F   L  D + +E +
Sbjct: 456 PKTF---DSDDLIPPYLDQY-FYSHIGHHLKNIEHPERMTLFRMVF---L--DFRFLEQK 506

Query: 602 IRFGKLSKNDGFDSLESVVRIKEAEARMFQNKADEARREADEYKRMVCARTEKLEEEYAH 661
           IR    + N     L ++ ++K  +  +  N          +Y+R+V A           
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDND--------PKYERLVNA--------ILD 550

Query: 662 KLSKLCLRETEERRRKKLEELKVLEDSHCDYLKMKRMQAEIAGLLERMEATKQ 714
            L              K+EE  ++   + D L++  + AE   + E  EA KQ
Sbjct: 551 FL-------------PKIEE-NLICSKYTDLLRIA-LMAEDEAIFE--EAHKQ 586

PyMOL of 1vt4

>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Length = 183	Back alignment and structure

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190	Back alignment and structure

>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Length = 528	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		717
3lqh_A		183	Histone-lysine N-methyltransferase MLL; PHD finger	96.43
2k16_A		75	Transcription initiation factor TFIID subunit 3; p	94.89
2kgg_A		52	Histone demethylase jarid1A; PHD finger, histone m	94.46
1we9_A		64	PHD finger family protein; structural genomics, PH	93.21
1wew_A		78	DNA-binding family protein; structural genomics, P	92.29
3shb_A		77	E3 ubiquitin-protein ligase UHRF1; unmodified hist	91.77
1wep_A		79	PHF8; structural genomics, PHD domain, riken struc	90.08
2xb1_A		105	Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro;	89.91
1wee_A		72	PHD finger family protein; structural genomics, PH	89.81
3asl_A		70	E3 ubiquitin-protein ligase UHRF1; histone reader	89.02
1wem_A		76	Death associated transcription factor 1; structura	88.06
2vpb_A		65	Hpygo1, pygopus homolog 1; gene regulation, WNT si	86.84
2lv9_A		98	Histone-lysine N-methyltransferase MLL5; zinc fing	86.57
2e6s_A		77	E3 ubiquitin-protein ligase UHRF2; PHD domain, str	85.56
3kqi_A		75	GRC5, PHD finger protein 2; metal-binding, zinc-fi	84.8
3kv5_D		488	JMJC domain-containing histone demethylation prote	84.45
3o70_A		68	PHD finger protein 13; PHF13, structural genomics	83.77
2ri7_A		174	Nucleosome-remodeling factor subunit BPTF; zinc fi	83.55
1wen_A		71	Inhibitor of growth family, member 4; ING1-like pr	82.9
3o7a_A		52	PHD finger protein 13 variant; PHF13, zinc finger,	82.74
3v43_A		112	Histone acetyltransferase KAT6A; MOZ, PHD finger,	81.4
2rsd_A		68	E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant	81.37
3pur_A		528	Lysine-specific demethylase 7 homolog; oxidoreduct	81.36
1x4i_A		70	Inhibitor of growth protein 3; structural genomics	80.18
2jmi_A		90	Protein YNG1, ING1 homolog 1; PHD, histone, recogn	80.13

>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A	Back alignment and structure

Probab=96.43  E-value=0.0033  Score=61.26  Aligned_cols=68  Identities=18%  Similarity=0.548  Sum_probs=43.1

Q ss_pred             ccccccc-ccCCCCccceEecCCcchHHhHHhhhhcC-cccCCCCCCCCCCCccceEEeccCCCccchhhhHHHHHh
Q 005036          389 MCPVCLN-FDCANNTCSWVGCDVCSHWCHAACGIQRN-LIKPGPSLKGPSGTSEMQFHCIGCGHASEMFGFVKDVFL  463 (717)
Q Consensus       389 sC~IC~K-FD~nkdtc~WIgCd~CgHwcHldCALr~~-~i~~G~~~kG~s~~lDm~F~C~aCgk~SeLlG~VKkvf~  463 (717)
                      .|+||.+ |+++-...-||.||.|-.|-|..|.--.. .+   ...+  ...-+..|+|..|-....-.  |++.++
T Consensus         4 ~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~---e~~~--~~pe~~~y~Cp~C~~~~~~~--~~~~~~   73 (183)
T 3lqh_A            4 FCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMY---EILS--NLPESVAYTCVNCTERHPAE--WRLALE   73 (183)
T ss_dssp             BCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHH---HHHH--HSHHHHCCCCTTTCCSSSCH--HHHHHH
T ss_pred             cCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHH---HHhh--cCCCCCeeECcCCCCCCCHH--HHHHHH
Confidence            4889988 56555578899999999999999972111 00   0000  00112489999998886643  554433

PyMOL of 3lqh

>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*	Back alignment and structure

>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*	Back alignment and structure

>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2	Back alignment and structure

>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2	Back alignment and structure

>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}	Back alignment and structure

>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2	Back alignment and structure

>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}	Back alignment and structure

>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2	Back alignment and structure

>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B	Back alignment and structure

>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2	Back alignment and structure

>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*	Back alignment and structure

>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}	Back alignment and structure

>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2	Back alignment and structure

>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*	Back alignment and structure

>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}	Back alignment and structure

>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*	Back alignment and structure

>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A	Back alignment and structure

>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}	Back alignment and structure

>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A	Back alignment and structure

>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}	Back alignment and structure

>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*	Back alignment and structure

>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		717
d1we9a_		64	g.50.1.2 (A:) PHD finger protein At5g26210 {Thale	0.003

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64	Back information, alignment and structure


class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 34.6 bits (79), Expect = 0.003
 Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 2/34 (5%)

Query: 386 SSCMCPVCLNFDCANNTCSWVGCDVCSHWCHAAC 419
           SS  C  C     A+    W+ CD+C  W H  C
Sbjct: 5   SSGQCGACGESYAADEF--WICCDLCEMWFHGKC 36

PyMOL of d1we9a_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		717
d1wepa_		79	PHD finger protein 8 {Mouse (Mus musculus) [TaxId:	96.13
d1we9a_		64	PHD finger protein At5g26210 {Thale cress (Arabido	96.1
d1f62a_		51	Williams-Beuren syndrome transcription factor, WST	92.68
d1weva_		88	PHD finger protein 22 {Mouse (Mus musculus) [TaxId	92.64
d1weea_		72	PHD finger protein At1g33420 {Thale cress (Arabido	92.4
d1wewa_		78	Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop	89.5
d1wema_		76	Death associated transcription factor 1, Datf1 (DI	88.91

>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.13  E-value=0.00076  Score=55.02  Aligned_cols=48  Identities=23%  Similarity=0.589  Sum_probs=32.6

Q ss_pred             cccccccCCCCccceEecCCcchHHhHHhh-hhcCcccCCCCCCCCCCCccceEEeccCCCc
Q 005036          391 PVCLNFDCANNTCSWVGCDVCSHWCHAACG-IQRNLIKPGPSLKGPSGTSEMQFHCIGCGHA  451 (717)
Q Consensus       391 ~IC~KFD~nkdtc~WIgCd~CgHwcHldCA-Lr~~~i~~G~~~kG~s~~lDm~F~C~aCgk~  451 (717)
                      |||.+-++..+  .||.||.|.-|-|..|. |....+           ..+..|+|..|...
T Consensus        15 CiC~~~~~~~~--~mI~Cd~C~~W~H~~C~g~~~~~~-----------~~~~~~~C~~C~~~   63 (79)
T d1wepa_          15 CLCRQPYNVNH--FMIECGLCQDWFHGSCVGIEEENA-----------VDIDIYHCPDCEAV   63 (79)
T ss_dssp             STTSCSCCSSS--CEEEBTTTCCEEEHHHHTCCHHHH-----------TTCSBBCCTTTTTT
T ss_pred             eECCCccCCCC--cEEECCCCCCcEeccccCcchhcC-----------CCCCEEECccCcCC
Confidence            47887432222  59999999999999997 222211           22346999999754

PyMOL of d1wepa_

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure