Citrus Sinensis ID: 005048

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710------
MFLVEQVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKTSLSHDKLLFGSVQAAIKALWELSVLQKKTPGNRKWKDACGKDGVLTKAIKTRVQMKKEGLQKLPSYFKLQKMEIDFDLKTERECFSCFYDLHLSAAGCKCSPDRFACLKHANIFCSCEIDHRFVILRYSTDELNTLVEALEGGLDALKELASKNFKWADCSDTDGGLVKMDMESEVFPMDCCEQKESSSSSPRVENIVEGNGPCCSRSHVSSEVVQSEPQRGTSGLSASHVSVNSHNEGNDETQVMNKKAKVKHEVCIDLNMDVIPDGNESKLLLSDSHGKEAIENLKAHLSACYQEKVLCSGTVKEQDTMQVRSDCNSSNSHKDPNKDQPSCSRVIEGTCSFDVKKLFGVDLSLPHQQSKLPLVDFLKTDTINGSNVRTSVTDQRFQKKLETCVEPINFGCVMCGKLWCSKQAIFPKGFRSRVNFYSVLNPEKVCNYISEVLDAGLLGPLFKVTLEECPSETFVNVSAQKCWEMVLQRLNQEIERQGGLHERGLPHPQSLQSIDGLEMFGFLSSPIIQAIEALDPNHLCMEYWNHKLLTFGKTTEVNKNSSSGLSCSEAETKSKIFGVALMDEDQNSPSGQNSVEEEAQLVLRGLFQKASPKELKVMQRILYSEGRSDEWRVALATLIEEIQKSCR
cccccccccccHHHHHHcccccEEEEccccEEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHccccccccHHHHcccccccccccccccccccccccccccccccccccEEEccccHHHcccccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHcccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccEEEEEEEEcccccccEEEEEEEEEEccccccEEEEEEcccccccEEcccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHcccccHHHHHccccEEEccccccccccccccccccccccccHHcccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcc
cHHHHHHHHccHHHHHHccccEEEEEccccEEEEEcccHHHccccccccHHHHHccccccHHHHHHHHHHHHHHHHccccEcHHHHHHHHHHcHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcccccccHHHHHHccEEEEEEEEcccccccEEEHHcHHHHccccccccEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHccHHHHHcccccHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccccccccccEcHHHcccHHHHHccccccEcccccHcccHccccccccccHcccccccccccHccccccccccccHHHHccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccEEEEEEEEEEEEEEEEEEEccccccccEEcccccccEEEEEEEccHHHHHHHHHHHHHccccccEEEEEEEccccEEEEEccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHcccccHHHHHHHHHcccccEEHHHHccccEEEccccccccccccccccccccccccEccEEccccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcc
mflveqvtqlspsvlkaegvpvyhvvqhsgefvltfprayhsgfncgfncaeavnvapvdwlAHGQQAVELYSEQHrktslshdklLFGSVQAAIKALWELSVLqkktpgnrkwkdacgkdgvLTKAIKTRVQMKKEGLQKLPSYFKLQKMEIDFDLKTERECFSCfydlhlsaagckcspdrfaclkhanifcsceidHRFVILRYSTDELNTLVEALEGGLDALKELASknfkwadcsdtdgglvkmdmesevfpmdcceqkesssssprvenivegngpccsrshvssevvqsepqrgtsglsaSHVSvnshnegndetQVMNKKAKVKHEVCIDLnmdvipdgnesklllsdSHGKEAIENLKAHLSACYQekvlcsgtvkeqdtmqvrsdcnssnshkdpnkdqpscsrviegtcsfdvkklfgvdlslphqqsklplvdflktdtingsnvrtsvTDQRFQKKLEtcvepinfgcvmcgklwcskqaifpkgfrsrvnfysvlnpEKVCNYISEVldagllgplfkvtleecpsetfvnVSAQKCWEMVLQRLNQEIERqgglherglphpqslqsidglemfgflssPIIQAIEALDPNHLCMEYWnhklltfgkttevnknsssglscseaetKSKIFGVAlmdedqnspsgqnsvEEEAQLVLRGLFQKASPKELKVMQRILYSEGRSDEWRVALATLIEEIQKSCR
MFLVEQVtqlspsvlkaegVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKTSLSHDKLLFGSVQAAIKALWELSvlqkktpgnrkwkdacgkdgvltKAIKTRVQMKkeglqklpsyfklQKMEIDFDLKTERECFSCFYDLHLSAAGCKCSPDRFACLKHANIFCSCEIDHRFVILRYSTDELNTLVEALEGGLDALKELASKNFKWADCSDTDGGLVKMDMESEVFPMDCCEQKESSSSSPRVENIVEGNGPCCSRSHVSSEVVQSEPQRGTSGLSASHVSvnshnegndetqvmNKKAKVKHEVCIDLNMDVIPDGNESKLLLSDSHGKEAIENLKAHLSACYQEKVLCSGTVKEQDTMQVRSdcnssnshkdpnkdqpscSRVIEGTCSFDVKKLFGVDLSLphqqsklplvdflktdtingsnvrtsvtdqrfQKKLETCVEPINFGCVMCGKLWCSKQAIFPKGFRSRVNFYSVLNPEKVCNYISEVLDAGLLGPLFKVTLEECPSETFVNVSAQKCWEMVLQRLNQEIERQGGLHERGLPHPQSLQSIDGLEMFGFLSSPIIQAIEALDPNHLCMEYWNHKLLTFGKTTEVNKnsssglscseaeTKSKIFGVALMDEDQNSPSGQNSVEEEAQLVLRGlfqkaspkelKVMQRILysegrsdewRVALATLIEEIQKSCR
MFLVEQVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKTSLSHDKLLFGSVQAAIKALWELSVLQKKTPGNRKWKDACGKDGVLTKAIKTRVQMKKEGLQKLPSYFKLQKMEIDFDLKTERECFSCFYDLHLSAAGCKCSPDRFACLKHANIFCSCEIDHRFVILRYSTDELNTLVEALEGGLDALKELASKNFKWADCSDTDGGLVKMDMESEVFPMDCCEQKESSSSSPRVENIVEGNGPCCSRSHVSSEVVQSEPQRGTSGLSASHVSVNSHNEGNDETQVMNKKAKVKHEVCIDLNMDVIPDGNESKLLLSDSHGKEAIENLKAHLSACYQEKVLCSGTVKEQDTMQVRSDCNSSNSHKDPNKDQPSCSRVIEGTCSFDVKKLFGVDLSLPHQQSKLPLVDFLKTDTINGSNVRTSVTDQRFQKKLETCVEPINFGCVMCGKLWCSKQAIFPKGFRSRVNFYSVLNPEKVCNYISEVLDAGLLGPLFKVTLEECPSETFVNVSAQKCWEMVLQRLNQEIERQGGLHERGLPHPQSLQSIDGLEMFGFLSSPIIQAIEALDPNHLCMEYWNHKLLTFGKTTEVNKNSSSGLSCSEAETKSKIFGVALMDEDQNSPSGQNSVEEEAQLVLRGLFQKASPKELKVMQRILYSEGRSDEWRVALATLIEEIQKSCR
***********PSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKTSLSHDKLLFGSVQAAIKALWELSVLQKKTPGNRKWKDACGKDGVLTKAIKTRVQMKKEGLQKLPSYFKLQKMEIDFDLKTERECFSCFYDLHLSAAGCKCSPDRFACLKHANIFCSCEIDHRFVILRYSTDELNTLVEALEGGLDALKELASKNFKWADCSDTDGGLVKM*********************************************************************************VKHEVCIDLNMDVIPD******L********AIENLKAHLSACYQEKVLCSGT******************************RVIEGTCSFDVKKLFGVDLSLPHQQSKLPLVDFLKTDTINGSNVRTSVTDQRFQKKLETCVEPINFGCVMCGKLWCSKQAIFPKGFRSRVNFYSVLNPEKVCNYISEVLDAGLLGPLFKVTLEECPSETFVNVSAQKCWEMVLQRLNQEI*****************QSIDGLEMFGFLSSPIIQAIEALDPNHLCMEYWNHKLLTFGKT**********************************************LVLRGLFQK****ELKVMQRILYSEGRSDEWRVALATLIEE******
MFLVEQVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKTSLSHDKLLFGSVQAAIKALWELSVLQ***************DGVLTKAIKTRV******************MEIDFDLKTERECFSCFYDLHLSAAGCKCSPDRFACLKHANIFCSCEIDHRFVILRYSTDELNTLVEALEGGLDALKEL**********************************************IVEGNG**************************************************************I*****************************************************************************************************************************LETCVEPINFGCVMCGKLWCSKQAIFPKGFRSRVNFYSVLNPEKVCNYISEVLDAGLLGPLFKVTLEECPSETFVNVSAQKCWEMVLQRLN********************QSIDGLEMFGFLSSPIIQAIEALDPNHLCMEYWNHKL**********************************************************FQKASPKELKVMQRILYSEGRSDEWRVALATLIEEIQ****
MFLVEQVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKTSLSHDKLLFGSVQAAIKALWELSVLQKKTPGNRKWKDACGKDGVLTKAIKTRVQMKKEGLQKLPSYFKLQKMEIDFDLKTERECFSCFYDLHLSAAGCKCSPDRFACLKHANIFCSCEIDHRFVILRYSTDELNTLVEALEGGLDALKELASKNFKWADCSDTDGGLVKMDMESEVFPMD****************IVEGNGPCCS*************************SVNSHNEGNDETQVMNKKAKVKHEVCIDLNMDVIPDGNESKLLLSDSHGKEAIENLKAHLSACYQEKVLCSGTVKEQDT***********************SRVIEGTCSFDVKKLFGVDLSLPHQQSKLPLVDFLKTDTINGSNVRTSVTDQRFQKKLETCVEPINFGCVMCGKLWCSKQAIFPKGFRSRVNFYSVLNPEKVCNYISEVLDAGLLGPLFKVTLEECPSETFVNVSAQKCWEMVLQRLNQEIERQGGLHERGLPHPQSLQSIDGLEMFGFLSSPIIQAIEALDPNHLCMEYWNHKLLTFGKTT**************AETKSKIFGVALMDE***********EEEAQLVLRGLFQKASPKELKVMQRILYSEGRSDEWRVALATLIEEIQKSCR
MFLVEQVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKTSLSHDKLLFGSVQAAIKALWELSVLQKKTPGNRKWKDACGKDGVLTKAIKTRVQMKKEGLQKLPSYFKLQKMEIDFDLKTERECFSCFYDLHLSAAGCKCSPDRFACLKHANIFCSCEIDHRFVILRYSTDELNTLVEALEGGLDALKELASKNFKWADCSDT***LVKMDMESEVFPMDCCEQKESSSSSPRVENIVEGNGPCCSRSHVSSE*****************VSVNSHNEGNDETQVMNKKAKVKHEVCIDLNMDVIPDGNESKLLLSDSHGKEAIENLKAHLSACYQEKVLCSGTVK**DT*Q*R***********************************************LPLVDFLKTDTIN****RTSVTDQRFQKKLETCVEPINFGCVMCGKLWCSKQAIFPKGFRSRVNFYSVLNPEKVCNYISEVLDAGLLGPLFKVTLEECPSETFVNVSAQKCWEMVLQRLNQEIERQGGLHERGLPHPQSLQSIDGLEMFGFLSSPIIQAIEALDPNHLCMEYWNHKLLTFGK********************SKIFGVALMDE********NSVEEEAQLVLRGLFQKASPKELKVMQRILYSEGRSDEWRVALATLIEEIQKSCR
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MFLVEQVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKTSLSHDKLLFGSVQAAIKALWELSVLQKKTPGNRKWKDACGKDGVLTKAIKTRVQMKKEGLQKLPSYFKLQKMEIDFDLKTERECFSCFYDLHLSAAGCKCSPDRFACLKHANIFCSCEIDHRFVILRYSTDELNTLVEALEGGLDALKELASKNFKWADCSDTDGGLVKMDMESEVFPMDCCEQKESSSSSPRVENIVEGNGPCCSRSHVSSEVVQSEPQRGTSGLSASHVSVNSHNEGNDETQVMNKKAKVKHEVCIDLNMDVIPDGNESKLLLSDSHGKEAIENLKAHLSACYQEKVLCSGTVKEQDTMQVRSDCNSSNSHKDPNKDQPSCSRVIEGTCSFDVKKLFGVDLSLPHQQSKLPLVDFLKTDTINGSNVRTSVTDQRFQKKLETCVEPINFGCVMCGKLWCSKQAIFPKGFRSRVNFYSVLNPEKVCNYISEVLDAGLLGPLFKVTLEECPSETFVNVSAQKCWEMVLQRLNQEIERQGGLHERGLPHPQSLQSIDGLEMFGFLSSPIIQAIEALDPNHLCMEYWNHKLLTFGKTTEVNKNSSSGLSCSEAETKSKIFGVALMDEDQNSPSGQNSVEEEAQLVLRGLFQKASPKELKVMQRILYSEGRSDEWRVALATLIEEIQKSCR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query716 2.2.26 [Sep-21-2011]
Q8GUI6954 Probable lysine-specific yes no 0.279 0.209 0.653 2e-85
Q6IQX0 1503 Lysine-specific demethyla no no 0.287 0.137 0.343 1e-29
Q9VMJ7 1838 Lysine-specific demethyla yes no 0.282 0.109 0.337 3e-29
Q5F3R2 1522 Lysine-specific demethyla yes no 0.296 0.139 0.354 1e-28
Q62240 1548 Lysine-specific demethyla yes no 0.298 0.138 0.333 7e-28
Q80Y84 1544 Lysine-specific demethyla no no 0.294 0.136 0.343 1e-27
Q9UGL1 1544 Lysine-specific demethyla yes no 0.294 0.136 0.343 1e-27
Q9BY66 1539 Lysine-specific demethyla no no 0.296 0.137 0.334 2e-27
Q5XUN4 1535 Lysine-specific demethyla no no 0.296 0.138 0.334 2e-27
Q30DN6 1545 Lysine-specific demethyla no no 0.298 0.138 0.333 2e-27
>sp|Q8GUI6|JMJ14_ARATH Probable lysine-specific demethylase JMJ14 OS=Arabidopsis thaliana GN=JMJ14 PE=1 SV=1 Back     alignment and function desciption
 Score =  317 bits (813), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 151/231 (65%), Positives = 177/231 (76%)

Query: 2   FLVEQVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDW 61
            L + VTQLSP +LK EGVPVY  VQ SGEF+LTFP+AYHSGFNCGFNCAEAVNVAPVDW
Sbjct: 358 LLHQLVTQLSPRILKEEGVPVYRAVQRSGEFILTFPKAYHSGFNCGFNCAEAVNVAPVDW 417

Query: 62  LAHGQQAVELYSEQHRKTSLSHDKLLFGSVQAAIKALWELSVLQKKTPGNRKWKDACGKD 121
           L HGQ AVE YS+Q RK+SLSHDKLL G+   A   LWELS+ +KKTP   +WK  C +D
Sbjct: 418 LVHGQNAVEGYSKQRRKSSLSHDKLLLGAAMEATYCLWELSLSKKKTPVIARWKRVCSED 477

Query: 122 GVLTKAIKTRVQMKKEGLQKLPSYFKLQKMEIDFDLKTERECFSCFYDLHLSAAGCKCSP 181
           G+LTKA+K RVQM++E L  L   F L+KME DFD K ERECF CFYDLH+SA+ CKCSP
Sbjct: 478 GLLTKAVKKRVQMEEERLNHLQDGFSLRKMEGDFDNKRERECFLCFYDLHMSASSCKCSP 537

Query: 182 DRFACLKHANIFCSCEIDHRFVILRYSTDELNTLVEALEGGLDALKELASK 232
           +RFACL HA   CSCE   R++++R++ DEL  LV ALEG LDA+   ASK
Sbjct: 538 NRFACLIHAKDLCSCESKDRYILIRHTLDELWALVRALEGDLDAIDLWASK 588
Histone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3 with a higher activity for H3K4me3 and H3K4me2 than H3K4me1. No activity on H3K9me3/2, H3K36me3/2 and H3K27me3/2. Represses FT and TSF expression to inhibit the floral transition. Binds around the transcription start site of the FT locus. Involved in the DRM2-mediated maintenance of DNA methylation, but not required for the de novo DNA methylation. Required for demethylating histone H3K4me3 at the target of RNA silencing.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: -
>sp|Q6IQX0|KD5BB_DANRE Lysine-specific demethylase 5B-B OS=Danio rerio GN=kdm5bb PE=2 SV=2 Back     alignment and function description
>sp|Q9VMJ7|KDM5_DROME Lysine-specific demethylase lid OS=Drosophila melanogaster GN=lid PE=1 SV=1 Back     alignment and function description
>sp|Q5F3R2|KDM5B_CHICK Lysine-specific demethylase 5B OS=Gallus gallus GN=KDM5B PE=2 SV=1 Back     alignment and function description
>sp|Q62240|KDM5D_MOUSE Lysine-specific demethylase 5D OS=Mus musculus GN=Kdm5d PE=2 SV=2 Back     alignment and function description
>sp|Q80Y84|KDM5B_MOUSE Lysine-specific demethylase 5B OS=Mus musculus GN=Kdm5b PE=1 SV=1 Back     alignment and function description
>sp|Q9UGL1|KDM5B_HUMAN Lysine-specific demethylase 5B OS=Homo sapiens GN=KDM5B PE=1 SV=3 Back     alignment and function description
>sp|Q9BY66|KDM5D_HUMAN Lysine-specific demethylase 5D OS=Homo sapiens GN=KDM5D PE=1 SV=2 Back     alignment and function description
>sp|Q5XUN4|KDM5D_PANTR Lysine-specific demethylase 5D OS=Pan troglodytes GN=KDM5D PE=2 SV=1 Back     alignment and function description
>sp|Q30DN6|KDM5D_CANFA Lysine-specific demethylase 5D OS=Canis familiaris GN=KDM5D PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query716
359483996 1118 PREDICTED: probable lysine-specific deme 0.991 0.635 0.549 0.0
356532896 1049 PREDICTED: probable lysine-specific deme 0.955 0.652 0.477 0.0
356558538 1048 PREDICTED: probable lysine-specific deme 0.951 0.649 0.485 0.0
449435562 1069 PREDICTED: probable lysine-specific deme 0.966 0.647 0.491 1e-177
357442891 1000 Lysine-specific demethylase 5A [Medicago 0.903 0.647 0.471 1e-162
357519437 1042 Lysine-specific demethylase 5A [Medicago 0.967 0.665 0.418 1e-142
297804096 948 transcription factor jumonji family prot 0.815 0.616 0.428 1e-138
302143629 1178 unnamed protein product [Vitis vinifera] 0.956 0.581 0.393 1e-133
255578025 935 transcription factor, putative [Ricinus 0.495 0.379 0.586 1e-117
296089238 951 unnamed protein product [Vitis vinifera] 0.396 0.298 0.618 3e-93
>gi|359483996|ref|XP_002271515.2| PREDICTED: probable lysine-specific demethylase JMJ14-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  739 bits (1908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/731 (54%), Positives = 500/731 (68%), Gaps = 21/731 (2%)

Query: 2    FLVEQVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDW 61
             L E VTQLSPSVLK+E VPVY  +Q+SGEF+LTFPRAYHSGFNCGFNCAEAVNVAPVDW
Sbjct: 393  LLNELVTQLSPSVLKSENVPVYRAIQNSGEFILTFPRAYHSGFNCGFNCAEAVNVAPVDW 452

Query: 62   LAHGQQAVELYSEQHRKTSLSHDKLLFGSVQAAIKALWELSVLQKKTPGNRKWKDACGKD 121
            L+HGQ AVELYSEQ RKTS+SHDKLL  S Q A++AL + SVL K+   N  WK  CGKD
Sbjct: 453  LSHGQSAVELYSEQCRKTSISHDKLLLASAQKAVQALRDPSVLGKEDQVNLSWKSVCGKD 512

Query: 122  GVLTKAIKTRVQMKKEGLQKLPSYFKLQKMEIDFDLKTERECFSCFYDLHLSAAGCKCSP 181
            G LTKA+KTRVQM++E L +LP  ++LQKME DFDLK ERECFSCFYDLHLSAA C+CSP
Sbjct: 513  GTLTKAVKTRVQMEEERLDRLPIGWRLQKMERDFDLKNERECFSCFYDLHLSAASCECSP 572

Query: 182  DRFACLKHANIFCSCEIDHRFVILRYSTDELNTLVEALEGGLDALKELASKNFKWADCSD 241
            D+FACLKHA++ CSCE + +FV+LRY+ D+L TLVE+LEGGLDA++  AS++      +D
Sbjct: 573  DQFACLKHASLICSCEPNRKFVLLRYTMDDLKTLVESLEGGLDAIEVWASEDLGLVS-AD 631

Query: 242  TDGGLVKMDMESEVFPMDCCEQKESSSSSPRVENIVEGNGPCCSRSHVSSEVVQSEPQRG 301
             D     +D E E+     C+QKES   S R +  ++ N PC S  HVSSEVVQSE Q+G
Sbjct: 632  KDACGAMLDQEREISGPIGCDQKESPPCSSRTQENLDINEPCSSSYHVSSEVVQSENQQG 691

Query: 302  TSGLSASHVSVNSHNEG-NDETQVMNKKAKVKHEVCIDLNMDVIPDGNESKL-LLSDSHG 359
            T G   SH+  + HN+  N E      ++KV    CIDLN+D + D + S L  +S S  
Sbjct: 692  TFGFCVSHIRTDRHNDNLNKEGLTKGYESKVGQGFCIDLNLDTMSDEHVSGLQQVSYSCD 751

Query: 360  KEAIENL-KAHLSACYQEKVLCSGTVKEQDTMQVRSDCNSSNSHKDPNKDQPSCSRVIEG 418
             +A  N+ +  LS C +EKV C+   K+ D +++  DC+SS S+  PNK           
Sbjct: 752  SKATGNVAETFLSVCKEEKVNCADVPKQPDIVRLGGDCDSSVSYVLPNKHHFPYPVDNGN 811

Query: 419  TCSFDVKKLFGVDL--SLPHQQSKLPLVDFLKTDTINGSNVRTSVTDQR-FQKKLETCVE 475
             C  D  KLFG D+  SLPH  S LP     KT+ +  S+V+   TDQ     K+  CVE
Sbjct: 812  PCISDGSKLFGADILVSLPH-SSTLP-SSLPKTEILGSSDVKACATDQTCLIPKMNFCVE 869

Query: 476  PINFGCVMCGKLWCSKQAIFPKGFRSRVNFYSVLNPEKVCNYISEVLDAGLLGPLFKVTL 535
            P++FG V+ GK WCSKQAIFPKGF SRV F+SV +P ++C YISEVLDAGLLGPLFKVT 
Sbjct: 870  PMHFGTVLFGKPWCSKQAIFPKGFTSRVKFFSVCDPTQMCYYISEVLDAGLLGPLFKVTS 929

Query: 536  EECPSETFVNVSAQKCWEMVLQRLNQEIERQGGLHERGLPHPQSLQSIDGLEMFGFLSSP 595
            E CPSETF NVS +KCWEMVLQ+L QEI R   L ++ LP  + LQ ++GLEMFGFLS P
Sbjct: 930  EGCPSETFANVSPEKCWEMVLQKLQQEIIRHSSLGKQLLPSLECLQGVNGLEMFGFLSPP 989

Query: 596  IIQAIEALDPNHLCMEYWNHKLLTFGKTTEVNKNSSS-------GLSCSEAETKSKIFGV 648
            IIQ IEALDPNH C+EYWN K     K   VN  S+S       GLSCS  ETK+K+FG 
Sbjct: 990  IIQVIEALDPNHQCLEYWNQKSRV--KMENVNDMSASNSRKYPFGLSCSPGETKAKLFGF 1047

Query: 649  ALMDEDQNSPS---GQNSVEEEAQLVLRGLFQKASPKELKVMQRILYSEGRSDEWRVALA 705
             L  +D ++ S   G +SV E+ +  L+G F+KA+ +EL +M ++  SE  S EW VA  
Sbjct: 1048 DLTKQDPDNSSIGRGDHSVGEDIKTTLQGFFKKANREELIMMYKVFCSEYTSAEWGVAFT 1107

Query: 706  TLIEEIQKSCR 716
            TL EEI+K+C+
Sbjct: 1108 TLTEEIRKTCK 1118

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356532896|ref|XP_003535005.1| PREDICTED: probable lysine-specific demethylase JMJ14-like [Glycine max] Back     alignment and taxonomy information
>gi|356558538|ref|XP_003547562.1| PREDICTED: probable lysine-specific demethylase JMJ14-like [Glycine max] Back     alignment and taxonomy information
>gi|449435562|ref|XP_004135564.1| PREDICTED: probable lysine-specific demethylase JMJ14-like [Cucumis sativus] gi|449508625|ref|XP_004163366.1| PREDICTED: probable lysine-specific demethylase JMJ14-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357442891|ref|XP_003591723.1| Lysine-specific demethylase 5A [Medicago truncatula] gi|358344555|ref|XP_003636354.1| Lysine-specific demethylase 5A [Medicago truncatula] gi|355480771|gb|AES61974.1| Lysine-specific demethylase 5A [Medicago truncatula] gi|355502289|gb|AES83492.1| Lysine-specific demethylase 5A [Medicago truncatula] Back     alignment and taxonomy information
>gi|357519437|ref|XP_003630007.1| Lysine-specific demethylase 5A [Medicago truncatula] gi|355524029|gb|AET04483.1| Lysine-specific demethylase 5A [Medicago truncatula] Back     alignment and taxonomy information
>gi|297804096|ref|XP_002869932.1| transcription factor jumonji family protein [Arabidopsis lyrata subsp. lyrata] gi|297315768|gb|EFH46191.1| transcription factor jumonji family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|302143629|emb|CBI22382.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255578025|ref|XP_002529883.1| transcription factor, putative [Ricinus communis] gi|223530610|gb|EEF32486.1| transcription factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|296089238|emb|CBI39010.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query716
TAIR|locus:2128659954 JMJ14 "JUMONJI 14" [Arabidopsi 0.449 0.337 0.521 1.9e-136
TAIR|locus:2196979819 JMJ18 "Jumonji domain-containi 0.315 0.275 0.653 1.1e-131
TAIR|locus:20256351209 PKDM7D [Arabidopsis thaliana ( 0.347 0.205 0.538 7.9e-119
TAIR|locus:2044697806 MEE27 "maternal effect embryo 0.357 0.317 0.545 6e-116
TAIR|locus:2064910708 AT2G38950 [Arabidopsis thalian 0.314 0.317 0.432 1.2e-51
TAIR|locus:2031290 1116 AT1G63490 [Arabidopsis thalian 0.286 0.183 0.357 2.3e-24
ZFIN|ZDB-GENE-030424-1 1522 kdm5bb "lysine (K)-specific de 0.118 0.055 0.529 3.2e-24
ZFIN|ZDB-GENE-030131-5379 1483 kdm5ba "lysine (K)-specific de 0.117 0.056 0.535 1.7e-23
UNIPROTKB|F1NRC4 1510 KDM5B "Lysine-specific demethy 0.118 0.056 0.552 5.9e-23
UNIPROTKB|F1NUR9 1521 KDM5B "Lysine-specific demethy 0.118 0.055 0.552 6e-23
TAIR|locus:2128659 JMJ14 "JUMONJI 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 810 (290.2 bits), Expect = 1.9e-136, Sum P(3) = 1.9e-136
 Identities = 173/332 (52%), Positives = 215/332 (64%)

Query:     3 LVEQVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWL 62
             L + VTQLSP +LK EGVPVY  VQ SGEF+LTFP+AYHSGFNCGFNCAEAVNVAPVDWL
Sbjct:   359 LHQLVTQLSPRILKEEGVPVYRAVQRSGEFILTFPKAYHSGFNCGFNCAEAVNVAPVDWL 418

Query:    63 AHGQQAVELYSEQHRKTSLSHDKLLFGSVQAAIKALWELSVLQKKTPGNRKWKDACGKDG 122
              HGQ AVE YS+Q RK+SLSHDKLL G+   A   LWELS+ +KKTP   +WK  C +DG
Sbjct:   419 VHGQNAVEGYSKQRRKSSLSHDKLLLGAAMEATYCLWELSLSKKKTPVIARWKRVCSEDG 478

Query:   123 VLTKAIKTRVQMKKEGLQKLPSYFKLQKMEIDFDLKTERECFSCFYDLHLSAAGCKCSPD 182
             +LTKA+K RVQM++E L  L   F L+KME DFD K ERECF CFYDLH+SA+ CKCSP+
Sbjct:   479 LLTKAVKKRVQMEEERLNHLQDGFSLRKMEGDFDNKRERECFLCFYDLHMSASSCKCSPN 538

Query:   183 RFACLKHANIFCSCEIDHRFVILRYSTDELNTLVEALEGGLDALKELASKNFKWADCSDT 242
             RFACL HA   CSCE   R++++R++ DEL  LV ALEG LDA+   ASK      C D 
Sbjct:   539 RFACLIHAKDLCSCESKDRYILIRHTLDELWALVRALEGDLDAIDLWASK------CRDQ 592

Query:   243 DGGLVKMDME-SEVFPMDCCEQKESSSSSPRVENIVEGNGPCCSRSHVSSEVVQSEPQRG 301
                      E + +    C + + SS    R +N ++           S++ VQ + Q G
Sbjct:   593 YPSQHPRAREYAYLKSAPCIKSRGSSKVQQREQNNLQLVSERLQSDLTSNKEVQLK-QDG 651

Query:   302 TSGLSA-SHVSVNSHNEG-NDETQVMNKKAKV 331
              S ++   H S  +H  G  D++ V + K  V
Sbjct:   652 DSDVNRHGHESERNHVHGITDKSAVTDVKLGV 683
GO:0003677 "DNA binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS
GO:0032453 "histone demethylase activity (H3-K4 specific)" evidence=IDA
GO:0048573 "photoperiodism, flowering" evidence=IMP
GO:0009910 "negative regulation of flower development" evidence=IMP
GO:0034720 "histone H3-K4 demethylation" evidence=IMP
GO:0010216 "maintenance of DNA methylation" evidence=IMP
GO:0043687 "post-translational protein modification" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
TAIR|locus:2196979 JMJ18 "Jumonji domain-containing protein 18" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025635 PKDM7D [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044697 MEE27 "maternal effect embryo arrest 27" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2064910 AT2G38950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031290 AT1G63490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030424-1 kdm5bb "lysine (K)-specific demethylase 5Bb" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-5379 kdm5ba "lysine (K)-specific demethylase 5Ba" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NRC4 KDM5B "Lysine-specific demethylase 5B" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NUR9 KDM5B "Lysine-specific demethylase 5B" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.11LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query716
smart0054286 smart00542, FYRC, FY-rich domain, C-terminal regio 2e-23
pfam0596584 pfam05965, FYRC, F/Y rich C-terminus 4e-21
pfam02373114 pfam02373, JmjC, JmjC domain, hydroxylase 1e-20
pfam0292854 pfam02928, zf-C5HC2, C5HC2 zinc finger 6e-16
smart0054144 smart00541, FYRN, FY-rich domain, N-terminal regio 2e-10
pfam0596454 pfam05964, FYRN, F/Y-rich N-terminus 3e-08
>gnl|CDD|197781 smart00542, FYRC, FY-rich domain, C-terminal region Back     alignment and domain information 
 Score = 94.3 bits (235), Expect = 2e-23
 Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 7/87 (8%)

Query: 530 LFKVTLEECPSETFVNVSAQKCWEMVLQRLNQEIERQGGLHERGLPHPQSLQSIDGLEMF 589
           LF+V +E  P E F   S +KCWEMVL+R+ +       L           + + G EMF
Sbjct: 1   LFRVEIESDPGEVFKGESPEKCWEMVLERVQEARIAADLL-------QLLPEGVSGEEMF 53

Query: 590 GFLSSPIIQAIEALDPNHLCMEYWNHK 616
           G  S  +++ IEAL   H C  YW   
Sbjct: 54  GLSSPAVVKLIEALPGVHQCTNYWFRY 80

is sometimes closely juxtaposed with the N-terminal region (FYRN), but sometimes is far distant. Unknown function, but occurs frequently in chromatin-associated proteins. Length = 86
>gnl|CDD|218831 pfam05965, FYRC, F/Y rich C-terminus Back     alignment and domain information
>gnl|CDD|202224 pfam02373, JmjC, JmjC domain, hydroxylase Back     alignment and domain information
>gnl|CDD|217292 pfam02928, zf-C5HC2, C5HC2 zinc finger Back     alignment and domain information
>gnl|CDD|128814 smart00541, FYRN, FY-rich domain, N-terminal region Back     alignment and domain information
>gnl|CDD|218830 pfam05964, FYRN, F/Y-rich N-terminus Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 716
KOG1246904 consensus DNA-binding protein jumonji/RBP2/SMCY, c 100.0
smart0054286 FYRC "FY-rich" domain, C-terminal region. is somet 99.88
PF0596586 FYRC: F/Y rich C-terminus; InterPro: IPR003889 The 99.86
KOG0958690 consensus DNA damage-responsive repressor GIS1/RPH 99.82
PF0596454 FYRN: F/Y-rich N-terminus; InterPro: IPR003888 The 99.78
PF0292854 zf-C5HC2: C5HC2 zinc finger; InterPro: IPR004198 Z 99.61
smart0054144 FYRN "FY-rich" domain, N-terminal region. is somet 99.58
PF02373114 JmjC: JmjC domain, hydroxylase; InterPro: IPR01312 99.42
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=6.5e-37  Score=362.18  Aligned_cols=432  Identities=29%  Similarity=0.341  Sum_probs=295.1

Q ss_pred             ccccceeeeChhhHhhCCCceEEeeecCCcEEEecCCccccccCCCcchhhhcccCCcchhhhhHhHHHHHHhhcCCCCC
Q 005048            2 FLVEQVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKTSL   81 (716)
Q Consensus         2 LL~~lvtmvsP~~L~~~GVpVyr~~Q~pGEFVITFPrAYHaGFn~GfN~aEAVNFA~~dWL~~G~~a~~~y~~~~r~~~f   81 (716)
                      ++|+++++++|..|..+|||||+++|+|||||||||++||+|||+||||+|+|||||.+||++|+.++++|+...+.++|
T Consensus       394 ~~~~~~~~~~p~~l~~~gvpv~~~~q~~ge~vitfP~~Y~~g~~~gf~~~e~vn~ap~dwl~~gr~~~~~~~~~~~~~lf  473 (904)
T KOG1246|consen  394 LLHALVTLMSPNFLTDEGVPVYRTVQNPGEFVITFPRAYHAGFNCGFNFAEAVNFAPSDWLPVGRGAAEAYSLLLRLSLF  473 (904)
T ss_pred             cccccccccCcchhhcCCCCceecccCCCCEeecCCCeeeecccccccHHHhcccCCcchhHHHHHHHHHHHhhccCCcc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhhc-ccCCCccchhhccccchhhHHHHHHHHHHHHhhcccCchhhhhhhcccccCCccc
Q 005048           82 SHDKLLFGSVQAAIKALWELSVLQ-KKTPGNRKWKDACGKDGVLTKAIKTRVQMKKEGLQKLPSYFKLQKMEIDFDLKTE  160 (716)
Q Consensus        82 ShdeLL~~~A~~a~~~l~el~ll~-ke~~~~~~w~~~c~kdgil~~alk~rv~~E~~r~~~lp~~~k~~kme~d~d~~de  160 (716)
                      ||++|++.+|+..+...+.+.+.. ++..-...|...+...+.....+..+   |+...+.++            |...+
T Consensus       474 s~~~l~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~------------~~~~~  538 (904)
T KOG1246|consen  474 SHDELALLNAENPVKIRKQLSLASDKNDDLAGESKKWLEESGRSKLVIEKY---ERYLLESLP------------DDMLE  538 (904)
T ss_pred             CHHHHHHhccccchhhhhhhccccccchhhhchhhhhhhhcccchhHHHHH---HHHHHHhcc------------chhhH
Confidence            999999999998876655443322 11111223333333333332222211   111112121            11238


Q ss_pred             ccccccccccccccccccccCCcceeccchhhhcCCCCCCeEEEEecCHHHHHHHHHHHHhhhhhHHHHHHHHHhhhccC
Q 005048          161 RECFSCFYDLHLSAAGCKCSPDRFACLKHANIFCSCEIDHRFVILRYSTDELNTLVEALEGGLDALKELASKNFKWADCS  240 (716)
Q Consensus       161 reC~iCk~~cyLSaV~C~C~p~~~~CL~Ha~~lCsC~~~~k~L~yRYt~eEL~~Lv~~Le~r~~~~~~W~~k~~~~l~~s  240 (716)
                      ++|..|+++||++++.|+|.+.++.||.|..++|+|....++++|||++++|..++.+++.+...+..|..++.+++...
T Consensus       539 ~~c~~ck~~~~l~~~~~~c~~~~~~cl~h~~~~~~~~~~~~~l~~r~~id~l~~~~~k~~~~~~~~~~~~~~~~~~~~~~  618 (904)
T KOG1246|consen  539 RQCEACKRNCFLSEIECKCKPKKLECLSHYKKLCSCPGTDKTLLLRTNIDELDALLDKLQLHELSKLPWFGRVDGALPSL  618 (904)
T ss_pred             HHHHHhcccHhhhhhhhcccccccccccchhhcCCCCccccEEEEecchhHHHHHhhhhhhhhhhcchhhhhhhhhhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             CCCC-CcccccccccccCcccccccccCCCCCcccccccCCCCccCCCCccccccccCCCCCCCccccccccccCCCCCC
Q 005048          241 DTDG-GLVKMDMESEVFPMDCCEQKESSSSSPRVENIVEGNGPCCSRSHVSSEVVQSEPQRGTSGLSASHVSVNSHNEGN  319 (716)
Q Consensus       241 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (716)
                      ..-+ ...+.-.+.                    ...++. .++     +. ++.++    .|          .      
T Consensus       619 ~~~~~~~~e~~~e~--------------------~~~~n~-~~~-----~~-k~~~~----rt----------~------  651 (904)
T KOG1246|consen  619 GFRGANLLEHAGEK--------------------ILGMNT-VQC-----YM-KVPGS----RT----------T------  651 (904)
T ss_pred             ccCCcchHHHHHHH--------------------hhcccc-cce-----ee-ccccc----cc----------h------
Confidence            6432 111110000                    000000 000     00 00000    00          0      


Q ss_pred             CcccccccccccccceeecccCCcCCCCCCcccccccCCChhhHHHhhhhhhhhhhhhhccccccccccccccccCCCCC
Q 005048          320 DETQVMNKKAKVKHEVCIDLNMDVIPDGNESKLLLSDSHGKEAIENLKAHLSACYQEKVLCSGTVKEQDTMQVRSDCNSS  399 (716)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~d~~~~~~~~~~~  399 (716)
                      .    .   ..+....|+++|++.. +                          |+-..|.+.+.-+              
T Consensus       652 ~----~---~~n~~~~s~~~n~~p~-~--------------------------~~~~~v~~~~~~~--------------  683 (904)
T KOG1246|consen  652 A----H---QENSALASININLGPG-D--------------------------CVWFAVPLEYWGV--------------  683 (904)
T ss_pred             h----H---HHHHHHhhhhccCCcc-c--------------------------ceeeecccchhHH--------------
Confidence            0    0   0112223333333221 0                          0111111111000              


Q ss_pred             CCCCCCCCCCCCCcccccCccccccccccccccCCCcccCCCccccccccccccCCccccccCccccccccCCceeEEee
Q 005048          400 NSHKDPNKDQPSCSRVIEGTCSFDVKKLFGVDLSLPHQQSKLPLVDFLKTDTINGSNVRTSVTDQRFQKKLETCVEPINF  479 (716)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~llsL  479 (716)
                                      ....|...           ++...                       .    ..+.++.+...+
T Consensus       684 ----------------~~~~~~~~-----------~~~~~-----------------------~----~~~w~~~~~~l~  709 (904)
T KOG1246|consen  684 ----------------VEDACEKH-----------NLKYS-----------------------D----SSVWPSSEEELL  709 (904)
T ss_pred             ----------------HHHHHhhc-----------ccccc-----------------------c----hhccchhhHHHH
Confidence                            00000000           00000                       0    000011344567


Q ss_pred             eeeecCCCccCCCcccCCCeEEEEEeccccCC-CceeEEEEEEeeCCCCCceEEEEeC---CCCC---CeEEcCChhHHH
Q 005048          480 GCVMCGKLWCSKQAIFPKGFRSRVNFYSVLNP-EKVCNYISEVLDAGLLGPLFKVTLE---ECPS---ETFVNVSAQKCW  552 (716)
Q Consensus       480 G~Iv~dr~fHse~yIyPvGF~S~R~Y~S~~dP-~~rc~Y~ceIlD~G~~~PlFrVt~e---d~P~---~~f~g~Spt~cW  552 (716)
                      |.++....|-++....+-++.++..+..+.+| +...+|+.++++++...|+|++...   ..+.   .++.......+|
T Consensus       710 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  789 (904)
T KOG1246|consen  710 NLVIPVQKFIQKAGDLVYVGNGTVHWVQVLGFCINVSWNVSESTFAQLALALFRHDHNIESKHPSSVPMSFKVWEMAEKE  789 (904)
T ss_pred             hccchHHHHHhccccccccCCceEEEeeecCccccceecccccchhhhhcchhhhhhhhhccCcccchhhhhhhhHhhcc
Confidence            77787788999999999999999999999999 9999999999999988999999998   6666   788899999999


Q ss_pred             HHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCcccccCCCCHHHH
Q 005048          553 EMVLQRLNQEIERQGGLHERGLPHPQSLQSIDGLEMFGFLSSPII  597 (716)
Q Consensus       553 ~~VlkrIn~~i~~r~~~G~~~Lp~l~~~~sisG~emFGLs~P~I~  597 (716)
                      .++..+...++.+.......++..++.-..+++-.++++..|.+.
T Consensus       790 ~~~~~~~~~~~~k~c~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~  834 (904)
T KOG1246|consen  790 VMVSDRKRFEAKKLCLKRSLAKSQLECELAIDEFHEICVAVPEKV  834 (904)
T ss_pred             hhhcchhHHHHHHHhhhhhhhhhhhhHHHHHhhhhheecccCCCc
Confidence            999988887766521122222323344567889999999988876

>smart00542 FYRC "FY-rich" domain, C-terminal region Back     alignment and domain information
>PF05965 FYRC: F/Y rich C-terminus; InterPro: IPR003889 The "FY-rich" domain C-terminal region is sometimes closely juxtaposed with the N-terminal region (IPR003888 from INTERPRO), but sometimes is far distant Back     alignment and domain information
>KOG0958 consensus DNA damage-responsive repressor GIS1/RPH1, jumonji superfamily [Replication, recombination and repair] Back     alignment and domain information
>PF05964 FYRN: F/Y-rich N-terminus; InterPro: IPR003888 The "FY-rich" domain N-terminal region is sometimes closely juxtaposed with the C-terminal region (IPR003889 from INTERPRO), but sometimes is far distant Back     alignment and domain information
>PF02928 zf-C5HC2: C5HC2 zinc finger; InterPro: IPR004198 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>smart00541 FYRN "FY-rich" domain, N-terminal region Back     alignment and domain information
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query716
2xml_A348 Crystal Structure Of Human Jmjd2c Catalytic Domain 3e-16
2oq6_A381 Crystal Structure Of Jmjd2a Complexed With Histone 4e-16
4hon_A330 Crystal Structure Of Human Jmjd2d/kdm4d In Complex 5e-16
3dxu_A337 The Crystal Structure Of Core Jmjd2d Complexed With 5e-16
2p5b_A352 The Complex Structure Of Jmjd2a And Trimethylated H 5e-16
3dxt_A354 Crystal Structure Of The Catalytic Core Domain Of J 5e-16
2gp3_A349 Crystal Structure Of The Catalytic Core Domain Of J 5e-16
2pxj_A347 The Complex Structure Of Jmjd2a And Monomethylated 5e-16
2wwj_A348 Structure Of Jmjd2a Complexed With Inhibitor 10a Le 5e-16
4hoo_A330 Crystal Structure Of Human Jmjd2d/kdm4d Apoenzyme L 5e-16
2w2i_A358 Crystal Structure Of The Human 2-Oxoglutarate Oxyge 4e-15
3opt_A373 Crystal Structure Of The Rph1 Catalytic Core With A 9e-12
2wzo_A146 The Structure Of The Fyr Domain Length = 146 9e-04
>pdb|2XML|A Chain A, Crystal Structure Of Human Jmjd2c Catalytic Domain Length = 348 Back     alignment and structure 
Iteration: 1

 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 48/67 (71%)
Query: 2   FLVEQVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDW 61
           FL  ++T +SPSVLK  G+P   + Q +GEF++TFP  YH+GFN GFNCAE+ N A V W
Sbjct: 240 FLRHKMTLISPSVLKKYGIPFDKITQEAGEFMITFPYGYHAGFNHGFNCAESTNFATVRW 299
Query: 62  LAHGQQA 68
           + +G+ A
Sbjct: 300 IDYGKVA 306
>pdb|2OQ6|A Chain A, Crystal Structure Of Jmjd2a Complexed With Histone H3 Peptide Trimethylated At Lys9 Length = 381 Back     alignment and structure
>pdb|4HON|A Chain A, Crystal Structure Of Human Jmjd2d/kdm4d In Complex With An H3k9me3 Peptide And 2-oxoglutarate Length = 330 Back     alignment and structure
>pdb|3DXU|A Chain A, The Crystal Structure Of Core Jmjd2d Complexed With Fe And N- Oxalylglycine Length = 337 Back     alignment and structure
>pdb|2P5B|A Chain A, The Complex Structure Of Jmjd2a And Trimethylated H3k36 Peptide Length = 352 Back     alignment and structure
>pdb|3DXT|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Jmjd2d Length = 354 Back     alignment and structure
>pdb|2GP3|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Jmjd2a Length = 349 Back     alignment and structure
>pdb|2PXJ|A Chain A, The Complex Structure Of Jmjd2a And Monomethylated H3k36 Peptide Length = 347 Back     alignment and structure
>pdb|2WWJ|A Chain A, Structure Of Jmjd2a Complexed With Inhibitor 10a Length = 348 Back     alignment and structure
>pdb|4HOO|A Chain A, Crystal Structure Of Human Jmjd2d/kdm4d Apoenzyme Length = 330 Back     alignment and structure
>pdb|2W2I|A Chain A, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase Loc390245 Length = 358 Back     alignment and structure
>pdb|3OPT|A Chain A, Crystal Structure Of The Rph1 Catalytic Core With A-Ketoglutarate Length = 373 Back     alignment and structure
>pdb|2WZO|A Chain A, The Structure Of The Fyr Domain Length = 146 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query716
4ask_A510 Lysine-specific demethylase 6B; oxidoreductase, KD 1e-35
2wzo_A146 Transforming growth factor beta regulator 1; nucle 7e-32
3avr_A531 Lysine-specific demethylase 6A; cupin superfamily, 8e-31
3dxt_A354 JMJC domain-containing histone demethylation PROT; 1e-25
2ox0_A381 JMJC domain-containing histone demethylation PROT; 4e-24
2xxz_A332 Lysine-specific demethylase 6B; oxidoreductase, hi 3e-23
3opt_A373 DNA damage-responsive transcriptional repressor R; 2e-22
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-07
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* Length = 510 Back     alignment and structure
 Score =  140 bits (354), Expect = 1e-35
 Identities = 37/225 (16%), Positives = 72/225 (32%), Gaps = 26/225 (11%)

Query: 2   FLVEQVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDW 61
             +          L A  +PVY  VQ  G+ V       H     G+    A NV P+  
Sbjct: 292 DYLTGSWWPILDDLYASNIPVYRFVQRPGDLVWINAGTVHWVQATGWCNNIAWNVGPLTA 351

Query: 62  --LAHGQQAVELYSEQHRKTSLSHDKLLFGSVQAAIKALWELSVLQKKTPGNRKWKDACG 119
                  +  E    ++ K+ +    + +   +    +  +L  + K             
Sbjct: 352 YQYQLALERYEWNEVKNVKSIVPMIHVSWNVARTVKISDPDLFKMIKF------------ 399

Query: 120 KDGVLTKAIKTRVQMKKEGLQKLPSYFKLQKMEIDFDLKTERECFSC----FYDLHLSAA 175
               L +++K   Q+++E L +     K    +     +    C  C    F  L +++ 
Sbjct: 400 ---CLLQSMK-HCQVQRESLVRAG---KKIAYQGRVKDEPAYYCNECDVEVFNILFVTSE 452

Query: 176 GCKCSPDRFACLKHANIFCSCEIDHRFVILRYSTDELNTLVEALE 220
               +     C   A    +  +    V+ +Y T+EL    +A  
Sbjct: 453 NGSRNTYLVHCEGCARRRSAG-LQGVVVLEQYRTEELAQAYDAFT 496
>2wzo_A Transforming growth factor beta regulator 1; nucleus, cell cycle, tumor suppressor; 1.60A {Homo sapiens} Length = 146 Back     alignment and structure
>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A* Length = 531 Back     alignment and structure
>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 2w2i_A* Length = 354 Back     alignment and structure
>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A* Length = 381 Back     alignment and structure
>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens} Length = 332 Back     alignment and structure
>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A* Length = 373 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query716
2wzo_A146 Transforming growth factor beta regulator 1; nucle 100.0
3avr_A531 Lysine-specific demethylase 6A; cupin superfamily, 99.92
3dxt_A354 JMJC domain-containing histone demethylation PROT; 99.86
2ox0_A381 JMJC domain-containing histone demethylation PROT; 99.86
3opt_A373 DNA damage-responsive transcriptional repressor R; 99.85
4ask_A510 Lysine-specific demethylase 6B; oxidoreductase, KD 99.76
2xxz_A332 Lysine-specific demethylase 6B; oxidoreductase, hi 99.59
2ypd_A392 Probable JMJC domain-containing histone demethyla 93.27
>2wzo_A Transforming growth factor beta regulator 1; nucleus, cell cycle, tumor suppressor; 1.60A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.2e-43  Score=337.28  Aligned_cols=143  Identities=22%  Similarity=0.422  Sum_probs=131.7

Q ss_pred             ccccccccCCceeEEeeeeeecCC-CccCCCcccCCCeEEEEEeccccCCCceeEEEEEEeeCCCCCceEEEEeCCCCCC
Q 005048          463 DQRFQKKLETCVEPINFGCVMCGK-LWCSKQAIFPKGFRSRVNFYSVLNPEKVCNYISEVLDAGLLGPLFKVTLEECPSE  541 (716)
Q Consensus       463 ~~~~~~~~~~sv~llsLG~Iv~dr-~fHse~yIyPvGF~S~R~Y~S~~dP~~rc~Y~ceIlD~G~~~PlFrVt~ed~P~~  541 (716)
                      +|.+|..++ +++|+|||+|++++ +|||++||||+||+++|+|||++||+++|+|+|+|+|+| .+|+|+|+++|+|++
T Consensus         2 ~p~lP~~~g-~l~v~slG~i~~~~~~fh~~~~IyPvGy~~~R~y~s~~dp~~~~~Y~c~I~d~~-~~P~F~V~~e~~~~~   79 (146)
T 2wzo_A            2 RPVFPIGLG-GLTVYSLGEIITDRPGFHDESAIYPVGYCSTRIYASMKCPDQKCLYTCQIKDGG-VQPQFEIVPEDDPQN   79 (146)
T ss_dssp             CCCCCEEET-TEEEEEEEECCCSSGGGBCSSCBCCEEEEEEEEEECSSCTTSEEEEEEEEEECS-SSEEEEEEETTCGGG
T ss_pred             CceecEEEC-CEEEEEeeeEccCCCCccCCCceeCCCEEEEEEEecccCCCCeEEEEEEEEECC-CcceeEEEecCCCCc
Confidence            588998888 79999999999998 699999999999999999999999999999999999987 699999999999999


Q ss_pred             eEEcCChhHHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCcccccCCCCHHHHHHHHhCCCCcchhhccccccc
Q 005048          542 TFVNVSAQKCWEMVLQRLNQEIERQGGLHERGLPHPQSLQSIDGLEMFGFLSSPIIQAIEALDPNHLCMEYWNHKLL  618 (716)
Q Consensus       542 ~f~g~Spt~cW~~VlkrIn~~i~~r~~~G~~~Lp~l~~~~sisG~emFGLs~P~I~~lIEsLP~a~~C~~Y~~~~~~  618 (716)
                      .|+|.||++||++|+++|++.+      |+. +    +..+++|+|||||++|.|+++||+|||+++|++|+|++|+
T Consensus        80 ~~~g~Sp~~~W~~il~~i~~~~------~~~-~----~~~~~sG~~~FGl~~p~V~~lie~Lpg~~~C~~Y~~~~f~  145 (146)
T 2wzo_A           80 AIVSSSADACHAELLRTISTTM------GKL-M----PNLLPAGADFFGFSHPAIHNLIQSCPGARKCINYQWVKFD  145 (146)
T ss_dssp             CEEESSHHHHHHHHHHHHHHHH------TCC-C----TTCCCCHHHHHTTTSHHHHHHHTTSTTGGGCTTCCCCCCC
T ss_pred             eEEeCChHHHHHHHHHHHHHHh------cCc-C----CCCCCChhheecCCCHHHHHHHHhCCCchhcccCCcEEee
Confidence            9999999999999999999873      211 2    2346899999999999999999999999999999999985
>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A* Back     alignment and structure
>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 4hon_A* 4hoo_A 2w2i_A* Back     alignment and structure
>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A* Back     alignment and structure
>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A* Back     alignment and structure
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* 4eyu_A* 4ez4_A* 4ezh_A* Back     alignment and structure
>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens} Back     alignment and structure
>2ypd_A Probable JMJC domain-containing histone demethyla PROT EIN 2C; oxidoreductase; 2.10A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00