Citrus Sinensis ID: 005076
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 715 | ||||||
| 224061803 | 737 | predicted protein [Populus trichocarpa] | 0.979 | 0.949 | 0.582 | 0.0 | |
| 255539396 | 742 | conserved hypothetical protein [Ricinus | 0.998 | 0.962 | 0.591 | 0.0 | |
| 225457725 | 753 | PREDICTED: uncharacterized protein LOC10 | 0.980 | 0.930 | 0.571 | 0.0 | |
| 297745641 | 752 | unnamed protein product [Vitis vinifera] | 0.903 | 0.859 | 0.609 | 0.0 | |
| 358343883 | 779 | Photosystem II CP47 chlorophyll apoprote | 0.977 | 0.897 | 0.500 | 1e-163 | |
| 15238694 | 736 | uncharacterized protein [Arabidopsis tha | 0.953 | 0.926 | 0.499 | 1e-161 | |
| 297812709 | 724 | hypothetical protein ARALYDRAFT_489361 [ | 0.965 | 0.953 | 0.503 | 1e-159 | |
| 147794804 | 717 | hypothetical protein VITISV_028558 [Viti | 0.734 | 0.732 | 0.508 | 1e-137 | |
| 293333886 | 775 | uncharacterized protein LOC100383143 [Ze | 0.965 | 0.890 | 0.415 | 1e-121 | |
| 125562175 | 790 | hypothetical protein OsI_29875 [Oryza sa | 0.763 | 0.691 | 0.488 | 1e-117 |
| >gi|224061803|ref|XP_002300606.1| predicted protein [Populus trichocarpa] gi|222842332|gb|EEE79879.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 751 bits (1940), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/748 (58%), Positives = 549/748 (73%), Gaps = 48/748 (6%)
Query: 2 EDDEMNSLFEGMVLFTPSQLAAEQSLEEDDV--PKANPNPNKSESPAKSNDIDTCIEAAV 59
E+D M+SLFEGMVLFTP Q EQ L V P +P ++S+ +N +T EA
Sbjct: 3 EEDGMDSLFEGMVLFTPHQFTDEQ-LHRQPVEDPLKHPEESQSDDTVNNNSNNTLAEAGA 61
Query: 60 S------------SEPLEENLFSDL-TLQ------------LQTQPQSSPSITYTKTKSS 94
SEPL+ENLFS TL + P + P+ T+ S+
Sbjct: 62 GAGAEEASHHQQLSEPLDENLFSSFQTLTQSQSQSQSQSDPISPSPTTDPT---TQISST 118
Query: 95 RKKKRAAGLRIGYGRDTTPHSSSAPDDDDAGDDDDVTCTIDEADVDAEASSKNSYSSISV 154
+KKR A RIGY RD T PD ++ DDD +AD + + +S++ S ++
Sbjct: 119 SRKKRRASFRIGYARDRT----YPPDLNNHNDDDG-----HDADKNEDDASQSPSSIVAN 169
Query: 155 PVVVN----EINN--NDPHQRFEYLRSVISDKLNRARELAASVSAARKDSIRRRRKAADD 208
P+ + + N ++ +F++L+S IS+KL+ AR L ASVS+ARKDSI RRRKAA+D
Sbjct: 170 PIDTSLSDSQFKNKKDETLSQFDHLKSQISEKLDAARLLIASVSSARKDSISRRRKAAED 229
Query: 209 VELASLRHSQLEKQLDEACEAEDFEAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDS 268
+ LAS H+ LE QL+ ACEAEDFE A+RISD LAAAE +Q+LL+AL+DAEAHCD IDS
Sbjct: 230 LNLASANHAHLEHQLEVACEAEDFETAERISDSLAAAEKEKQTLLLALKDAEAHCDTIDS 289
Query: 269 KMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSEEMEKWLASTEALEGRK 328
KMY L SQIAAEQ+CASLL HF+ DA N+AD LK A+ LSS+E++ W +S++ LE +K
Sbjct: 290 KMYHALDSQIAAEQECASLLQHFAKDAENNADLVLKNAQILSSKEIDDWFSSSQVLEAKK 349
Query: 329 IELEIESHLVNEARAVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEI 388
IEL+IESH +NEAR+ +++SI+HSVEDD EKEIL KKKD+LT EL LL LV+ KE EI
Sbjct: 350 IELDIESHFINEARSRVSDSIQHSVEDDRNEKEILCKKKDVLTKELDHLLDLVKQKEMEI 409
Query: 389 AENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFL 448
END+ I+AV+ERI++VVSDF+E QSSINAK+D LQS +SQ++L+SEA+S K+KEID+FL
Sbjct: 410 DENDTRIKAVDERIAVVVSDFKEIQSSINAKFDDLQSRLSQMHLQSEALSTKRKEIDRFL 469
Query: 449 NDEVDRGTKLKELARVSADEAKEYWEVVELRRSLMSSILKSREDKVKLAKTEEKLSAEVQ 508
+E +RG KL+EL RVS DEAK Y EVV LR+SL SSILKSRE+K++LAKTEE+L+ +VQ
Sbjct: 470 TEEEERGAKLRELVRVSKDEAKVYQEVVVLRKSLKSSILKSREEKLRLAKTEEELTLDVQ 529
Query: 509 TLQQEASAARASLQELSSTKSNIQQNIASFKQRIFFIDKRVPDLEAEKKVAAAARNFKEA 568
LQQE SAAR SLQELSSTKS+IQQNI+S KQR FIDKRVP+LEAEKKVAAA RNFKEA
Sbjct: 530 MLQQEVSAARGSLQELSSTKSSIQQNISSLKQRSLFIDKRVPELEAEKKVAAAVRNFKEA 589
Query: 569 ARLAAEAKSLSVEKDGLQQEMEKAVLELEKLEENIEDTINRLQEIEGLISSKEKEVAMAR 628
AR+AAEAKSL VEKD L+ ++KA EL+KLEE+I+DT++RLQ EGLI SKEKEVAMAR
Sbjct: 590 ARIAAEAKSLGVEKDSLEIGLQKATSELKKLEEDIKDTVDRLQTTEGLILSKEKEVAMAR 649
Query: 629 FQRLRIVAGAATAERSAALELGDLEEANLLLAEAEAAGQEAKKLEEA-NLKEEEFTNLPE 687
FQRL +++GAATAER AALE GD +EANLLLAEAEAA EAKKL+ N KEEEF +P+
Sbjct: 650 FQRLLLISGAATAERFAALERGDTKEANLLLAEAEAANDEAKKLQPTYNFKEEEFL-IPK 708
Query: 688 HFISMELVTNFGRKQLAELVAAIHLSAA 715
FI +ELV+N GRKQLAEL A+ H A+
Sbjct: 709 QFIPVELVSNLGRKQLAELAASAHFPAS 736
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255539396|ref|XP_002510763.1| conserved hypothetical protein [Ricinus communis] gi|223551464|gb|EEF52950.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|225457725|ref|XP_002274237.1| PREDICTED: uncharacterized protein LOC100246165 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|297745641|emb|CBI40806.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|358343883|ref|XP_003636025.1| Photosystem II CP47 chlorophyll apoprotein [Medicago truncatula] gi|355501960|gb|AES83163.1| Photosystem II CP47 chlorophyll apoprotein [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|15238694|ref|NP_197889.1| uncharacterized protein [Arabidopsis thaliana] gi|20466600|gb|AAM20617.1| putative protein [Arabidopsis thaliana] gi|22136436|gb|AAM91296.1| putative protein [Arabidopsis thaliana] gi|332006013|gb|AED93396.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297812709|ref|XP_002874238.1| hypothetical protein ARALYDRAFT_489361 [Arabidopsis lyrata subsp. lyrata] gi|297320075|gb|EFH50497.1| hypothetical protein ARALYDRAFT_489361 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|147794804|emb|CAN62587.1| hypothetical protein VITISV_028558 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|293333886|ref|NP_001169280.1| uncharacterized protein LOC100383143 [Zea mays] gi|224028347|gb|ACN33249.1| unknown [Zea mays] gi|413921554|gb|AFW61486.1| hypothetical protein ZEAMMB73_345573 [Zea mays] | Back alignment and taxonomy information |
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| >gi|125562175|gb|EAZ07623.1| hypothetical protein OsI_29875 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 715 | ||||||
| TAIR|locus:2179305 | 736 | AT5G25070 "AT5G25070" [Arabido | 0.756 | 0.735 | 0.478 | 1.2e-132 | |
| ZFIN|ZDB-GENE-030131-8984 | 4762 | pleca "plectin a" [Danio rerio | 0.622 | 0.093 | 0.215 | 3.2e-11 | |
| ZFIN|ZDB-GENE-100917-2 | 4530 | plecb "plectin b" [Danio rerio | 0.615 | 0.097 | 0.216 | 5.1e-11 | |
| UNIPROTKB|P35580 | 1976 | MYH10 "Myosin-10" [Homo sapien | 0.506 | 0.183 | 0.230 | 5.1e-10 | |
| UNIPROTKB|F8W6L6 | 1992 | MYH10 "Myosin-10" [Homo sapien | 0.506 | 0.181 | 0.230 | 5.2e-10 | |
| MGI|MGI:1930780 | 1976 | Myh10 "myosin, heavy polypepti | 0.506 | 0.183 | 0.227 | 1.1e-09 | |
| RGD|71000 | 1976 | Myh10 "myosin, heavy chain 10, | 0.506 | 0.183 | 0.227 | 2.3e-09 | |
| UNIPROTKB|G3V9Y1 | 1976 | Myh10 "Myosin-10" [Rattus norv | 0.506 | 0.183 | 0.227 | 2.3e-09 | |
| UNIPROTKB|F1LMQ5 | 2009 | Myh10 "Myosin-10" [Rattus norv | 0.506 | 0.180 | 0.227 | 2.3e-09 | |
| UNIPROTKB|F1LQ02 | 2013 | Myh10 "Myosin-10" [Rattus norv | 0.506 | 0.179 | 0.227 | 2.3e-09 |
| TAIR|locus:2179305 AT5G25070 "AT5G25070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1186 (422.6 bits), Expect = 1.2e-132, Sum P(3) = 1.2e-132
Identities = 261/546 (47%), Positives = 358/546 (65%)
Query: 102 GLRIGYGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDAEASSK---NSYSSISVPVVV 158
GLRIGYGR +++ ++ + S+ PVV
Sbjct: 120 GLRIGYGRHETNNLDEDEDDAVSQQSDSVSQVSDSVSQISDSVAQVFDSGNQSLDSPVVT 179
Query: 159 NEINNNDPHQRFEYLRSVISDKLNRARELAASVSAARKDSIRRRRKAADDVELASLRHSQ 218
+ N R E +++ I KLNR+R+LAASV++ARK++IR++R+A++++ LAS H +
Sbjct: 180 VVVGNGS--SRLELVKAQIEAKLNRSRDLAASVTSARKNAIRKKRQASENLRLASTTHEE 237
Query: 219 LEKQLXXXXXXXXXXXXQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQI 278
LEKQL +RIS+ LAA E + +LL LR AE+ CDAI+SKM +VL+SQI
Sbjct: 238 LEKQLEEAIETEDFDAAERISESLAAKERDRLALLALLRQAESDCDAIESKMEEVLLSQI 297
Query: 279 AAEQDCASLLDHFSADASNSADTFLKKAESLSSEEMEKWLASTEALEGRKIELEIESHLV 338
AAE++ A LL F DA N A + L+KAE+ S+EMEKW + +E +E RK+EL+IES +V
Sbjct: 298 AAEEESACLLRSFGTDAENDAGSILEKAEAFYSDEMEKWHSCSEDVEVRKVELDIESVVV 357
Query: 339 NEARAVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAV 398
+ R LN +E SVE D++EKEIL KKK+ L NEL++LLALV+ KEKEI ENDS I AV
Sbjct: 358 DNVRLSLNGILEGSVEQDMKEKEILQKKKEHLANELEELLALVKAKEKEIDENDSQIEAV 417
Query: 399 EERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKL 458
EERI+ VV+ F+E Q+S++ + +Q+ +++++ E+E +S KKK++D+F+ E +RG KL
Sbjct: 418 EERINNVVTGFKELQTSMDKMLNDVQAGLTEVDKETEDLSRKKKDVDEFMTSEKERGAKL 477
Query: 459 KELARVSADEAKEYWEVVELRRSLMSSILKSREDKVKLAKTEEKLSAEVQTLQQEASAAR 518
++LARVSADEA EY EV++LR+ LMS + K+RE++ KL EEKLS EVQ LQ+E S+ R
Sbjct: 478 RDLARVSADEACEYEEVIKLRKGLMSYVSKTREERAKLVNIEEKLSEEVQKLQEEVSSTR 537
Query: 519 ASLQELSSTKSNIQQNIASFKQRIFFIDKRVPDLEAEKKVXXXXXXXXXXXXXXXEAKSL 578
L+E SS KS IQQNI SF +I FI+KR+P+LEAEKKV EAKSL
Sbjct: 538 ELLKERSSKKSIIQQNITSFMDKIMFIEKRMPELEAEKKVAASTRNFKEAGRIAAEAKSL 597
Query: 579 SVEKDGLQQXXXXXXXXXXXXXXNIEDTINRLQEIEGLISSKEKEVAMARFQRLRIVAGA 638
++EKD Q IE+TI RLQEIE LI SKEKE+A++RFQRLRI +G
Sbjct: 598 NLEKDKTQMETGKANAELEKAEHEIEETIKRLQEIEKLILSKEKELAISRFQRLRIDSGT 657
Query: 639 ATAERS 644
A AERS
Sbjct: 658 AKAERS 663
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| ZFIN|ZDB-GENE-030131-8984 pleca "plectin a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-100917-2 plecb "plectin b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P35580 MYH10 "Myosin-10" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F8W6L6 MYH10 "Myosin-10" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| MGI|MGI:1930780 Myh10 "myosin, heavy polypeptide 10, non-muscle" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| RGD|71000 Myh10 "myosin, heavy chain 10, non-muscle" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|G3V9Y1 Myh10 "Myosin-10" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1LMQ5 Myh10 "Myosin-10" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1LQ02 Myh10 "Myosin-10" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 715 | |||
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-09 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 1e-08 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 5e-08 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-07 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 1e-06 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 3e-06 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 4e-06 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 4e-06 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 9e-06 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 5e-05 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 7e-05 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-04 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 3e-04 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 4e-04 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 4e-04 | |
| COG1269 | 660 | COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su | 7e-04 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 9e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 0.001 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 0.002 | |
| PRK12704 | 520 | PRK12704, PRK12704, phosphodiesterase; Provisional | 0.002 |
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
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Score = 60.5 bits (147), Expect = 2e-09
Identities = 55/285 (19%), Positives = 121/285 (42%), Gaps = 19/285 (6%)
Query: 351 HSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSD-- 408
E R+KE + ++ L EL+KL + + EK + E + + + ++I + +
Sbjct: 230 KEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQ 289
Query: 409 --FQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLKELARVSA 466
+E + A+ SL+ I++ E E + +++ + D++ +++EL R
Sbjct: 290 LRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEI-DKLLA--EIEELEREIE 346
Query: 467 DEAKEYWEVVELRRSLMSSILKSREDKVKLAKTEEKLSAEVQTLQQEASAARASLQELSS 526
+E K R L + +E+ L E++ E + E R L++L
Sbjct: 347 EERKR-------RDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKR 399
Query: 527 TKSNIQQNIASFKQRIFFIDKRVPDLEAEKKVAAAARNFKEAARLAAEAKSLSVEKDGLQ 586
+ +++ + ++ + + + + DL A A N L E + ++E +
Sbjct: 400 EINELKRELDRLQEELQRLSEELADLNAAIAGIEAKIN-----ELEEEKEDKALEIKKQE 454
Query: 587 QEMEKAVLELEKLEENIEDTINRLQEIEGLISSKEKEVAMARFQR 631
++E+ +L K E+ + D +E +S ++E+A A Q
Sbjct: 455 WKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQA 499
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SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
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| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
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| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
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| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
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| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
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| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
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| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
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| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
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| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
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| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
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| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
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| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
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| >gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion] | Back alignment and domain information |
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| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
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| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
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| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
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| >gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional | Back alignment and domain information |
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Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 715 | |||
| PRK02224 | 880 | chromosome segregation protein; Provisional | 98.43 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 97.86 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 97.64 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 97.64 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 97.49 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 97.37 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 97.32 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 96.93 | |
| PRK11637 | 428 | AmiB activator; Provisional | 96.85 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 96.64 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 96.45 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 96.06 | |
| PRK11637 | 428 | AmiB activator; Provisional | 95.62 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 95.57 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 95.54 | |
| KOG0161 | 1930 | consensus Myosin class II heavy chain [Cytoskeleto | 95.32 | |
| PF05701 | 522 | WEMBL: Weak chloroplast movement under blue light; | 94.98 | |
| KOG1924 | 1102 | consensus RhoA GTPase effector DIA/Diaphanous [Sig | 94.75 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 94.43 | |
| PRK04778 | 569 | septation ring formation regulator EzrA; Provision | 94.21 | |
| PF02151 | 36 | UVR: UvrB/uvrC motif; InterPro: IPR001943 During t | 93.86 | |
| PF00261 | 237 | Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop | 93.48 | |
| KOG0250 | 1074 | consensus DNA repair protein RAD18 (SMC family pro | 93.41 | |
| PF00038 | 312 | Filament: Intermediate filament protein; InterPro: | 93.2 | |
| KOG1924 | 1102 | consensus RhoA GTPase effector DIA/Diaphanous [Sig | 93.02 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 92.88 | |
| PF00261 | 237 | Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop | 90.98 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 89.07 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 88.65 | |
| PF00038 | 312 | Filament: Intermediate filament protein; InterPro: | 87.31 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 87.27 | |
| PF08317 | 325 | Spc7: Spc7 kinetochore protein; InterPro: IPR01325 | 87.14 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 86.92 | |
| PF06160 | 560 | EzrA: Septation ring formation regulator, EzrA ; I | 86.78 | |
| COG4942 | 420 | Membrane-bound metallopeptidase [Cell division and | 86.42 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 85.99 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 85.85 | |
| PF05701 | 522 | WEMBL: Weak chloroplast movement under blue light; | 85.6 | |
| KOG0612 | 1317 | consensus Rho-associated, coiled-coil containing p | 85.39 | |
| KOG0977 | 546 | consensus Nuclear envelope protein lamin, intermed | 84.85 | |
| PRK09039 | 343 | hypothetical protein; Validated | 84.3 | |
| smart00787 | 312 | Spc7 Spc7 kinetochore protein. This domain is foun | 83.59 | |
| PF04949 | 159 | Transcrip_act: Transcriptional activator; InterPro | 83.43 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 81.66 |
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.007 Score=68.36 Aligned_cols=204 Identities=17% Similarity=0.197 Sum_probs=112.7
Q ss_pred hHHHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHHhhhhhhhHHHHHHHhhhhcH
Q 005076 232 FEAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSS 311 (715)
Q Consensus 232 Fe~AeriSdsLAa~EKek~~ll~aLrdAe~~~D~vD~kmq~vL~s~IaaEEE~A~LL~~FakdA~~~A~~~~k~A~~lss 311 (715)
+...+..-+.+..++++...+-.-+..++..+..+..++...-...-..+.+.-.|......-+. ......++-..+.
T Consensus 243 ~~el~~~~~~l~~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~~~-~~~~l~~~~~~l~- 320 (880)
T PRK02224 243 LEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDA-DAEAVEARREELE- 320 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHH-
Confidence 33334444556666777777777777777777777777766554444444333333332221111 1111111112221
Q ss_pred HHHHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhhhhhhhHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhhh
Q 005076 312 EEMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAEN 391 (715)
Q Consensus 312 kEme~W~ss~E~LE~KK~EleiEs~~v~eAr~~Ln~sIEhsVEdDkrEKeiL~KkkdvL~~ELe~LL~lVr~KE~EIAeN 391 (715)
+.++.+..-...+..+=.++.-+. ..+...+..=.++..-+..+-..+++++..+-..+...+.+|...
T Consensus 321 ~k~~el~~~l~~~~~~l~~~~~~~-----------e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l 389 (880)
T PRK02224 321 DRDEELRDRLEECRVAAQAHNEEA-----------ESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEEL 389 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222211111000000000 111111222222223344556678888888888888888888888
Q ss_pred cchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhhHHhhhhhHHHhHhhhhhh
Q 005076 392 DSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEV 452 (715)
Q Consensus 392 d~~I~aV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~~letEaL~~KkkeID~fl~~ee 452 (715)
...+..+..+|..+...|. .++.++..++..+.++...-..+....+...++|...+
T Consensus 390 ~~el~el~~~l~~~~~~~~----~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 446 (880)
T PRK02224 390 EEEIEELRERFGDAPVDLG----NAEDFLEELREERDELREREAELEATLRTARERVEEAE 446 (880)
T ss_pred HHHHHHHHHHHhcchhhhh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888877665443 45677888888888888888888888888888877766
|
|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function | Back alignment and domain information |
|---|
| >KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >PRK04778 septation ring formation regulator EzrA; Provisional | Back alignment and domain information |
|---|
| >PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products [] | Back alignment and domain information |
|---|
| >PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope | Back alignment and domain information |
|---|
| >KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope | Back alignment and domain information |
|---|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] | Back alignment and domain information |
|---|
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
| >PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site | Back alignment and domain information |
|---|
| >COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function | Back alignment and domain information |
|---|
| >KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] | Back alignment and domain information |
|---|
| >PRK09039 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >smart00787 Spc7 Spc7 kinetochore protein | Back alignment and domain information |
|---|
| >PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae [] | Back alignment and domain information |
|---|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 74.5 bits (183), Expect = 8e-14
Identities = 45/314 (14%), Positives = 128/314 (40%), Gaps = 8/314 (2%)
Query: 312 EEMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEH---SVEDDLREKEILYKKKD 368
EE+++ + E ELE + + E + +L ++ + + L KK
Sbjct: 864 EELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQ 923
Query: 369 ILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIIS 428
L L ++ A + ++E+ + + + +++++ + +E +++ +
Sbjct: 924 ELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADG 983
Query: 429 QLNLESEAMSMKKKEIDKFLNDEVDRGTKLKELARVSADEAKEYWEVVELRRSLMSSILK 488
++ + + + + + +K + ++ +L A+E ++ + +L+ S I +
Sbjct: 984 KIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISE 1043
Query: 489 SREDKVKLAKTEEKLSAEVQTLQQEASAARASLQELSSTKSNIQQNIASFKQRIFFIDKR 548
K K+ ++L + L+ E+S + EL + + ++ +A ++ + R
Sbjct: 1044 LEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALAR 1103
Query: 549 VPDLEAEKKVAAAARNFKEAARLAAEAKSLSVEKDGLQQEMEKAVLELEKLEENIEDTIN 608
+ D ++K A K+ L + L + + + KA + L E +E
Sbjct: 1104 LEDETSQKNNAL-----KKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKT 1158
Query: 609 RLQEIEGLISSKEK 622
L++ +++++
Sbjct: 1159 ELEDTLDTTATQQE 1172
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 715 | |||
| 1c1g_A | 284 | Tropomyosin; contractIle protein; 7.00A {Sus scrof | 97.72 | |
| 1c1g_A | 284 | Tropomyosin; contractIle protein; 7.00A {Sus scrof | 97.43 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 96.79 | |
| 3na7_A | 256 | HP0958; flagellar biogenesis, flagellum export, C4 | 93.17 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 88.26 | |
| 3na7_A | 256 | HP0958; flagellar biogenesis, flagellum export, C4 | 86.19 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 85.86 | |
| 1e52_A | 63 | Excinuclease ABC subunit; DNA excision repair, UVR | 81.91 |
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.022 Score=50.56 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=15.3
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005076 580 VEKDGLQQEMEKAVLELEKLEENIEDTINRLQEIEG 615 (715)
Q Consensus 580 ~EKe~~~~~leka~~eLe~~E~~I~~t~~~lqe~Eg 615 (715)
.+...+...+......+..++..+...-..+..+.+
T Consensus 216 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 251 (284)
T 1c1g_A 216 QKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEK 251 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444333
|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
| >3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} | Back alignment and structure |
|---|
| >3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00