Citrus Sinensis ID: 005060

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710------
MAVVGEEGKASGSRRMAAHHRKHMDDALPTKHKPAEAGGKNELYNELWRACAGPLVYVPRVGDIVYYFLQGHMEQVEAYNSQDDKAELPIYNLPPKILCEVVYAQLKAEPGTDEVFAQITLLPRPEIDELSLEVGNSPPLPPKLNVCSFSKKLTPSDTSTHGGFSVPKRHADECLPPLDMSKDPPLQELVAKDLHGLEWRFRHIYRGQPKRHLLTSGWSVFVTSKKLVAGDVCIFLRGGDGELRVGVRRAMKLQNNASTSVISSLSMQHGILAGAFHAISTGTRFTVYYHPWTRPAEFLVPFSQYMKSAEIDYSIGTRFRMVFEGEECADQRIAGTVVGTEDVDHIRWPASEWRCLKVKWDATTDSITRPARVSPWNIEPIERTHKRPASVQHQQKRLRPNDASSPWFSSLFSNGVFQGQENRVTGVKALGAAKTPLLPSLVRPPNPVWAQMQSGLENKLKFPMHDPFYMCLNRMVSLPGGSLMSPGLSNHWPASPFAPYEVCETAAQSKNLSVPNASSENSGSQMCMALELKDENRTPLAQPNGGSRYMLFGVNLVNSPPELPSPQMATSNELESPCSVPPTSQSSISETIQVSEPSKSVSGILSEKQCKNCYVSRSCTKVIKFGTALGRSVDLTRFHGYDELISELDQMFDFNGSLIDGNSGFHIAYMDDEGDMMLVGDNPWQDFQCAVRRMFICPKEDIDGVIPSSPNPTPPQ
ccccccccccccccHHHHHHccccccccccccccccccccccccHHHHHHcccccccccccccEEEEEcccHHHHHHccccccccccccccccccccEEEEEEEEEEEccccccEEEEEEEccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccEEEEEEccccEEEEEEEEEcccccEEccccccccccccccccccEEEEEEccccccEEEEEEEEccccccccccccccccccccHHHHHHccccccEEEEEEccccccccccccHHHHHHHHccccccccEEEEEEcccccccEEEEEEEEEEccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccEEEEEEEcccEEEEEcccccccHHHHHHHHHHHHccccccccccccEEEEEEcccccEEEcccccHHHHHHcccEEEEcccccccccccccccccccc
cEEEEccccccccHHHHHHHccccEEccccccccccccccccccHHHHHHHcccccEccccccEEEEcccccHHHHHHcccccHccccccccccccEEEEEEEEEEEccccccEEEEEEEEcccccccccccccccccccccccccHHHHHEcccccccccccccHHHHHHHHHcccccccccccHHHHHHHHccccEEEEEEEEccccccEEEccccEEEEcccEEEcccEEEEEEcccccEEEEEEEccccccccccccccccccHHHHHHHHHHHHHccccEEEEEccccccccEEEEHHHHHHHHHccccEcEEEEEEEcccccccEEEEEEEEEccccccccccccccEEEEEEcccccccccccccccccEEcccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccEEEEEccccHHHHHHHHHHHHcccccccccccccEEEEEcccccEEEEccccHHHHHHHHEEEEEEcHHHHHHcccccccccccc
mavvgeegkasgsRRMAAHHRKhmddalptkhkpaeaggkneLYNELWRAcagplvyvprvGDIVYYFLQGHMEQVEaynsqddkaelpiynlppkiLCEVVYAQlkaepgtdeVFAQItllprpeidelslevgnspplppklnvcsfskkltpsdtsthggfsvpkrhadeclppldmskdpplqeLVAKDLHGLEWRFrhiyrgqpkrhlltsgWSVFVtskklvagdvciflrggdgelRVGVRRAMKLQNNASTSVISSLSMQHGILAGAFHaistgtrftvyyhpwtrpaeflvpfsqymKSAEIDYSIgtrfrmvfegeecadqriagtvvgtedvdhirwpasewrclkvkwdattdsitrparvspwniepierthkrpasvqhqqkrlrpndasspwfsslfsngvfqgqenrVTGVKAlgaaktpllpslvrppnpvwAQMQSGlenklkfpmhdpfYMCLNRmvslpggslmspglsnhwpaspfapyevCETAAQsknlsvpnassensgsqMCMALElkdenrtplaqpnggsrymLFGVNlvnsppelpspqmatsnelespcsvpptsqssisetiqvsepsksvsgilsekqckncyvsrsctKVIKFGTAlgrsvdltrfhgYDELISELDQMFdfngslidgnsgfhiaymddegdmmlvgdnpwqDFQCAVRRMficpkedidgvipsspnptppq
mavvgeegkasgsrrMAAHHRkhmddalptkhKPAEAGGKNELYNELWRACAGPLVYVPRVGDIVYYFLQGHMEQVEAYNSQDDKAELPIYNLPPKILCEVVYAQLKAEPGTDEVFAQITLLPRPEIDELSLEVGNSPPLPPKLNVCSFSKKLTPSDTSTHGGFSVPKRHADECLPPLDMSKDPPLQELVAKDLHGLEWRFRHIYRGQPKRHLLTSGWSVFVTSKKLVAGDVCIFLRGGDGELRVGVRRAMKLQNNASTSVISSLSMQHGILAGAFHAISTGTRFTVYYHPWTRPAEFLVPFSQYMKSAEIDYSIGTRFRMVFEGEECADqriagtvvgtedvdhirwpasewrclkvkwdattdsitrparvspwniepierthkrpasvqhqqKRLRPNDASSPWFSSLFSNGVFQGQENRVTGVKALGAAKtpllpslvrppNPVWAQMQSGLENKLKFPMHDPFYMCLNRMVSLPGGSLMSPGLSNHWPASPFAPYEVCETAAQSKNlsvpnassenSGSQMCMALELKDENRTPLAQPNGGSRYMLFGVNLVNSPPELPSPQMATSNELESPCSVPPTSQSSISETIQVSEPSKSVSGILSEKQCKNCYVSRSCTKVIKfgtalgrsvdlTRFHGYDELISELDQMFDFNGSLIDGNSGFHIAYMDDEGDMMLVGDNPWQDFQCAVRRMFICPKedidgvipsspnptppq
MAVVGEEGKASGSRRMAAHHRKHMDDALPTKHKPAEAGGKNELYNELWRACAGPLVYVPRVGDIVYYFLQGHMEQVEAYNSQDDKAELPIYNLPPKILCEVVYAQLKAEPGTDEVFAQITLLPRPEIDELSLEVGNSPPLPPKLNVCSFSKKLTPSDTSTHGGFSVPKRHADECLPPLDMSKDPPLQELVAKDLHGLEWRFRHIYRGQPKRHLLTSGWSVFVTSKKLVAGDVCIFLRGGDGELRVGVRRAMKLQNNASTSVISSLSMQHGILAGAFHAISTGTRFTVYYHPWTRPAEFLVPFSQYMKSAEIDYSIGTRFRMVFEGEECADQRIAGTVVGTEDVDHIRWPASEWRCLKVKWDATTDSITRPARVSPWNIEPIERTHKRPASVQHQQKRLRPNDASSPWFSSLFSNGVFQGQENRVTGVKALGAAKTPLLPSLVRPPNPVWAQMQSGLENKLKFPMHDPFYMCLNRMVSLPGGSLMSPGLSNHWPASPFAPYEVCETAAQSKNLSVPNASSENSGSQMCMALELKDENRTPLAQPNGGSRYMLFGVNLVNSPPELPSPQMATSNELESPCSVPPTSQSSISETIQVSEPSKSVSGILSEKQCKNCYVSRSCTKVIKFGTALGRSVDLTRFHGYDELISELDQMFDFNGSLIDGNSGFHIAYMDDEGDMMLVGDNPWQDFQCAVRRMFICPKEDIDGVIPSSPNPTPPQ
*****************************************ELYNELWRACAGPLVYVPRVGDIVYYFLQGHMEQVEAYNSQDDKAELPIYNLPPKILCEVVYAQLKAEPGTDEVFAQITLLPRP**************************************************************ELVAKDLHGLEWRFRHIYRGQPKRHLLTSGWSVFVTSKKLVAGDVCIFLRGGDGELRVGVRRAMKLQNNASTSVISSLSMQHGILAGAFHAISTGTRFTVYYHPWTRPAEFLVPFSQYMKSAEIDYSIGTRFRMVFEGEECADQRIAGTVVGTEDVDHIRWPASEWRCLKVKWDATTDSITRPARVSPWNI****************************WFSSLFSNGVFQGQENRVTGVKALGAAKTPLLPSLVRPPNPVWAQMQSGLENKLKFPMHDPFYMCLNRMVSLPGGSLM**GLSNHWPASPFAPYEVC*********************************************YMLFGVNL************************************************LSEKQCKNCYVSRSCTKVIKFGTALGRSVDLTRFHGYDELISELDQMFDFNGSLIDGNSGFHIAYMDDEGDMMLVGDNPWQDFQCAVRRMFICPKEDIDGV***********
********************************************NELWRACAGPLVYVPRVGDIVYYFLQGHMEQVEA**********PIYNLPPKILCEVVYAQLKAEPGTDEVFAQITLLPRP**********************SFSKKLTPSDTSTHGGFSVPKRHADECLPPLDMSKDPPLQELVAKDLHGLEWRFRHIYRGQPKRHLLTSGWSVFVTSKKLVAGDVCIFLRGGDGELRVGVRRAM*********************AGAFHAISTGTRFTVYYHPWTRPAEFLVPFSQYMKSAEIDYSIGTRFRMVFEGEECADQRIAGTVVGTEDVDHIRWPASEWRCLKVKWDATTDSITRPARVSPWNIEPIE*******************************************************************************************************************************************************************************************************PTSQSSISETIQVSEPSKSVSGILSEKQCKNCYVSRSCTKVIKFGTALGRSVDLTRFHGYDELISELDQMFDFNGSLIDGNSGFHIAYMDDEGDMMLVGDNPWQDFQCAVRRMFI********************
******************************KHKPAEAGGKNELYNELWRACAGPLVYVPRVGDIVYYFLQGHMEQVEAYNSQDDKAELPIYNLPPKILCEVVYAQLKAEPGTDEVFAQITLLPRPEIDELSLEVGNSPPLPPKLNVCSFSKKLTPSDTSTHGGFSVPKRHADECLPPLDMSKDPPLQELVAKDLHGLEWRFRHIYRGQPKRHLLTSGWSVFVTSKKLVAGDVCIFLRGGDGELRVGVRRAMKLQNNASTSVISSLSMQHGILAGAFHAISTGTRFTVYYHPWTRPAEFLVPFSQYMKSAEIDYSIGTRFRMVFEGEECADQRIAGTVVGTEDVDHIRWPASEWRCLKVKWDATTDSITRPARVSPWNIEPIERTH*****************ASSPWFSSLFSNGVFQGQENRVTGVKALGAAKTPLLPSLVRPPNPVWAQMQSGLENKLKFPMHDPFYMCLNRMVSLPGGSLMSPGLSNHWPASPFAPYEVCETAAQ****************QMCMALELKDENRTPLAQPNGGSRYMLFGVNLVNSPPELPS***************************************LSEKQCKNCYVSRSCTKVIKFGTALGRSVDLTRFHGYDELISELDQMFDFNGSLIDGNSGFHIAYMDDEGDMMLVGDNPWQDFQCAVRRMFICPKEDIDGVIPS********
*************************DA**T*********KNELYNELWRACAGPLVYVPRVGDIVYYFLQGHMEQVEAYNSQDDKAELPIYNLPPKILCEVVYAQLKAEPGTDEVFAQITLLPRP******************LNVCSFSKKLTPSDTSTHGGFSVPKRHADECLPPLDMSKDPPLQELVAKDLHGLEWRFRHIYRGQPKRHLLTSGWSVFVTSKKLVAGDVCIFLRGGDGELRVGVRRAMK***************QHGILAGAFHAISTGTRFTVYYHPWTRPAEFLVPFSQYMKSAEIDYSIGTRFRMVFEGEECADQRIAGTVVGTEDVDHIRWPASEWRCLKVKWDATTDSITRPARVSPWNIEPIERTHKRPAS*********************************************************************************************************************************************************************LVN*********************************************************SRSCTKVIKFGTALGRSVDLTRFHGYDELISELDQMFDFNGSLIDGNSGFHIAYMDDEGDMMLVGDNPWQDFQCAVRRMFICPKEDIDGV***********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MAVVGEEGKASGSRRMAAHHRKHMDDALPTKHKPAEAGGKNELYNELWRACAGPLVYVPRVGDIVYYFLQGHMEQVEAYNSQDDKAELPIYNLPPKILCEVVYAQLKAEPGTDEVFAQITLLPRPEIDELSLEVGNSPPLPPKLNVCSFSKKLTPSDTSTHGGFSVPKRHADECLPPLDMSKDPPLQELVAKDLHGLEWRFRHIYRGQPKRHLLTSGWSVFVTSKKLVAGDVCIFLRGGDGELRVGVRRAMKLQNNASTSVISSLSMQHGILAGAFHAISTGTRFTVYYHPWTRPAEFLVPFSQYMKSAEIDYSIGTRFRMVFEGEECADQRIAGTVVGTEDVDHIRWPASEWRCLKVKWDATTDSITRPARVSPWNIEPIERTHKRPASVQHQQKRLRPNDASSPWFSSLFSNGVFQGQENRVTGVKALGAAKTPLLPSLVRPPNPVWAQMQSGLENKLKFPMHDPFYMCLNRMVSLPGGSLMSPGLSNHWPASPFAPYEVCETAAQSKNLSVPNASSENSGSQMCMALELKDENRTPLAQPNGGSRYMLFGVNLVNSPPELPSPQMATSNELESPCSVPPTSQSSISETIQVSEPSKSVSGILSEKQCKNCYVSRSCTKVIKFGTALGRSVDLTRFHGYDELISELDQMFDFNGSLIDGNSGFHIAYMDDEGDMMLVGDNPWQDFQCAVRRMFICPKEDIDGVIPSSPNPTPPQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query716 2.2.26 [Sep-21-2011]
Q5JK20808 Auxin response factor 4 O yes no 0.912 0.808 0.425 1e-148
Q6YVY0678 Auxin response factor 7 O no no 0.849 0.896 0.438 1e-140
Q8L7G0665 Auxin response factor 1 O yes no 0.867 0.933 0.418 1e-133
Q94JM3 859 Auxin response factor 2 O no no 0.505 0.421 0.618 1e-131
Q9XED8638 Auxin response factor 9 O no no 0.842 0.945 0.415 1e-128
Q2R3F5 853 Auxin response factor 23 no no 0.529 0.444 0.583 1e-127
A2ZET6 853 Auxin response factor 23 N/A no 0.529 0.444 0.583 1e-127
Q5NB85699 Auxin response factor 1 O no no 0.889 0.911 0.389 1e-120
Q2QQX6 841 Auxin response factor 24 no no 0.513 0.437 0.582 1e-118
Q9LQE8605 Putative auxin response f no no 0.807 0.955 0.370 1e-114
>sp|Q5JK20|ARFD_ORYSJ Auxin response factor 4 OS=Oryza sativa subsp. japonica GN=ARF4 PE=2 SV=1 Back     alignment and function desciption
 Score =  525 bits (1351), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 325/764 (42%), Positives = 440/764 (57%), Gaps = 111/764 (14%)

Query: 43  LYNELWRACAGPLVYVPRVGDIVYYFLQGHMEQVEAYNSQDDKAELPIYNLPPKILCEVV 102
           LY+ELW ACAGPLV VPRVGD+V+YF QGH+EQVEA  +Q   +++ +Y+LP K+LC V+
Sbjct: 21  LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVADSQMRLYDLPSKLLCRVL 80

Query: 103 YAQLKAEPGTDEVFAQITLLPRPEIDELSLE--VGNSPPLPPKLNVCSFSKKLTPSDTST 160
             +LKAE  TDEV+AQ+ L+P PE +E+++E     S P+  +  V SF K LT SDTST
Sbjct: 81  NVELKAEQDTDEVYAQVMLMPEPEQNEMAVEKTTPTSGPVQARPPVRSFCKTLTASDTST 140

Query: 161 HGGFSVPKRHADECLPPLDMSKDPPLQELVAKDLHGLEWRFRHIYRGQPKRHLLTSGWSV 220
           HGGFSV +RHADECLPPLDM++ PP QELVAKDLH ++WRFRHI+RGQP+RHLL SGWSV
Sbjct: 141 HGGFSVLRRHADECLPPLDMTQSPPTQELVAKDLHSMDWRFRHIFRGQPRRHLLQSGWSV 200

Query: 221 FVTSKKLVAGDVCIFLRGGDGELRVGVRRAMKLQNNASTSVISSLSMQHGILAGAFHAIS 280
           FV+SK+LVAGD  IFLRG +GELRVGVRRAM+  +N  +SVISS SM  G+LA A+HAI+
Sbjct: 201 FVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQLSNVPSSVISSQSMHLGVLATAWHAIN 260

Query: 281 TGTRFTVYYHPWTRPAEFLVPFSQYMKSAEIDYSIGTRFRMVFEGEECADQRIAGTVVGT 340
           T + FTVYY P T P+EF++P+ QYM+S + +YS+G RFRM FEGEE  +QR  GT++G+
Sbjct: 261 TKSMFTVYYKPRTSPSEFIIPYDQYMESVKNNYSVGMRFRMRFEGEEAPEQRFTGTIIGS 320

Query: 341 EDVDHIRWPASEWRCLKVKWDATT-----DSIT----RPARVSPWNIEPIERTHK----- 386
           E++D + WP S WR LKV+WD  +     D ++     PA   P N  P+ R  +     
Sbjct: 321 ENLDPV-WPESSWRSLKVRWDEPSTIPRPDRVSPWKIEPASSPPVNPLPLSRVKRPRPNA 379

Query: 387 ---RPASVQHQQKRLRPNDASSPWFSSLFSNGVFQGQE-------------NRVTGVKAL 430
               P S    ++     D          ++ V QGQE             + VT  K +
Sbjct: 380 PPASPESPILTKEAATKVDTDPAQAQRSQNSTVLQGQEQMTLRSNLTESNDSDVTAHKPM 439

Query: 431 ------GAAKTPLLPSLVRPPNPVWAQM----------QSGLE---NKLKFPMHDPFYMC 471
                  AAK   L    RPP   W Q+          +SG +   +   F M + F   
Sbjct: 440 MWSPSPNAAKAHPLTFQQRPPMDNWMQLGRRETDFKDVRSGSQSFGDSPGFFMQN-FDEA 498

Query: 472 LNRMVSLPGGSLMSPGLSNHWPASPF-----APYEVCETAAQ----SKNLSVPNASS--- 519
            NR+ S         G + H+ + P+      P    E++ Q    SK L   N  S   
Sbjct: 499 PNRLTSF-KNQFQDQGSARHF-SDPYYYVSPQPSLTVESSTQMHTDSKELHFWNGQSTVY 556

Query: 520 -------------ENSGSQMCMALELKDENRT--PLA-------QPNGGSRYMLFG--VN 555
                        +NS S +  +    ++ R   P A       +   GS + +FG  V+
Sbjct: 557 GNSRDRPQNFRFEQNSSSWLNQSFARPEQPRVIRPHASIAPVELEKTEGSGFKIFGFKVD 616

Query: 556 LVNSPPELPSPQMATSNE--LESPCSVPPTSQSSISETIQVSEPSKSVSGILSEK----- 608
             N+P    S  MA ++E  L++P S+   +Q    +T  + E S S +G  +E      
Sbjct: 617 TTNAPNNHLSSPMAATHEPMLQTPSSL---NQLQPVQTDCIPEVSVSTAGTATENEKSGQ 673

Query: 609 ---------QCKNCYVS-RSCTKVIKFGTALGRSVDLTRFHGYDELISELDQMFDFNGSL 658
                    Q K    S RSCTKV K G ALGRSVDL++F  YDEL +ELD+MF+F+G L
Sbjct: 674 QAQQSSKDVQSKTQVASTRSCTKVHKQGVALGRSVDLSKFSNYDELKAELDKMFEFDGEL 733

Query: 659 IDGNSGFHIAYMDDEGDMMLVGDNPWQDFQCAVRRMFICPKEDI 702
           +  N  + I Y D+EGDMMLVGD+PW++F   VR+++I  KE++
Sbjct: 734 VSSNKNWQIVYTDNEGDMMLVGDDPWEEFCSIVRKIYIYTKEEV 777
Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q6YVY0|ARFG_ORYSJ Auxin response factor 7 OS=Oryza sativa subsp. japonica GN=ARF7 PE=2 SV=1 Back     alignment and function description
>sp|Q8L7G0|ARFA_ARATH Auxin response factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2 Back     alignment and function description
>sp|Q94JM3|ARFB_ARATH Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2 Back     alignment and function description
>sp|Q9XED8|ARFI_ARATH Auxin response factor 9 OS=Arabidopsis thaliana GN=ARF9 PE=1 SV=1 Back     alignment and function description
>sp|Q2R3F5|ARFW_ORYSJ Auxin response factor 23 OS=Oryza sativa subsp. japonica GN=ARF23 PE=1 SV=2 Back     alignment and function description
>sp|A2ZET6|ARFW_ORYSI Auxin response factor 23 OS=Oryza sativa subsp. indica GN=ARF23 PE=2 SV=1 Back     alignment and function description
>sp|Q5NB85|ARFA_ORYSJ Auxin response factor 1 OS=Oryza sativa subsp. japonica GN=ARF1 PE=2 SV=1 Back     alignment and function description
>sp|Q2QQX6|ARFX_ORYSJ Auxin response factor 24 OS=Oryza sativa subsp. japonica GN=ARF24 PE=2 SV=1 Back     alignment and function description
>sp|Q9LQE8|ARFN_ARATH Putative auxin response factor 14 OS=Arabidopsis thaliana GN=ARF14 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query716
359479836801 PREDICTED: auxin response factor 23-like 0.960 0.858 0.588 0.0
296086637696 unnamed protein product [Vitis vinifera] 0.935 0.962 0.599 0.0
255559342634 transcription factor, putative [Ricinus 0.789 0.891 0.546 1e-176
356503887 1043 PREDICTED: auxin response factor 7-like, 0.831 0.570 0.470 1e-156
301793205737 putative auxin response factor 2 [Ambore 0.895 0.869 0.471 1e-154
19352039791 auxin response factor 2 [Oryza sativa] 0.909 0.823 0.434 1e-152
115441981808 Os01g0927600 [Oryza sativa Japonica Grou 0.912 0.808 0.425 1e-146
218189656803 hypothetical protein OsI_05027 [Oryza sa 0.924 0.824 0.421 1e-146
224128584392 predicted protein [Populus trichocarpa] 0.526 0.961 0.666 1e-146
356570939630 PREDICTED: auxin response factor 2-like 0.812 0.923 0.427 1e-143
>gi|359479836|ref|XP_002270286.2| PREDICTED: auxin response factor 23-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  795 bits (2053), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/717 (58%), Positives = 503/717 (70%), Gaps = 29/717 (4%)

Query: 5   GEEGKASGSRRMAAHHRKHMDDALPTKHKPAEAGGKNELYNELWRACAGPLVYVPRVGDI 64
           GE G      RM         D L +K+   E    ++LY ELW  CAGPLV + R G  
Sbjct: 104 GEMGSGGDGERMRVDLEG---DGLQSKNIQDE---NDDLYTELWLGCAGPLVNILRAGQK 157

Query: 65  VYYFLQGHMEQVEAYNSQDDKAELPIYNLPPKILCEVVYAQLKAEPGTDEVFAQITLLPR 124
           V YF QGH+EQVEAY +QD + E+PIYNLP KI C+VVY QLKAE  TDEVFAQ+TLLP 
Sbjct: 158 VVYFPQGHIEQVEAYTNQDGQMEMPIYNLPSKIFCKVVYVQLKAEACTDEVFAQVTLLPE 217

Query: 125 PEIDELSLEVGNSPPLPPKLNVCSFSKKLTPSDTSTHGGFSVPKRHADECLPPLDMSKDP 184
            + +  S + GNS   P + +  SFSK LTPSDT+THGGFSVPKRHADECLPPLDM++ P
Sbjct: 218 AKQEWQSPDHGNSQFFPRRTHSYSFSKTLTPSDTNTHGGFSVPKRHADECLPPLDMTQQP 277

Query: 185 PLQELVAKDLHGLEWRFRHIYRGQPKRHLLTSGWSVFVTSKKLVAGDVCIFLRGGDGELR 244
           P+QEL+AKDLHG EWRFRHI+RGQPKRHLLTSGWS FVTSKKLVAGD CIFLRG +GELR
Sbjct: 278 PVQELIAKDLHGTEWRFRHIFRGQPKRHLLTSGWSQFVTSKKLVAGDACIFLRGANGELR 337

Query: 245 VGVRRAMKLQNNASTSVISSLSMQHGILAGAFHAISTGTRFTVYYHPWTRPAEFLVPFSQ 304
           VGVRRA +LQNN S SV+S  SMQHGILA AFHAISTGT FTVY+ PWT P EF++P+ Q
Sbjct: 338 VGVRRATRLQNNVSASVLSGHSMQHGILASAFHAISTGTMFTVYFRPWTSP-EFIIPYDQ 396

Query: 305 YMKSAEIDYSIGTRFRMVFEGEECADQRIAGTVVGTEDVDHIRWPASEWRCLKVKWDATT 364
           Y+KSAE +YS+GTRFRM+FEGEEC+ QR AGT+VG EDVD IRWP SEWR  KV+WD T+
Sbjct: 397 YIKSAENNYSVGTRFRMLFEGEECSQQRCAGTIVGIEDVDAIRWPNSEWRRFKVQWD-TS 455

Query: 365 DSITRPARVSPWNIEPIERTHKRPASVQHQQKRLRPNDASSPWFSSLFSN--------GV 416
           D    P RV+ WNIEPIE   K+  S+  Q KR RP D   P    L  +        GV
Sbjct: 456 DITPCPERVAAWNIEPIEFIKKKHTSILPQLKRARPTDPLCPAIPILVGDVEHTKIQSGV 515

Query: 417 FQGQENRVTGVKALGAAKTPLLPSLVRPPNPVWAQMQSGLENKLKFPMHDPFYMCLNRMV 476
            QGQEN   G      +K P L  +V PPN  W            FPMHDPFY C  + +
Sbjct: 516 LQGQENDDIGAHKPDTSKLPSL-LVVPPPNSDWGPQH--------FPMHDPFYQCPGKTI 566

Query: 477 SLPGGSLMSPGLSNHWPASPFAPYEVCETAAQSKNLSVPNASSENSGSQMCMALELKDEN 536
              G + +S G++N    + F     C+    S+NLS  N  S N   Q   ALE K  N
Sbjct: 567 LFQGENPLSSGIANGCSLT-FTYCGACDNVGGSRNLSFANLDSSNCEFQDWRALEPKG-N 624

Query: 537 RTPLAQPNGGSRYMLFGVNLVNSPPELPSPQMATSNELESPCSVPPTSQSSISETIQVSE 596
               AQ N   ++ LFGVNL+NSP ELPSPQ+A+S+EL+SPCS+PPTSQSSISE+IQ SE
Sbjct: 625 EASFAQQNRIDKFKLFGVNLINSPAELPSPQVASSSELQSPCSIPPTSQSSISESIQASE 684

Query: 597 PSKSVSGILSEKQCKNC--YVSRSCTKVIKFGTALGRSVDLTRFHGYDELISELDQMFDF 654
           PSKSVSG LS+KQCKNC   + RSCTKV+K+GTALGRS+DL RF GYDELI ELDQMFDF
Sbjct: 685 PSKSVSGDLSDKQCKNCCSVMVRSCTKVLKYGTALGRSIDLARFDGYDELIIELDQMFDF 744

Query: 655 NGSLIDGNSGFHIAYMDDEGDMMLVGDNPWQDFQCAVRRMFICPKEDIDGVIPSSPN 711
            GSL+DG+  +H+ Y DDEGDMML+GD PWQ+F+  V+R+FICPKE+ + +  ++P+
Sbjct: 745 GGSLMDGSCRWHVTYTDDEGDMMLLGDYPWQEFRSMVQRIFICPKEETERLNSATPS 801

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296086637|emb|CBI32272.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255559342|ref|XP_002520691.1| transcription factor, putative [Ricinus communis] gi|223540076|gb|EEF41653.1| transcription factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356503887|ref|XP_003520732.1| PREDICTED: auxin response factor 7-like, partial [Glycine max] Back     alignment and taxonomy information
>gi|301793205|emb|CBA11993.1| putative auxin response factor 2 [Amborella trichopoda] Back     alignment and taxonomy information
>gi|19352039|dbj|BAB85913.1| auxin response factor 2 [Oryza sativa] Back     alignment and taxonomy information
>gi|115441981|ref|NP_001045270.1| Os01g0927600 [Oryza sativa Japonica Group] gi|75222728|sp|Q5JK20.1|ARFD_ORYSJ RecName: Full=Auxin response factor 4; AltName: Full=OsARF2 gi|57900138|dbj|BAD88200.1| putative auxin response factor [Oryza sativa Japonica Group] gi|113534801|dbj|BAF07184.1| Os01g0927600 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|218189656|gb|EEC72083.1| hypothetical protein OsI_05027 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|224128584|ref|XP_002320368.1| predicted protein [Populus trichocarpa] gi|222861141|gb|EEE98683.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356570939|ref|XP_003553640.1| PREDICTED: auxin response factor 2-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query716
TAIR|locus:2174013 859 ARF2 "auxin response factor 2" 0.557 0.464 0.593 7.5e-148
TAIR|locus:2025991665 ARF1 "auxin response factor 1" 0.522 0.562 0.547 3.4e-128
TAIR|locus:2138096638 ARF9 "auxin response factor 9" 0.501 0.562 0.544 8.9e-128
TAIR|locus:2039124622 ARF11 "auxin response factor 1 0.530 0.610 0.537 6.5e-123
TAIR|locus:2076765602 ARF18 "auxin response factor 1 0.5 0.594 0.539 5.9e-120
TAIR|locus:2026145593 ARF12 "auxin response factor 1 0.530 0.640 0.461 1e-109
TAIR|locus:2014731605 ARF14 "auxin response factor 1 0.522 0.618 0.468 6.4e-108
TAIR|locus:2175098788 ARF4 "auxin response factor 4" 0.502 0.456 0.466 2.1e-107
TAIR|locus:2009298606 ARF21 "auxin response factor 2 0.523 0.618 0.449 3.5e-107
TAIR|locus:2036288598 ARF22 "auxin response factor 2 0.519 0.622 0.466 6.5e-106
TAIR|locus:2174013 ARF2 "auxin response factor 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1178 (419.7 bits), Expect = 7.5e-148, Sum P(2) = 7.5e-148
 Identities = 247/416 (59%), Positives = 290/416 (69%)

Query:     1 MAVVGEEGKASGSRRMAAHHRKHMDDALPTKHKPAEAGGKNELYNELWRACAGPLVYVPR 60
             ++V GE G+ S S R AA  R  +D        P  A     LY ELW ACAGPLV VPR
Sbjct:    31 VSVAGE-GQKSNSTRSAAAERA-LD--------PEAA-----LYRELWHACAGPLVTVPR 75

Query:    61 VGDIVYYFLQGHMEQVEAYNSQDDKAELPIYNLPPKILCEVVYAQLKAEPGTDEVFAQIT 120
               D V+YF QGH+EQVEA  +Q  + ++P+Y+LP K+LC V+   LKAE  TDEV+AQIT
Sbjct:    76 QDDRVFYFPQGHIEQVEASTNQAAEQQMPLYDLPSKLLCRVINVDLKAEADTDEVYAQIT 135

Query:   121 LLPRPEIDELSLEVGNSPPLPPKLNVCSFSKKLTPSDTSTHGGFSVPKRHADECLPPLDM 180
             LLP    DE ++E     P PP+  V SF K LT SDTSTHGGFSV +RHADECLPPLDM
Sbjct:   136 LLPEANQDENAIEKEAPLPPPPRFQVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDM 195

Query:   181 SKDPPLQELVAKDLHGLEWRFRHIYRGQPKRHLLTSGWSVFVTSKKLVAGDVCIFLRGGD 240
             S+ PP QELVAKDLH  EWRFRHI+RGQP+RHLL SGWSVFV+SK+LVAGD  IFLRG +
Sbjct:   196 SRQPPTQELVAKDLHANEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGEN 255

Query:   241 GELRVGVRRAMKLQNNASTSVISSLSMQHGILAGAFHAISTGTRFTVYYHPWTRPAEFLV 300
             GELRVGVRRAM+ Q N  +SVISS SM  G+LA A+HAISTGT FTVYY P T P+EF+V
Sbjct:   256 GELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRTSPSEFIV 315

Query:   301 PFSQYMKSAEIDYSIGTRFRMVFEGEECADQRIAGTVVGTEDVDHIRWPASEWRCLKVKW 360
             PF QYM+S + +YSIG RF+M FEGEE  +QR  GT+VG E+ D  RWP S+WR LKV+W
Sbjct:   316 PFDQYMESVKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEESDPTRWPKSKWRSLKVRW 375

Query:   361 DATTDSITRPARVSPWNIEPIERTHKRPASVQHQQKRLRPNDA-SSPWFSSLFSNG 415
             D T+ SI RP RVSPW +EP             + KR R N A SSP  S L   G
Sbjct:   376 DETS-SIPRPDRVSPWKVEPALAPPALSPVPMPRPKRPRSNIAPSSPDSSMLTREG 430
GO:0003677 "DNA binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0009725 "response to hormone stimulus" evidence=IEA
GO:0046983 "protein dimerization activity" evidence=IEA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP;TAS
GO:0009911 "positive regulation of flower development" evidence=IMP
GO:0010047 "fruit dehiscence" evidence=IMP
GO:0010150 "leaf senescence" evidence=IMP
GO:0010227 "floral organ abscission" evidence=IMP
GO:0008285 "negative regulation of cell proliferation" evidence=IMP
GO:0048481 "ovule development" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0009737 "response to abscisic acid stimulus" evidence=IMP
GO:0043565 "sequence-specific DNA binding" evidence=IDA
GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA
TAIR|locus:2025991 ARF1 "auxin response factor 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2138096 ARF9 "auxin response factor 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039124 ARF11 "auxin response factor 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076765 ARF18 "auxin response factor 18" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026145 ARF12 "auxin response factor 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2014731 ARF14 "auxin response factor 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175098 ARF4 "auxin response factor 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009298 ARF21 "auxin response factor 21" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036288 ARF22 "auxin response factor 22" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8L7G0ARFA_ARATHNo assigned EC number0.41830.86730.9338yesno
Q5JK20ARFD_ORYSJNo assigned EC number0.42530.91200.8081yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query716
pfam0650783 pfam06507, Auxin_resp, Auxin response factor 9e-32
pfam0236297 pfam02362, B3, B3 DNA binding domain 4e-30
smart0101996 smart01019, B3, B3 DNA binding domain 4e-28
cd1001798 cd10017, B3_DNA, Plant-specific B3-DNA binding dom 3e-23
pfam02309188 pfam02309, AUX_IAA, AUX/IAA family 6e-23
>gnl|CDD|191545 pfam06507, Auxin_resp, Auxin response factor Back     alignment and domain information 
 Score =  118 bits (297), Expect = 9e-32
 Identities = 38/83 (45%), Positives = 60/83 (72%)

Query: 275 AFHAISTGTRFTVYYHPWTRPAEFLVPFSQYMKSAEIDYSIGTRFRMVFEGEECADQRIA 334
           A HA STG+ F V+Y+P    +EF+VP+++Y+K+    +S+G RF+M FE E+ +++R +
Sbjct: 1   AAHAASTGSPFHVFYNPRASTSEFVVPYAKYLKAMNNPFSVGMRFKMRFETEDSSERRFS 60

Query: 335 GTVVGTEDVDHIRWPASEWRCLK 357
           GT+ G  D+D IRWP S+WR L+
Sbjct: 61  GTISGVSDLDPIRWPNSKWRSLQ 83

A conserved region of auxin-responsive transcription factors. Length = 83
>gnl|CDD|216995 pfam02362, B3, B3 DNA binding domain Back     alignment and domain information
>gnl|CDD|214977 smart01019, B3, B3 DNA binding domain Back     alignment and domain information
>gnl|CDD|197383 cd10017, B3_DNA, Plant-specific B3-DNA binding domain Back     alignment and domain information
>gnl|CDD|216968 pfam02309, AUX_IAA, AUX/IAA family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 716
PF02309215 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The A 100.0
PF0650783 Auxin_resp: Auxin response factor; InterPro: IPR01 100.0
PF02362100 B3: B3 DNA binding domain; InterPro: IPR003340 Two 99.68
KOG06441113 consensus Uncharacterized conserved protein, conta 99.59
PF09217156 EcoRII-N: Restriction endonuclease EcoRII, N-termi 98.0
PF03754114 DUF313: Domain of unknown function (DUF313) ; Inte 97.53
PF0056484 PB1: PB1 domain; InterPro: IPR000270 The Phox and 96.84
smart0066681 PB1 PB1 domain. Phox and Bem1p domain, present in 96.38
cd0599281 PB1 The PB1 domain is a modular domain mediating s 96.21
cd0639891 PB1_Joka2 The PB1 domain is present in the Nicotia 96.19
cd0640782 PB1_NLP A PB1 domain is present in NIN like protei 96.02
cd0639681 PB1_NBR1 The PB1 domain is an essential part of NB 95.87
cd0640380 PB1_Par6 The PB1 domain is an essential part of Pa 95.74
cd0640986 PB1_MUG70 The MUG70 protein is a product of the me 94.21
cd0640483 PB1_aPKC PB1 domain is an essential modular domain 93.08
cd0640886 PB1_NoxR The PB1 domain is present in the Epichloe 92.44
cd0640181 PB1_TFG The PB1 domain found in TFG protein, an on 91.94
cd0639782 PB1_UP1 Uncharacterized protein 1. The PB1 domain 90.78
cd0640287 PB1_p62 The PB1 domain is an essential part of p62 90.72
>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression [] Back     alignment and domain information 
Probab=100.00  E-value=2.1e-36  Score=304.95  Aligned_cols=96  Identities=41%  Similarity=0.694  Sum_probs=0.0

Q ss_pred             CCCcceEEEEEcCceeeeeecCCCCCChHHHHHHHHhhh---ccC----------CCcC-CCCCCcEEEEecCCCCeEEc
Q 005060          614 YVSRSCTKVIKFGTALGRSVDLTRFHGYDELISELDQMF---DFN----------GSLI-DGNSGFHIAYMDDEGDMMLV  679 (716)
Q Consensus       614 ~~~~~~vKV~meG~~vGR~vDLs~~~sY~eL~~~L~~MF---~~~----------g~l~-~~~~~~~v~Y~D~eGD~mlv  679 (716)
                      +..+.||||+|||++|||||||++|+||++|+.+|++||   +|.          +.+. ..+++|+|||+|+|||||||
T Consensus       106 ~~~~~~vKV~mdG~~igRkVDL~~~~sY~~L~~~L~~MF~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~Y~D~egd~mlv  185 (215)
T PF02309_consen  106 SSSRSYVKVNMDGVPIGRKVDLSAYSSYEELSSALEKMFSCFSIEQCGSHGLNESGLLDLLNGSEYVLVYEDKEGDWMLV  185 (215)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCCceeEEEecCcccceecCHHHhhCHHHHHHHHHHhcCCCCccccccccccchhhccccCCcceeEEEECCCCCEEEe
Confidence            346899999999999999999999999999999999999   665          2221 14679999999999999999


Q ss_pred             cCCChHHHHhcceeeEEecCCccCCcCCCC
Q 005060          680 GDNPWQDFQCAVRRMFICPKEDIDGVIPSS  709 (716)
Q Consensus       680 GD~PW~~F~~~vkri~I~~~~e~~~m~~~~  709 (716)
                      |||||++||++||||+||+.+|+++|+|++
T Consensus       186 GD~PW~~F~~~vkRl~I~~~~e~~~~~~r~  215 (215)
T PF02309_consen  186 GDVPWEEFVKSVKRLRIMKSSEAKGLAPRA  215 (215)
T ss_dssp             ------------------------------
T ss_pred             cCCCHHHHHHHhhccEEecHHHhcccCCCC
Confidence            999999999999999999999999999874

The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.
>PF06507 Auxin_resp: Auxin response factor; InterPro: IPR010525 This pattern represents a conserved region of auxin-responsive transcription factors Back     alignment and domain information
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species Back     alignment and domain information
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] Back     alignment and domain information
>PF09217 EcoRII-N: Restriction endonuclease EcoRII, N-terminal; InterPro: IPR023372 There are four classes of restriction endonucleases: types I, II,III and IV Back     alignment and domain information
>PF03754 DUF313: Domain of unknown function (DUF313) ; InterPro: IPR005508 This is a family of proteins from Arabidopsis thaliana (Mouse-ear cress) with uncharacterised function Back     alignment and domain information
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins Back     alignment and domain information
>smart00666 PB1 PB1 domain Back     alignment and domain information
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity Back     alignment and domain information
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein Back     alignment and domain information
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium) Back     alignment and domain information
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62 Back     alignment and domain information
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells Back     alignment and domain information
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain Back     alignment and domain information
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells Back     alignment and domain information
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA Back     alignment and domain information
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK Back     alignment and domain information
>cd06397 PB1_UP1 Uncharacterized protein 1 Back     alignment and domain information
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query716
1wid_A130 Solution Structure Of The B3 Dna-Binding Domain Of 4e-11
>pdb|1WID|A Chain A, Solution Structure Of The B3 Dna-Binding Domain Of Rav1 Length = 130 Back     alignment and structure 
Iteration: 1

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/102 (40%), Positives = 56/102 (54%), Gaps = 6/102 (5%)
Query: 149 FSKKLTPSDTSTHGGFSVPKRHADEC--LPPLDMSKDPPLQELVAKDLHGLEWRFRHIYR 206
           F K +TPSD        +PK HA++   LP  ++S    L  L  +D++G  WRFR+ Y 
Sbjct: 14  FEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVL--LNFEDVNGKVWRFRYSYW 71
Query: 207 GQPKRHLLTSGWSVFVTSKKLVAGDVCIFLR--GGDGELRVG 246
              + ++LT GWS FV  K L AGDV  F R  G D +L +G
Sbjct: 72  NSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIG 113

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query716
1wid_A130 DNA-binding protein RAV1; DNA-binding domain, stru 4e-41
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Length = 130 Back     alignment and structure
 Score =  145 bits (367), Expect = 4e-41
 Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 1/130 (0%)

Query: 135 GNSPPLPPKLNVCSFSKKLTPSDTSTHGGFSVPKRHADECLPPLDMSKDPPLQELVAKDL 194
           G+S     +     F K +TPSD        +PK HA++  P    +       L  +D+
Sbjct: 1   GSSGS-SGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDV 59

Query: 195 HGLEWRFRHIYRGQPKRHLLTSGWSVFVTSKKLVAGDVCIFLRGGDGELRVGVRRAMKLQ 254
           +G  WRFR+ Y    + ++LT GWS FV  K L AGDV  F R    + ++ +    +  
Sbjct: 60  NGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSG 119

Query: 255 NNASTSVISS 264
           ++   S  SS
Sbjct: 120 SDLDASGPSS 129
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query716
1wid_A130 DNA-binding protein RAV1; DNA-binding domain, stru 99.95
4i1k_A146 B3 domain-containing transcription factor VRN1; B3 99.7
1yel_A104 AT1G16640; CESG, protein structure initiative, str 99.49
1wmh_B86 Partitioning defective-6 homolog alpha; kinase, PB 95.57
1vd2_A89 Protein kinase C, IOTA type; PB1 domain, OPCA moti 94.37
1na6_A404 Ecorii, restriction endonuclease ecorii; site-spec 93.22
1q1o_A98 Cell division control protein 24; PB1 domain, PCCR 91.64
2kkc_A102 Sequestosome-1; P62, PB1, autophagy, ubiquitin-pro 89.23
2ktr_A117 Sequestosome-1; autophagy, NF-KB signaling, HOMO-o 88.39
1oey_A83 P67-PHOX, neutrophil cytosol factor 2; immune syst 87.4
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Back     alignment and structure
Probab=99.95  E-value=1.2e-28  Score=230.01  Aligned_cols=115  Identities=31%  Similarity=0.472  Sum_probs=104.7

Q ss_pred             CCCCceeeEEEEeccccCCCCCceeeccccccccCCCCCCCCCCCceEEEEEeCCCCEEEEEEEEeCCCCceeeccccch
Q 005060          141 PPKLNVCSFSKKLTPSDTSTHGGFSVPKRHADECLPPLDMSKDPPLQELVAKDLHGLEWRFRHIYRGQPKRHLLTSGWSV  220 (716)
Q Consensus       141 ~~~~~~~~F~K~LT~SDv~~~grfsVPk~~Ae~~FP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~~yrg~prr~~LTtGWs~  220 (716)
                      ..++..++|+|+||+|||+++++|+||+++|+.|||.++..+..+.++|.++|.+|++|+|+|+||+++++|+|++||+.
T Consensus         6 ~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~   85 (130)
T 1wid_A            6 SGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSR   85 (130)
T ss_dssp             --CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHH
T ss_pred             CCCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHH
Confidence            45667789999999999999999999999999999999987666789999999999999999999999999999999999


Q ss_pred             heecCCCCCCCEEEEEEcCC--CcEEEEEEEeccccC
Q 005060          221 FVTSKKLVAGDVCIFLRGGD--GELRVGVRRAMKLQN  255 (716)
Q Consensus       221 FV~~K~L~aGD~VvF~R~~~--G~l~vGIRRa~~~~~  255 (716)
                      ||++|+|++||+|+|++.++  +.|+|++||+.+...
T Consensus        86 FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~~  122 (130)
T 1wid_A           86 FVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSDL  122 (130)
T ss_dssp             HHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCSS
T ss_pred             HHHHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCCc
Confidence            99999999999999999864  569999999986553
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana} Back     alignment and structure
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Back     alignment and structure
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2 Back     alignment and structure
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A Back     alignment and structure
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A Back     alignment and structure
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B Back     alignment and structure
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B Back     alignment and structure
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus} Back     alignment and structure
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 716
d1wida_117 b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cre 9e-37
d1na6a1175 b.142.1.1 (A:4-178) Restriction endonuclease EcoRI 4e-23
d1yela1102 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabid 7e-17
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 117 Back     information, alignment and structure

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  131 bits (331), Expect = 9e-37
 Identities = 38/104 (36%), Positives = 53/104 (50%), Gaps = 2/104 (1%)

Query: 149 FSKKLTPSDTSTHGGFSVPKRHADECLPPLDMSKDPPLQELVAKDLHGLEWRFRHIYRGQ 208
           F K +TPSD        +PK HA++  P    +       L  +D++G  WRFR+ Y   
Sbjct: 7   FEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNS 66

Query: 209 PKRHLLTSGWSVFVTSKKLVAGDVCIFLR--GGDGELRVGVRRA 250
            + ++LT GWS FV  K L AGDV  F R  G D +L +G +  
Sbjct: 67  SQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSR 110
>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 175 Back     information, alignment and structure
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 102 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query716
d1wida_117 DNA-binding protein RAV1 {Thale cress (Arabidopsis 99.93
d1na6a1175 Restriction endonuclease EcoRII, N-terminal domain 99.78
d1yela1102 At1g16640 {Thale cress (Arabidopsis thaliana) [Tax 99.4
d2bkfa185 Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum 95.82
d1ip9a_85 Bud emergence mediator Bemp1 {Baker's yeast (Sacch 95.0
d1wmhb_82 Partitioning defective-6 homolog alpha, PAR-6 alph 85.85
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=1.4e-26  Score=209.07  Aligned_cols=108  Identities=34%  Similarity=0.527  Sum_probs=101.2

Q ss_pred             ceeeEEEEeccccCCCCCceeeccccccccCCCCCCCCCCCceEEEEEeCCCCEEEEEEEEeCCCCceeeccccchheec
Q 005060          145 NVCSFSKKLTPSDTSTHGGFSVPKRHADECLPPLDMSKDPPLQELVAKDLHGLEWRFRHIYRGQPKRHLLTSGWSVFVTS  224 (716)
Q Consensus       145 ~~~~F~K~LT~SDv~~~grfsVPk~~Ae~~FP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~~yrg~prr~~LTtGWs~FV~~  224 (716)
                      ...+|.|+||+|||++++||+||+++|++|||+++.....+++.|.+.|.+|++|.|+|+||++.++|+|++||..||++
T Consensus         3 ~~~iF~K~Lt~sDv~~~~rL~iP~~~~~~~lp~~~~~~~~~~~~~~~~d~~g~~W~~~~~~~~~~~~~~l~~GW~~Fv~~   82 (117)
T d1wida_           3 AEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKE   82 (117)
T ss_dssp             CEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHHHHH
T ss_pred             CceEEEEEecchhcCCCCEEEECHHHHHHhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEecCHHHHHHH
Confidence            35799999999999999999999999999999999988888999999999999999999999888899999999999999


Q ss_pred             CCCCCCCEEEEEEc--CCCcEEEEEEEecc
Q 005060          225 KKLVAGDVCIFLRG--GDGELRVGVRRAMK  252 (716)
Q Consensus       225 K~L~aGD~VvF~R~--~~G~l~vGIRRa~~  252 (716)
                      ++|++||+|+|++.  ++++++|++||+..
T Consensus        83 ~~Lk~GD~~~F~~~~~~~~~~~i~~r~~~~  112 (117)
T d1wida_          83 KNLRAGDVVSFSRSNGQDQQLYIGWKSRSG  112 (117)
T ss_dssp             TTCCTTCEEEEEECCSSSCCEEEEEECCCS
T ss_pred             cCCCCCCEEEEEEEeCCCCEEEEEEEECCC
Confidence            99999999999997  56789999998753
>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wmhb_ d.15.2.2 (B:) Partitioning defective-6 homolog alpha, PAR-6 alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure