Citrus Sinensis ID: 005135

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710--
MPALGCCVDAAVAPPAYANSPLGSLPVPPPLPLSFISGAPPPTPMSPTSASAGSVAADVDSSHWSPSHSASLYKIDSWGAPYFAVNPSGNVSVRPYGHATLAHQEIDLLKIVKKVSDPKSVGGLGLQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILIFEAVSASVSRAAPVAMSPLGLQYLVEGLTEDARSDYTKMTTAALRAMEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAEEYCGQEHGSNGGDGDTDDYDHGMANNSALASSLAQYFHSMPYLVVPSSCSLTAINNGGGLYYCNGEDYDAVVDSSPNEDEQWSYCYA
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccEEEEEccccccccccccHHHHHHHHccccccccccccccEEEEcHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEcccccHHHHHHHHHcccccccccEEEcHHHHHHHHHcccccccccEEEEcccccHHHHHHHHHHccccccEEEEcccHHHHHHHHHHHHHcccccEEEEEEccccccccEEcccccccccccccHHHHHHHHHHHHHccccccEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccEEEccHHHHHHcccEEEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEccccccccHHHHccccccccccccccccccccEEEEcccccccccccEEcccccccccccccccccccccccEEEEEccHHHHHHHcccccccccccEEEEEEccccccEEEEEEcccccHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHcccccccHHHHHHHcccccccccccccccEEEEccccEEEEcccccccccccccccccccccccc
ccccHEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccEEEcccccEEEEcccccccccccccHHHHHHHHHcccccccccccccEEEEcHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEcccHHHHHHHHHccccccEEEEcccHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHHHHccccEEEEEEcHHHHHHHHHHHHHcccccEEEEEEEEEEcccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccccEEccccccccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEccHHHHHHHHHEEEEEHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHcHHHcEEEEEEEEcccccHHHHHHcccccEccccccccccEEEEEEEcccccccEEEEEccccccccccccccccccccccEEEHHHHHHHHHHHHcHHHccccccEEEEEEcccccEEEEEEEcccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHccccEcccccccHHHEEcccccEEEEcccccHHHccccccccccccEccc
mpalgccvdaavappayansplgslpvppplplsfisgappptpmsptsasagsvaadvdsshwspshsaslykidswgapyfavnpsgnvsvrpyghatLAHQEIDLLKIVKkvsdpksvgglglqlplivRLPDVLRDRLESLHSAFEFAIQTQGYearyqgvfpvkcnqdrfVVEDIVKFGsqfrfgleagskpELLLAMSCLckgspeallvcngfKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKklnvrpvigaraklrtkhsghfgstsgekgkfgltTTQILRVVKKLEVAEMLDCFQLLHfhigsqipstalltdgVGEAAQIYCELVRLGANMQVidiggglgidydgsksadsdlsVAYTLEEYASAVVQAIRYVCdrknvkhpvlcsesgraivSHHSILIFEAVSasvsraapvamspLGLQYLVEGLTEDARSDYTKMTTAALRAMEigasdpvrtyhvNLSIFtsipdywaigqlfpivpihhlderpgvrgvlsdltcdsdgkidkfigggtslplhemvgggcgergpyylgMFLGGAYEEalggvhnlfggpSVVRvlqsdgphsfavtrampgpscgdVLRVMQHEPELMFETLKHRAEeycgqehgsnggdgdtddydhgmanNSALASSLAQyfhsmpylvvpsscsltainnggglyycngedydavvdsspnedeqwsycya
MPALGCCVDAAVAPPAYANSPLGSLPVPPPLPLSFISGAPPPTPMSPTSASAGSVAADVDSSHWSPSHSASLYKIDSWGAPYFAVNPSGNVSVRPYGHATLAHQEIDLLKIVKKVSDPKsvgglglqlpliVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLvieiskklnvrpvigaraklrtkhsghfgstsgekgkfglttTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILIFEAVSASVSRAAPVAMSPLGLQYLVEGLTEDARSDYTKMTTAALRAMEigasdpvrTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAEEYCGQEHGSNGGDGDTDDYDHGMANNSALASSLAQYFHSMPYLVVPSSCSLTAINNGGGLYYCNGEDYDAVVDSspnedeqwsycya
MPALGCCVDAAVAPPAYANsplgslpvppplplsFIsgappptpmsptsasagsvaadvdsshwspshsasLYKIDSWGAPYFAVNPSGNVSVRPYGHATLAHQEIDLLKIVKKVSDPKSVGGLGLQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVidiggglgidydgSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILIFEavsasvsraapvaMSPLGLQYLVEGLTEDARSDYTKMTTAALRAMEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAEEYCGQEHgsnggdgdtddydhgMannsalasslaQYFHSMPYLVVPSSCSLTAINNGGGLYYCNGEDYDAVVDSSPNEDEQWSYCYA
****GCCVDAAVA*********************************************************SLYKIDSWGAPYFAVNPSGNVSVRPYGHATLAHQEIDLLKIVKKVSDPKSVGGLGLQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRT*************GKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILIFEAVSASVSRAAPVAMSPLGLQYLVEGLTEDARSDYTKMTTAALRAMEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETL**********************************ASSLAQYFHSMPYLVVPSSCSLTAINNGGGLYYCNGEDYDAVV***************
**ALGC*VDAAVAPPAYANSPLGSLPV****************************************HSASLYKIDSWGAPYFAVNPSGNVSVRPYGHATLAHQEIDLLKIVKKVSDPKSVGGLGLQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILIFEAVSASVSRAAPVAMSPLGLQYLVEGLTEDARSDYTKMTTAALRAMEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHR***************GDTDDYDHGMANNSALASSLAQYFHSMPYLVVPSSCSLTAINNGGGLYYCNGEDYDAVVDSSPNEDEQWSYCYA
MPALGCCVDAAVAPPAYANSPLGSLPVPPPLPLSFISGAPP***************************SASLYKIDSWGAPYFAVNPSGNVSVRPYGHATLAHQEIDLLKIVKKVSDPKSVGGLGLQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILIFEAVSASVSRAAPVAMSPLGLQYLVEGLTEDARSDYTKMTTAALRAMEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAEEYCGQEHGSNGGDGDTDDYDHGMANNSALASSLAQYFHSMPYLVVPSSCSLTAINNGGGLYYCNGEDYDAVV***************
*PALGCCVDAAVAPPAYANSPLGSLPVPPPLPLSFISG************************HWSPSHSASLYKIDSWGAPYFAVNPSGNVSVRPYGHATLAHQEIDLLKIVKKVSDPKSVGGLGLQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGS*****GKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILIFEAVSASVSRAAPVAMSPLGLQYLVEGLTEDARSDYTKMTTAALRAMEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAEEYCGQEHGS*********YDHGMANNSALASSLAQYFHSMPYLVVPSSCSLTAINNGGGLYYCNGEDYDAVVDSSPNEDEQWSYCYA
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MPALGCCVDAAVAPPAYANSPLGSLPVPPPLPLSFISGAPPPTPMSPTSASAGSVAADVDSSHWSPSHSASLYKIDSWGAPYFAVNPSGNVSVRPYGHATLAHQEIDLLKIVKKVSDPKSVGGLGLQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILIFEAVSASVSRAAPVAMSPLGLQYLVEGLTEDARSDYTKMTTAALRAMEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAEEYCGQEHGSNGGDGDTDDYDHGMANNSALASSLAQYFHSMPYLVVPSSCSLTAINNGGGLYYCNGEDYDAVVDSSPNEDEQWSYCYA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query712 2.2.26 [Sep-21-2011]
Q43075728 Arginine decarboxylase OS N/A no 0.955 0.934 0.640 0.0
Q9SI64702 Arginine decarboxylase 1 yes no 0.919 0.933 0.648 0.0
O23141711 Arginine decarboxylase 2 no no 0.932 0.933 0.645 0.0
O82475702 Arginine decarboxylase OS N/A no 0.838 0.850 0.685 0.0
Q39827692 Arginine decarboxylase OS yes no 0.849 0.874 0.674 0.0
Q96412725 Arginine decarboxylase OS N/A no 0.946 0.929 0.617 0.0
Q9SNN0702 Arginine decarboxylase 1 yes no 0.783 0.794 0.641 0.0
P49726502 Arginine decarboxylase OS N/A no 0.647 0.918 0.713 0.0
O81160406 Arginine decarboxylase (F N/A no 0.512 0.899 0.7 1e-154
Q7XRA1623 Arginine decarboxylase 2 no no 0.758 0.866 0.456 1e-146
>sp|Q43075|SPE1_PEA Arginine decarboxylase OS=Pisum sativum PE=2 SV=1 Back     alignment and function desciption
 Score =  960 bits (2482), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/757 (64%), Positives = 564/757 (74%), Gaps = 77/757 (10%)

Query: 1   MPALGCCVDAAVA---PPAYANSPLGSLPVPPPLPLSFISGAPPPTPMSPTSASAGSVAA 57
           MPAL C VD A A   PP YA +   +LP    LP +F + A         +  A + A 
Sbjct: 1   MPALTCFVDGAAALLHPPGYALAGDFTLP----LPFTFSAAAT-------ITDDADATAV 49

Query: 58  DVDSSHWSPSHSASLYKIDSWGAPYFAVNPSGNVSVRPYGHATLAHQEIDLLKIVKKVSD 117
           +  +S WSPS S+ L++ID WG PYF VN +G++SVRP+G AT++HQEIDLLK+VKK SD
Sbjct: 50  EDSNSIWSPSLSSKLFRIDGWGFPYFGVNAAGDISVRPHGSATMSHQEIDLLKVVKKASD 109

Query: 118 PKSVGGLGLQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVV 177
           PK  GGLGLQLPL+VR PDVL+DRLES+H+AF+ AIQ QGYE+ YQGV+PVKCNQDR++V
Sbjct: 110 PKCCGGLGLQLPLVVRFPDVLKDRLESIHAAFDGAIQLQGYESHYQGVYPVKCNQDRYIV 169

Query: 178 EDIVKFGSQFRFGLEAGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDL 237
           EDIV+FGS FRFGLEAGSKPELLLAMSCLCKG+ EA LVCNGFKD+ YI+LAL+ARKL L
Sbjct: 170 EDIVEFGSSFRFGLEAGSKPELLLAMSCLCKGNREAFLVCNGFKDSEYISLALIARKLAL 229

Query: 238 NVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQIL 297
           N VIVLEQEEE+D+V+EIS KL +RPVIG RAKL+TKHSGHFG+TSG+KGKFGLTT QIL
Sbjct: 230 NTVIVLEQEEELDMVVEISNKLCIRPVIGVRAKLKTKHSGHFGATSGDKGKFGLTTIQIL 289

Query: 298 RVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGG 357
            VVKKLE  +MLDC QLLHFHIGSQIP+T LL DGV EA+QIYCEL+RLGA M+V+DIGG
Sbjct: 290 HVVKKLEQLDMLDCLQLLHFHIGSQIPTTELLADGVREASQIYCELLRLGAQMKVLDIGG 349

Query: 358 GLGIDYDGSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHS 417
           GLGIDYDGSKS DSD SVAY LEEYA+AVV A++YVCDRKNVKHPV+CSESGRAIVSHHS
Sbjct: 350 GLGIDYDGSKSGDSDESVAYGLEEYAAAVVHAVKYVCDRKNVKHPVICSESGRAIVSHHS 409

Query: 418 ILIFEAVSASVSRAAPVAMSPLGLQYLVEGLTEDARSDYTKMTTAALR------------ 465
           ILIFEA  AS + A   ++S + LQYL EGL+E+A +DY  ++ A LR            
Sbjct: 410 ILIFEASGASTNTAP--SLSSIELQYLGEGLSEEALADYQNISAATLRGEYEACLLYTEQ 467

Query: 466 -----------------------------AMEIGASDPVRTYHVNLSIFTSIPDYWAIGQ 496
                                           IG  DPV+ YHVNLS+FTS+PD+W I Q
Sbjct: 468 FKKRCVEEFKQGTLGIEQLAAVDGLCDLITETIGVKDPVKKYHVNLSVFTSVPDFWGINQ 527

Query: 497 LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLG 556
           LFPIVPIH LDE+P  RG+LSDLTCDSDGKIDKFIGG +SLPLHEM G G    G YYLG
Sbjct: 528 LFPIVPIHRLDEKPTARGILSDLTCDSDGKIDKFIGGESSLPLHEMEGHG----GGYYLG 583

Query: 557 MFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPELM 616
           MFLGG+YEEALGG+HNLFGGPSVVRVLQSDGPH FAVTRA+ G SC DVLRVMQHEP+LM
Sbjct: 584 MFLGGSYEEALGGLHNLFGGPSVVRVLQSDGPHGFAVTRAVAGSSCADVLRVMQHEPQLM 643

Query: 617 FETLKHRAEEYCGQEHGSNGGDGDTDDYDHGMANNSALASSLAQYFHSMPYLVVPSSCSL 676
           FETLKHRA E+CGQ              D  + N   LA+SLAQ F +MPYLV  ++C L
Sbjct: 644 FETLKHRALEFCGQHD------------DDSVVNAGVLANSLAQSFDNMPYLVSSTTCCL 691

Query: 677 TAINNGGGLYYCNGEDYDA----VVDSSPNEDEQWSY 709
            A+ N  G YYC+G+D+ A    V  S   EDE WSY
Sbjct: 692 NALTNNNGFYYCSGDDFSADTVSVATSVAGEDENWSY 728

Pisum sativum (taxid: 3888)
EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 9
>sp|Q9SI64|SPE1_ARATH Arginine decarboxylase 1 OS=Arabidopsis thaliana GN=SPE1 PE=2 SV=1 Back     alignment and function description
>sp|O23141|SPE2_ARATH Arginine decarboxylase 2 OS=Arabidopsis thaliana GN=SPE2 PE=2 SV=1 Back     alignment and function description
>sp|O82475|SPE1_BRAJU Arginine decarboxylase OS=Brassica juncea GN=ADC1 PE=2 SV=1 Back     alignment and function description
>sp|Q39827|SPE1_SOYBN Arginine decarboxylase OS=Glycine max PE=2 SV=1 Back     alignment and function description
>sp|Q96412|SPE1_DIACA Arginine decarboxylase OS=Dianthus caryophyllus GN=ADC PE=2 SV=1 Back     alignment and function description
>sp|Q9SNN0|SPE1_ORYSJ Arginine decarboxylase 1 OS=Oryza sativa subsp. japonica GN=ADC1 PE=1 SV=1 Back     alignment and function description
>sp|P49726|SPE1_SOLLC Arginine decarboxylase OS=Solanum lycopersicum PE=2 SV=1 Back     alignment and function description
>sp|O81160|SPE2_THECC Arginine decarboxylase (Fragment) OS=Theobroma cacao GN=SPE2 PE=3 SV=1 Back     alignment and function description
>sp|Q7XRA1|ADC2_ORYSJ Arginine decarboxylase 2 OS=Oryza sativa subsp. japonica GN=ADC2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query712
332739606751 arginine decarboxylase [Citrus trifoliat 0.997 0.945 0.915 0.0
224080476730 predicted protein [Populus trichocarpa] 0.966 0.942 0.719 0.0
225427782720 PREDICTED: arginine decarboxylase [Vitis 0.946 0.936 0.686 0.0
195976673725 arginine decarboxylase [Prunus persica] 0.953 0.936 0.692 0.0
394305089720 arginine decarboxylase [Camellia sinensi 0.948 0.937 0.685 0.0
374256639738 arginine decarboxylase [Carica papaya] 0.970 0.936 0.694 0.0
56377971728 arginine decarboxylase [Malus x domestic 0.953 0.932 0.675 0.0
40645472733 arginine decarboxylase [Nicotiana tabacu 0.966 0.938 0.678 0.0
183178878728 arginine decarboxylase [Malus hupehensis 0.953 0.932 0.670 0.0
84468436729 putative arginine decarboxylase [Trifoli 0.957 0.935 0.641 0.0
>gi|332739606|gb|AEE99192.1| arginine decarboxylase [Citrus trifoliata] Back     alignment and taxonomy information
 Score = 1323 bits (3423), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 689/753 (91%), Positives = 695/753 (92%), Gaps = 43/753 (5%)

Query: 1   MPALGCCVDAAVAPPAYANSPLGSLPVPPPLPLSFISGAPPPTPMSPTSASAGSVAADVD 60
           MPALGCCVDAAVAPPAYANSPLGSLP PPPLPLSF SG  PPTPMSPTSASAGSVAADVD
Sbjct: 1   MPALGCCVDAAVAPPAYANSPLGSLPAPPPLPLSFNSGTSPPTPMSPTSASAGSVAADVD 60

Query: 61  SSHWSPSHSASLYKIDSWGAPYFAVNPSGNVSVRPYGHATLAHQEIDLLKIVKKVSDPKS 120
           +SHWSPSHSASLYKIDSWGAPYFAVNPSGNVSVRPYGHATLAHQEIDLLKIVKKV+DPKS
Sbjct: 61  ASHWSPSHSASLYKIDSWGAPYFAVNPSGNVSVRPYGHATLAHQEIDLLKIVKKVTDPKS 120

Query: 121 VGGLGLQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDI 180
           VGGLGLQLPLIVRLPDVLRDRLESL SAFEFAIQTQ YEA YQGVFPVKCNQDRFVVEDI
Sbjct: 121 VGGLGLQLPLIVRLPDVLRDRLESLQSAFEFAIQTQCYEAHYQGVFPVKCNQDRFVVEDI 180

Query: 181 VKFGSQFRFGLEAGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVV 240
           VKFGSQFRFGLEAGSKPELLLAMSCLCKGSPEALLVCNGFKDA YITLALLARKL LN V
Sbjct: 181 VKFGSQFRFGLEAGSKPELLLAMSCLCKGSPEALLVCNGFKDAEYITLALLARKLALNAV 240

Query: 241 IVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVV 300
           IVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFG+TSGEKGKFGLTT QILRVV
Sbjct: 241 IVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGATSGEKGKFGLTTCQILRVV 300

Query: 301 KKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLG 360
           KKLE+AEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLG
Sbjct: 301 KKLELAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLG 360

Query: 361 IDYDGSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILI 420
           IDYDGSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILI
Sbjct: 361 IDYDGSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILI 420

Query: 421 FEAVSASVSRAAPVAMSPLGLQYLVEGLTEDARSDYTKMTTAALR--------------- 465
           FEAVSASVSRAAPVAMSPLGLQYLVEGLTEDARSDYTKMTTAALR               
Sbjct: 421 FEAVSASVSRAAPVAMSPLGLQYLVEGLTEDARSDYTKMTTAALRGEFETCLFYADQLKQ 480

Query: 466 --------------------------AMEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFP 499
                                     A EIGASDPVRTYHVNLSIFTSIPDYW IGQLFP
Sbjct: 481 RCIEQFKDGTLGIEQLATVDGLCDFVAKEIGASDPVRTYHVNLSIFTSIPDYWGIGQLFP 540

Query: 500 IVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFL 559
           IVPIHHLDERPGVRG+LSDLTCDSDGKIDKFIGGGTSLPLHEMVGGG GERGPYYLGMFL
Sbjct: 541 IVPIHHLDERPGVRGILSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGGGERGPYYLGMFL 600

Query: 560 GGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPELMFET 619
           GGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPELMFET
Sbjct: 601 GGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPELMFET 660

Query: 620 LKHRAEEYCGQEHGSNGGDGDTDDYDHGMANNSALASSLAQYFHSMPYLVVPSSCSLTAI 679
           LKHRAEE CGQEHGSNGG+GDTDDY  GMANNSALASSLAQYFHSMPYLVVPSSCSLTAI
Sbjct: 661 LKHRAEECCGQEHGSNGGNGDTDDY--GMANNSALASSLAQYFHSMPYLVVPSSCSLTAI 718

Query: 680 NNGGGLYYCNGEDYDAVVDSSPNEDEQWSYCYA 712
           NNGGGLYYCNGEDYDAVVDSSPNEDEQWSYCYA
Sbjct: 719 NNGGGLYYCNGEDYDAVVDSSPNEDEQWSYCYA 751

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224080476|ref|XP_002306141.1| predicted protein [Populus trichocarpa] gi|222849105|gb|EEE86652.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225427782|ref|XP_002269030.1| PREDICTED: arginine decarboxylase [Vitis vinifera] Back     alignment and taxonomy information
>gi|195976673|dbj|BAG68575.1| arginine decarboxylase [Prunus persica] Back     alignment and taxonomy information
>gi|394305089|gb|AFN26936.1| arginine decarboxylase [Camellia sinensis] Back     alignment and taxonomy information
>gi|374256639|gb|AEZ01223.1| arginine decarboxylase [Carica papaya] Back     alignment and taxonomy information
>gi|56377971|dbj|BAD74163.1| arginine decarboxylase [Malus x domestica] Back     alignment and taxonomy information
>gi|40645472|dbj|BAD06581.1| arginine decarboxylase [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|183178878|gb|ACC43927.1| arginine decarboxylase [Malus hupehensis] Back     alignment and taxonomy information
>gi|84468436|dbj|BAE71301.1| putative arginine decarboxylase [Trifolium pratense] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query712
TAIR|locus:2139629711 ADC2 "arginine decarboxylase 2 0.549 0.549 0.718 1.2e-226
TAIR|locus:2045111702 ADC1 "arginine decarboxylase 1 0.542 0.549 0.700 3.6e-222
UNIPROTKB|Q9SNN0702 ADC1 "Arginine decarboxylase 1 0.546 0.554 0.632 2.6e-195
TIGR_CMR|SPO_0602661 SPO_0602 "arginine decarboxyla 0.476 0.512 0.362 1.9e-91
TIGR_CMR|GSU_2537635 GSU_2537 "biosynthetic arginin 0.471 0.529 0.377 2.4e-87
UNIPROTKB|P21170658 speA "SpeA" [Escherichia coli 0.470 0.509 0.385 1.7e-86
TIGR_CMR|SO_1870637 SO_1870 "biosynthetic arginine 0.473 0.529 0.390 2.5e-83
UNIPROTKB|Q9KLD1640 speA "Biosynthetic arginine de 0.471 0.525 0.378 1.1e-80
TIGR_CMR|VC_A0815640 VC_A0815 "biosynthetic arginin 0.471 0.525 0.378 1.1e-80
TIGR_CMR|CJE_0855611 CJE_0855 "arginine decarboxyla 0.460 0.536 0.322 2.3e-66
TAIR|locus:2139629 ADC2 "arginine decarboxylase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1455 (517.2 bits), Expect = 1.2e-226, Sum P(3) = 1.2e-226
 Identities = 283/394 (71%), Positives = 328/394 (83%)

Query:    72 LYKIDSWGAPYFAVNPSGNVSVRPYGHATLAHQEIDLLKIVKKVSDPKSVGGLGLQLPLI 131
             LY+ID WGAPYF  N SGN+SVRP+G  TL HQ+IDLLKIVKKV+ PKS GGLGLQLPLI
Sbjct:    50 LYRIDGWGAPYFIANSSGNISVRPHGSETLPHQDIDLLKIVKKVTGPKSSGGLGLQLPLI 109

Query:   132 VRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGL 191
             VR PDVL++RLE L SAF++AI++QGY++ YQGV+PVKCNQDRFVVEDIVKFGS FRFGL
Sbjct:   110 VRFPDVLKNRLECLQSAFDYAIKSQGYDSHYQGVYPVKCNQDRFVVEDIVKFGSSFRFGL 169

Query:   192 EAGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDL 251
             EAGSKPE+LLAMSCLCKGSP+A LVCNGFKDA YI+LALL RKL LN VIVLEQEEE+DL
Sbjct:   170 EAGSKPEILLAMSCLCKGSPDAFLVCNGFKDAEYISLALLGRKLALNTVIVLEQEEELDL 229

Query:   252 VIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDC 311
             VIE+S+K+NVRPVIG RAKLRTKHSGHFGSTSGEKGKFGLTTTQI+RVV+KL  + MLDC
Sbjct:   230 VIELSQKMNVRPVIGLRAKLRTKHSGHFGSTSGEKGKFGLTTTQIVRVVRKLRQSGMLDC 289

Query:   312 FQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVXXXXXXXXXXXXXSKSADS 371
              QLLHFHIGSQIPST+LL+DGV EAAQ+YCELVRLGA+M+V             SKS +S
Sbjct:   290 LQLLHFHIGSQIPSTSLLSDGVAEAAQLYCELVRLGAHMKVIDIGGGLGIDYDGSKSGES 349

Query:   372 DLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILIFEXXXXXXXXX 431
             DLSVAY+LEEYA AVV ++R VCDR +VKHPV+CSESGRAIVSHHS+LIFE         
Sbjct:   350 DLSVAYSLEEYAEAVVASVRVVCDRSSVKHPVICSESGRAIVSHHSVLIFEAVSADKPMV 409

Query:   432 XXXXMSPLGLQYLVEGLTEDARSDYTKMTTAALR 465
                  +P  +Q+L+EG  E+AR++Y  +  A +R
Sbjct:   410 HQA--TPGDIQFLLEG-NEEARANYEDLYAAVMR 440
GO:0003824 "catalytic activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0006527 "arginine catabolic process" evidence=IEA
GO:0008295 "spermidine biosynthetic process" evidence=IEA
GO:0008792 "arginine decarboxylase activity" evidence=IEA;IMP
GO:0006596 "polyamine biosynthetic process" evidence=IMP
GO:0006970 "response to osmotic stress" evidence=IMP
GO:0009611 "response to wounding" evidence=IEP;RCA
GO:0009737 "response to abscisic acid stimulus" evidence=IEP
GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA
GO:0009651 "response to salt stress" evidence=IMP
GO:0006979 "response to oxidative stress" evidence=IEP;RCA
GO:0009446 "putrescine biosynthetic process" evidence=IMP
GO:0048316 "seed development" evidence=IGI
GO:0009409 "response to cold" evidence=IMP
GO:0080167 "response to karrikin" evidence=IEP
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0007165 "signal transduction" evidence=RCA
GO:0009414 "response to water deprivation" evidence=RCA
GO:0009620 "response to fungus" evidence=RCA
GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA
GO:0009723 "response to ethylene stimulus" evidence=RCA
GO:0009733 "response to auxin stimulus" evidence=RCA
GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA
GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0042538 "hyperosmotic salinity response" evidence=RCA
TAIR|locus:2045111 ADC1 "arginine decarboxylase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9SNN0 ADC1 "Arginine decarboxylase 1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0602 SPO_0602 "arginine decarboxylase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2537 GSU_2537 "biosynthetic arginine decarboxylase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|P21170 speA "SpeA" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|SO_1870 SO_1870 "biosynthetic arginine decarboxylase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KLD1 speA "Biosynthetic arginine decarboxylase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_A0815 VC_A0815 "biosynthetic arginine decarboxylase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_0855 CJE_0855 "arginine decarboxylase" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q96412SPE1_DIACA4, ., 1, ., 1, ., 1, 90.61730.94660.9296N/Ano
Q9SI64SPE1_ARATH4, ., 1, ., 1, ., 1, 90.64810.91990.9330yesno
Q39827SPE1_SOYBN4, ., 1, ., 1, ., 1, 90.67450.84970.8742yesno
O82475SPE1_BRAJU4, ., 1, ., 1, ., 1, 90.68530.83840.8504N/Ano
Q43075SPE1_PEA4, ., 1, ., 1, ., 1, 90.64060.95500.9340N/Ano
Q9SNN0SPE1_ORYSJ4, ., 1, ., 1, ., 1, 90.64140.78370.7948yesno
P49726SPE1_SOLLC4, ., 1, ., 1, ., 1, 90.71340.64740.9183N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer4.1.1.190.991
3rd Layer4.1.10.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query712
PLN02439559 PLN02439, PLN02439, arginine decarboxylase 0.0
TIGR01273624 TIGR01273, speA, arginine decarboxylase, biosynthe 0.0
PRK05354634 PRK05354, PRK05354, arginine decarboxylase; Provis 0.0
cd06830409 cd06830, PLPDE_III_ADC, Type III Pyridoxal 5-phosp 0.0
COG1166652 COG1166, SpeA, Arginine decarboxylase (spermidine 1e-148
pfam02784245 pfam02784, Orn_Arg_deC_N, Pyridoxal-dependent deca 1e-55
cd06810368 cd06810, PLPDE_III_ODC_DapDC_like, Type III Pyrido 2e-49
COG1166652 COG1166, SpeA, Arginine decarboxylase (spermidine 1e-42
COG0019394 COG0019, LysA, Diaminopimelate decarboxylase [Amin 6e-24
cd06828373 cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-pho 7e-24
TIGR01048414 TIGR01048, lysA, diaminopimelate decarboxylase 1e-22
pfam00278110 pfam00278, Orn_DAP_Arg_deC, Pyridoxal-dependent de 6e-17
cd06841379 cd06841, PLPDE_III_MccE_like, Type III Pyridoxal 5 1e-15
cd06836379 cd06836, PLPDE_III_ODC_DapDC_like_1, Type III Pyri 2e-12
cd00622362 cd00622, PLPDE_III_ODC, Type III Pyridoxal 5-phosp 8e-11
cd06842423 cd06842, PLPDE_III_Y4yA_like, Type III Pyridoxal 5 2e-10
cd06808211 cd06808, PLPDE_III, Type III Pyridoxal 5-phosphate 7e-09
cd06839382 cd06839, PLPDE_III_Btrk_like, Type III Pyridoxal 5 8e-09
TIGR03099398 TIGR03099, dCO2ase_PEP1, pyridoxal-dependent decar 3e-05
PRK08961861 PRK08961, PRK08961, bifunctional aspartate kinase/ 1e-04
cd06840368 cd06840, PLPDE_III_Bif_AspK_DapDC, Type III Pyrido 1e-04
>gnl|CDD|215240 PLN02439, PLN02439, arginine decarboxylase Back     alignment and domain information 
 Score =  927 bits (2399), Expect = 0.0
 Identities = 400/581 (68%), Positives = 449/581 (77%), Gaps = 64/581 (11%)

Query: 130 LIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRF 189
           LIVR PDVL++RLESL SAF++AIQ+QGY + YQGVFPVKCNQDRF+VEDIVKFGS FRF
Sbjct: 1   LIVRFPDVLKNRLESLQSAFDYAIQSQGYNSHYQGVFPVKCNQDRFLVEDIVKFGSPFRF 60

Query: 190 GLEAGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEV 249
           GLEAGSKPELLLAMSCLCKGSP+A L+CNG+KDA Y++LALLARKL LN VIVLEQEEE+
Sbjct: 61  GLEAGSKPELLLAMSCLCKGSPDAFLICNGYKDAEYVSLALLARKLGLNTVIVLEQEEEL 120

Query: 250 DLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEML 309
           DLVIE S++L VRPVIG RAKLRTKHSGHFGSTSGEKGKFGLT T+I+RVV+KL    ML
Sbjct: 121 DLVIEASQRLGVRPVIGVRAKLRTKHSGHFGSTSGEKGKFGLTATEIVRVVRKLRKEGML 180

Query: 310 DCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGSKSA 369
           DC QLLHFHIGSQIPST+LL DGV EAAQIYCELVRLGA M+VIDIGGGLGIDYDGSKS 
Sbjct: 181 DCLQLLHFHIGSQIPSTSLLKDGVSEAAQIYCELVRLGAPMRVIDIGGGLGIDYDGSKSG 240

Query: 370 DSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILIFEAVSASVS 429
            SD+SVAY+LEEYA+AVV A+R VCDRK VKHPV+CSESGRA+VSHHS+LIFEAVSAS  
Sbjct: 241 SSDMSVAYSLEEYANAVVAAVRDVCDRKGVKHPVICSESGRALVSHHSVLIFEAVSASKR 300

Query: 430 RAAPVAMSPLGLQYLVEGLTEDARSDYTKMTTAALR------------------------ 465
               V  +    QYL+ GLTE+ R+DY  +  AA R                        
Sbjct: 301 ---GVPAADDDDQYLLLGLTEELRADYENLYAAADRGDYEECLLYADQLKQECVRLFKEG 357

Query: 466 -----------------AMEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDE 508
                            +  +GASDPV TYH+NLS+FTSIPD+WAIGQLFPIVP+H LDE
Sbjct: 358 LLSLEQRAAVDGLCELVSKRVGASDPVATYHINLSVFTSIPDFWAIGQLFPIVPLHRLDE 417

Query: 509 RPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALG 568
           RP VRG+LSDLTCDSDGKIDKFIGG  SLPLHE+   G    GPYYLGMFLGGAY+EALG
Sbjct: 418 RPTVRGILSDLTCDSDGKIDKFIGGEGSLPLHELEKNG---GGPYYLGMFLGGAYQEALG 474

Query: 569 GVHNLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAEEYC 628
            +HNLFGGPSVVRV QSDGP  FAVTRA+PG SC DVLR MQHEPELMFETLKHRAEEY 
Sbjct: 475 SLHNLFGGPSVVRVSQSDGPGGFAVTRAVPGQSCADVLRAMQHEPELMFETLKHRAEEYV 534

Query: 629 GQEHGSNGGDGDTDDYDHGMANNSALASSLAQYFHSMPYLV 669
            +   S                  A+A++LA+ FH+MPYL 
Sbjct: 535 HKGGLSG-----------------AVAANLARSFHNMPYLS 558

Length = 559
>gnl|CDD|233337 TIGR01273, speA, arginine decarboxylase, biosynthetic Back     alignment and domain information
>gnl|CDD|235427 PRK05354, PRK05354, arginine decarboxylase; Provisional Back     alignment and domain information
>gnl|CDD|143503 cd06830, PLPDE_III_ADC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase Back     alignment and domain information
>gnl|CDD|224088 COG1166, SpeA, Arginine decarboxylase (spermidine biosynthesis) [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|217230 pfam02784, Orn_Arg_deC_N, Pyridoxal-dependent decarboxylase, pyridoxal binding domain Back     alignment and domain information
>gnl|CDD|143485 cd06810, PLPDE_III_ODC_DapDC_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes Back     alignment and domain information
>gnl|CDD|224088 COG1166, SpeA, Arginine decarboxylase (spermidine biosynthesis) [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|223098 COG0019, LysA, Diaminopimelate decarboxylase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|143501 cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase Back     alignment and domain information
>gnl|CDD|233248 TIGR01048, lysA, diaminopimelate decarboxylase Back     alignment and domain information
>gnl|CDD|215835 pfam00278, Orn_DAP_Arg_deC, Pyridoxal-dependent decarboxylase, C-terminal sheet domain Back     alignment and domain information
>gnl|CDD|143508 cd06841, PLPDE_III_MccE_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme MccE Back     alignment and domain information
>gnl|CDD|143505 cd06836, PLPDE_III_ODC_DapDC_like_1, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases Back     alignment and domain information
>gnl|CDD|143482 cd00622, PLPDE_III_ODC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase Back     alignment and domain information
>gnl|CDD|143509 cd06842, PLPDE_III_Y4yA_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA Back     alignment and domain information
>gnl|CDD|143484 cd06808, PLPDE_III, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Back     alignment and domain information
>gnl|CDD|143506 cd06839, PLPDE_III_Btrk_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase Back     alignment and domain information
>gnl|CDD|132143 TIGR03099, dCO2ase_PEP1, pyridoxal-dependent decarboxylase, exosortase A system-associated Back     alignment and domain information
>gnl|CDD|236358 PRK08961, PRK08961, bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional Back     alignment and domain information
>gnl|CDD|143507 cd06840, PLPDE_III_Bif_AspK_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bifunctional Aspartate Kinase/Diaminopimelate Decarboxylase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 712
COG1166652 SpeA Arginine decarboxylase (spermidine biosynthes 100.0
PRK05354634 arginine decarboxylase; Provisional 100.0
TIGR01273624 speA arginine decarboxylase, biosynthetic. A disti 100.0
PLN02439559 arginine decarboxylase 100.0
cd06830409 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP) 100.0
COG0019394 LysA Diaminopimelate decarboxylase [Amino acid tra 100.0
TIGR01048417 lysA diaminopimelate decarboxylase. This family co 100.0
PLN02537410 diaminopimelate decarboxylase 100.0
cd06831394 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosph 100.0
PRK11165420 diaminopimelate decarboxylase; Provisional 100.0
cd06836379 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-ph 100.0
cd06810368 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phos 100.0
cd06840368 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phos 100.0
TIGR01047380 nspC carboxynorspermidine decarboxylase. This prot 100.0
KOG0622448 consensus Ornithine decarboxylase [Amino acid tran 100.0
cd06839382 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate 100.0
cd06828373 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PL 100.0
TIGR03099398 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, ex 100.0
cd06841379 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate 100.0
cd06843377 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate 100.0
cd06829346 PLPDE_III_CANSDC Type III Pyridoxal 5-phosphate (P 100.0
cd00622362 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP) 100.0
cd06842423 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate 100.0
PRK08961861 bifunctional aspartate kinase/diaminopimelate deca 100.0
PF02784251 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, 100.0
cd06808211 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dep 99.95
cd06819358 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate ( 99.91
cd06812374 PLPDE_III_DSD_D-TA_like_1 Type III Pyridoxal 5-pho 99.9
cd00430367 PLPDE_III_AR Type III Pyridoxal 5-phosphate (PLP)- 99.9
cd06818382 PLPDE_III_cryptic_DSD Type III Pyridoxal 5-phospha 99.88
cd06820353 PLPDE_III_LS_D-TA_like Type III Pyridoxal 5-phosph 99.84
cd06813388 PLPDE_III_DSD_D-TA_like_2 Type III Pyridoxal 5-pho 99.82
cd06821361 PLPDE_III_D-TA Type III Pyridoxal 5-phosphate (PLP 99.81
PF00278116 Orn_DAP_Arg_deC: Pyridoxal-dependent decarboxylase 99.79
cd06811382 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate 99.77
TIGR00492367 alr alanine racemase. This enzyme interconverts L- 99.76
PRK00053363 alr alanine racemase; Reviewed 99.69
PRK13340406 alanine racemase; Reviewed 99.68
cd00635222 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosph 99.64
cd07376345 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosp 99.6
cd06826365 PLPDE_III_AR2 Type III Pyridoxal 5-phosphate (PLP) 99.55
cd06817389 PLPDE_III_DSD Type III Pyridoxal 5-phosphate (PLP) 99.49
cd06827354 PLPDE_III_AR_proteobact Type III Pyridoxal 5-phosp 99.49
cd06814379 PLPDE_III_DSD_D-TA_like_3 Type III Pyridoxal 5-pho 99.48
cd06815353 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate 99.33
cd06824224 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-bi 99.28
PF01168218 Ala_racemase_N: Alanine racemase, N-terminal domai 99.26
TIGR00044229 pyridoxal phosphate enzyme, YggS family. Members o 99.18
COG3616368 Predicted amino acid aldolase or racemase [Amino a 99.03
PRK11930822 putative bifunctional UDP-N-acetylmuramoyl-tripept 99.0
cd06825368 PLPDE_III_VanT Type III Pyridoxal 5-phosphate (PLP 98.93
PRK03646355 dadX alanine racemase; Reviewed 98.72
COG0787360 Alr Alanine racemase [Cell envelope biogenesis, ou 98.55
COG3457353 Predicted amino acid racemase [Amino acid transpor 98.41
cd06822227 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)- 98.36
COG0325228 Predicted enzyme with a TIM-barrel fold [General f 98.29
KOG3157244 consensus Proline synthetase co-transcribed protei 96.04
cd03174265 DRE_TIM_metallolyase DRE-TIM metallolyase superfam 92.03
PRK08195337 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac 89.51
cd07948262 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s 89.24
cd07937275 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar 89.01
cd07939259 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and 88.12
cd07943263 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te 86.95
TIGR03217333 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. 86.18
PRK11858378 aksA trans-homoaconitate synthase; Reviewed 86.16
cd07940268 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N- 85.27
TIGR02090363 LEU1_arch isopropylmalate/citramalate/homocitrate 81.01
>COG1166 SpeA Arginine decarboxylase (spermidine biosynthesis) [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=2.1e-137  Score=1116.74  Aligned_cols=575  Identities=43%  Similarity=0.738  Sum_probs=523.6

Q ss_pred             CCCCCHHhhhhhhcCCCCCCCCceeCCCccEEEecCCCCcCCcCCcCHHHHHHHhCCCCCCCCCCCCCcEEEEcHHHHHH
Q 005135           61 SSHWSPSHSASLYKIDSWGAPYFAVNPSGNVSVRPYGHATLAHQEIDLLKIVKKVSDPKSVGGLGLQLPLIVRLPDVLRD  140 (712)
Q Consensus        61 ~~~w~~~~~~~ly~i~~wg~~yf~i~~~G~l~v~p~~~~~l~~~~i~l~el~~~~~~~~~~~~~g~~tPl~V~d~d~L~~  140 (712)
                      .+.|++++++++|+|++||.|||.||+.|+|+|+|.++   +...+||.+|+++++++      |++.|++++|+++|.+
T Consensus        22 ~~~~~~~~~~~~Y~I~~Wg~~yF~In~~G~v~V~P~~~---~~~~~dL~elV~~l~~~------g~~LPlL~rFp~IL~~   92 (652)
T COG1166          22 MSSWTIDDSRELYNINHWGNGYFDINDAGHVTVCPDPD---PGARVDLAELVKALRDR------GLRLPLLLRFPQILQH   92 (652)
T ss_pred             cccccHHHHHHhcCcccccCcceeecCCccEEEecCCC---ccccccHHHHHHHHHhc------CCCCceEEechHHHHH
Confidence            34599999999999999999999999999999999876   36789999999999999      8999999999999999


Q ss_pred             HHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHHhcCCCCCCcEEEeCCC
Q 005135          141 RLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSCLCKGSPEALLVCNGF  220 (712)
Q Consensus       141 ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~G~~~~p~~II~~ng~  220 (712)
                      |+++|+.||.+|+++++|.+.|+.+|||||||++.|++.|++.|.++++|+|++||+||++||+..  ..|..+|+||||
T Consensus        93 Rl~~ln~aF~~Ai~ey~Y~g~Y~~VyPIKvNQ~r~vVe~Lv~~g~~~~~GLEAGSK~ELm~vLA~~--~~~~~~IvCNGy  170 (652)
T COG1166          93 RLRSLNAAFARAIEEYGYPGGYFAVYPIKVNQHRRVVESLVASGKGYPLGLEAGSKAELMAVLAHA--GNPGSLIVCNGY  170 (652)
T ss_pred             HHHHHHHHHHHHHHHhCCCCceeEEEEeeecchHHHHHHHHhccCCCCCcccCCCHHHHHHHHHhc--CCCCCeEEecCc
Confidence            999999999999999999999999999999999999999999998888999999999999999986  367889999999


Q ss_pred             CCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHH
Q 005135          221 KDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVV  300 (712)
Q Consensus       221 K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l  300 (712)
                      ||+|+|++|+.++++|++++||||.++||+.+++.|+++|++|++|||+++.+.++|+|+++||++||||+++.|+++++
T Consensus       171 KDrEyI~lAlig~kLGh~v~ivIEklsEl~~VleeA~~lgvkP~lGvR~RL~sqGsGkW~~SgG~ksKFGLsa~qvL~~v  250 (652)
T COG1166         171 KDREYIRLALIGEKLGHKVYIVIEKLSELDLVLEEAKQLGVKPRLGVRARLASQGSGKWQSSGGEKSKFGLSATQVLQVV  250 (652)
T ss_pred             ccHHHHHHHHHHHHhCCceEEEEechHHHHHHHHHHHHcCCCCcceeEEEEecccccccccccCchhccCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcCCCCCCCCCCCcCCCHH
Q 005135          301 KKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGSKSADSDLSVAYTLE  380 (712)
Q Consensus       301 ~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~~s~~~~~~~s~~ysle  380 (712)
                      ++|++.++|+||+.||||+||||.|+++++.+++|+.++|.+|+++|++++++|+||||||+|+|+++. +++|+||+++
T Consensus       251 ~~Lre~~~Ld~l~llHFHlGSQisnI~~ik~~~rEA~r~YvEL~klGa~i~~~dVGGGLgVDYdGt~t~-~~~S~NY~l~  329 (652)
T COG1166         251 ERLREANLLDSLQLLHFHLGSQISNIRDIKTGVREAARFYVELRKLGANIKYFDVGGGLGVDYDGTRTQ-SDCSKNYGLN  329 (652)
T ss_pred             HHHHhcchHHhhHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHcCCCceEEeccCceeecccCcccc-ccccccCCHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999986 5899999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCeEEecCcchhccccceEEEEEEEEEecCC-CCCCCCc-chhhHhhhc-------hh-h
Q 005135          381 EYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILIFEAVSASVSRA-APVAMSP-LGLQYLVEG-------LT-E  450 (712)
Q Consensus       381 eya~~Iv~~l~~~~~~~gv~~p~Li~EPGRalvA~agvLVt~Vi~vk~~~~-~~~~~~~-~~~~~lvdg-------~~-~  450 (712)
                      |||++|+.+++++|+++++|+|+|++|+||+|+|||+|||++|+++.+... ..+...+ ....-+++.       ++ .
T Consensus       330 eYA~dVV~~l~d~C~~~~~p~P~IisESGRaitAHhaVLI~~Vi~v~~~~~~~~p~~~~~~~~~~l~~~~~e~~~~i~~r  409 (652)
T COG1166         330 EYANDVVWALKDACEEKGLPHPTIISESGRAITAHHAVLIANVIGVERHEYNDAPLPDAPRNLPPLWRTLQELYESITAR  409 (652)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCeEEeecchhhhhcceEEEeeecccccCCCCCCCCCCCcccchHHHHHHHHHhcccCHH
Confidence            999999999999999999999999999999999999999999999987653 1222211 111123321       22 1


Q ss_pred             hHHHHH-------HHHHHHHHhh------------------hhc--------cCC---------CCcccccccccccccc
Q 005135          451 DARSDY-------TKMTTAALRA------------------MEI--------GAS---------DPVRTYHVNLSIFTSI  488 (712)
Q Consensus       451 ~~~~~y-------~~~~~~~~~g------------------~~~--------~~~---------~~~~~Y~~N~Svf~Sl  488 (712)
                      +++|.|       ++++..|..|                  +++        ..+         .++++||+|||+|||+
T Consensus       410 ~~~E~~hds~~~~~~~~~~f~~G~l~L~~Ra~aEqL~~aic~ki~~~~~~~~~~~r~~ldeLqe~ladky~vNfSlFQSl  489 (652)
T COG1166         410 NLREWYHDSQDDLEDAHSLFNLGYLSLQERAWAEQLYLAICHKVQQLLRQKNRSHRPILDELQERLADKYYVNFSLFQSL  489 (652)
T ss_pred             HHHHHHHHhHhHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHhhhhccCChHHHHHHHHHHhhhhEEeehhhccC
Confidence            445666       3345555555                  111        112         1578899999999999


Q ss_pred             chhhhcCCcceeeecCCCCCCCCeeeEeecccccCCCccccccCCC---cccCCccccCCCCCCCcccEEEeecccchhc
Q 005135          489 PDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGG---TSLPLHEMVGGGCGERGPYYLGMFLGGAYEE  565 (712)
Q Consensus       489 pD~w~i~q~fPI~pl~rl~e~p~~~~~l~G~TCdS~D~I~~fi~~~---~~LPl~~l~~G~~~~~~~d~L~~~~~GAYq~  565 (712)
                      ||.|+|+|+|||+||+|++|+|+++++|+|+||||||+|++|++..   .+||+|+.++     +++|+||||++||||+
T Consensus       490 PD~W~IdQlFPI~Pl~rLdE~PtRravL~DiTCDSDG~Id~yid~~~i~s~Lplh~~~~-----~epy~lGfFLVGAYQE  564 (652)
T COG1166         490 PDAWGIDQLFPILPLHRLDEEPTRRAVLLDITCDSDGKIDHYIDGDGIKSTLPLHEYDP-----GEPYLLGFFLVGAYQE  564 (652)
T ss_pred             cchhccccccccccccccCCCccceeEEEeeeeCCCCcceeeecCccccccccCCCCCC-----CCCceeeeehHhHHHH
Confidence            9999999999999999999999999999999999999999999864   7999999999     5999999999999999


Q ss_pred             cccCCCCCCCCCcEEEEEecCCCCeEEEEEcCCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHhccCCCCCCCCCCCCccc
Q 005135          566 ALGGVHNLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAEEYCGQEHGSNGGDGDTDDYD  645 (712)
Q Consensus       566 ~m~s~fNlf~~p~~V~V~~~d~~g~~~i~r~~~g~t~~dvl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  645 (712)
                      +||++||||++|++|+|. .+.+|+|+|...++|+|++|||+||+|+|++|++.||++++++...            .+ 
T Consensus       565 ILG~~HNLFGdt~~v~V~-v~~~G~y~ie~~~egdTi~dmL~yv~yd~~~l~~~~r~~i~~a~l~------------~e-  630 (652)
T COG1166         565 ILGNMHNLFGDTTAVHVV-VDPKGSYEIEDIVEGDTVADMLEYVQYDPKELLTLYRQQIEAADLT------------AE-  630 (652)
T ss_pred             HHhhhhhccCCCceEEEE-ECCCCcEEEEeeeccccHHHHHHHhccCHHHHHHHHHHHHHhcCCC------------HH-
Confidence            999999999999999998 4667889999999999999999999999999999999999998322            12 


Q ss_pred             cccccHHHHHHHHHHhccCCCcccC
Q 005135          646 HGMANNSALASSLAQYFHSMPYLVV  670 (712)
Q Consensus       646 ~~~~~~~~~~~~~~~~l~~~tyl~~  670 (712)
                         |+ ++++++|+.+|.+||||++
T Consensus       631 ---e~-~~~L~~le~~L~~ytYL~~  651 (652)
T COG1166         631 ---EQ-KQLLEELEAGLNGYTYLED  651 (652)
T ss_pred             ---HH-HHHHHHHHHhhccCccccC
Confidence               34 8999999999999999986

>PRK05354 arginine decarboxylase; Provisional Back     alignment and domain information
>TIGR01273 speA arginine decarboxylase, biosynthetic Back     alignment and domain information
>PLN02439 arginine decarboxylase Back     alignment and domain information
>cd06830 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase Back     alignment and domain information
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR01048 lysA diaminopimelate decarboxylase Back     alignment and domain information
>PLN02537 diaminopimelate decarboxylase Back     alignment and domain information
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor Back     alignment and domain information
>PRK11165 diaminopimelate decarboxylase; Provisional Back     alignment and domain information
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases Back     alignment and domain information
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes Back     alignment and domain information
>cd06840 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bifunctional Aspartate Kinase/Diaminopimelate Decarboxylase Back     alignment and domain information
>TIGR01047 nspC carboxynorspermidine decarboxylase Back     alignment and domain information
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism] Back     alignment and domain information
>cd06839 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase Back     alignment and domain information
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase Back     alignment and domain information
>TIGR03099 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, exosortase system type 1 associated Back     alignment and domain information
>cd06841 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme MccE Back     alignment and domain information
>cd06843 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme PvsE Back     alignment and domain information
>cd06829 PLPDE_III_CANSDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Carboxynorspermidine Decarboxylase Back     alignment and domain information
>cd00622 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase Back     alignment and domain information
>cd06842 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA Back     alignment and domain information
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional Back     alignment and domain information
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases [] Back     alignment and domain information
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Back     alignment and domain information
>cd06819 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase Back     alignment and domain information
>cd06812 PLPDE_III_DSD_D-TA_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 1 Back     alignment and domain information
>cd00430 PLPDE_III_AR Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase Back     alignment and domain information
>cd06818 PLPDE_III_cryptic_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase Back     alignment and domain information
>cd06820 PLPDE_III_LS_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Low Specificity D-Threonine Aldolase-like Back     alignment and domain information
>cd06813 PLPDE_III_DSD_D-TA_like_2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 2 Back     alignment and domain information
>cd06821 PLPDE_III_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme D-Threonine Aldolase Back     alignment and domain information
>PF00278 Orn_DAP_Arg_deC: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; InterPro: IPR022643 These enzymes are collectively known as group IV decarboxylases [] Back     alignment and domain information
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX Back     alignment and domain information
>TIGR00492 alr alanine racemase Back     alignment and domain information
>PRK00053 alr alanine racemase; Reviewed Back     alignment and domain information
>PRK13340 alanine racemase; Reviewed Back     alignment and domain information
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins Back     alignment and domain information
>cd07376 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase Back     alignment and domain information
>cd06826 PLPDE_III_AR2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme, Alanine Racemase 2 Back     alignment and domain information
>cd06817 PLPDE_III_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Eukaryotic D-Serine Dehydratase Back     alignment and domain information
>cd06827 PLPDE_III_AR_proteobact Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases Back     alignment and domain information
>cd06814 PLPDE_III_DSD_D-TA_like_3 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 3 Back     alignment and domain information
>cd06815 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1 Back     alignment and domain information
>cd06824 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins Back     alignment and domain information
>PF01168 Ala_racemase_N: Alanine racemase, N-terminal domain; InterPro: IPR001608 Alanine racemase plays a role in providing the D-alanine required for cell wall biosynthesis by isomerising L-alanine to D-alanine Back     alignment and domain information
>TIGR00044 pyridoxal phosphate enzyme, YggS family Back     alignment and domain information
>COG3616 Predicted amino acid aldolase or racemase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional Back     alignment and domain information
>cd06825 PLPDE_III_VanT Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, VanT and similar proteins Back     alignment and domain information
>PRK03646 dadX alanine racemase; Reviewed Back     alignment and domain information
>COG0787 Alr Alanine racemase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>COG3457 Predicted amino acid racemase [Amino acid transport and metabolism] Back     alignment and domain information
>cd06822 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins Back     alignment and domain information
>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only] Back     alignment and domain information
>KOG3157 consensus Proline synthetase co-transcribed protein [General function prediction only] Back     alignment and domain information
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily Back     alignment and domain information
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated Back     alignment and domain information
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain Back     alignment and domain information
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain Back     alignment and domain information
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain Back     alignment and domain information
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain Back     alignment and domain information
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase Back     alignment and domain information
>PRK11858 aksA trans-homoaconitate synthase; Reviewed Back     alignment and domain information
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain Back     alignment and domain information
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query712
3nzq_A666 Crystal Structure Of Biosynthetic Arginine Decarbox 7e-64
3nzq_A666 Crystal Structure Of Biosynthetic Arginine Decarbox 1e-23
3n2o_A648 X-Ray Crystal Structure Of Arginine Decarboxylase C 8e-63
3n2o_A648 X-Ray Crystal Structure Of Arginine Decarboxylase C 7e-20
3nzp_A619 Crystal Structure Of The Biosynthetic Arginine Deca 2e-45
3nzp_A619 Crystal Structure Of The Biosynthetic Arginine Deca 1e-18
2p3e_A420 Crystal Structure Of Aq1208 From Aquifex Aeolicus L 2e-05
>pdb|3NZQ|A Chain A, Crystal Structure Of Biosynthetic Arginine Decarboxylase Adc (Spea) From Escherichia Coli, Northeast Structural Genomics Consortium Target Er600 Length = 666 Back     alignment and structure 
Iteration: 1

 Score =  241 bits (616), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 134/348 (38%), Positives = 208/348 (59%), Gaps = 13/348 (3%)
Query: 73  YKIDSWGAPYFAVNPSGNVSVRPYGHATLAHQEIDLLKIVKKVSDPKSVGGLGLQLPLIV 132
           Y I  WG  Y+ VN  G++SV P     +    +DL ++VK      +    G +LP + 
Sbjct: 39  YNIAWWGNNYYDVNELGHISVCP--DPDVPEARVDLAQLVK------TREAQGQRLPALF 90
Query: 133 RLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLE 192
             P +L+ RL S+++AF+ A ++ GY   Y  V+P+K NQ R V+E ++  G     GLE
Sbjct: 91  CFPQILQHRLRSINAAFKRARESYGYNGDYFLVYPIKVNQHRRVIESLIHSGEPL--GLE 148
Query: 193 AGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLV 252
           AGSK EL+  ++    G   +++VCNG+KD  YI LAL+  K+   V +V+E+  E+ +V
Sbjct: 149 AGSKAELMAVLAH--AGMTRSVIVCNGYKDREYIRLALIGEKMGHKVYLVIEKMSEIAIV 206
Query: 253 IEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDCF 312
           ++ +++LNV P +G RA+L ++ SG + S+ GEK KFGL  TQ+L++V+ L  A  LD  
Sbjct: 207 LDEAERLNVVPRLGVRARLASQGSGKWQSSGGEKSKFGLAATQVLQLVETLREAGRLDSL 266
Query: 313 QLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVXXXXXXXXXXXXXSKSADSD 372
           QLLHFH+GSQ+ +   +  GV E+A+ Y EL +LG N+Q              ++S  SD
Sbjct: 267 QLLHFHLGSQMANIRDIATGVRESARFYVELHKLGVNIQCFDVGGGLGVDYEGTRS-QSD 325
Query: 373 LSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILI 420
            SV Y L EYA+ ++ AI   C+   + HP + +ESGRA+ +HH++L+
Sbjct: 326 CSVNYGLNEYANNIIWAIGDACEENGLPHPTVITESGRAVTAHHTVLV 373
>pdb|3NZQ|A Chain A, Crystal Structure Of Biosynthetic Arginine Decarboxylase Adc (Spea) From Escherichia Coli, Northeast Structural Genomics Consortium Target Er600 Length = 666 Back     alignment and structure
>pdb|3N2O|A Chain A, X-Ray Crystal Structure Of Arginine Decarboxylase Complexed With Arginine From Vibrio Vulnificus Length = 648 Back     alignment and structure
>pdb|3N2O|A Chain A, X-Ray Crystal Structure Of Arginine Decarboxylase Complexed With Arginine From Vibrio Vulnificus Length = 648 Back     alignment and structure
>pdb|3NZP|A Chain A, Crystal Structure Of The Biosynthetic Arginine Decarboxylase Spea From Campylobacter Jejuni, Northeast Structural Genomics Consortium Target Br53 Length = 619 Back     alignment and structure
>pdb|3NZP|A Chain A, Crystal Structure Of The Biosynthetic Arginine Decarboxylase Spea From Campylobacter Jejuni, Northeast Structural Genomics Consortium Target Br53 Length = 619 Back     alignment and structure
>pdb|2P3E|A Chain A, Crystal Structure Of Aq1208 From Aquifex Aeolicus Length = 420 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query712
3nzq_A666 ADC, biosynthetic arginine decarboxylase; alpha-be 0.0
3n2o_A648 ADC, biosynthetic arginine decarboxylase; lyase; H 0.0
3nzp_A619 Arginine decarboxylase; alpha-beta protein, struct 0.0
2j66_A428 BTRK, decarboxylase; butirosin, AHBA biosynthesis, 2e-20
2o0t_A467 Diaminopimelate decarboxylase; PLP binding enzyme, 3e-19
1twi_A434 Diaminopimelate decarboxylase; antibiotic resistan 1e-18
3btn_A448 Antizyme inhibitor 1; TIM-like A/B barrel domain a 2e-18
3n2b_A441 Diaminopimelate decarboxylase; LYSA, lyase, struct 2e-18
2qgh_A425 Diaminopimelate decarboxylase; lyase; HET: PLP LYS 4e-18
2oo0_A471 ODC, ornithine decarboxylase; beta-alpha barrel, s 1e-17
2p3e_A420 Diaminopimelate decarboxylase; southeast collabora 2e-17
7odc_A424 Protein (ornithine decarboxylase); pyridoxal-5'-ph 3e-17
1knw_A425 Diaminopimelate decarboxylase; pyridoxal-phosphate 3e-17
1f3t_A425 ODC, ornithine decarboxylase; beta-alpha-barrel, m 6e-17
3vab_A443 Diaminopimelate decarboxylase 1; structural genomi 7e-17
3mt1_A365 Putative carboxynorspermidine decarboxylase prote; 1e-16
2plj_A419 Lysine/ornithine decarboxylase; type IV decarboxyl 2e-16
2nva_A372 Arginine decarboxylase, A207R protein; PLP, TIM ba 4e-16
2yxx_A386 Diaminopimelate decarboxylase; TM1517, TIM beta/al 7e-16
3n29_A418 Carboxynorspermidine decarboxylase; lyase; HET: PL 3e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-12
>3nzq_A ADC, biosynthetic arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; 3.10A {Escherichia coli} Length = 666 Back     alignment and structure
 Score =  615 bits (1587), Expect = 0.0
 Identities = 216/644 (33%), Positives = 328/644 (50%), Gaps = 76/644 (11%)

Query: 40  PPPTPMSPTSASAGSVAADVDSSHWSPSHSASLYKIDSWGAPYFAVNPSGNVSVRPYGHA 99
               P S           +V  S    S     Y I  WG  Y+ VN  G++SV P    
Sbjct: 6   SMGLPSSAGEHGVLRSMQEVAMSSQEASKMLRTYNIAWWGNNYYDVNELGHISVCPDP-- 63

Query: 100 TLAHQEIDLLKIVKKVSDPKSVGGLGLQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYE 159
            +    +DL ++VK           G +LP +   P +L+ RL S+++AF+ A ++ GY 
Sbjct: 64  DVPEARVDLAQLVKTREAQ------GQRLPALFCFPQILQHRLRSINAAFKRARESYGYN 117

Query: 160 ARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSCLCKGSPEALLVCNG 219
             Y  V+P+K NQ R V+E ++  G     GLEAGSK EL+  ++    G   +++VCNG
Sbjct: 118 GDYFLVYPIKVNQHRRVIESLIHSGE--PLGLEAGSKAELMAVLAH--AGMTRSVIVCNG 173

Query: 220 FKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHF 279
           +KD  YI LAL+  K+   V +V+E+  E+ +V++ +++LNV P +G RA+L ++ SG +
Sbjct: 174 YKDREYIRLALIGEKMGHKVYLVIEKMSEIAIVLDEAERLNVVPRLGVRARLASQGSGKW 233

Query: 280 GSTSGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQI 339
            S+ GEK KFGL  TQ+L++V+ L  A  LD  QLLHFH+GSQ+ +   +  GV E+A+ 
Sbjct: 234 QSSGGEKSKFGLAATQVLQLVETLREAGRLDSLQLLHFHLGSQMANIRDIATGVRESARF 293

Query: 340 YCELVRLGANMQVIDIGGGLGIDYDGSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNV 399
           Y EL +LG N+Q  D+GGGLG+DY+G++S  SD SV Y L EYA+ ++ AI   C+   +
Sbjct: 294 YVELHKLGVNIQCFDVGGGLGVDYEGTRSQ-SDCSVNYGLNEYANNIIWAIGDACEENGL 352

Query: 400 KHPVLCSESGRAIVSHHSILIFEAVSAS----VSRAAPVAMSPLGLQYL----------- 444
            HP + +ESGRA+ +HH++L+   +           AP   +P  LQ +           
Sbjct: 353 PHPTVITESGRAVTAHHTVLVSNIIGVERNEYTVPTAPAEDAPRALQSMWETWQEMHEPG 412

Query: 445 -----------VEGLTEDARSDY-TKMTTAALRA----------MEIGA----------- 471
                       +    D    Y + + +   RA           E+             
Sbjct: 413 TRRSLREWLHDSQMDLHDIHIGYSSGIFSLQERAWAEQLYLSMCHEVQKQLDPQNRAHRP 472

Query: 472 ------SDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDG 525
                        +VN S+F S+PD W I QLFP++P+  LD+ P  R VL D+TCDSDG
Sbjct: 473 IIDELQERMADKMYVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDG 532

Query: 526 KIDKFIGGG---TSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRV 582
            ID +I G    T++P+ E          P  LG F+ GAY+E LG +HNLFG    V V
Sbjct: 533 AIDHYIDGDGIATTMPMPEYDPE-----NPPMLGFFMVGAYQEILGNMHNLFGDTEAVDV 587

Query: 583 LQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAEE 626
                  S  V  +  G +  D+L+ +Q +P+ +    + + ++
Sbjct: 588 FV-FPDGSVEVELSDEGDTVADMLQYVQLDPKTLLTQFRDQVKK 630
>3n2o_A ADC, biosynthetic arginine decarboxylase; lyase; HET: PLP; 2.30A {Vibrio vulnificus} Length = 648 Back     alignment and structure
>3nzp_A Arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; HET: PLP; 3.00A {Campylobacter jejuni subsp} Length = 619 Back     alignment and structure
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP; 1.65A {Bacillus circulans} Length = 428 Back     alignment and structure
>2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine biosynthesis, STRU genomics, TB structural genomics consortium, TBSGC; HET: LLP; 2.33A {Mycobacterium tuberculosis} PDB: 1hkv_A* 1hkw_A Length = 467 Back     alignment and structure
>1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine biosynthesis, structural genomics, NYSGXRC, PSI; HET: LYS PLP; 2.00A {Methanocaldococcus jannaschii} SCOP: b.49.2.3 c.1.6.1 PDB: 1tuf_A* Length = 434 Back     alignment and structure
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus} Length = 448 Back     alignment and structure
>3n2b_A Diaminopimelate decarboxylase; LYSA, lyase, structural genom center for structural genomics of infectious diseases, CSGI; 1.80A {Vibrio cholerae} Length = 441 Back     alignment and structure
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A* Length = 425 Back     alignment and structure
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET: PLP; 1.90A {Homo sapiens} Length = 471 Back     alignment and structure
>2p3e_A Diaminopimelate decarboxylase; southeast collaboratory for struct genomics, riken spring-8 center; 1.99A {Aquifex aeolicus} Length = 420 Back     alignment and structure
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyami parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A* Length = 424 Back     alignment and structure
>1knw_A Diaminopimelate decarboxylase; pyridoxal-phosphate, decarboxylation, lysin barrel, lyase; HET: PLP MES; 2.10A {Escherichia coli} SCOP: b.49.2.3 c.1.6.1 PDB: 1ko0_A* Length = 425 Back     alignment and structure
>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei} SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A* 1njj_A* Length = 425 Back     alignment and structure
>3vab_A Diaminopimelate decarboxylase 1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: LLP; 2.10A {Brucella melitensis BV} Length = 443 Back     alignment and structure
>3mt1_A Putative carboxynorspermidine decarboxylase prote; PSI2, MCSG, structural genomics; 2.50A {Sinorhizobium meliloti} Length = 365 Back     alignment and structure
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus} PDB: 2plk_A* Length = 419 Back     alignment and structure
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria chlorella virus 1} PDB: 2nv9_A* Length = 372 Back     alignment and structure
>2yxx_A Diaminopimelate decarboxylase; TM1517, TIM beta/alpha barrel fold, lyase, structural genomi NPPSFA; HET: PLP; 1.70A {Thermotoga maritima} Length = 386 Back     alignment and structure
>3n29_A Carboxynorspermidine decarboxylase; lyase; HET: PLP; 1.90A {Campylobacter jejuni subsp} Length = 418 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query712
3n2o_A648 ADC, biosynthetic arginine decarboxylase; lyase; H 100.0
3nzq_A666 ADC, biosynthetic arginine decarboxylase; alpha-be 100.0
3nzp_A619 Arginine decarboxylase; alpha-beta protein, struct 100.0
3vab_A443 Diaminopimelate decarboxylase 1; structural genomi 100.0
3n2b_A441 Diaminopimelate decarboxylase; LYSA, lyase, struct 100.0
2o0t_A467 Diaminopimelate decarboxylase; PLP binding enzyme, 100.0
7odc_A424 Protein (ornithine decarboxylase); pyridoxal-5'-ph 100.0
2j66_A428 BTRK, decarboxylase; butirosin, AHBA biosynthesis, 100.0
3mt1_A365 Putative carboxynorspermidine decarboxylase prote; 100.0
1twi_A434 Diaminopimelate decarboxylase; antibiotic resistan 100.0
3n29_A418 Carboxynorspermidine decarboxylase; lyase; HET: PL 100.0
1knw_A425 Diaminopimelate decarboxylase; pyridoxal-phosphate 100.0
2qgh_A425 Diaminopimelate decarboxylase; lyase; HET: PLP LYS 100.0
2oo0_A471 ODC, ornithine decarboxylase; beta-alpha barrel, s 100.0
3btn_A448 Antizyme inhibitor 1; TIM-like A/B barrel domain a 100.0
1f3t_A425 ODC, ornithine decarboxylase; beta-alpha-barrel, m 100.0
2yxx_A386 Diaminopimelate decarboxylase; TM1517, TIM beta/al 100.0
2p3e_A420 Diaminopimelate decarboxylase; southeast collabora 100.0
2nva_A372 Arginine decarboxylase, A207R protein; PLP, TIM ba 100.0
2plj_A419 Lysine/ornithine decarboxylase; type IV decarboxyl 100.0
1xfc_A384 Alanine racemase; alpha-beta barrel, beta-structur 99.94
2dy3_A361 Alanine racemase; alpha/beta barrel, isomerase; HE 99.93
1vfs_A386 Alanine racemase; TIM-barrel, greek-KEY motief, is 99.92
2vd8_A391 Alanine racemase; pyridoxal 5'-phosphate, peptidog 99.92
1bd0_A388 Alanine racemase; isomerase, pyridoxal phosphate, 99.91
3anu_A376 D-serine dehydratase; PLP-dependent fold-type III 99.89
3co8_A380 Alanine racemase; protein structure initiative II, 99.86
3gwq_A426 D-serine deaminase; structural genomics, joint cen 99.85
1rcq_A357 Catabolic alanine racemase DADX; alpha-beta barrel 99.81
2rjg_A379 Alanine racemase; alpha/beta barrel, cell shape, c 99.78
3llx_A376 Predicted amino acid aldolase or racemase; structu 99.75
3cpg_A282 Uncharacterized protein; unknown protein, TIM barr 99.64
4ecl_A374 Serine racemase, vantg; antibiotic resistance, van 99.6
3e5p_A371 Alanine racemase; ALR, PLP, SCP, isomerase, pyrido 99.48
3kw3_A376 Alanine racemase; niaid, ssgcid, seattle structura 99.45
3sy1_A245 UPF0001 protein YGGS; engineered protein, structur 99.4
4a3q_A382 Alanine racemase 1; isomerase, PLP-dependent enzym 99.39
3mub_A367 Alanine racemase; alpha/beta barrel, extended beta 99.37
3hur_A395 Alanine racemase; structural genomics, isomerase, 99.08
3r79_A244 Uncharacterized protein; PSI-biology, structural g 98.96
1ct5_A256 Protein (yeast hypothetical protein, selenoMet); T 98.91
1ydn_A295 Hydroxymethylglutaryl-COA lyase; TIM-barrel protei 89.68
2ftp_A302 Hydroxymethylglutaryl-COA lyase; structural genomi 83.47
3ble_A337 Citramalate synthase from leptospira interrogans; 80.12
>3n2o_A ADC, biosynthetic arginine decarboxylase; lyase; HET: PLP; 2.30A {Vibrio vulnificus} Back     alignment and structure
Probab=100.00  E-value=8.3e-121  Score=1050.31  Aligned_cols=573  Identities=35%  Similarity=0.637  Sum_probs=508.1

Q ss_pred             CCCCHHhhhhhhcCCCCCCCCceeCCCccEEEecCCCCcCCcCCcCHHHHHHHhCCCCCCCCCCCCCcEEEEcHHHHHHH
Q 005135           62 SHWSPSHSASLYKIDSWGAPYFAVNPSGNVSVRPYGHATLAHQEIDLLKIVKKVSDPKSVGGLGLQLPLIVRLPDVLRDR  141 (712)
Q Consensus        62 ~~w~~~~~~~ly~i~~wg~~yf~i~~~G~l~v~p~~~~~l~~~~i~l~el~~~~~~~~~~~~~g~~tPl~V~d~d~L~~n  141 (712)
                      ++||+++|++||+|++||+|||+||++|||+|.|.+.   +..+|+|.+|+++++++      +++||+||+|++.|++|
T Consensus         7 ~~w~~~~~~~~y~i~~Wg~~yf~in~~G~l~v~~~~~---~~~~v~l~eLa~~l~~~------~~gTPlyV~D~d~L~~n   77 (648)
T 3n2o_A            7 QTSKLDRVRADYNVHYWSQGFYGIDDQGEMYVSPRSD---NAHQIQLSKIVKQLEER------QLNVPVLVRFPQILHQR   77 (648)
T ss_dssp             ---CHHHHHHHHCTHHHHTTSEEECTTSCEEECCSTT---CCCCEEHHHHHHHHHHT------TCCSSEEEECHHHHHHH
T ss_pred             CCCCHHHHHHHcCCCCCCcccccCCCCCcEEEeCCCC---CCCccCHHHHHHHHhhc------CCCCCEEEEeHHHHHHH
Confidence            4699999999999999999999999999999998542   46789999999877766      69999999999999999


Q ss_pred             HHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHcCCCC---ccceEecCHHHHHHHHHhcCCCCCCcEEEeC
Q 005135          142 LESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQF---RFGLEAGSKPELLLAMSCLCKGSPEALLVCN  218 (712)
Q Consensus       142 i~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~---~~GlEvaS~~EL~~Al~~G~~~~p~~II~~n  218 (712)
                      +++|+++|++++.+++|.++++++||+|||+++.|++.+.+.|+.|   ++|+||+|++|+++|+++|+  +|+++|++|
T Consensus        78 i~~l~~af~~a~~~~~y~~~~~i~YAvKAN~~~~Vl~~l~~~G~~~~~~g~GlDvaS~gEL~~al~aG~--~~e~iIv~n  155 (648)
T 3n2o_A           78 VHSICDAFNQAIEEYQYPNKYLLVYPIKVNQQREVVDEILASQAQLETKQLGLEAGSKPELLAVLAMAQ--HASSVIVCN  155 (648)
T ss_dssp             HHHHHHHHHHHHHHHTCSSCEEECEEGGGCCCHHHHHHHHHHHHHSTTCCCEEEECSHHHHHHHHHHTS--SSCCEEEEC
T ss_pred             HHHHHHHHHHHHHhhcccCCeEEEEEEeecCcHHHHHHHHHhCCccccCCceEEecCHHHHHHHHHcCC--CCCcEEEec
Confidence            9999999999988999999999999999999999999999997544   47999999999999999995  777888899


Q ss_pred             CCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHH
Q 005135          219 GFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILR  298 (712)
Q Consensus       219 g~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~  298 (712)
                      |+|++++|++|+.+.+.|++++|+|||++||++|.+++++.+++++|+|||||+..++++|+.||+..||||++++++.+
T Consensus       156 G~K~~eeI~~Al~~~~~G~~v~IvVDS~~EL~~I~~~A~~~g~~~~V~LRInp~~~~~~~~i~TGg~~SKFGi~~~e~~~  235 (648)
T 3n2o_A          156 GYKDREYIRLALIGEKLGHKVFIVLEKMSELDLVLREAKSLGVTPRLGIRIRLASQGAGKWQASGGEKSKFGLSASQVLN  235 (648)
T ss_dssp             SCCCHHHHHHHHHHHHTTCEEEEEECSTHHHHHHHHHHHHHTCCCEEEEEBCCSTTSTTTTCSSSSCCCCCCBCHHHHHH
T ss_pred             CCCCHHHHHHHHHhhcCCCCEEEEECCHHHHHHHHHHHHhcCCCcEEEEEEECCCCCCCCccccCCCCCcCcCCHHHHHH
Confidence            99999999999986668888889999999999999999999999999999999988788999999999999999999999


Q ss_pred             HHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcCCCCCCCCCCCcCCC
Q 005135          299 VVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGSKSADSDLSVAYT  378 (712)
Q Consensus       299 ~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~~s~~~~~~~s~~ys  378 (712)
                      +++++++.+++++++|||||+|||+.+++.++++++++.+++.++++.|+++++|||||||||+|.++++. ++.|++|+
T Consensus       236 ll~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~al~~~~~l~~~L~~~G~~l~~LDiGGGfgI~Y~~~~~~-~~~s~~~~  314 (648)
T 3n2o_A          236 VISRLKKENQLDTLQLVHFHLGSQMANIRDVRNGVNESARFYCELRTLGANITYFDVGGGLAIDYDGTRSQ-SSNSMNYG  314 (648)
T ss_dssp             HHHHHHHTTCGGGEEEEECCCCSSBCCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCSCBCCCTTSCCCS-STTSCSCC
T ss_pred             HHHHHHhCCCCCceEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEeCCCcCCCcCCcccc-ccccCCCC
Confidence            99999999998669999999999999999999999999999999999999999999999999999877653 36778899


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCeEEecCcchhccccceEEEEEEEEEecCCCCCCC----CcchhhHhh---hch---
Q 005135          379 LEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILIFEAVSASVSRAAPVAM----SPLGLQYLV---EGL---  448 (712)
Q Consensus       379 leeya~~Iv~~l~~~~~~~gv~~p~Li~EPGRalvA~agvLVt~Vi~vk~~~~~~~~~----~~~~~~~lv---dg~---  448 (712)
                      +++|++.|+.+++++|++.++++|+|++||||||||+||+||++|+++|......+..    .+...+.++   +.+   
T Consensus       315 leeya~~I~~~l~~~~~~~~~~~p~Ii~EPGR~iVa~aGvLvt~Vi~vK~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  394 (648)
T 3n2o_A          315 LVEYARNIVNTVGDVCKDYKQPMPVIISESGRSLTAHHAVLISNVIGTETYKPETVTEPEEDFPLLLNNMWRSWLNLHNG  394 (648)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCCCEEEECCHHHHHGGGEEEEEEEEEEECCCCCCCCCCCTTCCHHHHHHHHHHHTCSTT
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcEEEEecCHHHHHhhheEEEEEEEEEecCCCCCCCCcccccHHHHHHHHHHHHhhhc
Confidence            9999999999999999999999999999999999999999999999999865422211    111122222   222   


Q ss_pred             -h-hhHHHHH-------HHHHHHHHhh------------------hhc----cC-C------------CCcccccccccc
Q 005135          449 -T-EDARSDY-------TKMTTAALRA------------------MEI----GA-S------------DPVRTYHVNLSI  484 (712)
Q Consensus       449 -~-~~~~~~y-------~~~~~~~~~g------------------~~~----~~-~------------~~~~~Y~~N~Sv  484 (712)
                       + .+++|+|       +++...|.+|                  +++    .- .            .++++||||||+
T Consensus       395 ~~~~~~~e~~~da~~~~~~~~~~f~~g~~~l~~ra~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~y~~n~S~  474 (648)
T 3n2o_A          395 TDARALIEIYNDTQSDLAEVHSQFATGVLTLEHRAWAEQTSLRIYYELNRLMSTKNRFHRPILDELSERLADKFFVNFSL  474 (648)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHSCTTSTTHHHHHHHHHHHTCEEEEESSCH
T ss_pred             cCcccHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhccccCcHHHHHHHHHHhHHheeehhh
Confidence             2 3556777       4455566666                  111    10 1            156889999999


Q ss_pred             ccccchhhhcCCcceeeecCCCCCCCCeeeEeecccccCCCccccccCC---CcccCCccccCCCCCCCcccEEEeeccc
Q 005135          485 FTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGG  561 (712)
Q Consensus       485 f~SlpD~w~i~q~fPI~pl~rl~e~p~~~~~l~G~TCdS~D~I~~fi~~---~~~LPl~~l~~G~~~~~~~d~L~~~~~G  561 (712)
                      ||||||+|+|+|+||||||||++|+|+++++|+|+||||||+|++|++.   ..+||||+++.     +|+||||||++|
T Consensus       475 fqslpD~W~i~q~fpi~Pi~rl~e~p~~~~~l~diTCDsdG~i~~f~~~~~~~~~l~lh~~~~-----~e~y~lg~fl~G  549 (648)
T 3n2o_A          475 FQSLPDSWGIDQVFPVLPLSGLQNAADRRAVMLDITCDSDGAIDAYVDGQGIESTLPVPAWNE-----DEPYLMGFFLVG  549 (648)
T ss_dssp             HHHCHHHHHHCCCCCEEESSCGGGTTSEEEEEEESSSCTTCBCCCEEETTEEESSEEECCCCT-----TSCCEEEEESCC
T ss_pred             hccCcchhhhcCccceeeccccCCCcceeeEEeccccCCCCchhhccCCCCCccceecCcCCC-----CCccEEEEEecc
Confidence            9999999999999999999999999999999999999999999999976   37999999987     689999999999


Q ss_pred             chhccccCCCCCCCCCcEEEEEecCCCCeEEEEEcCCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 005135          562 AYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAEEYCGQEHGSNGGDGDT  641 (712)
Q Consensus       562 AYq~~m~s~fNlf~~p~~V~V~~~d~~g~~~i~r~~~g~t~~dvl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  641 (712)
                      |||++||++|||||+|++|+|.. +++|+|.+.+.++|+|++|||++|+|+|+.|+++||+++++++..           
T Consensus       550 AYQe~lg~~HnLfg~~~~v~v~~-~~~g~~~~~~~~~g~t~~~~l~~~~y~~~~~~~~~~~~~~~~~~~-----------  617 (648)
T 3n2o_A          550 AYQEILGDMHNLFGDTHSVVVNV-GDQGEINIDFINEGDTVEDMMRYVHIDVDQIRKNYHSLVSQRVDQ-----------  617 (648)
T ss_dssp             SSHHHHCCCGGGCCCCEEEEEEE-CTTSCEEEEEEECCCBHHHHHHHTTCCHHHHHHHHHHHHHHHSCH-----------
T ss_pred             hhhHHhccccccCCCCCEEEEEE-cCCCCEEEEEeecCCCHHHHHHhcCCCHHHHHHHHHHHHHhcCCH-----------
Confidence            99999999999999999999994 666889999999999999999999999999999999999986332           


Q ss_pred             CccccccccHHHHHHHHHHhccCCCcccC
Q 005135          642 DDYDHGMANNSALASSLAQYFHSMPYLVV  670 (712)
Q Consensus       642 ~~~~~~~~~~~~~~~~~~~~l~~~tyl~~  670 (712)
                        +    |+ +++++.|+++|+|||||+.
T Consensus       618 --~----~~-~~~~~~~~~~l~~~tyl~~  639 (648)
T 3n2o_A          618 --E----EQ-QQILAELEQGLSGYTYLED  639 (648)
T ss_dssp             --H----HH-HHHHHHHHHHHHSBSSCCC
T ss_pred             --H----HH-HHHHHHHHHHccCCCChhH
Confidence              3    34 8999999999999999997
>3nzq_A ADC, biosynthetic arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; 3.10A {Escherichia coli} Back     alignment and structure
>3nzp_A Arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; HET: PLP; 3.00A {Campylobacter jejuni subsp} Back     alignment and structure
>3vab_A Diaminopimelate decarboxylase 1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: LLP; 2.10A {Brucella melitensis BV} Back     alignment and structure
>3n2b_A Diaminopimelate decarboxylase; LYSA, lyase, structural genom center for structural genomics of infectious diseases, CSGI; 1.80A {Vibrio cholerae} Back     alignment and structure
>2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine biosynthesis, STRU genomics, TB structural genomics consortium, TBSGC; HET: LLP; 2.33A {Mycobacterium tuberculosis} PDB: 1hkv_A* 1hkw_A Back     alignment and structure
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyami parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A* Back     alignment and structure
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP; 1.65A {Bacillus circulans} Back     alignment and structure
>3mt1_A Putative carboxynorspermidine decarboxylase prote; PSI2, MCSG, structural genomics; 2.50A {Sinorhizobium meliloti} Back     alignment and structure
>1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine biosynthesis, structural genomics, NYSGXRC, PSI; HET: LYS PLP; 2.00A {Methanocaldococcus jannaschii} SCOP: b.49.2.3 c.1.6.1 PDB: 1tuf_A* Back     alignment and structure
>3n29_A Carboxynorspermidine decarboxylase; lyase; HET: PLP; 1.90A {Campylobacter jejuni subsp} Back     alignment and structure
>1knw_A Diaminopimelate decarboxylase; pyridoxal-phosphate, decarboxylation, lysin barrel, lyase; HET: PLP MES; 2.10A {Escherichia coli} SCOP: b.49.2.3 c.1.6.1 PDB: 1ko0_A* Back     alignment and structure
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A* Back     alignment and structure
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET: PLP; 1.90A {Homo sapiens} Back     alignment and structure
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus} Back     alignment and structure
>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei} SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A* 1njj_A* Back     alignment and structure
>2yxx_A Diaminopimelate decarboxylase; TM1517, TIM beta/alpha barrel fold, lyase, structural genomi NPPSFA; HET: PLP; 1.70A {Thermotoga maritima} Back     alignment and structure
>2p3e_A Diaminopimelate decarboxylase; southeast collaboratory for struct genomics, riken spring-8 center; 1.99A {Aquifex aeolicus} Back     alignment and structure
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria chlorella virus 1} PDB: 2nv9_A* Back     alignment and structure
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus} PDB: 2plk_A* Back     alignment and structure
>1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal domain, INT aldimine form, isomerase; HET: PLP; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A {Corynebacterium glutamicum} Back     alignment and structure
>1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX DCS; 1.90A {Streptomyces lavendulae} SCOP: b.49.2.2 c.1.6.1 PDB: 1vfh_A* 1vft_A* Back     alignment and structure
>2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan synthesis, PLP, OPPF, L-alanine, isomerase, D- alanine, pyridoxal phosphate; HET: MLY LLP; 1.47A {Bacillus anthracis} PDB: 2vd9_A* 3ha1_A* Back     alignment and structure
>1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine phosphonate; HET: IN5; 1.60A {Geobacillus stearothermophilus} SCOP: b.49.2.2 c.1.6.1 PDB: 1sft_A* 2sfp_A* 1l6g_A* 1niu_A* 1l6f_A* 1xql_A* 1xqk_A* 1epv_A* 1ftx_A* 3uw6_A Back     alignment and structure
>3anu_A D-serine dehydratase; PLP-dependent fold-type III enzyme, PL binding, zinc binding, lyase; HET: PLP; 1.90A {Gallus gallus} PDB: 3anv_A* 3awn_A* 3awo_A* Back     alignment and structure
>3co8_A Alanine racemase; protein structure initiative II, PSI-II, PLP, TIM barrel, structural genomics, NEW YORK SGX center for structural genomics; HET: PLP; 1.70A {Oenococcus oeni} Back     alignment and structure
>3gwq_A D-serine deaminase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; HET: MSE; 2.00A {Burkholderia xenovorans LB400} Back     alignment and structure
>1rcq_A Catabolic alanine racemase DADX; alpha-beta barrel, beta-structure for C-terminal domain, internal/external aldimine forms, isomerase; HET: KCX PLP DLY; 1.45A {Pseudomonas aeruginosa} SCOP: b.49.2.2 c.1.6.1 PDB: 2odo_A* Back     alignment and structure
>2rjg_A Alanine racemase; alpha/beta barrel, cell shape, cell WALL biogenesis/degradat isomerase, peptidoglycan synthesis, pyridoxal phosphate; HET: KCX PLP; 2.40A {Escherichia coli} PDB: 2rjh_A* 3b8v_A* 3b8u_A* 3b8t_A* 3b8w_A* Back     alignment and structure
>3llx_A Predicted amino acid aldolase or racemase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: LLP TRS; 1.50A {Idiomarina loihiensis} Back     alignment and structure
>3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer, structural genomics, PSI-2, protein structure initiative; 1.71A {Bifidobacterium adolescentis ATCC15703} Back     alignment and structure
>4ecl_A Serine racemase, vantg; antibiotic resistance, vancomycin resistance, center for STR genomics of infectious diseases (csgid); HET: MSE; 2.02A {Enterococcus faecalis} Back     alignment and structure
>3e5p_A Alanine racemase; ALR, PLP, SCP, isomerase, pyridoxal phosph; HET: PLP EPE 2PE; 2.50A {Enterococcus faecalis} PDB: 3e6e_A* Back     alignment and structure
>3kw3_A Alanine racemase; niaid, ssgcid, seattle structural genomics center for infect disease, iodide SOAK, LLP, CAT-scratch DI isomerase; HET: LLP; 2.04A {Bartonella henselae} Back     alignment and structure
>3sy1_A UPF0001 protein YGGS; engineered protein, structural genomics, PSI-biology, protei structure initiative; HET: MES; 1.47A {Escherichia coli} PDB: 1w8g_A* Back     alignment and structure
>4a3q_A Alanine racemase 1; isomerase, PLP-dependent enzymes; HET: PLP; 2.15A {Staphylococcus aureus} PDB: 3oo2_A Back     alignment and structure
>3hur_A Alanine racemase; structural genomics, isomerase, pyridoxal phosphate, PSI-2, protein structure initiative; 2.50A {Oenococcus oeni psu-1} Back     alignment and structure
>3r79_A Uncharacterized protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium, TIM barrel; HET: PLP; 1.90A {Agrobacterium tumefaciens} Back     alignment and structure
>1ct5_A Protein (yeast hypothetical protein, selenoMet); TIM barrel, pyridoxal-5'-phosphate, selenomethionine, structural genomics, PSI; HET: PLP; 2.00A {Saccharomyces cerevisiae} SCOP: c.1.6.2 PDB: 1b54_A* Back     alignment and structure
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} Back     alignment and structure
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} Back     alignment and structure
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 712
d1hkva2265 c.1.6.1 (A:46-310) Diaminopimelate decarboxylase L 6e-21
d1twia2264 c.1.6.1 (A:50-313) Diaminopimelate decarboxylase L 7e-20
d7odca2240 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxyl 2e-15
d1f3ta2240 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxyl 4e-11
d1knwa2247 c.1.6.1 (A:32-278) Diaminopimelate decarboxylase L 5e-10
>d1hkva2 c.1.6.1 (A:46-310) Diaminopimelate decarboxylase LysA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 265 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: PLP-binding barrel
family: Alanine racemase-like, N-terminal domain
domain: Diaminopimelate decarboxylase LysA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 90.9 bits (224), Expect = 6e-21
 Identities = 60/284 (21%), Positives = 92/284 (32%), Gaps = 31/284 (10%)

Query: 136 DVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGS 195
           D  R R     +AF          +     +  K      V   I + G      L+  +
Sbjct: 3   DDFRSRCRETAAAFG---------SGANVHYAAKAFLCSEVARWISEEG----LCLDVCT 49

Query: 196 KPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEI 255
             EL +A+       PE + +    K    +T A+ A    + V  + E E    +  E 
Sbjct: 50  GGELAVALHASFP--PERITLHGNNKSVSELTAAVKAGVGHIVVDSMTEIERLDAIAGEA 107

Query: 256 SKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDC-FQL 314
               +V   +    +  T        T+ E  KFGL+      +     V          
Sbjct: 108 GIVQDVLVRLTVGVEAHTHEFIS---TAHEDQKFGLSVASGAAMAAVRRVFATDHLRLVG 164

Query: 315 LHFHIGSQIPSTALLTDGVGEAAQIYCELVR-----LGANMQVIDIGGGLGIDYDGSKSA 369
           LH HIGSQI               +  ++V        A +  +D+GGGLGI Y  S   
Sbjct: 165 LHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEFGPEKTAQIATVDLGGGLGISYLPSDDP 224

Query: 370 DSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIV 413
                    + E A+ +   +        +  P L  E GRAI 
Sbjct: 225 -------PPIAELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIA 261
>d1twia2 c.1.6.1 (A:50-313) Diaminopimelate decarboxylase LysA {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 264 Back     information, alignment and structure
>d7odca2 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxylase {Mouse (Mus musculus) [TaxId: 10090]} Length = 240 Back     information, alignment and structure
>d1f3ta2 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxylase {Trypanosoma brucei [TaxId: 5691]} Length = 240 Back     information, alignment and structure
>d1knwa2 c.1.6.1 (A:32-278) Diaminopimelate decarboxylase LysA {Escherichia coli [TaxId: 562]} Length = 247 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query712
d1hkva2265 Diaminopimelate decarboxylase LysA {Mycobacterium 100.0
d1twia2264 Diaminopimelate decarboxylase LysA {Archaeon Metha 100.0
d7odca2240 Eukaryotic ornithine decarboxylase {Mouse (Mus mus 100.0
d1f3ta2240 Eukaryotic ornithine decarboxylase {Trypanosoma br 100.0
d1knwa2247 Diaminopimelate decarboxylase LysA {Escherichia co 100.0
d1hkva1181 Diaminopimelate decarboxylase LysA {Mycobacterium 99.91
d1f3ta1169 Eukaryotic ornithine decarboxylase (ODC) {Trypanos 99.87
d1twia1170 Diaminopimelate decarboxylase LysA {Archaeon Metha 99.86
d1knwa1174 Diaminopimelate decarboxylase LysA {Escherichia co 99.84
d7odca1177 Eukaryotic ornithine decarboxylase (ODC) {Mouse (M 99.82
d1vfsa2237 Alanine racemase {Streptomyces lavendulae [TaxId: 99.24
d1bd0a2233 Alanine racemase {Bacillus stearothermophilus [Tax 98.66
d1rcqa2226 Alanine racemase {Pseudomonas aeruginosa [TaxId: 2 98.52
d1ct5a_244 "Hypothetical" protein ybl036c {Baker's yeast (Sac 96.85
>d1hkva2 c.1.6.1 (A:46-310) Diaminopimelate decarboxylase LysA {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: PLP-binding barrel
family: Alanine racemase-like, N-terminal domain
domain: Diaminopimelate decarboxylase LysA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.3e-49  Score=412.78  Aligned_cols=255  Identities=24%  Similarity=0.292  Sum_probs=228.9

Q ss_pred             cHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHHhcCCCCCCc
Q 005135          134 LPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSCLCKGSPEA  213 (712)
Q Consensus       134 d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~G~~~~p~~  213 (712)
                      |++.|++|+++|+++|+.         +++++||+|||+++.|++.|+++|    +|+||+|.+||++|+++|+  +|++
T Consensus         1 D~~~lr~~~~~~~~af~~---------~~~i~YA~KaN~~~~vl~~l~~~G----~g~dvaS~~El~~al~~G~--~~~~   65 (265)
T d1hkva2           1 DEDDFRSRCRETAAAFGS---------GANVHYAAKAFLCSEVARWISEEG----LCLDVCTGGELAVALHASF--PPER   65 (265)
T ss_dssp             EHHHHHHHHHHHHHHTTS---------GGGBEEEGGGSCCHHHHHHHHHHT----CEEEECSHHHHHHHHHTTC--CGGG
T ss_pred             CHHHHHHHHHHHHHhcCC---------CCeEEEEeccCCCHHHHHHHHHcC----CCeEEeChhhHHHHHHcCC--CHHH
Confidence            689999999999999963         479999999999999999999999    6999999999999999995  8999


Q ss_pred             EEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCC-CCCCccccCCCCCCCCCC
Q 005135          214 LLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTK-HSGHFGSTSGEKGKFGLT  292 (712)
Q Consensus       214 II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~-~~~~~~~tgg~~SKFGl~  292 (712)
                      |+|++++|++++|++|+.   .|+. +|+|||++||++|.+++++.++.++|++|+||+.. .++.|..+++..||||++
T Consensus        66 Ii~~gp~K~~~~l~~Al~---~gv~-~i~vDs~~El~~i~~~~~~~~~~~~v~lr~~p~~~~~~~~~~~~g~~~skFG~~  141 (265)
T d1hkva2          66 ITLHGNNKSVSELTAAVK---AGVG-HIVVDSMTEIERLDAIAGEAGIVQDVLVRLTVGVEAHTHEFISTAHEDQKFGLS  141 (265)
T ss_dssp             EEECCSSCCHHHHHHHHH---HTCC-CEEECSHHHHHHHHHHHHHHTCCEEEEEEEECSEEEEETEEEECSSCCSSSSEE
T ss_pred             heeccccchhhhHHHHHh---cCcc-cccccchHHHHHHHHHhhhccccccccccccceeccccccceeccccccccccc
Confidence            999999999999999997   3444 68999999999999999988889999999999864 445688899999999999


Q ss_pred             HHHH--HHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHH-----HcCCCCcEEEEcCCCCcCcCC
Q 005135          293 TTQI--LRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELV-----RLGANMQVIDIGGGLGIDYDG  365 (712)
Q Consensus       293 ~~e~--~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~-----~~G~~l~~IDIGGGlgv~Y~~  365 (712)
                      .+++  ...+.++...+.++ +.|||||+|||+.+++.|.++++++.+++.++.     +.|.++++||||||||++|..
T Consensus       142 ~~~~~~~~~~~~~~~~~~l~-~~GlH~HvGSq~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~l~~ldiGGG~~v~y~~  220 (265)
T d1hkva2         142 VASGAAMAAVRRVFATDHLR-LVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEFGPEKTAQIATVDLGGGLGISYLP  220 (265)
T ss_dssp             STTSHHHHHHHHHHHCSSEE-EEEEECCCEEEECCSHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCEEECCCCBCCCSST
T ss_pred             hhhhHHHHHHHHHHhhcCce-eeeeeeeecccccchHHHHHHHHHHHHHHHhHHHHHHHhcCCCcceeeecCCCCccCCC
Confidence            8764  34456666777777 899999999999999999999999999988774     468999999999999999976


Q ss_pred             CCCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEecCcchhccc
Q 005135          366 SKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSH  415 (712)
Q Consensus       366 s~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv~~p~Li~EPGRalvA~  415 (712)
                      ++.       .+++++|++.|...++++|...+.+.|+|++|||||||++
T Consensus       221 ~~~-------~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~EPGR~lvg~  263 (265)
T d1hkva2         221 SDD-------PPPIAELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGP  263 (265)
T ss_dssp             TCC-------CCCHHHHHHHHHHHHHHHHHTTTCCCCEEEBCCSHHHHST
T ss_pred             CCC-------CCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEeCchhhhcC
Confidence            543       4799999999999999999999999999999999999995
>d1twia2 c.1.6.1 (A:50-313) Diaminopimelate decarboxylase LysA {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d7odca2 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxylase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1f3ta2 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxylase {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1knwa2 c.1.6.1 (A:32-278) Diaminopimelate decarboxylase LysA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hkva1 b.49.2.3 (A:2-45,A:311-447) Diaminopimelate decarboxylase LysA {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1f3ta1 b.49.2.3 (A:14-43,A:284-422) Eukaryotic ornithine decarboxylase (ODC) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1twia1 b.49.2.3 (A:15-49,A:314-448) Diaminopimelate decarboxylase LysA {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1knwa1 b.49.2.3 (A:2-31,A:279-422) Diaminopimelate decarboxylase LysA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d7odca1 b.49.2.3 (A:2-43,A:284-418) Eukaryotic ornithine decarboxylase (ODC) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1vfsa2 c.1.6.1 (A:13-249) Alanine racemase {Streptomyces lavendulae [TaxId: 1914]} Back     information, alignment and structure
>d1bd0a2 c.1.6.1 (A:12-244) Alanine racemase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1rcqa2 c.1.6.1 (A:8-233) Alanine racemase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1ct5a_ c.1.6.2 (A:) "Hypothetical" protein ybl036c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure